BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10223
(606 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 6/189 (3%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+LKD++ E G++ V+G GSGK LL++++ + GEI LDG+P P L +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA--GEIFLDGSPADPFLLRKNV 83
Query: 102 GYV-NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE 160
GYV + + I TVE+ + ++ + +G S + RI++VL + LS +A +
Sbjct: 84 GYVFQNPSSQIIGATVEEDVAFSLEI-MGLDESEMRK--RIKKVLELVGLSGLAAADPLN 140
Query: 161 LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEK 220
L+ + +R+ I + L +D L LDEP LDP S I +L S +L+T E
Sbjct: 141 LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHEL 200
Query: 221 PRSDVLPFL 229
D + F+
Sbjct: 201 EYLDDMDFI 209
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 101/212 (47%), Gaps = 13/212 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSPQLFQT 99
L ++SL+V GE +LG G+GK LE+I+ + G I+LDG T +SP+
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS-GRILLDGKDVTDLSPEKHDI 74
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS 159
Y N+ L P + V++ L + + R + AR DL + ++ RN
Sbjct: 75 AFVYQNY--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTAR------DLKIEHLLDRNPL 126
Query: 160 ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTME 219
L+ E +RV + LV +P +LLLDEP LDP + MLS K K++ +L +
Sbjct: 127 TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK-KNKLTVLHIT 185
Query: 220 KPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
+++ DR A + G LI G + E
Sbjct: 186 HDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 105/217 (48%), Gaps = 15/217 (6%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG-- 89
+ FGN L +I+L+++ GE +A+LG GSGK LL I+ T+ G+I D
Sbjct: 11 KKFGNFTA---LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTS-GKIYFDEKD 66
Query: 90 -TPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL 148
T + P+ G V L P +TV + + + L P R + ++R+V L
Sbjct: 67 VTELPPK--DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAP---REEIDKKVREVAKML 121
Query: 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
+ + R +L+ + +RV I LVK+P +LLLDEP NLD L + + L K
Sbjct: 122 HIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK 181
Query: 209 RKS-RAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
V +T + +++ L DR A + G+++ G
Sbjct: 182 ELGITTVYVTHD--QAEALAMADRIAVIREGEILQVG 216
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 17/198 (8%)
Query: 30 FQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG 89
++ FG+++ +LK I++ +R GEV+ V+G GSGK L ++ GEII+DG
Sbjct: 30 LKKSFGSLE---VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-FDEGEIIIDG 85
Query: 90 TPMSPQ-----LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN---ARI 141
+ + + G V R +L P +TV + A +V ++ R A+
Sbjct: 86 INLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPM-----KVRKWPREKAEAKA 140
Query: 142 RQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201
++L + L + A L+ + +RV I L +P ++L DEPT LDP ++S
Sbjct: 141 MELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS 200
Query: 202 MLSSYAKRKSRAVLLTME 219
++ A V++T E
Sbjct: 201 VMKQLANEGMTMVVVTHE 218
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 17/198 (8%)
Query: 30 FQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG 89
++ FG+++ +LK I++ +R GEV+ V+G GSGK L ++ GEII+DG
Sbjct: 9 LKKSFGSLE---VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-FDEGEIIIDG 64
Query: 90 TPMSPQ-----LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN---ARI 141
+ + + G V R +L P +TV + A +V ++ R A+
Sbjct: 65 INLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPM-----KVRKWPREKAEAKA 119
Query: 142 RQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201
++L + L + A L+ + +RV I L +P ++L DEPT LDP ++S
Sbjct: 120 MELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS 179
Query: 202 MLSSYAKRKSRAVLLTME 219
++ A V++T E
Sbjct: 180 VMKQLANEGMTMVVVTHE 197
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 11/191 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS-------P 94
ILK ISL V+ GE ++++G+ GSGK LL ++ + T G++ L+G +
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-PTEGKVFLEGKEVDYTNEKELS 77
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
L G+V LIP LT + + L +G + R +L++L L +
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVI-VPMLKMGK--PKKEAKERGEYLLSELGLGDKL 134
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
R EL+ E +RV I L +P+LL DEPT NLD +T ++ + + + V
Sbjct: 135 SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIV 194
Query: 215 LLTMEKPRSDV 225
++T E+ +++
Sbjct: 195 MVTHERELAEL 205
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 122/269 (45%), Gaps = 17/269 (6%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR----GEIILDGTPMSPQL 96
++ KDI+L++ GE + +G G GK LL +I+ + T+ GE ++ TP +
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--- 73
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
+ G V L P L+V + + + L+ + V N R+ QV L L+++ R
Sbjct: 74 -ERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDR 129
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
L+ + +RV IG LV +P + LLDEP NLD + +S KR R ++
Sbjct: 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY 189
Query: 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLCL--- 273
+ + + D+ L G + G L L ++ + F + +P M +L +
Sbjct: 190 VTHD-QVEAMTLADKIVVLDAGRVAQVGKP-LELYHYPADRFVAGFIGSPKMNFLPVKVT 247
Query: 274 -STVDRRSRERFIESNNQIVALVEKFKIE 301
+ +D+ E + + Q+ VE ++
Sbjct: 248 ATAIDQVQVELPMPNRQQVWLPVESRDVQ 276
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 122/269 (45%), Gaps = 17/269 (6%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR----GEIILDGTPMSPQL 96
++ KDI+L++ GE + +G G GK LL +I+ + T+ GE ++ TP +
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--- 73
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
+ G V L P L+V + + + L+ + V N R+ QV L L+++ R
Sbjct: 74 -ERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDR 129
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
L+ + +RV IG LV +P + LLDEP NLD + +S KR R ++
Sbjct: 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY 189
Query: 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLCL--- 273
+ + + D+ L G + G L L ++ + F + +P M +L +
Sbjct: 190 VTHD-QVEAMTLADKIVVLDAGRVAQVGKP-LELYHYPADRFVAGFIGSPKMNFLPVKVT 247
Query: 274 -STVDRRSRERFIESNNQIVALVEKFKIE 301
+ +D+ E + + Q+ VE ++
Sbjct: 248 ATAIDQVQVELPMPNRQQVWLPVESRDVQ 276
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 14/218 (6%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLFQ 98
ILK +S V PG+ LA++G G GK ++ ++ R T GEI +DG+ ++P+ +
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD-TLGGEIFIDGSEIKTLNPEHTR 1152
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLA---LSNVA 154
+ V+ L E +Y S+ QV R A I +A+L + V
Sbjct: 1153 SQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVG 1212
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
R ++L+ + +R+ I LV++P +LLLDE T LD S ++ L R+ R
Sbjct: 1213 DRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR--AREGRTC 1269
Query: 215 LLTMEKPRSDVLPFLDRTAYLCLGDLIYAGP-TRLMLE 251
++ R + + D A + G +I G T+LM E
Sbjct: 1270 IVIAH--RLNTVMNADCIAVVSNGTIIEKGTHTQLMSE 1305
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 85/179 (47%), Gaps = 7/179 (3%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT---PMSPQLFQ 98
IL+ ++L V G+ +A++GS G GK ++ ++ R +G+I +DG ++ + +
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD-VLKGKITIDGVDVRDINLEFLR 491
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL--ALSNVARR 156
V+ L + T+E+ + ++ + A + + L + +
Sbjct: 492 KNVAVVSQEPALF-NCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGD 550
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
++L+ + +R+ I LV++P +LLLDE T LD S ++ L AK ++ ++
Sbjct: 551 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIII 609
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 122/269 (45%), Gaps = 17/269 (6%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR----GEIILDGTPMSPQL 96
++ KDI+L++ GE + +G G GK LL +I+ + T+ GE ++ TP +
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--- 73
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
+ G V L P L+V + + + L+ + V N R+ QV L L+++ R
Sbjct: 74 -ERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDR 129
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
L+ + +RV IG LV +P + LLD+P NLD + +S KR R ++
Sbjct: 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIY 189
Query: 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLCL--- 273
+ + + D+ L G + G L L ++ + F + +P M +L +
Sbjct: 190 VTHD-QVEAMTLADKIVVLDAGRVAQVGKP-LELYHYPADRFVAGFIGSPKMNFLPVKVT 247
Query: 274 -STVDRRSRERFIESNNQIVALVEKFKIE 301
+ +D+ E + + Q+ VE ++
Sbjct: 248 ATAIDQVQVELPMPNRQQVWLPVESRDVQ 276
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEI-ILDGTPM 92
FG++ +KD+SLE++ GE L +LG G GK L I+ TRG+I I D
Sbjct: 16 FGDVTA---VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEE-PTRGQIYIEDNLVA 71
Query: 93 SPQ--LF----QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLA 146
P+ +F + V L P TV + + L +V + + R+R+V
Sbjct: 72 DPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLR---KVPKQEIDKRVREVAE 128
Query: 147 DLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L L+ + R EL+ + +RV +G +++ P + L DEP NLD
Sbjct: 129 XLGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLD 174
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 19/222 (8%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEI-ILDGT 90
+VFG + ++++SLEV+ GE + +LG G GK L +I+ +RG+I I D
Sbjct: 11 KVFGEVTA---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-PSRGQIYIGDKL 66
Query: 91 PMSPQ--LF----QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV 144
P+ +F V L P +TV + + L +V R + R+R+V
Sbjct: 67 VADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREV 123
Query: 145 LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
L L+ + R EL+ + +RV +G +V+ P + L+DEP NLD L V M +
Sbjct: 124 AELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD---AKLRVRMRA 180
Query: 205 SYAK--RKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
K R+ + + + + + DR A + G L G
Sbjct: 181 ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 13/209 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILD-------GTPMSPQ 95
L ++++ + GE +LG G+GK + +I+ +T GE+ D G + P
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST-GELYFDDRLVASNGKLIVPP 79
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
G V L P+LT + + + ++S+ R+ +V L + +V
Sbjct: 80 -EDRKIGMVFQTWALYPNLTAFENIAFPL---TNMKMSKEEIRKRVEEVAKILDIHHVLN 135
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
EL+ ++ +RV + LVKDP LLLLDEP NLD +++ R +L
Sbjct: 136 HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLL 195
Query: 216 LTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
+ P +D+ DR L G L+ G
Sbjct: 196 VVSHDP-ADIFAIADRVGVLVKGKLVQVG 223
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 13/209 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILD-------GTPMSPQ 95
L ++++ + GE +LG G+GK + +I+ +T GE+ D G + P
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST-GELYFDDRLVASNGKLIVPP 79
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
G V L P+LT + + + ++S+ R+ +V L + +V
Sbjct: 80 -EDRKIGMVFQTWALYPNLTAFENIAFPL---TNMKMSKEEIRKRVEEVAKILDIHHVLN 135
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
EL+ + +RV + LVKDP LLLLDEP NLD +++ R +L
Sbjct: 136 HFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLL 195
Query: 216 LTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
+ P +D+ DR L G L+ G
Sbjct: 196 VVSHDP-ADIFAIADRVGVLVKGKLVQVG 223
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 87/181 (48%), Gaps = 10/181 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLFQ 98
IL+DIS E +P ++A G G GK + ++ R T GEI +DG P +S + ++
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA-GEITIDGQPIDNISLENWR 75
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGP----QVSRYVRNARIRQVLADLALSNVA 154
+ G+V+ + ++ T+ + L Y QV + + D + V
Sbjct: 76 SQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVG 134
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
R + +++ + +R+ I +++P +L+LDE T +LD S ++ L S K ++ V
Sbjct: 135 ERGV-KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLV 193
Query: 215 L 215
+
Sbjct: 194 I 194
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 94/206 (45%), Gaps = 11/206 (5%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------Q 95
LK+++L ++ GE ++++G GSGK +L +I T GE+ +D + +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-PTEGEVYIDNIKTNDLDDDELTK 79
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VA 154
+ + G+V + +LIP LT + + +S R R + L L A
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFA 139
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
++L+ + +RV I L +P ++L D+PT LD + I+ +L + + V
Sbjct: 140 NHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTV 199
Query: 215 LLTMEKPRSDVLPFLDRTAYLCLGDL 240
++ +V F +R YL G++
Sbjct: 200 VVVTHD--INVARFGERIIYLKDGEV 223
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 14/211 (6%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-- 95
Q +L DISL + PGE+L ++G+ G GK LL ++ + GEI L G + +
Sbjct: 15 QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDS-GEISLSGKTIFSKNT 73
Query: 96 ---LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN-ARIRQVLADLALS 151
+ + GY+ L P LTV + + Y +G R + RI +L +S
Sbjct: 74 NLPVRERRLGYLVQEGVLFPHLTVYRNIAYG----LGNGKGRTAQERQRIEAMLELTGIS 129
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP-LSTYLIVSMLSSYAKRK 210
+A R EL+ + +R + L DP L+LLDEP LD L + M+++
Sbjct: 130 ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANG 189
Query: 211 SRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI 241
AV ++ + R + L + DR A + G ++
Sbjct: 190 KSAVFVSHD--REEALQYADRIAVMKQGRIL 218
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 11/186 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLFQ 98
+L+ +SLEV+ G+ LA++GS G GK +++++ R G + LDG ++ Q +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD-PMAGSVFLDGKEIKQLNVQWLR 1106
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIG-PQVSRYVRNARIRQV---LADLALSNVA 154
G V+ L E Y + ++ R + A I Q L D + V
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
+ ++L+ + +R+ I LV+ P +LLLDE T LD S ++ L R+ R
Sbjct: 1167 DKG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK--AREGRTC 1223
Query: 215 LLTMEK 220
++ +
Sbjct: 1224 IVIAHR 1229
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 92/198 (46%), Gaps = 13/198 (6%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLFQ 98
ILK ++L+V+ G+ +A++G+ G GK ++++ R G + +DG ++ + +
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD-PLDGMVSIDGQDIRTINVRYLR 463
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL--ALSNVARR 156
G V+ L + T+ + + Y ++ + V+ A + L +
Sbjct: 464 EIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGE 522
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
++L+ + +R+ I LV++P +LLLDE T LD S ++ + L R+ R ++
Sbjct: 523 RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK--AREGRTTIV 580
Query: 217 TMEK----PRSDVLPFLD 230
+ +DV+ D
Sbjct: 581 IAHRLSTVRNADVIAGFD 598
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 94/206 (45%), Gaps = 11/206 (5%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------Q 95
LK+++L ++ GE ++++G GSGK +L +I T GE+ +D + +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-PTEGEVYIDNIKTNDLDDDELTK 79
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VA 154
+ + G+V + +LIP LT + + +S R R + L L A
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFA 139
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
++L+ + +RV I L +P ++L D+PT LD + I+ +L + + V
Sbjct: 140 NHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTV 199
Query: 215 LLTMEKPRSDVLPFLDRTAYLCLGDL 240
++ +V F +R YL G++
Sbjct: 200 VVVTHD--INVARFGERIIYLKDGEV 223
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 11/186 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLFQ 98
+L+ +SLEV+ G+ LA++GS G GK +++++ R G + LDG ++ Q +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD-PMAGSVFLDGKEIKQLNVQWLR 1106
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIG-PQVSRYVRNARIRQV---LADLALSNVA 154
G V+ L E Y + ++ R + A I Q L D + V
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
+ ++L+ + +R+ I LV+ P +LLLDE T LD S ++ L R+ R
Sbjct: 1167 DKG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK--AREGRTC 1223
Query: 215 LLTMEK 220
++ +
Sbjct: 1224 IVIAHR 1229
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 92/198 (46%), Gaps = 13/198 (6%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLFQ 98
ILK ++L+V+ G+ +A++G+ G GK ++++ R G + +DG ++ + +
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD-PLDGMVSIDGQDIRTINVRYLR 463
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL--ALSNVARR 156
G V+ L + T+ + + Y ++ + V+ A + L +
Sbjct: 464 EIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGE 522
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
++L+ + +R+ I LV++P +LLLDE T LD S ++ + L R+ R ++
Sbjct: 523 RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK--AREGRTTIV 580
Query: 217 TMEK----PRSDVLPFLD 230
+ +DV+ D
Sbjct: 581 IAHRLSTVRNADVIAGFD 598
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSPQL 96
A ++ +S ++R GE++ +LG GSGK +L +I+ T+G++ + G T + PQ
Sbjct: 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER-PTKGDVWIGGKRVTDLPPQ- 85
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
+ G V L +TV + + +V + +AR+R++L + L + A R
Sbjct: 86 -KRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANR 141
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
EL+ + +RV + L P +LL DEP +D
Sbjct: 142 FPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 13/221 (5%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ 95
N A ILKDI+L + GE +A +G G GK L+ +I R T G+I++DG +
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD-VTSGQILIDGHNIKDF 408
Query: 96 L---FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL-- 150
L + G V + +++ S TV++ + + +V + A + +L
Sbjct: 409 LTGSLRNQIGLV-QQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGY 467
Query: 151 -SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
+ V R + +L+ + +R+ I + +P +L+LDE T LD S +I L +K
Sbjct: 468 DTEVGERGV-KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD 526
Query: 210 KSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
++ ++ R + D+ + G ++ G R ++
Sbjct: 527 RTTLIV----AHRLSTITHADKIVVIENGHIVETGTHRELI 563
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 18/212 (8%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEV---ISRRSSGTTRGEIILDGTPMSPQLFQ 98
+ + ++ ++ G++LAVLG G GK LL++ I R G + PQ F
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE---VYQSIGFVPQFFS 76
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
+ Y L+ T T +A S QV+ Q L L L+++A+R
Sbjct: 77 SPFAYSVLDIVLMGRSTHINT--FAKPKSHDYQVAM--------QALDYLNLTHLAKREF 126
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTM 218
+ L+ + + ++I + + L+LLDEPT LD + +++S+L A+ ++ V+ T
Sbjct: 127 TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTT 186
Query: 219 EKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
+P + V+ ++T L + + G TR +L
Sbjct: 187 HQP-NQVVAIANKTLLLNKQNFKF-GETRNIL 216
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 10/165 (6%)
Query: 30 FQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG 89
++ FG ++ + +S EV+ GE +A+LG G GK L +++ T+ GEI D
Sbjct: 9 LKKYFGKVKA---VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTS-GEIYFDD 64
Query: 90 TPMS--PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLAD 147
++ P ++ G V L P +TV + + + ++S+ R+ ++
Sbjct: 65 VLVNDIPPKYRE-VGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARK 120
Query: 148 LALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L + N+ R ++L+ + +RV + LVK P +LL DEP NLD
Sbjct: 121 LLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 84/171 (49%), Gaps = 5/171 (2%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+L ++ V+PG ++AVLG GSGK L+ +I R RG + +D + +
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID-PERGRVEVDELDVRTVKLKDLR 416
Query: 102 GYVNH--RTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR--RN 157
G+++ + ++ S T+++ L + + ++ + A+I + L +R R
Sbjct: 417 GHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERG 476
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
+ + +R+ I LVK P +L+LD+ T ++DP++ I+ L Y K
Sbjct: 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK 527
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 17/208 (8%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS----PQLFQ 98
L ++SL V G++ V+G+ G+GK L+ ++ T G +++DG ++ +L +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTEGSVLVDGQELTTLSESELTK 79
Query: 99 T--TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGP--QVSRYVRNARIRQVLADLALSNVA 154
G + +L+ S TV + L P +V R R+ ++L+ + L +
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR-----RVTELLSLVGLGDKH 134
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
S L+ + +RV I L +P +LL DE T LDP +T I+ +L +R +
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTI 194
Query: 215 LLTMEKPRSDVLP-FLDRTAYLCLGDLI 241
LL + DV+ D A + G+LI
Sbjct: 195 LLITHE--MDVVKRICDCVAVISNGELI 220
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 22/234 (9%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEV---ISRRSSGTTRGEIILDGTPMS-----P 94
LK I++ ++ GEV A+LG G GK L + I + SSG I+ D P+
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG----RILFDNKPIDYSRKGI 79
Query: 95 QLFQTTCGYVNHRTD-LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ + G V D + S +V Q + + A + ++ R+ L + ++
Sbjct: 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGA---VNMKLPEDEIRKRVDNALKRTGIEHL 136
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRA 213
+ L+ + +RV I LV +P +L+LDEPT LDP+ I+ +L K
Sbjct: 137 KDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGIT 196
Query: 214 VLLTMEKPRSDVLP-FLDRTAYLCLGDLIYAGPTRLML---EYFRSIGFPCPEL 263
+++ D++P + D + G +I G + + E R + P +
Sbjct: 197 IIIATHD--IDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRI 248
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 31/227 (13%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQ 95
+ +IL +I+L ++ GEV+ ++G GSGK L ++I R G++++DG ++ P
Sbjct: 17 SPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPN 75
Query: 96 LFQTTCGYVNHRTDLI------------PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ 143
+ G V L+ P ++VE+ + YAA L+ +R
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISELRE----- 129
Query: 144 VLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
+ + + L+ + +R+ I LV +P +L+ DE T LD S ++I+ +
Sbjct: 130 -----GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 184
Query: 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
K R V++ R + DR + G ++ G + +L
Sbjct: 185 HKIC--KGRTVIIIAH--RLSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 31/227 (13%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQ 95
+ +IL +I+L ++ GEV+ ++G GSGK L ++I R G++++DG ++ P
Sbjct: 17 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPN 75
Query: 96 LFQTTCGYVNHRTDLI------------PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ 143
+ G V L+ P ++VE+ + YAA L+ +R
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISELRE----- 129
Query: 144 VLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
+ + + L+ + +R+ I LV +P +L+ DE T LD S ++I+ +
Sbjct: 130 -----GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 184
Query: 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
K R V++ R + DR + G ++ G + +L
Sbjct: 185 HKIC--KGRTVIIIAH--RLSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 100/213 (46%), Gaps = 17/213 (7%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---- 93
+T L ++SL V G++ V+G+ G+GK L+ ++ T G +++DG ++
Sbjct: 39 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTEGSVLVDGQELTTLSE 97
Query: 94 PQLFQT--TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGP--QVSRYVRNARIRQVLADLA 149
+L + G + +L+ S TV + L P +V R R+ ++L+ +
Sbjct: 98 SELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR-----RVTELLSLVG 152
Query: 150 LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
L + S L+ + +RV I L +P +LL D+ T LDP +T I+ +L +R
Sbjct: 153 LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 210 KSRAVLLTMEKPRSDVLP-FLDRTAYLCLGDLI 241
+LL + DV+ D A + G+LI
Sbjct: 213 LGLTILLITHE--XDVVKRICDCVAVISNGELI 243
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 31/227 (13%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQ 95
+ +IL +I+L ++ GEV+ ++G GSGK L ++I R G++++DG ++ P
Sbjct: 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPN 73
Query: 96 LFQTTCGYVNHRTDLI------------PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ 143
+ G V L+ P ++VE+ + YAA L+ +R
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISELRE----- 127
Query: 144 VLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
+ + + L+ + +R+ I LV +P +L+ DE T LD S ++I+ +
Sbjct: 128 -----GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 182
Query: 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
K R V++ R + DR + G ++ G + +L
Sbjct: 183 HKIC--KGRTVIIIAH--RLSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 31/227 (13%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQ 95
+ +IL +I+L ++ GEV+ ++G GSGK L ++I R G++++DG ++ P
Sbjct: 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPN 79
Query: 96 LFQTTCGYVNHRTDLI------------PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ 143
+ G V L+ P ++VE+ + YAA L+ +R
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISELRE----- 133
Query: 144 VLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
+ + + L+ + +R+ I LV +P +L+ DE T LD S ++I+ +
Sbjct: 134 -----GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 188
Query: 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
K R V++ R + DR + G ++ G + +L
Sbjct: 189 HKIC--KGRTVIIIAH--RLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 100/213 (46%), Gaps = 17/213 (7%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---- 93
+T L ++SL V G++ V+G+ G+GK L+ ++ T G +++DG ++
Sbjct: 39 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTEGSVLVDGQELTTLSE 97
Query: 94 PQLFQT--TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGP--QVSRYVRNARIRQVLADLA 149
+L + G + +L+ S TV + L P +V R R+ ++L+ +
Sbjct: 98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR-----RVTELLSLVG 152
Query: 150 LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
L + S L+ + +RV I L +P +LL D+ T LDP +T I+ +L +R
Sbjct: 153 LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 210 KSRAVLLTMEKPRSDVLP-FLDRTAYLCLGDLI 241
+LL + DV+ D A + G+LI
Sbjct: 213 LGLTILLITHE--MDVVKRICDCVAVISNGELI 243
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 31/227 (13%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQ 95
+ +IL +I+L ++ GEV+ ++G GSGK L ++I R G++++DG ++ P
Sbjct: 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPN 73
Query: 96 LFQTTCGYVNHRTDLI------------PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ 143
+ G V L+ P ++VE+ + YAA L+ +R
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISELRE----- 127
Query: 144 VLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
+ + + L+ + +R+ I LV +P +L+ DE T LD S ++I+ +
Sbjct: 128 -----GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 182
Query: 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
K R V++ R + DR + G ++ G + +L
Sbjct: 183 HKIC--KGRTVIIIA--ARLSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 31/227 (13%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQ 95
+ +IL +I+L ++ GEV+ ++G GSGK L ++I R G++++DG ++ P
Sbjct: 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPN 79
Query: 96 LFQTTCGYVNHRTDLI------------PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ 143
+ G V L+ P ++VE+ + YAA L+ +R
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISELRE----- 133
Query: 144 VLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
+ + + L+ + +R+ I LV +P +L+ DE T LD S ++I+ +
Sbjct: 134 -----GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 188
Query: 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
K R V++ R + DR + G ++ G + +L
Sbjct: 189 HKIC--KGRTVIIIA--ARLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 31/227 (13%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQ 95
+ +IL +I+L ++ GEV+ ++G GSGK L ++I R G++++DG ++ P
Sbjct: 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPN 79
Query: 96 LFQTTCGYVNHRTDLI------------PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ 143
+ G V L+ P ++VE+ + YAA L+ +R
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDFISELRE----- 133
Query: 144 VLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
+ + + L+ + +R+ I LV +P +L+ D+ T LD S ++I+ +
Sbjct: 134 -----GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNM 188
Query: 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
K R V++ R + DR + G ++ G + +L
Sbjct: 189 HKIC--KGRTVIIIAH--RLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 10/170 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSPQLFQ 98
I +D SL + G V A++G GSGK +L ++ R + G I LDG ++P +
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS-GTISLDGHDIRQLNPVWLR 417
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL-----ALSNV 153
+ G V+ L S ++ + + Y A R A + +A + + V
Sbjct: 418 SKIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTV 476
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
L+ + +R+ I L+K+P +LLLDE T LD + YL+ L
Sbjct: 477 VGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEAL 526
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 95/207 (45%), Gaps = 17/207 (8%)
Query: 1 MVEITITGEEEYYLKIDLQH----PALVETGSCFQRV-FGNI-----QTALILKDISLEV 50
M+++ + E + +DL+ P VE + F N+ + +LKDI+ +
Sbjct: 319 MIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHI 378
Query: 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT---PMSPQLFQTTCGYVNHR 107
+PG+ +A++G GSGK ++ ++ R RG+I++DG + +++ G V
Sbjct: 379 KPGQKVALVGPTGSGKTTIVNLLMRFYD-VDRGQILVDGIDIRKIKRSSLRSSIGIVLQD 437
Query: 108 TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL--ALSNVARRNISELTPSE 165
T L S TV++ L Y + ++ + + L V N +L+ +
Sbjct: 438 TILF-STTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQ 496
Query: 166 HRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ + I + +P +L+LDE T N+D
Sbjct: 497 RQLLAITRAFLANPKILILDEATSNVD 523
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 10/170 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSPQLFQ 98
I +D SL + G V A++G GSGK +L ++ R + G I LDG ++P +
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS-GTISLDGHDIRQLNPVWLR 448
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL-----ALSNV 153
+ G V+ L S ++ + + Y A R A + +A + + V
Sbjct: 449 SKIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTV 507
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
L+ + +R+ I L+K+P +LLLDE T LD + YL+ L
Sbjct: 508 VGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEAL 557
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 16/218 (7%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS-- 93
++Q ++ D+SL + GE++A++G G+GK LL +++ S + GE L G ++
Sbjct: 20 HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS-PSHGECHLLGQNLNSW 78
Query: 94 -PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
P+ T + ++L +V + + + P R A ++QV+A
Sbjct: 79 QPKALARTRAVMRQYSELAFPFSVSEVI----QMGRAPYGGSQDRQA-LQQVMAQTDCLA 133
Query: 153 VARRNISELTPSEHRRVVIGTQLVK------DPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
+A+R+ L+ E +RV + L + P L LDEPT LD + +L
Sbjct: 134 LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQL 193
Query: 207 AKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
+++ AV + L + DR L G L+ G
Sbjct: 194 TRQEPLAVCCVLHDLNLAAL-YADRIMLLAQGKLVACG 230
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 23/186 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISR---RSSGTTRGEIILDGTPMSPQLFQT 99
L+D+S V PG+ LA++G G+GK +L ++ R SSG R +DG +S Q
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR----IDGQDIS----QV 121
Query: 100 TCGYVNHRTDLIPSLTV------EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
T + ++P TV + Y + +V + A I + +A
Sbjct: 122 TQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAI--MAFPEG 179
Query: 154 ARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
R + E L+ E +RV I ++K P ++LLDE T LD + I + L+
Sbjct: 180 YRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCAN 239
Query: 210 KSRAVL 215
++ V+
Sbjct: 240 RTTIVV 245
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 17/202 (8%)
Query: 30 FQRV---FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKR---ALLEVISRRSSGTTRG 83
FQ V + N L+L+ ++ +RPGEV A++G GSGK ALL+ + + T G
Sbjct: 17 FQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ----PTGG 72
Query: 84 EIILDGTPMSPQ----LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNA 139
+++LDG P+ PQ V + E Y +++ +
Sbjct: 73 QLLLDGKPL-PQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKS 131
Query: 140 RIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197
++ L S+L+ + + V + L++ P +L+LD+ T LD S
Sbjct: 132 GAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL 191
Query: 198 LIVSMLSSYAKRKSRAVLLTME 219
+ +L +R SR+VLL +
Sbjct: 192 QVEQLLYESPERYSRSVLLITQ 213
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 18/223 (8%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL---DGT 90
FGN + ++L ++ GE L +LG G GK L +I+ T G I D T
Sbjct: 21 FGNFTA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-PTEGRIYFGDRDVT 76
Query: 91 PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
+ P+ V + P +TV + + + + P+ + R+R L +
Sbjct: 77 YLPPK--DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEI---DKRVRWAAELLQI 131
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK-- 208
+ R ++L+ + +RV + +V +P +LL+DEP NLD L V+M + K
Sbjct: 132 EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD---AKLRVAMRAEIKKLQ 188
Query: 209 RKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG-PTRLML 250
+K + + + + + + DR A + G L+ G PT + L
Sbjct: 189 QKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 18/223 (8%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL---DGT 90
FGN + ++L ++ GE L +LG G GK L +I+ T G I D T
Sbjct: 22 FGNFTA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-PTEGRIYFGDRDVT 77
Query: 91 PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
+ P+ V + P +TV + + + + P+ + R+R L +
Sbjct: 78 YLPPK--DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEI---DKRVRWAAELLQI 132
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK-- 208
+ R ++L+ + +RV + +V +P +LL+DEP NLD L V+M + K
Sbjct: 133 EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD---AKLRVAMRAEIKKLQ 189
Query: 209 RKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG-PTRLML 250
+K + + + + + + DR A + G L+ G PT + L
Sbjct: 190 QKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 232
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 24/221 (10%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
L+++SL + GE L V G+ GSGK LL++++ T+ G+++ DG + G
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS-GDVLYDG--------ERKKG 75
Query: 103 YVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN----------ARIRQVLADLALSN 152
Y R ++ + + ++A + +V+ V+N + L +
Sbjct: 76 Y-EIRRNIGIAFQYPEDQFFAER--VFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDS 132
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
R L+ E RRV I + +V +P +L+LDEP V LD ++ ++ +
Sbjct: 133 FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 192
Query: 213 AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYF 253
+L++ + V+ +DR L G ++ G LE +
Sbjct: 193 VILISHDI--ETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 231
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 24/221 (10%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
L+++SL + GE L V G+ GSGK LL++++ T+ G+++ DG + G
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS-GDVLYDG--------ERKKG 73
Query: 103 YVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN----------ARIRQVLADLALSN 152
Y R ++ + + ++A + +V+ V+N + L +
Sbjct: 74 Y-EIRRNIGIAFQYPEDQFFAER--VFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDS 130
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
R L+ E RRV I + +V +P +L+LDEP V LD ++ ++ +
Sbjct: 131 FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 190
Query: 213 AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYF 253
+L++ + V+ +DR L G ++ G LE +
Sbjct: 191 VILISHDI--ETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 11/164 (6%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG-----TPM 92
Q ILK IS ++ G+ + G G+GK LL +++ T+ G + L G
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATS-GTVNLFGKXPGKVGY 90
Query: 93 SPQLFQTTCGYVNHR--TDLIPSLTVEQTLYYAAHLSIG--PQVSRYVRNARIRQVLADL 148
S + + G+V+H V + A SIG + +RN Q+L +
Sbjct: 91 SAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN-EAHQLLKLV 149
Query: 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
S A++ I L+ E +RV I L P +L+LDEP LD
Sbjct: 150 GXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 11/138 (7%)
Query: 58 VLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSPQLFQTTCGYVNHRTDLIPSL 114
+LG G+GK LE+I+ RGE+ L+G TP+ P+ + G+V L P L
Sbjct: 29 LLGPTGAGKSVFLELIAGIVK-PDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHL 85
Query: 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQ 174
+V + + Y V R R+ R+R++ L ++++ R + L+ E +RV +
Sbjct: 86 SVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARA 140
Query: 175 LVKDPVLLLLDEPTVNLD 192
LV P LLLLDEP +D
Sbjct: 141 LVIQPRLLLLDEPLSAVD 158
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 20/222 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSG--TTRGEIILDGTPMSPQL 96
ILK IS E+ GE+ ++G G+GK L +IS + SSG T G+ +++ P
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE----EPHE 85
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAA--HLSIGPQVSRYVRNARIRQVLADLA-LSNV 153
+ Y+ ++ + L + A + S ++ V A ++A L
Sbjct: 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA------TEIAGLGEK 139
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRA 213
+ +S + R+++I L+ +P L +LDEPT LD L+ + +L ++
Sbjct: 140 IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG--L 197
Query: 214 VLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRS 255
+L +V DR A + G ++ G + E +++
Sbjct: 198 TILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 239
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 7/170 (4%)
Query: 30 FQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT-RGEIILD 88
+ ++ +I ILK ++L V GEV A++G G+GK L ++++ T RGEI+LD
Sbjct: 6 IRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLD 65
Query: 89 GT---PMSPQLFQTTCGYVNHRTDL-IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV 144
G +SP ++ + + +P +T+ L A +G +V ++++
Sbjct: 66 GENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKA 125
Query: 145 LA--DLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L D S ++R + E +R I LV +P +LDE LD
Sbjct: 126 LELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 27/221 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTT--RGEIILDGTP------ 91
L +S+ V G+V ++G GSGK L+ VI+ + G + I + P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 92 ------MSPQLFQTTCGYVNHRT-DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV 144
+PQ + N ++ P + +L+Y + P+ V A ++
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI---PKEEEMVEKA--FKI 137
Query: 145 LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
L L LS++ R EL+ + + V IG L+ +P ++++DEP + P + + +
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH---DIFN 194
Query: 205 SYAKRKSRAVLLTMEKPRSD-VLPFLDRTAYLCLGDLIYAG 244
+ K++ + + + R D VL ++D + G +I G
Sbjct: 195 HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 49 EVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT-PMSPQLFQTTC-GYVNH 106
E+R GEV+ ++G G GK +++++ T G++ D T PQ + G V
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKVEWDLTVAYKPQYIKAEYEGTVYE 436
Query: 107 RTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEH 166
I S + Y ++L L + ++ RN+ +L+ E
Sbjct: 437 LLSKIDSSKLNSNFYKT-------------------ELLKPLGIIDLYDRNVEDLSGGEL 477
Query: 167 RRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTME 219
+RV I L++D + LLDEP+ LD + L VS + K+ L +E
Sbjct: 478 QRVAIAATLLRDADIYLLDEPSAYLD-VEQRLAVSRAIRHLMEKNEKTALVVE 529
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 94/214 (43%), Gaps = 12/214 (5%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQT 99
LK I+ + G A++G GSGK + +++ R G+I + G ++ ++
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA--EGDIKIGGKNVNKYNRNSIRS 93
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL--ALSNVARRN 157
G V T L T++ + Y + +V + ++A++ + L +
Sbjct: 94 IIGIVPQDTILFNE-TIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNK 152
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
+L+ E +R+ I L+KDP +++ DE T +LD + YL + RK+R +++
Sbjct: 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL--RKNRTLIII 210
Query: 218 MEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
R + + L G ++ G + +L+
Sbjct: 211 AH--RLSTISSAESIILLNKGKIVEKGTHKDLLK 242
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 49 EVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT-PMSPQLFQTTC-GYVNH 106
E+R GEV+ ++G G GK +++++ T G++ D T PQ + G V
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKVEWDLTVAYKPQYIKAEYEGTVYE 422
Query: 107 RTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEH 166
I S + Y ++L L + ++ RN+ +L+ E
Sbjct: 423 LLSKIDSSKLNSNFYKT-------------------ELLKPLGIIDLYDRNVEDLSGGEL 463
Query: 167 RRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTME 219
+RV I L++D + LLDEP+ LD + L VS + K+ L +E
Sbjct: 464 QRVAIAATLLRDADIYLLDEPSAYLD-VEQRLAVSRAIRHLMEKNEKTALVVE 515
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 22/178 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
L +S EVR GE+L ++G G+GK LL ++ +SG +G I G P+ +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAGQPLE---AWSATK 70
Query: 103 YVNHRTDLIPSLTVEQTLYYAA----HLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
HR L+ +QT +A +L++ R + V LAL + R+
Sbjct: 71 LALHRA----YLSQQQTPPFATPVWHYLTL--HQHDKTRTELLNDVAGALALDDKLGRST 124
Query: 159 SELTPSEHRRVVIGTQLVK-----DPV--LLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
++L+ E +RV + +++ +P LLLLD+P +LD + +LS+ +++
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQ 182
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 27/221 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTT--RGEIILDGTP------ 91
L +S+ V G+V ++G GSGK L+ VI+ + G + I + P
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 92 ------MSPQLFQTTCGYVNHRT-DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV 144
+PQ + N ++ P + +L+Y + P+ V A ++
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI---PKEEEMVEKA--FKI 137
Query: 145 LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
L L LS++ R EL+ + + V IG L+ +P ++++DEP + P + + +
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH---DIFN 194
Query: 205 SYAKRKSRAVLLTMEKPRSD-VLPFLDRTAYLCLGDLIYAG 244
+ K++ + + + R D VL ++D + G +I G
Sbjct: 195 HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 21/172 (12%)
Query: 49 EVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT-PMSPQLFQTTCGYVNHR 107
E++ GEV+ ++G G GK ++ ++ T G+I D T PQ +
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEE-PTEGKIEWDLTVAYKPQYIKADY------ 360
Query: 108 TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHR 167
E T+Y L S+ N ++L L + ++ R ++EL+ E +
Sbjct: 361 ---------EGTVY---ELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQ 408
Query: 168 RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTME 219
RV I L++D + LLDEP+ LD + L VS + K+ L +E
Sbjct: 409 RVAIAATLLRDADIYLLDEPSAYLD-VEQRLAVSRAIRHLXEKNEKTALVVE 459
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 27/221 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTT--RGEIILDGTP------ 91
L +S+ V G+V ++G GSGK L+ VI+ + G + I + P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 92 ------MSPQLFQTTCGYVNHRT-DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV 144
+PQ + N ++ P + +L+Y + P+ V A ++
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI---PKEEEMVEKA--FKI 137
Query: 145 LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
L L LS++ R EL+ + + V IG L+ +P ++++D+P + P + + +
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAH---DIFN 194
Query: 205 SYAKRKSRAVLLTMEKPRSD-VLPFLDRTAYLCLGDLIYAG 244
+ K++ + + + R D VL ++D + G +I G
Sbjct: 195 HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 22/178 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
L +S EVR GE+L ++G G+GK LL + +SG +G I G P+ +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG--KGSIQFAGQPLE---AWSATK 70
Query: 103 YVNHRTDLIPSLTVEQTLYYAA----HLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
HR L+ +QT +A +L++ R + V LAL + R+
Sbjct: 71 LALHRA----YLSQQQTPPFATPVWHYLTL--HQHDKTRTELLNDVAGALALDDKLGRST 124
Query: 159 SELTPSEHRRVVIGTQLVK-----DPV--LLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
++L+ E +RV + +++ +P LLLLDEP +LD + +LS+ +++
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQ 182
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 22/178 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
L +S EVR GE+L ++G G+GK LL + +SG +G I G P+ +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG--KGSIQFAGQPLE---AWSATK 70
Query: 103 YVNHRTDLIPSLTVEQTLYYAA----HLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
HR L+ +QT +A +L++ R + V LAL + R+
Sbjct: 71 LALHRA----YLSQQQTPPFATPVWHYLTL--HQHDKTRTELLNDVAGALALDDKLGRST 124
Query: 159 SELTPSEHRRVVIGTQLVK-----DPV--LLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
++L+ E +RV + +++ +P LLLLDEP +LD + +LS+ ++
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQ 182
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 22/178 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
L +S EVR GE+L ++G G+GK LL ++ +SG +G I G P+ +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAGQPLE---AWSATK 70
Query: 103 YVNHRTDLIPSLTVEQTLYYAA----HLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
HR L+ +QT +A +L++ R + V LAL + R+
Sbjct: 71 LALHRA----YLSQQQTPPFATPVWHYLTL--HQHDKTRTELLNDVAGALALDDKLGRST 124
Query: 159 SELTPSEHRRVVIGTQLVK-----DPV--LLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
++L+ E +RV + +++ +P LLLLD+P +LD + +LS+ +++
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQ 182
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 49 EVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRT 108
E + GE++ +LG G GK ++ GEI D ++P+ + Y R
Sbjct: 290 EAKEGEIIGILGPNGIGKTTFARILV--------GEITADEGSVTPE--KQILSYKPQR- 338
Query: 109 DLIPSL--TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEH 166
+ P+ TV+Q L A+ ++ + +V L L + N+++L+ E
Sbjct: 339 -IFPNYDGTVQQYLENASKDALSTSSWFF------EEVTKRLNLHRLLESNVNDLSGGEL 391
Query: 167 RRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTME 219
+++ I L K+ L +LD+P+ LD Y++ + R+ +AV ++
Sbjct: 392 QKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVT-RERKAVTFIID 443
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 12/165 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT---PMSPQLFQ 98
IL++IS + PG+ + +LG GSGK LL R + T GEI +DG ++ + ++
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITLEQWR 93
Query: 99 TTCGYVNHRTDLIPSLTVEQTLY-YAAHLSIGPQVSRYVRNARIRQVLADL--ALSNVAR 155
G + + I S T + L AAH ++ + +R V+ L V
Sbjct: 94 KAFGVIPQKV-FIFSGTFRKNLDPNAAHSD--QEIWKVADEVGLRSVIEQFPGKLDFVLV 150
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200
L+ + + + ++ +LLLDEP+ +LDP+ TY I+
Sbjct: 151 DGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV-TYQII 194
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+L+ I++ + G V+ G G GK LL+ IS +GEII +G P++ +
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-PLKGEIIYNGVPITK--VKGKI 80
Query: 102 GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISEL 161
++ + ++VE L A L G +V++ I L + + ++ ++ + EL
Sbjct: 81 FFLPEEIIVPRKISVEDYLKAVASLY-GVKVNK----NEIMDALESVEVLDL-KKKLGEL 134
Query: 162 TPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEK 220
+ RRV + + L+ + + +LD+P V +D S + ++ + K K ++ + E+
Sbjct: 135 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE 193
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 92/199 (46%), Gaps = 35/199 (17%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ 95
N+Q +L+ ++ + PG+V A++G GSGK + ++ T G+++LDG P
Sbjct: 31 NVQ---VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-PTGGKVLLDGEP---- 82
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLY---YAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
L Q Y++ + + ++ E L+ + +++ G R + ++ A +A+ +
Sbjct: 83 LVQYDHHYLHTQ---VAAVGQEPLLFGRSFRENIAYG-----LTRTPTMEEITA-VAMES 133
Query: 153 VARRNIS---------------ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197
A IS +L+ + + V + L++ P LL+LD+ T LD +
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQL 193
Query: 198 LIVSMLSSYAKRKSRAVLL 216
+ +L + SR VLL
Sbjct: 194 RVQRLLYESPEWASRTVLL 212
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 93/203 (45%), Gaps = 35/203 (17%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ 95
N+Q +L+ ++ + PG+V A++G GSGK + ++ T G+++LDG P
Sbjct: 31 NVQ---VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-PTGGKVLLDGEP---- 82
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLY---YAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
L Q Y++ + + ++ E L+ + +++ G R + ++ A +A+ +
Sbjct: 83 LVQYDHHYLHTQ---VAAVGQEPLLFGRSFRENIAYG-----LTRTPTMEEITA-VAMES 133
Query: 153 VARRNIS---------------ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197
A IS +L+ + + V + L++ P LL+LD T LD +
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQL 193
Query: 198 LIVSMLSSYAKRKSRAVLLTMEK 220
+ +L + SR VLL ++
Sbjct: 194 RVQRLLYESPEWASRTVLLITQQ 216
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 92/209 (44%), Gaps = 31/209 (14%)
Query: 16 IDLQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR 75
I L++ + +G ++R L++I+LEV GE + +LG GSGK LL IS
Sbjct: 2 IQLKNVGITLSGKGYER--------FSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG 52
Query: 76 RSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPS----LTVEQTLYYAAHLSIGPQ 131
+ G I ++G + + Y+ + T+L + +TV +Y L G
Sbjct: 53 LLPYS--GNIFINGMEV-----RKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELK-GLD 104
Query: 132 VSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190
++ ++L L L + RR + +L+ + V L P ++ LDEP N
Sbjct: 105 RDLFL------EMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFEN 158
Query: 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTME 219
+D ++I + Y K +L+T E
Sbjct: 159 VDAARRHVISRYIKEYGK---EGILVTHE 184
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 16/160 (10%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQ 98
+K I L+V G+++ ++G+ G+GK L I+ +G+II +G ++ + + +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-AQKGKIIFNGQDITNKPAHVINR 80
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
V + P LTV + L A+ +R + R + +L + +
Sbjct: 81 XGIALVPEGRRIFPELTVYENLXXGAY-------NRKDKEGIKRDLEWIFSLFPRLKERL 133
Query: 159 SE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194
+ L+ E + + IG L P LL DEP++ L P+
Sbjct: 134 KQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPI 173
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS-------- 93
+LK +SL+ R G+V++++GS GSGK L I+ + G II++G ++
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-PSEGAIIVNGQNINLVRDKDGQ 79
Query: 94 --------PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVL 145
+L +T V +L +TV + + A +G +S++ R + L
Sbjct: 80 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG--LSKHDARERALKYL 137
Query: 146 ADLALSNVAR-RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
A + + A+ + L+ + +RV I L +P +LL DEPT LDP ++ ++
Sbjct: 138 AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQ 197
Query: 205 SYAKRKSRAVLLTME 219
A+ V++T E
Sbjct: 198 QLAEEGKTMVVVTHE 212
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 78/194 (40%), Gaps = 44/194 (22%)
Query: 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGT- 90
G I+ A ISL++ V A++G SGK ++E +++ R G ++ G
Sbjct: 19 GTIKAA---DGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKD 75
Query: 91 -----------------PMSPQLFQT----TCGYVNHRTDLIPSLTVEQTLYYAAHLSIG 129
+ PQ Q T + H D TVE +H +
Sbjct: 76 LLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKD-----TVEAHGVRWSHSELI 130
Query: 130 PQVSRYVRNARI--RQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187
+ S +R R+ VL L +L+ +RV+I L+ DPV+L+LDEP
Sbjct: 131 EKASEKLRMVRLNPEAVLNSYPL---------QLSGGMKQRVLIALALLLDPVVLILDEP 181
Query: 188 TVNLDPLSTYLIVS 201
T LD L+ I+
Sbjct: 182 TSALDVLTQAHIIQ 195
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 92/203 (45%), Gaps = 35/203 (17%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ 95
N+Q +L+ ++ + PG+V A++G GSGK + ++ T G+++LDG P
Sbjct: 31 NVQ---VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-PTGGKVLLDGEP---- 82
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLY---YAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
L Q Y++ + + ++ E L+ + +++ G R + ++ A +A+ +
Sbjct: 83 LVQYDHHYLHTQ---VAAVGQEPLLFGRSFRENIAYG-----LTRTPTMEEITA-VAMES 133
Query: 153 VARRNIS---------------ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197
A IS +L + + V + L++ P LL+LD T LD +
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQL 193
Query: 198 LIVSMLSSYAKRKSRAVLLTMEK 220
+ +L + SR VLL ++
Sbjct: 194 RVQRLLYESPEWASRTVLLITQQ 216
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 37/167 (22%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVI-------------SRRSSGTTRGEIILD 88
+LKDI+ ++ G++LAV GS G+GK +LL +I S R S ++ I+
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 94
Query: 89 GTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL 148
GT +F + +R+ +I + +E+ +S++ I VL +
Sbjct: 95 GTIKENIIFGVSYDEYRYRS-VIKACQLEE------------DISKFAEKDNI--VLGEG 139
Query: 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
++ L+ + R+ + + KD L LLD P LD L+
Sbjct: 140 GIT---------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 177
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 37/167 (22%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVI-------------SRRSSGTTRGEIILD 88
+LKDI+ ++ G++LAV GS G+GK +LL +I S R S ++ I+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 82
Query: 89 GTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL 148
GT +F + +R+ +I + +E+ +S++ I VL +
Sbjct: 83 GTIKENIIFGVSYDEYRYRS-VIKACQLEE------------DISKFAEKDNI--VLGEG 127
Query: 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
++ L+ + R+ + + KD L LLD P LD L+
Sbjct: 128 GIT---------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 28/166 (16%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQT-T 100
+LKDI+ ++ G++LAV GS G+GK +LL +I GE+ P ++ +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMI--------MGEL----EPSEGKIKHSGR 100
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN--- 157
+ + + ++P T+++ + IG Y + I+ + +S A ++
Sbjct: 101 ISFCSQNSWIMPG-TIKENI-------IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 158 ISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
+ E L+ + R+ + + KD L LLD P LD L+ I
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG-TPMSPQLFQTT 100
+LKDI+ ++ G++LAV GS G+GK +LL +I + G+I G Q
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-PSEGKIKHSGRISFCSQFSWIM 111
Query: 101 CGYVNHRTDLIPSLTVEQTLYYA--AHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
G + + ++I ++ ++ Y + + +S++ I VL + ++
Sbjct: 112 PGTI--KENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNI--VLGEGGIT------- 160
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
L+ + R+ + + KD L LLD P LD L+ I
Sbjct: 161 --LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 199
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVI 73
+LK+I+L + GE+LA+ GS GSGK +LL +I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLI 84
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp,
I4122 Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp,
I4122 Space Group
Length = 286
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVI 73
+LK+I+L + GE+LA+ GS GSGK +LL +I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLI 84
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
Length = 285
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVI 73
+LK+I+L + GE+LA+ GS GSGK +LL +I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLI 84
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVI 73
+LK+I+L + GE+LA+ GS GSGK +LL +I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLI 84
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 28/166 (16%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQT-T 100
+LKDI+ ++ G++LAV GS G+GK +LL +I GE+ P ++ +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMI--------MGEL----EPSEGKIKHSGR 100
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN--- 157
+ + + ++P T+++ + IG Y + I+ + +S A ++
Sbjct: 101 ISFCSQNSWIMPG-TIKENI-------IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 152
Query: 158 ISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
+ E L+ + R+ + + KD L LLD P LD L+ I
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVI 73
+LK+I+L + GE+LA+ GS GSGK +LL +I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLI 84
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 37/171 (21%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVI-------------SRRSSGTTRGEIILD 88
+LKDI+ ++ G++LAV GS G+GK +LL +I S R S ++ I+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 89 GTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL 148
GT +F + +R+ +I + +E+ +S++ I VL +
Sbjct: 113 GTIKENIIFGVSYDEYRYRS-VIKACQLEE------------DISKFAEKDNI--VLGEG 157
Query: 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
++ L+ + ++ + + KD L LLD P LD L+ I
Sbjct: 158 GIT---------LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEI 199
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS 78
+++ IL+ +SL+V PGEV A++G GSGK L ++ R
Sbjct: 29 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED 71
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS 78
+++ IL+ +SL+V PGEV A++G GSGK L ++ R
Sbjct: 10 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED 52
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 28/162 (17%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTT- 100
+LKDI+ ++ G++LAV GS G+GK +LL +I GE+ P ++ +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMI--------MGEL----EPSEGKIKHSGR 70
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN--- 157
+ + + ++P T+++ + IG Y + I+ + +S A ++
Sbjct: 71 ISFCSQFSWIMPG-TIKENI-------IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 122
Query: 158 ISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
+ E L+ + R+ + + KD L LLD P LD L+
Sbjct: 123 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 164
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVI 73
+LKDI+ ++ G++LAV GS G+GK +LL +I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMI 84
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 156 RNISELTPSEHRRVVIGTQLVKD--PVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRA 213
R+ L+P E +R+ + TQL + V+ +LDEP+ L P T ++S L + KR +
Sbjct: 375 RSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENL-KRGGNS 433
Query: 214 VLLTMEK----PRSDVLPFLDRTAYLCLGDLIYAGP 245
+ + R+D L + A G+++Y+GP
Sbjct: 434 LFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGP 469
>pdb|2Z0F|A Chain A, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
pdb|2Z0F|B Chain B, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
Length = 524
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 147 DLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
DL +S A+ ++ L+ E V + L +PVL +LD T N +PL +V+ + +
Sbjct: 429 DLPVSPEAKARLARLSAKE----VHPSTLAGEPVLQVLDRATGNGEPLGGIKVVAANAWF 484
Query: 207 AKRKS 211
A R S
Sbjct: 485 AVRPS 489
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 168 RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSD 224
R+ + L + LL+LDEPT LD +++++ Y K+ + +L++ ++ D
Sbjct: 102 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD 158
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 168 RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSD 224
R+ + L + LL+LDEPT LD +++++ Y K+ + +L++ ++ D
Sbjct: 97 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD 153
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 26/168 (15%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTT 100
++L L ++ + G G GK L+ I+ G++ DG P Q
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-------GQV--DGFPT-----QEE 494
Query: 101 CG--YVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRN 157
C YV H D S T L + +G + + I+ L + ++ +
Sbjct: 495 CRTVYVEHDIDGTHSDT--SVLDFVFESGVGTKEA-------IKDKLIEFGFTDEMIAMP 545
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
IS L+ ++ + ++++ +LLLDEPT +LD ++ +V+ L++
Sbjct: 546 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 168 RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSD 224
R+ + L + LL+LDEPT LD +++++ Y K+ + +L++ ++ D
Sbjct: 67 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD 123
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 168 RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSD 224
R+ + L + LL+LDEPT LD +++++ Y K+ + +L++ ++ D
Sbjct: 71 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD 127
>pdb|3SR7|A Chain A, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|B Chain B, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|C Chain C, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|D Chain D, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
Length = 365
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 37 IQTALIL--KDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP 94
IQTA+ L K + + R G A + ++ G R+ L G T +++L+ P+
Sbjct: 223 IQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLN-----QWGQTTAQVLLNAQPLMD 277
Query: 95 QLFQTTCGYVNHRTDLIPSLTV 116
++ G + H D+I +L +
Sbjct: 278 KVEILASGGIRHPLDIIKALVL 299
>pdb|1CLI|A Chain A, X-Ray Crystal Structure Of Aminoimidazole Ribonucleotide
Synthetase (Purm), From The E. Coli Purine Biosynthetic
Pathway, At 2.5 A Resolution
pdb|1CLI|B Chain B, X-Ray Crystal Structure Of Aminoimidazole Ribonucleotide
Synthetase (Purm), From The E. Coli Purine Biosynthetic
Pathway, At 2.5 A Resolution
pdb|1CLI|C Chain C, X-Ray Crystal Structure Of Aminoimidazole Ribonucleotide
Synthetase (Purm), From The E. Coli Purine Biosynthetic
Pathway, At 2.5 A Resolution
pdb|1CLI|D Chain D, X-Ray Crystal Structure Of Aminoimidazole Ribonucleotide
Synthetase (Purm), From The E. Coli Purine Biosynthetic
Pathway, At 2.5 A Resolution
Length = 345
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 49 EVRPGEVLAVLGSKG------SGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
+V G+VL LGS G S R +LEV SG LDG P++ L T
Sbjct: 174 KVSDGDVLIALGSSGPHSNGYSLVRKILEV-----SGCDPQTTELDGKPLADHLLAPTRI 228
Query: 103 YVNHRTDLIPSLTVEQTLYYAAHLSIG 129
YV +LI + V + AHL+ G
Sbjct: 229 YVKSVLELIEKVDV----HAIAHLTGG 251
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 24/167 (14%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTT 100
++L L ++ + G G GK L I+ G++ DG P Q
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIAN-------GQV--DGFPT-----QEE 494
Query: 101 CG--YVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
C YV H D S T L + +G + +++ I D ++ I
Sbjct: 495 CRTVYVEHDIDGTHSDT--SVLDFVFESGVGTK--EAIKDKLIEFGFTDEXIA----XPI 546
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
S L+ ++ + ++++ +LLLDEPT +LD ++ +V+ L++
Sbjct: 547 SALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 24/167 (14%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTT 100
++L L ++ + G G GK L I+ G++ DG P Q
Sbjct: 443 ILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIAN-------GQV--DGFPT-----QEE 488
Query: 101 CG--YVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
C YV H D S T L + +G +++ I D ++ I
Sbjct: 489 CRTVYVEHDIDGTHSDT--SVLDFVFESGVG--TKEAIKDKLIEFGFTDEXIA----XPI 540
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
S L+ ++ + ++++ +LLLDEPT +LD ++ +V+ L++
Sbjct: 541 SALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 587
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 34/66 (51%)
Query: 168 RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLP 227
R+ + L + LL+LDEPT LD +++++ Y K+ + +L++ ++ D
Sbjct: 262 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD 321
Query: 228 FLDRTA 233
+ R +
Sbjct: 322 HVIRIS 327
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 143 QVLADLALSNVA-RRNISELTPSEHRRVVIGTQLVKD--PVLLLLDEPTVNLDPLSTYLI 199
+ L D+ L + R+ + L+ E +R+ + TQ+ V+ +LDEPT+ L P T +
Sbjct: 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERL 505
Query: 200 VSMLSS 205
+ L
Sbjct: 506 IKTLKK 511
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 34/66 (51%)
Query: 168 RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLP 227
R+ + L + LL+LDEPT LD +++++ Y K+ + +L++ ++ D
Sbjct: 282 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD 341
Query: 228 FLDRTA 233
+ R +
Sbjct: 342 HVIRIS 347
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,896,622
Number of Sequences: 62578
Number of extensions: 667259
Number of successful extensions: 1761
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1596
Number of HSP's gapped (non-prelim): 136
length of query: 606
length of database: 14,973,337
effective HSP length: 104
effective length of query: 502
effective length of database: 8,465,225
effective search space: 4249542950
effective search space used: 4249542950
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)