Query psy10222
Match_columns 1693
No_of_seqs 818 out of 7283
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 21:00:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 2.3E-41 8E-46 433.1 44.3 440 1225-1683 5-486 (491)
2 4gc0_A D-xylose-proton symport 100.0 1.6E-34 5.5E-39 369.6 22.3 415 474-1203 8-473 (491)
3 1pw4_A Glycerol-3-phosphate tr 100.0 1.1E-29 3.8E-34 320.7 30.3 395 1227-1659 23-433 (451)
4 3o7q_A L-fucose-proton symport 100.0 1.1E-27 3.8E-32 301.2 38.7 365 1230-1654 24-427 (438)
5 4aps_A DI-OR tripeptide H+ sym 99.9 5.7E-24 1.9E-28 271.8 32.8 394 1263-1666 47-478 (491)
6 1pw4_A Glycerol-3-phosphate tr 99.9 8E-25 2.7E-29 276.2 23.7 340 297-640 39-432 (451)
7 3o7q_A L-fucose-proton symport 99.9 6.5E-24 2.2E-28 266.8 23.5 338 296-639 36-430 (438)
8 2gfp_A EMRD, multidrug resista 99.9 9.8E-25 3.3E-29 268.3 14.9 351 1235-1644 3-361 (375)
9 4aps_A DI-OR tripeptide H+ sym 99.9 7.2E-23 2.5E-27 261.5 20.9 323 318-640 48-470 (491)
10 2gfp_A EMRD, multidrug resista 99.9 6.7E-23 2.3E-27 251.9 12.9 327 294-626 8-361 (375)
11 2cfq_A Lactose permease; trans 99.9 3E-22 1E-26 249.7 14.0 370 1247-1667 22-407 (417)
12 2xut_A Proton/peptide symporte 99.9 4.5E-21 1.5E-25 247.0 23.2 400 1267-1667 51-510 (524)
13 2xut_A Proton/peptide symporte 99.8 1.3E-19 4.3E-24 233.5 17.9 298 321-618 51-464 (524)
14 2cfq_A Lactose permease; trans 99.8 5.3E-20 1.8E-24 229.4 11.1 325 319-644 38-403 (417)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=2.3e-41 Score=433.07 Aligned_cols=440 Identities=21% Similarity=0.349 Sum_probs=354.1
Q ss_pred chhhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCC-----CccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchh
Q psy10222 1225 YVRCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANS-----TIPITPEDGTWIASMASLPTFIACILGSFLMEMYGR 1299 (1693)
Q Consensus 1225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~-----~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GR 1299 (1693)
++++..+.+.++++++.++.+||.++++.++|.+++... +.+.++.+.+++.+++.+|..+|++++|+++||+||
T Consensus 5 ~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GR 84 (491)
T 4gc0_A 5 YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGR 84 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCH
T ss_pred cChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344556777778889999999999999999999875221 112334567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhh
Q psy10222 1300 RLTNLVLCIPFIMGWVIIS------------------LATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLS 1361 (1693)
Q Consensus 1300 r~~ll~~~~l~~i~~ll~~------------------~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~ 1361 (1693)
|++++++.+++.+++++++ +++|+++++++|+++|+|.|+..+.++++++|++|+++|++..
T Consensus 85 k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~ 164 (491)
T 4gc0_A 85 RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence 9999999999999999999 5889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhc------------hhHHHHHHhHHHHHHHHHHhccccCChHHHHhcCCHHHHHHHHHHHh
Q psy10222 1362 ALLCTAVAIGIFTAHLLGTFL------------HWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLR 1429 (1693)
Q Consensus 1362 ~l~~~~~~lG~~lg~~lg~~l------------~WR~~f~i~~i~~~v~lv~~~~lpEsp~~l~~~~~~~~a~~~l~~~~ 1429 (1693)
++.+.+..+|.++++.++... .||+++.+..++.++.++..+++||||||+..+++.|++++.+++.+
T Consensus 165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~ 244 (491)
T 4gc0_A 165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIM 244 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhc
Confidence 999999999999998887654 69999999999999988888899999999999999999999988765
Q ss_pred CCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcC
Q psy10222 1430 GHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEVS 1509 (1693)
Q Consensus 1430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g 1509 (1693)
+++...++.. +..... ...++...... .. .+++.........++++.+.+.+.+|.|.+.+..+
T Consensus 245 ~~~~~~~~~~-~~~~~~-----------~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (491)
T 4gc0_A 245 GNTLATQAVQ-EIKHSL-----------DHGRKTGGRLL-MF---GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLG 308 (491)
T ss_dssp HHHHHHHHHH-HHHHHH-----------HHHHHHTTHHH-HS---CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSS
T ss_pred CCchhHHHHH-HHHHHH-----------HhhhhhhhHHH-Hh---cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcC
Confidence 4322211111 100000 00111111111 11 23455666677777888889999999999999888
Q ss_pred CC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHh
Q psy10222 1510 PD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSI 1588 (1693)
Q Consensus 1510 ~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1588 (1693)
.+ .+........++..+++.++++++.||+|||+.++.+...++++++.+ +.... ...+.+......+++...+..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l-~~~~~--~~~~~~~~~~~~~~~~~~~~~ 385 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSL-GTAFY--TQAPGIVALLSMLFYVAAFAM 385 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH-HHHHH--TTCCHHHHHHHHHHHHHHHHT
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHH-HHHHh--cccchHHHHHHHHHHHHHHHh
Confidence 77 666677788889999999999999999999999999988888877766 33222 334445556666667777888
Q ss_pred hccccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCcchhHHHHHHHHHHHHHHHhhhccC
Q psy10222 1589 GLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFL------SIGTPETFGLYGCITAFGFVFLYIFLPE 1662 (1693)
Q Consensus 1589 ~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~------~~g~~~~f~i~~~~~ll~~v~~~~~~~e 1662 (1693)
+..++.+.+.+|++|++.|+++.|++++++++++++++.+.+.+.+ ..+...+|++++++++++.++.++++||
T Consensus 386 ~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 386 SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 8889999999999999999999999999999999999999887643 3466778999999999999999999999
Q ss_pred CCCCCHHHHHHHhhccCccCC
Q psy10222 1663 TKNKTLQQIEDDFKSKTMEVG 1683 (1693)
Q Consensus 1663 t~~~~~~~~~~~~~~~~~~~~ 1683 (1693)
||+|++||+++.+++++++++
T Consensus 466 Tkg~tLeei~~~f~~~~~~~~ 486 (491)
T 4gc0_A 466 TKGKTLEELEALWEPETKKTQ 486 (491)
T ss_dssp CTTCCHHHHGGGTC-------
T ss_pred CCCCCHHHHHHHhCCCCcccc
Confidence 999999999999987765443
No 2
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.6e-34 Score=369.61 Aligned_cols=415 Identities=20% Similarity=0.324 Sum_probs=319.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhcccccccC-----CC----------CcccccchhHHHHHHHHHHhhhhhchhHH
Q psy10222 474 LFQLLAAAGPIFATLGSGMTSGFSAVLLPQLESA-----NS----------TIPITPEDGSWIACVLSCILMDLYGRRFT 538 (1693)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~----------~~~~~~~~g~~iG~~~~G~lsDr~GRk~~ 538 (1693)
++.+...+.+.++.+.+|++.+..+..+|.+... +. .+......|.++|++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4455555666677777788777766665543211 00 12234456889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh------------------cchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHH
Q psy10222 539 NLILCVPFVLGWVIMSM------------------ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIV 600 (1693)
Q Consensus 539 l~~~~~~~~i~~~~~~~------------------~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~ 600 (1693)
++++.++..++++++++ ++|+++++++|++.|+|.|+..+..++|++|..|+++||...+..
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 99999999999999884 779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhh------------hhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHhCCC
Q psy10222 601 SLAISSGIFISHLLGTFL------------HWKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHS 668 (1693)
Q Consensus 601 ~~~~~lG~~~~~~~~~~~------------~wr~~~~~~~~~~~i~~~~~~~lpESp~~l~~~gr~~~a~~~l~~l~~~~ 668 (1693)
+.+..+|.++++.++... .||.++.+..+++++.++..+++|||||||..|+|.||+++.+++.++++
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 999999999988776543 59999999999999999999999999999999999999999999876532
Q ss_pred CCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhccCcccHHHHHHHHHHHHHHHhhhhhhHHhcHHHHHHhcCCCc
Q psy10222 669 AESESELKSMLNHAQKITITKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQFSGVNTVAFYSVGILKNVSPDV 748 (1693)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~G~~~~~~Y~~~i~~~~~~~~ 748 (1693)
...++ ..+..++ .++.++...+... ..+++..+.....+++|++|.+.+.+|.+.+++..+.+.
T Consensus 248 ~~~~~----~~~~~~~---------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (491)
T 4gc0_A 248 LATQA----VQEIKHS---------LDHGRKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAST 311 (491)
T ss_dssp HHHHH----HHHHHHH---------HHHHHHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCH
T ss_pred hhHHH----HHHHHHH---------HHhhhhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCc
Confidence 11111 0000000 0000111111111 224567778888889999999999999999977665432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhheeccCCCccccccchhHHHHHhhhhhhccCcccchhHHHHHhhh
Q psy10222 749 NEYVATMAIDIVRVIISHMTASALCALFPLTSIIFVYFTPESPSWLASKGYTVQAEKAFHWLRGHSDEFDNELKSILDYA 828 (1693)
Q Consensus 749 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1693)
+
T Consensus 312 ~------------------------------------------------------------------------------- 312 (491)
T 4gc0_A 312 D------------------------------------------------------------------------------- 312 (491)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred hhhHHHhhhhhccCcccchhhhhccccchhccccccccchhhHhHHHHhhcccCcCCccchhHHHHHHHHHhhccccccc
Q psy10222 829 NSAEKAFHWLRGHSDEFDNELKSIMDYAQNITITNSEDMNYKEKICEWKKNILSPEFLKPFVILLVFFFVQQFSGASTQF 908 (1693)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 908 (1693)
T Consensus 313 -------------------------------------------------------------------------------- 312 (491)
T 4gc0_A 313 -------------------------------------------------------------------------------- 312 (491)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceeeeeeehhhhccccccchhHHHHHHHHHHHHHHHHhhhHhhhccCcceeeecchhhhhhhhhhhhhccCCCccCC
Q psy10222 909 SGASTVSFYSVAILQNVSADVNEYTATMAIDILRVIMSAVTCGLLRITGRRPIAILSSLGTAFSLLGLALMLKYPQEELP 988 (1693)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 988 (1693)
+....+++.+++.+++++++++++||+|||+.++.+..+++++++.++.....
T Consensus 313 ---------------------~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~------ 365 (491)
T 4gc0_A 313 ---------------------IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT------ 365 (491)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred ---------------------chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc------
Confidence 11223455677788899999999999999999999998888888777654321
Q ss_pred cchhHHHHHHHHHHHhcCCcccccccccccceeeeccccceeeeeeeeecCccceeeccccccccccCCcchhhhhhhhh
Q psy10222 989 SFIPVILLMSYIVFVSFGLQPLPWIMAGEHTELFFLHPSVIVKIFQVKYLGPLTIMSTVTCGLLRITGRRPIAILSTLGT 1068 (1693)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1693)
T Consensus 366 -------------------------------------------------------------------------------- 365 (491)
T 4gc0_A 366 -------------------------------------------------------------------------------- 365 (491)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHhCcccccceecccccccceeheecccCCCcchhcccccchhhhhh
Q psy10222 1069 AFSLLGLALMLKYPQEELPSFIPVILLMSYIVFVSFGVQPLPWIMAGEVRYFTTYYIIHNHLFPQVTREIGSGITTCFGF 1148 (1693)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~ 1148 (1693)
+...+..+++++.+..+++.++++++|++.+| +|||++|++|+|++++++|
T Consensus 366 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E-------------~fPt~~R~~~~g~~~~~~~ 416 (491)
T 4gc0_A 366 ----------------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSE-------------IFPNAIRGKALAIAVAAQW 416 (491)
T ss_dssp ----------------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHH-------------SSCTTTHHHHHHHHHHHHH
T ss_pred ----------------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------------hCCHhHHHHHHHHHHHHHH
Confidence 11245566677778888899999999999999 9999999999999999999
Q ss_pred hhhhhhhhcccceeee------cCCCccccccccchhhhhhCCCCCCCCCccchhcccccc
Q psy10222 1149 LALFCAVKTEPLLFRS------IGTPGTFGLYGKSKTAIRQNPRWNGRDCLPEVVHSLSRN 1203 (1693)
Q Consensus 1149 ~~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~~~s~~~~~~~~~~~lpe~~~~~~~~ 1203 (1693)
+++++....+|.+.+. .+...+|++|++....+... .....||+++++.++
T Consensus 417 ~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~----~~~~~PETkg~tLee 473 (491)
T 4gc0_A 417 LANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALF----MWKFVPETKGKTLEE 473 (491)
T ss_dssp HHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HHHHCCCCTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH----HHheecCCCCCCHHH
Confidence 9999999999987653 57778899999888877766 445567776665443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=1.1e-29 Score=320.70 Aligned_cols=395 Identities=13% Similarity=0.043 Sum_probs=297.5
Q ss_pred hhhHHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHH
Q psy10222 1227 RCDKLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVL 1306 (1693)
Q Consensus 1227 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~ 1306 (1693)
+++++..+....++.+..+++.....+.+|.+.+ ++ .++.+.+++.+++.++..++++++|+++||+|||++++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 98 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE---QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS---ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence 3455667777788888999999999999999985 78 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh----hhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc
Q psy10222 1307 CIPFIMGWVIISL----ATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL 1382 (1693)
Q Consensus 1307 ~~l~~i~~ll~~~----a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l 1382 (1693)
.++..++.+++++ ++|++.++++|+++|++.|...+...+++.|++|+++|+++.++.+.+..+|.+++|.+++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ----h-hHHHHHHhHHHHHHHHHHh-ccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccch
Q psy10222 1383 ----H-WKTTSAVCALFPCASFIFA-YFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSEN 1456 (1693)
Q Consensus 1383 ----~-WR~~f~i~~i~~~v~lv~~-~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1456 (1693)
+ ||+.|++.+++.++..+.. +++||+|+....+.+.+ ...+.+++. +. ++ .
T Consensus 179 ~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~----~~--~~------~ 235 (451)
T 1pw4_A 179 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE-----------YKNDYPDDY----NE--KA------E 235 (451)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT-----------TCCC----------------------
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhh-----------hcccccccc----hh--hh------h
Confidence 7 9999999998887765544 55899886421111100 000000000 00 00 0
Q ss_pred hhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHH
Q psy10222 1457 MTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCG 1534 (1693)
Q Consensus 1457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~ 1534 (1693)
++...++...++.++++.. + ...+..+........+..+.|.++++ .|.+ .+.+.......++.+++.++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (451)
T 1pw4_A 236 QELTAKQIFMQYVLPNKLL----W-YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 310 (451)
T ss_dssp ---CCTHHHHHHTSSCHHH----H-HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHcCHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111112334443322 2 22222223333456677888888887 5888 66778888889999999999999
Q ss_pred hhhhc--CChhHHHHHHHHHH-HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHH
Q psy10222 1535 LLRIF--GRRPLALLSCLGTC-LSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGS 1611 (1693)
Q Consensus 1535 l~dr~--grr~~l~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~ 1611 (1693)
+.||+ +||+.+..+..+.. ++.+.+ ......+.+ .........+.+.....+....+..|.+|++.|+++.
T Consensus 311 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 384 (451)
T 1pw4_A 311 MSDKVFRGNRGATGVFFMTLVTIATIVY-----WMNPAGNPT-VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA 384 (451)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHHT-----TSCCTTCHH-HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHH-----HHhcccCHH-HHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHH
Confidence 99999 99998877766655 333333 111112223 3333333344444455566678899999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhh
Q psy10222 1612 GISTCFAFL-TLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIF 1659 (1693)
Q Consensus 1612 g~~~~~~~l-g~~i~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~ 1659 (1693)
|+.+...++ ++.+++.+.+.+.+..|++..+++.+++.+++.++.+..
T Consensus 385 ~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 385 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999988888877766544
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.96 E-value=1.1e-27 Score=301.23 Aligned_cols=365 Identities=13% Similarity=0.042 Sum_probs=281.4
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q psy10222 1230 KLIAAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIP 1309 (1693)
Q Consensus 1230 ~~~~~~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l 1309 (1693)
++..+..+++..+..+++....++.+|.+.+ +++.++.+.+++.+++.++..++++++|+++||+|||++++.+.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 3445555666678888898999999999986 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhch---
Q psy10222 1310 FIMGWVII---SLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFLH--- 1383 (1693)
Q Consensus 1310 ~~i~~ll~---~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l~--- 1383 (1693)
..++.+++ ++++|++.++++|+++|++.|...+...+++.|++|+++|++++++.+.+..+|.+++|++++.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999 889999999999999999999999999999999999999999999999999999999999988772
Q ss_pred ---------------------------hHHHHHHhHHHHHHHHHHhcc--ccCChHHHHhcCCHHHHHHHHHHHhCCCCc
Q psy10222 1384 ---------------------------WKTTSAVCALFPCASFIFAYF--TPESPPWLASKGFTVQAQQAFYWLRGHTAE 1434 (1693)
Q Consensus 1384 ---------------------------WR~~f~i~~i~~~v~lv~~~~--lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~ 1434 (1693)
||+.|++.+.+.++..+..++ .||+++. +. +++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~---------------~~~ 242 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NH---------------SDA 242 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CC---------------CCS
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cc---------------ccc
Confidence 999998887776665544433 5666421 00 000
Q ss_pred hHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHH-Hhhc-CCC-
Q psy10222 1435 SEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGI-SKEV-SPD- 1511 (1693)
Q Consensus 1435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~-g~s- 1511 (1693)
++.+.+..+++.++++..+...+.. +...........+.|.+ .++. |.+
T Consensus 243 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~ 294 (438)
T 3o7q_A 243 -----------------------KQGSFSASLSRLARIRHWRWAVLAQ-----FCYVGAQTACWSYLIRYAVEEIPGMTA 294 (438)
T ss_dssp -----------------------STTSHHHHHHHHTTCSHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred -----------------------cccchhhhHHHHHhChHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhccCCcch
Confidence 0011223445566655433322222 12222345566777777 7766 888
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhcc
Q psy10222 1512 VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQ 1591 (1693)
Q Consensus 1512 ~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1591 (1693)
.+.+.......++.+++.++.+++.||++||+.+..+....+++.+.+ .. .+........ ...+++.....
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~-~~~g~~~~~~~ 365 (438)
T 3o7q_A 295 GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS----AF----AGGHVGLIAL-TLCSAFMSIQY 365 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH----HH----CCHHHHHHHH-HHHHHHHTTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH----HH----cCCcHHHHHH-HHHHHHHHHHH
Confidence 777788888899999999999999999999999988887777666554 11 1122222222 33334444556
Q ss_pred ccchhhccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHH
Q psy10222 1592 QLPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIG-TPETFGLYGCITAFGFV 1654 (1693)
Q Consensus 1592 ~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~~~~~~l~~~~g-~~~~f~i~~~~~ll~~v 1654 (1693)
+..+.+..|.+|++ ++.+.++.. .+.+++.++|.+.+.+.+..| ++..+.+.+++.++..+
T Consensus 366 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 366 PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 77788888999977 888888877 678999999999999999999 88888876655554443
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.93 E-value=5.7e-24 Score=271.75 Aligned_cols=394 Identities=10% Similarity=0.045 Sum_probs=251.9
Q ss_pred CCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhh-chhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhchh
Q psy10222 1263 STIPITPEDGTWIASMASLPTFIACILGSFLMEM-YGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSS 1341 (1693)
Q Consensus 1263 ~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr-~GRr~~ll~~~~l~~i~~ll~~~a~~~~~lli~R~l~Gig~g~~~ 1341 (1693)
+|+|.++.+.+++.+++.++..++++++|+++|| +|||+++..+.++..++.+++++++|++.++++|+++|+|.|...
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 3599999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hhHhHHhhhccCCCc--chhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHHHHHHHhccc-cCCh----H
Q psy10222 1342 PVALVYIAETTEPKY--RGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIFAYFT-PESP----P 1410 (1693)
Q Consensus 1342 ~~~~~~i~e~~p~~~--Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~v~lv~~~~l-pEsp----~ 1410 (1693)
+...+++.|++|+++ |+.+.++++.+.++|..++|.+++.+ +||+.|++.++..++.++..++. |+.. +
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 999999999999998 77788889999999999999999887 89999999877766655544332 2110 0
Q ss_pred HHHhcCCHHHHHHHHHH----------------HhCC-CCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhccc
Q psy10222 1411 WLASKGFTVQAQQAFYW----------------LRGH-TAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCT 1473 (1693)
Q Consensus 1411 ~l~~~~~~~~a~~~l~~----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1473 (1693)
.-..+.+.++.++..+. ..+. +.++.............. ... .. ..++.+. ....+++
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~--~~~~~~~ 281 (491)
T 4aps_A 207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPV-FYF-AW-MISSVKV--TSTEHLR 281 (491)
T ss_dssp CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH-HHH-HH-HC--------------
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHH-HHH-HH-Hhhcccc--cHHHHHH
Confidence 00011122333332222 1111 111111110000000000 000 00 0000000 0000111
Q ss_pred CchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHH-----
Q psy10222 1474 EFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLAL----- 1546 (1693)
Q Consensus 1474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~----- 1546 (1693)
... ........ ......+.....+.|.+.++ .+.+ .+.+.......++.+++.++.+++.||++||+...
T Consensus 282 ~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~ 358 (491)
T 4aps_A 282 VVS--YIPLFIAA-VLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFA 358 (491)
T ss_dssp CTT--HHHHHHHH-HHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHH
T ss_pred HHH--HHHHHHHH-HHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHH
Confidence 111 11111111 11111223333445555554 3554 55666677778888889999999999999986544
Q ss_pred HHHHHHHHHHHHHHHHHHHhh--ccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHH
Q psy10222 1547 LSCLGTCLSLLGVASILKFMQ--GLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFV 1624 (1693)
Q Consensus 1547 ~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i 1624 (1693)
.+....+++.+.+ ....... ....+........+..+.+.....+..+.+..|.+|++.|+++.|+.+....+|+.+
T Consensus 359 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i 437 (491)
T 4aps_A 359 VGLMFAGLSFLLM-AIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL 437 (491)
T ss_dssp HHHHHHHHHHTTT-HHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444 2211110 111223333334444445555556777889999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhccCCCCC
Q psy10222 1625 VVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNK 1666 (1693)
Q Consensus 1625 ~~~~~~~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~~et~~~ 1666 (1693)
++.+.+.+.+ .++...+.+++++++++.++.++..++.+++
T Consensus 438 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 438 NAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999876654 4677888888888888888777666665543
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.92 E-value=8e-25 Score=276.17 Aligned_cols=340 Identities=14% Similarity=0.006 Sum_probs=255.1
Q ss_pred hhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHh---
Q psy10222 297 SSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISS--- 373 (1693)
Q Consensus 297 ~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~--- 373 (1693)
..+.........+|.+.++ + .+.++.+++.+.+.++..+++++.|+++||+|||++++.+.++++++++++++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~---~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~ 114 (451)
T 1pw4_A 39 AYYLVRKNFALAMPYLVEQ---G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW 114 (451)
T ss_dssp HHHHHHTSHHHHHHHTTSS---T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHH---h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444444455667777666 8 99999999999999999999999999999999999999999999999999999
Q ss_pred -cchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccC-eEEEeecC--
Q psy10222 374 -ATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHL-GLVMALVG-- 449 (1693)
Q Consensus 374 -a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~g-Wr~~f~i~-- 449 (1693)
+++++.++++|+++|++.|...+...+++.|++|+++|++++|+.+.+..+|.+++|++++++.+.+| ||++|++.
T Consensus 115 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~ 194 (451)
T 1pw4_A 115 ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF 194 (451)
T ss_dssp HHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999889999 99988875
Q ss_pred -----------CCccccccc---ccCc--c-------------ccccc---ccchhhHHHH-HHHHHHHHHHhhhhhhhh
Q psy10222 450 -----------PLPQRSYLH---LGNR--L-------------FSFSY---LTGYCLFQLL-AAAGPIFATLGSGMTSGF 496 (1693)
Q Consensus 450 -----------~~p~~~~~~---~~~~--~-------------~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 496 (1693)
..|+.+... ...+ . ...+. ....+.+... ......+..+.......+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (451)
T 1pw4_A 195 CAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDW 274 (451)
T ss_dssp HHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111100 0000 0 00000 0001112222 222222222222223333
Q ss_pred hhhcccc-cccCCC---CcccccchhHHHHHHHHHHhhhhh--chhHHHHHHHHHHH-HHHHHHHhc--chHHHHHHHHH
Q psy10222 497 SAVLLPQ-LESANS---TIPITPEDGSWIACVLSCILMDLY--GRRFTNLILCVPFV-LGWVIMSMA--TEVWLICVGRF 567 (1693)
Q Consensus 497 ~~~~l~~-~~~~~~---~~~~~~~~g~~iG~~~~G~lsDr~--GRk~~l~~~~~~~~-i~~~~~~~~--~~~~~l~~~r~ 567 (1693)
.+.++.+ ++.+.. .+......+.++|+++.|+++||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..+
T Consensus 275 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (451)
T 1pw4_A 275 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI 354 (451)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHH
Confidence 3333332 111111 122334457788999999999999 99998887777666 555555554 36777888888
Q ss_pred HHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHH-HHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHhhc
Q psy10222 568 LTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISS-GIFISHLLGTFL----HWKTASAVCALFPFISCIFVYS 640 (1693)
Q Consensus 568 l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~l-G~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~~~ 640 (1693)
+.|++.+...+...+++.|..|++.||++.++.+....+ |..+++.+.+.+ +|+..+.+.++..++..+..++
T Consensus 355 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 355 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888899999999999999999999999999 999999887665 7899988888877777665544
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.91 E-value=6.5e-24 Score=266.81 Aligned_cols=338 Identities=13% Similarity=0.033 Sum_probs=249.0
Q ss_pred hhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHH---H
Q psy10222 296 FSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIII---S 372 (1693)
Q Consensus 296 ~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~---~ 372 (1693)
+..+......+...|.+.++ +|++.++.+++.+.+.+++.++.++.|++.||+|||++++.+.++++++++++ +
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 112 (438)
T 3o7q_A 36 FLWAVANNLNDILLPQFQQA---FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA 112 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Confidence 34444445566778888888 99999999999999999999999999999999999999999999999999999 8
Q ss_pred hcchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccc-cccC----------
Q psy10222 373 SATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPT-VRHL---------- 441 (1693)
Q Consensus 373 ~a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~-~~~g---------- 441 (1693)
++++++.++++|+++|+|.|...+...++++|++|+++|++++|+.+.+..+|.+++|++++++. +..+
T Consensus 113 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~ 192 (438)
T 3o7q_A 113 EIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKM 192 (438)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHS
T ss_pred ccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998 5555
Q ss_pred ---------------eEEEeecC--------------CCcccccccccCccc-c--cccccchhhHHHHH-HHHHHHHHH
Q psy10222 442 ---------------GLVMALVG--------------PLPQRSYLHLGNRLF-S--FSYLTGYCLFQLLA-AAGPIFATL 488 (1693)
Q Consensus 442 ---------------Wr~~f~i~--------------~~p~~~~~~~~~~~~-~--~~~~~~~~~~~~~~-~~~~~~~~~ 488 (1693)
||+.|++. ..|+.+....+++.. . .......+.+.... .....+...
T Consensus 193 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (438)
T 3o7q_A 193 SPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVG 272 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhChHHHHHHHHHHHHHH
Confidence 99888653 222222111000000 0 00000111122222 222222222
Q ss_pred hhhhhhhhhhhc-cccc-ccCCC---CcccccchhHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHH
Q psy10222 489 GSGMTSGFSAVL-LPQL-ESANS---TIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLIC 563 (1693)
Q Consensus 489 ~~~~~~~~~~~~-l~~~-~~~~~---~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~ 563 (1693)
.......+.+.+ +.+. +.+.. .+......+..+|.++.|+++||+|||+.+..+.++..++.++..+.++.+.++
T Consensus 273 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (438)
T 3o7q_A 273 AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI 352 (438)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 222333344444 3322 11111 122334457788999999999999999999999998888888888887766544
Q ss_pred HHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh----h-hHHHHHHhHHHHHHHHHHh
Q psy10222 564 VGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL----H-WKTASAVCALFPFISCIFV 638 (1693)
Q Consensus 564 ~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~----~-wr~~~~~~~~~~~i~~~~~ 638 (1693)
. -++.|++.+...+...++..|..|++ |+.+.++.. ...+|..+++.+.+.+ + ++..+.+.++..++.++..
T Consensus 353 ~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 429 (438)
T 3o7q_A 353 A-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA 429 (438)
T ss_dssp H-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 4 48889999999999999999999976 888888776 5568888888777655 5 7777776655544444433
Q ss_pred h
Q psy10222 639 Y 639 (1693)
Q Consensus 639 ~ 639 (1693)
+
T Consensus 430 ~ 430 (438)
T 3o7q_A 430 R 430 (438)
T ss_dssp T
T ss_pred H
Confidence 3
No 8
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.91 E-value=9.8e-25 Score=268.31 Aligned_cols=351 Identities=13% Similarity=0.079 Sum_probs=260.6
Q ss_pred HHHHHhHhhhhhhhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHH
Q psy10222 1235 GGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGW 1314 (1693)
Q Consensus 1235 ~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~ 1314 (1693)
..+++..+...++.+...+.+|.+.+ +++.++.+.+++.+.+.++..++++++|+++||+|||++++.+.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMAR---DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 34556677888899999999999885 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhhhchhhhHhHHhhhccCCCcchhhhHHHHHHHHHHHHHHHHhhhhc----hhHHHHHH
Q psy10222 1315 VIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAV 1390 (1693)
Q Consensus 1315 ll~~~a~~~~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~l~~~~~~lG~~lg~~lg~~l----~WR~~f~i 1390 (1693)
++.++++|++.++++|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+ +||+.|++
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 89999999
Q ss_pred hHHHHHHHHH-HhccccCChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHh
Q psy10222 1391 CALFPCASFI-FAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKN 1469 (1693)
Q Consensus 1391 ~~i~~~v~lv-~~~~lpEsp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1469 (1693)
.+++.++..+ ..+++||+|+.. +++ ++.+...++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~--~~~------------------------------------------~~~~~~~~~~ 195 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVD--APR------------------------------------------TRLLTSYKTL 195 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTT--CCC------------------------------------------CCTTTCSTHH
T ss_pred HHHHHHHHHHHHHHHCcccCCCC--ccc------------------------------------------ccHHHHHHHH
Confidence 9988877766 444588886420 000 0001122333
Q ss_pred hcccCchHHHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCC-chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHH
Q psy10222 1470 ILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVGISKE-VSPD-VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALL 1547 (1693)
Q Consensus 1470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s-~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~ 1547 (1693)
++++..+.. ....+...........+.|.+.++ .|.+ .+.+.......++.+++.++.+++.||.+++ ...
T Consensus 196 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~ 268 (375)
T 2gfp_A 196 FGNSGFNCY-----LLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQ 268 (375)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHH
T ss_pred hcCcchHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 333322221 111222233445566677776665 4666 5667777778888899999999999998873 222
Q ss_pred HHHH-HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHHHHHHHHHHH
Q psy10222 1548 SCLG-TCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTLFVVV 1626 (1693)
Q Consensus 1548 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~~~lg~~i~~ 1626 (1693)
+... ...+...+ ..... . .++.+.........++......+....+..|.+| +.|+++.++.+..+.++..+++
T Consensus 269 ~~~~~~~~~~~~~--~~~~~-~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~ 343 (375)
T 2gfp_A 269 SVICCLLAGLLMW--IPDWF-G-VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLA 343 (375)
T ss_dssp HHHHHHHTSSSSS--HHHHH-H-HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHH--HHhhh-c-cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHH
Confidence 2222 11111111 00110 0 1122222223333334444566777888999998 8999999999999999999999
Q ss_pred HHHHHHHHhcCcchhHHH
Q psy10222 1627 KTGPLLFLSIGTPETFGL 1644 (1693)
Q Consensus 1627 ~~~~~l~~~~g~~~~f~i 1644 (1693)
.+.+.+.+..++...+.+
T Consensus 344 ~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 344 SLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp TTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccHHHHH
Confidence 999988887666555544
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.89 E-value=7.2e-23 Score=261.51 Aligned_cols=323 Identities=13% Similarity=0.052 Sum_probs=234.7
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHHHhhhhccc-cCCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhccccch
Q psy10222 318 TIPITTEDASWIASMAALPMAVACVLGCIAMDS-CGRRFSNLILCIPFVLGWIIISSATKVWLLCVGRFLTGLSIGFLTP 396 (1693)
Q Consensus 318 ~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~-~Grr~vl~~~l~~~~~~s~l~~~a~s~~~ll~~R~l~Gig~g~~~~ 396 (1693)
++|.+.++.+++.+.+.++..+++++.|+++|| +|||+++..+.++++++++++++++|+++++++|+++|+|.|...|
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 389999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccCccc--chhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC-----------------CCcccccc
Q psy10222 397 PAIVYIAETSEPKY--RGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG-----------------PLPQRSYL 457 (1693)
Q Consensus 397 ~~~a~i~~~~p~~~--rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~-----------------~~p~~~~~ 457 (1693)
...++++|++|+++ |++++++.+.+..+|..++|++++++.+.+|||++|++. ..+.....
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLR 207 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccC
Confidence 99999999999988 778888899999999999999999999999999988775 00000000
Q ss_pred cccCccc-cc-c-----------------------------------------------------c---ccchhhHHHHH
Q psy10222 458 HLGNRLF-SF-S-----------------------------------------------------Y---LTGYCLFQLLA 479 (1693)
Q Consensus 458 ~~~~~~~-~~-~-----------------------------------------------------~---~~~~~~~~~~~ 479 (1693)
+...... +. + . ...........
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (491)
T 4aps_A 208 PTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIP 287 (491)
T ss_dssp CSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHH
T ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 0000000 00 0 0 00000000111
Q ss_pred -HHHHHHHHHhhhhhhhhhhhcccccccC----CCCcccccchhHHHHHHHHHHhhhhhchhHHHH-----HHHHHHHHH
Q psy10222 480 -AAGPIFATLGSGMTSGFSAVLLPQLESA----NSTIPITPEDGSWIACVLSCILMDLYGRRFTNL-----ILCVPFVLG 549 (1693)
Q Consensus 480 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~g~~iG~~~~G~lsDr~GRk~~l~-----~~~~~~~i~ 549 (1693)
..................+.+..+.... ...+......+.++++++.|++.||+|||+... .+..+..++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~ 367 (491)
T 4aps_A 288 LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLS 367 (491)
T ss_dssp HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 1111111222222222222232221111 112333445577788999999999999986544 666666666
Q ss_pred HHHHHhcc---------hHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh--
Q psy10222 550 WVIMSMAT---------EVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL-- 618 (1693)
Q Consensus 550 ~~~~~~~~---------~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~lG~~~~~~~~~~~-- 618 (1693)
.++..+.. +.+.+.+.-++.|++.+...+...+++.|..|++.||.+.++.+....+|..+++.+.+..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 368 FLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55554432 6677888889999999999999999999999999999999999999999999999887766
Q ss_pred -hhHHHHHHhHHHHHHHHHHhhc
Q psy10222 619 -HWKTASAVCALFPFISCIFVYS 640 (1693)
Q Consensus 619 -~wr~~~~~~~~~~~i~~~~~~~ 640 (1693)
++...+.+.++..++..+..++
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 448 KSEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp SSTTHHHHHTHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655544433
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.88 E-value=6.7e-23 Score=251.91 Aligned_cols=327 Identities=15% Similarity=0.064 Sum_probs=236.6
Q ss_pred HHhhhhhhhhhHhhhhHHhhhccccCCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHHHHHh
Q psy10222 294 GDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISS 373 (1693)
Q Consensus 294 ~~~~~~l~~~~~~~~~P~l~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~l~~~ 373 (1693)
..+..+.........+|.+.++ +|.++++.++..+.+.++..+++++.|+++||+|||+++..+.++.+++++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 8 LVAVGQMAQTIYIPAIADMARD---LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 4455566666666777777776 9999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhhhccccchhhhhhhccccCcccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecC----
Q psy10222 374 ATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVG---- 449 (1693)
Q Consensus 374 a~s~~~ll~~R~l~Gig~g~~~~~~~a~i~~~~p~~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~---- 449 (1693)
+++++.+++.|+++|++.+...+...+++.|++|++||++++|+.+.+..+|..++|++++++.+.+|||+.|++.
T Consensus 85 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (375)
T 2gfp_A 85 TSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC 164 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888754
Q ss_pred ---------CCcccccccccCcccccccccchhhHHHHH-HHHHHHHHHhhhhhhhhhhhcccc-cccCC---CCccccc
Q psy10222 450 ---------PLPQRSYLHLGNRLFSFSYLTGYCLFQLLA-AAGPIFATLGSGMTSGFSAVLLPQ-LESAN---STIPITP 515 (1693)
Q Consensus 450 ---------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~---~~~~~~~ 515 (1693)
..|+.+....+++..........+.+.... .....+..........+.+.++.+ ++.+. ..+....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 244 (375)
T 2gfp_A 165 AGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILP 244 (375)
T ss_dssp HHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHCcccCCCCcccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 112211111110000011111112222222 222222222222223333333322 11111 1123344
Q ss_pred chhHHHHHHHHHHhhhhhchhHHHHHHHHH-HHHHHH--HHHh--cchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCc
Q psy10222 516 EDGSWIACVLSCILMDLYGRRFTNLILCVP-FVLGWV--IMSM--ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEP 590 (1693)
Q Consensus 516 ~~g~~iG~~~~G~lsDr~GRk~~l~~~~~~-~~i~~~--~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~ 590 (1693)
..+.++++++.|++.||+||+. ..+... ...+.. .... .++.+.+.+..++.|++.+...+...+++.|..|
T Consensus 245 ~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p- 321 (375)
T 2gfp_A 245 IPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP- 321 (375)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-
Confidence 5677889999999999999832 223222 222211 1222 2366777788899999999999999999999998
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHH
Q psy10222 591 RYRGAILAIVSLAISSGIFISHLLGTFL----HWKTASAV 626 (1693)
Q Consensus 591 ~~Rg~~~~~~~~~~~lG~~~~~~~~~~~----~wr~~~~~ 626 (1693)
++||++.++.+....+|..+++.+.+.+ +|+..+.+
T Consensus 322 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 322 FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 8999999999999999999988776655 45555544
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.87 E-value=3e-22 Score=249.71 Aligned_cols=370 Identities=12% Similarity=0.029 Sum_probs=233.8
Q ss_pred hhhhhhhhhhhhhcCCCCccCCcchhHHHHHHhHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHH---HHHhhhhH
Q psy10222 1247 AGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWV---IISLATEV 1323 (1693)
Q Consensus 1247 ~~~~~~~~lp~i~~~~~~~~is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~GRr~~ll~~~~l~~i~~l---l~~~a~~~ 1323 (1693)
......+.+|...+ +++|.++.+.+++.+.+.++..++++++|+++||+|||++++.+..++.++.. .+++++..
T Consensus 22 ~~~~~~~~~~~~l~--~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T 2cfq_A 22 IMGAYFPFFPIWLH--DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99 (417)
T ss_dssp HHHHHTTTHHHHHH--TTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666432 36899999999999999999999999999999999999999998887765322 12333322
Q ss_pred -HHHHHHHHHHhhhhhchhhhHhHHhhhccCC--CcchhhhHHHHHHHHHHHHHHHHhhhhc---hhHHHHHHhHHHHHH
Q psy10222 1324 -WVILAGRFLTGFALGLSSPVALVYIAETTEP--KYRGVLSALLCTAVAIGIFTAHLLGTFL---HWKTTSAVCALFPCA 1397 (1693)
Q Consensus 1324 -~~lli~R~l~Gig~g~~~~~~~~~i~e~~p~--~~Rg~~~~l~~~~~~lG~~lg~~lg~~l---~WR~~f~i~~i~~~v 1397 (1693)
..+...|++.|++.|...+.....+.++.++ ++|+...+.......+|..++|.+++++ +||+.|++.+++.++
T Consensus 100 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~ 179 (417)
T 2cfq_A 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALI 179 (417)
T ss_dssp HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 1245667777776666555555555555443 4567777777777888889999888877 799999988877655
Q ss_pred HHHHhcccc-CChHHHHhcCCHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhcccccchhhhhhhhhhhhHhhcccCch
Q psy10222 1398 SFIFAYFTP-ESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFL 1476 (1693)
Q Consensus 1398 ~lv~~~~lp-Esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1476 (1693)
..+..++.| |+|+ +.+.+ +.+ +.+ +++.....+++.++++..+
T Consensus 180 ~~~~~~~~~~~~~~----~~~~~------------~~~------------~~~--------~~~~~~~~~~~~~~~~~~~ 223 (417)
T 2cfq_A 180 LAVLLFFAKTDAPS----SATVA------------NAV------------GAN--------HSAFSLKLALELFRQPKLW 223 (417)
T ss_dssp HHHHSCSSCCCCSC----SSCSS------------SSS------------SSC--------CCCCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCccccc----ccccc------------ccc------------ccc--------cccccHHHHHHHhcCCchh
Confidence 555555544 4431 00000 000 000 0000112234455554433
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCC----chhHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHH
Q psy10222 1477 KPLAIILVFFFVQQFSGLNTLIFYTVGISKEV-SPD----VNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLG 1551 (1693)
Q Consensus 1477 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s----~~~~~~~~~~~i~~~ig~~~~g~l~dr~grr~~l~~~~~~ 1551 (1693)
...+..... ...+.....+.|.++++. +.. ...+.......++.+++.++.+++.||+|||+.+..+...
T Consensus 224 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~ 298 (417)
T 2cfq_A 224 FLSLYVIGV-----SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 222211111 112222333455555442 211 1224445556677888899999999999999988877776
Q ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHH-HHHHHHHHHHHHHHHH
Q psy10222 1552 TCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGIS-TCFAFLTLFVVVKTGP 1630 (1693)
Q Consensus 1552 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~-~~~~~lg~~i~~~~~~ 1630 (1693)
.++..+.+ . ...+.+.......+ .........+..+.+++|.+|++.|+++.+.. +..+.+|++++|.+.+
T Consensus 299 ~~~~~~~~-----~--~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G 370 (417)
T 2cfq_A 299 MSVRIIGS-----S--FATSALEVVILKTL-HMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG 370 (417)
T ss_dssp HHHHHHHH-----T--TCCSHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHH
T ss_pred HHHHHHHH-----H--HhccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHH
Confidence 66654433 1 11222222222222 22222223344567899999999999999995 7888999999999999
Q ss_pred HHHHhcCcchhHHHHHHHHHHHHHHHhhhccCCCCCC
Q psy10222 1631 LLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKT 1667 (1693)
Q Consensus 1631 ~l~~~~g~~~~f~i~~~~~ll~~v~~~~~~~et~~~~ 1667 (1693)
.+.+..|+...|.+.+++.+++.++.++..||+++.+
T Consensus 371 ~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 371 NMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp THHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 9999888888888888888888877776667655443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.86 E-value=4.5e-21 Score=247.02 Aligned_cols=400 Identities=11% Similarity=0.057 Sum_probs=220.5
Q ss_pred CCcchhHHHHHHhHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhchhhhH
Q psy10222 1267 ITPEDGTWIASMASLPTFIACILGSFLMEMY-GRRLTNLVLCIPFIMGWVIISLAT-EVWVILAGRFLTGFALGLSSPVA 1344 (1693)
Q Consensus 1267 is~~~~~~l~s~~~lg~~ig~l~~G~lsDr~-GRr~~ll~~~~l~~i~~ll~~~a~-~~~~lli~R~l~Gig~g~~~~~~ 1344 (1693)
.++.+.+++.+++.++..++++++|+++||+ |||+++..+.++..++.+++++++ |++.++++|+++|++.|...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hHHhhhccCCCcchhhhHH---HHHHHHHHHHHHHHhhhhc----hhHHHHHHhHHHHHHHHHHhccc-cCChHHHHhcC
Q psy10222 1345 LVYIAETTEPKYRGVLSAL---LCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIFAYFT-PESPPWLASKG 1416 (1693)
Q Consensus 1345 ~~~i~e~~p~~~Rg~~~~l---~~~~~~lG~~lg~~lg~~l----~WR~~f~i~~i~~~v~lv~~~~l-pEsp~~l~~~~ 1416 (1693)
.+++.|++|+++|+++.+. ...+.++|.+++|.+++.+ +||+.|++.++..++..+..++. |+.++--.++.
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPK 210 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC----
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCc
Confidence 9999999999999877766 8899999999999998877 89999999988877665554432 22110000000
Q ss_pred CHHHHHHHHH-HHhCCCCchHH--HHHHHHHHh----hhhcccccc----------hhhhhhhhhhhhHh------hc--
Q psy10222 1417 FTVQAQQAFY-WLRGHTAESEF--EFKSMLNHA----ERSTITKSE----------NMTDKKKKLEWKKN------IL-- 1471 (1693)
Q Consensus 1417 ~~~~a~~~l~-~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~----------~~~~~~~~~~~~~~------~~-- 1471 (1693)
+..+..+.+. ..+....+.+. ...+..... .....+... ...+++.+.++++. ..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (524)
T 2xut_A 211 DPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDA 290 (524)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSS
T ss_pred cchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHh
Confidence 0111111110 01111111110 000000000 000000000 00000001111000 00
Q ss_pred ccCchHHHHHHHHHHH--HHHhhhhHHHHHhHHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHHHHHhh----hhcCCh-
Q psy10222 1472 CTEFLKPLAIILVFFF--VQQFSGLNTLIFYTVGISKEVSPDV--NEYTATIVIDIVRVVMAFVTCGLL----RIFGRR- 1542 (1693)
Q Consensus 1472 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~g~s~--~~~~~~~~~~i~~~ig~~~~g~l~----dr~grr- 1542 (1693)
....+++.......+. ......+.....+.+......+.+. ..+.......++.+++..+.+++. +|.++|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (524)
T 2xut_A 291 AVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL 370 (524)
T ss_dssp SSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCC
Confidence 0011122211111111 0001111111111122222222211 233333333344445555555543 443332
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHhh--ccCchHHHHHHHHHHHHHHHhhccccchhhccccCccchhHHHHHHHHHH
Q psy10222 1543 ---PLALLSCLGTCLSLLGVASILKFMQ--GLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCF 1617 (1693)
Q Consensus 1543 ---~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~p~~~r~~a~g~~~~~ 1617 (1693)
+.+..+..+.+++.+.+ ....... ....+........++.+.+.....+..+.+..|..|++.|+++.|+.+..
T Consensus 371 ~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 449 (524)
T 2xut_A 371 TALRKMGAGIAITGLSWIVV-GTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLS 449 (524)
T ss_dssp CCHHHHHTHHHHHHHHHHTT-TTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGG
T ss_pred ChHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHH
Confidence 34455555555554443 1100000 00112222333344444555556677788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc----------Cc-chhHHHHHHHHHHHHHHHhhhccCCCCCC
Q psy10222 1618 AFLTLFVVVKTGPLLFLSI----------GT-PETFGLYGCITAFGFVFLYIFLPETKNKT 1667 (1693)
Q Consensus 1618 ~~lg~~i~~~~~~~l~~~~----------g~-~~~f~i~~~~~ll~~v~~~~~~~et~~~~ 1667 (1693)
..+|+.+++.+.+.+.+.. +. +..|++.+++++++.++.+++.+++++++
T Consensus 450 ~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 450 VTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999876532 21 22377777777777776666666665544
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.81 E-value=1.3e-19 Score=233.50 Aligned_cols=298 Identities=11% Similarity=0.037 Sum_probs=205.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhhhhcccc-CCchhHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHhhhccccchhh
Q psy10222 321 ITTEDASWIASMAALPMAVACVLGCIAMDSC-GRRFSNLILCIPFVLGWIIISSAT-KVWLLCVGRFLTGLSIGFLTPPA 398 (1693)
Q Consensus 321 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~-Grr~vl~~~l~~~~~~s~l~~~a~-s~~~ll~~R~l~Gig~g~~~~~~ 398 (1693)
.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++++++.+++++++ +++.+++.|+++|++.|...|..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hhhhccccCcccchhHHHH---HHHHHHhhHHHHhhhhcccccccCeEEEeecC-------------CCccccc-ccccC
Q psy10222 399 IVYIAETSEPKYRGAFLAV---SSLAISSGILVSHLLDHLPTVRHLGLVMALVG-------------PLPQRSY-LHLGN 461 (1693)
Q Consensus 399 ~a~i~~~~p~~~rg~a~g~---~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~-------------~~p~~~~-~~~~~ 461 (1693)
.+++.|++|+++|+++.+. ...+..+|.+++|++++++.+.+|||++|++. ..+.... .+...
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPK 210 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC----
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCc
Confidence 9999999999999887777 99999999999999999999999999888764 0111000 00000
Q ss_pred ccccc--------ccc----------------------------------------------------------------
Q psy10222 462 RLFSF--------SYL---------------------------------------------------------------- 469 (1693)
Q Consensus 462 ~~~~~--------~~~---------------------------------------------------------------- 469 (1693)
+..+. +..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (524)
T 2xut_A 211 DPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDA 290 (524)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSS
T ss_pred cchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHh
Confidence 00000 000
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhhhhhhccccc-c-cCCC------CcccccchhHHHHHHHHHHhh----hhhchh-
Q psy10222 470 TGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQL-E-SANS------TIPITPEDGSWIACVLSCILM----DLYGRR- 536 (1693)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~~------~~~~~~~~g~~iG~~~~G~ls----Dr~GRk- 536 (1693)
....++.........................++.. . .+.. .+......+.++++.+.+++. ||.|||
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (524)
T 2xut_A 291 AVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL 370 (524)
T ss_dssp SSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCC
Confidence 00000011100000000000001111111111111 0 0110 011222234455555555553 444432
Q ss_pred ---HHHHHHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHHHHHHH
Q psy10222 537 ---FTNLILCVPFVLGWVIMSMA---------TEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAI 604 (1693)
Q Consensus 537 ---~~l~~~~~~~~i~~~~~~~~---------~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~ 604 (1693)
+.+..+.++.+++.++..+. .+.+.+++..++.|++.+...+...+++.|..|++.||++.++.+...
T Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 450 (524)
T 2xut_A 371 TALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSV 450 (524)
T ss_dssp CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHH
Confidence 45666777777766665553 366778888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhh
Q psy10222 605 SSGIFISHLLGTFL 618 (1693)
Q Consensus 605 ~lG~~~~~~~~~~~ 618 (1693)
.+|..+++.+.+..
T Consensus 451 ~~g~~~g~~~~g~~ 464 (524)
T 2xut_A 451 TVGNLWVLLANVSV 464 (524)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887655
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.80 E-value=5.3e-20 Score=229.37 Aligned_cols=325 Identities=12% Similarity=0.052 Sum_probs=216.9
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHH---HHHhcchh-HHHHHHHHHHhhhcccc
Q psy10222 319 IPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWI---IISSATKV-WLLCVGRFLTGLSIGFL 394 (1693)
Q Consensus 319 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~vl~~~l~~~~~~s~---l~~~a~s~-~~ll~~R~l~Gig~g~~ 394 (1693)
+|.++.+.|++.+.+.++..+++++.|+++||+||||+++.+..++++++. .+++++.. ..++.+|++.|++.|..
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 117 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988876432 22344332 23456788888877776
Q ss_pred chhhhhhhccccCc--ccchhHHHHHHHHHHhhHHHHhhhhcccccccCeEEEeecCC-------------Cccccccc-
Q psy10222 395 TPPAIVYIAETSEP--KYRGAFLAVSSLAISSGILVSHLLDHLPTVRHLGLVMALVGP-------------LPQRSYLH- 458 (1693)
Q Consensus 395 ~~~~~a~i~~~~p~--~~rg~a~g~~~~~~~~g~~lgp~lg~~l~~~~gWr~~f~i~~-------------~p~~~~~~- 458 (1693)
++.....+.++.++ ++|+.+.|....+..+|.+++|++++++.+ ++||++|++.. .|+.+...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (417)
T 2cfq_A 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSSAT 196 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSC
T ss_pred HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcccccccc
Confidence 66666667666654 467888899988889999999999999876 68999887751 11110000
Q ss_pred ccCc-c-cccc-c----ccchhhHHHHHHHHH-HHHHHhhhhhhhhhhhcccccccC----CCC---cccccchhHHHHH
Q psy10222 459 LGNR-L-FSFS-Y----LTGYCLFQLLAAAGP-IFATLGSGMTSGFSAVLLPQLESA----NST---IPITPEDGSWIAC 523 (1693)
Q Consensus 459 ~~~~-~-~~~~-~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~----~~~---~~~~~~~g~~iG~ 523 (1693)
.+++ . ...+ . ....+.++....... ............+.+.++.+.... ... .......+..++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 276 (417)
T 2cfq_A 197 VANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM 276 (417)
T ss_dssp SSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHH
Confidence 0000 0 0000 0 000111222211111 111111111111222222221110 100 1112223556788
Q ss_pred HHHHHhhhhhchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhCChhHHHHHHHhccCcchhhHHHHH-HHH
Q psy10222 524 VLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAI-VSL 602 (1693)
Q Consensus 524 ~~~G~lsDr~GRk~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~E~~p~~~Rg~~~~~-~~~ 602 (1693)
++.|+++||+|||+.+..+..+..++.++..+.++.+.+++..++.+++.+...+....++.|..|++.||++.+. ++.
T Consensus 277 ~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 356 (417)
T 2cfq_A 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCF 356 (417)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 9999999999999999888888877777777777778888888888888777777788999999999999999888 488
Q ss_pred HHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHHHhh-cccCC
Q psy10222 603 AISSGIFISHLLGTFL----HWKTASAVCALFPFISCIFVY-STPES 644 (1693)
Q Consensus 603 ~~~lG~~~~~~~~~~~----~wr~~~~~~~~~~~i~~~~~~-~lpES 644 (1693)
...+|..++|.+.+.+ +++..+.+.++..++..+..+ +.||.
T Consensus 357 ~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 357 FKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp THHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 8889998888877654 577788877777776665543 35543
Done!