RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10222
(1693 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 181 bits (462), Expect = 4e-49
Identities = 100/415 (24%), Positives = 193/415 (46%), Gaps = 26/415 (6%)
Query: 1273 TWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLAT--EVWVILAGR 1330
I S+ S+ I + L + +GR+ + L+ + F++G ++ A ++++ GR
Sbjct: 49 GLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGR 108
Query: 1331 FLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL-------H 1383
+ G +G S + +YI+E K RG L +L + GI A ++G L
Sbjct: 109 VIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDG 168
Query: 1384 WKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSML 1443
W+ + + I F PESP WL KG +A+ LRG + + E +
Sbjct: 169 WRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQ-EIQ--- 224
Query: 1444 NHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVG 1503
E+ ++ + + +K W + + L + ++ QQ +G+N + +Y+
Sbjct: 225 --EEKDSL----ERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPT 278
Query: 1504 ISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASIL 1563
I + + + TI++ +V V F+ L+ FGRRPL LL G + L + L
Sbjct: 279 IFETLGLS-DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVAL 337
Query: 1564 KFMQGLLPSFMPVILLMFYMVFVS---IGLQQLPWMMIGELFPQATRELGSGISTCFAFL 1620
+ ++ ++F ++F++ +G +PW+++ ELFP R I+T +L
Sbjct: 338 LGVAK--SKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWL 395
Query: 1621 TLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIEDDF 1675
F++ P++ +IG F ++ + +F++ F+PETK +TL++I++ F
Sbjct: 396 ANFLIGFLFPIITGAIGGY-VFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
Score = 121 bits (305), Expect = 1e-28
Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 23/292 (7%)
Query: 4 ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLG 63
+++ VGR + GL VG S +YI+E + RGA+ ++ L I+ GI ++ ++G
Sbjct: 98 GKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIG 157
Query: 64 TFL-------HWKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHS 116
L W+ + + + I + PESP WL KG EA LRG S
Sbjct: 158 LGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVS 217
Query: 117 AESES--ELKSMLNHAQKITITKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQ 174
+ E K L + + +K W + + ++ ++ QQ
Sbjct: 218 DVDQEIQEEKDSLERSVEA------------EKASWLELFRGKTVRQRLLMGVMLQIFQQ 265
Query: 175 FSGVNTVAFYSVGILKNVSPDVNEYVATMAIDIVRVIMSAVTCGLLRITGRRPLALLSSL 234
+G+N + +YS I + + + + T+ + +V + + + L+ GRRPL LL +
Sbjct: 266 LTGINAIFYYSPTIFETLGLS-DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAA 324
Query: 235 GTAFSLLGLALILKFPQEQLP-SFIPVILLMSYIVFVSVGLVPLPWIMTGEL 285
G A L L + L + + ++ ++ +I F ++G P+PW++ EL
Sbjct: 325 GMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSEL 376
Score = 110 bits (276), Expect = 5e-25
Identities = 64/261 (24%), Positives = 113/261 (43%), Gaps = 25/261 (9%)
Query: 518 GSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMAT--EVWLICVGRFLTGLSVGL 575
G I + + L D +GR+ + LI V FV+G ++ A +++ VGR + GL VG
Sbjct: 58 GCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGG 117
Query: 576 SSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL-------HWKTASAVCA 628
S +YI+E + RGA+ ++ L I+ GI ++ ++G L W+ +
Sbjct: 118 ISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQF 177
Query: 629 LFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHSAESES--ELKSMLNHAQKIT 686
+ + I + PESP WL KG EA LRG S + E K L + +
Sbjct: 178 VPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEA- 236
Query: 687 ITKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQFSGVNTVAFYSVGILKNV-- 744
+K W + + ++ ++ QQ +G+N + +YS I + +
Sbjct: 237 -----------EKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGL 285
Query: 745 SPDVNEYVATMAIDIVRVIIS 765
S + + ++ V I+
Sbjct: 286 SDSLLVTIIVGVVNFVFTFIA 306
Score = 64.6 bits (158), Expect = 2e-10
Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 6/151 (3%)
Query: 285 LLAAMGPIMGDFSSGTAVGFSAVLLPQ----LQSANSTIPITTEDASWIASMAALPMAVA 340
L+AA+G + + +G F ++ ++ +T + I S+ ++ +
Sbjct: 3 LVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIG 62
Query: 341 CVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSAT--KVWLLCVGRFLTGLSIGFLTPPA 398
+ D GR+ S LI + FV+G ++ A ++L VGR + GL +G ++
Sbjct: 63 SLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLV 122
Query: 399 IVYIAETSEPKYRGAFLAVSSLAISSGILVS 429
+YI+E + K RGA ++ L I+ GILV+
Sbjct: 123 PMYISEIAPKKLRGALGSLYQLGITFGILVA 153
Score = 62.7 bits (153), Expect = 8e-10
Identities = 47/248 (18%), Positives = 92/248 (37%), Gaps = 47/248 (18%)
Query: 771 ALCALFPLTSIIFVYFTPESPSWLASKGYTVQAEKAFHWLRGHSDEFDNELKSILDYANS 830
L + + +I + F PESP WL KG +A LRG SD
Sbjct: 174 GLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSD--------------- 218
Query: 831 AEKAFHWLRGHSDEFDNELKSIMDYAQNITITNSEDMNYKEKICEWKKNILSPEFLKPFV 890
E E S+ + + + + W + + +
Sbjct: 219 ----------VDQEIQEEKDSL-------------ERSVEAEKASWLELFRGKTVRQRLL 255
Query: 891 ILLVFFFVQQFSGASTQFSGASTVSFYSVAILQNVSADVNEYTATMAIDILRVIMSAVTC 950
+ ++ QQ +G + F +YS I + + + T+ + ++ + + +
Sbjct: 256 MGVMLQIFQQLTGINAIF-------YYSPTIFETLGLS-DSLLVTIIVGVVNFVFTFIAI 307
Query: 951 GLLRITGRRPIAILSSLGTAFSLLGLALMLKYPQEELP-SFIPVILLMSYIVFVSFGLQP 1009
L+ GRRP+ +L + G A L L + L + + ++ ++ +I F + G P
Sbjct: 308 FLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGP 367
Query: 1010 LPWIMAGE 1017
+PW++ E
Sbjct: 368 VPWVIVSE 375
Score = 44.2 bits (105), Expect = 5e-04
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 15/121 (12%)
Query: 1056 GRRPIAILSTLGTAFSLLGLALMLKYPQEELP-SFIPVILLMSYIVFVSFGVQPLPWIMA 1114
GRRP+ +L G A L L + L + + ++ ++ +I F + G P+PW++
Sbjct: 314 GRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIV 373
Query: 1115 GEVRYFTTYYIIHNHLFPQVTREIGSGITTCFGFLALFCAVKTEPLLFRSIGTPGTFGLY 1174
E LFP R I T +LA F P++ +IG F ++
Sbjct: 374 SE-------------LFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIG-GYVFLVF 419
Query: 1175 G 1175
Sbjct: 420 A 420
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This model
represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 175 bits (446), Expect = 9e-47
Identities = 108/414 (26%), Positives = 199/414 (48%), Gaps = 23/414 (5%)
Query: 1274 WIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISL---ATEVWVILAGR 1330
+ S+ + FI + +L + +GR+ + L++ + F++G +++ L A V +++ GR
Sbjct: 75 LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGR 134
Query: 1331 FLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTA-------HLLGTFLH 1383
L G +G++S + +Y++E RG L++L A+ GI A L L
Sbjct: 135 VLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG 194
Query: 1384 WKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSML 1443
W+ + + F+ +F PESP WL KG +A+++ LRG T+ + E L
Sbjct: 195 WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRG-TSGEDKELLDEL 253
Query: 1444 NHAE-RSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTV 1502
+ + +I K + I + L + +V + QQF+G+N +++Y+
Sbjct: 254 ELIDIKRSIEKRSVQPSWGSLFSSTRRIR-----RRLFLGVVLQWFQQFTGINAIMYYSP 308
Query: 1503 GISKE--VSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVA 1560
I + VS D + +I++ V FV L+ FGRRPL L+ G + L +
Sbjct: 309 TIFENAGVSTDHA-FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG 367
Query: 1561 SILKFM---QGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCF 1617
+ + ++ ++ ++ F ++G +PW+++ E+FP + R G I+
Sbjct: 368 ILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAA 427
Query: 1618 AFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQI 1671
+L F+V P + SIG F +G + G +F+Y FLPETK +TL++I
Sbjct: 428 NWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
Score = 117 bits (295), Expect = 3e-27
Identities = 79/294 (26%), Positives = 137/294 (46%), Gaps = 18/294 (6%)
Query: 4 ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFI----- 58
A V ++ VGR L G+ VG++S +Y++E RGA+ ++ LAI+ GI +
Sbjct: 124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183
Query: 59 --SHLLGTFLHWKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHS 116
L L W+ + + + + ++ PESP WL KG EA ++ LRG S
Sbjct: 184 SGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTS 243
Query: 117 AESESELKSMLNHAQKITITKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQFS 176
E + L + K +I K + I FL ++L +F QQF+
Sbjct: 244 GEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFL---GVVLQWF--QQFT 298
Query: 177 GVNTVAFYSVGILKN--VSPDVNEYVATMAIDIVRVIMSAVTCGLLRITGRRPLALLSSL 234
G+N + +YS I +N VS D ++ ++ + V + V L+ GRRPL L+ +
Sbjct: 299 GINAIMYYSPTIFENAGVSTDHA-FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAA 357
Query: 235 GTAFSLLGLALILKF---PQEQLPSFIPVILLMSYIVFVSVGLVPLPWIMTGEL 285
G A L L ++ + + ++ ++ +I F ++G P+PW++ E+
Sbjct: 358 GMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEI 411
Score = 107 bits (270), Expect = 5e-24
Identities = 68/237 (28%), Positives = 114/237 (48%), Gaps = 15/237 (6%)
Query: 518 GSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIM---SMATEVWLICVGRFLTGLSVG 574
G +I + + L D +GR+ + LI+ + FV+G ++M + A V ++ VGR L G+ VG
Sbjct: 83 GGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVG 142
Query: 575 LSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFI-------SHLLGTFLHWKTASAVC 627
++S +Y++E RGA+ ++ LAI+ GI + L L W+ +
Sbjct: 143 IASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQ 202
Query: 628 ALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHSAESESELKSMLNHAQKITI 687
+ + + ++ PESP WL KG EA ++ LRG S E + L + K +I
Sbjct: 203 LIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSI 262
Query: 688 TKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQFSGVNTVAFYSVGILKNV 744
K + I FL ++L +F QQF+G+N + +YS I +N
Sbjct: 263 EKRSVQPSWGSLFSSTRRIRRRLFL---GVVLQWF--QQFTGINAIMYYSPTIFENA 314
Score = 63.1 bits (154), Expect = 6e-10
Identities = 51/253 (20%), Positives = 95/253 (37%), Gaps = 44/253 (17%)
Query: 769 ASALCALFPLTSIIFVYFTPESPSWLASKGYTVQAEKAFHWLRGHSDEFDNELKSILDYA 828
L + + ++F PESP WL KG +A K+ LRG S E L
Sbjct: 198 PLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLD------ 251
Query: 829 NSAEKAFHWLRGHSDEFDNELKSIMDYAQNITITNSEDMNYKEKICEWKKNILSPEFLKP 888
EL+ I +I + + I FL
Sbjct: 252 -------------------ELELID---IKRSIEKRSVQPSWGSLFSSTRRIRRRLFL-- 287
Query: 889 FVILLVFFFVQQFSGASTQFSGASTVSFYSVAILQNV-SADVNEYTATMAIDILRVIMSA 947
++L +F QF+G + + +YS I +N + + + ++ + + +
Sbjct: 288 -GVVLQWF---------QQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTF 337
Query: 948 VTCGLLRITGRRPIAILSSLGTAFSLLGLALMLK---YPQEELPSFIPVILLMSYIVFVS 1004
V L+ GRRP+ ++ + G A L L ++ + + ++ ++ +I F +
Sbjct: 338 VAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFA 397
Query: 1005 FGLQPLPWIMAGE 1017
G P+PW++ E
Sbjct: 398 MGWGPVPWVIVSE 410
Score = 56.6 bits (137), Expect = 9e-08
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 12/160 (7%)
Query: 278 PWIMTGELLAAMGPIMGDFSSGTAVGFSAVL-----LPQLQSANSTIPITTEDASWIASM 332
+ L+AA+G +M + +G G A+ S + + + + S+
Sbjct: 24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLW----GLVVSI 79
Query: 333 AALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATK---VWLLCVGRFLTGL 389
+ + + D GR+ S LI+ + FV+G I++ A V +L VGR L G+
Sbjct: 80 FLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGI 139
Query: 390 SIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVS 429
+G + +Y++E + RGA ++ LAI+ GILV+
Sbjct: 140 GVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVA 179
Score = 45.4 bits (108), Expect = 2e-04
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 16/123 (13%)
Query: 1056 GRRPIAILSTLGTAFSLLGLALMLK---YPQEELPSFIPVILLMSYIVFVSFGVQPLPWI 1112
GRRP+ ++ G A L L ++ + + ++ ++ +I F + G P+PW+
Sbjct: 347 GRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWV 406
Query: 1113 MAGEVRYFTTYYIIHNHLFPQVTREIGSGITTCFGFLALFCAVKTEPLLFRSIGTPGTFG 1172
+ E +FP R G I +LA F P + SIG G F
Sbjct: 407 IVSE-------------IFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFI 453
Query: 1173 LYG 1175
+G
Sbjct: 454 FFG 456
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 100 bits (250), Expect = 1e-21
Identities = 97/441 (21%), Positives = 187/441 (42%), Gaps = 76/441 (17%)
Query: 1285 IACILGS----FLMEMYGRRLTNLVLCIPFIMGWVIISLATE-------------VWVIL 1327
I CI+G + +GRR + + + F + + S E V +
Sbjct: 66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS-ALGSAWPEFGFTSIGPDNTGYVPEFV 124
Query: 1328 AGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAH------LLGTF 1381
R + G +GL+S ++ +YIAE RG L + A+ G +
Sbjct: 125 IYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGD 184
Query: 1382 LHWKTTSAVCALF-----PCASF-IFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAES 1435
W T +F P F + YF PE+P +L S+G + +QA LR +
Sbjct: 185 ASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRG---KQEQAEGILRKIMGNT 241
Query: 1436 E-----FEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQ 1490
E K L+H ++ K L + ++ + ++L F QQ
Sbjct: 242 LATQALQEIKHSLDHGRKTG----------GKLLMFGVGVIV------IGVMLSVF--QQ 283
Query: 1491 FSGLNTLIFY------TVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPL 1544
F G+N +++Y T+G S +++ TI++ ++ + + + FGR+PL
Sbjct: 284 FVGINVVLYYAPEIFKTLGASTDIA-----LLQTIIVGVINLTFTVLAIMTVDKFGRKPL 338
Query: 1545 ALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQ 1604
++ LG + + + + + Q P + ++ ++FY+ ++ + W+++ E+FP
Sbjct: 339 QIIGALGMAIGMFSLGTAF-YTQA--PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN 395
Query: 1605 ATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETF------GLYGCITAFGFVFLYI 1658
A R I+ ++ + V T P++ + F +YGC+ +F++
Sbjct: 396 AIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 455
Query: 1659 FLPETKNKTLQQIEDDFKSKT 1679
F+PETK KTL+++E ++ +T
Sbjct: 456 FVPETKGKTLEEMEALWEPET 476
Score = 64.7 bits (158), Expect = 2e-10
Identities = 66/294 (22%), Positives = 125/294 (42%), Gaps = 50/294 (17%)
Query: 14 RFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFLH------ 67
R + G+ VGL+S S +YIAE RG +++ AI G + + + F+
Sbjct: 127 RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDAS 186
Query: 68 ------WKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHSAESE- 120
W+ A A+ + + +Y PE+P +L S+G +AE + G++ ++
Sbjct: 187 WLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA 246
Query: 121 -SELKSMLNHAQKITITKTENMVDKKKKREWKKNILSPEFLKPFV-ILLVFFFVQQFSGV 178
E+K L+H +K + L + ++L F QQF G+
Sbjct: 247 LQEIKHSLDHGRK----TGGKL-------------LMFGVGVIVIGVMLSVF--QQFVGI 287
Query: 179 NTVAFYSVGILKNVSPDVNEYVATMAIDIVRVIMSAV--TCGLLRIT-----GRRPLALL 231
N V +Y+ I K + +T + +I+ + T +L I GR+PL ++
Sbjct: 288 NVVLYYAPEIFKTLG------ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII 341
Query: 232 SSLGTAFSLLGLALILKFPQEQLPSFIPVILLMSYIVFVSVGLVPLPWIMTGEL 285
+LG A + L Q P + ++ ++ Y+ ++ P+ W++ E+
Sbjct: 342 GALGMAIGMFSLGTAFYT---QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEI 392
Score = 43.9 bits (104), Expect = 7e-04
Identities = 46/244 (18%), Positives = 86/244 (35%), Gaps = 69/244 (28%)
Query: 782 IFVYFTPESPSWLASKGYTVQAEKAFHWLRGHSDEFDNELKSILDYANSAEKAFHWLRGH 841
+ +YF PE+P +L S+G QAE IL A
Sbjct: 209 MLLYFVPETPRYLMSRGKQEQAE------------------GILRKIMGNTLA------- 243
Query: 842 SDEFDNELKSIMDYAQNITITNSEDMNYKEKICEWKKNILSPEFLKPFV-ILLVFFFVQQ 900
+ Q I + K+ + ++ + ++L F
Sbjct: 244 --------TQAL---QEIKHSLDHGRKTGGKLLMFGVGVI-------VIGVMLSVF---- 281
Query: 901 FSGASTQFSGASTVSFYSVAILQNVSADVNEYTATMAIDILRVIMSAV--TCGLLRIT-- 956
QF G + V +Y+ I + + A +T + +I+ + T +L I
Sbjct: 282 -----QQFVGINVVLYYAPEIFKTLGA------STDIALLQTIIVGVINLTFTVLAIMTV 330
Query: 957 ---GRRPIAILSSLGTAFSLLGLALMLKYPQEELPSFIPVILLMSYIVFVSFGLQPLPWI 1013
GR+P+ I+ +LG A + L Y Q P + ++ ++ Y+ + P+ W+
Sbjct: 331 DKFGRKPLQIIGALGMAIGMFSLGTAF-YTQ--APGIVALLSMLFYVAAFAMSWGPVCWV 387
Query: 1014 MAGE 1017
+ E
Sbjct: 388 LLSE 391
Score = 43.5 bits (103), Expect = 0.001
Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 34/193 (17%)
Query: 566 RFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFLH------ 619
R + G+ VGL+S S +YIAE RG +++ AI G + + + F+
Sbjct: 127 RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDAS 186
Query: 620 ------WKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHSAESE- 672
W+ A A+ + + +Y PE+P +L S+G +AE + G++ ++
Sbjct: 187 WLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA 246
Query: 673 -SELKSMLNHAQKITITKTENMVDKKKKREWKKNILSPEFLKPFV-ILLVFFFVQQFSGV 730
E+K L+H +K + L + ++L F QQF G+
Sbjct: 247 LQEIKHSLDHGRK----TGGKL-------------LMFGVGVIVIGVMLSVF--QQFVGI 287
Query: 731 NTVAFYSVGILKN 743
N V +Y+ I K
Sbjct: 288 NVVLYYAPEIFKT 300
Score = 32.4 bits (74), Expect = 2.1
Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 34/151 (22%)
Query: 1043 IMSTVTCGLLRIT------------GRRPIAILSTLGTAFSLLGLALMLKYPQEELPSFI 1090
++ T+ G++ +T GR+P+ I+ LG A + L Y Q P +
Sbjct: 309 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF-YTQ--APGIV 365
Query: 1091 PVILLMSYIVFVSFGVQPLPWIMAGEVRYFTTYYIIHNHLFPQVTREIGSGITTCFGFLA 1150
++ ++ Y+ + P+ W++ E+ FP R I ++A
Sbjct: 366 ALLSMLFYVAAFAMSWGPVCWVLLSEI-------------FPNAIRGKALAIAVAAQWIA 412
Query: 1151 LFCAVKTEPLLFRSIGTPGTF------GLYG 1175
+ T P++ ++ F +YG
Sbjct: 413 NYFVSWTFPMMDKNSWLVAHFHNGFSYWIYG 443
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 95.1 bits (237), Expect = 1e-20
Identities = 91/358 (25%), Positives = 151/358 (42%), Gaps = 25/358 (6%)
Query: 293 MGDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCG 352
+G F SG G + LP L ++ A I S +L A+ +L D G
Sbjct: 6 LGFFLSGLDRGLLSPALPLLAEDLG---LSASQAGLIVSAFSLGYALGSLLAGYLSDRFG 62
Query: 353 RRFSNLILCIPFVLGWIIISSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRG 412
RR L+ + F LG ++++ A+ +WLL VGRFL GL G L P A IAE PK RG
Sbjct: 63 RRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERG 122
Query: 413 AFLAVSSLAISSGILV----SHLLDHLPTVRHLGLVMALVGPL--PQRSYLHLGNRLFSF 466
L + S G L+ LL R L L++A++G L +L L +
Sbjct: 123 RALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLAL 182
Query: 467 SYLTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQLESANSTIPITPEDGSWIACVLS 526
++ + L P++ G+++ + +LL S + G + +L
Sbjct: 183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLL-------SLFGL----GGILGALLG 231
Query: 527 CILMDLYGRRFTNLILCVPF-VLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIA 585
+L D GRR L++ + LG +++++A + L+ V L G +G + P + +
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLAS 291
Query: 586 ESTEPRYRGAILAIVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFISCIFVY 639
E P RG + + S G + LL L + + A ++ + +
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349
Score = 65.8 bits (161), Expect = 6e-11
Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 4/173 (2%)
Query: 1238 LTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMY 1297
L L +G +L P L + ++ I S SL + +L +L + +
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF 61
Query: 1298 GRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYR 1357
GRR L+ + F +G ++++ A+ +W++L GRFL G G P A IAE PK R
Sbjct: 62 GRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKER 121
Query: 1358 GVLSALLCTAVAIGIFTAHLLGTFLH----WKTTSAVCALFPCASFIFAYFTP 1406
G L +G LLG L W+ + A+ + F
Sbjct: 122 GRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
Score = 51.5 bits (124), Expect = 2e-06
Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 9/187 (4%)
Query: 1475 FLKPLAIILVFFFVQQFSGLNTLIFYTVGISKEV--SPDVNEYTATIVIDIVRVVMAFVT 1532
FL L ++L F G L+ Y +EV + + ++ A +
Sbjct: 172 FLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG 231
Query: 1533 CGLLRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQ 1592
L GRR L LL L L + L PS +++ + + F
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLL-------ALAPSLALLLVALLLLGFGLGFAFP 284
Query: 1593 LPWMMIGELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFG 1652
+ EL P R SG+ F L + LL + G F + +
Sbjct: 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLA 344
Query: 1653 FVFLYIF 1659
+ L +
Sbjct: 345 ALLLLLL 351
Score = 51.2 bits (123), Expect = 3e-06
Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 5/165 (3%)
Query: 1247 AGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVL 1306
+ Y +L + ++ + + S+ L + +LG L + GRR L++
Sbjct: 188 SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLI 247
Query: 1307 CIPFIM-GWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLC 1365
+ G ++++LA + ++L L GF LG + P L +E P+ RG S L
Sbjct: 248 GLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFN 307
Query: 1366 TAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIFAYFTP 1406
T ++G LL L + + A + + P
Sbjct: 308 TFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
Score = 47.7 bits (114), Expect = 3e-05
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 1 MSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISH 60
++ A+ +WL+ VGRFL GL G P + IAE P+ RG L + S G +
Sbjct: 81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGP 140
Query: 61 LLGTFLH----WKTASAVCALFPFISCIFVY 87
LLG L W+ + A+ + + +
Sbjct: 141 LLGGLLAESLGWRWLFLILAILGLLLALLLL 171
Score = 38.1 bits (89), Expect = 0.037
Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 9/182 (4%)
Query: 1481 IILVFFFVQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVI-DIVRVVMAFVTCGLLRIF 1539
++L F L +++++ ++ + + + + + L F
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF 61
Query: 1540 GRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIG 1599
GRR + LL L L L +A S +++ F + L +I
Sbjct: 62 GRRRVLLLGLLLFALGSLLLA--------FASSLWLLLVGRFLLGLGGGALYPAAAALIA 113
Query: 1600 ELFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIF 1659
E FP R G+ + L + G LL S+G F + + + L
Sbjct: 114 EWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFL 173
Query: 1660 LP 1661
L
Sbjct: 174 LR 175
Score = 36.1 bits (84), Expect = 0.15
Identities = 47/317 (14%), Positives = 103/317 (32%), Gaps = 51/317 (16%)
Query: 164 VILLVFFFVQQFSGVNTVAFYSVGILKNVSPDVNEYVATMAI-DIVRVIMSAVTCGLLRI 222
++LL F ++ + +++ ++ ++ + + S + L
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 223 TGRRPLALLSSLGTAFSLLGLALILK-----------------------------FPQEQ 253
GRR + LL L A L LA FP ++
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120
Query: 254 LPSFIPVILLMSYI----------VFVSVGLVPLPWIMTGELLAAMGPIM---------- 293
+ + + + +++ L + ++
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLL 180
Query: 294 GDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGR 353
+ G+ +L + ++ +A + S+ L + +LG + D GR
Sbjct: 181 ALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR 240
Query: 354 RFSNLILCIPF-VLGWIIISSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRG 412
R L++ + LG ++++ A + LL V L G +GF P + +E + P+ RG
Sbjct: 241 RRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARG 300
Query: 413 AFLAVSSLAISSGILVS 429
+ + S G +
Sbjct: 301 TASGLFNTFGSLGGALG 317
Score = 35.0 bits (81), Expect = 0.29
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 1 MSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISH 60
+++A + L+ V L G +G + P + +E P RG + + S G +
Sbjct: 259 LALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGP 318
Query: 61 LLGTFL----HWKTASAVCALFPFISCIFVY 87
LL L + + A ++ + +
Sbjct: 319 LLAGLLLDTGGYGGVFLILAALALLAALLLL 349
Score = 30.4 bits (69), Expect = 9.4
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 5/122 (4%)
Query: 159 FLKPFVILLVFFFVQQFSGVNTVAFYSVGILKNV--SPDVNEYVATMAIDIVRVIMSAVT 216
L+ ++L + FF+ F G + Y L+ V + + ++ + +
Sbjct: 173 LLRLLLLLALAFFLLSF-GYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG 231
Query: 217 CGLLRITGRRPLALLSSLGTAFSLLGLALILKFPQEQLPSFIPVILLMSYIVFVSVGLVP 276
L GRR L LL +G + LGL L+ P L ++L L
Sbjct: 232 GLLSDRLGRRRLLLL--IGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTL 289
Query: 277 LP 278
Sbjct: 290 AS 291
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 505
Score = 83.9 bits (208), Expect = 2e-16
Identities = 92/410 (22%), Positives = 157/410 (38%), Gaps = 49/410 (11%)
Query: 1274 WIASMASLPTFIACILGSF----LMEMYGRR----LTNLVLCIPFIMGWVIISLATEVWV 1325
W + F+ +LGSF L + +GR+ L+ LV + G + + V
Sbjct: 127 WKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAV---SGVLTA-FSPNYTV 182
Query: 1326 ILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL-HW 1384
L R L G +G A+V E K R ++ L+ ++G+ L+ F+ W
Sbjct: 183 FLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDW 242
Query: 1385 KTTSAVCALFPCASFIFAY-FTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSML 1443
+ +L P F F PESP WL S+G +A + R K +
Sbjct: 243 RWLQLAVSL-PTFLFFLLSWFVPESPRWLISQGRIEEALKIL--QRIAKING----KKLP 295
Query: 1444 NHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTVG 1503
++ K + KK ++ T L+ + L+ + F+ +Y G
Sbjct: 296 AEVLSLSLEKDLSS---SKKQYSFLDLFRTPNLRKTTLCLMMLW---FT--TAFSYY--G 345
Query: 1504 ISKEVSP-DVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASI 1562
+ ++ N Y + +V + +T L+ GRR + L L GVA +
Sbjct: 346 LVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRY-----TMAASLLLAGVALL 400
Query: 1563 LKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFA---- 1618
L + F+ L + ++ Q + ++ EL+P R LG G+ + A
Sbjct: 401 LLLFVPVDLYFLRTALAVLGKFGITSAFQMV-YLYTAELYPTVVRNLGVGVCSTMARVGS 459
Query: 1619 FLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTL 1668
++ F+V LFL L+G + + +FLPETK L
Sbjct: 460 IISPFLVYLGEKWLFL------PLVLFGGLALLAGILT-LFLPETKGVPL 502
Score = 51.9 bits (125), Expect = 2e-06
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 529 LMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAEST 588
L D +GR+ L+ + + V+ + + + V R L G+ +G ++V E
Sbjct: 150 LSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFL 209
Query: 589 EPRYRGAILAIVSLAISSGIFISHLLGTFL-HWKTASAVCALFPFISCIFVYSTPESPSW 647
+ R + ++ + S G+ + L+ F+ W+ +L F+ + + PESP W
Sbjct: 210 PKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRW 269
Query: 648 LASKGYSVEAEQA 660
L S+G EA +
Sbjct: 270 LISQGRIEEALKI 282
Score = 45.8 bits (109), Expect = 2e-04
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 1 MSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISH 60
+ + + V R L G+ +G ++V E + R + ++ + S G+ +
Sbjct: 174 TAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLP 233
Query: 61 LLGTFL-HWKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQA 108
L+ F+ W+ +L F+ + + PESP WL S+G EA +
Sbjct: 234 LVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKI 282
Score = 31.5 bits (72), Expect = 4.6
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 340 ACVLGCIAMDSCGRR----FSNLILCIPFVLGWIIISSATKVWLLCVGRFLTGLSIGFLT 395
+ V G ++ D GR+ S L+ + G + S + V R L G+ IG +
Sbjct: 144 SFVFGYLS-DRFGRKKVLLLSTLVTAV---SGVLTAFSPN-YTVFLVFRLLVGMGIGGIW 198
Query: 396 PPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHL-PTVRHLGLVMAL 447
A+V E K R + + S G+++ L+ + P R L L ++L
Sbjct: 199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSL 251
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 70.5 bits (173), Expect = 2e-12
Identities = 78/342 (22%), Positives = 119/342 (34%), Gaps = 28/342 (8%)
Query: 296 FSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRF 355
F +G LP + + I T + + +L A+A L D GRR
Sbjct: 6 FLAGLGRSLLGPALPLYLAEDLGISPTE--IGLLLTAFSLGYALAQPLAGRLSDRFGRRR 63
Query: 356 SNLILCIPFVLGWIIISSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFL 415
LI + F LG +++ A+ +WLL V R L GL G L P A IA+ P+ RG L
Sbjct: 64 VLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRAL 123
Query: 416 AVSSLAISSGI----LVSHLLDHLPTVRHLGLVMALVGPL------------PQRSYLHL 459
+ S G L+ LL L R L++A++ L P S
Sbjct: 124 GLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPK 183
Query: 460 GNRLFSFSYLTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLP----QLESANSTIPITP 515
+ + L + A L G LP L + +
Sbjct: 184 PAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLL 243
Query: 516 EDGSWIACVLSCI---LMDLYGRRFT---NLILCVPFVLGWVIMSMATEVWLICVGRFLT 569
+ + + L D GRR L+L + LG ++S+ + V L
Sbjct: 244 GLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLL 303
Query: 570 GLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFIS 611
G GL P +++ RG + + A S G +
Sbjct: 304 GFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345
Score = 57.4 bits (139), Expect = 3e-08
Identities = 67/359 (18%), Positives = 126/359 (35%), Gaps = 52/359 (14%)
Query: 1267 ITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVI 1326
I+P + + + SL +A L L + +GRR L+ + F +G +++ A+ +W++
Sbjct: 29 ISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLL 88
Query: 1327 LAGRFLTGFALGLSSPVALVYIAETTEPKYR----GVLSALLCTAVAIGIFTAHLLGTFL 1382
L R L G G P A IA+ P+ R G+LSA A+G LL +
Sbjct: 89 LVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLF 148
Query: 1383 HWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSM 1442
W+ + A+ + + A ++
Sbjct: 149 GWRAAFLILAILALLAAVLAAL--------------------LLPRPPPESK-------- 180
Query: 1443 LNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTV 1502
+ K +L L L +L+F F ++ V
Sbjct: 181 ---------RPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEV 231
Query: 1503 -GISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVAS 1561
G+S ++ + + + + L GRR LL+ L L+ LG+A
Sbjct: 232 LGLSALLAGLLLGLAGLLGA-----IGRLLLGRLSDRLGRRRRLLLALLLLILAALGLAL 286
Query: 1562 ILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFL 1620
+ L S + +++ + + F + + ++ +L P+ R SG+ L
Sbjct: 287 L-----SLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSL 340
Score = 55.5 bits (134), Expect = 1e-07
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 518 GSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSS 577
G +A L+ L D +GRR LI + F LG +++ A+ +WL+ V R L GL G
Sbjct: 44 GYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALF 103
Query: 578 PPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFL----HWKTASAVCALFPFI 633
P + IA+ P RG L ++S G + LLG L W+ A + A+ +
Sbjct: 104 PAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALL 163
Query: 634 SCIFVY 639
+ +
Sbjct: 164 AAVLAA 169
Score = 43.6 bits (103), Expect = 7e-04
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 1 MSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISH 60
+ A+ +WL+ V R L GL G P + IA+ P RG L ++S G +
Sbjct: 79 LLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGP 138
Query: 61 LLGTFL----HWKTASAVCALFPFISCIFVY 87
LLG L W+ A + A+ ++ +
Sbjct: 139 LLGGLLASLFGWRAAFLILAILALLAAVLAA 169
Score = 39.7 bits (93), Expect = 0.012
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 1267 ITPEDGTWIASMASLPTFIACILGSFLMEMYGRR---LTNLVLCIPFIMGWVIISLATEV 1323
++ + +A L I +L L + GRR L L+L I +G ++SL
Sbjct: 234 LSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESS 293
Query: 1324 WVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTA 1375
+L L GF GL P +++ + RG S L TA ++G
Sbjct: 294 LWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345
Score = 36.6 bits (85), Expect = 0.10
Identities = 33/184 (17%), Positives = 54/184 (29%), Gaps = 9/184 (4%)
Query: 1481 IILVFFFVQQFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFG 1540
+ F S L + + +SP T + + + L FG
Sbjct: 2 FLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFS-LGYALAQPLAGRLSDRFG 60
Query: 1541 RRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGE 1600
RR + L+ L L LL + S +++L L +I +
Sbjct: 61 RRRVLLIGLLLFALGLLLLLFA--------SSLWLLLVLRVLQGLGGGALFPAAAALIAD 112
Query: 1601 LFPQATRELGSGISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFL 1660
FP R G+ + L + G LL G F + + V + L
Sbjct: 113 WFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLL 172
Query: 1661 PETK 1664
P
Sbjct: 173 PRPP 176
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 58.5 bits (142), Expect = 2e-08
Identities = 44/205 (21%), Positives = 80/205 (39%), Gaps = 19/205 (9%)
Query: 529 LMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAEST 588
L D GRR L + F + ++ ++AT V + + RFL GL +G P ++E
Sbjct: 75 LADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYA 134
Query: 589 EPRYRGAILAIV----SLAISSGIFISHLLGTFLHWKTASAVCALFPFISCIFVYST-PE 643
R+RG + ++ + + G F++ L W++ V + P + + + PE
Sbjct: 135 PKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPE 194
Query: 644 SPSWLASKGYSVEAEQAFHWLRGHSAESESELKSMLNHAQKITITKTENMVDKKKKREWK 703
S +L SK AE++S L E + KR
Sbjct: 195 SIDFLVSKRPETVRRIVNAIAPQMQAEAQSAL--------------PEQKATQGTKRSVF 240
Query: 704 KNILSPEFLKPFVILLVFFFVQQFS 728
K + + + V+L + +F+
Sbjct: 241 KALFQGKTARITVLLWLLYFMLLVG 265
Score = 55.1 bits (133), Expect = 2e-07
Identities = 62/306 (20%), Positives = 111/306 (36%), Gaps = 36/306 (11%)
Query: 4 ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIV----SLAISSGIFIS 59
AT V + + RFL GL +G P ++E R+RG + ++ + + G F++
Sbjct: 102 ATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLA 161
Query: 60 HLLGTFLHWKTASAVCALFPFISCIFVYST-PESPSWLASKGYSVEAEQAFHWLRGHSAE 118
L W++ V + P + + + PES +L SK AE
Sbjct: 162 GWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAE 221
Query: 119 SESELKSMLNHAQKITITKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQFSGV 178
++S L E + KR K + + + V+L + +F+ GV
Sbjct: 222 AQSAL--------------PEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLV-GV 266
Query: 179 NTVAFYSVGILKNVSPDVNEYVATMAIDIVRVIMSAVTCGLLRIT-GRRPLALLSSLGTA 237
+ + ++ + ++ A+ ++ ++ G L G R ALL LG
Sbjct: 267 YFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAV 326
Query: 238 FSLLGLALILKFPQEQLPSFIPVILLMSYIVFVSVGLVPLPWIMTGELLAAMGPIMGDFS 297
F++L + + F P +LL + + G L A M
Sbjct: 327 FAVLVGSTL----------FSPTLLL--LLGAI-AGFFVN--GGQSGLYALMALFYPTAI 371
Query: 298 SGTAVG 303
T VG
Sbjct: 372 RATGVG 377
Score = 54.3 bits (131), Expect = 3e-07
Identities = 70/359 (19%), Positives = 123/359 (34%), Gaps = 43/359 (11%)
Query: 1267 ITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVI 1326
+ P ++ S + + L + GRR L + F + ++ +LAT V +
Sbjct: 49 LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQL 108
Query: 1327 LAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL---- 1382
L RFL G LG P ++E ++RG L+ IG L +L
Sbjct: 109 LILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF 168
Query: 1383 HWKTTSAVCALFPCASFIF-AYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKS 1441
W++ V + P + F PES +L SK + AE++
Sbjct: 169 GWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSAL-- 226
Query: 1442 MLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFS--GLNTLIF 1499
E + K K + + + ++ + +F+ L +
Sbjct: 227 ------------PEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLP 274
Query: 1500 YTVGISKEVSPDVNEYTATIVIDIVRVVMAF---VTCGLLRIFGRRPLALLSCLGTCLSL 1556
+ E+ ++ A + + L G R ALL LG ++
Sbjct: 275 K---LMVELGFSLSL--AATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAV 329
Query: 1557 LGVASILKFMQGLLPSFMPVILLMFYMV---FVSIGLQQLPWMMIGELFPQATRELGSG 1612
L +++ F P +LL+ + FV+ G L +M +P A R G G
Sbjct: 330 LVGSTL----------FSPTLLLLLGAIAGFFVNGGQSGLYALM-ALFYPTAIRATGVG 377
Score = 44.3 bits (105), Expect = 4e-04
Identities = 27/112 (24%), Positives = 46/112 (41%)
Query: 321 ITTEDASWIASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLL 380
+ ++ S + MA + D GRR L + F + ++ + AT V L
Sbjct: 49 LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQL 108
Query: 381 CVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLL 432
+ RFL GL +G L P ++E + ++RG + + G V L
Sbjct: 109 LILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL 160
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 46.1 bits (110), Expect = 2e-05
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 5/140 (3%)
Query: 1272 GTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRF 1331
G +A A L I L L + +GR+ LV F++ + +L++ + V++ RF
Sbjct: 1 GLLLAGYA-LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARF 59
Query: 1332 LTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWKTT 1387
L GF + IA+ P+ RGV L+ +A+G LG L W+
Sbjct: 60 LQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAP 119
Query: 1388 SAVCALFPCASFIFAYFTPE 1407
A+ A+FI F
Sbjct: 120 FLFLAILALAAFILLAFLLP 139
Score = 41.5 bits (98), Expect = 5e-04
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 525 LSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYI 584
LS +L D +GR+ L+ FVL + ++++ + ++ + RFL G + I
Sbjct: 17 LSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALI 76
Query: 585 AESTEPRYRGAILAIVSLAISSGIFISHLLGTFL 618
A+ P RG L ++S I+ G + LG L
Sbjct: 77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVL 110
Score = 35.3 bits (82), Expect = 0.085
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 329 IASMAALPMAVACVLGCIAMDSCGRRFSNLILCIPFVLGWIIISSATKVWLLCVGRFLTG 388
+A A + + + G + D GR+ L+ FVL + + ++ + +L + RFL G
Sbjct: 4 LAGYALGQLIYSPLSGLLT-DRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQG 62
Query: 389 LSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLL 432
F IA+ P+ RG L + S I+ G L+ L
Sbjct: 63 FGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPL 106
Score = 30.7 bits (70), Expect = 3.1
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 4 ATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLG 63
++ + ++ + RFL G + IA+ P RG L ++S I+ G + LG
Sbjct: 48 SSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLG 107
Query: 64 TFL 66
L
Sbjct: 108 GVL 110
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 45.7 bits (108), Expect = 2e-04
Identities = 46/178 (25%), Positives = 70/178 (39%), Gaps = 21/178 (11%)
Query: 1258 LESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVII 1317
L SA + I + + L + L + GR+ L++C+ +
Sbjct: 190 LPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRK-QCLLICLSVNGFFAFF 248
Query: 1318 SLATEVW-VILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAI-GIFTA 1375
S + + L R L+GF +G + P+ Y AE + RG + LC I GI+ A
Sbjct: 249 SSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAA 308
Query: 1376 HL-------------LGT---FLHWKTTSAVCALFPCASFIFAY-FTPESPPWLASKG 1416
+ +G+ F W+ VCA FPC I A F PESP + G
Sbjct: 309 AMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCA-FPCVFAIGALTFMPESPRFFLENG 365
Score = 36.1 bits (83), Expect = 0.18
Identities = 34/128 (26%), Positives = 49/128 (38%), Gaps = 12/128 (9%)
Query: 292 IMGDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSC 351
+M D VGF +LP SA + I + + L M V D
Sbjct: 176 LMADGVEVFVVGF---VLP---SAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL 229
Query: 352 GRRFSNLILCIPFVLGWIIISSATK---VWLLCVGRFLTGLSIGFLTPPAIVYIAETSEP 408
GR+ L++C+ + SS + +L C R L+G IG P Y AE
Sbjct: 230 GRKQC-LLICLSVNGFFAFFSSFVQGYGFFLFC--RLLSGFGIGGAIPIVFSYFAEFLAQ 286
Query: 409 KYRGAFLA 416
+ RG L+
Sbjct: 287 EKRGEHLS 294
Score = 32.3 bits (73), Expect = 3.1
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 21/116 (18%)
Query: 8 WLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILA-IVSLAISSGIFISHL----- 61
+L C R L+G +G + P Y AE RG L+ + + GI+ + +
Sbjct: 258 FLFC--RLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII 315
Query: 62 --------LGT---FLHWKTASAVCALFPFISCIFVYST-PESPSWLASKGYSVEA 105
+G+ F W+ VCA FP + I + PESP + G EA
Sbjct: 316 PHYGWSFQMGSAYQFHSWRVFVIVCA-FPCVFAIGALTFMPESPRFFLENGKHDEA 370
Score = 32.3 bits (73), Expect = 3.1
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 21/116 (18%)
Query: 560 WLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILA-IVSLAISSGIFISHL----- 613
+L C R L+G +G + P Y AE RG L+ + + GI+ + +
Sbjct: 258 FLFC--RLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII 315
Query: 614 --------LGT---FLHWKTASAVCALFPFISCIFVYST-PESPSWLASKGYSVEA 657
+G+ F W+ VCA FP + I + PESP + G EA
Sbjct: 316 PHYGWSFQMGSAYQFHSWRVFVIVCA-FPCVFAIGALTFMPESPRFFLENGKHDEA 370
>gnl|CDD|183255 PRK11646, PRK11646, multidrug resistance protein MdtH; Provisional.
Length = 400
Score = 45.1 bits (107), Expect = 2e-04
Identities = 25/82 (30%), Positives = 40/82 (48%)
Query: 548 LGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSG 607
G+ M++A E WL+ + L+GL L PP + + P RG +++ + S+G
Sbjct: 88 AGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAG 147
Query: 608 IFISHLLGTFLHWKTASAVCAL 629
I LLG++L VCA
Sbjct: 148 AVIGALLGSWLLQYDFRLVCAT 169
Score = 40.4 bits (95), Expect = 0.007
Identities = 24/77 (31%), Positives = 38/77 (49%)
Query: 1 MSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISH 60
M++A E WL+ + L+GL L PP + + P RG +++ + S+G I
Sbjct: 93 MAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGA 152
Query: 61 LLGTFLHWKTASAVCAL 77
LLG++L VCA
Sbjct: 153 LLGSWLLQYDFRLVCAT 169
Score = 32.7 bits (75), Expect = 1.9
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 366 LGWIIISSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSG 425
G+ ++ A + WLL + L+GL PP + + P RG F ++ + S+G
Sbjct: 88 AGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAG 147
Query: 426 ILVSHLL 432
++ LL
Sbjct: 148 AVIGALL 154
Score = 30.8 bits (70), Expect = 6.1
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 1313 GWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGI 1372
G+ +++A E W++ L+G L P + + P RG +LL + G
Sbjct: 89 GFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGA 148
Query: 1373 FTAHLLGTFLHWKTTSAVC----ALFPCASFIFAYFTP 1406
LLG++L VC LF A+ A+ P
Sbjct: 149 VIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLP 186
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and
metabolism].
Length = 394
Score = 44.5 bits (106), Expect = 4e-04
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Query: 1297 YGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKY 1356
RR L L FI+ ++ +LA V+L R L G A G+ +A A P
Sbjct: 75 LERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK 134
Query: 1357 RGVLSALLCTAVAIGIFTAHLLGTFL----HWKTTSAVCALFPCASFIFAYFT 1405
RG AL+ T + + LGTFL W+ T A+ + + +
Sbjct: 135 RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKL 187
Score = 43.8 bits (104), Expect = 7e-04
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 519 SWIACVLSCILMDL---YGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGL 575
+ + + +L L RR L L F++ ++ ++A ++ + R L GL+ G+
Sbjct: 58 ALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGV 117
Query: 576 SSPPSIVYIAESTEPRYRGAILAIV----SLAISSGIFISHLLGTFLHWKTA 623
+ A P RG LA+V +LA G+ + LG W+
Sbjct: 118 FWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRAT 169
Score = 40.3 bits (95), Expect = 0.009
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Query: 293 MGDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCG 352
+ F+ GT LLP + + + ++ A + + AL +A+ L +
Sbjct: 20 LAAFAIGTTEFVPVGLLPPIAA---DLGVSEGAAGQLITAYALGVALGAPLLALLTGRLE 76
Query: 353 RRFSNLILCIPFVLGWIIISSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRG 412
RR L L F++ ++ + A +L + R L GL+ G A A P RG
Sbjct: 77 RRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRG 136
Query: 413 AFLAV 417
LA+
Sbjct: 137 RALAL 141
Score = 35.7 bits (83), Expect = 0.21
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 2 SMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIV----SLAISSGIF 57
++A ++ + R L GL+ G+ + A P RG LA+V +LA G+
Sbjct: 96 ALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVP 155
Query: 58 ISHLLGTFLHWKTA 71
+ LG W+
Sbjct: 156 LGTFLGQLFGWRAT 169
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 38.1 bits (89), Expect = 0.032
Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 15/133 (11%)
Query: 525 LSCILMDLYGRR---FTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSI 581
+ + D R LILC L +T +W++ L G+ G+ PP
Sbjct: 49 VMGSVSDRSNPRVFLPIGLILCAIVNLF---FGFSTSLWVMAALWALNGIFQGMGWPPCG 105
Query: 582 VYIAESTEPRYRGAILAIVSLAIS-SGIFISHLLGT----FLHWKT----ASAVCALFPF 632
+ + RG ++ + + + G + L+ W + +
Sbjct: 106 RTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSL 165
Query: 633 ISCIFVYSTPESP 645
I + + +P+S
Sbjct: 166 ICFLLLRDSPQSC 178
Score = 38.1 bits (89), Expect = 0.036
Identities = 66/385 (17%), Positives = 124/385 (32%), Gaps = 58/385 (15%)
Query: 1252 AVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFI 1311
A+ +P L I ++ D + S S IA + F+M R V +
Sbjct: 15 ALAMPYLVE---EIGLSKTDLGLLLSSFS----IAYGISKFVMGSVSDRSNPRVFLPIGL 67
Query: 1312 MGWVIISL----ATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTA 1367
+ I++L +T +WV+ A L G G+ P + + RG + +
Sbjct: 68 ILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCS 127
Query: 1368 VAI-GIFTAHLLGT----FLHWKT----TSAVCALFPCASFIFAYFTPESPPWLASKGFT 1418
+ G L+ W + + S I +SP S G
Sbjct: 128 HNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIV---SLICFLLLRDSP---QSCGLP 181
Query: 1419 VQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKP 1478
+E + K E +T K+ L++ +L + L
Sbjct: 182 ---------------PAEEMPNEEPDGD---AEKKEEELTKKQIFLQY---VLLNKVLWY 220
Query: 1479 LAIILVFFFVQQF---SGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGL 1535
+++ VF +V + + G SKE + A + ++ +V + L
Sbjct: 221 ISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKAS-----WAFTLYELGGLVGTLLAGWL 275
Query: 1536 LRIFGRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPW 1595
L+ L ++ + ++ +F + F+ G Q L
Sbjct: 276 SDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLM---DLICLFALGFLVYGPQMLIG 332
Query: 1596 MMIGELFPQATRELGSGISTCFAFL 1620
++ EL P+ +G FA+L
Sbjct: 333 VIASELAPKKAAGTAAGFVGFFAYL 357
Score = 37.0 bits (86), Expect = 0.092
Identities = 15/102 (14%), Positives = 36/102 (35%), Gaps = 9/102 (8%)
Query: 1 MSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAIS-SGIFIS 59
+T +W++ L G+ G+ PP + + RG ++ + + + G +
Sbjct: 77 FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLP 136
Query: 60 HLLGT----FLHWKT----ASAVCALFPFISCIFVYSTPESP 93
L+ W + + I + + +P+S
Sbjct: 137 PLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC 178
Score = 32.7 bits (75), Expect = 1.7
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 9/115 (7%)
Query: 306 AVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRR---FSNLILCI 362
A+ +P L I ++ D + S ++ ++ + D R LILC
Sbjct: 15 ALAMPYLVE---EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCA 71
Query: 363 PFVLGWIIISSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAV 417
L +T +W++ L G+ G PP + + RG +++
Sbjct: 72 IVNLF---FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSF 123
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 36.9 bits (86), Expect = 0.099
Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 13/157 (8%)
Query: 1274 WIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLAT-EVW---VILAG 1329
W S L +LG L + GR+ +V F G + SLAT + W +L
Sbjct: 54 WAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF--G--LFSLATAQAWDFPSLLVA 109
Query: 1330 RFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL----HWK 1385
R LTG LG + P + +E P+ RG +L+ V G A ++G W+
Sbjct: 110 RLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWR 169
Query: 1386 TTSAVCALFP-CASFIFAYFTPESPPWLASKGFTVQA 1421
V + P + + PES + + G Q
Sbjct: 170 HIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR 206
Score = 35.3 bits (82), Expect = 0.28
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 529 LMDLYGRRFTNLILCVPFVLGWVIMSMAT-EVW---LICVGRFLTGLSVGLSSPPSIVYI 584
L D GR+ LI+ V + G + S+AT + W + V R LTG+ +G + P I
Sbjct: 73 LADRIGRKRI-LIVSV-ALFG--LFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALT 128
Query: 585 AESTEPRYRG 594
+E+ PR RG
Sbjct: 129 SEAVGPRLRG 138
Score = 32.2 bits (74), Expect = 2.7
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 1 MSMAT-EVW---LICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRG 42
S+AT + W + V R LTG+ +G + P I +E+ PR RG
Sbjct: 93 FSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRG 138
Score = 31.5 bits (72), Expect = 4.5
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 374 ATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVS 418
A L V R LTG+ +G P I +E P+ RG AVS
Sbjct: 100 AWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRG--TAVS 142
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 405
Score = 36.4 bits (84), Expect = 0.13
Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 6/150 (4%)
Query: 1268 TPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVIL 1327
T D + S A + + ++ + YGRRL + + F G + A +
Sbjct: 45 TTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMF 104
Query: 1328 AGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIG----IFTAHLLGTF-- 1381
R + G +G + Y+ E+ R S LL + A+G L+
Sbjct: 105 IARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164
Query: 1382 LHWKTTSAVCALFPCASFIFAYFTPESPPW 1411
W+ + L + PE+ W
Sbjct: 165 DGWRALFFISILPIIFALWLRKNIPEAEDW 194
Score = 32.5 bits (74), Expect = 1.8
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 1254 LLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMG 1313
LLP A + ++P I +++ + + FL + GRR + + G
Sbjct: 260 LLPTYLKA--DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSL---LAG 314
Query: 1314 WVII----SLATEVWVILAGRFLTGF 1335
++I ++ V V+ G F
Sbjct: 315 QLLIIPVFAIGANVAVLGLGLFFQQM 340
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 36.4 bits (85), Expect = 0.13
Identities = 15/83 (18%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 1273 TWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLA--TEVWVILAGR 1330
+ + + ++ + L +L + +G++ T L+ + +G V++ +W+ L
Sbjct: 260 SVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLV 319
Query: 1331 FLTGFALGLSSPVALVYIAETTE 1353
L G LGL++ + +A+ +
Sbjct: 320 VLAGIGLGLATLLPWAMLADVVD 342
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 36.1 bits (84), Expect = 0.16
Identities = 74/372 (19%), Positives = 138/372 (37%), Gaps = 62/372 (16%)
Query: 1269 PEDGTWIASMASLPT----FIACILGSFLM----EMYGRR----LTNLVLCIPFIMGWVI 1316
P +A +A+ T F+A LG+ + + GR+ +T L++ I ++ ++
Sbjct: 26 PSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL 85
Query: 1317 ISLAT-EVW---VILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGI 1372
S AT +W ++L R + GF+LG A +Y+AE P RG + +G+
Sbjct: 86 PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGL 145
Query: 1373 FTAHLLGTFLHWKTTSAVCALFPCA---SFIFAYFTPESPPWLASKGFTVQAQQAFYWLR 1429
A L L + AL F+ + L G +LR
Sbjct: 146 LLAALTVLLLSYLLGDD--ALLEWGWRIPFLVSAV-------LVLIGL---------YLR 187
Query: 1430 GHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQ 1489
+ E+ F+ ++ +E +T K +L + +A F+ +
Sbjct: 188 RNLEETP-VFEKAQEKHKKKRGPIAETLTKH-----RKPFLLGLGLV--IATTTTFYLIT 239
Query: 1490 QFSGLNTLIFYTVGISKEVSPDVNEYTATIVIDIVRVVMAFVT--CGLLR-IFGRRPLAL 1546
+ T + T+G+S A +V+ + ++ G L GRRP +
Sbjct: 240 TYLP--TYLTQTLGLSANS--------ALLVLMLSLILFFITIPLSGALSDRIGRRP--V 287
Query: 1547 LSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQAT 1606
L +LL V +L + + L++ + + + + ELFP
Sbjct: 288 LIIFTVLAALLAV-PLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMG-SFLPELFPTEV 345
Query: 1607 RELGSGISTCFA 1618
R G+ ++ A
Sbjct: 346 RYTGASLAYNLA 357
Score = 33.0 bits (76), Expect = 1.4
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 531 DLYGRR----FTNLILCVPFVLGWVIMSMAT-EVW---LICVGRFLTGLSVGLSSPPSIV 582
D GR+ T L++ + +L ++ S AT +W L+ + R + G S+G + +
Sbjct: 60 DRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAAL 119
Query: 583 YIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFLHW 620
Y+AE P RG + + G+ ++ L L +
Sbjct: 120 YLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY 157
Score = 31.9 bits (73), Expect = 3.3
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 9 LICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFLHW 68
L+ + R + G S+G + +Y+AE P RG + + G+ ++ L L +
Sbjct: 98 LLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY 157
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 35.9 bits (83), Expect = 0.22
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Query: 518 GSWIACVLSCILMDLYGRRFTNLI-LCVPFVLGWVIMSMATE-VWLICVGRFLTGLSVGL 575
G I + L Y +++ I + + V+ VI A + L+ R + GL+ G
Sbjct: 88 GQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGS 147
Query: 576 SSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFLHW 620
SP + I + P+ R +L + + G FI + +L
Sbjct: 148 VSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCE 192
Score = 32.8 bits (75), Expect = 1.6
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 9 LICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFISHLLGTFLHW 68
L+ R + GL+ G SP + I + P+ R +L + + G FI + +L
Sbjct: 133 LVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCE 192
Score = 30.9 bits (70), Expect = 6.5
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 1306 LCIPFIMGWVIISLATE--VWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSAL 1363
+ + ++ VI A V+ R + G A G SP I + PK R L +
Sbjct: 113 MFLSSVISIVIPWAAGGGIALVV-FCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM 171
Query: 1364 LCTAVAIGIFTAHLLGTFLHW 1384
+ +G F + +L
Sbjct: 172 STSGFQLGTFIFLPISGWLCE 192
>gnl|CDD|225743 COG3202, COG3202, ATP/ADP translocase [Energy production and
conversion].
Length = 509
Score = 35.8 bits (83), Expect = 0.22
Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 24/164 (14%)
Query: 1447 ERSTITKSENMTDKKKKLEWKKN----------ILCTEFLKPLAIILVFFFVQQFSGLNT 1496
R+ +T KKK + KK IL +++L +A++++ + G++
Sbjct: 245 NRNVLTDPLFYLRAKKKKKKKKLKLGLIESFKMILRSKYLGAIALLVLAY------GVSI 298
Query: 1497 LIFYTV--GISKEVSPDVNEYTA-----TIVIDIVR-VVMAFVTCGLLRIFGRRPLALLS 1548
+ V KE+ P NEYTA I +V VV F L+R G AL++
Sbjct: 299 NLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALIT 358
Query: 1549 CLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQ 1592
L ++ + F + F ++ ++ V IG Q
Sbjct: 359 PLVMLITGVLFFGFAFFNNSIGSIFGGILGSPPLVLAVYIGGIQ 402
>gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional.
Length = 434
Score = 35.7 bits (83), Expect = 0.24
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 1286 ACILGSFLMEMYGRRLTNLV---------LCIPFIMGWVIISLATEVWVILAGRFLTGFA 1336
A +LG+++ + GRR +V L I F+ G+ I LA + V L GR L GF+
Sbjct: 73 AIVLGAYIDRV-GRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLV-LLGRLLQGFS 130
Query: 1337 LGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFLHW 1384
G+ VY+AE P +G ++ + + + A LLG L+
Sbjct: 131 AGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQ 178
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 34.9 bits (81), Expect = 0.38
Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 14/143 (9%)
Query: 876 WKKNILSPEFLKPFVILLVFFFVQQFSGASTQFSGASTVSFYSVAILQNVSADVNEYTAT 935
K + L +P ++LL+ + G+ V +Y +L +
Sbjct: 225 LKDSFLLIFKNRPLLLLLLMNL---LLFIAFNIRGSIMV-YYVTYVLGDPELFAYLLLLA 280
Query: 936 MAIDILRVIMSAVTCGLLRITGRRPIAILSSLGTAFSLLGLALMLKYPQEELPSFIPVIL 995
+L I + L++ G++ + ++ L A L L + +I+
Sbjct: 281 SGAGLL--IGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT-------PAGSVVLIV 331
Query: 996 LMSYIVFVSFGLQ-PLPWIMAGE 1017
+ I V G+ PLPW M +
Sbjct: 332 VALIIAGVGTGIANPLPWAMVAD 354
Score = 31.5 bits (72), Expect = 4.5
Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 24/163 (14%)
Query: 1447 ERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLN----TLIFYTV 1502
ER T+ K K K + L +PL ++L+ + F N +++Y
Sbjct: 209 ERVVETQPTKTGVKLK---LKDSFLLIFKNRPLLLLLLMNLL-LFIAFNIRGSIMVYYVT 264
Query: 1503 -GISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVAS 1561
+ P++ Y + ++ + L++ FG++ L L+ L + L +
Sbjct: 265 YVLGD---PELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLL-- 319
Query: 1562 ILKFMQGLLPSFMPVILLMFYMVFVSIGLQ---QLPWMMIGEL 1601
V+L++ ++ +G LPW M+ +
Sbjct: 320 -------YFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADT 355
>gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM;
Provisional.
Length = 413
Score = 34.8 bits (80), Expect = 0.39
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Query: 529 LMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAEST 588
L D GRR + + F L T + + RF+ G S+ + V + E+
Sbjct: 74 LSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAF 133
Query: 589 EP----RYRGAILAIVSLAISSGIFISHLLGTFLHWKTASAVCALFPFIS-CIFVYSTPE 643
+ I +IV +A G L F+HWK A+ A+ I+ + + PE
Sbjct: 134 GQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPE 193
Query: 644 S 644
+
Sbjct: 194 T 194
Score = 30.6 bits (69), Expect = 8.7
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 12 VGRFLTGLSVGLSSPPSIVYIAESTEP----RYRGAILAIVSLAISSGIFISHLLGTFLH 67
+ RF+ G S+ + V + E+ + I +IV +A G L F+H
Sbjct: 109 IARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH 168
Query: 68 WKTASAVCALFPFIS-CIFVYSTPES 92
WK A+ A+ I+ + + PE+
Sbjct: 169 WKVLFAIIAVMGLIAFVGLLLAMPET 194
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 399
Score = 34.6 bits (80), Expect = 0.51
Identities = 68/409 (16%), Positives = 130/409 (31%), Gaps = 65/409 (15%)
Query: 1274 WIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISL----ATEVWVILAG 1329
++ S S + G +L++ +G R T L + FI+ W + + A +
Sbjct: 33 YVFSAFSWGYVVGQFPGGWLLDRFGARKT---LAV-FIVIWGVFTGLQAFAGAYVSLYIL 88
Query: 1330 RFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIG-IFTAHLLGTFLH---WK 1385
R L G A P ++ +A R ++ +A +G I L+G L W+
Sbjct: 89 RVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQ 148
Query: 1386 T----TSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKS 1441
+ ++ F P+ WL E K
Sbjct: 149 WAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTE-----------------------EEKY 185
Query: 1442 MLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNT--LIF 1499
++ + T KK ++ E LK + + + L +
Sbjct: 186 IVVGGLLAEQQGKGPSTPKKYQI--------KELLKDRRVWGLALGQFLVNIGLGFFLTW 237
Query: 1500 YTVGISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRI----FGRRPLALLSCLGTCLS 1555
+ + +E + E + + ++ F+ L RR +L+ T +
Sbjct: 238 FPTYLVQERGLSILE---AGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAII 294
Query: 1556 LLGVASILKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGIST 1615
V S+L F + + L+ + F +G + W +I + P L G+
Sbjct: 295 AGLVLSLLMFATNYVNIPYAALALV-ALGFFGLGAGAIGWALISDNAPGNIAGLTGGLIN 353
Query: 1616 CFAFLTLFVVVKTGPLLFLSIGTPE-TFG---LYGCITAFGFVFLYIFL 1660
L V GP++ +I +F + A Y+ L
Sbjct: 354 SLGNLGGIV----GPIVIGAIAATTGSFAGALMVVAALALIGALSYLLL 398
Score = 33.8 bits (78), Expect = 0.86
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 1 MSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAIS-SGIFIS 59
+ A + + R L G + P I+ +A R ++I + A GI
Sbjct: 76 QAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGG 135
Query: 60 HLLGTFLH---WKTA----SAVCALFPFISCIFVYSTPESPSWLA 97
L+G L W+ A + ++ + F+ P+ WL
Sbjct: 136 PLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLT 180
Score = 33.8 bits (78), Expect = 0.86
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 553 MSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAIS-SGIFIS 611
+ A + + R L G + P I+ +A R ++I + A GI
Sbjct: 76 QAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGG 135
Query: 612 HLLGTFLH---WKTA----SAVCALFPFISCIFVYSTPESPSWLA 649
L+G L W+ A + ++ + F+ P+ WL
Sbjct: 136 PLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLT 180
>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter
Family (TC 2.A.2) GPH:cation symporters catalyze uptake
of sugars in symport with a monovalent cation (H+ or
Na+). Members of this family includes transporters for
melibiose, lactose, raffinose, glucuronides, pentosides
and isoprimeverose. Mutants of two groups of these
symporters (the melibiose permeases of enteric bacteria,
and the lactose permease of Streptococcus thermophilus)
have been isolated in which altered cation specificity is
observed or in which sugar transport is uncoupled from
cation symport (i.e., uniport is catalyzed). The various
members of the family can use Na+, H+ or Li, Na+ or Li+,
H+ or Li+, or only H+ as the symported cation. All of
these proteins possess twelve putative transmembrane
a-helical spanners [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 437
Score = 33.8 bits (78), Expect = 0.81
Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1268 TPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLA-TEVWVI 1326
PE +++ S+A I +L L++ +GR++ + ++G++I A + + +I
Sbjct: 255 DPELFSYMGSIAIGAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLI 314
Query: 1327 LAGRFLTGFALGLSSPVALVYIAETTE 1353
L L GF + + +A+T +
Sbjct: 315 LVLIILAGFGQNFVTGLVWALVADTVD 341
>gnl|CDD|180917 PRK07279, dnaE, DNA polymerase III DnaE; Reviewed.
Length = 1034
Score = 33.9 bits (78), Expect = 1.0
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 20/104 (19%)
Query: 804 EKAFHWLRGHSDEFDNELKSILDYANSAEKAFHWLRGHSDEFDNELKSIMD-YAQNITIT 862
E F++L+G E D L+ +L A W+ + E D E+ I+ + +I +
Sbjct: 938 EGKFYYLKGKIQERDGRLQMVLQQIQEASSERFWILLENHEHDQEISEILGAFPGSIPVI 997
Query: 863 NSEDMNYKEKICEWKKNILSPEF-----------LKPFVILLVF 895
++Y+E+ K+ I S L FV+ V+
Sbjct: 998 ----IHYQEE----KETIQSTHIFVAKSEELEEKLSEFVLKTVY 1033
>gnl|CDD|182006 PRK09633, ligD, ATP-dependent DNA ligase; Reviewed.
Length = 610
Score = 33.5 bits (77), Expect = 1.2
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 131 QKITITKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQFSGVN---TVAFYSVG 187
+ + E +V KKK +W +N S ++LK V V + N T + Y G
Sbjct: 175 EAVKRYDGEGIVAKKKTSKWLENKRSKDWLKIKNWRYVHVIVTGYDPSNGYFTGSVYKDG 234
Query: 188 ILKNV 192
L V
Sbjct: 235 QLTEV 239
Score = 33.5 bits (77), Expect = 1.2
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 683 QKITITKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQFSGVN---TVAFYSVG 739
+ + E +V KKK +W +N S ++LK V V + N T + Y G
Sbjct: 175 EAVKRYDGEGIVAKKKTSKWLENKRSKDWLKIKNWRYVHVIVTGYDPSNGYFTGSVYKDG 234
Query: 740 ILKNV 744
L V
Sbjct: 235 QLTEV 239
>gnl|CDD|182234 PRK10091, PRK10091, MFS transport protein AraJ; Provisional.
Length = 382
Score = 32.8 bits (75), Expect = 1.5
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 22/137 (16%)
Query: 1304 LVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSAL 1363
L L ++G + +L++ ++ GR ++GF G V + + +
Sbjct: 72 LFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAI-VLSKIIKPGKVTA--- 127
Query: 1364 LCTAVAI---GIFTAHL----LGTFL----HWKTTSAVCALFPCASFIFAYFTPESPPWL 1412
AVA G+ A+L LGT+L W+ T + A+F A YF
Sbjct: 128 ---AVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDE 184
Query: 1413 ASKGFTVQAQQAFYWLR 1429
A G Q F++LR
Sbjct: 185 AKGGLREQ----FHFLR 197
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 33.0 bits (75), Expect = 1.7
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 6/154 (3%)
Query: 1267 ITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVI 1326
+T +G ++A+ A + L L + +GR+ + + + +G + LA+ V ++
Sbjct: 50 LTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIML 109
Query: 1327 LAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIG-IFTAHLLGTFLH-- 1383
RF+ G + A Y E+ + SA L + IG I A+ + +F
Sbjct: 110 TLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY 169
Query: 1384 -WKTTSAVCALFPCASFIFAYFT-PESPPWLASK 1415
W+ V L P I+ PES W +K
Sbjct: 170 GWRAAFFV-GLLPVLLVIYIRARAPESKEWEEAK 202
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 31.8 bits (73), Expect = 3.6
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 551 VIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGIFI 610
++ A + + V FL G S GL P I + G +LA + + G+ +
Sbjct: 314 FLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLL 373
Query: 611 SHLLGTF---LHWKTASA--VCALFPFISCIFV 638
L T L A + AL I ++
Sbjct: 374 FLALTTLFSGLGLSPAGLFYLIALVTLIGTLYT 406
>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of such
oxidases are found in Mesorhizobium loti and three in
Agrobacterium tumefaciens, a high enough copy number to
suggest that not all members are share the same function.
The model is designated as subfamily rather than
equivalog for this reason.Sarcosine oxidase catalyzes the
oxidative demethylation of sarcosine to glycine. The
reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 985
Score = 32.0 bits (73), Expect = 4.0
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 1225 YVRCDKLIAAGGP--LTATLAAGSAGAYSAVLLPQLESANSTIPITPE--DG----TWIA 1276
CD L+ GP L A LAA AGA +L+ + A ++ E DG W A
Sbjct: 161 NAHCDVLVVGAGPAGLAAALAAARAGA-RVILVDEQPEAGGSLLSEAETIDGKPAADWAA 219
Query: 1277 S 1277
+
Sbjct: 220 A 220
>gnl|CDD|182309 PRK10213, nepI, ribonucleoside transporter; Reviewed.
Length = 394
Score = 31.4 bits (71), Expect = 4.1
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 535 RRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVG----LSSPPSIVYIAESTEP 590
RR+ ++ V L +++S A L+ +GR GL++G +S+ ++ + T P
Sbjct: 84 RRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVP 143
Query: 591 RYRGAILAIVSLAISSGIFISHLLGTFLHWKTASAVCALFPFISCIFVY----STPESPS 646
+ I VS+A+ + LG + W+ A+ + ++ S P PS
Sbjct: 144 KALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPS 203
>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter. This model
represents a subgroup of the more broadly defined model
TIGR00890, which in turn belongs to the Major
Facilitator transporter family. Seed members for this
family include the known oxalate/formate antiporter of
Oxalobacter formigenes, as well as transporter subunits
co-clustered with the two genes of a system that
decarboxylates oxalate into formate. In many of these
cassettes, two subunits are found rather than one,
suggesting the antiporter is sometimes homodimeric,
sometimes heterodimeric.
Length = 405
Score = 31.3 bits (71), Expect = 4.5
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 529 LMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVG 574
+D YG R + + LGWV+ + A + + + G+ G
Sbjct: 61 FVDKYGPRIVVMFGGIMCGLGWVLNAYADSLPALYAAAVVAGIGAG 106
>gnl|CDD|234272 TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1
family, C-terminal domain. This model describes
full-length from some species, and the C-terminal region
only from other species, of the YidC/Oxa1 family of
proteins. This domain appears to be univeral among
bacteria (although absent from Archaea). The
well-characterized YidC protein from Escherichia coli and
its close homologs contain a large N-terminal periplasmic
domain in addition to the region modeled here [Protein
fate, Protein and peptide secretion and trafficking].
Length = 181
Score = 30.1 bits (69), Expect = 5.7
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 1566 MQGLLPSF--MPVILLMFYMVFVSIGLQQLPWMMIGEL 1601
+ G LP MP+ + ++ ++ SI L+ P++ I +L
Sbjct: 68 LGGCLPLLIQMPIFIALYQVLRRSIELRHAPFLWIQDL 105
>gnl|CDD|223838 COG0767, Ttg2B, ABC-type transport system involved in resistance to
organic solvents, permease component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 267
Score = 30.6 bits (70), Expect = 7.1
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 219 LLRITGRRPLALLSSLGTAFSLLGLALILKFPQEQLPSFIPVILLMSYIVFVSVGLVPLP 278
LLR G+ L L SLG AF LG AL F + ++ + ++ S+ +V L
Sbjct: 11 LLRRLGKALLKTLRSLGRAFLFLGNALRGLF--REPFRPRELVRQLYFVGVGSLPIVALT 68
Query: 279 WIMTGELLAAMGPIM-GDFSSGTAVGFSAVLL 309
+ G +LA G DF + GF L
Sbjct: 69 SLFVGAVLALQGYTQLRDFGAEDFSGFLVALS 100
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents the
phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 30.9 bits (70), Expect = 7.5
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 1599 GELFPQATRELGSGISTC----------FAFLTLFVVVKTGPLLFLSIGTPETFGLYGCI 1648
GE+FP R GIS F FL L I ++
Sbjct: 418 GEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALF 477
Query: 1649 TAFGFVFLYIFLPETKNKTLQQI 1671
G +F + +PETK K+L+++
Sbjct: 478 MFLGILFT-LLIPETKGKSLEEL 499
>gnl|CDD|240601 cd12918, VKOR_arc, Vitamin K epoxide reductase family in archaea
and some bacteria. This family includes vitamin K
epoxide reductase (VKOR) mostly present in archaea and
some bacteria. VKOR (also named VKORC1) is an integral
membrane protein that catalyzes the reduction of
vitamin K 2,3-epoxide and vitamin K to vitamin K
hydroquinone, an essential co-factor subsequently used
in the gamma-carboxylation of glutamic acid residues in
blood coagulation enzymes. All homologs of VKOR contain
an active site CXXC motif, which is switched between
reduced and disulfide-bonded states during the reaction
cycle. In some bacterial homologs, the VKOR domain is
fused with domains of the thioredoxin family of
oxidoreductases which may function as redox partners in
initiating the reduction cascade.
Length = 126
Score = 29.2 bits (66), Expect = 8.8
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 40 YRGAILAIVSLAISSGIFISHLLGTFLHWKTASAVCALFPFISCIFVYSTPES 92
G L++V L S+ + H L C + I+C V S+P S
Sbjct: 1 LLGLALSLVGLLASAYLTYEHYLKRP------PLACTISGVINCEKVLSSPYS 47
Score = 29.2 bits (66), Expect = 8.8
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 592 YRGAILAIVSLAISSGIFISHLLGTFLHWKTASAVCALFPFISCIFVYSTPES 644
G L++V L S+ + H L C + I+C V S+P S
Sbjct: 1 LLGLALSLVGLLASAYLTYEHYLKRP------PLACTISGVINCEKVLSSPYS 47
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.139 0.423
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 87,659,437
Number of extensions: 9018692
Number of successful extensions: 14704
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14505
Number of HSP's successfully gapped: 461
Length of query: 1693
Length of database: 10,937,602
Length adjustment: 110
Effective length of query: 1583
Effective length of database: 6,058,662
Effective search space: 9590861946
Effective search space used: 9590861946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 66 (29.2 bits)