RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10222
(1693 letters)
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 74.7 bits (182), Expect = 3e-14
Identities = 48/412 (11%), Positives = 113/412 (27%), Gaps = 28/412 (6%)
Query: 1267 ITPEDGTWIASMASLPTFIACILGSFLMEMYGRR----LTNLVLCIPFIMGWVIISLATE 1322
+ D + S S+ + + + + R ++ + + +
Sbjct: 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115
Query: 1323 VWVILAGRFLTGFALGLSSPVALVYIAETTEPKYRGVLSALLCTAVAIGIFTAHLLGTFL 1382
+ V+ FL G+ G+ P + K RG + ++ A +G LL
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL---- 171
Query: 1383 HWKTTSAVCALFPCASFIFAYFTPESPPWLASKGFTVQAQQAFYWLRGHTAESEFEFKSM 1442
+ + + ++ + + A AF +R +
Sbjct: 172 -------------FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR------DTPQSCG 212
Query: 1443 LNHAERSTITKSENMTDKKKKLEWKKNILCTEFLKPLAIILVFFFVQQFSGLNTLIFYTV 1502
L E ++ +K ++ K I L + + L I
Sbjct: 213 LPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS 272
Query: 1503 GISKEVSPDVNEYTATIVIDIVRVVMAFVTCGLLRIFGRRPLALLSCLGTCLSLLGVASI 1562
+ ++ + T + + G L +
Sbjct: 273 PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 332
Query: 1563 LKFMQGLLPSFMPVILLMFYMVFVSIGLQQLPWMMIGELFPQATRELGSGISTCFAFLTL 1622
+ + + ++ M + F+ G L + EL P+ +G + F +L
Sbjct: 333 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 392
Query: 1623 FVVVKT-GPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQIED 1673
V G F + + + L + + K + Q +++
Sbjct: 393 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444
Score = 50.1 bits (118), Expect = 2e-06
Identities = 45/373 (12%), Positives = 92/373 (24%), Gaps = 54/373 (14%)
Query: 321 ITTEDASWIASMAALPMAVACVLGCIAMDSCGRR----FSNLILCIPFVLGWIIISSATK 376
+ D + S ++ + + D R ++ + + + +
Sbjct: 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115
Query: 377 VWLLCVGRFLTGLSIGFLTPPAIVYIAETSEPKYRGAFLAVSSLAISSGILVSHLLDHLP 436
+ ++ V FL G G PP + K RG ++V + A + G + LL L
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175
Query: 437 T------------VRHLGLVMALV-------------------------GPLPQRSYLHL 459
+++AL +++ L
Sbjct: 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL 235
Query: 460 GNRLFSFSYLTGYCLFQLLAAAGPIFATLGSGMTSGFSAVLLPQLESANSTIPITPEDGS 519
+ Y+ L +A A L G+ L A
Sbjct: 236 TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE 295
Query: 520 WIA---CVLSCILMDLYGRRFTNLILCVPFVLGWVIMSM-----ATEVWLICVGRFLTGL 571
+ +L + D R L + + A + + + G
Sbjct: 296 YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 355
Query: 572 SVGLSSPPSIVYIAESTEPRYRGAILAIVSL-----AISSGIFISHLLGTFLHWKTASAV 626
+ ++ E + G L + I F W V
Sbjct: 356 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 415
Query: 627 CALFPFISCIFVY 639
++ I +
Sbjct: 416 MIGGSILAVILLI 428
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 47.5 bits (111), Expect = 1e-05
Identities = 54/396 (13%), Positives = 101/396 (25%), Gaps = 41/396 (10%)
Query: 293 MGDFSSGTAVGFSAVLLPQLQSANSTIPITTEDASWIASMAALPMAVACVLGCIAMDSCG 352
+ F +G P + I+ D I + +L + L + D G
Sbjct: 14 LFFFFYFFIMGAYFPFFPIW--LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLG 71
Query: 353 RR----FSNLILCIPFVLGWIIISSATKVWLLCVGRFLTGLSIGFLTPPAIVYIAETSEP 408
R + + + F +I I + + VG + G+ +GF + E
Sbjct: 72 LRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK 131
Query: 409 KYRGAFLAVSSLAISSG------------------------------ILVSHLLDHLPTV 438
R + + IL L
Sbjct: 132 VSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDA 191
Query: 439 RHLGLVMALVGPLPQRSYLHLGNRLFSFSYLTGYCLFQLLAAAGPIFATLGSGMTSGFSA 498
V VG L L LF L L+ + +
Sbjct: 192 PSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFF 251
Query: 499 VLLPQLESANSTIPITPEDGSWIACVLSCILMDLYGRRFTNLILCVPFVLGWVIMSMATE 558
Q + E + + ++++ G + L+ + + S AT
Sbjct: 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS 311
Query: 559 VWLICVGRFLTGLSVGLSSPPSIVYIAESTEPRYRGAILAIV-SLAISSGIFISHLLGTF 617
+ + + L V YI E R+ I + + +L
Sbjct: 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGN 371
Query: 618 LH----WKTASAVCALFPFISCIFVYSTPESPSWLA 649
++ ++ A V L + T P L+
Sbjct: 372 MYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407
Score = 40.5 bits (93), Expect = 0.002
Identities = 42/422 (9%), Positives = 91/422 (21%), Gaps = 32/422 (7%)
Query: 993 VILLMSYIVFVSFGLQPLPWIMAGEHTELFFLHPSVIVKIFQVKYLGPLTIMSTVTCGLL 1052
+ + F F + ++ + S IF L L + + L
Sbjct: 9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSL-LFQPLFGLLS 67
Query: 1053 RITGRRPIAILSTLGTAFSLLGLALMLKYPQEELPSFIPVILLMSYIVFVSFGVQPLPWI 1112
G R + G + + P + + V +
Sbjct: 68 DKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV--------GSIVGGIYLGFCFN 119
Query: 1113 MAGEVRYFTTYYIIHNHLFPQVTREIGSGITTCFGFLALFCAVKTEPLLFRSIGTPGTFG 1172
+ F + + G + +G+
Sbjct: 120 AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALI 179
Query: 1173 LYGKSKTAIRQNPRWNGRDCLPEVVHSLSRNVNVGTCVKRYYESKYCEQQSSYVRCDKLI 1232
L A P HS ++
Sbjct: 180 LAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLS------------- 226
Query: 1233 AAGGPLTATLAAGSAGAYSAVLLPQLESANSTIPITPEDGTWIASMASLPTFIACILGSF 1292
L + + + S +T ++ +M L
Sbjct: 227 -----LYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPL 281
Query: 1293 LMEMYGRRLTNLVLCIPFIMGWVIISLATEVWVILAGRFLTGFALGLSSPVALVYIAETT 1352
++ G + L+ + + S AT ++ + L F + YI
Sbjct: 282 IINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341
Query: 1353 EPKYRGVLSALLCTAV-----AIGIFTAHLLGTFLHWKTTSAVCALFPCASFIFAYFTPE 1407
E ++ + + A + + ++ V L + + FT
Sbjct: 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401
Query: 1408 SP 1409
P
Sbjct: 402 GP 403
>d1giqa1 d.166.1.1 (A:3-209) Enzymatic component (Ia) of iota-toxin
{Clostridium perfringens [TaxId: 1502]}
Length = 207
Score = 30.2 bits (68), Expect = 1.8
Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 11/72 (15%)
Query: 821 LKSILDYANSAEKAFHWLRGHSDEF-----DNELKSIMDYAQNI------TITNSEDMNY 869
++ D+ E A W + ++ E +++ Y ++ + T +Y
Sbjct: 1 IERPEDFLKDKENAIQWEKKEAERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDY 60
Query: 870 KEKICEWKKNIL 881
+ + +K
Sbjct: 61 QIESNPREKEYK 72
>d1v7ra_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 186
Score = 29.4 bits (65), Expect = 2.3
Identities = 12/67 (17%), Positives = 21/67 (31%)
Query: 1612 GISTCFAFLTLFVVVKTGPLLFLSIGTPETFGLYGCITAFGFVFLYIFLPETKNKTLQQI 1671
G A+ + + G GF + IF+PE KT ++
Sbjct: 99 GAEDRRAYFKSVIGFYIDGKAYKFSGVTWGRISNEKRGTHGFGYDPIFIPEGSEKTFAEM 158
Query: 1672 EDDFKSK 1678
+ K+
Sbjct: 159 TIEEKNA 165
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga
maritima [TaxId: 2336]}
Length = 184
Score = 29.2 bits (65), Expect = 2.9
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 119 SESELKSMLNHAQKIT---ITKTENMVDKKKK 147
E + K + N QK+T I K + + + KK+
Sbjct: 148 PEDDAKRLENEIQKLTDEFIEKLDEVFEIKKE 179
Score = 29.2 bits (65), Expect = 2.9
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 671 SESELKSMLNHAQKIT---ITKTENMVDKKKK 699
E + K + N QK+T I K + + + KK+
Sbjct: 148 PEDDAKRLENEIQKLTDEFIEKLDEVFEIKKE 179
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus
thermophilus [TaxId: 274]}
Length = 185
Score = 29.1 bits (65), Expect = 3.0
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 119 SESELKSMLNHAQKIT---ITKTENMVDKKKK 147
SE E K QKIT I K + + +KK++
Sbjct: 150 SEDETKRAEAEIQKITDEFIAKADQLAEKKEQ 181
Score = 29.1 bits (65), Expect = 3.0
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 671 SESELKSMLNHAQKIT---ITKTENMVDKKKK 699
SE E K QKIT I K + + +KK++
Sbjct: 150 SEDETKRAEAEIQKITDEFIAKADQLAEKKEQ 181
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.139 0.423
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 6,177,501
Number of extensions: 287652
Number of successful extensions: 784
Number of sequences better than 10.0: 1
Number of HSP's gapped: 779
Number of HSP's successfully gapped: 25
Length of query: 1693
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1595
Effective length of database: 1,062,056
Effective search space: 1693979320
Effective search space used: 1693979320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.1 bits)