RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10222
(1693 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.2 bits (166), Expect = 2e-11
Identities = 75/501 (14%), Positives = 139/501 (27%), Gaps = 197/501 (39%)
Query: 1317 ISLATEVWVI---LAGRFL-------TGFALG--LSSPVALV-----YIAETTEPKYRGV 1359
+ + T + I L +F GFA ++P LV Y++ EP G
Sbjct: 20 LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 1360 LSALLCTAVAIGIF-TAHLLGTFLHWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFT 1418
+L + + F +L G +H + A E+ L
Sbjct: 80 FDQVL--NLCLTEFENCYLEGNDIH--------------ALA-AKLLQENDTTLVKTKEL 122
Query: 1419 VQAQQAFYWLRGHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEF--- 1475
++ + R + S + ++ + +L F
Sbjct: 123 IKN---YITARIMAKRP-------FDKKSNSALFRAVG--EGNAQL-------VAIFGGQ 163
Query: 1476 ------LKPLAII------LVFFFVQQFSG-LNTLI--------FYTVGI-------SKE 1507
+ L + LV ++ + L+ LI +T G+ +
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 1508 VSPDVNEYTATI-----VIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASI 1562
+PD +Y +I +I ++++ VT ++ G P L S L G +
Sbjct: 224 NTPDK-DYLLSIPISCPLIGVIQLAHYVVTA---KLLGFTPGELRSYLK---GATGHS-- 274
Query: 1563 LKFMQGLL-----------PSFMP----VILLMFYMVFVSIGL---QQLPWMMIGELFPQ 1604
QGL+ SF I ++F+ IG+ + P + +
Sbjct: 275 ----QGLVTAVAIAETDSWESFFVSVRKAITVLFF-----IGVRCYEAYPNTSLPPSILE 325
Query: 1605 ATRELGSGISTC-FA--------------------------FLTL------FVVVKTGPL 1631
+ E G+ + + ++L VV +GP
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV--SGP- 382
Query: 1632 LFLSIGTPETFGLYGCITA-----------------------FGFVFLYIFLP---ETKN 1665
P++ LYG F FL + P
Sbjct: 383 -------PQS--LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 1666 KTLQQIEDDFKSKTMEVGTED 1686
I D + +D
Sbjct: 434 PASDLINKDLVKNNVSFNAKD 454
Score = 67.0 bits (163), Expect = 6e-11
Identities = 105/614 (17%), Positives = 183/614 (29%), Gaps = 199/614 (32%)
Query: 1058 RPIAILS--TLGTAF----SLLGLALMLK-------------YPQEELPSFIPVILLMSY 1098
RP+ LS +L + +A L+ + ++ P+ P L+ +
Sbjct: 7 RPL-TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT-TPAELVGKF 64
Query: 1099 IVFVSFGVQPLPWIMAGEV-----RYFTTYYI----IHN---HLFPQVTREIGS--GITT 1144
+ +VS V+P +V F Y+ IH L + + +
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 1145 CFGFLALFCAVK-----TEPLLFRSIGTPGTFGLY----GKSKTAIRQNPRWNGRDCLPE 1195
+ A A + + LFR++G G L G Q N D E
Sbjct: 125 NY-ITARIMAKRPFDKKSNSALFRAVGE-GNAQLVAIFGG-------QG---NTDDYFEE 172
Query: 1196 VVHSLSRNVNVGTCVKRYYESKYCEQQSSYVRCDKLIAAGGPLTATLAAGSAGA---YSA 1252
L R++ Y++ Y V LI + L + A ++
Sbjct: 173 ----L-RDL---------YQT-Y----HVLVG--DLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 1253 VL-LPQ-LESANSTIPITPEDGTWIASMA-SLPT---------FIACILGSFLMEMYGRR 1300
L + + LE+ ++T P D ++ S+ S P + L F
Sbjct: 212 GLNILEWLENPSNT-P----DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 1301 LTNLVLCIPFIMGWVIISLATEVW------VILAGRFLTGFALGLSS----------PVA 1344
L ++ V I+ W V A L F +G+ P
Sbjct: 267 LKGATGHSQGLVTAVAIAETDS-WESFFVSVRKAITVL--FFIGVRCYEAYPNTSLPPSI 323
Query: 1345 LVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFLHWKTTSAVCALFPCASFIFAYF 1404
L E E GV S +L ++ + + + + P +
Sbjct: 324 LEDSLENNE----GVPSPML--SI-SNLTQEQVQ------DYVNKTNSHLPAGKQVEISL 370
Query: 1405 --TPES-----PPWLAS-KGFTVQAQQAFYWLRGHTAESEFEFKSMLNHAERS------- 1449
++ PP S G + LR A S + +S + +ER
Sbjct: 371 VNGAKNLVVSGPP--QSLYGLNLT-------LRKAKAPSGLD-QSRIPFSERKLKFSNRF 420
Query: 1450 -TITK---SENMTDKKKKLE---WKKNILCTEFLKPLAIILVFFF-----VQQFSG-LNT 1496
+ S + + K N+ K + I V+ ++ SG ++
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNA--KDIQIP-VYDTFDGSDLRVLSGSISE 477
Query: 1497 LIFYTVGISKEVS-PDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCL----- 1550
I + I V ++ AT ++D FG + L L
Sbjct: 478 RIVDCI-IRLPVKWETTTQFKATHILD----------------FGPGGASGLGVLTHRNK 520
Query: 1551 -GTCLSLLGVASIL 1563
GT GV I+
Sbjct: 521 DGT-----GVRVIV 529
Score = 61.6 bits (149), Expect = 3e-09
Identities = 103/620 (16%), Positives = 165/620 (26%), Gaps = 226/620 (36%)
Query: 24 SSPPSIV-----YIAESTEPRYRGAILAIVSLAISSGIFISHLL-GTFLHWKTASAVCAL 77
++P +V Y++ EP G +++L ++ F + L G +H + L
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE--FENCYLEGNDIH----ALAAKL 108
Query: 78 FPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHSAESESELKSMLNHAQKITITK 137
+ ++ + K Y + A R +S S L +
Sbjct: 109 LQENDT----TLVKTKELI--KNY-ITARIMAK--RPFDKKSNSAL---FRAVGE----- 151
Query: 138 TENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQFSGVNTVAF------YSVGILKN 191
+ I F Q G F Y
Sbjct: 152 --------------------GNAQLVAI-----FGGQ--GNTDDYFEELRDLYQTY---- 180
Query: 192 VSPDVNEYVATMAIDIVRVIMSAVTC------GL-----LRITGRRP--LALLSSLGTAF 238
V + + A + +I + + GL L P LLS
Sbjct: 181 -HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI---PI 236
Query: 239 SLLGLALILKFPQEQLPSFIPVILLMSYIVFVSV-GLVPLPWIMTGELLAAMGPIMGDFS 297
S P I VI L Y+V + G P GEL +
Sbjct: 237 S---------CP------LIGVIQLAHYVVTAKLLGFTP------GELRSY-------LK 268
Query: 298 SGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCGRRF-S 356
T L AVA IA F
Sbjct: 269 GATGHS-----------------------------QGLVTAVA-----IAETDSWESFFV 294
Query: 357 NLILCIPFVLGWIIISSATKVWLLCVG-RFLTGLSIGFLTPPAIVYIAETSE--PKYRGA 413
++ I VL +I G R L P + E +E P
Sbjct: 295 SVRKAIT-VLFFI-------------GVRCYEAYPNTSLPPSILEDSLENNEGVPSP--- 337
Query: 414 FLAVSSLAISSGILVSHLL---DHLPTVRHLGLVMALV-GPL------PQRSYLHLGNRL 463
L++S+L + ++ HLP + + + +LV G P +S L L
Sbjct: 338 MLSISNLTQEQ--VQDYVNKTNSHLPAGKQVEI--SLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 464 ----------------------FSFSYLTGYCLF--QLLAAAGPIFATLGSGMTSGFSAV 499
FS +L F LL A + F+A
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA- 452
Query: 500 LLPQLESANSTIPI--TPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMAT 557
+ IP+ T DGS + + I + + I+ +P + W +
Sbjct: 453 --KDI-----QIPVYDT-FDGSDLRVLSGSISERI-----VDCIIRLP--VKWETTTQFK 497
Query: 558 EVWLICVGRFLTGLSVGLSS 577
++ G G + GL
Sbjct: 498 ATHILDFGP---GGASGLGV 514
Score = 61.2 bits (148), Expect = 3e-09
Identities = 101/621 (16%), Positives = 168/621 (27%), Gaps = 236/621 (38%)
Query: 506 SANSTIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVG 565
A ST P+T GS + VL VP ++ A+++
Sbjct: 2 DAYSTRPLTLSHGS-LEHVLL-----------------VPTASFFI----ASQLQ----E 35
Query: 566 RFLTGL---SVGL------SSPPSIV-----YIAESTEPRYRGAILAIVSLAISSGIFIS 611
+F L + G ++P +V Y++ EP G +++L ++ F +
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE--FEN 93
Query: 612 HLL-GTFLHWKTASAVCALFPFISCIFVYSTPESPSWLASKGYSVEAEQAFHWLRGHSAE 670
L G +H + L + ++ + K Y + A R +
Sbjct: 94 CYLEGNDIH----ALAAKLLQENDT----TLVKTKELI--KNY-ITARIMAK--RPFDKK 140
Query: 671 SESELKSMLNHAQKITITKTENMVDKKKKREWKKNILSPEFLKPFVILLVFFFVQQFSGV 730
S S L + + I F Q G
Sbjct: 141 SNSAL---FRAVGE-------------------------GNAQLVAI-----FGGQ--GN 165
Query: 731 NTVAF------YSVGILKNVSPDVNEYVATMAIDIVRVIISHMTASALCALFPLTSIIFV 784
F Y V + + A L L
Sbjct: 166 TDDYFEELRDLYQTY-----HVLVGDLIKFSA----------------ETLSELIR---- 200
Query: 785 YFTPESPSWLASKGYTVQAEKAFHWLRGHSDEFDNELKSILDYANSAEKAF--------- 835
T + ++G + WL S+ D DY S +
Sbjct: 201 --TTLDAEKVFTQGLNILE-----WLENPSNTPDK------DYLLSIPISCPLIGVIQLA 247
Query: 836 HWLR-----G-HSDEFDNELKSIMDYAQNI---TITNSEDMNYKEKICEWKKNILSPEFL 886
H++ G E + LK ++Q + D W F
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD--------SW------ESFF 293
Query: 887 KPFVILLVFFFVQQFSGASTQFSGASTVSFYSVAILQNVSADVNEYTATMAIDILRVIMS 946
+ F F G A + +IL++ S + NE + M
Sbjct: 294 VSVRKAITVLF---FIGVRCY--EAYPNTSLPPSILED-SLENNEGVPSP--------ML 339
Query: 947 AVTCGLLR------IT-------GRRPIAILSSL----------GTAFSLLGLALML--- 980
+++ L + + + + I SL G SL GL L L
Sbjct: 340 SIS-NLTQEQVQDYVNKTNSHLPAGKQVEI--SLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 981 KYPQEELPSFIPVILLMSYIVF----VSFGLQPLPWIMAGEHTELFFLHPSV--IVK--- 1031
K P S IP F + F + LP + + H+ L L P+ I K
Sbjct: 397 KAPSGLDQSRIP---------FSERKLKFSNRFLP-VASPFHSHL--LVPASDLINKDLV 444
Query: 1032 ----IFQVKYLGPLTIMSTVT 1048
F K + + + T
Sbjct: 445 KNNVSFNAKDIQ-IPVYDTFD 464
Score = 54.7 bits (131), Expect = 3e-07
Identities = 93/544 (17%), Positives = 156/544 (28%), Gaps = 202/544 (37%)
Query: 382 VGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAIS---SGIL--------VSH 430
VG+FL Y++ EP G F V +L ++ + L +
Sbjct: 61 VGKFLG-------------YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 431 LLDHLPTVRHLGLVMALVGPLPQRSYL---HLGNRLFSFSYLTGYCLFQLLAAAG--PIF 485
LL T L L+ ++Y+ + R F + LF+ G +
Sbjct: 108 LLQENDTT--LVKTKELI-----KNYITARIMAKR--PFDKKSNSALFR-AVGEGNAQLV 157
Query: 486 ATLGSGMTSGFSAVLLPQLESANSTIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVP 545
A G G G + +L T + D L+ + LI
Sbjct: 158 AIFG-G--QGNTDDYFEELRDLYQTYHVLVGD-----------LIKFSAETLSELIRTTL 203
Query: 546 -----FVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAES--TEPRYRGAILA 598
F G I+ WL S+ P Y+ + P ++
Sbjct: 204 DAEKVFTQGLNILE-----WL-----------ENPSNTPDKDYLLSIPISCP-----LIG 242
Query: 599 IVSLA----------ISSGIFISHLLGTFLHWKTASAVCALFPFISCIFVYSTPESPSWL 648
++ LA + G S+L G H + V A+ I+ E+ SW
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGH--SQGLVTAV--AIA--------ETDSW- 289
Query: 649 ASKGYSVEAEQAFHWL-----RGHSAESESELKS----------------MLNHAQKITI 687
+ + V +A L R + A + L ML+ +T
Sbjct: 290 --ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS-ISNLTQ 346
Query: 688 TKTENMVDK--KKKREWKK------N-----ILS--PEFLKPFVILL------------- 719
+ ++ V+K K+ N ++S P+ L + L
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 720 VFF------FVQQFSGVNTVAFYSVGILKNVSPDVNEYVATMAIDIVRVIISHMTASALC 773
+ F F +F V F+S +L S +N+ + + A +
Sbjct: 407 IPFSERKLKFSNRFLPV-ASPFHSH-LLVPASDLINKDLVKNNVSF--------NAKDI- 455
Query: 774 ALFPLTSIIFVYFTPESPSWLASKGYTVQAEKAFHWLRGHSDEFDNELKSILDYANSAEK 833
P VY T G LR S + + I+D
Sbjct: 456 -QIP------VYDT--------FDGSD---------LRVLS---GSISERIVDCI--IRL 486
Query: 834 AFHW 837
W
Sbjct: 487 PVKW 490
Score = 48.9 bits (116), Expect = 2e-05
Identities = 49/255 (19%), Positives = 74/255 (29%), Gaps = 65/255 (25%)
Query: 163 FVILLVFFFVQQFSGVNTVAFYSVG---ILKNVSPDVNEYVATMAIDIVRVIMSAVTCGL 219
F IL + V T+ F I +N S + E + I +
Sbjct: 1659 FSILDI---VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD-GKLKTEKIFKEINEHS 1714
Query: 220 LRITGRRPLALLSSLGTAFSLLGLALILKFPQEQLPSFIPVILLMSYIVFV---SVGLVP 276
T R LLS+ T F+ Q P + LM F S GL+P
Sbjct: 1715 TSYTFRSEKGLLSA--TQFT-------------Q-----PALTLMEKAAFEDLKSKGLIP 1754
Query: 277 LPWIMT----GEL--LAAMGPIMGDFSSGTAV----G-FSAVLLPQLQSANSTIPITTED 325
GE LA++ +M S V G V +P+ + S
Sbjct: 1755 ADATFAGHSLGEYAALASLADVM-SIESLVEVVFYRGMTMQVAVPRDELGRSN------- 1806
Query: 326 ASWIASMAAL-PMAVACVLGCIAMDSCGRRFS---NLILCI-----PFVLGWIIISSATK 376
M A+ P VA A+ R ++ I +++
Sbjct: 1807 ----YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE---NQQYVAAGDL 1859
Query: 377 VWLLCVGRFLTGLSI 391
L V L + +
Sbjct: 1860 RALDTVTNVLNFIKL 1874
Score = 41.2 bits (96), Expect = 0.004
Identities = 26/114 (22%), Positives = 33/114 (28%), Gaps = 30/114 (26%)
Query: 908 FSGASTVSFYSVAILQNVSADVNEYTATMAIDILRVIMSAVTCGLLRITGRRPIAILSSL 967
F G I +N SA + E I + T R +LS+
Sbjct: 1676 FGGEK-----GKRIRENYSAMIFETIVD-GKLKTEKIFKEINEHSTSYTFRSEKGLLSA- 1728
Query: 968 GTAFSLLGLALMLKYPQEELPSFIPVILLMSYIVFV---SFGLQPLPWIMAGEH 1018
T F+ Q P + LM F S GL P AG H
Sbjct: 1729 -TQFT-----------Q-------PALTLMEKAAFEDLKSKGLIPADATFAG-H 1762
Score = 40.0 bits (93), Expect = 0.010
Identities = 38/197 (19%), Positives = 58/197 (29%), Gaps = 81/197 (41%)
Query: 1077 LMLKYPQEEL--PSFI-PVILLMSYIVFV---SFGVQPLPWIMAGEVRYFTTYYIIHNH- 1129
+ + L F P + LM F S G+ P AG H
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG-------------HS 1763
Query: 1130 LFPQVTREIG--SGITTCFGFLALFCAVKTEPLLF---RSIGTPGTFGLYGKSKTAI-RQ 1183
L G + + + +++ V+ ++F ++ G+S +
Sbjct: 1764 L--------GEYAALASLADVMSIESLVE---VVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 1184 NPRWNGR-------DCLPEVVHSLSRN-------VNVGTCVKRYYESKY-CE-QQSSYVR 1227
NP GR + L VV + + VN Y E QQ YV
Sbjct: 1813 NP---GRVAASFSQEALQYVVERVGKRTGWLVEIVN------------YNVENQQ--YV- 1854
Query: 1228 CDKLIAAGGPLTATLAA 1244
AAG L A
Sbjct: 1855 -----AAG-----DLRA 1861
Score = 33.9 bits (77), Expect = 0.58
Identities = 31/192 (16%), Positives = 62/192 (32%), Gaps = 66/192 (34%)
Query: 1309 PFIMGWVIISLATEVWVILAGRFLT----GFALGLSSPVALVYIAETTEPKYRGVLSALL 1364
P + ++ A + L + L FA G S + E Y +AL
Sbjct: 1734 PALT---LMEKA--AFEDLKSKGLIPADATFA-GHS-------LGE-----Y----AALA 1771
Query: 1365 CTAVAIGIF----TAHLL---GTFLHW--------KTTSAVCALFPCASFIFAYFTPESP 1409
A + ++ G + ++ + A+ P + A F+ E+
Sbjct: 1772 SLA---DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP--GRVAASFSQEAL 1826
Query: 1410 PWLASK-----GFTVQA-------QQAFYWLRGHTAESEFEFKSMLNHAERSTI-----T 1452
++ + G+ V+ QQ Y G + ++LN + I
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVENQQ--YVAAGDLRALD-TVTNVLNFIKLQKIDIIELQ 1883
Query: 1453 KSENMTDKKKKL 1464
KS ++ + + L
Sbjct: 1884 KSLSLEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 3e-08
Identities = 92/623 (14%), Positives = 197/623 (31%), Gaps = 192/623 (30%)
Query: 671 SESELKSMLNHAQKIT---------ITKTENMVDK------KKKREWKKNILSPEFLKPF 715
S+ E+ ++ ++ ++K E MV K + ++ + + E +P
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP- 105
Query: 716 VILLVFFFVQQFSGVNTVAFYSVGILKNVSPDVNEYVATMAIDIVRVIISHMTA--SALC 773
S + + L N + +Y ++ R + AL
Sbjct: 106 ------------SMMTRMYIEQRDRLYNDNQVFAKY------NVSR--LQPYLKLRQALL 145
Query: 774 ALFPLTSIIFVYFTPES-PSWLAS---KGYTVQAEKAF--HWLR-GHSDEFDNELKSILD 826
L P + + S +W+A Y VQ + F WL + + + L+ +
Sbjct: 146 ELRP-AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-- 202
Query: 827 YANSAEKAFHWLRGHSDEFDNELKSIMDYAQNITITNSEDMNYKEKICEWKKN-----IL 881
+K + + D S D++ NI + ++ + K +L
Sbjct: 203 -----QKLLY-------QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 882 ----SPEFLKPFVI---LLVFFFVQQFSGASTQFSGASTVSFYSVAILQNVSADVNEYTA 934
+ + F + +L+ +T+F F S A ++S D + T
Sbjct: 251 LNVQNAKAWNAFNLSCKILL----------TTRF--KQVTDFLSAATTTHISLDHHSMTL 298
Query: 935 TMAIDILRVIMSAVTCGLLRITGRRPIAILSSLGTAFSLLGLALM----------LKYPQ 984
T ++ +++ + C + P +L++ S++ +
Sbjct: 299 TPD-EVKSLLLKYLDCRPQDL----PREVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNC 352
Query: 985 EELPSFIPVILLMSYIVFVSFGLQPLPWIMAGEHTELFFLHPSVIVKIFQ--VKYLGPLT 1042
++L + I+ S V L+P E+ ++F + +F
Sbjct: 353 DKLTT----IIESSLNV-----LEP------AEYRKMFDR-----LSVFPPSAH------ 386
Query: 1043 IMSTVTCGL-LRITGRRPIAILSTL-----------GTAFSLLGLALMLKYPQEELPSFI 1090
I + + + + + +++ L + S+ + L LK E + +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA-L 445
Query: 1091 PVILLMSYIVFVSF---GVQPLPWIMAGEVRYFTTY-YIIHNHLFP-QVTREIGSGITTC 1145
++ Y + +F + P YF Y +I H HL + +
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQ-----YF--YSHIGH-HLKNIEHPERMTL----- 492
Query: 1146 FGFLALFCAVKTEPLLFRSIGTPGTFGLYGKSKTAIRQN-PRWNGRDCLPEVVHSLSRNV 1204
F +F L FR + + K IR + WN + + L
Sbjct: 493 --FRMVF-------LDFRFL----------EQK--IRHDSTAWNASGSILNTLQQL---- 527
Query: 1205 NVGTCVKRYYESKYCEQQSSYVR 1227
++Y+ C+ Y R
Sbjct: 528 -------KFYKPYICDNDPKYER 543
Score = 48.3 bits (114), Expect = 2e-05
Identities = 42/304 (13%), Positives = 78/304 (25%), Gaps = 81/304 (26%)
Query: 94 SWLAS---KGYSVEAEQAF--HWLR-GHSAESESELKSMLN---HAQKITITKTENMVDK 144
+W+A Y V+ + F WL + E+ L+ + +++++ +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 145 KKKREWKKNILSPEFL--KPFVILLVFFFVQQFSGVNTVAFYSVGILKNV-SPDVNEY-- 199
K + + L L KP+ L+ +L NV +
Sbjct: 224 KLRIHSIQAELR-RLLKSKPYENCLL-------------------VLLNVQNAKAWNAFN 263
Query: 200 ------VATMAIDIVRVIMSAVTCGLLRITGRRPLALLSSLGTAFSLLGLALILKFPQEQ 253
+ T + + +A T + L L L +
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL------LLKYLDCRPQD 317
Query: 254 LPSFIPVILLMSYIVFVSVGLVPLPWIMTGELLAAMGPIMGDFSS-------GTAVGFS- 305
LP +L + P + E + D T + S
Sbjct: 318 LP---REVLTTN----------PRRLSIIAESIRDG-LATWDNWKHVNCDKLTTIIESSL 363
Query: 306 AVLLPQLQSA----------NSTIPITTEDASWIASMAALPMAVACVL---GCIAMDSCG 352
VL P ++ IP W + + M V L +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 353 RRFS 356
S
Sbjct: 424 STIS 427
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport,
sugar transport, transmembrane, formylation; 2.95A
{Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A
2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 39.1 bits (91), Expect = 0.010
Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 5/123 (4%)
Query: 1288 ILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVY 1347
++ G + L+ + + S AT ++ + L F + Y
Sbjct: 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336
Query: 1348 IAETTEPKYRGVLSALLCT-----AVAIGIFTAHLLGTFLHWKTTSAVCALFPCASFIFA 1402
I E ++ + + A+ A + + ++ V L + +
Sbjct: 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS 396
Query: 1403 YFT 1405
FT
Sbjct: 397 VFT 399
Score = 38.8 bits (90), Expect = 0.017
Identities = 17/122 (13%), Positives = 34/122 (27%), Gaps = 11/122 (9%)
Query: 529 LMDLYGRRFTNLILCVPFVLGWVIMSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAEST 588
+++ G + L+ + + S AT + + + L V YI
Sbjct: 282 IINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341
Query: 589 EPRYRGAILAIVSLAISSGI----------FISHLLGTFLHWKTASAVCALFPFISCIFV 638
E R+ I + + + +G + V F IS +
Sbjct: 342 EVRFSATIYLVCF-CFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL 400
Query: 639 YS 640
Sbjct: 401 SG 402
Score = 31.1 bits (70), Expect = 4.1
Identities = 15/98 (15%), Positives = 25/98 (25%), Gaps = 11/98 (11%)
Query: 1 MSMATEVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSGI---- 56
S AT + + + L V YI E R+ I + +
Sbjct: 306 SSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCF-CFFKQLAMIF 364
Query: 57 ------FISHLLGTFLHWKTASAVCALFPFISCIFVYS 88
+ +G + V F IS +
Sbjct: 365 MSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 35.0 bits (81), Expect = 0.23
Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 17/118 (14%)
Query: 547 VLGWVIMSMAT--------EVWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILA 598
++ + + + ++ V FL G G+ PP + + RG I++
Sbjct: 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVS 158
Query: 599 IVSLAISSG-----IFISHLLGTFLHWKTA----SAVCALFPFISCIFVYSTPESPSW 647
+ + A + G + + F W A + L + + TP+S
Sbjct: 159 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL 216
Score = 34.6 bits (80), Expect = 0.29
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 7 VWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIVSLAISSG-----IFISHL 61
+ ++ V FL G G+ PP + + RG I+++ + A + G +
Sbjct: 119 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178
Query: 62 LGTFLHWKTA----SAVCALFPFISCIFVYSTPESPSW 95
+ F W A + L + + TP+S
Sbjct: 179 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL 216
Score = 34.3 bits (79), Expect = 0.40
Identities = 51/435 (11%), Positives = 115/435 (26%), Gaps = 98/435 (22%)
Query: 1267 ITPEDGTWIASMASLPTFIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLAT----- 1321
+ D + S S+ + + + + R+ ++ + L
Sbjct: 59 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA----GLILAAAVMLFMGFVPW 114
Query: 1322 ---EVWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIG-----IF 1373
+ V+ FL G+ G+ P + K RG + ++ A +G +
Sbjct: 115 ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL 174
Query: 1374 TAHLLGTFLHWKT----TSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLR 1429
+ F W + L +F TP+S
Sbjct: 175 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL------------------ 216
Query: 1430 GHTAESEFEFKSMLNHAERSTITKSENMTDKKKKLEWKKNILCTEFLK---PLAIILVFF 1486
E ++ +K ++ K I L I +
Sbjct: 217 --------------PPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV 262
Query: 1487 FVQQFSGLNTLIFYTV------------GISKEVSPDVNEYTATIVIDIVRVVMAF--VT 1532
FV L+ Y + + + ++ + +
Sbjct: 263 FV-------YLLRYGILDWSPTYLKEVKHFALD--------KSSWAYFLYEYAGIPGTLL 307
Query: 1533 CGLL--RIF--GRRPLALLSCLGTCLSLLGVASILKFMQGLLPSFMPVILLMFYMVFVSI 1588
CG + ++F R + ++ + + + ++ M + F+
Sbjct: 308 CGWMSDKVFRGNRGATGVFFMTLVTIATIV------YWMNPAGNPTVDMICMIVIGFLIY 361
Query: 1589 GLQQLPWMMIGELFPQATRELGSGISTCFAFL--TLFVVVKTGPLLFLSIGTPETFGLYG 1646
G L + EL P+ +G + F +L ++ G G F +
Sbjct: 362 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG-YTVDFFGWDGGFMVMI 420
Query: 1647 CITAFGFVFLYIFLP 1661
+ + L + +
Sbjct: 421 GGSILAVILLIVVMI 435
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.64
Identities = 6/17 (35%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 1404 FTPESPPWLASKGFTVQ 1420
+ +S P LA K T++
Sbjct: 32 YADDSAPALAIKA-TME 47
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase; HET:
NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB:
2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Length = 965
Score = 32.2 bits (73), Expect = 1.7
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 1225 YVRCDKLIAAGGP--LTATLAAGSAGAYSAVLL 1255
+V D L+ GP L A A +GA V+L
Sbjct: 126 HVHTDVLVVGAGPAGLAAAREASRSGA--RVML 156
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 30.7 bits (70), Expect = 4.0
Identities = 19/127 (14%), Positives = 33/127 (25%), Gaps = 10/127 (7%)
Query: 1284 FIACILGSFLMEMYGRRLTNLVLCIPFIMGWVIISLAT---EVWVILAGRFLTGFALGLS 1340
F + + + V+C + I VW +L L F G+
Sbjct: 249 FFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGML 308
Query: 1341 SPVALVYIAETTEPKYRGVLSALL------CTAVAIGIFTAHLLGTFLHWKTTSAVCALF 1394
P+A A P G AL+ + V + + L
Sbjct: 309 FPLATS-GAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLL 367
Query: 1395 PCASFIF 1401
++
Sbjct: 368 IVLCWLP 374
Score = 30.3 bits (69), Expect = 6.3
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 5/119 (4%)
Query: 1297 YGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETTEPKY 1356
GRR LV F++ ++ + + V++A + G G+ +A + E
Sbjct: 62 VGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ 121
Query: 1357 RGVLSALLCTAVAIGIFTAHLLG----TFLHWKTTSAVCALFPCASFIFAYFT-PESPP 1410
++LL + + A L+G T +W+ + PE+ P
Sbjct: 122 LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 493
Score = 31.1 bits (70), Expect = 4.0
Identities = 10/33 (30%), Positives = 11/33 (33%), Gaps = 5/33 (15%)
Query: 1225 YVRCDKLIAAGGP--LTATLAAGSAGAYSAVLL 1255
V D I GGP + A L V L
Sbjct: 106 RVVVDVAIIGGGPAGIGAALELQQYL---TVAL 135
>2c8e_E Exoenzyme C3, mono-ADP-ribosyltransferase C3; C3 exoenzyme, ARTT
motif, bacterial toxins, glycosyltransferase; 1.60A
{Clostridium botulinum} PDB: 2c8f_E* 1g24_A 1gzf_A*
1uzi_A* 2c89_A 2c8a_A 2a9k_B* 2a78_B* 1gze_A 2c8b_X
2c8c_A* 2c8d_A 2c8h_A* 2c8g_A*
Length = 211
Score = 30.2 bits (67), Expect = 4.6
Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 804 EKAFHWLRGHSDEF---DNELKSILDYANSAEKAFHWLRGHSDEFDNELKSIMDYAQNIT 860
++A W ++ +E ++I+ Y SA + LR + + +++ + +
Sbjct: 13 DQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLD 72
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine
betaine binding, substrate binding domain, venus FLY
cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB:
3l6h_A
Length = 256
Score = 30.1 bits (68), Expect = 4.7
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 784 VYFTPESPSWLASKGYTVQAEKAFHWLRGHSDEFDNE-----LKSILDYANSAEKAFHWL 838
T E+ + + KG + +A+ L + + + I + E A +W+
Sbjct: 185 TMGTSENINTIVRKGLKKENPEAYKVLDKF--NWTTKDMEAVMLDIQNGKTPEEAAKNWI 242
Query: 839 RGHSDEFD 846
+ H E D
Sbjct: 243 KDHQKEVD 250
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.139 0.423
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 25,612,690
Number of extensions: 1572415
Number of successful extensions: 3636
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3606
Number of HSP's successfully gapped: 60
Length of query: 1693
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1586
Effective length of database: 3,714,246
Effective search space: 5890794156
Effective search space used: 5890794156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (28.9 bits)