Query psy10223
Match_columns 606
No_of_seqs 559 out of 3076
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 21:02:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00956 3a01205 Pleiotropic 100.0 1.1E-93 2.3E-98 870.4 49.2 542 38-602 72-685 (1394)
2 KOG0065|consensus 100.0 2.9E-93 6.2E-98 817.6 32.9 538 39-602 127-721 (1391)
3 KOG0061|consensus 100.0 3E-88 6.5E-93 763.1 51.8 519 38-603 41-600 (613)
4 TIGR00955 3a01204 The Eye Pigm 100.0 3.8E-87 8.3E-92 759.9 54.1 519 38-603 36-605 (617)
5 PLN03140 ABC transporter G fam 100.0 3.6E-87 7.9E-92 811.0 48.7 518 38-602 176-780 (1470)
6 PLN03211 ABC transporter G-25; 100.0 2.8E-85 6.1E-90 745.9 57.0 498 9-511 35-597 (659)
7 PLN03140 ABC transporter G fam 100.0 2.1E-83 4.4E-88 778.3 56.3 540 13-603 867-1458(1470)
8 TIGR00956 3a01205 Pleiotropic 100.0 2.1E-81 4.5E-86 762.9 56.4 541 39-602 775-1382(1394)
9 KOG0065|consensus 100.0 7.1E-81 1.5E-85 715.5 30.1 527 38-591 802-1390(1391)
10 COG1126 GlnQ ABC-type polar am 100.0 1.3E-51 2.8E-56 395.6 22.2 208 37-249 12-223 (240)
11 COG1131 CcmA ABC-type multidru 100.0 1.1E-48 2.3E-53 406.0 25.9 214 36-254 13-229 (293)
12 COG1127 Ttg2A ABC-type transpo 100.0 4.6E-48 1E-52 376.4 23.5 212 36-251 17-235 (263)
13 COG1135 AbcC ABC-type metal io 100.0 2.4E-48 5.2E-53 390.4 21.7 207 39-250 18-230 (339)
14 COG1125 OpuBA ABC-type proline 100.0 7.9E-48 1.7E-52 376.3 22.0 217 30-251 4-225 (309)
15 COG1120 FepC ABC-type cobalami 100.0 1.5E-47 3.3E-52 384.1 20.9 214 36-251 11-228 (258)
16 COG1136 SalX ABC-type antimicr 100.0 8.3E-47 1.8E-51 371.8 25.1 195 40-240 18-220 (226)
17 COG1116 TauB ABC-type nitrate/ 100.0 5.7E-47 1.2E-51 373.4 22.7 193 39-238 15-207 (248)
18 COG3638 ABC-type phosphate/pho 100.0 4.4E-47 9.4E-52 368.6 19.9 214 38-253 15-239 (258)
19 COG3839 MalK ABC-type sugar tr 100.0 1.1E-46 2.4E-51 391.3 23.7 205 42-251 18-223 (338)
20 COG3842 PotA ABC-type spermidi 100.0 9.9E-47 2.2E-51 393.6 21.3 211 36-250 14-225 (352)
21 COG1118 CysA ABC-type sulfate/ 100.0 9.7E-47 2.1E-51 378.0 20.3 211 38-251 13-227 (345)
22 COG4555 NatA ABC-type Na+ tran 100.0 1.4E-46 3E-51 356.2 17.5 205 41-251 16-222 (245)
23 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.2E-45 4.8E-50 366.7 24.6 205 41-251 18-227 (254)
24 PRK11650 ugpC glycerol-3-phosp 100.0 6.9E-45 1.5E-49 387.1 27.4 207 39-250 16-223 (356)
25 TIGR03265 PhnT2 putative 2-ami 100.0 9.3E-45 2E-49 385.7 27.4 208 39-251 16-224 (353)
26 PRK13537 nodulation ABC transp 100.0 9.6E-45 2.1E-49 379.2 26.9 207 39-251 19-227 (306)
27 cd03261 ABC_Org_Solvent_Resist 100.0 1.4E-44 3E-49 364.2 26.4 208 39-250 12-225 (235)
28 TIGR02314 ABC_MetN D-methionin 100.0 2.3E-44 5.1E-49 380.5 27.7 206 40-250 18-229 (343)
29 PRK11432 fbpC ferric transport 100.0 2.1E-44 4.7E-49 382.4 27.4 207 39-250 18-225 (351)
30 TIGR03258 PhnT 2-aminoethylpho 100.0 4.4E-44 9.6E-49 381.2 27.3 208 39-251 17-228 (362)
31 TIGR01188 drrA daunorubicin re 100.0 3.5E-44 7.6E-49 374.6 26.0 207 39-251 5-213 (302)
32 COG3840 ThiQ ABC-type thiamine 100.0 7.3E-45 1.6E-49 339.2 18.3 202 44-250 16-218 (231)
33 COG2884 FtsE Predicted ATPase 100.0 1.3E-44 2.9E-49 340.0 20.1 199 40-244 15-219 (223)
34 PRK13536 nodulation factor exp 100.0 9E-44 2E-48 376.3 29.0 208 38-251 52-261 (340)
35 PRK10851 sulfate/thiosulfate t 100.0 6.5E-44 1.4E-48 379.2 27.7 210 39-250 14-225 (353)
36 PRK09452 potA putrescine/sperm 100.0 8.1E-44 1.8E-48 380.6 27.6 207 39-250 26-233 (375)
37 COG1122 CbiO ABC-type cobalt t 100.0 3.5E-44 7.7E-49 358.8 22.9 207 40-251 17-228 (235)
38 cd03259 ABC_Carb_Solutes_like 100.0 8.5E-44 1.8E-48 353.1 25.3 201 39-244 12-213 (213)
39 PRK11607 potG putrescine trans 100.0 1.1E-43 2.3E-48 380.2 27.8 208 39-251 31-239 (377)
40 TIGR01186 proV glycine betaine 100.0 1.2E-43 2.6E-48 377.2 27.6 209 38-251 4-219 (363)
41 cd03265 ABC_DrrA DrrA is the A 100.0 1.5E-43 3.2E-48 353.2 26.0 206 39-249 12-219 (220)
42 COG1124 DppF ABC-type dipeptid 100.0 4.3E-44 9.4E-49 350.1 21.6 204 41-251 21-231 (252)
43 PRK11000 maltose/maltodextrin 100.0 2.4E-43 5.2E-48 377.4 27.8 207 39-250 15-222 (369)
44 cd03296 ABC_CysA_sulfate_impor 100.0 3.1E-43 6.8E-48 355.3 27.0 209 39-249 14-224 (239)
45 cd03301 ABC_MalK_N The N-termi 100.0 3.6E-43 7.8E-48 348.5 25.9 201 39-244 12-213 (213)
46 cd03293 ABC_NrtD_SsuB_transpor 100.0 5.4E-43 1.2E-47 349.2 27.0 201 40-247 17-219 (220)
47 PRK11153 metN DL-methionine tr 100.0 3.7E-43 8E-48 372.8 27.4 207 39-250 17-229 (343)
48 cd03256 ABC_PhnC_transporter A 100.0 3.1E-43 6.6E-48 355.3 25.4 209 40-250 14-233 (241)
49 cd03219 ABC_Mj1267_LivG_branch 100.0 4E-43 8.6E-48 353.6 25.9 209 39-250 12-231 (236)
50 TIGR01288 nodI ATP-binding ABC 100.0 4.8E-43 1E-47 366.2 26.9 207 39-251 16-224 (303)
51 TIGR03522 GldA_ABC_ATP gliding 100.0 6.1E-43 1.3E-47 365.0 27.0 206 39-251 14-221 (301)
52 cd03258 ABC_MetN_methionine_tr 100.0 5.2E-43 1.1E-47 352.2 25.4 205 41-250 19-229 (233)
53 COG0410 LivF ABC-type branched 100.0 3.2E-43 7E-48 341.8 22.8 210 36-251 12-226 (237)
54 COG1137 YhbG ABC-type (unclass 100.0 2.2E-44 4.7E-49 340.9 14.0 213 35-251 12-228 (243)
55 cd03218 ABC_YhbG The ABC trans 100.0 7.3E-43 1.6E-47 350.7 26.0 207 38-250 11-221 (232)
56 PRK13637 cbiO cobalt transport 100.0 1.4E-42 3E-47 360.1 28.5 217 40-261 20-247 (287)
57 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.1E-42 2.3E-47 352.1 26.7 206 40-250 14-224 (242)
58 COG0411 LivG ABC-type branched 100.0 1.4E-43 3.1E-48 346.8 19.5 216 31-251 11-239 (250)
59 cd03263 ABC_subfamily_A The AB 100.0 6.6E-43 1.4E-47 348.3 24.3 203 40-249 15-219 (220)
60 COG1117 PstB ABC-type phosphat 100.0 1.1E-43 2.3E-48 339.6 17.7 206 38-250 18-236 (253)
61 cd03269 ABC_putative_ATPase Th 100.0 8.2E-43 1.8E-47 345.3 24.6 199 39-244 12-210 (210)
62 TIGR02315 ABC_phnC phosphonate 100.0 5.3E-43 1.2E-47 354.2 23.6 209 39-249 14-233 (243)
63 cd03294 ABC_Pro_Gly_Bertaine T 100.0 9.9E-43 2.2E-47 357.9 26.0 211 35-250 32-249 (269)
64 cd03234 ABCG_White The White s 100.0 1.5E-42 3.3E-47 347.4 26.0 205 39-244 19-226 (226)
65 TIGR00960 3a0501s02 Type II (G 100.0 8.3E-43 1.8E-47 346.7 23.8 195 40-240 16-216 (216)
66 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 9.4E-43 2E-47 346.7 24.0 195 40-240 17-218 (218)
67 PRK15079 oligopeptide ABC tran 100.0 2.9E-42 6.4E-47 363.7 28.9 208 40-250 34-250 (331)
68 PRK09493 glnQ glutamine ABC tr 100.0 2E-42 4.4E-47 349.5 26.5 207 39-250 13-224 (240)
69 PRK13650 cbiO cobalt transport 100.0 2.2E-42 4.7E-47 357.2 27.2 214 40-259 20-240 (279)
70 PRK13634 cbiO cobalt transport 100.0 2.3E-42 4.9E-47 358.9 27.5 216 40-261 20-248 (290)
71 cd03260 ABC_PstB_phosphate_tra 100.0 1.2E-42 2.5E-47 348.2 24.2 203 39-248 12-226 (227)
72 cd03266 ABC_NatA_sodium_export 100.0 1.8E-42 3.8E-47 344.7 24.6 198 41-244 19-218 (218)
73 cd03224 ABC_TM1139_LivF_branch 100.0 2.1E-42 4.6E-47 345.0 25.1 204 39-250 12-220 (222)
74 PRK11831 putative ABC transpor 100.0 2.9E-42 6.3E-47 354.4 26.6 208 39-250 19-232 (269)
75 PRK13647 cbiO cobalt transport 100.0 4.2E-42 9.1E-47 354.2 27.5 215 40-260 18-238 (274)
76 PRK13636 cbiO cobalt transport 100.0 5.2E-42 1.1E-46 355.1 28.1 207 40-251 19-231 (283)
77 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 5.5E-42 1.2E-46 345.6 27.5 207 39-251 13-221 (236)
78 PRK09536 btuD corrinoid ABC tr 100.0 2E-42 4.2E-47 372.2 25.7 210 38-250 14-227 (402)
79 PRK11264 putative amino-acid A 100.0 3E-42 6.5E-47 350.3 25.7 207 39-250 15-232 (250)
80 PRK13643 cbiO cobalt transport 100.0 5E-42 1.1E-46 356.0 27.6 218 40-264 19-249 (288)
81 PRK11629 lolD lipoprotein tran 100.0 6.1E-42 1.3E-46 344.6 27.1 201 40-246 22-229 (233)
82 cd03226 ABC_cobalt_CbiO_domain 100.0 1.1E-42 2.4E-47 343.3 21.1 192 40-241 13-205 (205)
83 cd03268 ABC_BcrA_bacitracin_re 100.0 2.4E-42 5.1E-47 341.5 23.6 196 39-244 12-208 (208)
84 PRK11300 livG leucine/isoleuci 100.0 6.3E-42 1.4E-46 348.9 27.1 210 39-250 17-242 (255)
85 COG4152 ABC-type uncharacteriz 100.0 6.8E-43 1.5E-47 339.6 18.5 212 35-253 10-221 (300)
86 PRK10575 iron-hydroxamate tran 100.0 7.2E-42 1.6E-46 350.7 26.3 209 40-250 24-236 (265)
87 TIGR03005 ectoine_ehuA ectoine 100.0 9.4E-42 2E-46 347.2 26.7 208 39-250 12-235 (252)
88 PRK11248 tauB taurine transpor 100.0 1.1E-41 2.5E-46 347.4 26.9 202 39-247 13-216 (255)
89 PRK10895 lipopolysaccharide AB 100.0 8.5E-42 1.8E-46 345.2 25.5 207 39-250 15-225 (241)
90 PRK10070 glycine betaine trans 100.0 9E-42 2E-46 366.9 27.2 208 38-250 39-253 (400)
91 TIGR00972 3a0107s01c2 phosphat 100.0 1.2E-41 2.6E-46 345.5 26.6 205 39-250 13-231 (247)
92 TIGR02673 FtsE cell division A 100.0 7.4E-42 1.6E-46 339.3 24.1 194 40-239 15-214 (214)
93 PRK10619 histidine/lysine/argi 100.0 1.5E-41 3.3E-46 346.7 27.0 207 39-250 17-240 (257)
94 PRK13646 cbiO cobalt transport 100.0 9.5E-42 2.1E-46 353.6 25.8 206 40-251 20-235 (286)
95 cd03292 ABC_FtsE_transporter F 100.0 7.6E-42 1.6E-46 339.1 24.0 195 40-240 14-214 (214)
96 PRK13548 hmuV hemin importer A 100.0 1.3E-41 2.8E-46 347.6 26.1 207 39-250 14-229 (258)
97 cd03257 ABC_NikE_OppD_transpor 100.0 1.2E-41 2.5E-46 340.8 25.3 200 41-244 19-228 (228)
98 PRK13635 cbiO cobalt transport 100.0 1.7E-41 3.6E-46 350.6 27.1 215 40-260 20-241 (279)
99 TIGR02211 LolD_lipo_ex lipopro 100.0 1.4E-41 3.1E-46 338.9 25.4 196 40-241 18-220 (221)
100 PRK11614 livF leucine/isoleuci 100.0 1.1E-41 2.5E-46 343.4 24.9 204 39-250 17-225 (237)
101 cd03264 ABC_drug_resistance_li 100.0 8.1E-42 1.8E-46 338.4 23.4 198 39-244 12-211 (211)
102 cd03225 ABC_cobalt_CbiO_domain 100.0 8.5E-42 1.8E-46 338.1 23.3 194 40-239 14-211 (211)
103 PRK13652 cbiO cobalt transport 100.0 1.9E-41 4.2E-46 349.8 26.7 207 40-251 17-227 (277)
104 PRK13651 cobalt transporter AT 100.0 2.3E-41 5E-46 353.4 27.4 204 41-250 21-253 (305)
105 PRK11308 dppF dipeptide transp 100.0 2.6E-41 5.6E-46 356.1 28.0 208 40-251 28-244 (327)
106 PRK11247 ssuB aliphatic sulfon 100.0 1.2E-41 2.6E-46 347.3 24.7 196 39-247 24-219 (257)
107 cd03262 ABC_HisP_GlnQ_permease 100.0 1.1E-41 2.3E-46 337.8 23.6 197 39-240 12-213 (213)
108 TIGR03411 urea_trans_UrtD urea 100.0 2.2E-41 4.7E-46 342.3 26.2 208 39-250 14-230 (242)
109 PRK10253 iron-enterobactin tra 100.0 1.9E-41 4E-46 347.7 25.7 210 39-250 19-232 (265)
110 TIGR03415 ABC_choXWV_ATP choli 100.0 1.6E-41 3.4E-46 362.6 26.2 210 36-250 33-253 (382)
111 PRK11124 artP arginine transpo 100.0 1.9E-41 4.2E-46 342.8 25.4 205 39-249 14-228 (242)
112 PRK13648 cbiO cobalt transport 100.0 3.4E-41 7.4E-46 346.5 27.6 216 40-261 22-244 (269)
113 PRK13641 cbiO cobalt transport 100.0 2E-41 4.4E-46 351.3 26.0 204 40-250 20-233 (287)
114 PRK14247 phosphate ABC transpo 100.0 3.1E-41 6.6E-46 343.0 26.8 208 39-250 15-233 (250)
115 PRK13631 cbiO cobalt transport 100.0 2.1E-41 4.6E-46 355.8 26.3 215 40-261 39-278 (320)
116 PRK10584 putative ABC transpor 100.0 4.5E-41 9.8E-46 337.0 27.4 197 40-242 23-226 (228)
117 PRK10908 cell division protein 100.0 2.6E-41 5.7E-46 337.5 25.2 197 40-242 15-217 (222)
118 TIGR02142 modC_ABC molybdenum 100.0 2.6E-41 5.5E-46 360.3 26.6 200 45-251 15-221 (354)
119 PRK14268 phosphate ABC transpo 100.0 3.5E-41 7.5E-46 344.3 26.4 205 39-250 24-241 (258)
120 PRK11022 dppD dipeptide transp 100.0 4.5E-41 9.7E-46 354.3 28.0 209 40-251 20-243 (326)
121 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.2E-41 4.7E-46 335.3 24.1 195 45-244 16-211 (211)
122 cd03235 ABC_Metallic_Cations A 100.0 1.2E-41 2.5E-46 337.7 22.0 200 39-244 11-213 (213)
123 TIGR03410 urea_trans_UrtE urea 100.0 1.9E-41 4.2E-46 340.1 23.6 203 39-249 12-219 (230)
124 PRK13638 cbiO cobalt transport 100.0 4.4E-41 9.6E-46 346.0 26.5 206 39-250 13-224 (271)
125 PRK13649 cbiO cobalt transport 100.0 6.3E-41 1.4E-45 346.4 27.6 204 40-250 20-233 (280)
126 cd03267 ABC_NatA_like Similar 100.0 4.1E-41 8.8E-46 339.4 25.5 203 37-244 31-236 (236)
127 TIGR01184 ntrCD nitrate transp 100.0 2.4E-41 5.1E-46 339.9 23.6 201 43-248 1-201 (230)
128 cd03300 ABC_PotA_N PotA is an 100.0 6.9E-41 1.5E-45 336.8 26.8 207 39-250 12-219 (232)
129 TIGR00968 3a0106s01 sulfate AB 100.0 7.2E-41 1.6E-45 337.8 26.8 207 39-250 12-219 (237)
130 PRK13632 cbiO cobalt transport 100.0 4.7E-41 1E-45 345.9 25.9 206 39-250 21-230 (271)
131 TIGR02769 nickel_nikE nickel i 100.0 4.8E-41 1.1E-45 344.6 25.9 208 39-250 23-239 (265)
132 PRK14267 phosphate ABC transpo 100.0 6.2E-41 1.3E-45 341.3 26.4 207 40-250 17-236 (253)
133 PRK13644 cbiO cobalt transport 100.0 4.4E-41 9.5E-46 346.6 25.5 204 40-250 15-223 (274)
134 PRK09984 phosphonate/organopho 100.0 4.4E-41 9.6E-46 344.3 25.3 210 39-249 16-240 (262)
135 TIGR01978 sufC FeS assembly AT 100.0 7.1E-41 1.5E-45 338.5 26.4 210 39-250 12-233 (243)
136 PRK10771 thiQ thiamine transpo 100.0 5.3E-41 1.1E-45 337.6 25.2 202 44-250 16-218 (232)
137 cd03299 ABC_ModC_like Archeal 100.0 9.3E-41 2E-45 336.6 27.0 204 42-250 14-218 (235)
138 PRK11144 modC molybdate transp 100.0 4.7E-41 1E-45 357.9 26.0 196 45-251 16-218 (352)
139 PRK11231 fecE iron-dicitrate t 100.0 4.5E-41 9.8E-46 342.9 24.7 208 39-249 14-225 (255)
140 PRK13639 cbiO cobalt transport 100.0 9.7E-41 2.1E-45 344.2 27.4 205 40-250 15-225 (275)
141 TIGR01277 thiQ thiamine ABC tr 100.0 8.5E-41 1.8E-45 331.8 25.6 199 42-245 13-212 (213)
142 TIGR03873 F420-0_ABC_ATP propo 100.0 6.5E-41 1.4E-45 341.9 25.4 208 39-249 13-224 (256)
143 cd03297 ABC_ModC_molybdenum_tr 100.0 6.8E-41 1.5E-45 332.6 24.8 197 38-244 11-214 (214)
144 PRK13640 cbiO cobalt transport 100.0 1.1E-40 2.4E-45 344.9 27.2 206 40-251 20-232 (282)
145 PRK14273 phosphate ABC transpo 100.0 8.8E-41 1.9E-45 340.5 26.0 205 40-250 20-237 (254)
146 TIGR02770 nickel_nikD nickel i 100.0 6.1E-41 1.3E-45 336.8 24.5 204 42-250 1-214 (230)
147 TIGR03740 galliderm_ABC gallid 100.0 9.3E-41 2E-45 333.7 25.7 199 39-248 12-210 (223)
148 PRK15112 antimicrobial peptide 100.0 8.3E-41 1.8E-45 343.3 25.8 207 40-250 26-238 (267)
149 PRK14250 phosphate ABC transpo 100.0 7E-41 1.5E-45 338.7 24.7 202 39-250 15-220 (241)
150 PRK13633 cobalt transporter AT 100.0 1.4E-40 3E-45 343.9 27.3 206 40-251 23-233 (280)
151 PRK09473 oppD oligopeptide tra 100.0 1.5E-40 3.2E-45 350.8 28.0 209 40-251 29-251 (330)
152 PRK14242 phosphate transporter 100.0 1.2E-40 2.6E-45 339.1 26.5 205 39-249 18-235 (253)
153 PRK14241 phosphate transporter 100.0 1.7E-40 3.7E-45 339.2 27.0 207 39-250 16-241 (258)
154 PRK10744 pstB phosphate transp 100.0 1.8E-40 4E-45 339.4 27.3 206 39-250 25-243 (260)
155 PRK13645 cbiO cobalt transport 100.0 1E-40 2.3E-45 346.4 25.8 204 41-250 25-239 (289)
156 PRK15093 antimicrobial peptide 100.0 1.8E-40 3.9E-45 350.6 27.5 211 39-250 19-247 (330)
157 PRK14269 phosphate ABC transpo 100.0 1.7E-40 3.7E-45 336.8 26.2 207 39-250 14-229 (246)
158 PRK13642 cbiO cobalt transport 100.0 2.6E-40 5.6E-45 341.4 27.8 205 40-250 20-228 (277)
159 PRK14235 phosphate transporter 100.0 2.4E-40 5.3E-45 339.8 27.1 207 39-250 31-250 (267)
160 PRK14259 phosphate ABC transpo 100.0 2.3E-40 5E-45 340.4 26.6 205 39-251 25-253 (269)
161 COG0444 DppD ABC-type dipeptid 100.0 1.7E-40 3.7E-45 338.1 24.9 210 39-251 17-243 (316)
162 COG4175 ProV ABC-type proline/ 100.0 3.1E-41 6.7E-46 338.6 18.4 207 40-251 41-254 (386)
163 PRK14245 phosphate ABC transpo 100.0 3.3E-40 7.2E-45 335.4 26.4 206 39-250 15-233 (250)
164 PRK13547 hmuV hemin importer A 100.0 1.9E-40 4.1E-45 341.3 24.6 210 39-250 13-243 (272)
165 PRK14237 phosphate transporter 100.0 6.4E-40 1.4E-44 336.7 28.0 206 39-250 32-250 (267)
166 cd03233 ABC_PDR_domain1 The pl 100.0 3.4E-40 7.4E-45 325.1 24.4 180 39-244 19-202 (202)
167 PRK14270 phosphate ABC transpo 100.0 4.6E-40 1E-44 334.6 26.2 206 39-250 16-234 (251)
168 PRK14256 phosphate ABC transpo 100.0 6.3E-40 1.4E-44 333.8 27.1 207 39-250 16-235 (252)
169 PRK11701 phnK phosphonate C-P 100.0 5.2E-40 1.1E-44 335.6 26.5 207 40-250 19-240 (258)
170 COG4181 Predicted ABC-type tra 100.0 7E-41 1.5E-45 309.6 17.9 199 38-242 21-226 (228)
171 PRK14275 phosphate ABC transpo 100.0 8.7E-40 1.9E-44 338.9 28.1 206 39-250 51-269 (286)
172 TIGR03608 L_ocin_972_ABC putat 100.0 2.7E-40 5.8E-45 326.1 23.2 190 39-235 10-206 (206)
173 PRK14274 phosphate ABC transpo 100.0 6E-40 1.3E-44 335.4 26.4 206 39-250 24-242 (259)
174 PRK14239 phosphate transporter 100.0 7.5E-40 1.6E-44 333.1 26.7 206 39-250 17-235 (252)
175 PRK10418 nikD nickel transport 100.0 5E-40 1.1E-44 335.0 25.3 204 40-250 16-229 (254)
176 PRK14244 phosphate ABC transpo 100.0 6.3E-40 1.4E-44 333.6 25.9 207 39-250 17-236 (251)
177 PRK14248 phosphate ABC transpo 100.0 1.1E-39 2.3E-44 335.2 27.6 206 39-250 33-251 (268)
178 TIGR02982 heterocyst_DevA ABC 100.0 5.6E-40 1.2E-44 327.5 24.5 196 40-240 18-219 (220)
179 PRK13549 xylose transporter AT 100.0 2.5E-40 5.5E-45 368.9 24.5 209 39-249 17-230 (506)
180 PRK14262 phosphate ABC transpo 100.0 9.5E-40 2.1E-44 332.0 26.5 206 39-250 15-233 (250)
181 PRK14240 phosphate transporter 100.0 1.2E-39 2.5E-44 331.4 26.9 206 39-250 15-233 (250)
182 PRK14272 phosphate ABC transpo 100.0 1.2E-39 2.5E-44 331.7 26.7 207 39-250 16-235 (252)
183 PRK14253 phosphate ABC transpo 100.0 1E-39 2.3E-44 331.5 25.9 205 39-249 15-231 (249)
184 PRK14258 phosphate ABC transpo 100.0 1.4E-39 3E-44 333.1 26.8 206 40-250 20-244 (261)
185 PRK14236 phosphate transporter 100.0 1.7E-39 3.6E-44 334.5 26.8 206 39-250 37-255 (272)
186 PRK10762 D-ribose transporter 100.0 4.9E-40 1.1E-44 366.2 24.6 208 39-249 16-228 (501)
187 PRK10419 nikE nickel transport 100.0 1.3E-39 2.8E-44 334.7 25.8 208 39-250 24-240 (268)
188 PRK14260 phosphate ABC transpo 100.0 1.6E-39 3.4E-44 332.3 26.1 206 39-250 19-242 (259)
189 CHL00131 ycf16 sulfate ABC tra 100.0 2.9E-39 6.3E-44 328.8 27.7 208 40-249 20-239 (252)
190 PRK14251 phosphate ABC transpo 100.0 1.9E-39 4.1E-44 330.0 26.3 206 39-250 16-234 (251)
191 cd03252 ABCC_Hemolysin The ABC 100.0 3.4E-40 7.3E-45 332.6 20.4 201 40-251 15-225 (237)
192 PRK09700 D-allose transporter 100.0 7.1E-40 1.5E-44 365.7 24.9 208 39-249 17-232 (510)
193 TIGR02323 CP_lyasePhnK phospho 100.0 1.8E-39 4E-44 330.5 25.3 208 39-250 15-237 (253)
194 PRK14271 phosphate ABC transpo 100.0 2.7E-39 5.8E-44 333.6 26.7 208 37-250 31-250 (276)
195 PRK14249 phosphate ABC transpo 100.0 3E-39 6.6E-44 328.6 26.5 205 39-250 16-234 (251)
196 PRK14261 phosphate ABC transpo 100.0 3.3E-39 7.1E-44 328.7 26.3 206 39-250 18-236 (253)
197 PRK14243 phosphate transporter 100.0 3.8E-39 8.3E-44 330.4 26.8 203 40-250 23-247 (264)
198 PRK14238 phosphate transporter 100.0 4.5E-39 9.8E-44 331.1 27.3 207 38-250 35-254 (271)
199 PRK15439 autoinducer 2 ABC tra 100.0 1.4E-39 3E-44 363.2 25.2 202 39-250 23-228 (510)
200 PRK03695 vitamin B12-transport 100.0 2E-39 4.3E-44 329.6 23.8 200 42-249 11-220 (248)
201 PRK14254 phosphate ABC transpo 100.0 4.3E-39 9.4E-44 333.5 26.8 205 38-250 50-268 (285)
202 COG4525 TauB ABC-type taurine 100.0 1E-39 2.2E-44 307.7 19.8 206 40-252 18-225 (259)
203 PRK14266 phosphate ABC transpo 100.0 6.5E-39 1.4E-43 325.9 27.1 206 39-250 15-233 (250)
204 PRK14255 phosphate ABC transpo 100.0 6.5E-39 1.4E-43 326.3 26.9 206 39-250 17-235 (252)
205 PRK14246 phosphate ABC transpo 100.0 5.1E-39 1.1E-43 328.2 26.2 209 36-250 19-240 (257)
206 PRK10982 galactose/methyl gala 100.0 1.7E-39 3.6E-44 361.2 24.5 208 39-249 10-221 (491)
207 PRK10247 putative ABC transpor 100.0 2.2E-39 4.7E-44 324.5 23.0 198 39-245 19-221 (225)
208 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 6.6E-40 1.4E-44 330.7 19.4 202 40-252 16-227 (238)
209 PRK14263 phosphate ABC transpo 100.0 6.7E-39 1.5E-43 328.1 26.8 205 38-250 19-244 (261)
210 cd03251 ABCC_MsbA MsbA is an e 100.0 8.1E-40 1.8E-44 329.1 19.7 201 40-251 15-225 (234)
211 PRK14265 phosphate ABC transpo 100.0 8.1E-39 1.7E-43 329.7 27.5 204 39-250 32-257 (274)
212 PRK10261 glutathione transport 100.0 3.3E-39 7.2E-44 367.7 27.0 207 40-250 337-552 (623)
213 COG4559 ABC-type hemin transpo 100.0 6.9E-40 1.5E-44 312.9 17.6 210 38-251 12-230 (259)
214 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4.2E-39 9.2E-44 322.3 23.6 194 36-244 31-224 (224)
215 TIGR01257 rim_protein retinal- 100.0 4.5E-39 9.7E-44 394.1 28.5 209 40-254 1952-2162(2272)
216 PRK15056 manganese/iron transp 100.0 5.4E-39 1.2E-43 330.7 24.6 206 40-249 20-228 (272)
217 cd03213 ABCG_EPDR ABCG transpo 100.0 4.7E-39 1E-43 314.9 22.9 171 40-244 22-194 (194)
218 COG4598 HisP ABC-type histidin 100.0 4.9E-40 1.1E-44 306.0 15.0 210 36-250 15-240 (256)
219 TIGR03269 met_CoM_red_A2 methy 100.0 6.2E-39 1.3E-43 359.0 26.8 210 39-252 12-259 (520)
220 PRK13543 cytochrome c biogenes 100.0 8.3E-39 1.8E-43 317.9 24.4 190 39-237 23-212 (214)
221 COG1123 ATPase components of v 100.0 6E-39 1.3E-43 348.3 25.3 209 40-251 22-244 (539)
222 PRK13538 cytochrome c biogenes 100.0 8.1E-39 1.8E-43 315.6 23.4 188 39-235 13-202 (204)
223 cd03232 ABC_PDR_domain2 The pl 100.0 7.4E-39 1.6E-43 313.0 22.6 171 40-244 20-192 (192)
224 PRK11288 araG L-arabinose tran 100.0 6.4E-39 1.4E-43 357.2 25.2 205 39-246 16-224 (501)
225 cd03254 ABCC_Glucan_exporter_l 100.0 2.7E-39 5.8E-44 324.2 19.6 201 40-251 16-226 (229)
226 TIGR02633 xylG D-xylose ABC tr 100.0 7.8E-39 1.7E-43 356.5 25.4 209 39-249 13-228 (500)
227 COG1123 ATPase components of v 100.0 6.2E-39 1.3E-43 348.3 23.6 208 39-250 303-518 (539)
228 TIGR03269 met_CoM_red_A2 methy 100.0 1.1E-38 2.5E-43 356.9 26.0 206 40-251 297-517 (520)
229 PRK10261 glutathione transport 100.0 1.1E-38 2.5E-43 363.3 26.4 207 40-250 29-257 (623)
230 cd03245 ABCC_bacteriocin_expor 100.0 5.3E-39 1.2E-43 320.2 20.3 190 40-244 17-220 (220)
231 PRK15134 microcin C ABC transp 100.0 1.1E-38 2.5E-43 357.5 25.3 207 40-250 299-514 (529)
232 cd03231 ABC_CcmA_heme_exporter 100.0 1.4E-38 3E-43 313.2 22.5 185 39-235 12-198 (201)
233 TIGR01166 cbiO cobalt transpor 100.0 1.1E-38 2.5E-43 310.9 21.7 178 39-221 4-187 (190)
234 COG4148 ModC ABC-type molybdat 100.0 1E-39 2.2E-44 322.7 14.3 196 45-251 16-218 (352)
235 cd03253 ABCC_ATM1_transporter 100.0 6.5E-39 1.4E-43 322.9 20.1 200 40-250 14-223 (236)
236 PRK15134 microcin C ABC transp 100.0 2.3E-38 5.1E-43 355.0 26.5 208 40-250 22-245 (529)
237 PRK09544 znuC high-affinity zi 100.0 1.8E-38 4E-43 323.0 23.3 191 39-250 16-208 (251)
238 PRK09580 sufC cysteine desulfu 100.0 4.9E-38 1.1E-42 318.8 26.3 210 39-250 13-234 (248)
239 PRK14264 phosphate ABC transpo 100.0 4.5E-38 9.8E-43 328.9 26.7 209 38-250 56-288 (305)
240 PRK14257 phosphate ABC transpo 100.0 4.5E-38 9.7E-43 331.6 26.7 205 39-250 94-312 (329)
241 TIGR01257 rim_protein retinal- 100.0 2E-38 4.3E-43 388.5 27.5 208 39-253 942-1151(2272)
242 PRK13549 xylose transporter AT 100.0 1.2E-38 2.7E-43 355.4 23.1 209 39-249 274-492 (506)
243 PRK14252 phosphate ABC transpo 100.0 6E-38 1.3E-42 321.7 26.2 205 39-250 28-248 (265)
244 cd03230 ABC_DR_subfamily_A Thi 100.0 2.9E-38 6.3E-43 303.7 21.4 159 40-240 13-173 (173)
245 PRK11174 cysteine/glutathione 100.0 1.2E-38 2.6E-43 361.7 21.9 198 38-251 361-572 (588)
246 TIGR03771 anch_rpt_ABC anchore 100.0 2.7E-38 5.9E-43 316.2 21.6 197 48-250 1-200 (223)
247 COG4604 CeuD ABC-type enteroch 100.0 1.7E-39 3.7E-44 306.8 11.5 216 33-251 7-225 (252)
248 TIGR01187 potA spermidine/putr 100.0 3.6E-38 7.9E-43 332.3 23.0 189 58-251 1-190 (325)
249 PRK13546 teichoic acids export 100.0 1.7E-37 3.6E-42 318.0 27.1 198 38-251 35-232 (264)
250 PRK13545 tagH teichoic acids e 100.0 2.1E-37 4.6E-42 337.5 29.3 198 40-253 37-234 (549)
251 cd03217 ABC_FeS_Assembly ABC-t 100.0 6.1E-38 1.3E-42 308.5 22.5 179 39-254 12-196 (200)
252 TIGR01189 ccmA heme ABC export 100.0 7.9E-38 1.7E-42 307.0 22.8 184 39-234 12-197 (198)
253 COG1129 MglA ABC-type sugar tr 100.0 5.6E-38 1.2E-42 338.7 23.8 206 38-246 19-229 (500)
254 cd03248 ABCC_TAP TAP, the Tran 100.0 9.2E-39 2E-43 319.8 16.4 195 40-240 27-226 (226)
255 PRK13539 cytochrome c biogenes 100.0 8.2E-38 1.8E-42 309.2 22.9 187 39-237 14-200 (207)
256 PRK09700 D-allose transporter 100.0 3.3E-38 7.1E-43 352.4 22.5 203 41-246 277-493 (510)
257 cd03229 ABC_Class3 This class 100.0 4.2E-38 9.1E-43 304.0 20.3 162 39-239 12-178 (178)
258 TIGR02633 xylG D-xylose ABC tr 100.0 4.2E-38 9E-43 350.7 23.1 206 40-247 273-488 (500)
259 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.5E-38 7.6E-43 324.5 20.8 195 40-251 17-225 (275)
260 cd03244 ABCC_MRP_domain2 Domai 100.0 4.7E-38 1E-42 313.5 20.5 190 40-245 17-220 (221)
261 TIGR02324 CP_lyasePhnL phospho 100.0 1.2E-37 2.6E-42 311.4 23.5 191 40-236 21-223 (224)
262 COG2274 SunT ABC-type bacterio 100.0 1.4E-38 3E-43 361.7 18.6 198 40-252 486-697 (709)
263 PRK10762 D-ribose transporter 100.0 5.7E-38 1.2E-42 349.6 22.6 206 41-249 266-482 (501)
264 COG4619 ABC-type uncharacteriz 100.0 5.4E-39 1.2E-43 296.2 11.6 195 38-240 14-212 (223)
265 COG4161 ArtP ABC-type arginine 100.0 3.5E-38 7.6E-43 288.9 16.7 206 38-248 13-227 (242)
266 cd03214 ABC_Iron-Siderophores_ 100.0 5.2E-38 1.1E-42 303.9 18.3 167 39-244 11-180 (180)
267 PRK10938 putative molybdenum t 100.0 6.3E-38 1.4E-42 348.4 21.4 198 39-250 15-223 (490)
268 PRK13540 cytochrome c biogenes 100.0 1.4E-37 3E-42 305.8 21.0 182 39-232 13-196 (200)
269 PRK11288 araG L-arabinose tran 100.0 7.6E-38 1.7E-42 348.6 21.1 206 41-249 267-483 (501)
270 cd03288 ABCC_SUR2 The SUR doma 100.0 1.2E-37 2.7E-42 318.0 19.9 200 40-251 34-243 (257)
271 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 9.4E-38 2E-42 360.4 21.3 195 39-251 465-673 (686)
272 cd03215 ABC_Carb_Monos_II This 100.0 1.8E-37 3.9E-42 300.7 19.7 161 42-240 15-182 (182)
273 PRK15439 autoinducer 2 ABC tra 100.0 1.6E-37 3.5E-42 346.6 22.1 205 42-249 278-490 (510)
274 KOG0058|consensus 100.0 6.4E-38 1.4E-42 344.9 17.7 202 37-251 478-691 (716)
275 cd03247 ABCC_cytochrome_bd The 100.0 2.4E-37 5.3E-42 298.6 19.6 162 40-244 15-178 (178)
276 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.1E-37 2.4E-42 361.2 20.4 196 39-251 491-700 (710)
277 cd03246 ABCC_Protease_Secretio 100.0 3.3E-37 7.2E-42 296.4 20.1 156 40-240 15-173 (173)
278 PRK10790 putative multidrug tr 100.0 1.9E-37 4.1E-42 352.2 21.3 196 40-251 354-563 (592)
279 KOG0057|consensus 100.0 2.3E-37 5E-42 330.2 20.3 197 39-251 364-574 (591)
280 PRK11176 lipid transporter ATP 100.0 3E-37 6.6E-42 349.9 22.0 198 40-251 356-567 (582)
281 COG4988 CydD ABC-type transpor 100.0 1.4E-37 3.1E-42 336.4 18.3 198 39-251 333-543 (559)
282 COG3845 ABC-type uncharacteriz 100.0 3.8E-37 8.3E-42 326.1 21.0 204 39-245 16-223 (501)
283 cd03369 ABCC_NFT1 Domain 2 of 100.0 5.9E-37 1.3E-41 302.8 21.0 184 40-246 21-207 (207)
284 TIGR01842 type_I_sec_PrtD type 100.0 3.1E-37 6.8E-42 347.0 21.5 202 40-251 331-542 (544)
285 PRK11160 cysteine/glutathione 100.0 3.4E-37 7.4E-42 348.6 21.8 197 40-251 353-562 (574)
286 PRK15177 Vi polysaccharide exp 100.0 1E-36 2.2E-41 302.8 22.4 195 42-256 2-197 (213)
287 COG1132 MdlB ABC-type multidru 100.0 1.9E-37 4.2E-42 350.4 19.3 202 39-251 341-552 (567)
288 COG0396 sufC Cysteine desulfur 100.0 2.3E-36 5E-41 292.8 23.5 218 40-261 17-243 (251)
289 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.6E-36 3.6E-41 307.6 23.4 190 42-249 9-205 (246)
290 TIGR03375 type_I_sec_LssB type 100.0 3.9E-37 8.5E-42 355.6 21.3 199 39-252 477-689 (694)
291 COG4586 ABC-type uncharacteriz 100.0 1.8E-37 3.9E-42 306.3 15.1 210 39-253 36-248 (325)
292 TIGR00958 3a01208 Conjugate Tr 100.0 3.6E-37 7.9E-42 356.2 20.1 196 39-251 493-702 (711)
293 COG4987 CydC ABC-type transpor 100.0 1.3E-37 2.9E-42 331.8 15.0 198 39-251 350-561 (573)
294 COG4172 ABC-type uncharacteriz 100.0 2.6E-36 5.7E-41 311.0 23.3 209 39-251 299-516 (534)
295 PRK13657 cyclic beta-1,2-gluca 100.0 8.7E-37 1.9E-41 346.5 21.5 197 40-251 348-558 (588)
296 TIGR01193 bacteriocin_ABC ABC- 100.0 4.8E-37 1E-41 355.6 19.6 198 39-251 486-697 (708)
297 cd03290 ABCC_SUR1_N The SUR do 100.0 3.6E-36 7.7E-41 299.6 21.7 185 40-239 14-218 (218)
298 KOG0055|consensus 100.0 5.7E-37 1.2E-41 354.3 17.8 199 38-251 364-576 (1228)
299 cd03250 ABCC_MRP_domain1 Domai 100.0 1.8E-36 4E-41 298.6 18.2 179 40-239 18-204 (204)
300 TIGR01192 chvA glucan exporter 100.0 2.3E-36 4.9E-41 342.5 21.4 201 40-251 348-558 (585)
301 TIGR01846 type_I_sec_HlyB type 100.0 1.6E-36 3.6E-41 350.4 20.0 198 39-251 469-680 (694)
302 cd03228 ABCC_MRP_Like The MRP 100.0 3.7E-36 8.1E-41 288.6 19.1 153 41-239 16-171 (171)
303 COG1119 ModF ABC-type molybden 100.0 8.3E-37 1.8E-41 299.2 14.8 208 36-245 40-256 (257)
304 PRK10535 macrolide transporter 100.0 1.3E-35 2.9E-40 339.4 26.9 204 40-250 21-231 (648)
305 TIGR02203 MsbA_lipidA lipid A 100.0 1.9E-36 4.1E-41 342.6 19.1 198 40-251 345-556 (571)
306 PRK10938 putative molybdenum t 100.0 3.5E-36 7.7E-41 334.4 20.9 206 37-244 270-485 (490)
307 PRK10789 putative multidrug tr 100.0 2.2E-36 4.7E-41 341.8 19.5 197 40-251 328-538 (569)
308 PRK13541 cytochrome c biogenes 100.0 1.1E-35 2.4E-40 291.2 21.5 179 40-232 14-192 (195)
309 cd03216 ABC_Carb_Monos_I This 100.0 1.1E-35 2.3E-40 283.3 20.7 147 39-242 12-162 (163)
310 TIGR02204 MsbA_rel ABC transpo 100.0 2.8E-36 6E-41 341.6 19.4 197 40-251 353-563 (576)
311 PRK15064 ABC transporter ATP-b 100.0 1E-35 2.2E-40 333.7 23.5 199 39-251 13-242 (530)
312 PRK10982 galactose/methyl gala 100.0 5.6E-36 1.2E-40 332.9 21.1 205 40-247 261-476 (491)
313 PRK11819 putative ABC transpor 100.0 1.6E-35 3.4E-40 333.8 25.0 197 39-250 19-249 (556)
314 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.9E-35 6.4E-40 303.9 22.8 186 40-251 50-247 (282)
315 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.6E-35 5.5E-40 331.9 24.1 197 40-251 18-248 (552)
316 cd03223 ABCD_peroxisomal_ALDP 100.0 3E-35 6.4E-40 281.1 20.8 151 40-239 14-164 (166)
317 PRK15064 ABC transporter ATP-b 100.0 1.8E-35 3.9E-40 331.8 22.6 192 37-250 329-524 (530)
318 COG4608 AppF ABC-type oligopep 100.0 3.6E-35 7.8E-40 293.4 20.7 173 40-251 26-199 (268)
319 COG4674 Uncharacterized ABC-ty 100.0 9.7E-36 2.1E-40 280.9 14.2 207 40-250 18-234 (249)
320 COG1101 PhnK ABC-type uncharac 100.0 3.5E-35 7.5E-40 281.3 16.1 205 37-243 16-230 (263)
321 PTZ00265 multidrug resistance 100.0 2.4E-35 5.1E-40 360.5 18.7 201 39-251 1180-1452(1466)
322 PRK13409 putative ATPase RIL; 100.0 1.2E-34 2.6E-39 326.9 22.7 184 42-246 354-537 (590)
323 PRK11819 putative ABC transpor 100.0 2.2E-34 4.8E-39 324.5 24.2 193 37-248 334-530 (556)
324 PRK10522 multidrug transporter 100.0 1.2E-34 2.7E-39 326.1 22.0 187 40-243 336-530 (547)
325 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.1E-34 2.4E-39 295.6 18.1 189 41-243 15-219 (255)
326 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.3E-34 7.1E-39 322.9 23.8 192 38-248 333-528 (552)
327 PLN03130 ABC transporter C fam 100.0 1.3E-34 2.9E-39 357.0 21.6 196 40-251 1252-1461(1622)
328 COG4618 ArpD ABC-type protease 100.0 7.7E-35 1.7E-39 308.1 16.3 203 39-253 348-562 (580)
329 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.4E-34 5.2E-39 324.2 21.5 188 40-243 355-551 (555)
330 TIGR02857 CydD thiol reductant 100.0 8.5E-35 1.8E-39 326.3 17.6 181 40-235 335-529 (529)
331 PLN03232 ABC transporter C fam 100.0 8.7E-35 1.9E-39 358.1 18.8 196 40-251 1249-1458(1495)
332 COG4172 ABC-type uncharacteriz 100.0 4E-34 8.7E-39 294.9 19.7 211 38-251 21-247 (534)
333 TIGR02868 CydC thiol reductant 100.0 1.7E-34 3.7E-39 323.8 17.0 169 40-221 348-529 (529)
334 PRK10636 putative ABC transpor 100.0 1E-33 2.2E-38 323.2 23.3 193 36-251 321-517 (638)
335 KOG0059|consensus 100.0 3.1E-34 6.7E-39 337.2 18.8 206 42-253 580-789 (885)
336 cd03238 ABC_UvrA The excision 100.0 1.4E-33 3E-38 271.5 20.0 157 39-240 7-166 (176)
337 PTZ00265 multidrug resistance 100.0 6.3E-34 1.4E-38 348.1 22.0 195 40-238 398-655 (1466)
338 KOG0055|consensus 100.0 2.8E-34 6.1E-39 332.1 17.8 205 36-251 999-1213(1228)
339 TIGR00957 MRP_assoc_pro multi 100.0 3.6E-34 7.8E-39 353.1 19.7 196 40-251 1299-1508(1522)
340 PTZ00243 ABC transporter; Prov 100.0 7.3E-34 1.6E-38 349.9 21.9 207 29-251 1310-1533(1560)
341 PRK11147 ABC transporter ATPas 100.0 2E-33 4.3E-38 321.2 22.5 195 36-249 328-526 (635)
342 cd03222 ABC_RNaseL_inhibitor T 100.0 2.2E-33 4.7E-38 270.4 18.9 150 38-250 11-162 (177)
343 COG1134 TagH ABC-type polysacc 100.0 6.3E-33 1.4E-37 272.2 22.3 205 37-256 37-241 (249)
344 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 4.7E-33 1E-37 259.8 18.9 132 40-239 13-144 (144)
345 COG4136 ABC-type uncharacteriz 100.0 1.4E-33 2.9E-38 256.0 14.6 180 38-221 13-195 (213)
346 TIGR01271 CFTR_protein cystic 100.0 2.4E-33 5.2E-38 344.9 22.0 196 39-251 1231-1440(1490)
347 COG4133 CcmA ABC-type transpor 100.0 1.6E-33 3.4E-38 265.3 13.8 179 37-223 12-192 (209)
348 PLN03073 ABC transporter F fam 100.0 1.5E-32 3.2E-37 315.5 24.8 192 40-252 522-715 (718)
349 COG4167 SapF ABC-type antimicr 100.0 1.1E-32 2.4E-37 257.5 19.2 209 39-251 25-239 (267)
350 PRK10636 putative ABC transpor 100.0 8.3E-33 1.8E-37 315.7 22.5 198 37-249 11-234 (638)
351 KOG0056|consensus 100.0 2.5E-33 5.5E-38 293.5 13.4 212 29-251 539-761 (790)
352 PRK11147 ABC transporter ATPas 100.0 2.9E-32 6.2E-37 311.6 22.5 196 39-250 15-242 (635)
353 PRK13409 putative ATPase RIL; 100.0 1.5E-32 3.3E-37 309.8 19.8 182 40-238 87-287 (590)
354 TIGR00954 3a01203 Peroxysomal 100.0 2.3E-32 5.1E-37 313.1 20.5 181 39-237 464-653 (659)
355 cd00267 ABC_ATPase ABC (ATP-bi 100.0 6.8E-32 1.5E-36 255.2 19.2 144 39-239 11-157 (157)
356 PLN03232 ABC transporter C fam 100.0 2.8E-31 6E-36 327.2 21.5 188 39-251 629-828 (1495)
357 COG4107 PhnK ABC-type phosphon 100.0 1.9E-31 4.1E-36 247.4 14.3 205 38-251 17-241 (258)
358 PLN03130 ABC transporter C fam 100.0 5.8E-31 1.3E-35 324.8 22.3 187 39-251 629-828 (1622)
359 TIGR01271 CFTR_protein cystic 100.0 6.5E-31 1.4E-35 323.5 22.6 190 40-251 439-636 (1490)
360 PTZ00243 ABC transporter; Prov 100.0 1.1E-30 2.3E-35 321.9 22.2 192 39-251 672-870 (1560)
361 TIGR00957 MRP_assoc_pro multi 100.0 1.2E-30 2.6E-35 322.0 22.3 191 40-251 651-850 (1522)
362 cd03270 ABC_UvrA_I The excisio 100.0 3.2E-30 7E-35 258.5 20.5 191 39-244 7-226 (226)
363 COG0488 Uup ATPase components 100.0 2.5E-30 5.3E-35 285.8 20.7 199 36-249 12-238 (530)
364 PLN03073 ABC transporter F fam 100.0 9.4E-31 2E-35 300.6 17.0 205 39-249 189-429 (718)
365 PF00005 ABC_tran: ABC transpo 100.0 6.6E-31 1.4E-35 242.0 12.1 130 43-189 1-137 (137)
366 COG5265 ATM1 ABC-type transpor 100.0 3.4E-31 7.4E-36 275.0 11.2 205 34-251 270-486 (497)
367 cd03271 ABC_UvrA_II The excisi 100.0 6.9E-29 1.5E-33 252.7 19.7 195 40-246 8-261 (261)
368 COG1129 MglA ABC-type sugar tr 100.0 1.5E-28 3.1E-33 265.9 20.3 202 42-246 274-485 (500)
369 cd03278 ABC_SMC_barmotin Barmo 100.0 1.3E-28 2.7E-33 241.8 12.7 165 44-237 14-190 (197)
370 KOG0054|consensus 100.0 8.8E-28 1.9E-32 284.2 22.1 188 39-251 533-731 (1381)
371 COG4778 PhnL ABC-type phosphon 100.0 1.7E-28 3.7E-33 227.1 12.6 193 39-237 23-227 (235)
372 KOG0054|consensus 100.0 2.4E-28 5.2E-33 289.0 16.7 197 39-251 1152-1362(1381)
373 cd03272 ABC_SMC3_euk Eukaryoti 99.9 7.9E-28 1.7E-32 243.3 13.4 190 34-236 9-234 (243)
374 COG0488 Uup ATPase components 99.9 7.3E-27 1.6E-31 258.2 22.1 189 39-251 334-525 (530)
375 COG4138 BtuD ABC-type cobalami 99.9 1.1E-28 2.5E-33 229.2 5.3 197 42-250 14-220 (248)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.9 3.8E-28 8.3E-33 241.0 1.4 182 35-237 12-204 (212)
377 COG3845 ABC-type uncharacteriz 99.9 1.5E-25 3.2E-30 238.2 20.8 207 40-249 271-490 (501)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1E-26 2.2E-31 236.8 10.5 179 53-236 25-242 (251)
379 cd03240 ABC_Rad50 The catalyti 99.9 5.2E-26 1.1E-30 224.5 12.3 167 45-237 15-197 (204)
380 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.5E-25 3.3E-30 222.6 15.1 180 44-239 18-210 (213)
381 PRK00635 excinuclease ABC subu 99.9 2.9E-24 6.3E-29 260.6 23.1 138 110-251 759-906 (1809)
382 PRK00349 uvrA excinuclease ABC 99.9 4.6E-24 1E-28 249.3 21.3 127 113-251 791-927 (943)
383 COG4615 PvdE ABC-type sideroph 99.9 3E-24 6.5E-29 221.3 10.8 186 41-244 337-530 (546)
384 COG4170 SapD ABC-type antimicr 99.9 5.2E-24 1.1E-28 203.4 10.1 212 39-251 19-248 (330)
385 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.4E-23 5.3E-28 204.5 15.0 171 43-239 12-192 (198)
386 COG4178 ABC-type uncharacteriz 99.9 3.8E-23 8.2E-28 228.0 17.8 177 40-237 406-588 (604)
387 TIGR00630 uvra excinuclease AB 99.9 9.7E-23 2.1E-27 237.8 21.8 125 113-249 789-923 (924)
388 COG1245 Predicted ATPase, RNas 99.9 5.8E-23 1.3E-27 215.3 15.6 174 43-236 357-530 (591)
389 KOG0927|consensus 99.9 5.6E-23 1.2E-27 219.6 11.8 208 36-250 84-308 (614)
390 KOG0927|consensus 99.9 1E-22 2.2E-27 217.6 10.3 193 34-248 397-593 (614)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.4E-22 3.1E-27 205.9 8.8 173 55-237 24-233 (247)
392 KOG2355|consensus 99.8 4.8E-20 1E-24 175.9 17.0 215 9-251 9-237 (291)
393 KOG0060|consensus 99.8 6.9E-20 1.5E-24 197.3 17.7 184 39-237 447-641 (659)
394 KOG0062|consensus 99.8 4.9E-21 1.1E-25 203.7 8.6 192 38-251 91-285 (582)
395 cd03277 ABC_SMC5_euk Eukaryoti 99.8 3.3E-20 7.1E-25 184.4 13.3 86 153-239 119-211 (213)
396 cd03280 ABC_MutS2 MutS2 homolo 99.8 1.6E-20 3.6E-25 184.7 10.2 153 42-244 16-172 (200)
397 KOG0066|consensus 99.8 8.5E-20 1.8E-24 190.0 14.3 191 9-222 567-762 (807)
398 COG1245 Predicted ATPase, RNas 99.8 1.2E-19 2.6E-24 190.5 9.9 171 50-237 97-288 (591)
399 COG2401 ABC-type ATPase fused 99.8 6.1E-19 1.3E-23 183.2 14.3 183 39-241 395-588 (593)
400 KOG0062|consensus 99.8 4.5E-19 9.7E-24 188.9 13.2 187 41-248 378-566 (582)
401 cd03239 ABC_SMC_head The struc 99.8 1.6E-18 3.5E-23 167.5 14.3 74 161-237 95-172 (178)
402 cd03285 ABC_MSH2_euk MutS2 hom 99.8 4.2E-19 9E-24 177.5 8.5 154 39-245 16-175 (222)
403 cd03227 ABC_Class2 ABC-type Cl 99.8 2.8E-18 6E-23 163.3 12.0 74 161-237 78-155 (162)
404 cd03283 ABC_MutS-like MutS-lik 99.8 1.2E-18 2.7E-23 171.3 9.8 147 40-235 14-163 (199)
405 cd03241 ABC_RecN RecN ATPase i 99.8 8.1E-18 1.8E-22 173.8 14.2 77 159-239 169-249 (276)
406 PRK00635 excinuclease ABC subu 99.7 5.8E-17 1.3E-21 197.6 21.2 127 113-251 1660-1796(1809)
407 COG0178 UvrA Excinuclease ATPa 99.7 1.3E-16 2.9E-21 177.7 19.2 127 113-251 783-919 (935)
408 PRK00349 uvrA excinuclease ABC 99.7 5.1E-17 1.1E-21 190.5 15.1 136 111-250 434-584 (943)
409 TIGR00630 uvra excinuclease AB 99.7 7.9E-17 1.7E-21 188.6 15.7 135 112-250 433-582 (924)
410 KOG0064|consensus 99.7 4E-17 8.7E-22 173.9 11.3 164 40-222 495-670 (728)
411 cd03243 ABC_MutS_homologs The 99.7 2.9E-17 6.2E-22 161.9 8.0 155 45-248 21-176 (202)
412 cd03282 ABC_MSH4_euk MutS4 hom 99.7 1.7E-16 3.7E-21 156.6 8.8 141 39-229 15-157 (204)
413 cd03242 ABC_RecF RecF is a rec 99.7 1.9E-15 4.1E-20 155.7 16.5 77 158-240 181-269 (270)
414 KOG0063|consensus 99.6 3.5E-15 7.7E-20 155.9 13.5 179 39-236 348-531 (592)
415 KOG0066|consensus 99.6 2.2E-16 4.7E-21 164.8 2.2 205 38-250 275-498 (807)
416 PF06422 PDR_CDR: CDR ABC tran 99.6 9.8E-16 2.1E-20 134.4 4.2 63 529-603 2-66 (103)
417 cd03284 ABC_MutS1 MutS1 homolo 99.6 3.6E-15 7.9E-20 148.6 8.5 159 40-249 18-179 (216)
418 TIGR02858 spore_III_AA stage I 99.5 1.7E-14 3.8E-19 147.8 10.3 139 54-248 112-266 (270)
419 smart00534 MUTSac ATPase domai 99.5 4.9E-14 1.1E-18 137.1 6.5 89 149-240 50-139 (185)
420 PF01061 ABC2_membrane: ABC-2 99.4 4.6E-15 1E-19 144.8 -3.1 160 349-510 51-210 (210)
421 PRK00064 recF recombination pr 99.4 8.3E-12 1.8E-16 133.8 19.9 77 159-240 272-359 (361)
422 PF02463 SMC_N: RecF/RecN/SMC 99.4 1.1E-13 2.3E-18 138.0 2.2 88 139-236 121-212 (220)
423 cd03281 ABC_MSH5_euk MutS5 hom 99.4 2.5E-12 5.5E-17 127.9 11.3 132 41-221 17-154 (213)
424 KOG0063|consensus 99.4 2.7E-12 5.9E-17 134.5 10.4 187 51-253 98-309 (592)
425 TIGR01069 mutS2 MutS2 family p 99.3 1.9E-12 4.2E-17 150.3 9.6 131 46-222 314-446 (771)
426 cd00820 PEPCK_HprK Phosphoenol 99.3 1.6E-12 3.5E-17 114.4 6.7 74 40-123 2-78 (107)
427 cd03287 ABC_MSH3_euk MutS3 hom 99.3 2E-11 4.3E-16 122.0 13.0 142 40-229 18-160 (222)
428 PTZ00132 GTP-binding nuclear p 99.3 3.7E-12 7.9E-17 126.5 7.6 45 164-208 156-205 (215)
429 PRK07721 fliI flagellum-specif 99.3 1.7E-10 3.6E-15 125.9 18.1 173 40-249 146-341 (438)
430 PRK00409 recombination and DNA 99.2 1E-11 2.2E-16 144.7 7.9 84 155-242 385-469 (782)
431 TIGR00634 recN DNA repair prot 99.2 3.7E-11 8.1E-16 136.1 9.3 77 159-239 439-519 (563)
432 PHA02562 46 endonuclease subun 99.2 3.8E-11 8.2E-16 136.1 8.6 79 157-240 465-555 (562)
433 TIGR00618 sbcc exonuclease Sbc 99.2 8.1E-11 1.7E-15 142.4 11.0 86 151-238 941-1036(1042)
434 cd01124 KaiC KaiC is a circadi 99.2 3.3E-10 7.1E-15 109.5 13.2 145 56-236 2-163 (187)
435 PRK10869 recombination and rep 99.2 1E-10 2.2E-15 131.7 10.3 75 160-238 430-508 (553)
436 PRK08533 flagellar accessory p 99.1 3.8E-10 8.3E-15 113.6 13.1 151 48-236 19-184 (230)
437 PF13304 AAA_21: AAA domain; P 99.1 5.2E-11 1.1E-15 118.1 6.0 63 158-221 234-299 (303)
438 cd01128 rho_factor Transcripti 99.1 4.3E-10 9.4E-15 114.2 11.6 180 48-240 11-211 (249)
439 cd03286 ABC_MSH6_euk MutS6 hom 99.1 1.6E-09 3.5E-14 108.1 15.2 136 40-221 17-153 (218)
440 TIGR02788 VirB11 P-type DNA tr 99.1 6E-10 1.3E-14 117.0 10.1 142 46-250 137-280 (308)
441 PRK13695 putative NTPase; Prov 99.0 7.5E-11 1.6E-15 113.4 2.9 81 156-243 74-156 (174)
442 COG0178 UvrA Excinuclease ATPa 99.0 2.6E-09 5.7E-14 120.3 15.4 137 111-251 426-577 (935)
443 cd01120 RecA-like_NTPases RecA 99.0 4.3E-10 9.4E-15 105.0 7.1 64 160-224 67-140 (165)
444 PRK01156 chromosome segregatio 99.0 2.7E-09 5.9E-14 127.5 13.5 79 156-236 797-883 (895)
445 PRK03918 chromosome segregatio 99.0 1E-09 2.3E-14 130.9 9.5 79 156-237 784-868 (880)
446 PRK13830 conjugal transfer pro 99.0 7.4E-09 1.6E-13 122.0 15.8 69 176-246 650-728 (818)
447 PRK06793 fliI flagellum-specif 98.9 5.4E-09 1.2E-13 113.4 11.3 154 40-245 144-305 (432)
448 TIGR03062 pip_yhgE_Cterm YhgE/ 98.9 3E-08 6.6E-13 97.9 14.5 115 389-507 57-171 (208)
449 PRK10246 exonuclease subunit S 98.9 5E-09 1.1E-13 126.6 10.6 82 154-237 943-1032(1047)
450 cd01125 repA Hexameric Replica 98.9 1.5E-08 3.2E-13 102.6 11.2 136 53-221 1-159 (239)
451 COG3910 Predicted ATPase [Gene 98.8 4.1E-08 8.9E-13 93.6 13.1 67 154-222 123-189 (233)
452 TIGR00606 rad50 rad50. This fa 98.8 6.6E-09 1.4E-13 128.4 9.4 73 156-229 1195-1277(1311)
453 smart00382 AAA ATPases associa 98.8 2.1E-07 4.6E-12 83.4 15.4 119 52-219 1-124 (148)
454 cd01131 PilT Pilus retraction 98.8 2.7E-08 5.8E-13 97.9 10.2 58 170-237 66-123 (198)
455 PRK06067 flagellar accessory p 98.8 7.8E-08 1.7E-12 96.9 13.8 159 43-237 14-187 (234)
456 TIGR02168 SMC_prok_B chromosom 98.8 7.6E-09 1.6E-13 126.6 7.5 79 154-236 1083-1165(1179)
457 TIGR01247 drrB daunorubicin re 98.8 1.6E-07 3.4E-12 94.6 15.8 117 387-505 85-201 (236)
458 TIGR03238 dnd_assoc_3 dnd syst 98.8 5.7E-09 1.2E-13 113.2 4.6 51 40-93 19-70 (504)
459 TIGR00025 Mtu_efflux ABC trans 98.7 3.6E-07 7.9E-12 91.9 16.4 116 389-505 76-193 (232)
460 PRK06995 flhF flagellar biosyn 98.7 3.6E-08 7.9E-13 108.5 9.2 129 41-190 244-378 (484)
461 TIGR02169 SMC_prok_A chromosom 98.7 2.2E-08 4.8E-13 122.7 8.0 78 156-237 1070-1151(1164)
462 PRK02224 chromosome segregatio 98.6 6E-08 1.3E-12 115.9 9.3 78 158-237 779-868 (880)
463 cd01130 VirB11-like_ATPase Typ 98.6 1.9E-07 4.1E-12 90.9 8.3 84 42-126 14-99 (186)
464 TIGR03881 KaiC_arch_4 KaiC dom 98.5 2.5E-08 5.4E-13 100.0 1.1 32 43-74 9-41 (229)
465 TIGR01248 drrC daunorubicin re 98.5 2.5E-06 5.3E-11 80.5 13.6 127 375-505 16-145 (152)
466 cd01122 GP4d_helicase GP4d_hel 98.5 3.1E-06 6.7E-11 87.1 15.5 157 40-221 17-191 (271)
467 TIGR01291 nodJ ABC-2 type tran 98.5 4.6E-06 9.9E-11 85.2 16.5 115 389-505 99-213 (253)
468 TIGR01420 pilT_fam pilus retra 98.5 8.4E-07 1.8E-11 94.7 10.9 124 50-235 119-242 (343)
469 cd02023 UMPK Uridine monophosp 98.4 2E-07 4.4E-12 91.4 5.3 113 55-193 1-113 (198)
470 PRK13891 conjugal transfer pro 98.4 5E-06 1.1E-10 98.7 17.9 55 171-227 680-735 (852)
471 PRK14079 recF recombination pr 98.4 4E-07 8.7E-12 97.4 7.8 76 160-244 263-347 (349)
472 TIGR01026 fliI_yscN ATPase Fli 98.4 2.1E-06 4.6E-11 94.1 13.4 174 39-249 150-346 (440)
473 TIGR02655 circ_KaiC circadian 98.4 1.1E-07 2.3E-12 106.1 3.4 165 43-236 10-190 (484)
474 PRK07196 fliI flagellum-specif 98.4 4.1E-07 8.9E-12 99.0 7.3 171 39-243 142-333 (434)
475 TIGR00611 recf recF protein. A 98.4 5.6E-07 1.2E-11 96.8 7.2 58 160-221 275-341 (365)
476 PRK05399 DNA mismatch repair p 98.3 1.4E-06 3.1E-11 103.1 8.2 139 40-231 595-738 (854)
477 COG0419 SbcC ATPase involved i 98.3 2.4E-06 5.2E-11 102.5 9.7 80 156-238 811-898 (908)
478 PRK13898 type IV secretion sys 98.2 4.6E-05 9.9E-10 90.3 18.9 48 174-222 638-686 (800)
479 PRK06315 type III secretion sy 98.2 2.9E-06 6.2E-11 92.7 8.1 171 39-246 151-345 (442)
480 PF00488 MutS_V: MutS domain V 98.2 4.2E-05 9.1E-10 77.3 15.8 152 13-229 11-172 (235)
481 PRK09825 idnK D-gluconate kina 98.2 8.7E-07 1.9E-11 85.6 3.4 66 52-122 2-69 (176)
482 TIGR02680 conserved hypothetic 98.2 2.3E-06 5E-11 106.0 7.6 62 155-220 1242-1315(1353)
483 PRK06002 fliI flagellum-specif 98.2 3.5E-06 7.5E-11 91.9 8.0 172 40-243 153-343 (450)
484 TIGR00416 sms DNA repair prote 98.2 1.3E-05 2.9E-10 88.5 12.3 63 177-239 169-247 (454)
485 PLN03210 Resistant to P. syrin 98.2 5.7E-06 1.2E-10 101.6 10.0 163 46-258 200-365 (1153)
486 cd01121 Sms Sms (bacterial rad 98.1 2.7E-05 5.9E-10 83.9 12.3 62 177-238 157-234 (372)
487 PF13555 AAA_29: P-loop contai 98.1 4.5E-06 9.7E-11 66.2 4.1 36 43-78 12-48 (62)
488 PRK00454 engB GTP-binding prot 98.0 4.6E-05 1E-09 73.8 12.1 66 140-209 126-195 (196)
489 TIGR02903 spore_lon_C ATP-depe 98.0 1.2E-05 2.5E-10 92.3 9.0 111 52-205 174-291 (615)
490 PF13558 SbcCD_C: Putative exo 98.0 9.1E-06 2E-10 69.7 5.9 51 155-205 27-90 (90)
491 COG0842 ABC-type multidrug tra 98.0 0.00021 4.5E-09 72.6 16.8 115 392-506 131-245 (286)
492 cd00009 AAA The AAA+ (ATPases 98.0 1.9E-05 4.1E-10 71.4 8.2 55 166-221 72-130 (151)
493 PRK15066 inner membrane transp 98.0 0.00021 4.6E-09 73.1 16.7 116 388-505 100-215 (257)
494 PRK13873 conjugal transfer ATP 98.0 5.7E-05 1.2E-09 89.6 13.6 62 175-237 632-702 (811)
495 cd01876 YihA_EngB The YihA (En 98.0 9.8E-06 2.1E-10 75.4 5.8 64 139-206 100-169 (170)
496 TIGR03861 phenyl_ABC_PedC alco 98.0 0.00025 5.5E-09 72.2 16.4 115 389-505 99-217 (253)
497 TIGR00235 udk uridine kinase. 98.0 3E-06 6.5E-11 83.9 1.8 28 51-78 4-31 (207)
498 PRK08149 ATP synthase SpaL; Va 98.0 1.7E-05 3.6E-10 86.5 7.5 68 39-108 138-215 (428)
499 PRK01889 GTPase RsgA; Reviewed 97.9 1.4E-05 2.9E-10 85.9 6.3 70 43-113 185-254 (356)
500 PRK09270 nucleoside triphospha 97.9 1.2E-05 2.5E-10 81.0 5.1 73 51-126 31-107 (229)
No 1
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.1e-93 Score=870.39 Aligned_cols=542 Identities=22% Similarity=0.307 Sum_probs=444.8
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC---CCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS---GTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~---~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~ 112 (606)
++++||+|+|+.+++||+++|+||||||||||||+|+|+.+ .+.+|+|.+||++++. ..+|+.++|++|++.++|
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 45689999999999999999999999999999999999863 2578999999998743 235677999999999999
Q ss_pred CCCHHHHHHHHHHccCCC----CCCHHHHHHH-HHHHHHHcCCchhhccc-----CCCCCHHHHHHHHHHHHHhhCCCEE
Q psy10223 113 SLTVEQTLYYAAHLSIGP----QVSRYVRNAR-IRQVLADLALSNVARRN-----ISELTPSEHRRVVIGTQLVKDPVLL 182 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~~~~-----v~~LSgGerqRvsIa~aL~~~p~ll 182 (606)
.+||+|||.|+++++.+. +.++++..++ ++++++.+||+++.|++ +++|||||||||+||++|+.+|+++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999998876432 2344444444 46789999999888765 5789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHHHcCCCCCC
Q psy10223 183 LLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPE 262 (606)
Q Consensus 183 llDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~~~G~~~~~ 262 (606)
+|||||+|||+.++.++++.|++++++.|+|+|+++|||+++++++||+|++|++|+++|+|+++++++||+++||+||+
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~ 311 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPD 311 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999997678999999999988999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhcccc-cchhhHHHhhcHHHHHHHHHHHHHcCCccccccccccc---cC-----------------C---C
Q psy10223 263 LENPLMYYLCLSTV-DRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVIM---DH-----------------G---N 318 (606)
Q Consensus 263 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---~~-----------------~---~ 318 (606)
++||+||++++... +++.++++++..+++.+++++.|+++..+++...+... .. . .
T Consensus 312 ~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1394)
T TIGR00956 312 RQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTR 391 (1394)
T ss_pred CCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhccccc
Confidence 99999999987654 34444455555666777787777776544433222110 00 0 0
Q ss_pred CCCcccccccccc---ccc------c---------------------CCcchHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10223 319 STIPSLTSHKMPL---VNF------S---------------------KPGGFQDYQWSFMSRNGLIFSSISGSYFISTFI 368 (606)
Q Consensus 319 ~~~~~~~~~~~~~---~~~------~---------------------~~~~~~~~~~~~~~r~g~lf~~~~~~~f~~~~~ 368 (606)
...+...+...++ ..+ + .+.....++.++++|.|++|+++++..|.+ +.
T Consensus 392 ~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~-~~ 470 (1394)
T TIGR00956 392 PSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSS-LL 470 (1394)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHH-HH
Confidence 0000000000000 000 0 001112567789999999999999888876 67
Q ss_pred HHHHHHHhhHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchh-HHHHHHHHHHHHHHHHHHHH
Q psy10223 369 AAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTST-DLFQFSLMLWSCFLFAEYLS 447 (606)
Q Consensus 369 ~i~~~~~~R~i~~re~~~~~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~-~~f~~~l~~~~~~~~~~s~~ 447 (606)
++..++.+|+||+||+++++|||++|++|++++|+|+.++.+++|++|+|||+||++++ .||+|+++++++.+++++++
T Consensus 471 ~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~ 550 (1394)
T TIGR00956 471 EIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLF 550 (1394)
T ss_pred HHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999999999999999999999999999999999999999999999998765 46666688888888888999
Q ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHHHHhccCcccccccCCCccccC
Q psy10223 448 VALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGRLRNMYSDKYSNCT 527 (606)
Q Consensus 448 ~~~~~~~~~~~~aa~~~~~~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~nef~~~~~~~ef~~~~~~C~ 527 (606)
+.+++++++...|. ..++++++++++|+||++|+++||+||+|++|+||++|||||++.|||. +..+.|.
T Consensus 551 ~~i~a~~~~~~~A~-~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~---------~~~~~C~ 620 (1394)
T TIGR00956 551 RSIGAVTKTLSEAM-TPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFH---------GRRFECS 620 (1394)
T ss_pred HHHHHhcCCHHHHH-HHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhc---------CCccccc
Confidence 99999888765554 4555557788999999999999999999999999999999999777655 6778997
Q ss_pred CCCCCCCccCCh--hHHHhhhcCCCCCcccccceeeechhhhhhhhhCCCCCCcccccccccchhHHHHHHHHHHhh
Q psy10223 528 IPHPFGCRYTDG--ASFLSERYGHETGDFSFFITKYTDGASFLSERYGHETGDFSLSDVLDSNFNMTITLSFAFTLM 602 (606)
Q Consensus 528 ~~~~~~c~y~~g--~~~l~~~~g~~~g~~~~~~~~~v~g~~y~~~~~~~~~~~~~~~~~wr~n~gi~~~~~~~~~~~ 602 (606)
..+|.+..|.+. .+..|...|+.+| +.+|+|++||+..|| |+++|+|| |+||+++|+++|.++
T Consensus 621 ~~~p~g~~y~~~~~~~~~C~~~g~~~g------~~~~~G~~~L~~~~~-----~~~~~~w~-n~gil~~~~v~f~~~ 685 (1394)
T TIGR00956 621 QYVPSGGGYDNLGVTNKVCTVVGAEPG------QDYVDGDDYLKLSFQ-----YYNSHKWR-NFGIIIGFTVFFFFV 685 (1394)
T ss_pred ccccCCCCCCCCCccCccccCCCCcCC------cccccHHHHHHhcCC-----cccchhhH-HHHHHHHHHHHHHHH
Confidence 666777777653 4667999999999 559999999999999 99999999 999999999999875
No 2
>KOG0065|consensus
Probab=100.00 E-value=2.9e-93 Score=817.62 Aligned_cols=538 Identities=22% Similarity=0.321 Sum_probs=444.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC--CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV 116 (606)
..+||+|+|+.++|||++.++||+|||||||||+|+|..+. ...|+|.|||.+.++...++.++|++|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 35799999999999999999999999999999999998753 2358999999998764457899999999999999999
Q ss_pred HHHHHHHHHccCCC----CCCHHHHHH-HHHHHHHHcCCchhhccc-----CCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 117 EQTLYYAAHLSIGP----QVSRYVRNA-RIRQVLADLALSNVARRN-----ISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 117 ~e~l~f~~~~~~~~----~~~~~~~~~-~v~~~l~~lgL~~~~~~~-----v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
+|+|.|+++++.+. +.++.++.. ..+.+++.+||++++|++ +|++||||||||+||++++.+|++++|||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 99999999998663 234444333 567788999999988776 48999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHHHcCCCCCCCCCc
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENP 266 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~~~G~~~~~~~~~ 266 (606)
+|+|||+.++.++++.||++++..+.|.+++++||+++++++||+|++|++|++||+||.+++++||+++||.||+++++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccccchhhHHHhh--cHHHHH-HHHHHHHHcCCccccccccccccCCCC--CCccccc--ccc----------
Q psy10223 267 LMYYLCLSTVDRRSRERFIE--SNNQIV-ALVEKFKIEGAPYRKCASSVIMDHGNS--TIPSLTS--HKM---------- 329 (606)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~--~~~---------- 329 (606)
+||+.++...-.+.+....+ ..+.++ ++++++|.++..+++...+........ ....... ...
T Consensus 367 ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~ 446 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACT 446 (1391)
T ss_pred HHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHH
Confidence 99999876621111221112 233444 788888888876665543322100000 0000000 000
Q ss_pred ------------------------ccccccCCcchH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q psy10223 330 ------------------------PLVNFSKPGGFQ-DYQWSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEA 384 (606)
Q Consensus 330 ------------------------~~~~~~~~~~~~-~~~~~~~~r~g~lf~~~~~~~f~~~~~~i~~~~~~R~i~~re~ 384 (606)
+++.++.+.... .+..+...|+|++||++.+.+|.+ +.++....+.||||+|||
T Consensus 447 ~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~-laEi~~~~~~~pv~~Khr 525 (1391)
T KOG0065|consen 447 IREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNG-LAEIALTFQRLPVFYKHR 525 (1391)
T ss_pred HHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHh-HHHHHHHHhhcchHHHhh
Confidence 000001111111 345567889999999999988776 899999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q psy10223 385 QEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTST-DLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVV 463 (606)
Q Consensus 385 ~~~~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~-~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~ 463 (606)
...+|+|+|++++.+++++|++++.+++|.+|+||++||+++| +||++||+++++..++.++++.+++++++...|+.
T Consensus 526 ~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~- 604 (1391)
T KOG0065|consen 526 DLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANL- 604 (1391)
T ss_pred cccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhh-
Confidence 9999999999999999999999999999999999999997765 57777788888888888888888887776655544
Q ss_pred HHHHHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHHHHhccCcccccccCCCccccCCCCCCCCccCCh--hH
Q psy10223 464 SSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGRLRNMYSDKYSNCTIPHPFGCRYTDG--AS 541 (606)
Q Consensus 464 ~~~~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~nef~~~~~~~ef~~~~~~C~~~~~~~c~y~~g--~~ 541 (606)
.+.+.++++.+|+||+||.++||+||+|++|+||+.||||+|+.|| |+++++.|+ |.|+.|.|. ++
T Consensus 605 ~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NE---------F~~~~~~c~---p~gp~y~n~~~~~ 672 (1391)
T KOG0065|consen 605 IGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNE---------FHGRRWPCS---PSGPAYDNISIEN 672 (1391)
T ss_pred HhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhh---------hhcccCCCC---CCCCccccccccc
Confidence 4555677888999999999999999999999999999999995555 558889996 778888764 57
Q ss_pred HHhhhcCCCCCcccccceeeechhhhhhhhhCCCCCCcccccccccchhHHHHHHHHHHhh
Q psy10223 542 FLSERYGHETGDFSFFITKYTDGASFLSERYGHETGDFSLSDVLDSNFNMTITLSFAFTLM 602 (606)
Q Consensus 542 ~l~~~~g~~~g~~~~~~~~~v~g~~y~~~~~~~~~~~~~~~~~wr~n~gi~~~~~~~~~~~ 602 (606)
..|...|..+| +.+|+|++|++.+|+ |.+.|.|| |+||+++|.++|.++
T Consensus 673 ~~c~~~~~~~G------~~~v~g~~~l~~~~~-----y~~~~~Wr-~~gillgf~v~f~~~ 721 (1391)
T KOG0065|consen 673 KVCAATGATLG------NDYVSGRDYLKVQYQ-----YEYKWYWR-NFGILLGFTVFFNFV 721 (1391)
T ss_pred ccchhhccccC------ceEEecccccccccc-----cccceeEe-ehhHHHHHHHHHHHH
Confidence 88999999999 669999999999999 99999999 999999999999875
No 3
>KOG0061|consensus
Probab=100.00 E-value=3e-88 Score=763.12 Aligned_cols=519 Identities=30% Similarity=0.504 Sum_probs=419.9
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC--CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lT 115 (606)
+.+++|+|||+.++|||++||||||||||||||++|+|+..+ ..+|+|++||++.+.+.+++.+|||.|||.++|+||
T Consensus 41 ~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LT 120 (613)
T KOG0061|consen 41 KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLT 120 (613)
T ss_pred ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccccccccc
Confidence 357899999999999999999999999999999999999863 478999999988877788999999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCC-----CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS-----ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~-----~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
|+|+|.|++++|.+...++++++++++++++++||.+++|+.++ ++||||||||+||.+|+++|+||++||||+|
T Consensus 121 V~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 121 VRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 99999999999999888999999999999999999999999984 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHHHcCCCCCCCCCchhhh
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYY 270 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~~~G~~~~~~~~~~~~~ 270 (606)
||+.++.++++.|+++|++ |+|||+|+|||+.+++++||++++|++|+++|+|+++++.+||++.|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999987 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccchhhHHHhhcHHHHHHHHHHHHHcCCcccccc----ccccccCCCC---CCccccccc----ccc-ccccCCc
Q psy10223 271 LCLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCA----SSVIMDHGNS---TIPSLTSHK----MPL-VNFSKPG 338 (606)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~----~~~~~~~~~~---~~~~~~~~~----~~~-~~~~~~~ 338 (606)
+++.+.+...++ ....++.....+.+.. .....+.. .......... ...+..+.. ..+ ...+.+.
T Consensus 280 l~l~s~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~ 356 (613)
T KOG0061|consen 280 LDLLSVDSGTRE--LEEAVRIAKLINKFSQ-TDNLKKTLEALEKSLSTSKKVEIGTSPSWWTQFKILLKRSLKNIRRDPS 356 (613)
T ss_pred HHHHccCCCchh--HHhHHHHHHHhhhccc-cchhhhhHHHHhhhcccccccccccCCcHHHHHHHHHHHHhHHHhhcHH
Confidence 998775411111 1111222222111110 00000000 0000000000 000000000 000 0000010
Q ss_pred ---------------------chHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCcccHHHHHHH
Q psy10223 339 ---------------------GFQDYQWSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILT 397 (606)
Q Consensus 339 ---------------------~~~~~~~~~~~r~g~lf~~~~~~~f~~~~~~i~~~~~~R~i~~re~~~~~Y~~~a~~la 397 (606)
....+..++++|.|++|+.+....|.+++.++..|+.||++|.||+.+++|+.++|++|
T Consensus 357 ~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la 436 (613)
T KOG0061|consen 357 LLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLA 436 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHH
Confidence 01146667779999999999999888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhhe
Q psy10223 398 YIFFSLPFSILSVGAASWIIFQATGLSTS-TDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYINIIFLVLGS 476 (606)
Q Consensus 398 ~~l~dlP~~~~~~~if~~i~Yfm~gl~~~-~~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~~~~~~~l~~ 476 (606)
++++++|+.++.+++|++|+|||+|++.+ .+|+++.+++++..+++++++.++++.+++. ..+...++++++++++++
T Consensus 437 ~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~-~~a~~~~~~~~~~f~l~~ 515 (613)
T KOG0061|consen 437 KTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNL-SLATSLGPVLLLPFLLFG 515 (613)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-hheeehHHHHHHHHHHHh
Confidence 99999999999999999999999999755 5677777889999999999999999999884 445555555677889999
Q ss_pred eeecCCCChhhHHHHHhhhcHHHHHHHHHHHHhccCcccccccCCCccccCCCCCCCCccCChhHHHhhhcCCCCCcccc
Q psy10223 477 GYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGRLRNMYSDKYSNCTIPHPFGCRYTDGASFLSERYGHETGDFSF 556 (606)
Q Consensus 477 Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~nef~~~~~~~ef~~~~~~C~~~~~~~c~y~~g~~~l~~~~g~~~g~~~~ 556 (606)
||+++.+++|.||+|++|+|+++|++|++++|||++ ....|....+ .|...++.++++.
T Consensus 516 G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~---------~~~~~~~~~~-~~~~~~~~~~l~~----------- 574 (613)
T KOG0061|consen 516 GFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSG---------GSSRCFLSGN-LCCESTGEDVLKQ----------- 574 (613)
T ss_pred hhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhc---------cccccccCcC-CcccccHHHHHHh-----------
Confidence 999999999999999999999999999999999882 3456643222 3334555555543
Q ss_pred cceeeechhhhhhhhhCCCCCCcccccccccchhHHHHHHHHHHhhc
Q psy10223 557 FITKYTDGASFLSERYGHETGDFSLSDVLDSNFNMTITLSFAFTLMD 603 (606)
Q Consensus 557 ~~~~~v~g~~y~~~~~~~~~~~~~~~~~wr~n~gi~~~~~~~~~~~~ 603 (606)
.+ +.-.|.|. |+.++.+|.++|.++.
T Consensus 575 ---------------~~-----~~~~~~~~-~l~~l~~~~~~~~il~ 600 (613)
T KOG0061|consen 575 ---------------LG-----FEDSSFWL-DLLVLLAFIVFFRVLG 600 (613)
T ss_pred ---------------cC-----Ccccccch-hHHHHHHHHHHHHHHH
Confidence 23 56677899 9999999999987763
No 4
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.8e-87 Score=759.90 Aligned_cols=519 Identities=25% Similarity=0.403 Sum_probs=412.2
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC--CeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT--TRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~--~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lT 115 (606)
+++++|+|+|+++++||+++|+|||||||||||++|+|+.++. .+|+|.+||.+++...+++.++|++|+|.++|.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3578999999999999999999999999999999999987632 47999999999875567888999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCC------CCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS------ELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~------~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
|+|||.|+++++.+...++++++++++++++.+||.++.|+.++ +|||||||||+||++|+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988776666777778889999999999999999876 699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHHHcCCCCCCCCCchhh
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMY 269 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~~~G~~~~~~~~~~~~ 269 (606)
|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||++++|++|+++|+|+++++++||+++|++||+..||+|+
T Consensus 196 gLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~ 274 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADF 274 (617)
T ss_pred chhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHH
Confidence 9999999999999999986 489999999999889999999999999999999999999999999999999999999999
Q ss_pred hhhcccccchhhHHHhhcHHHHHHHHHHHHHcCCcccccccccc---c-cC---CCCC----Ccccccccccc---ccc-
Q psy10223 270 YLCLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVI---M-DH---GNST----IPSLTSHKMPL---VNF- 334 (606)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~---~-~~---~~~~----~~~~~~~~~~~---~~~- 334 (606)
++++...+....+ +...+.++..+.+ .++..+++...... . .. .... .........++ ..+
T Consensus 275 ~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~ 350 (617)
T TIGR00955 275 YVQVLAVIPGSEN---ESRERIEKICDSF-AVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRS 350 (617)
T ss_pred HHHHhhcCccccc---chHHHHHHHHHHH-hcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHH
Confidence 9987654322111 1111222222222 22211111110000 0 00 0000 00000000000 000
Q ss_pred -----cCC---------------------cchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCc
Q psy10223 335 -----SKP---------------------GGFQDYQWSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGL 388 (606)
Q Consensus 335 -----~~~---------------------~~~~~~~~~~~~r~g~lf~~~~~~~f~~~~~~i~~~~~~R~i~~re~~~~~ 388 (606)
+.+ .....++.++++|.|++|+++++..|.+++..+..++.+|++|+||+.+++
T Consensus 351 ~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~ 430 (617)
T TIGR00955 351 WLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGL 430 (617)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 000 011146778899999999998888888777888899999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Q psy10223 389 YSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTD-LFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYI 467 (606)
Q Consensus 389 Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~~-~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~ 467 (606)
|++++|++|++++|+|+.++.+++|++|+|||+|++.++. ||+|+++++++.++++++++.+++++++...|+.. +++
T Consensus 431 Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~-~~~ 509 (617)
T TIGR00955 431 YRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTV-GPP 509 (617)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH-HHH
Confidence 9999999999999999999999999999999999987654 55666777888888999999999988887655554 445
Q ss_pred HHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHHHHhccCcccccccCCCcc-ccCCCCCCCCccCChhHHHhhh
Q psy10223 468 NIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGRLRNMYSDKYS-NCTIPHPFGCRYTDGASFLSER 546 (606)
Q Consensus 468 ~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~nef~~~~~~~ef~~~~~-~C~~~~~~~c~y~~g~~~l~~~ 546 (606)
+++++++|+||+++.++||+||+|++|+||++||+|+++.|||. +..+ +|.+... +..|
T Consensus 510 ~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~---------~~~~~~c~~~~~---------~~~c-- 569 (617)
T TIGR00955 510 FVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWS---------DVDNIECTSANT---------TGPC-- 569 (617)
T ss_pred HHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhC---------CCccccccCcCc---------CCCC--
Confidence 56778899999999999999999999999999999999888887 3332 5632100 0011
Q ss_pred cCCCCCcccccceeeechhhhhhhhhCCCCCCcccccccccchhHHHHHHHHHHhhc
Q psy10223 547 YGHETGDFSFFITKYTDGASFLSERYGHETGDFSLSDVLDSNFNMTITLSFAFTLMD 603 (606)
Q Consensus 547 ~g~~~g~~~~~~~~~v~g~~y~~~~~~~~~~~~~~~~~wr~n~gi~~~~~~~~~~~~ 603 (606)
.++|+.+| .+|| ++.+|.|+ |++|+++|.++|.++.
T Consensus 570 --------------~~~g~~~l-~~~g-----~~~~~~~~-~~~il~~~~~~~~~l~ 605 (617)
T TIGR00955 570 --------------PSSGEVIL-ETLS-----FRNADLYL-DLIGLVILIFFFRLLA 605 (617)
T ss_pred --------------CcChHHHH-HhcC-----CCcccHHH-HHHHHHHHHHHHHHHH
Confidence 23565666 4788 99999999 9999999999988763
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.6e-87 Score=811.05 Aligned_cols=518 Identities=18% Similarity=0.230 Sum_probs=402.8
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCC---eeEEEECCEeCCcccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT---RGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~---~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~l 114 (606)
.++.||+|+|+.++|||+++|+||||||||||||+|+|+.+ +. +|+|.+||+++++...++.++|++|+|.|+|++
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~-~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD-PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-CCCcceeEEEECCEechhhcccceeEEecccccCCCcC
Confidence 35789999999999999999999999999999999999986 44 899999999886544577899999999999999
Q ss_pred CHHHHHHHHHHccCCC-------CCCHHHH------------------------HHHHHHHHHHcCCchhh-----cccC
Q psy10223 115 TVEQTLYYAAHLSIGP-------QVSRYVR------------------------NARIRQVLADLALSNVA-----RRNI 158 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~-------~~~~~~~------------------------~~~v~~~l~~lgL~~~~-----~~~v 158 (606)
||+|||.|+++++.+. ..++.++ +..++++++.+||+++. |+.+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 9999999998765321 1112211 12357789999999876 4567
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCC
Q psy10223 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLG 238 (606)
Q Consensus 159 ~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G 238 (606)
++|||||||||+||++|+.+|+++||||||+|||+.++.++++.|++++++.|+|+|+++|||.++++++||+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 89999999999999999999999999999999999999999999999988778999999999998999999999999999
Q ss_pred eEEEecChhHHHHHHHHcCCCCCCCCCchhhhhhcccccchhhHHHhhc-HH---HHHHHHHHHHHcCCccccccccccc
Q psy10223 239 DLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLCLSTVDRRSRERFIES-NN---QIVALVEKFKIEGAPYRKCASSVIM 314 (606)
Q Consensus 239 ~~v~~G~~~~~~~~f~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~s~~~~~~~~~~~~ 314 (606)
+++|+||++++++||+++||+||++.||+||++++...+.+... +.+. .| ++.+++++.|+++..+++...+...
T Consensus 415 ~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 493 (1470)
T PLN03140 415 QIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQY-WADRNKPYRYISVSEFAERFKSFHVGMQLENELSV 493 (1470)
T ss_pred eEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhh-hhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhh
Confidence 99999999999999999999999999999999988664322111 1111 22 2344555555555433322221110
Q ss_pred c------CCC--CCCcccccccccc---ccc------cCCcc------------------hH------hhHHHHHHHHHH
Q psy10223 315 D------HGN--STIPSLTSHKMPL---VNF------SKPGG------------------FQ------DYQWSFMSRNGL 353 (606)
Q Consensus 315 ~------~~~--~~~~~~~~~~~~~---~~~------~~~~~------------------~~------~~~~~~~~r~g~ 353 (606)
. +.. ....+......++ ..+ +.+.. |. .+....+.+.|.
T Consensus 494 ~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~ 573 (1470)
T PLN03140 494 PFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGA 573 (1470)
T ss_pred hhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHH
Confidence 0 000 0000000000000 000 00000 00 111233456677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchh-HHHHH
Q psy10223 354 IFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTST-DLFQF 432 (606)
Q Consensus 354 lf~~~~~~~f~~~~~~i~~~~~~R~i~~re~~~~~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~-~~f~~ 432 (606)
+||++++.+|.+ +.++..++.+||||+||+++++|+|++|++|++++|+|+.++.+++|++|+|||+||++++ +||+|
T Consensus 574 lff~~l~~~~~~-~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f 652 (1470)
T PLN03140 574 LLFSMIINMFNG-FAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQ 652 (1470)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHH
Confidence 888887777655 7889999999999999999999999999999999999999999999999999999998665 56666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHHHHhccC
Q psy10223 433 SLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGD 512 (606)
Q Consensus 433 ~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~nef~~ 512 (606)
+++++++.+++.++++.+++++++...| ...++++++++++|+||+||+++||+||+|++|+||++|||||++.|||.+
T Consensus 653 ~l~~~l~~~~~~~l~~~i~a~~~~~~~A-~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~ 731 (1470)
T PLN03140 653 LLLVFLIQQMAAGIFRLIASVCRTMIIA-NTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFA 731 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHH-HHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccC
Confidence 7888888999999999999988876554 445556677889999999999999999999999999999999999999863
Q ss_pred cccccccCCCccccCCCCCCCCccCChhHHHhhhcCCCCCcccccceeeechhhhhhhhhCCCCCCcccccc--cccchh
Q psy10223 513 GRLRNMYSDKYSNCTIPHPFGCRYTDGASFLSERYGHETGDFSFFITKYTDGASFLSERYGHETGDFSLSDV--LDSNFN 590 (606)
Q Consensus 513 ~~~~~ef~~~~~~C~~~~~~~c~y~~g~~~l~~~~g~~~g~~~~~~~~~v~g~~y~~~~~~~~~~~~~~~~~--wr~n~g 590 (606)
+++ .| ..| . + +..+.|++|| .+|| |..+|. |+ |+|
T Consensus 732 ~~~---------~~-----~~~----------~------~------~~~~~G~~~L-~~~g-----~~~~~~~~w~-~~~ 768 (1470)
T PLN03140 732 PRW---------MN-----KMA----------S------D------NSTRLGTAVL-NIFD-----VFTDKNWYWI-GVG 768 (1470)
T ss_pred ccc---------cC-----ccc----------C------C------CCcccHHHHH-HhcC-----cCccccchhh-hHH
Confidence 221 11 011 1 1 1257899999 6789 887766 99 999
Q ss_pred HHHHHHHHHHhh
Q psy10223 591 MTITLSFAFTLM 602 (606)
Q Consensus 591 i~~~~~~~~~~~ 602 (606)
|+++|+++|.++
T Consensus 769 iL~~~~v~f~~l 780 (1470)
T PLN03140 769 ALLGFTILFNVL 780 (1470)
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
No 6
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=2.8e-85 Score=745.86 Aligned_cols=498 Identities=24% Similarity=0.344 Sum_probs=384.5
Q ss_pred CccEEEEE-EEEeeccccc-Cc-------------eeeeeeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHH
Q psy10223 9 EEEYYLKI-DLQHPALVET-GS-------------CFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVI 73 (606)
Q Consensus 9 ~~~~~~~~-~~~~~~~~~~-~~-------------~~~~~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L 73 (606)
...++++. |+.+.+.... .. ..++....++++++|+|+|+++++||+++|+||||||||||||+|
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iL 114 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNAL 114 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHH
Confidence 44567777 8888765432 00 011112233457899999999999999999999999999999999
Q ss_pred HcCCCCC-CeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch
Q psy10223 74 SRRSSGT-TRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN 152 (606)
Q Consensus 74 ~g~~~~~-~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 152 (606)
+|+.++. .+|+|.+||+++.. ..++.++||+|++.+++.+||+||+.+++.++.+...++++++++++++++.+||.+
T Consensus 115 aG~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 193 (659)
T PLN03211 115 AGRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK 193 (659)
T ss_pred hCCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh
Confidence 9998632 48999999998754 345679999999999999999999999887665544566666778999999999998
Q ss_pred hhcc-----cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHh
Q psy10223 153 VARR-----NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLP 227 (606)
Q Consensus 153 ~~~~-----~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~ 227 (606)
+.|+ .+++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .|+|||+++|||..++.+
T Consensus 194 ~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~ 272 (659)
T PLN03211 194 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQ 272 (659)
T ss_pred hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHH
Confidence 7754 4678999999999999999999999999999999999999999999999986 589999999999878999
Q ss_pred cCCeEEEEcCCeEEEecChhHHHHHHHHcCCCCCCCCCchhhhhhcccccchhhH-HHhhcHHHHHHHHHHHHHcCC---
Q psy10223 228 FLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLCLSTVDRRSRE-RFIESNNQIVALVEKFKIEGA--- 303 (606)
Q Consensus 228 ~~D~v~vL~~G~~v~~G~~~~~~~~f~~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~--- 303 (606)
+||++++|++|++++.|+++++++||+++|++||++.||+||++++...+.+... ...+.....+.+.+.+.....
T Consensus 273 ~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (659)
T PLN03211 273 MFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKV 352 (659)
T ss_pred hhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccHHH
Confidence 9999999999999999999999999999999999999999999998654321100 000000000111111111000
Q ss_pred --------ccccccccc----cccCCCCCCcccccccccc---ccc-----cCCc-c------------------hHhhH
Q psy10223 304 --------PYRKCASSV----IMDHGNSTIPSLTSHKMPL---VNF-----SKPG-G------------------FQDYQ 344 (606)
Q Consensus 304 --------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~-----~~~~-~------------------~~~~~ 344 (606)
..+...... .................++ ..+ +.+. . ++.+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i~~~ll~G~lf~~~~~ 432 (659)
T PLN03211 353 KAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDF 432 (659)
T ss_pred HHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 000000000 0000000000000000000 000 0000 0 01345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccC
Q psy10223 345 WSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLS 424 (606)
Q Consensus 345 ~~~~~r~g~lf~~~~~~~f~~~~~~i~~~~~~R~i~~re~~~~~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~ 424 (606)
.++++|.|++|+++.+..+.+++.++..|+.||+||+||+.+++|++++|++|++++|+|+.++.+++|++|+|||+||+
T Consensus 433 ~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~ 512 (659)
T PLN03211 433 RDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLK 512 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCc
Confidence 67899999999998888888888999999999999999999999999999999999999999999999999999999998
Q ss_pred ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHH
Q psy10223 425 TS-TDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGA 503 (606)
Q Consensus 425 ~~-~~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~e 503 (606)
.+ .+||+|+++++++.++++++++.+++++++...|+.+. +++++++++|+||+++ +||+||+|++|+||++||||
T Consensus 513 ~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~-~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~e 589 (659)
T PLN03211 513 PELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIV-TVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYR 589 (659)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHH
Confidence 65 45777778889999999999999999988766555544 4557788999999997 79999999999999999999
Q ss_pred HHHHHhcc
Q psy10223 504 FLSRQMFG 511 (606)
Q Consensus 504 al~~nef~ 511 (606)
+++.|||+
T Consensus 590 al~~nef~ 597 (659)
T PLN03211 590 LLINVQYG 597 (659)
T ss_pred HHHHHhcC
Confidence 99999997
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.1e-83 Score=778.34 Aligned_cols=540 Identities=20% Similarity=0.357 Sum_probs=415.1
Q ss_pred EEEE-EEEeecccccCceeeeeeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-CCeeEEEECCE
Q psy10223 13 YLKI-DLQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-TTRGEIILDGT 90 (606)
Q Consensus 13 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~~~G~I~~~G~ 90 (606)
++.. |+.+.+..+... ++.-...+++++|+|||+.++|||+++|+||||||||||||+|+|+.++ +.+|+|.+||.
T Consensus 867 ~~~~~~v~y~v~~~~~~--~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~ 944 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEM--KEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF 944 (1470)
T ss_pred eEEEEEEEEEEccCccc--cccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCc
Confidence 4555 777765432211 1110112345799999999999999999999999999999999999752 46899999998
Q ss_pred eCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccC-----CCCCHHH
Q psy10223 91 PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI-----SELTPSE 165 (606)
Q Consensus 91 ~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v-----~~LSgGe 165 (606)
+.+...+++.+||++|+|.++|.+||+|||.|++.++.+...+++++.++++++++.++|.++.|+.+ ++|||||
T Consensus 945 ~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGe 1024 (1470)
T PLN03140 945 PKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQ 1024 (1470)
T ss_pred cCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHH
Confidence 87644567789999999999999999999999988776555666666778999999999999999986 6899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC-CeEEEec
Q psy10223 166 HRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL-GDLIYAG 244 (606)
Q Consensus 166 rqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~-G~~v~~G 244 (606)
||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|||+.++++.||++++|++ |+++|+|
T Consensus 1025 rkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999998788999999999996 8999999
Q ss_pred Ch----hHHHHHHHHc-CCC-CCCCCCchhhhhhcccccch------hhHHHhhcHH--HHHHHHHHHHHcCCccccccc
Q psy10223 245 PT----RLMLEYFRSI-GFP-CPELENPLMYYLCLSTVDRR------SRERFIESNN--QIVALVEKFKIEGAPYRKCAS 310 (606)
Q Consensus 245 ~~----~~~~~~f~~~-G~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~ 310 (606)
++ +++.+||+++ |++ ||+..||+||.+++...+.. ..+.|.++.. +..++.++..... . . ..
T Consensus 1104 ~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~-~--~-~~ 1179 (1470)
T PLN03140 1104 PLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPP-P--G-AS 1179 (1470)
T ss_pred CcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCC-C--C-cc
Confidence 96 6899999998 664 99999999999998654321 1122222211 1111111110000 0 0 00
Q ss_pred cccccCCCCCCccccccccc-----cccccCCc---------------------chH---hhHHHHHHHHHHHHHHHHHH
Q psy10223 311 SVIMDHGNSTIPSLTSHKMP-----LVNFSKPG---------------------GFQ---DYQWSFMSRNGLIFSSISGS 361 (606)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---------------------~~~---~~~~~~~~r~g~lf~~~~~~ 361 (606)
+... ......++..+...- +...+.+. ... ....++++|.|++|+++.+.
T Consensus 1180 ~~~~-~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~ 1258 (1470)
T PLN03140 1180 DLYF-ATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFV 1258 (1470)
T ss_pred cccc-CccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHH
Confidence 0000 000000000000000 00000110 000 12356788899999988877
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCch-hHHHHHHHHHHHHH
Q psy10223 362 YFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTS-TDLFQFSLMLWSCF 440 (606)
Q Consensus 362 ~f~~~~~~i~~~~~~R~i~~re~~~~~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~-~~~f~~~l~~~~~~ 440 (606)
.+..+...++.+..||+||+||+.+++|++++|++|++++|+|+.++++++|++|+|||+||+.+ ..||+++++++++.
T Consensus 1259 ~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~ 1338 (1470)
T PLN03140 1259 GINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSF 1338 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Confidence 77666666778889999999999999999999999999999999999999999999999999765 45777778888888
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHHHHhccCcccccccC
Q psy10223 441 LFAEYLSVALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGRLRNMYS 520 (606)
Q Consensus 441 ~~~~s~~~~~~~~~~~~~~aa~~~~~~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~nef~~~~~~~ef~ 520 (606)
++++++++++++++++...|+...+.+ ..++++|+||++|+++||+||+|++|+||++|++++|+.|||+
T Consensus 1339 ~~~~~~g~~~~a~~p~~~~A~~~~~~~-~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~--------- 1408 (1470)
T PLN03140 1339 LYFTYYGMMTVSLTPNQQVAAIFAAAF-YGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYG--------- 1408 (1470)
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHH-HHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhC---------
Confidence 999999999999999877766665554 5678899999999999999999999999999999999888876
Q ss_pred CCccccCCCCCCCCccCChhHHHhhhcCCCCCcccccceeeechhhhhhhhhCCCCCCcccccccccchhHHHHHHHHHH
Q psy10223 521 DKYSNCTIPHPFGCRYTDGASFLSERYGHETGDFSFFITKYTDGASFLSERYGHETGDFSLSDVLDSNFNMTITLSFAFT 600 (606)
Q Consensus 521 ~~~~~C~~~~~~~c~y~~g~~~l~~~~g~~~g~~~~~~~~~v~g~~y~~~~~~~~~~~~~~~~~wr~n~gi~~~~~~~~~ 600 (606)
+.+.+|. |+ |..++ ..|++|+...|| |+++|+|+ |++|+++|+++|.
T Consensus 1409 ~~~~~~~------~~------------~~~~~---------~~~~~~~~~~~g-----~~~~~~~~-~~~il~~~~~~f~ 1455 (1470)
T PLN03140 1409 DVEDTIK------VP------------GGAPD---------PTIKWYIQDHYG-----YDPDFMGP-VAAVLVGFTVFFA 1455 (1470)
T ss_pred CCCCccc------CC------------CCCCC---------CcHHHHHHHhcC-----cCcccccc-hhhhHHHHHHHHH
Confidence 4444441 11 11111 247899999999 99999999 9999999999998
Q ss_pred hhc
Q psy10223 601 LMD 603 (606)
Q Consensus 601 ~~~ 603 (606)
++.
T Consensus 1456 ~~~ 1458 (1470)
T PLN03140 1456 FIF 1458 (1470)
T ss_pred HHH
Confidence 763
No 8
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.1e-81 Score=762.90 Aligned_cols=541 Identities=21% Similarity=0.303 Sum_probs=409.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC--CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++.+|+|||+++++||+++|+||||||||||||+|+|+.++ +.+|+|.+||++++. .+|+.++|++|++.+++.+||
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCH
Confidence 46899999999999999999999999999999999999752 467999999999853 467889999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCC----CCCHHHHHHHHHHHHHhhCCC-EEEEeCCCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS----ELTPSEHRRVVIGTQLVKDPV-LLLLDEPTVNL 191 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~----~LSgGerqRvsIa~aL~~~p~-llllDEPTsgL 191 (606)
+|||.|++.++.+...+++++.++++++++.++|.+++|+.++ +|||||||||+||++|+.+|+ ||+|||||+||
T Consensus 854 ~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgL 933 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGL 933 (1394)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCC
Confidence 9999999988765556666777889999999999999999987 899999999999999999997 99999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCC-eEEEecCh----hHHHHHHHHcCC-CCCCCCC
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLG-DLIYAGPT----RLMLEYFRSIGF-PCPELEN 265 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G-~~v~~G~~----~~~~~~f~~~G~-~~~~~~~ 265 (606)
|+.++..+++.|+++++ .|+|||+++|||+..+++.||++++|++| +++|+|++ +++.+||++.|+ +||+..|
T Consensus 934 D~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~N 1012 (1394)
T TIGR00956 934 DSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDAN 1012 (1394)
T ss_pred CHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCC
Confidence 99999999999999986 58999999999987788999999999997 99999997 578999999996 9999999
Q ss_pred chhhhhhcccccch------hhHHHhhcHH--HHHHHHHHHHHcCCccccccccccccCCCCCCcccccccc-----ccc
Q psy10223 266 PLMYYLCLSTVDRR------SRERFIESNN--QIVALVEKFKIEGAPYRKCASSVIMDHGNSTIPSLTSHKM-----PLV 332 (606)
Q Consensus 266 ~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 332 (606)
|+||++++...+.. ..+.|.++.. +..++.+...... .......+. ........++..+... -+.
T Consensus 1013 pAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~s~~~q~~~l~~R~~~~ 1090 (1394)
T TIGR00956 1013 PAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAEL-SKAEDDNDP-DALSKYAASLWYQFKLVLWRTFQQ 1090 (1394)
T ss_pred HHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhccc-ccCcccccc-ccccccCCCHHHHHHHHHHHHHHH
Confidence 99999987643221 1122222111 0111111110000 000000000 0000000000000000 000
Q ss_pred cccCCc---------------------chHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHhcCCccc
Q psy10223 333 NFSKPG---------------------GFQDYQWSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRY-YQEAQEGLYS 390 (606)
Q Consensus 333 ~~~~~~---------------------~~~~~~~~~~~r~g~lf~~~~~~~f~~~~~~i~~~~~~R~i~-~re~~~~~Y~ 390 (606)
..+.+. ...+++.++++|.|++|+.+.+..+. ....+..++.+|+++ +||+.+++|+
T Consensus 1091 ~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~ 1169 (1394)
T TIGR00956 1091 YWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFS 1169 (1394)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCC
Confidence 001110 01146778999999999877655443 345677788999886 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchh--------HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Q psy10223 391 GPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTST--------DLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAV 462 (606)
Q Consensus 391 ~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~--------~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~ 462 (606)
+++|++|++++|+|+.++.+++|.+|+|||+|++.++ +||+|+++++++.+++.+++.++++++++...|+.
T Consensus 1170 ~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~ 1249 (1394)
T TIGR00956 1170 WLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAV 1249 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHH
Confidence 9999999999999999999999999999999997543 27778888888889999999999999998766655
Q ss_pred HHHHHHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHHHHhccCcccccccCCCccccCCC--------CCCCC
Q psy10223 463 VSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGRLRNMYSDKYSNCTIP--------HPFGC 534 (606)
Q Consensus 463 ~~~~~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~nef~~~~~~~ef~~~~~~C~~~--------~~~~c 534 (606)
+.+ +++.++++|+||++|+++||+||+|++|+||++|++++++.|||. +.++.|... ....|
T Consensus 1250 ~~~-~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~---------~~~~~C~~~e~~~f~pp~~~tC 1319 (1394)
T TIGR00956 1250 LAS-LLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLA---------DVPVTCKVKELLTFNPPSGQTC 1319 (1394)
T ss_pred HHH-HHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcC---------CCeeecCccccceecCCCCCCH
Confidence 555 446778999999999999999999999999999999999888877 555667431 12345
Q ss_pred ccCChhHHHhhhcCCCCCcccccc---eeeechhhhhhhhhCCCCCCcccccccccchhHHHHHHHHHHhh
Q psy10223 535 RYTDGASFLSERYGHETGDFSFFI---TKYTDGASFLSERYGHETGDFSLSDVLDSNFNMTITLSFAFTLM 602 (606)
Q Consensus 535 ~y~~g~~~l~~~~g~~~g~~~~~~---~~~v~g~~y~~~~~~~~~~~~~~~~~wr~n~gi~~~~~~~~~~~ 602 (606)
.- -...++...-|+-.+...... =.+.+|++||+ .++ ++++|.|| |+||+++|.++++++
T Consensus 1320 ~~-y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~-~~~-----~~~~~~w~-~~~i~~~~~~~~~~~ 1382 (1394)
T TIGR00956 1320 GE-YMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLE-PIS-----SKYSGRWR-NFGIFIAFIFFNIIA 1382 (1394)
T ss_pred HH-HHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHH-HcC-----Cccccccc-chhhhhHHHHHHHHH
Confidence 30 012333222222211000000 12569999997 478 99999999 999999999998654
No 9
>KOG0065|consensus
Probab=100.00 E-value=7.1e-81 Score=715.52 Aligned_cols=527 Identities=24% Similarity=0.385 Sum_probs=410.1
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC-CCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS-SGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~-~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++++|+||++.++||-++||||+|||||||||++||||. .|..+|+|++||.+.+++.+++.+|||.|+|.|.|++||
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 6789999999999999999999999999999999999995 457789999999999877899999999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCC----CCCHHHHHHHHHHHHHhhCC-CEEEEeCCCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS----ELTPSEHRRVVIGTQLVKDP-VLLLLDEPTVNL 191 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~----~LSgGerqRvsIa~aL~~~p-~llllDEPTsgL 191 (606)
+|.|.|+|.+|++..++.+++.+.++++++.++|++++|..|+ |||..||||++||.+|+.+| .||+||||||||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL 961 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL 961 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence 9999999999999999999988999999999999999998875 59999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC-CeEEEecChh----HHHHHHHHcC-CCCCCCCC
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL-GDLIYAGPTR----LMLEYFRSIG-FPCPELEN 265 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~-G~~v~~G~~~----~~~~~f~~~G-~~~~~~~~ 265 (606)
|+.+|..+++.+|++++ .|+||+||+|||+.++++.||++++|++ |++||+||.. .+++||++.| .+||+..|
T Consensus 962 DsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~N 1040 (1391)
T KOG0065|consen 962 DSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDEN 1040 (1391)
T ss_pred cHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCC
Confidence 99999999999999997 6999999999999999999999999987 6899999975 4567999986 89999999
Q ss_pred chhhhhhccccc------chhhHHHhhcH--HHHHHHHHHHHHcCCccccccccccccCCCCCCcccccccccc------
Q psy10223 266 PLMYYLCLSTVD------RRSRERFIESN--NQIVALVEKFKIEGAPYRKCASSVIMDHGNSTIPSLTSHKMPL------ 331 (606)
Q Consensus 266 ~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 331 (606)
||+|.++++... ....+-|.++. .++.++++...+..+. ...+ .....++.++...+.
T Consensus 1041 PA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~---~~~~-----~~~~~~fa~s~~~Q~k~~l~R 1112 (1391)
T KOG0065|consen 1041 PAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPG---FSTD-----LEFKTRFAQSLWYQFKLCLWR 1112 (1391)
T ss_pred hHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCcc---CCcc-----cccccccchhHHHHHHHHHHH
Confidence 999999976432 22233333332 2333333332211110 0000 000000111110000
Q ss_pred ---ccccCCc---------------------chHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCC
Q psy10223 332 ---VNFSKPG---------------------GFQDYQWSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEG 387 (606)
Q Consensus 332 ---~~~~~~~---------------------~~~~~~~~~~~r~g~lf~~~~~~~f~~~~~~i~~~~~~R~i~~re~~~~ 387 (606)
..++.|. .......+++++.|++|.++.+..-...-........+|.+++||+.++
T Consensus 1113 q~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~ 1192 (1391)
T KOG0065|consen 1113 QFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASN 1192 (1391)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccC
Confidence 0011110 0004566677777777765544322211112233467888889999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Q psy10223 388 LYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTST-DLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSY 466 (606)
Q Consensus 388 ~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~-~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~ 466 (606)
+||+.+|++|++++|+|+.++++++|.+++|+|+|+...+ .+++|++..++..++...+++++.+++|+...|+++.+.
T Consensus 1193 mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~ 1272 (1391)
T KOG0065|consen 1193 MYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASL 1272 (1391)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 9999999999999999999999999999999999997654 566666777777888889999999999999999988887
Q ss_pred HHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHHHHhccCcccccccCCCccccCCC----CCCCCccCChhHH
Q psy10223 467 INIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGRLRNMYSDKYSNCTIP----HPFGCRYTDGASF 542 (606)
Q Consensus 467 ~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~nef~~~~~~~ef~~~~~~C~~~----~~~~c~y~~g~~~ 542 (606)
+. .++.+|+|+++|++.||.||+|+||+||+.|..++|...+++ +.+..|... ....|+. +-.++
T Consensus 1273 ~~-s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~---------d~~v~c~~~e~~~~~pp~g~-tcge~ 1341 (1391)
T KOG0065|consen 1273 FF-SFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLG---------DVEVTCEDSEMNYFDPPSGQ-TCGEF 1341 (1391)
T ss_pred HH-HHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhC---------CCceeeecCCccccCCCCCc-CHHHH
Confidence 64 567899999999999999999999999999999999887766 555667321 1122332 23466
Q ss_pred HhhhcCCCCCcccccce-------eeechhhhhhhhhCCCCCCcccccccccchhH
Q psy10223 543 LSERYGHETGDFSFFIT-------KYTDGASFLSERYGHETGDFSLSDVLDSNFNM 591 (606)
Q Consensus 543 l~~~~g~~~g~~~~~~~-------~~v~g~~y~~~~~~~~~~~~~~~~~wr~n~gi 591 (606)
+...+|...|-..|... .+-.+++|| .+|+ .+|.|.|| ||||
T Consensus 1342 m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l-~~f~-----~~y~~~wr-nfgi 1390 (1391)
T KOG0065|consen 1342 MEDFFGEGTGYLHNPLATTACVYCAYTVADAFL-AAFN-----IKYLNFWR-NFGI 1390 (1391)
T ss_pred HHHHhccCcceeccCcceeEEEEeeeehHHHHH-HHHH-----HHHHHHHH-hhcc
Confidence 66777733332211111 144688888 5599 99999999 9998
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-51 Score=395.55 Aligned_cols=208 Identities=26% Similarity=0.422 Sum_probs=191.7
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~ 112 (606)
++..++|+|||++|++||+++|+||||||||||||||.++.. +++|+|.++|.++.. ...|+++|+|+|+.++||
T Consensus 12 fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~-~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 12 FGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE-PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred eCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC-CCCceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 345789999999999999999999999999999999999987 889999999987642 347899999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
++||.||+..+... -.+.++++.++++.++|+++||.+.+|.++.+|||||||||+|||||+.+|+++++|||||+||
T Consensus 91 HlTvleNv~lap~~--v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALD 168 (240)
T COG1126 91 HLTVLENVTLAPVK--VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALD 168 (240)
T ss_pred cchHHHHHHhhhHH--HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCC
Confidence 99999999998653 2357888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|....++.+.++++|+ .|.|.|+++|. ...+.+.+|||++|++|+++..|++++.
T Consensus 169 PElv~EVL~vm~~LA~-eGmTMivVTHE-M~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 169 PELVGEVLDVMKDLAE-EGMTMIIVTHE-MGFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHHHHHHHHHHHH-cCCeEEEEech-hHHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 9999999999999997 58999999996 5689999999999999999999988876
No 11
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.1e-48 Score=405.97 Aligned_cols=214 Identities=31% Similarity=0.461 Sum_probs=194.8
Q ss_pred ccc-ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCC
Q psy10223 36 NIQ-TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 36 ~~~-~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~ 112 (606)
.++ .+.+|+||||++++||++||+||||||||||||+|+|+.+ +++|+|.++|.+... ...++++||++|++.++|
T Consensus 13 ~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~ 91 (293)
T COG1131 13 KYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYP 91 (293)
T ss_pred EeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEEcCEeCccCHHHHHhheEEEccCCCCCc
Confidence 344 4789999999999999999999999999999999999998 799999999998764 357788999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+||+|+|.|.+.++... ....+++++++++.+||.+..++++++||+||||||+||.||+++|+++||||||+|||
T Consensus 92 ~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLD 168 (293)
T COG1131 92 ELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLD 168 (293)
T ss_pred cccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCC
Confidence 999999999999886432 24456789999999999987789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFR 254 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~ 254 (606)
|.++.++++.|+++++++++||++|+|++ +++.++||+|++|++|++++.|+++++...+.
T Consensus 169 p~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 169 PESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229 (293)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhc
Confidence 99999999999999987668999999976 58999999999999999999999999777653
No 12
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.6e-48 Score=376.38 Aligned_cols=212 Identities=28% Similarity=0.431 Sum_probs=195.9
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTD 109 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~ 109 (606)
+.+++.|++|||++|++||+++|+||||||||||||+|.|+++ |++|+|+++|.++.. ...|+++|+++|...
T Consensus 17 ~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~-P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 17 SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR-PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred ecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC-CCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 4556899999999999999999999999999999999999998 899999999998743 146789999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
+|..|||.||+.|..+-+ ...+++..++.+..-|+.+||... ++.++.+||||||||++||||++.+|+++++||||
T Consensus 96 LFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPt 173 (263)
T COG1127 96 LFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPT 173 (263)
T ss_pred cccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCC
Confidence 999999999999987743 346788888888889999999987 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+||||.++..+.++++++.+..|.|+++++|+- ++++..|||+++|.+|+++..|+++++.+
T Consensus 174 sGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 174 SGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred CCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999974 68999999999999999999999999864
No 13
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-48 Score=390.44 Aligned_cols=207 Identities=28% Similarity=0.447 Sum_probs=194.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~~~~ 112 (606)
...+|+|||++|++||+.+|+|+||||||||+|+|.++.. |++|+|.++|.++.. +..|++||+++|+..++.
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~-PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLs 96 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER-PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLS 96 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC-CCCceEEEcCEecccCChHHHHHHHhhccEEeccccccc
Confidence 3579999999999999999999999999999999999987 899999999988753 247889999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
..||.||+.|++++. +.++++.++|+.++|+.+||++..++++.+|||||||||+|||||+.+|+||+.|||||+||
T Consensus 97 srTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALD 173 (339)
T COG1135 97 SRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALD 173 (339)
T ss_pred cchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCC
Confidence 999999999999865 46788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|.++..++++|+++.++.|.||++++|+ ++-+.++||||.||++|++++.|+..++.
T Consensus 174 P~TT~sIL~LL~~In~~lglTIvlITHE-m~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 174 PETTQSILELLKDINRELGLTIVLITHE-MEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 9999999999999999999999999997 46789999999999999999999988764
No 14
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7.9e-48 Score=376.31 Aligned_cols=217 Identities=27% Similarity=0.434 Sum_probs=200.2
Q ss_pred eeeeeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcC
Q psy10223 30 FQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNH 106 (606)
Q Consensus 30 ~~~~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q 106 (606)
++++.+.+.++.+++|+|++|++||+++++|||||||||+||+|.++.. |++|+|.+||++++. ..+|++||||-|
T Consensus 4 ~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie-pt~G~I~i~g~~i~~~d~~~LRr~IGYviQ 82 (309)
T COG1125 4 FENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE-PTSGEILIDGEDISDLDPVELRRKIGYVIQ 82 (309)
T ss_pred eeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC-CCCceEEECCeecccCCHHHHHHhhhhhhh
Confidence 4444556667899999999999999999999999999999999999988 899999999999864 358999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch--hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 107 RTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN--VARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 107 ~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
.-.+||++||.||+.+-..+. +.++++.+++++++|+.+||++ .+++++++|||||+|||.+||||+.+|+++++
T Consensus 83 qigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLM 159 (309)
T COG1125 83 QIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLM 159 (309)
T ss_pred hcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEee
Confidence 999999999999999988764 4567788899999999999974 89999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+++|||.++.++-+.++++.++.|+|+|+++|+ .+++.+++|||++|++|+++-+++|++++.
T Consensus 160 DEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHD-idEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 160 DEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD-IDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred cCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecC-HHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999999996 679999999999999999999999998864
No 15
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.5e-47 Score=384.05 Aligned_cols=214 Identities=25% Similarity=0.396 Sum_probs=191.2
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~ 112 (606)
.++++.+|+|+|+++++||+++|+||||||||||||+|+|.++ +.+|+|.++|+++.. +.+.+.++|+||.....+
T Consensus 11 ~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~ 89 (258)
T COG1120 11 GYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89 (258)
T ss_pred EECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCC
Confidence 4557899999999999999999999999999999999999998 789999999998754 457789999999998888
Q ss_pred CCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
.+||.|.+.++..-+.. .....++.++.++++|+.+|+.+.+++.+.+|||||||||.||+||+++|++|+|||||+.|
T Consensus 90 ~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~L 169 (258)
T COG1120 90 GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHL 169 (258)
T ss_pred CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCcccc
Confidence 99999999887542111 11123345567999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|...+.++++++++++++.|+|+|+++|++ +.+.++||++++|++|+++..|++++++.
T Consensus 170 Di~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 170 DIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 999999999999999988899999999976 57999999999999999999999988753
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.3e-47 Score=371.81 Aligned_cols=195 Identities=28% Similarity=0.491 Sum_probs=176.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------cc-ccCeEEEEcCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QL-FQTTCGYVNHRTDLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~-~~~~i~yv~q~~~~~~ 112 (606)
..+|+++|++|++||+++|+|||||||||||++|+|+.+ |++|+|.++|.++.. .. .++.+|||+|+..+.|
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~ 96 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLP 96 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCC
Confidence 579999999999999999999999999999999999998 699999999988753 12 3567999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhc-ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR-RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
.+||.||+.+++.+. ..+....+++++++++.+||.+..+ +++.+|||||||||+|||||+.+|++++.||||.+|
T Consensus 97 ~ltv~ENv~lpl~~~---~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnL 173 (226)
T COG1136 97 DLTVLENVELPLLIA---GKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNL 173 (226)
T ss_pred CCCHHHHHHhHHHHc---CCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccC
Confidence 999999999987653 2333355677889999999997766 889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
|+.++.+++++|++++++.|+|+|+++|+| ++.+.|||++.|.+|++
T Consensus 174 D~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 174 DSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred ChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 999999999999999988899999999986 68999999999999983
No 17
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-47 Score=373.45 Aligned_cols=193 Identities=31% Similarity=0.439 Sum_probs=179.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
...+|+|+|++|++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++. .....++||+|++.++|++||.|
T Consensus 15 ~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~-p~~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~~ 91 (248)
T COG1116 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK-PTSGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVLD 91 (248)
T ss_pred ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCcccC--CCCCCEEEEeccCcccchhhHHh
Confidence 3689999999999999999999999999999999999998 88999999999883 34678999999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.++...+ ..++.+.+++++++|+.+||.+..|+++++|||||||||+|||||+.+|++|+||||+++||+.|+.+
T Consensus 92 NV~l~l~~~---~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~ 168 (248)
T COG1116 92 NVALGLELR---GKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREE 168 (248)
T ss_pred hheehhhcc---ccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHH
Confidence 999998864 24566677799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCC
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLG 238 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G 238 (606)
+.+.|.++.++.++|++++||+. +|+..++|||++|.++
T Consensus 169 lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 169 LQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 99999999999999999999975 6889999999999984
No 18
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-47 Score=368.63 Aligned_cols=214 Identities=24% Similarity=0.422 Sum_probs=191.0
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTDLI 111 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~~~ 111 (606)
+++++|+|||++|++||+++|+||||||||||||+|+|+.. +.+|+|.++|.++.. +.+|+++||++|++.+.
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d-~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv 93 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD-PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLV 93 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC-CCcceEEecccchhccchHHHHHHHHhceeEeccCCcc
Confidence 45789999999999999999999999999999999999887 789999999987643 24688999999999999
Q ss_pred CCCCHHHHHHHHHHccCCC-----CCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 112 PSLTVEQTLYYAAHLSIGP-----QVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
|.+||.+|+..+..-+.+. +...++.+.++-++|+++|+.+.+.++...|||||+|||+|||||+++|++++.||
T Consensus 94 ~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADE 173 (258)
T COG3638 94 PRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADE 173 (258)
T ss_pred cccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCC
Confidence 9999999998875422111 12234456678899999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYF 253 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f 253 (606)
|++.|||.++..+++.|++++++.|.|+|++.|+ .+-+.++|||++-|++|+++|+||++++.+.+
T Consensus 174 PvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~-vdlA~~Y~~Riigl~~G~ivfDg~~~el~~~~ 239 (258)
T COG3638 174 PVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-VDLAKKYADRIIGLKAGRIVFDGPASELTDEA 239 (258)
T ss_pred cccccChhhHHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHHhhheEecCCcEEEeCChhhhhHHH
Confidence 9999999999999999999999999999999997 46789999999999999999999999876543
No 19
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-46 Score=391.28 Aligned_cols=205 Identities=26% Similarity=0.440 Sum_probs=193.4
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
+|+|+|+++++||+++|+||||||||||||+|||+.. +++|+|.++|.+++. ...++.+++|+|+..+||+|||+||+
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~-~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Ni 96 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENI 96 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHh
Confidence 9999999999999999999999999999999999998 899999999999875 23467899999999999999999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
.|+++.+ +.++++.+++++++.+.|+|++.+|+++++|||||||||+|||||+.+|+++++|||.|+||+..+..+.
T Consensus 97 af~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr 173 (338)
T COG3839 97 AFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMR 173 (338)
T ss_pred hhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHH
Confidence 9999864 4677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
..|+++.++.|.|+|.+||+. .|+..++||+.+|++|++...|++.++.+
T Consensus 174 ~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 174 SEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 999999988899999999975 58999999999999999999999999864
No 20
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=9.9e-47 Score=393.62 Aligned_cols=211 Identities=26% Similarity=0.416 Sum_probs=195.5
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~l 114 (606)
.+++..+|+|+|++|++||+++++||||||||||||+|||+.. |++|+|.++|++++. ...++.+++|+|+-.+||+|
T Consensus 14 ~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~-p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHl 92 (352)
T COG3842 14 SFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ-PSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHM 92 (352)
T ss_pred ecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCChhhcccceeecCcccCCCC
Confidence 3446789999999999999999999999999999999999998 899999999999875 33578999999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||+||+.|+++.+ ....+++.+++++++|+.++|++.+++++.+|||||||||+|||||+.+|++|+||||.++||..
T Consensus 93 tV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~k 170 (352)
T COG3842 93 TVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAK 170 (352)
T ss_pred cHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHH
Confidence 9999999999843 23455667889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
-+.++...|+++.++.|.|.|+++|+. +++..++|||.+|++|++.-.|+++++-
T Consensus 171 LR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 171 LREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHh
Confidence 999999999999999999999999975 6899999999999999999999999884
No 21
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.7e-47 Score=377.96 Aligned_cols=211 Identities=27% Similarity=0.424 Sum_probs=192.8
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCE---eCCc-ccccCeEEEEcCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT---PMSP-QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~---~~~~-~~~~~~i~yv~q~~~~~~~ 113 (606)
+...+++|||++|+.||++|++||||||||||||+|+|+.. |+.|.|.+||+ +.+. ....++||||+|+-.+||+
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~-p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET-PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC-CCCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 34578999999999999999999999999999999999998 89999999999 5443 2235689999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
|||.||+.|+++.+ ....++.+.+.++.++|+.+.|++.+++++.+|||||||||++||||+.+|++|+||||+++||.
T Consensus 92 mtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa 170 (345)
T COG1118 92 MTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 170 (345)
T ss_pred chHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhH
Confidence 99999999999876 22345667788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.-+.++.+.|+++.++.|.|+++++|++ +++++++|||++|++|+|...|+++++.+
T Consensus 171 ~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 171 KVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 9999999999999988899999999975 68999999999999999999999999843
No 22
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-46 Score=356.19 Aligned_cols=205 Identities=27% Similarity=0.438 Sum_probs=191.3
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++||||+++.||+++|+|||||||||+||+|++++. |++|.|.++|.+... ...|++||.++.+..++..||++|
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rE 94 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARE 94 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc-CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHH
Confidence 49999999999999999999999999999999999998 899999999998743 457899999998888999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
||.|.+++. ++++.+.+.+++++.+.|+|.++.|++++++|.|+||||+|||||+++|++++|||||+|||..+...
T Consensus 95 nl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~ 171 (245)
T COG4555 95 NLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRK 171 (245)
T ss_pred HHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHH
Confidence 999999874 46777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.+.++++.+ .|++||.++| ..+++..+||+|++|++|++++.|+.+++.+
T Consensus 172 ~~dfi~q~k~-egr~viFSSH-~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 172 FHDFIKQLKN-EGRAVIFSSH-IMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHHHHHhhc-CCcEEEEecc-cHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999865 5999999988 4779999999999999999999999988765
No 23
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-45 Score=366.66 Aligned_cols=205 Identities=28% Similarity=0.477 Sum_probs=179.6
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCC---CCCCCCHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTD---LIPSLTVE 117 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~---~~~~lTV~ 117 (606)
++|+|||+++++||+++|+||||||||||+|+|.|+++ |.+|+|.+.|.+.....-+.+||||||... -|| +||+
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~-p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~ 95 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVK 95 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-CCcceEEEccccccccccCCeEEEcCcccccCCCCC-cCHH
Confidence 69999999999999999999999999999999999998 789999999998765434578999999642 344 7999
Q ss_pred HHHHHHHHccC--CCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 118 QTLYYAAHLSI--GPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 118 e~l~f~~~~~~--~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|.+..+...+. .+..++ +.+++++++|+.+|+.+.+|+.+++|||||+|||-|||||+++|++|+|||||+|+|+.+
T Consensus 96 d~V~~g~~~~~g~~~~~~~-~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~ 174 (254)
T COG1121 96 DVVLLGRYGKKGWFRRLNK-KDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAG 174 (254)
T ss_pred HHHHccCcccccccccccH-HHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHH
Confidence 99988743221 112233 346889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.+++++|+++.++ |+||++++|+. ..+.++||+|+.|+ +++++.|+++++.+
T Consensus 175 ~~~i~~lL~~l~~e-g~tIl~vtHDL-~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 175 QKEIYDLLKELRQE-GKTVLMVTHDL-GLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEeCCc-HHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 99999999999987 99999998865 58999999999995 67889999998754
No 24
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-45 Score=387.07 Aligned_cols=207 Identities=22% Similarity=0.376 Sum_probs=189.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++.. ...++.++||+|+..+||++||+
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER-ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 3579999999999999999999999999999999999988 789999999998753 12357899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.|+.+.+ ..++.+.+++++++++.+||.+..++++++|||||||||+|||||+.+|++++|||||++||+.++.
T Consensus 95 eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~ 171 (356)
T PRK11650 95 ENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRV 171 (356)
T ss_pred HHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 9999987632 2455566678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++.+.|+++.++.|.|+|+++|++ +++.+++|++++|++|+++..|+++++.
T Consensus 172 ~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 172 QMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 999999999877789999999976 5799999999999999999999998874
No 25
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=9.3e-45 Score=385.67 Aligned_cols=208 Identities=26% Similarity=0.399 Sum_probs=190.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ...++.++|++|+..+||++||+
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~-p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (353)
T TIGR03265 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER-QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVA 94 (353)
T ss_pred CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHH
Confidence 4579999999999999999999999999999999999987 789999999998753 22457899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.|+.+.+ ..++.+.+++++++++.++|++..++++++|||||||||+|||||+.+|++++|||||++||+.++.
T Consensus 95 eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~ 171 (353)
T TIGR03265 95 DNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVRE 171 (353)
T ss_pred HHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 9999987642 3455666788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
++.+.|+++.++.|.|+|+++|++ +++.+++||+++|++|+++..|+++++.+
T Consensus 172 ~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 172 HLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999877789999999976 58999999999999999999999988753
No 26
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=9.6e-45 Score=379.24 Aligned_cols=207 Identities=28% Similarity=0.422 Sum_probs=187.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++.+|+|||++|++||+++|+||||||||||+|+|+|+.+ +++|+|.++|.++.. ...++.+||++|++.+++.+||
T Consensus 19 ~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~-p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv 97 (306)
T PRK13537 19 DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH-PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTV 97 (306)
T ss_pred CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcH
Confidence 4679999999999999999999999999999999999988 789999999998753 2357789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.+.+..+ +.+..+..++++++++.++|.+..++++++|||||||||+||+||+++|++++|||||+|||+.++
T Consensus 98 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~ 174 (306)
T PRK13537 98 RENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQAR 174 (306)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHH
Confidence 99999876543 234445566788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.++.+.|+++++ .|+|||+++|+. +++.++||+|++|++|++++.|+++++.+
T Consensus 175 ~~l~~~l~~l~~-~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 175 HLMWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999975 489999999975 58999999999999999999999998864
No 27
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-44 Score=364.23 Aligned_cols=208 Identities=27% Similarity=0.420 Sum_probs=184.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~~~~ 112 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (235)
T cd03261 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFD 90 (235)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccChhhHHHHhcceEEEccCcccCC
Confidence 4579999999999999999999999999999999999987 789999999988642 234678999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+||.||+.+..... ...++.+..+++.++++.+++.+..++++++|||||||||+||+||+.+|++++|||||+|||
T Consensus 91 ~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 168 (235)
T cd03261 91 SLTVFENVAFPLREH--TRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLD 168 (235)
T ss_pred CCcHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCC
Confidence 999999998875422 123444456678899999999998999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+.++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 169 ~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 169 PIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 99999999999999765588999999975 4788999999999999999999987653
No 28
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.3e-44 Score=380.49 Aligned_cols=206 Identities=26% Similarity=0.398 Sum_probs=187.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---c---cccCeEEEEcCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---Q---LFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~---~~~~~i~yv~q~~~~~~~ 113 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++.. . ..|+.++|++|+..+++.
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~ 96 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccccc
Confidence 579999999999999999999999999999999999988 789999999998753 1 246789999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+||.||+.++.... ..++.+.++++.++++.+||.+..|+++++|||||||||+|||||+.+|++|++||||++||+
T Consensus 97 ~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~ 173 (343)
T TIGR02314 97 RTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173 (343)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 99999999877532 235556677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++..+++.|++++++.|.|+|+++|+. +.+.++||+|++|++|++++.|+++++.
T Consensus 174 ~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 174 ATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999876789999999974 5788999999999999999999988764
No 29
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-44 Score=382.38 Aligned_cols=207 Identities=20% Similarity=0.405 Sum_probs=189.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-cccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-LFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++... ..++.++|++|+..+||++||.
T Consensus 18 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~ 96 (351)
T PRK11432 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK-PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLG 96 (351)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHH
Confidence 3579999999999999999999999999999999999998 7899999999987532 2357899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.|+.+.+ ..++.+.+++++++++.++|.+..+++++.|||||||||+|||||+.+|++++|||||+|||+.++.
T Consensus 97 eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~ 173 (351)
T PRK11432 97 ENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRR 173 (351)
T ss_pred HHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHH
Confidence 9999987643 2455666788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++.+.|+++.++.|.|+|+++|++ +++.+++||+++|++|+++..|+++++.
T Consensus 174 ~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 174 SMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999877789999999976 5799999999999999999999998874
No 30
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=4.4e-44 Score=381.24 Aligned_cols=208 Identities=22% Similarity=0.364 Sum_probs=188.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCe--eEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR--GEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~--G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++ |+|.++|.++.. ...++.++|++|+..++|++|
T Consensus 17 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~t 95 (362)
T TIGR03258 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-AAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLK 95 (362)
T ss_pred CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCc
Confidence 4579999999999999999999999999999999999987 788 999999998753 123568999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|+||+.|+.+.+ ..++.+.+++++++++.++|++..++++++|||||||||+|||||+.+|++++|||||+|||+.+
T Consensus 96 v~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~ 172 (362)
T TIGR03258 96 VEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANI 172 (362)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 999999987643 34555667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 196 TYLIVSMLSSYAKRK-SRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~-g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.++.+.|+++.++. |.|+|+++|++ +++..++|+|++|++|+++..|+++++.+
T Consensus 173 r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 173 RANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999998765 78999999975 57899999999999999999999988753
No 31
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=3.5e-44 Score=374.63 Aligned_cols=207 Identities=23% Similarity=0.356 Sum_probs=186.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +++|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR-PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 4579999999999999999999999999999999999987 789999999998743 2346789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.+.+..+ +.+..+..++++++++.++|.+..+++++.|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 84 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 160 (302)
T TIGR01188 84 RENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160 (302)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 99999876543 234444566789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
..+++.|++++++ |+|+|+++|+. +++.++||+|++|++|++++.|+++++.+
T Consensus 161 ~~l~~~l~~~~~~-g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 161 RAIWDYIRALKEE-GVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HHHHHHHHHHHhC-CCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999764 89999999975 58899999999999999999999988765
No 32
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7.3e-45 Score=339.22 Aligned_cols=202 Identities=25% Similarity=0.424 Sum_probs=184.7
Q ss_pred EeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-cccCeEEEEcCCCCCCCCCCHHHHHHH
Q psy10223 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-LFQTTCGYVNHRTDLIPSLTVEQTLYY 122 (606)
Q Consensus 44 ~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-~~~~~i~yv~q~~~~~~~lTV~e~l~f 122 (606)
=.+++.|++||++||+||||||||||||+|+|... |.+|+|++||++.... ..++-+++++|+.++|.+|||.+|+.+
T Consensus 16 ~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~-P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 16 MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET-PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC-CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 46889999999999999999999999999999988 7899999999998642 356789999999999999999999988
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy10223 123 AAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202 (606)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~ 202 (606)
+.. |.-.-..+.+++++.++..+||..+.++.+.+|||||||||++||+|+.+-+|++||||++.|||.-+.+...+
T Consensus 95 Gl~---P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~L 171 (231)
T COG3840 95 GLS---PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLAL 171 (231)
T ss_pred cCC---cccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHH
Confidence 764 21112345678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 203 LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 203 L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+.+++++.+.|+++++|||. ++..++|+++++++||+.+.|++++..
T Consensus 172 v~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 172 VSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 99999999999999999984 899999999999999999999998765
No 33
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.3e-44 Score=340.00 Aligned_cols=199 Identities=28% Similarity=0.407 Sum_probs=184.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~~~~~ 113 (606)
+++|+|||+.+++||++-|+||||||||||||+|.+..+ |++|+|+++|.+++. ..+|++||.|+||..+.++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~-pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~ 93 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER-PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPD 93 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc-CCCceEEECCeecccccccccchhhheeeeEeeecccccc
Confidence 669999999999999999999999999999999999988 889999999999863 1368999999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
.||.||+.|+++.. +.++.+.++++.++|+.+||.+.++..+.+|||||||||+||||++.+|++|+.||||.+|||
T Consensus 94 ~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp 170 (223)
T COG2884 94 RTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170 (223)
T ss_pred chHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCCh
Confidence 99999999998854 467788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
..+.++++++.++.+ .|+||++++|+ .+-+-++-.|++.|++|+++.+.
T Consensus 171 ~~s~~im~lfeeinr-~GtTVl~ATHd-~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 171 DLSWEIMRLFEEINR-LGTTVLMATHD-LELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHHHHHHHHHhh-cCcEEEEEecc-HHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999975 69999999996 45677778899999999998764
No 34
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=9e-44 Score=376.30 Aligned_cols=208 Identities=28% Similarity=0.408 Sum_probs=187.1
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lT 115 (606)
+++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.+||++|++.+++.+|
T Consensus 52 ~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~-p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS-PDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 34679999999999999999999999999999999999988 789999999998753 235678999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|.|++.+....+ ..+..+..++++++++.++|.+..++++++|||||||||+||+||+++|++++|||||+|||+.+
T Consensus 131 v~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~ 207 (340)
T PRK13536 131 VRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 207 (340)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 999999766543 23344455678889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.++.+.|+++++ .|+|||+++|+. +++.++||+|++|++|++++.|+++++.+
T Consensus 208 r~~l~~~l~~l~~-~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 208 RHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999976 589999999975 58999999999999999999999998865
No 35
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=6.5e-44 Score=379.22 Aligned_cols=210 Identities=25% Similarity=0.389 Sum_probs=188.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|+++.. ...++.++|++|++.++|++||.
T Consensus 14 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~ 92 (353)
T PRK10851 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH-QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVF 92 (353)
T ss_pred CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHH
Confidence 3579999999999999999999999999999999999987 789999999998753 22356799999999999999999
Q ss_pred HHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 118 QTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 118 e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
||+.|+...... ...++++..++++++++.++|.+..++++++|||||||||+|||||+.+|++++|||||+|||+.++
T Consensus 93 eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r 172 (353)
T PRK10851 93 DNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVR 172 (353)
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 999998653211 1234555667899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++.+.|+++.++.|.|+|+++|++ +++.+++|||++|++|+++..|+++++.
T Consensus 173 ~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 173 KELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999876789999999975 5899999999999999999999998874
No 36
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=8.1e-44 Score=380.61 Aligned_cols=207 Identities=22% Similarity=0.366 Sum_probs=188.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|+..+||++||.
T Consensus 26 ~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 104 (375)
T PRK09452 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET-PDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVF 104 (375)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHH
Confidence 4579999999999999999999999999999999999987 789999999998753 22357899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.|+.+.+ ..++.+.+++++++++.++|++..++++++|||||||||+|||||+.+|++++|||||+|||+.++.
T Consensus 105 eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~ 181 (375)
T PRK09452 105 ENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRK 181 (375)
T ss_pred HHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 9999987532 2455556678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++.+.|+++.++.|.|+|+++|++ +++..++|+|++|++|+++..|+++++.
T Consensus 182 ~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 182 QMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999887789999999975 5799999999999999999999998874
No 37
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-44 Score=358.85 Aligned_cols=207 Identities=27% Similarity=0.420 Sum_probs=190.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC----cccccCeEEEEcCCCC-CCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS----PQLFQTTCGYVNHRTD-LIPSL 114 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~----~~~~~~~i~yv~q~~~-~~~~l 114 (606)
+.+|+|+|+.+++||.++|+|+||||||||+++|+|+.+ |.+|+|.++|.+.. ...+|+++|||+|++. .+-.-
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~-p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~ 95 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK-PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP 95 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc-CCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence 589999999999999999999999999999999999998 78899999999865 3457899999999974 45566
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.|.+.|+... ...++++.+++++++++.+|+.+.+++.+..|||||||||+||.+|+.+|++++|||||+|||+.
T Consensus 96 tV~~evafg~~n---~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~ 172 (235)
T COG1122 96 TVEDEVAFGLEN---LGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPK 172 (235)
T ss_pred cHHHHHhhchhh---cCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHH
Confidence 999999999873 35677778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.+.++++.++++.++.|+|+|+++|+ .+.+.+++||+++|++|+++++|+++++.+
T Consensus 173 ~~~~l~~~l~~L~~~~~~tii~~tHd-~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 173 GRRELLELLKKLKEEGGKTIIIVTHD-LELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCc-HHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 99999999999998778999999996 578999999999999999999999877654
No 38
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.5e-44 Score=353.08 Aligned_cols=201 Identities=30% Similarity=0.474 Sum_probs=178.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||+
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER-PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 3579999999999999999999999999999999999987 789999999998753 22356799999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.+..... ........++++++++.+++.+..+++++.|||||||||+||++|+.+|++++|||||+|||+.++.
T Consensus 91 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~ 167 (213)
T cd03259 91 ENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLRE 167 (213)
T ss_pred HHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 9998875432 1234445567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
.+.+.|++++++.|+|||+++|++ +++.++||++++|++|++++.|
T Consensus 168 ~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 168 ELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999875689999999976 4788999999999999998765
No 39
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-43 Score=380.17 Aligned_cols=208 Identities=25% Similarity=0.420 Sum_probs=189.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|+..+||++||.
T Consensus 31 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 109 (377)
T PRK11607 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ-PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVE 109 (377)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHH
Confidence 3579999999999999999999999999999999999987 789999999998753 23467899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.|+.+.+ ..++.+.++++.++++.++|.+..++++++|||||||||+|||||+.+|++|+|||||++||..++.
T Consensus 110 eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~ 186 (377)
T PRK11607 110 QNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRD 186 (377)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 9999987632 2455566778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
++.+.|+++.++.|.|+|+++|++ +++..++||+++|++|+++..|+++++..
T Consensus 187 ~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 187 RMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 999999999877789999999975 58999999999999999999999988753
No 40
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.2e-43 Score=377.22 Aligned_cols=209 Identities=22% Similarity=0.356 Sum_probs=189.5
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccc----cCeEEEEcCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLF----QTTCGYVNHRTDL 110 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~----~~~i~yv~q~~~~ 110 (606)
+.+.+|+|+||+|++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++.. ..+ ++.++|++|++.+
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 34679999999999999999999999999999999999998 789999999998753 223 6789999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
+|++||+||+.+..... +.++++..+++.++++.+||++..+++++.|||||||||+|||||+.+|++++|||||++
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 99999999999987642 345556677899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||+.++.++.+.|+++.++.++|+|+++|+. +++.++||||++|++|+++..|+++++..
T Consensus 160 LD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 160 LDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 9999999999999999876689999999975 57899999999999999999999988753
No 41
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-43 Score=353.16 Aligned_cols=206 Identities=26% Similarity=0.379 Sum_probs=182.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
.+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK-PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTG 90 (220)
T ss_pred CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEecCcChHHHhhcEEEecCCccccccCcH
Confidence 4579999999999999999999999999999999999987 789999999987642 2345679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+|++.+....+ .....+..++++++++.+++.+..+++++.|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 91 ~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~ 167 (220)
T cd03265 91 WENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTR 167 (220)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHH
Confidence 99999876532 233344556789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
..+.+.|++++++.|+|+|+++|++ +++.+++|++++|++|+++..|+++++
T Consensus 168 ~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 168 AHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999875588999999975 478899999999999999999887653
No 42
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-44 Score=350.13 Aligned_cols=204 Identities=30% Similarity=0.467 Sum_probs=184.6
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCCC--CCCCC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTD--LIPSL 114 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~--~~~~l 114 (606)
++|+|||+++.+||.++|+|+||||||||.++|+|+.+ +.+|+|.++|.+..+. .+++.+-+|+||+. +.|..
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~ 99 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK-PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR 99 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC-CCCceEEECCcccCccccchhhccceeEEecCCccccCcch
Confidence 59999999999999999999999999999999999998 7899999999876542 36788999999974 89999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||++.|.-+.+. .+.++ .++++.++|+.+||. ..+++++.+||||||||++|||||+.+|++|++|||||+||+
T Consensus 100 tv~~~l~Epl~~---~~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~ 174 (252)
T COG1124 100 TVGRILSEPLRP---HGLSK--SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174 (252)
T ss_pred hHHHHHhhhhcc---CCccH--HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcH
Confidence 999999888763 23333 334599999999996 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
..+.+++++|.++.++.+.|.|+++|+ ..-+..+|||++||++|++++.++++++.+
T Consensus 175 siQa~IlnlL~~l~~~~~lt~l~IsHd-l~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 175 SVQAQILNLLLELKKERGLTYLFISHD-LALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEeCc-HHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999999999986 567999999999999999999999998864
No 43
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-43 Score=377.36 Aligned_cols=207 Identities=27% Similarity=0.429 Sum_probs=186.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++.. ...++.++|++|+..++|++||+
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~-p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~ 93 (369)
T PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED-ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVA 93 (369)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHH
Confidence 4579999999999999999999999999999999999987 789999999998753 12356799999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.|....+ ..++.+.+++++++++.++|.+..++++++|||||||||+|||||+.+|++++|||||+|||+.++.
T Consensus 94 eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~ 170 (369)
T PRK11000 94 ENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV 170 (369)
T ss_pred HHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 9999987532 2344555678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++.+.|+++.++.|.|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 171 ~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 171 QMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999876689999999975 5789999999999999999999998874
No 44
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-43 Score=355.32 Aligned_cols=209 Identities=23% Similarity=0.360 Sum_probs=182.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-cccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-LFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|++.+++.+||.
T Consensus 14 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 92 (239)
T cd03296 14 DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER-PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVF 92 (239)
T ss_pred CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCCccccceEEEecCCcccCCCCHH
Confidence 3579999999999999999999999999999999999987 7899999999987431 2356799999999999999999
Q ss_pred HHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 118 QTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 118 e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
||+.+....... ......+..++++++++.+++.+..++++++|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~ 172 (239)
T cd03296 93 DNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 172 (239)
T ss_pred HHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 999887543211 0012333456788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|++++.|+++++
T Consensus 173 ~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 173 KELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999999999875689999999986 468899999999999999999998765
No 45
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3.6e-43 Score=348.47 Aligned_cols=201 Identities=24% Similarity=0.415 Sum_probs=178.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-cccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-LFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|++.+++.+||+
T Consensus 12 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE-PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 3579999999999999999999999999999999999987 7899999999987531 2346799999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.+..... .....+.+++++++++.+|+.+..+++++.||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 91 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~ 167 (213)
T cd03301 91 DNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRV 167 (213)
T ss_pred HHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 9998875432 2334445667889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
.+.+.|++++++.|+|+|+++|++ +++.++||++++|++|+++++|
T Consensus 168 ~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 168 QMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 999999999876689999999976 4788999999999999999876
No 46
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-43 Score=349.17 Aligned_cols=201 Identities=29% Similarity=0.435 Sum_probs=179.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. .++.++|++|++.+++.+||+||
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~ 93 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDN 93 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHHH
Confidence 579999999999999999999999999999999999987 789999999998752 46789999999999999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+.+....+ ........++++++++.+++.+..++++++||||||||++||+||+.+|++++|||||+|||+.++..+
T Consensus 94 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~ 170 (220)
T cd03293 94 VALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL 170 (220)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHH
Confidence 99876432 233344456788999999999989999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc--CCeEEEecChh
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC--LGDLIYAGPTR 247 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~--~G~~v~~G~~~ 247 (606)
.+.|+++.++.++|+|+++|++ +++.++||++++|+ +|+++..++.+
T Consensus 171 ~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 171 QEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999998766689999999986 46889999999999 79999887653
No 47
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-43 Score=372.75 Aligned_cols=207 Identities=27% Similarity=0.420 Sum_probs=186.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---c---cccCeEEEEcCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---Q---LFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~---~~~~~i~yv~q~~~~~~ 112 (606)
.+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. . ..++.++|++|++.+++
T Consensus 17 ~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~ 95 (343)
T PRK11153 17 TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER-PTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLS 95 (343)
T ss_pred ceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCC
Confidence 3579999999999999999999999999999999999987 789999999998753 1 24678999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+||.||+.+..... ..++.+.++++.++++.+||.+..++++++|||||||||+||+||+.+|++++|||||+|||
T Consensus 96 ~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD 172 (343)
T PRK11153 96 SRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALD 172 (343)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 999999999876532 23444556778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+.++..+.+.|++++++.|+|+|+++|+. +++.++||++++|++|++++.|+++++.
T Consensus 173 ~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 173 PATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999876689999999975 5788999999999999999999988764
No 48
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-43 Score=355.34 Aligned_cols=209 Identities=25% Similarity=0.423 Sum_probs=181.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~~~~~ 113 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIER 92 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCCceEEECCEeccccCHhHHHHHHhccEEEcccCccccc
Confidence 579999999999999999999999999999999999987 789999999988742 1246689999999999999
Q ss_pred CCHHHHHHHHHHccC-----CCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 114 LTVEQTLYYAAHLSI-----GPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 114 lTV~e~l~f~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
+||.||+.+...... ..........+++.++++.+++.+..++.+++|||||||||+||+||+.+|++++|||||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 172 (241)
T cd03256 93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV 172 (241)
T ss_pred CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 999999987643110 001112234567888999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+|||+.++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|++++.|++++..
T Consensus 173 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 173 ASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 999999999999999999876689999999986 4788899999999999999999988753
No 49
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=4e-43 Score=353.57 Aligned_cols=209 Identities=29% Similarity=0.451 Sum_probs=182.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---c-ccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---L-FQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~-~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... . .+..++|++|++.+++.+
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 4579999999999999999999999999999999999987 7899999999987531 1 245699999999999999
Q ss_pred CHHHHHHHHHHccCCCC-------CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 115 TVEQTLYYAAHLSIGPQ-------VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
||+|++.+......... ....+..+++.++++.+|+.+..++++++|||||||||+||+||+.+|++++||||
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 170 (236)
T cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEP 170 (236)
T ss_pred CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999988764321110 01334456788999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+|||+.++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 171 t~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 171 AAGLNPEETEELAELIRELRE-RGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred cccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 999999999999999999976 589999999976 4788999999999999999999987753
No 50
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=4.8e-43 Score=366.25 Aligned_cols=207 Identities=28% Similarity=0.424 Sum_probs=184.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 94 (303)
T TIGR01288 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS-PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTV 94 (303)
T ss_pred CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcH
Confidence 4579999999999999999999999999999999999987 789999999998742 2346789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
.|++.+..... ..+..+..++++++++.+++.+..++++++|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 95 ~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 171 (303)
T TIGR01288 95 RENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 171 (303)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 99998755432 233444456778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|++++.|+++++..
T Consensus 172 ~~l~~~l~~~~~-~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 172 HLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999976 589999999976 57889999999999999999999988754
No 51
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=6.1e-43 Score=365.05 Aligned_cols=206 Identities=22% Similarity=0.388 Sum_probs=185.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~-~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv 92 (301)
T TIGR03522 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP-PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYV 92 (301)
T ss_pred CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcH
Confidence 4679999999999999999999999999999999999987 789999999998753 2356789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
.||+.+.+.++ +.+.++..++++++++.+||.+..+++++.|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 93 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~ 169 (301)
T TIGR03522 93 REYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQL 169 (301)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 99999877643 234444556789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
..+.+.|+++++ ++|||+++|+. +++.++|||+++|++|++++.|+.+++..
T Consensus 170 ~~l~~~l~~~~~--~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 170 VEIRNVIKNIGK--DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHHHHHHHhcC--CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999853 68999999975 57999999999999999999999998765
No 52
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-43 Score=352.17 Aligned_cols=205 Identities=26% Similarity=0.404 Sum_probs=183.0
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc------cccCeEEEEcCCCCCCCCC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ------LFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~------~~~~~i~yv~q~~~~~~~l 114 (606)
++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER-PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence 79999999999999999999999999999999999987 7899999999987431 2356799999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
|+.||+.+....+ ........+++.++++.+++.+..++.++.|||||||||+||++|+.+|++++|||||+|||+.
T Consensus 98 t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~ 174 (233)
T cd03258 98 TVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174 (233)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHH
Confidence 9999998876532 2333444567889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++..+.+.|++++++.|+|+|+++|++ +++.+++|++++|++|+++..|+.+++.
T Consensus 175 ~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 175 TTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999876689999999975 5788999999999999999999887653
No 53
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-43 Score=341.77 Aligned_cols=210 Identities=28% Similarity=0.407 Sum_probs=184.8
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLI 111 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~ 111 (606)
.|+..++|++||+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|++++. +..|..++||||....|
T Consensus 12 ~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF 90 (237)
T COG0410 12 GYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-PRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIF 90 (237)
T ss_pred cccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeeEEECCeecCCCCHHHHHhCCeEeCcccccch
Confidence 4555789999999999999999999999999999999999987 678999999999864 24577899999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL-ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
|.|||+|||..++..+.. +...+..++++.+.| .|.+..+++.+.|||||||-++|||||+.+|++|+|||||.|
T Consensus 91 ~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~G 166 (237)
T COG0410 91 PRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEG 166 (237)
T ss_pred hhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccC
Confidence 999999999988764321 111222267777777 577888999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|-|.-..++.+.+++++++.|.||+++ +|....+.+++||.++|.+|+++++|+++++.+
T Consensus 167 LaP~iv~~I~~~i~~l~~~~g~tIlLV-EQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 167 LAPKIVEEIFEAIKELRKEGGMTILLV-EQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred cCHHHHHHHHHHHHHHHHcCCcEEEEE-eccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 999999999999999998778888887 666778999999999999999999999998754
No 54
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-44 Score=340.87 Aligned_cols=213 Identities=23% Similarity=0.425 Sum_probs=191.1
Q ss_pred ccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCCCC
Q psy10223 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDL 110 (606)
Q Consensus 35 ~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~ 110 (606)
++++++++++|||++|++||+++++|||||||||.+.++.|+.+ +++|+|.++|.+++.. ..|..+||+||++..
T Consensus 12 K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~-~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SI 90 (243)
T COG1137 12 KSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR-PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASI 90 (243)
T ss_pred HhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe-cCCceEEECCcccccCChHHHhhcCcccccccchH
Confidence 35567899999999999999999999999999999999999998 8999999999998752 345679999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
|..|||+||+...+..+.. ...+.+.+++++++|++|+++++.+++...||||||||+.|||||+.+|+.++||||++|
T Consensus 91 Fr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAG 169 (243)
T COG1137 91 FRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAG 169 (243)
T ss_pred hhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccC
Confidence 9999999999988876531 223345566788999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.||.+..++.++++.+++ .|..|++|-|.- -+..++|||.+++++|+++.+|+++++.+
T Consensus 170 VDPiaV~dIq~iI~~L~~-rgiGvLITDHNV-REtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 170 VDPIAVIDIQRIIKHLKD-RGIGVLITDHNV-RETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred CCchhHHHHHHHHHHHHh-CCceEEEccccH-HHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999986 589999987754 57899999999999999999999998864
No 55
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=7.3e-43 Score=350.73 Aligned_cols=207 Identities=25% Similarity=0.459 Sum_probs=182.4
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---c-ccCeEEEEcCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---L-FQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~-~~~~i~yv~q~~~~~~~ 113 (606)
+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... . .++.++|++|++.+++.
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 34579999999999999999999999999999999999987 7899999999886421 1 24579999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+||+||+.+....+ .....+..++++++++.+++.+..++.++.|||||||||+||+||+.+|++++|||||+|||+
T Consensus 90 ~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 166 (232)
T cd03218 90 LTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDP 166 (232)
T ss_pred CcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCH
Confidence 99999998865432 123344456788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++..+.+.|+++++ .++|+|+++|++ +++.+++|++++|++|+++..|+.++..
T Consensus 167 ~~~~~~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 167 IAVQDIQKIIKILKD-RGIGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 999999999999976 588999999976 4789999999999999999999887653
No 56
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-42 Score=360.06 Aligned_cols=217 Identities=24% Similarity=0.414 Sum_probs=187.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----ccccCeEEEEcCCCC-CCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD-LIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~-~~~~ 113 (606)
+++|+|||+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .+..
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 98 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK-PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFE 98 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccc
Confidence 469999999999999999999999999999999999987 789999999998753 135678999999863 3345
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc--hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS--NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
.||+|++.+..... +.++++..++++++++.+||. +..+++++.||||||||++||+||+.+|++++|||||+||
T Consensus 99 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gL 175 (287)
T PRK13637 99 ETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGL 175 (287)
T ss_pred ccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCC
Confidence 79999999876432 345556667889999999997 6789999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH---HHHHcCCCCC
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE---YFRSIGFPCP 261 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~---~f~~~G~~~~ 261 (606)
|+.++.++.+.|++++++.|+|||+++|+. +++.++||||++|++|++++.|+++++.+ .....|+..|
T Consensus 176 D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 247 (287)
T PRK13637 176 DPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAVP 247 (287)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhCHHHHHHcCCCCC
Confidence 999999999999999876689999999975 57888999999999999999999988753 2334455544
No 57
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-42 Score=352.08 Aligned_cols=206 Identities=27% Similarity=0.459 Sum_probs=183.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE-PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcH
Confidence 569999999999999999999999999999999999987 789999999988643 2346689999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch--hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN--VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
+||+.+..... .....+..+++.++++.+++.+ ..++++++|||||||||+||+||+.+|++++|||||+|||+.
T Consensus 93 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 169 (242)
T cd03295 93 EENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPI 169 (242)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHH
Confidence 99998875432 2234445567889999999986 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++..+.+.|++++++.|+|+|+++|++ +++.+++|++++|++|++++.|+++++.
T Consensus 170 ~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 170 TRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999875589999999986 4688999999999999999999887653
No 58
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-43 Score=346.75 Aligned_cols=216 Identities=28% Similarity=0.453 Sum_probs=192.0
Q ss_pred eeeeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcC
Q psy10223 31 QRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNH 106 (606)
Q Consensus 31 ~~~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q 106 (606)
.|.||. ..+++|||+++++||+++|+||||||||||+|+|+|.++ |++|+|.++|++++. +..|..++-.+|
T Consensus 11 ~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~-P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ 86 (250)
T COG0411 11 SKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK-PSSGTVIFRGRDITGLPPHRIARLGIARTFQ 86 (250)
T ss_pred eeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc-CCCceEEECCcccCCCCHHHHHhccceeecc
Confidence 445544 689999999999999999999999999999999999998 899999999999864 224667899999
Q ss_pred CCCCCCCCCHHHHHHHHHHccC--------CCC-CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhh
Q psy10223 107 RTDLIPSLTVEQTLYYAAHLSI--------GPQ-VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVK 177 (606)
Q Consensus 107 ~~~~~~~lTV~e~l~f~~~~~~--------~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~ 177 (606)
...+|++|||.||+..++..+. +.. ...++..+++.++|+.+||.+.+|++.++||+|||||+.|||||++
T Consensus 87 ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~ 166 (250)
T COG0411 87 ITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALAT 166 (250)
T ss_pred cccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhc
Confidence 9999999999999999865331 111 1345567789999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+|++|+||||.+||.+..+.++.+.|+++.++.|.|++++-|+ ..-++++||||+||+.|+++.+|+++++.+
T Consensus 167 ~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHd-M~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHD-MKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEec-cHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 9999999999999999999999999999998778999998774 678999999999999999999999999864
No 59
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=6.6e-43 Score=348.29 Aligned_cols=203 Identities=27% Similarity=0.440 Sum_probs=180.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+||+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 93 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVR 93 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHH
Confidence 579999999999999999999999999999999999987 789999999998743 23566799999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.+..... ..+..+..+++.++++.++|.+..++.+++|||||||||+||++|+.+|++++|||||+|||+.++.
T Consensus 94 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~ 170 (220)
T cd03263 94 EHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRR 170 (220)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHH
Confidence 9998876532 2233344567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|+++++
T Consensus 171 ~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 171 AIWDLILEVRK--GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHHHHhc--CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999864 48999999986 468889999999999999999988764
No 60
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-43 Score=339.58 Aligned_cols=206 Identities=26% Similarity=0.437 Sum_probs=181.6
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRT 108 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~ 108 (606)
+++++|+|||+.|++++++|+|||||||||||||++...... ..+|+|.++|+++.. ..+|+++|+|+|.+
T Consensus 18 g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 357899999999999999999999999999999999876431 246999999999743 24799999999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN----VARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
..|| +|++||+.++.++... ..++..+.+++.|+...|.+ .+++...+||||||||++|||||+.+|+||+|
T Consensus 98 nPFp-~SIydNVayG~r~~g~---~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLm 173 (253)
T COG1117 98 NPFP-MSIYDNVAYGLRLHGI---KDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLM 173 (253)
T ss_pred CCCC-chHHHHHHHhHHhhcc---chHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEe
Confidence 9999 8999999999987532 23667788999999888853 45667889999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||||+|||.++.++-+++.++++ .-|||+++|. .+.+.+..|+..++..|++|++|+++++.
T Consensus 174 DEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHn-mqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 174 DEPTSALDPISTLKIEELITELKK--KYTIVIVTHN-MQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred cCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCC-HHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999974 5799998886 56899999999999999999999999873
No 61
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-43 Score=345.29 Aligned_cols=199 Identities=29% Similarity=0.498 Sum_probs=177.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++.. ..++.++|++|++.+++.+||+|
T Consensus 12 ~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e 89 (210)
T cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL-PDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVID 89 (210)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHH
Confidence 4579999999999999999999999999999999999987 789999999988753 35678999999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+....+ .....+..+++.++++.+++.+..++++++|||||||||+||++|+.+|++++|||||+|||+.++..
T Consensus 90 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~ 166 (210)
T cd03269 90 QLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVEL 166 (210)
T ss_pred HHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 998876532 22334455678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
+.+.|+++++ .++|+|+++|++ +++.+++|++++|++|++++.|
T Consensus 167 ~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 167 LKDVIRELAR-AGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHHHHH-CCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 9999999876 478999999976 4688899999999999998764
No 62
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=5.3e-43 Score=354.16 Aligned_cols=209 Identities=25% Similarity=0.417 Sum_probs=180.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~~~~ 112 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE-PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence 3579999999999999999999999999999999999987 789999999988642 124678999999999999
Q ss_pred CCCHHHHHHHHHHccC-----CCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 113 SLTVEQTLYYAAHLSI-----GPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
.+||+||+.++..... .......+..+++.++++.+++.+..++.++.|||||||||+||+||+.+|++++||||
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 172 (243)
T TIGR02315 93 RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEP 172 (243)
T ss_pred cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999987532100 00111223456788999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|+|||+.++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|+++..|+++++
T Consensus 173 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 173 IASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 9999999999999999999765688999999976 467899999999999999999988764
No 63
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.9e-43 Score=357.90 Aligned_cols=211 Identities=26% Similarity=0.401 Sum_probs=185.5
Q ss_pred ccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---cc----ccCeEEEEcCC
Q psy10223 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QL----FQTTCGYVNHR 107 (606)
Q Consensus 35 ~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~----~~~~i~yv~q~ 107 (606)
.+++.+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. .. .++.++|++|+
T Consensus 32 ~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~ 110 (269)
T cd03294 32 KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQS 110 (269)
T ss_pred hhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccChhhhhhhhcCcEEEEecC
Confidence 34556789999999999999999999999999999999999987 789999999988642 11 23579999999
Q ss_pred CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 108 TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 108 ~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
+.+++.+||.||+.+..... .....+..+++.++++.++|.+..++.+++|||||||||+||+||+.+|+++|||||
T Consensus 111 ~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEP 187 (269)
T cd03294 111 FALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA 187 (269)
T ss_pred cccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999999999999876432 123344456788999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+|||+.++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 188 t~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 188 FSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999765689999999975 4788999999999999999999987764
No 64
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.5e-42 Score=347.44 Aligned_cols=205 Identities=43% Similarity=0.719 Sum_probs=178.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC--CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV 116 (606)
.+++|+|+|+++++||+++|+||||||||||+|+|+|+.++ +.+|+|.++|.++.....++.++|++|++.+++.+||
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv 98 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTV 98 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcH
Confidence 36799999999999999999999999999999999999762 5789999999987654567889999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHH-HHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQ-VLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
+||+.++................++++ .++.+++++..++.++.|||||||||+||++|+.+|++++|||||+|||+.+
T Consensus 99 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~ 178 (226)
T cd03234 99 RETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT 178 (226)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHH
Confidence 999998765332211122223334555 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
+..+.+.|+++++ .+.|+|+++|++.+++.++||++++|++|++++.|
T Consensus 179 ~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 179 ALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999876 48899999998756799999999999999998865
No 65
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=8.3e-43 Score=346.74 Aligned_cols=195 Identities=27% Similarity=0.430 Sum_probs=173.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---c---cccCeEEEEcCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---Q---LFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~---~~~~~i~yv~q~~~~~~~ 113 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. . .+++.++|++|++.+++.
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK-PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSD 94 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccc
Confidence 469999999999999999999999999999999999987 789999999998642 1 245689999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+||.||+.+....+ .....+..+++.++++.+|+.+..++.+++|||||||||+||+||+.+|++++|||||+|||+
T Consensus 95 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~ 171 (216)
T TIGR00960 95 RTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDP 171 (216)
T ss_pred ccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCH
Confidence 99999999876532 223344556789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
.++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|++
T Consensus 172 ~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 172 ELSRDIMRLFEEFNR-RGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999975 488999999976 478889999999999974
No 66
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=9.4e-43 Score=346.68 Aligned_cols=195 Identities=29% Similarity=0.467 Sum_probs=172.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-------cccCeEEEEcCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-------LFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-------~~~~~i~yv~q~~~~~~ 112 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|++.+++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR-PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP 95 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC-CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence 579999999999999999999999999999999999987 7899999999887431 12467999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+||+||+.+....+ .....+.+++++++++.+|+.+..++.++.|||||||||+||+||+.+|++++|||||+|||
T Consensus 96 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD 172 (218)
T cd03255 96 DLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLD 172 (218)
T ss_pred CCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCC
Confidence 999999999876532 22333445678899999999998999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
+.++..+.+.|++++++.|+|+|+++|++. ++. .||++++|++|++
T Consensus 173 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 173 SETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 999999999999997656899999999864 454 9999999999974
No 67
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.9e-42 Score=363.69 Aligned_cols=208 Identities=21% Similarity=0.329 Sum_probs=185.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCC--CCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRT--DLI 111 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~--~~~ 111 (606)
..+|+|||++|++||+++|+|+||||||||+|+|+|+.+ +.+|+|.++|.++.. ..+++.++||+|++ .++
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK-ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLN 112 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcC
Confidence 579999999999999999999999999999999999987 789999999998753 12467899999997 589
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
|.+||.|++.+...... ...++.+.+++++++++.+++. +..++++++|||||||||+||+||+.+|+++++||||+|
T Consensus 113 p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~ 191 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSA 191 (331)
T ss_pred CCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 99999999998765321 1245556677889999999994 578999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||+.++.++++.|+++.++.|.|+|+++|+. +.+.++||||++|++|++++.|+++++.
T Consensus 192 LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 192 LDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999876689999999975 5788899999999999999999988775
No 68
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2e-42 Score=349.48 Aligned_cols=207 Identities=26% Similarity=0.444 Sum_probs=182.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----ccccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~~~~~ 113 (606)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (240)
T PRK09493 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE-ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPH 91 (240)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCChhHHHHhhceEEEecccccCCC
Confidence 4579999999999999999999999999999999999987 789999999998753 2346689999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+||.||+.+..... ......+..+++.++++.+|+++..+++++.|||||||||+||+||+.+|++++|||||+|||+
T Consensus 92 ~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~ 169 (240)
T PRK09493 92 LTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP 169 (240)
T ss_pred CcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 99999998864211 1233444556788999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|++++.|+.++..
T Consensus 170 ~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 170 ELRHEVLKVMQDLAE-EGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 999999999999875 489999999986 4688899999999999999999987764
No 69
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-42 Score=357.18 Aligned_cols=214 Identities=21% Similarity=0.361 Sum_probs=186.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC-CCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD-LIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~~lT 115 (606)
+.+|+|+|++|++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .++..|
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 98 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE-AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGAT 98 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhccccc
Confidence 459999999999999999999999999999999999987 789999999998753 235678999999974 677889
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|+||+.+..... +.++++..+++.++++.+||.+..++.++.|||||||||+||+||+.+|++|+|||||+|||+.+
T Consensus 99 v~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~ 175 (279)
T PRK13650 99 VEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEG 175 (279)
T ss_pred HHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 999999875422 34555566788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH---HHHHcCCC
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE---YFRSIGFP 259 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~---~f~~~G~~ 259 (606)
+..+.+.|++++++.|+|+|+++|+.. ++ ..||++++|++|+++..|++++..+ .++..|++
T Consensus 176 ~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 240 (279)
T PRK13650 176 RLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELFSRGNDLLQLGLD 240 (279)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHHcChHHHHHcCCC
Confidence 999999999998766899999999864 55 5899999999999999999987653 23444554
No 70
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-42 Score=358.90 Aligned_cols=216 Identities=25% Similarity=0.397 Sum_probs=185.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCC--CC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRT--DL 110 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~--~~ 110 (606)
+++|+|||+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|+++.. ...++.++|++|++ .+
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQL 98 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhh
Confidence 469999999999999999999999999999999999987 789999999998741 23567899999986 34
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+ ..||.||+.|+.... ..+..+..++++++++.+||. +..+++++.|||||||||+||++|+.+|++++|||||+
T Consensus 99 ~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~ 174 (290)
T PRK13634 99 F-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTA 174 (290)
T ss_pred h-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 5 479999999876422 234555567789999999997 67899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH---HHHHcCCCCC
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE---YFRSIGFPCP 261 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~---~f~~~G~~~~ 261 (606)
|||+.++.++.+.|++++++.|.|||+++|+. +++.++||||++|++|++++.|+++++.+ .+...|..+|
T Consensus 175 ~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 248 (290)
T PRK13634 175 GLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQGTPREIFADPDELEAIGLDLP 248 (290)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCC
Confidence 99999999999999999876689999999975 57889999999999999999999887642 3344455443
No 71
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.2e-42 Score=348.24 Aligned_cols=203 Identities=28% Similarity=0.460 Sum_probs=176.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC-----CCCCeeEEEECCEeCCc-----ccccCeEEEEcCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS-----SGTTRGEIILDGTPMSP-----QLFQTTCGYVNHRT 108 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~-----~~~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~ 108 (606)
++++|+|+|+++++||+++|+||||||||||+|+|+|+. + +.+|+|.++|.++.. ...++.++|++|++
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA-PDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC-CCCeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 457999999999999999999999999999999999998 5 788999999998642 23467899999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhccc--CCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN--ISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~--v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
.++ .+||+||+.++...+. .....+.++++.++++.+|+.+..++. +++|||||||||+||+||+.+|++++|||
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 167 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDE 167 (227)
T ss_pred hhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 888 7999999988765321 112223456788999999999887777 59999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRL 248 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~ 248 (606)
||+|||+.++..+.+.|++++++ +|+|+++|++ +++.++||++++|++|++++.|++++
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 168 PTSALDPISTAKIEELIAELKKE--YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred CCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999999999999999999763 8999999976 47888999999999999999998764
No 72
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.8e-42 Score=344.73 Aligned_cols=198 Identities=27% Similarity=0.441 Sum_probs=177.5
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++|+|+|+++++||+++|+|+||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+||.|
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE-PDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARE 97 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHH
Confidence 69999999999999999999999999999999999987 789999999998753 235678999999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+....+ .....+..+++.++++.+|+.+..++.++.||||||||++||+||+.+|++++|||||+|||+.++..
T Consensus 98 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~ 174 (218)
T cd03266 98 NLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRA 174 (218)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHH
Confidence 998865432 23344556778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
+.+.|+++++ .|+|+|+++|++ +++.+++|++++|++|++++.|
T Consensus 175 l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 175 LREFIRQLRA-LGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHHHH-CCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 9999999975 488999999976 4788999999999999998754
No 73
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.1e-42 Score=344.96 Aligned_cols=204 Identities=29% Similarity=0.422 Sum_probs=178.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---c-ccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---L-FQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~-~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... . .++.++|++|++.+++.+
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 4579999999999999999999999999999999999987 7899999999887431 1 356799999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL-ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
|++||+.+...... ..+..+++.++++.+ ++.+..+++++.|||||||||+||+||+.+|++++|||||+|||+
T Consensus 91 t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 165 (222)
T cd03224 91 TVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAP 165 (222)
T ss_pred cHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence 99999988764321 122345677888888 588888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++..+.+.|+++++ .++|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 166 ~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 166 KIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999976 588999999975 5788999999999999999999887653
No 74
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.9e-42 Score=354.44 Aligned_cols=208 Identities=22% Similarity=0.372 Sum_probs=182.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc------cccCeEEEEcCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ------LFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~------~~~~~i~yv~q~~~~~~ 112 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|+..+++
T Consensus 19 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 97 (269)
T PRK11831 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA-PDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFT 97 (269)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEccccChhhHHHHhhcEEEEecccccCC
Confidence 4579999999999999999999999999999999999987 7899999999887421 23567999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+||.||+.+..... ......+..+++.++++.+|+.+..+++++.|||||||||+||++|+.+|++++|||||+|||
T Consensus 98 ~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 175 (269)
T PRK11831 98 DMNVFDNVAYPLREH--TQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQD 175 (269)
T ss_pred CCCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 999999998865321 112334445678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+.++..+.+.|++++++.|+|+|+++|+. +++.++||++++|++|++++.|+++++.
T Consensus 176 ~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 176 PITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999766689999999975 5788999999999999999999987653
No 75
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-42 Score=354.16 Aligned_cols=215 Identities=21% Similarity=0.338 Sum_probs=184.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC-CCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD-LIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~~lT 115 (606)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .++..|
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 96 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL-PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSST 96 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCc
Confidence 469999999999999999999999999999999999987 789999999998753 234667999999963 455689
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|.||+.|..... ...+.+.++++.++++.+||.+..++++.+|||||||||+||+||+.+|++++|||||+|||+.+
T Consensus 97 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~ 173 (274)
T PRK13647 97 VWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRG 173 (274)
T ss_pred HHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHH
Confidence 999999875421 23444555678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH--HHHHHcCCCC
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML--EYFRSIGFPC 260 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~--~~f~~~G~~~ 260 (606)
+.++.+.|++++++ |+|+|+++|+. +++.++|||+++|++|++++.|+++++. +.++..|..+
T Consensus 174 ~~~l~~~l~~~~~~-g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 238 (274)
T PRK13647 174 QETLMEILDRLHNQ-GKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGLRL 238 (274)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHhcCHHHHHHcCCCC
Confidence 99999999999864 89999999975 5688999999999999999999986542 2333445443
No 76
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-42 Score=355.09 Aligned_cols=207 Identities=25% Similarity=0.405 Sum_probs=182.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----ccccCeEEEEcCCCC-CCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD-LIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~-~~~~ 113 (606)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++. .+..
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 97 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK-PSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS 97 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcc
Confidence 469999999999999999999999999999999999987 789999999998731 235678999999974 3345
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
.||+||+.+..... +.+..+..++++++++.+||.+..+++++.||||||||++||+||+.+|++++|||||+|||+
T Consensus 98 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~ 174 (283)
T PRK13636 98 ASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDP 174 (283)
T ss_pred ccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 79999998865421 234555567789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.++..+.+.|++++++.|+|||+++|+. +++.++|||+++|++|++++.|++++...
T Consensus 175 ~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 175 MGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999876689999999975 46788999999999999999999988754
No 77
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=5.5e-42 Score=345.58 Aligned_cols=207 Identities=33% Similarity=0.470 Sum_probs=181.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV-AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence 4579999999999999999999999999999999999987 789999999987643 1233579999999988899999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.+....+ .....+..+++.++++.+|+.+..++.++.||||||||++||+||+.+|++++|||||+|||+.++
T Consensus 92 ~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 168 (236)
T TIGR03864 92 RQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASR 168 (236)
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHH
Confidence 99998765432 233344456788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
..+.+.|++++++.|+|+|+++|++. ++. .+|++++|++|+++..|+++++.+
T Consensus 169 ~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 169 AAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 99999999998656899999999864 554 599999999999999999877653
No 78
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2e-42 Score=372.24 Aligned_cols=210 Identities=21% Similarity=0.340 Sum_probs=184.7
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~l 114 (606)
+++.+|+|+||++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. +..++.++|++|++.+++.+
T Consensus 14 ~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~-p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 14 GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 34679999999999999999999999999999999999988 789999999998753 34577899999999999999
Q ss_pred CHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGP-QVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||+|++.++....... .....+.+++++++++.+|+.+..++++++|||||||||+|||||+++|++|+|||||+|||+
T Consensus 93 tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~ 172 (402)
T PRK09536 93 DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDI 172 (402)
T ss_pred CHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 9999998864311000 011234456789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++.+++++|+++++ .|+|+|+++|+. +++.++|||+++|++|+++..|+++++.
T Consensus 173 ~~~~~l~~lL~~l~~-~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 173 NHQVRTLELVRRLVD-DGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHHHHHHHHHh-cCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999986 588999999975 6889999999999999999999998753
No 79
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3e-42 Score=350.26 Aligned_cols=207 Identities=26% Similarity=0.442 Sum_probs=181.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----------ccccCeEEEEcCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----------QLFQTTCGYVNHR 107 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----------~~~~~~i~yv~q~ 107 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|+
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ-PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 3579999999999999999999999999999999999987 788999999988642 1245689999999
Q ss_pred CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 108 TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 108 ~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
+.+++.+||.||+.++.... ......+..+++.++++.+|+.+..++.+++|||||||||+||++|+.+|++++||||
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEP 171 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIV--KGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEP 171 (250)
T ss_pred cccCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999999999998754311 1223344456788999999999888999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+|||+.++..+.+.|+++++ .|.|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 172 t~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 172 TSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEM-SFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred CccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999976 488999999975 4788999999999999999999987753
No 80
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-42 Score=355.99 Aligned_cols=218 Identities=24% Similarity=0.363 Sum_probs=188.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCC--CC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRT--DL 110 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~--~~ 110 (606)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++ .+
T Consensus 19 ~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 97 (288)
T PRK13643 19 SRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQL 97 (288)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-CCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhc
Confidence 359999999999999999999999999999999999987 789999999998741 13567899999986 45
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
++ .||.|++.|+.... +.++.+.++++.++++.++|. +..++.++.|||||||||+||++|+.+|++++|||||+
T Consensus 98 ~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~ 173 (288)
T PRK13643 98 FE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTA 173 (288)
T ss_pred cc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 55 69999999876532 244556667889999999996 57899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH---HHHHcCCCCCCCC
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE---YFRSIGFPCPELE 264 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~---~f~~~G~~~~~~~ 264 (606)
|||+.++..+.+.|+++++ .|+|||+++|++ +++.++||||++|++|++++.|+++++.+ .++..|+.+|...
T Consensus 174 gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~ 249 (288)
T PRK13643 174 GLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKAT 249 (288)
T ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHH
Confidence 9999999999999999976 489999999975 57889999999999999999999988743 4456677766543
No 81
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-42 Score=344.58 Aligned_cols=201 Identities=28% Similarity=0.425 Sum_probs=176.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc------cc-cCeEEEEcCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ------LF-QTTCGYVNHRTDLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~------~~-~~~i~yv~q~~~~~~ 112 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|+++... .. ++.++|++|++.+++
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT-PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLP 100 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCC
Confidence 579999999999999999999999999999999999987 7899999999987531 12 257999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+||+||+.+..... .....+.++++.++++.+|+.+..++.+++|||||||||+||++|+.+|++++|||||+|||
T Consensus 101 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD 177 (233)
T PRK11629 101 DFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177 (233)
T ss_pred CCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 999999999876432 22334455678999999999998999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecCh
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~ 246 (606)
+.++..+.+.|++++++.|+|+|+++|++. ++.. +|++++|++|+++..|+.
T Consensus 178 ~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 178 ARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence 999999999999997656899999999864 4554 689999999999988764
No 82
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.1e-42 Score=343.26 Aligned_cols=192 Identities=26% Similarity=0.422 Sum_probs=169.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCC-CCCCCCHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTD-LIPSLTVEQ 118 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~-~~~~lTV~e 118 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.....++.++|++|++. .+..+||.|
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK-ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence 579999999999999999999999999999999999987 789999999998754445678999999974 345679999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+..... .. ..++++++++.+++.+..++++++||||||||++||+||+.+|++++|||||+|||+.++..
T Consensus 92 ~l~~~~~~~-----~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 164 (205)
T cd03226 92 ELLLGLKEL-----DA--GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMER 164 (205)
T ss_pred HHhhhhhhc-----Cc--cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHH
Confidence 998865421 11 12567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI 241 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v 241 (606)
+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|+++
T Consensus 165 l~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 165 VGELIRELAA-QGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 9999999975 488999999976 4688899999999999874
No 83
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.4e-42 Score=341.50 Aligned_cols=196 Identities=29% Similarity=0.443 Sum_probs=174.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||.
T Consensus 12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (208)
T cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAR 90 (208)
T ss_pred CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHH
Confidence 4579999999999999999999999999999999999987 789999999987643 23456799999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.+..... .. ..++++++++.+++.+..+++++.|||||||||+||++|+.+|++++|||||+|||+.++.
T Consensus 91 e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 163 (208)
T cd03268 91 ENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIK 163 (208)
T ss_pred HHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHH
Confidence 9998876432 11 1356788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
.+.+.|+++++ .++|+|+++|++ +++.+++|++++|++|++++.|
T Consensus 164 ~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 164 ELRELILSLRD-QGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 99999999876 589999999976 4788899999999999998765
No 84
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-42 Score=348.87 Aligned_cols=210 Identities=23% Similarity=0.347 Sum_probs=180.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---c-ccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---L-FQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~-~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++... . .+..++|++|++.+++.+
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (255)
T PRK11300 17 GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK-PTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREM 95 (255)
T ss_pred CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-CCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCC
Confidence 3579999999999999999999999999999999999987 7899999999987431 1 245689999999999999
Q ss_pred CHHHHHHHHHHccCC----------CCC--CHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEE
Q psy10223 115 TVEQTLYYAAHLSIG----------PQV--SRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLL 182 (606)
Q Consensus 115 TV~e~l~f~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~ll 182 (606)
||.||+.++...... ... ...+..+++.++++.+|+.+..++++++|||||||||+||+||+.+|+++
T Consensus 96 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 175 (255)
T PRK11300 96 TVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEIL 175 (255)
T ss_pred cHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999986431100 000 11123456788999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 183 LLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 183 llDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+|||||+|||+.++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 176 llDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 176 MLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQGTPLANGTPEEIR 242 (255)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEecCCHHHHh
Confidence 999999999999999999999999775589999999975 5788999999999999999999987753
No 85
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.8e-43 Score=339.63 Aligned_cols=212 Identities=25% Similarity=0.456 Sum_probs=198.7
Q ss_pred ccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCC
Q psy10223 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 35 ~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~l 114 (606)
++.+++.+++|+||+|+||||++++|||||||||.+|+|.|++. +++|+|.++|.+++. ..+.+|||+|++..++|.+
T Consensus 10 K~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle-~~~G~I~~~g~~~~~-~~~~rIGyLPEERGLy~k~ 87 (300)
T COG4152 10 KSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-PTEGEITWNGGPLSQ-EIKNRIGYLPEERGLYPKM 87 (300)
T ss_pred hccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC-ccCceEEEcCcchhh-hhhhhcccChhhhccCccC
Confidence 34456789999999999999999999999999999999999998 789999999999874 4567899999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.|.|.|.++++ ++++++.++++..+|+++++.....+++.+||.|++|++.+..+++++|++++||||+|||||.
T Consensus 88 tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPV 164 (300)
T COG4152 88 TVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPV 164 (300)
T ss_pred cHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChh
Confidence 9999999999975 6788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYF 253 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f 253 (606)
+...+.+.+.++++ .|.|||+++|. .+.+.++||++++|++|+.|.+|+.++++.-|
T Consensus 165 N~elLk~~I~~lk~-~GatIifSsH~-Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 165 NVELLKDAIFELKE-EGATIIFSSHR-MEHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred hHHHHHHHHHHHHh-cCCEEEEecch-HHHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 99999999999976 59999999986 67899999999999999999999999998754
No 86
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-42 Score=350.74 Aligned_cols=209 Identities=22% Similarity=0.374 Sum_probs=180.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.. ..+++.++|++|+..+++.+||
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 102 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP-PSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTV 102 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccH
Confidence 579999999999999999999999999999999999987 789999999987642 2356689999999888899999
Q ss_pred HHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 117 EQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 117 ~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
.||+.+....... ....+....+++.++++.+++.+..++++++|||||||||+||+||+.+|++++|||||+|||+.+
T Consensus 103 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~ 182 (265)
T PRK10575 103 RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 9999875321100 001112334568899999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+..+.+.|++++++.|.|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 183 ~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 183 QVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999865689999999975 4788999999999999999999887653
No 87
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=9.4e-42 Score=347.23 Aligned_cols=208 Identities=23% Similarity=0.368 Sum_probs=182.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----------------ccccCeEE
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----------------QLFQTTCG 102 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----------------~~~~~~i~ 102 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 12 ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP-IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 3579999999999999999999999999999999999987 789999999987632 12467899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEE
Q psy10223 103 YVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLL 182 (606)
Q Consensus 103 yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~ll 182 (606)
|++|++.+++.+||.||+.++.... ......+..+++.++++.+|+.+..++.++.||||||||++||++|+.+|+++
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 168 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVM 168 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999998864311 12334445567889999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 183 LLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 183 llDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+|||||+|||+.++..+.+.|++++++.|.|+|+++|++ +++.+++|++++|++|++++.|+.++..
T Consensus 169 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 169 LFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999875689999999986 4688999999999999999999987653
No 88
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=347.36 Aligned_cols=202 Identities=28% Similarity=0.419 Sum_probs=178.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. .+..++|++|++.+++.+||.|
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e 89 (255)
T PRK11248 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP-YQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQD 89 (255)
T ss_pred CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHH
Confidence 3579999999999999999999999999999999999987 789999999998753 2346899999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+....+ .....+..+++.++++.+|+.+..++++..|||||||||+||++|+.+|++++|||||+|||+.++..
T Consensus 90 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~ 166 (255)
T PRK11248 90 NVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ 166 (255)
T ss_pred HHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 998865432 23344455678999999999998999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc--CCeEEEecChh
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC--LGDLIYAGPTR 247 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~--~G~~v~~G~~~ 247 (606)
+.+.|++++++.|+|+|+++|++ +++.++||++++|+ +|+++..++.+
T Consensus 167 l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 167 MQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999998665689999999976 47889999999998 59999887754
No 89
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-42 Score=345.20 Aligned_cols=207 Identities=25% Similarity=0.418 Sum_probs=182.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~~l 114 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+
T Consensus 15 ~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T PRK10895 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP-RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRL 93 (241)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccC
Confidence 3579999999999999999999999999999999999987 789999999998743 12456799999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.||+.+..... ......+.++++.++++.+++.+..+++++.|||||||||+||++|+.+|++++|||||+|||+.
T Consensus 94 tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 171 (241)
T PRK10895 94 SVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 171 (241)
T ss_pred cHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 9999998765322 11233345567889999999999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|++++.|++++..
T Consensus 172 ~~~~l~~~l~~~~~-~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 172 SVIDIKRIIEHLRD-SGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred HHHHHHHHHHHHHh-cCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 99999999999875 588999999975 5788999999999999999999987753
No 90
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-42 Score=366.89 Aligned_cols=208 Identities=25% Similarity=0.405 Sum_probs=185.9
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---cc----ccCeEEEEcCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QL----FQTTCGYVNHRTDL 110 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~----~~~~i~yv~q~~~~ 110 (606)
+...+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. .. .++.++|++|++.+
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~-p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE-PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 44568999999999999999999999999999999999987 789999999998753 11 24579999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
+|++||+||+.+....+ ..+..+..+++.++++.+||.+..++++++|||||||||+||+||+.+|++|||||||+|
T Consensus 118 ~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~ 194 (400)
T PRK10070 118 MPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194 (400)
T ss_pred CCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 99999999999987543 234445567789999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||+.++.++.+.|+++.++.|+|+|+++|+. +++.+++|++++|++|+++..|+++++.
T Consensus 195 LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 195 LDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999766689999999975 5788999999999999999999988764
No 91
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.2e-41 Score=345.46 Aligned_cols=205 Identities=25% Similarity=0.436 Sum_probs=179.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCC-----eeEEEECCEeCCc-----ccccCeEEEEcCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT-----RGEIILDGTPMSP-----QLFQTTCGYVNHRT 108 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~-----~G~I~~~G~~~~~-----~~~~~~i~yv~q~~ 108 (606)
++.+|+|+|+++++||+++|+|+||||||||||+|+|+.+ +. +|+|.++|.++.. ...++.++|++|++
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 91 (247)
T TIGR00972 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND-LVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKP 91 (247)
T ss_pred CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-CCcCCCCceEEEECCEEccccccchHHHHhheEEEecCc
Confidence 3569999999999999999999999999999999999987 55 8999999998742 23467899999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
.+++ +||.||+.+....+. ..+..+..+++.++++.+|+. +..++.+++|||||||||+||+||+.+|++++|
T Consensus 92 ~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 168 (247)
T TIGR00972 92 NPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLL 168 (247)
T ss_pred ccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9998 999999998765321 123444556788999999998 778999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|++++..
T Consensus 169 DEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 169 DEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNM-QQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999875 38999999976 4788999999999999999999987763
No 92
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=7.4e-42 Score=339.31 Aligned_cols=194 Identities=28% Similarity=0.399 Sum_probs=172.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc------cccCeEEEEcCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ------LFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~------~~~~~i~yv~q~~~~~~~ 113 (606)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++... .+++.++|++|++.+++.
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 579999999999999999999999999999999999987 7899999999987421 245689999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+||.||+.+....+ .......+++++++++.+++.+..++.++.|||||||||+||+||+.+|++++|||||+|||+
T Consensus 94 ~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~ 170 (214)
T TIGR02673 94 RTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP 170 (214)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCH
Confidence 99999999876532 123344456788999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
.++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|+
T Consensus 171 ~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 171 DLSERILDLLKRLNK-RGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 999999999999875 488999999986 57888999999999985
No 93
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.5e-41 Score=346.74 Aligned_cols=207 Identities=23% Similarity=0.376 Sum_probs=181.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----------------ccccCeEE
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----------------QLFQTTCG 102 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----------------~~~~~~i~ 102 (606)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++.. ..+++.++
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (257)
T PRK10619 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-PSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLT 95 (257)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccccccccccccccchHHHHHhhceE
Confidence 4579999999999999999999999999999999999987 788999999987631 13467899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-cccCCCCCHHHHHHHHHHHHHhhCCCE
Q psy10223 103 YVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-RRNISELTPSEHRRVVIGTQLVKDPVL 181 (606)
Q Consensus 103 yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~v~~LSgGerqRvsIa~aL~~~p~l 181 (606)
|++|++.+++.+||+||+.++.... ......+.++++.++++.+|+.+.. ++.+++||||||||++||+||+.+|++
T Consensus 96 ~v~q~~~l~~~~sv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 173 (257)
T PRK10619 96 MVFQHFNLWSHMTVLENVMEAPIQV--LGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEV 173 (257)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998754211 1233445567788999999998764 889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 182 LLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 182 lllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++|||||+|||+.++..+.+.|+++++ .|+|+|+++|++ +++.++|||+++|++|++++.|+.++..
T Consensus 174 lllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 174 LLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 999999999999999999999999976 489999999975 4788899999999999999999987653
No 94
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-42 Score=353.62 Aligned_cols=206 Identities=21% Similarity=0.379 Sum_probs=181.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCC--CC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRT--DL 110 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~--~~ 110 (606)
+++|+|||++|++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++ .+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK-PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQL 98 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECccccccchHHHHHhheEEEecChHhcc
Confidence 469999999999999999999999999999999999987 789999999998742 13567899999986 45
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
++ .||.||+.+..... ..+..+..++++++++.+||. +..++.++.|||||||||+||++|+.+|++++|||||+
T Consensus 99 ~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~ 174 (286)
T PRK13646 99 FE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTA 174 (286)
T ss_pred ch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 65 59999999876421 244555667889999999997 68899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+.++..+.+.|++++++.|+|||+++|+. +++.++|||+++|++|++++.|+++++.+
T Consensus 175 ~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 175 GLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999876689999999975 47889999999999999999999887643
No 95
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=7.6e-42 Score=339.08 Aligned_cols=195 Identities=28% Similarity=0.418 Sum_probs=173.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~~~~~ 113 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL-PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD 92 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccC
Confidence 569999999999999999999999999999999999987 789999999998742 1245689999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+|++||+.+....+ ....++..++++++++.+|+.+..++++++||||||||++||+||+.+|++++|||||+|||+
T Consensus 93 ~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 169 (214)
T cd03292 93 RNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDP 169 (214)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCH
Confidence 99999999876532 123444556788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
.++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|++
T Consensus 170 ~~~~~~~~~l~~~~~-~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 170 DTTWEIMNLLKKINK-AGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999875 488999999986 477889999999999974
No 96
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-41 Score=347.58 Aligned_cols=207 Identities=29% Similarity=0.452 Sum_probs=180.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|
T Consensus 14 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (258)
T PRK13548 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS-PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFT 92 (258)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCC
Confidence 4579999999999999999999999999999999999987 789999999987642 234567999999998888899
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV------KDPVLLLLDEPTV 189 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~------~~p~llllDEPTs 189 (606)
|+||+.+..... ........++++++++.+++.+..++.++.|||||||||+||+||+ .+|++++|||||+
T Consensus 93 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~ 169 (258)
T PRK13548 93 VEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTS 169 (258)
T ss_pred HHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcc
Confidence 999998865321 1122334456889999999999999999999999999999999999 5999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|++++++.|.|||+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 170 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 170 ALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999744688999999975 4788899999999999999999887654
No 97
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.2e-41 Score=340.80 Aligned_cols=200 Identities=26% Similarity=0.386 Sum_probs=171.5
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCC--CCCC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRT--DLIP 112 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~--~~~~ 112 (606)
.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++ .+++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK-PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP 97 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence 69999999999999999999999999999999999987 789999999998743 23567899999998 4677
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHH-HHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNAR-IRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
.+||+||+.+....... ....+..++ +.++++.+++. +..++.++.|||||||||+||++|+.+|++++|||||+|
T Consensus 98 ~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~ 175 (228)
T cd03257 98 RMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSA 175 (228)
T ss_pred cCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCC
Confidence 89999999887543211 111122222 35888999995 678999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
||+.++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|+++..|
T Consensus 176 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 176 LDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999875588999999986 4678899999999999998754
No 98
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-41 Score=350.58 Aligned_cols=215 Identities=24% Similarity=0.361 Sum_probs=186.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC-CCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD-LIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~~lT 115 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .++..|
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~t 98 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL-PEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT 98 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccccc
Confidence 469999999999999999999999999999999999988 789999999998753 234668999999974 677789
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|.||+.+..... ....++..++++++++.+||.+..+++++.|||||||||+||++|+.+|++++|||||+|||+.+
T Consensus 99 v~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~ 175 (279)
T PRK13635 99 VQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRG 175 (279)
T ss_pred HHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 999998876432 23445556778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH---HHHHcCCCC
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE---YFRSIGFPC 260 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~---~f~~~G~~~ 260 (606)
+..+.+.|++++++.|+|||+++|++. ++. .||++++|++|++++.|+++++.. .++..|..+
T Consensus 176 ~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 241 (279)
T PRK13635 176 RREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIFKSGHMLQEIGLDV 241 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHhcCHHHHHHcCCCC
Confidence 999999999998766899999999864 555 599999999999999999887653 344445443
No 99
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.4e-41 Score=338.90 Aligned_cols=196 Identities=28% Similarity=0.438 Sum_probs=171.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---c---cc-CeEEEEcCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---L---FQ-TTCGYVNHRTDLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~---~~-~~i~yv~q~~~~~~ 112 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++... . ++ +.++|++|++.+++
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 96 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN-PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLP 96 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCC
Confidence 579999999999999999999999999999999999987 7899999999987431 1 23 57999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+||+||+.+....+ .....+..+++.++++.+|+.+..++.++.|||||||||+||++|+.+|++++|||||+|||
T Consensus 97 ~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 173 (221)
T TIGR02211 97 DFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLD 173 (221)
T ss_pred CCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCC
Confidence 999999998865432 12333445678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI 241 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v 241 (606)
+.++..+.+.|++++++.++|+|+++|++. .+ +.+|++++|++|+++
T Consensus 174 ~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 174 NNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 999999999999998766899999999864 45 458999999999975
No 100
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=343.40 Aligned_cols=204 Identities=24% Similarity=0.430 Sum_probs=178.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~~~~l 114 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (237)
T PRK11614 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR-ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM 95 (237)
T ss_pred CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCC
Confidence 4579999999999999999999999999999999999987 7899999999987431 2456799999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL-ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||.||+.++.... ...+..++++++++.+ ++.+..+++++.|||||||||+||++|+.+|++++|||||+|||+
T Consensus 96 tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~ 170 (237)
T PRK11614 96 TVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAP 170 (237)
T ss_pred cHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCH
Confidence 9999998864321 1222344567788888 588788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 171 ~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 171 IIIQQIFDTIEQLRE-QGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999999999876 489999999975 4789999999999999999999988764
No 101
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-42 Score=338.40 Aligned_cols=198 Identities=31% Similarity=0.523 Sum_probs=174.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++++|+|+|+++++| +++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 12 ~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 12 KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP-PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 357999999999999 999999999999999999999987 789999999987643 2346789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
.||+.+....+ ...+.+..++++++++.+++.+..++.++.|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 90 ~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 166 (211)
T cd03264 90 REFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEER 166 (211)
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 99999876532 123334456788999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
..+.+.|+++++ +.|+|+++|++ +++.+++||+++|++|+++..|
T Consensus 167 ~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 167 IRFRNLLSELGE--DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHHHHHhC--CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999974 48999999875 4678899999999999998765
No 102
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8.5e-42 Score=338.12 Aligned_cols=194 Identities=27% Similarity=0.432 Sum_probs=170.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC-CCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD-LIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~~lT 115 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .++.+|
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 92 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT 92 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCc
Confidence 579999999999999999999999999999999999987 789999999988742 234678999999975 467899
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|.||+.+..... .....+..++++++++.+++.+..+++++.|||||||||+||+||+.+|++++|||||+|||+.+
T Consensus 93 ~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~ 169 (211)
T cd03225 93 VEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAG 169 (211)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 999998865422 12333445678899999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
+..+.+.|++++++ |+|+|+++|++ +++.++||++++|++|+
T Consensus 170 ~~~~~~~l~~~~~~-~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 170 RRELLELLKKLKAE-GKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 99999999999864 89999999975 57888999999999985
No 103
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-41 Score=349.75 Aligned_cols=207 Identities=23% Similarity=0.346 Sum_probs=182.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC-CCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD-LIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~~lT 115 (606)
+.+|+|+|+++++||+++|+|+||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .+...|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK-PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPT 95 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHhheEEEecCccccccccc
Confidence 459999999999999999999999999999999999987 789999999998743 235678999999974 344679
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|.||+.+..... ........++++++++.+++.+..++.++.||||||||++||+||+.+|++++|||||+|||+.+
T Consensus 96 v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~ 172 (277)
T PRK13652 96 VEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG 172 (277)
T ss_pred HHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 999998765421 23444555678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+..+.+.|++++++.|+|+|+++|++ +++.+.|||+++|++|++++.|++++..+
T Consensus 173 ~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 173 VKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999876689999999986 47889999999999999999999988753
No 104
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-41 Score=353.38 Aligned_cols=204 Identities=25% Similarity=0.368 Sum_probs=179.2
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC---------------------------
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS--------------------------- 93 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~--------------------------- 93 (606)
.+|+|+|++|++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+..
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL-PDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKK 99 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEEeceecccccccccccccccccccccccccccch
Confidence 59999999999999999999999999999999999987 78899999987541
Q ss_pred cccccCeEEEEcCCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHH
Q psy10223 94 PQLFQTTCGYVNHRT-DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVI 171 (606)
Q Consensus 94 ~~~~~~~i~yv~q~~-~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsI 171 (606)
....++.+||++|++ ..+...||+|++.|+.... ..++++..+++.++++.+||. +..++++..|||||||||+|
T Consensus 100 ~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrval 176 (305)
T PRK13651 100 IKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVAL 176 (305)
T ss_pred HHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 123467899999985 2344579999999876532 345556677899999999996 68899999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 172 GTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 172 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|||+++|+. +++.++||||++|++|++++.|+++++.
T Consensus 177 A~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 177 AGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDL-DNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999975 589999999974 5788999999999999999999998874
No 105
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-41 Score=356.08 Aligned_cols=208 Identities=21% Similarity=0.315 Sum_probs=185.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCC--CCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRT--DLI 111 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~--~~~ 111 (606)
..+|+|||++|++||+++|+|+||||||||+++|+|+.+ +.+|+|.++|.++.. ..+|+.++|++|++ .+.
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 106 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET-PTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLN 106 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcC
Confidence 579999999999999999999999999999999999987 788999999998743 13567899999997 589
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
|.+||.+++....... ....+.+.++++.++++.+||. +..++++++|||||||||+||+||+.+|++|++||||+|
T Consensus 107 p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~ 184 (327)
T PRK11308 107 PRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSA 184 (327)
T ss_pred CccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence 9999999998766532 1234555667899999999996 478999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||..++.+++++|+++.++.|.|+|+++|+. ..+.++||+|++|++|++++.|+++++.+
T Consensus 185 LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 185 LDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999877789999999975 57888999999999999999999988753
No 106
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=347.34 Aligned_cols=196 Identities=23% Similarity=0.353 Sum_probs=175.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++. ..++.++|++|++.+++.+||+|
T Consensus 24 ~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~--~~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET-PSAGELLAGTAPLA--EAREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEHH--HhhCceEEEecCccCCCCCcHHH
Confidence 4579999999999999999999999999999999999987 78999999998763 35678999999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+... . ...+++.++++.+++.+..+++++.|||||||||+||++|+.+|++++|||||+|||+.++..
T Consensus 101 nl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~ 171 (257)
T PRK11247 101 NVGLGLK-----G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIE 171 (257)
T ss_pred HHHhccc-----c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Confidence 9987531 0 123567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChh
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~ 247 (606)
+.+.|++++++.++|+|+++|++ +++.++||++++|++|++++.|+.+
T Consensus 172 l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 172 MQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 99999998766689999999976 4678899999999999999887754
No 107
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.1e-41 Score=337.77 Aligned_cols=197 Identities=26% Similarity=0.424 Sum_probs=173.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----ccccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~~~~~ 113 (606)
++.+|+++|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 12 ~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE-PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 3579999999999999999999999999999999999987 789999999998732 2346789999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+|+.||+.+..... ......+..+++.++++.+|+.+..++.+++|||||||||+||+||+.+|++++|||||+|||+
T Consensus 91 ~t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~ 168 (213)
T cd03262 91 LTVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP 168 (213)
T ss_pred CcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 99999998864311 1233344556788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
.++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|++
T Consensus 169 ~~~~~l~~~l~~~~~-~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 169 ELVGEVLDVMKDLAE-EGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999976 588999999975 578899999999999974
No 108
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.2e-41 Score=342.30 Aligned_cols=208 Identities=25% Similarity=0.377 Sum_probs=180.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 14 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (242)
T TIGR03411 14 GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL 92 (242)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCC
Confidence 3579999999999999999999999999999999999987 7899999999876431 1345799999999999999
Q ss_pred CHHHHHHHHHHccCC--C---CCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 115 TVEQTLYYAAHLSIG--P---QVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 115 TV~e~l~f~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
||+||+.+....... . ...+++.+++++++++.+|+.+..++.++.|||||||||+||+||+.+|++++|||||+
T Consensus 93 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~ 172 (242)
T TIGR03411 93 TVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVA 172 (242)
T ss_pred CHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 999999886532100 0 01223345678899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|++++..
T Consensus 173 ~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 173 GMTDEETEKTAELLKSLAG--KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred CCCHHHHHHHHHHHHHHhc--CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 9999999999999999864 58999999975 5788999999999999999999877653
No 109
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-41 Score=347.71 Aligned_cols=210 Identities=18% Similarity=0.316 Sum_probs=181.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|
T Consensus 19 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 97 (265)
T PRK10253 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-PAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT 97 (265)
T ss_pred CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCc
Confidence 4579999999999999999999999999999999999987 788999999998642 234567999999999999999
Q ss_pred HHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 116 VEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 116 V~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
|.|++.+......+ .....+...+++.++++.+++.+..++.++.||||||||++||+||+.+|++++|||||+|||+.
T Consensus 98 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~ 177 (265)
T PRK10253 98 VQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDIS 177 (265)
T ss_pred HHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 99999875311100 00111233456889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++..+.+.|++++++.|.|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 178 ~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 178 HQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999865588999999976 4789999999999999999999987764
No 110
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.6e-41 Score=362.65 Aligned_cols=210 Identities=22% Similarity=0.371 Sum_probs=187.1
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCE----eCCc---c---cc-cCeEEEE
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT----PMSP---Q---LF-QTTCGYV 104 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~----~~~~---~---~~-~~~i~yv 104 (606)
+++...+|+|+||++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|. ++.. . .. ++.++|+
T Consensus 33 ~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~-p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 33 ETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP-VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred hhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 3456789999999999999999999999999999999999987 78999999996 3321 1 12 3579999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 105 NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 105 ~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
+|++.++|++||.||+.++...+ +.++.+.++++.++++.+||.+..++++.+|||||||||+|||||+.+|+++||
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLl 188 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLM 188 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999986532 244555667889999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||||+|||+.++.++.+.|+++.++.++|+|+++|+. +++.+++||+++|++|+++..|+++++.
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 189 DEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999876689999999975 5789999999999999999999998875
No 111
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-41 Score=342.79 Aligned_cols=205 Identities=29% Similarity=0.409 Sum_probs=179.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---------ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---------QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---------~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 14 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 14 AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM-PRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 3579999999999999999999999999999999999987 789999999997620 124668999999999
Q ss_pred CCCCCCHHHHHHHH-HHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 110 LIPSLTVEQTLYYA-AHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 110 ~~~~lTV~e~l~f~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
+++.+||.||+.+. .... .....+..+++.++++.+|+.+..++.++.|||||||||+||+||+.+|++++|||||
T Consensus 93 ~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt 169 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169 (242)
T ss_pred ccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999999999753 2221 1233444567889999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
+|||+.++..+.+.|+++++ .|+|+|+++|++ +++.+++|++++|++|++++.|++++.
T Consensus 170 ~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 170 AALDPEITAQIVSIIRELAE-TGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred CcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 99999999999999999875 589999999986 467889999999999999999987754
No 112
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-41 Score=346.48 Aligned_cols=216 Identities=19% Similarity=0.332 Sum_probs=185.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC-CCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD-LIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~~lT 115 (606)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. +++..|
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 100 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-VKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSI 100 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHhheeEEEeChHHhccccc
Confidence 459999999999999999999999999999999999987 789999999998743 235678999999975 788889
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
+.+|+.+..... ....++..++++++++.+++.+..+++++.||||||||++||+||+.+|++++|||||+|||+.+
T Consensus 101 v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~ 177 (269)
T PRK13648 101 VKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDA 177 (269)
T ss_pred HHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 999998875422 23344455678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH---HHHHcCCCCC
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE---YFRSIGFPCP 261 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~---~f~~~G~~~~ 261 (606)
+..+.+.|++++++.|+|+|+++|++. ++.. +|++++|++|++++.|++++..+ .+...|.++|
T Consensus 178 ~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 178 RQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 999999999997656899999999874 5654 99999999999999999887643 3334454443
No 113
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-41 Score=351.34 Aligned_cols=204 Identities=25% Similarity=0.380 Sum_probs=179.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCC--CC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRT--DL 110 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~--~~ 110 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++ .+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 98 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK-PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQL 98 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhh
Confidence 469999999999999999999999999999999999988 789999999998642 23456899999996 34
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+ .+||.||+.+..... ....++..++++++++.+||+ +..++++++|||||||||+||+||+.+|++|+|||||+
T Consensus 99 ~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~ 174 (287)
T PRK13641 99 F-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAA 174 (287)
T ss_pred c-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 4 589999998865432 234455566789999999997 68899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|+++++ .|.|+|+++|+. +++.++||++++|++|+++..|+++++.
T Consensus 175 gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 175 GLDPEGRKEMMQLFKDYQK-AGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999975 589999999975 5788999999999999999999988764
No 114
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-41 Score=342.97 Aligned_cols=208 Identities=27% Similarity=0.389 Sum_probs=179.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc---ccccCeEEEEcCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLI 111 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~ 111 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ +.+|+|.++|.++.. ...++.++|++|++.++
T Consensus 15 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 94 (250)
T PRK14247 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94 (250)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence 35799999999999999999999999999999999999863 368999999998742 23567899999999889
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
+.+||.||+.+....... .....+..+++.++++.+++. +..++.+++|||||||||+||+||+.+|++++||||
T Consensus 95 ~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP 173 (250)
T PRK14247 95 PNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEP 173 (250)
T ss_pred CCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999987543211 113344556788999999985 357889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 174 ~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 174 TANLDPENTAKIESLFLELKK--DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred CccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999853 68999999976 4678899999999999999999988764
No 115
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-41 Score=355.76 Aligned_cols=215 Identities=20% Similarity=0.312 Sum_probs=183.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------------------ccccCe
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------------------QLFQTT 100 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------------------~~~~~~ 100 (606)
+.+|+|+|+++++||+++|+|+||||||||+|+|+|+.+ +.+|+|.++|.++.. ..+++.
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK-SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRR 117 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEECCEEcccccccccccccccccccchHHHHHhc
Confidence 469999999999999999999999999999999999987 789999999987632 135678
Q ss_pred EEEEcCCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhh
Q psy10223 101 CGYVNHRT--DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVK 177 (606)
Q Consensus 101 i~yv~q~~--~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~ 177 (606)
++|++|++ .+++ .||+||+.++.... ..+..+..+++.++++.+||. +..++.+.+|||||||||+||+||+.
T Consensus 118 ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~ 193 (320)
T PRK13631 118 VSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAI 193 (320)
T ss_pred EEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 99999986 4665 49999998875421 234555567788999999997 67899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH---HHH
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE---YFR 254 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~---~f~ 254 (606)
+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++ +++.++||++++|++|+++..|+++++.+ .++
T Consensus 194 ~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~ 271 (320)
T PRK13631 194 QPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTM-EHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIIN 271 (320)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHH
Confidence 9999999999999999999999999999875 489999999975 46889999999999999999999987642 233
Q ss_pred HcCCCCC
Q psy10223 255 SIGFPCP 261 (606)
Q Consensus 255 ~~G~~~~ 261 (606)
..|...|
T Consensus 272 ~~~~~~p 278 (320)
T PRK13631 272 STSIQVP 278 (320)
T ss_pred HcCCCCC
Confidence 4444433
No 116
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.5e-41 Score=336.99 Aligned_cols=197 Identities=27% Similarity=0.378 Sum_probs=173.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc------cc-cCeEEEEcCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ------LF-QTTCGYVNHRTDLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~------~~-~~~i~yv~q~~~~~~ 112 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... .. ++.++|++|++.+++
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD-GSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIP 101 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCC
Confidence 359999999999999999999999999999999999987 7899999999987431 12 357999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+||.||+.+....+ .....+.++++.++++.+++.+..++.+..||||||||++||++|+.+|++++|||||+|||
T Consensus 102 ~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD 178 (228)
T PRK10584 102 TLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178 (228)
T ss_pred CcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 999999998865432 12334456778999999999998999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEE
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIY 242 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~ 242 (606)
+.++..+.+.|++++++.|.|||+++|++. .+ +.+|++++|++|++++
T Consensus 179 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 179 RQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 999999999999997666889999999864 45 5699999999999875
No 117
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.6e-41 Score=337.47 Aligned_cols=197 Identities=24% Similarity=0.335 Sum_probs=174.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---c---cccCeEEEEcCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---Q---LFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~---~~~~~i~yv~q~~~~~~~ 113 (606)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. . .+++.++|++|++.+++.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER-PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD 93 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence 579999999999999999999999999999999999987 789999999987642 1 146789999999998899
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+||.||+.+..... .....+..++++++++.+++.+..++.++.|||||||||+||+||+.+|++++|||||+|||+
T Consensus 94 ~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 170 (222)
T PRK10908 94 RTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDD 170 (222)
T ss_pred ccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCH
Confidence 99999998875432 233444456788899999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEE
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIY 242 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~ 242 (606)
.++..+.+.|+++++ .+.|+|+++|++ +++.+.||++++|++|+++.
T Consensus 171 ~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 171 ALSEGILRLFEEFNR-VGVTVLMATHDI-GLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEcc
Confidence 999999999999976 478999999976 47888999999999999753
No 118
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.6e-41 Score=360.26 Aligned_cols=200 Identities=29% Similarity=0.429 Sum_probs=179.4
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++++||+
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR 93 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence 9999999999999999999999999999999987 789999999988742 12456799999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.++.... ...+.+++++++++.+||.+..++++++|||||||||+||+||+.+|++++|||||+|||+.++.
T Consensus 94 enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~ 168 (354)
T TIGR02142 94 GNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKY 168 (354)
T ss_pred HHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 9999876421 22334567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.+.+.|++++++.|+|+|+++|++ +++.+++|++++|++|+++..|+++++..
T Consensus 169 ~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 169 EILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 999999999876689999999976 57889999999999999999999887753
No 119
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-41 Score=344.33 Aligned_cols=205 Identities=22% Similarity=0.424 Sum_probs=177.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+|+||||||||||+|+|+.++ +++|+|.++|.++.. ...++.++|++|++.
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 45799999999999999999999999999999999999763 368999999988642 134667999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC----chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ +||+||+.+..... ..+..+..++++++++.+++ .+..+++++.|||||||||+||+||+.+|++++||
T Consensus 104 ~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 179 (258)
T PRK14268 104 PFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFD 179 (258)
T ss_pred cCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 888 89999999876432 23344445668889999988 35678899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 180 EPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 180 EPTSALDPISTARIEDLIMNLKK--DYTIVIVTHNM-QQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred CCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999853 68999999975 4788999999999999999999988763
No 120
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-41 Score=354.29 Aligned_cols=209 Identities=20% Similarity=0.271 Sum_probs=182.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC---CCeeEEEECCEeCCc---cc----ccCeEEEEcCCC-
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSP---QL----FQTTCGYVNHRT- 108 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~---~~~G~I~~~G~~~~~---~~----~~~~i~yv~q~~- 108 (606)
..+|+||||+|++||+++|+|+||||||||+++|+|+.++ +++|+|.++|.++.. +. .++.++|++|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 5699999999999999999999999999999999999863 368999999998743 11 234799999997
Q ss_pred -CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch---hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 109 -DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN---VARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 109 -~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
.+.|.+||.+++....... ....+++.++++.++|+.+||.+ ..++++++|||||||||+||+||+.+|++|++
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llil 177 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVH--QGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIA 177 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 4899999999987765432 12345566778999999999964 57899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||+|||+.++.+++++|+++.++.|.|+|+++|+. +.+.+++|||++|++|++++.|+++++.+
T Consensus 178 DEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 178 DEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 9999999999999999999999877789999999975 46788999999999999999999988753
No 121
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-41 Score=335.33 Aligned_cols=195 Identities=26% Similarity=0.426 Sum_probs=171.6
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHHHHHHHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVEQTLYYA 123 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~e~l~f~ 123 (606)
|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||+||+.+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 94 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET-PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLG 94 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcc
Confidence 9999999999999999999999999999999987 789999999998743 12356799999999999999999999876
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy10223 124 AHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203 (606)
Q Consensus 124 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L 203 (606)
..... .. .++.++++.++++.+++.+..++++.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 95 ~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l 171 (211)
T cd03298 95 LSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV 171 (211)
T ss_pred ccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 43211 11 1234557889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 204 ~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
++++++.++|+|+++|++ +++.++||++++|++|+++..|
T Consensus 172 ~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 172 LDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 999866689999999975 5788999999999999998654
No 122
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.2e-41 Score=337.74 Aligned_cols=200 Identities=31% Similarity=0.482 Sum_probs=170.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCC--CCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLI--PSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~--~~lTV 116 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++. ..++.++|++|++.+. +.+||
T Consensus 11 ~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 3579999999999999999999999999999999999987 78999999998764 3467899999998763 34899
Q ss_pred HHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 117 EQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 117 ~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
.||+.+....... .........++++++++.+++.+..+++++.|||||||||+||+||+.+|++++|||||+|||+.+
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~ 167 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT 167 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 9999886432110 001122345678899999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
+..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++| +++.|
T Consensus 168 ~~~l~~~l~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 168 QEDIYELLRELRR-EGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999976 588999999975 4788999999999876 66654
No 123
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.9e-41 Score=340.13 Aligned_cols=203 Identities=27% Similarity=0.361 Sum_probs=177.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (230)
T TIGR03410 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL 90 (230)
T ss_pred CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCC
Confidence 4579999999999999999999999999999999999987 7899999999886431 1356799999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA-LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
|+.||+.+..... ... ..+..+++++.++ +.+..++.++.||||||||++||++|+.+|++++|||||+|||+
T Consensus 91 tv~~~l~~~~~~~---~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~ 164 (230)
T TIGR03410 91 TVEENLLTGLAAL---PRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQP 164 (230)
T ss_pred cHHHHHHHHHHhc---Ccc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCH
Confidence 9999998876432 111 1234567778776 67788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.++.++.+.|++++++.++|+|+++|++ +++.++||++++|++|+++..|+.+++
T Consensus 165 ~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 165 SIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999765589999999975 578889999999999999999998776
No 124
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-41 Score=346.02 Aligned_cols=206 Identities=19% Similarity=0.323 Sum_probs=179.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----ccccCeEEEEcCCCC-CCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD-LIP 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~-~~~ 112 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .+.
T Consensus 13 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR-PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 3569999999999999999999999999999999999987 789999999998731 134567999999975 344
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
..|+.||+.+..... .....+..++++++++.+|+.+..+++++.||||||||++||++|+.+|+++||||||+|||
T Consensus 92 ~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD 168 (271)
T PRK13638 92 YTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLD 168 (271)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 568999998865432 23344445678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+.++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 169 ~~~~~~l~~~l~~~~~-~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 169 PAGRTQMIAIIRRIVA-QGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999975 488999999975 4788999999999999999999988764
No 125
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-41 Score=346.43 Aligned_cols=204 Identities=25% Similarity=0.386 Sum_probs=177.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCC--CC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRT--DL 110 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~--~~ 110 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++ .+
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV-PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL 98 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhh
Confidence 469999999999999999999999999999999999987 789999999988642 23466799999996 35
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
++ .||+||+.+..... ..+.++..++++++++.+++. ...++++++|||||||||+||+||+.+|+++||||||+
T Consensus 99 ~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 174 (280)
T PRK13649 99 FE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTA 174 (280)
T ss_pred cc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 55 69999998865422 233444556788999999997 46799999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|+++++ .++|||+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 175 ~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 175 GLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred cCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999976 489999999976 4788999999999999999999988764
No 126
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=4.1e-41 Score=339.43 Aligned_cols=203 Identities=27% Similarity=0.417 Sum_probs=177.6
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEc-CCCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVN-HRTDLIPS 113 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~-q~~~~~~~ 113 (606)
++.+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.+... ..+++.++|++ |++.+++.
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 345689999999999999999999999999999999999987 789999999987532 23567899997 55678899
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+||+|++.+..... .....+..+++.++++.+++.+..+++++.||||||||++||++|+.+|++++|||||+|||+
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 186 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 99999998876532 223344456678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
.++..+.+.|++++++.++|+|+++|++ +++.++||++++|++|++++.|
T Consensus 187 ~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 187 VAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999876688999999986 4788999999999999998765
No 127
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2.4e-41 Score=339.86 Aligned_cols=201 Identities=28% Similarity=0.401 Sum_probs=175.7
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHH
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYY 122 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f 122 (606)
|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++... ....+|++|++.+++.+||.||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~--~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ-PTSGGVILEGKQITEP--GPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCC--ChhheEEecCcccCCCCCHHHHHHH
Confidence 579999999999999999999999999999999987 7899999999987532 1235899999999999999999988
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy10223 123 AAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202 (606)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~ 202 (606)
...... ....+.+..++++++++.+++.+..++.+++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 78 ~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 78 AVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred HHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 643111 1233444556788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhH
Q psy10223 203 LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRL 248 (606)
Q Consensus 203 L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~ 248 (606)
|++++++.|+|+|+++|++ +++.++||++++|++|+++..|+..+
T Consensus 157 l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 157 LMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCcee
Confidence 9999876689999999976 47889999999999999998886544
No 128
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-41 Score=336.82 Aligned_cols=207 Identities=27% Similarity=0.409 Sum_probs=183.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-cccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-LFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
.+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|+.
T Consensus 12 ~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-PTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 3579999999999999999999999999999999999987 7889999999987531 2356799999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.+....+ ........+++.++++.+|+.+..++.+..||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 91 ~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~ 167 (232)
T cd03300 91 ENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRK 167 (232)
T ss_pred HHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 9998876532 2233344567888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.+.+.|++++++.|+|+|+++|++ +++.++||++++|++|++++.|+.++..
T Consensus 168 ~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 168 DMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 999999999875689999999986 4688999999999999999999876653
No 129
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=7.2e-41 Score=337.82 Aligned_cols=207 Identities=24% Similarity=0.384 Sum_probs=183.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
.+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|+.
T Consensus 12 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ-PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 4579999999999999999999999999999999999987 788999999998753 22356799999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.+....+ ........+++.++++.+++.+..++.++.||+|||||++||++|+.+|++++|||||+|||+.++.
T Consensus 91 enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~ 167 (237)
T TIGR00968 91 DNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRK 167 (237)
T ss_pred HHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 9998876532 1233344567789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.+.+.|++++++.++|+|+++|++ +++.++||++++|++|++++.|+.++..
T Consensus 168 ~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 168 ELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 999999998765589999999986 4688999999999999999999988764
No 130
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-41 Score=345.86 Aligned_cols=206 Identities=22% Similarity=0.382 Sum_probs=180.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC-CCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD-LIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~~l 114 (606)
.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++. .++.+
T Consensus 21 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (271)
T PRK13632 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK-PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGA 99 (271)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcc
Confidence 3569999999999999999999999999999999999987 789999999998753 235678999999974 67789
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||+||+.+..... .....+.++++.++++.+++.+..++.++.||||||||++||+||+.+|++++|||||+|||+.
T Consensus 100 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~ 176 (271)
T PRK13632 100 TVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176 (271)
T ss_pred cHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 9999998875421 2334445567889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++..+.+.|++++++.++|+|+++|++. ++ ..||++++|++|+++..|+++++.
T Consensus 177 ~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 177 GKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999997655689999999874 45 479999999999999999987764
No 131
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=4.8e-41 Score=344.62 Aligned_cols=208 Identities=23% Similarity=0.340 Sum_probs=181.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc------cccCeEEEEcCCC--CC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ------LFQTTCGYVNHRT--DL 110 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~------~~~~~i~yv~q~~--~~ 110 (606)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++... ..++.++|++|++ .+
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 101 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK-PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAV 101 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhc
Confidence 3579999999999999999999999999999999999987 7899999999887421 1456799999996 46
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
++.+||.|++.+..... ......+..+++.++++.+|+. ...++++++|||||||||+||+||+.+|++++|||||+
T Consensus 102 ~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~ 179 (265)
T TIGR02769 102 NPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVS 179 (265)
T ss_pred CCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 78899999998765321 1223334456788999999996 67899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|++++++.|+|+|+++|++ +.+.+++|++++|++|++++.|+++++.
T Consensus 180 ~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 180 NLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 99999999999999999875689999999975 4788899999999999999999988764
No 132
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-41 Score=341.30 Aligned_cols=207 Identities=29% Similarity=0.421 Sum_probs=178.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTDL 110 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~~ 110 (606)
+++|+|+|+++++||+++|+||||||||||+|+|+|+.++ +.+|+|.++|.++.. ..+++.++|++|++.+
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 5699999999999999999999999999999999999863 258999999998741 2356789999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
++.+||.||+.+....+. .....++..++++++++.+++. +..++.+++|||||||||+||+||+.+|++++|||
T Consensus 97 ~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 175 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175 (253)
T ss_pred CCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999999988754321 1113334456788899999984 45788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 176 P~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 176 PTANIDPVGTAKIEELLFELKK--EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred CCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999864 58999999976 4788999999999999999999988764
No 133
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-41 Score=346.59 Aligned_cols=204 Identities=21% Similarity=0.341 Sum_probs=180.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCC-CCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTD-LIPSL 114 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~-~~~~l 114 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .++..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR-PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR 93 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccc
Confidence 469999999999999999999999999999999999987 789999999998742 234678999999975 46678
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.||+.+..... ..+..+..+++.++++.+|+.+..+++++.|||||||||+||+||+.+|++++|||||+|||+.
T Consensus 94 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~ 170 (274)
T PRK13644 94 TVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPD 170 (274)
T ss_pred hHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 9999998875422 2345555667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++..+.+.|+++++ .|.|+|+++|++. ++ +.||++++|++|++++.|+++++.
T Consensus 171 ~~~~l~~~l~~l~~-~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 171 SGIAVLERIKKLHE-KGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999975 5899999999864 55 579999999999999999988764
No 134
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=4.4e-41 Score=344.28 Aligned_cols=210 Identities=25% Similarity=0.400 Sum_probs=179.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC--CeeEEEECCEeCCc--------ccccCeEEEEcCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT--TRGEIILDGTPMSP--------QLFQTTCGYVNHRT 108 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~--~~G~I~~~G~~~~~--------~~~~~~i~yv~q~~ 108 (606)
++++|+|+|+++++||+++|+|||||||||||++|+|..++. .+|+|.++|.++.. ...++.++|++|++
T Consensus 16 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 457999999999999999999999999999999999998632 25999999987642 12356799999999
Q ss_pred CCCCCCCHHHHHHHHHHccCC-----CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIG-----PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
.+++.+||.||+.+......+ ......+.+++++++++.+|+.+..++.++.|||||||||+||+||+.+|++++
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 175 (262)
T PRK09984 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVIL 175 (262)
T ss_pred ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999876421100 001122345678999999999998999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|||||+|||+.++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|++++.|++++.
T Consensus 176 lDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 176 ADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred ecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 99999999999999999999999866689999999986 468899999999999999999987754
No 135
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=7.1e-41 Score=338.51 Aligned_cols=210 Identities=21% Similarity=0.261 Sum_probs=177.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CCCeeEEEECCEeCCc---cc-ccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GTTRGEIILDGTPMSP---QL-FQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~~~G~I~~~G~~~~~---~~-~~~~i~yv~q~~~~~~~ 113 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ .+.+|+|.++|.++.. .. .+..++|++|++.+++.
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (243)
T TIGR01978 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPG 91 (243)
T ss_pred CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCC
Confidence 4579999999999999999999999999999999999952 3788999999998643 11 23458999999999999
Q ss_pred CCHHHHHHHHHHccCCC----CCCHHHHHHHHHHHHHHcCCc-hhhcccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 114 LTVEQTLYYAAHLSIGP----QVSRYVRNARIRQVLADLALS-NVARRNIS-ELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~----~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~-~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
+|+.|++.+........ .....+..+++.++++.+++. +..++.+. +|||||||||+||++|+.+|++++||||
T Consensus 92 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 171 (243)
T TIGR01978 92 VSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEI 171 (243)
T ss_pred cCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 99999998865421110 112233456788999999997 56788887 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc-CCeEEEEcCCeEEEecChhHHH
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF-LDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~-~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+|||+.++..+.+.|+++++ .|+|+|+++|++ +.+... ||++++|++|++++.|+++++.
T Consensus 172 t~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 172 DSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred cccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecH-HHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 999999999999999999975 588999999986 467777 8999999999999999987544
No 136
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-41 Score=337.60 Aligned_cols=202 Identities=22% Similarity=0.395 Sum_probs=177.2
Q ss_pred EeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-cccCeEEEEcCCCCCCCCCCHHHHHHH
Q psy10223 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-LFQTTCGYVNHRTDLIPSLTVEQTLYY 122 (606)
Q Consensus 44 ~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-~~~~~i~yv~q~~~~~~~lTV~e~l~f 122 (606)
.|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT-PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhc
Confidence 38999999999999999999999999999999987 7899999999987531 234679999999999999999999987
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy10223 123 AAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202 (606)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~ 202 (606)
..... ... .+...+++.++++.+|+.+..++.++.|||||||||+||++++.+|++++|||||+|||+.++..+.+.
T Consensus 95 ~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~ 171 (232)
T PRK10771 95 GLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTL 171 (232)
T ss_pred ccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 54211 011 123456789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 203 LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 203 L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|++++++.|+|+|+++|++ +++.++||++++|++|++++.|+.++..
T Consensus 172 l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 172 VSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999775688999999986 4788999999999999999999987664
No 137
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-41 Score=336.56 Aligned_cols=204 Identities=28% Similarity=0.417 Sum_probs=181.7
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-cccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-LFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++... ..++.++|++|++.+++.+|+.||+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~-p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 92 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK-PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNI 92 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHH
Confidence 8999999999999999999999999999999999987 7899999999987531 2356899999999999999999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
.+..... .....+..+++.++++.+|+.+..+++++.|||||||||+||+||+.+|++++|||||+|||+.++..+.
T Consensus 93 ~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~ 169 (235)
T cd03299 93 AYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLR 169 (235)
T ss_pred HHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHH
Confidence 8875422 2334445567788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+.|++++++.++|+|+++|++ +++.++||++++|++|+++..|+.++..
T Consensus 170 ~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 170 EELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999765589999999986 4688899999999999999999877654
No 138
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-41 Score=357.87 Aligned_cols=196 Identities=26% Similarity=0.412 Sum_probs=177.7
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|+..++|++||+
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 94 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR-PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVR 94 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHH
Confidence 8999999999999999999999999999999987 789999999988642 12467899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.++.. ....++++++++.+|+.+..++++++|||||||||+|||||+.+|++++|||||+|||+.++.
T Consensus 95 enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~ 165 (352)
T PRK11144 95 GNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKR 165 (352)
T ss_pred HHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHH
Confidence 99988643 112456889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.+.+.|++++++.|+|+|+++|++ +++.+++|++++|++|+++..|+++++..
T Consensus 166 ~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 166 ELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999876689999999975 57899999999999999999999988753
No 139
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-41 Score=342.87 Aligned_cols=208 Identities=22% Similarity=0.368 Sum_probs=179.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|+..+++.+|
T Consensus 14 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (255)
T PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT-PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGIT 92 (255)
T ss_pred CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCcc
Confidence 4579999999999999999999999999999999999987 789999999987642 234567999999998889999
Q ss_pred HHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 116 VEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 116 V~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
+.||+.++...... .........+++.++++.+|+.+..++.++.|||||||||+||+||+.+|++++|||||+|||+.
T Consensus 93 v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 172 (255)
T PRK11231 93 VRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDIN 172 (255)
T ss_pred HHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 99999875321000 01111234456888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|+++..|+.++.
T Consensus 173 ~~~~l~~~l~~l~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 173 HQVELMRLMRELNT-QGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999875 488999999976 478899999999999999999988765
No 140
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-41 Score=344.21 Aligned_cols=205 Identities=24% Similarity=0.411 Sum_probs=179.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----ccccCeEEEEcCCCC-CCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD-LIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~-~~~~ 113 (606)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .+..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK-PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFA 93 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcc
Confidence 469999999999999999999999999999999999987 788999999998741 124678999999963 3335
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
.||.|++.+..... ...+.+..+++.++++.++|.+..++++++||||||||++||++|+.+|++++|||||+|||+
T Consensus 94 ~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~ 170 (275)
T PRK13639 94 PTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDP 170 (275)
T ss_pred ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 79999998764321 234445556788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++..+.+.|++++++ |.|||+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 171 ~~~~~l~~~l~~l~~~-~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 171 MGASQIMKLLYDLNKE-GITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHHHHHHHHHHHHHHC-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999764 89999999975 5788899999999999999999998874
No 141
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=8.5e-41 Score=331.80 Aligned_cols=199 Identities=22% Similarity=0.380 Sum_probs=175.1
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
+++|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|+.||+
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~ 91 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNI 91 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHH
Confidence 4689999999999999999999999999999999987 789999999998743 23567899999999999999999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
.+...... . ...+.+++++++++.+|+.+..++.++.||||||||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 92 ~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~ 168 (213)
T TIGR01277 92 GLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEML 168 (213)
T ss_pred HhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 87643211 1 12223456788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecC
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGP 245 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~ 245 (606)
+.|++++++.++|+|+++|++ +++.++||++++|++|+++..|.
T Consensus 169 ~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 169 ALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 999999876689999999975 46788999999999999998875
No 142
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=6.5e-41 Score=341.88 Aligned_cols=208 Identities=25% Similarity=0.367 Sum_probs=179.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|
T Consensus 13 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (256)
T TIGR03873 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR-PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLT 91 (256)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCC
Confidence 4579999999999999999999999999999999999987 788999999988643 234567999999988888899
Q ss_pred HHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 116 VEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 116 V~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
|.||+.+....... ......+..+++.++++.+++.+..++.+..|||||||||+||+||+.+|++++|||||+|||+.
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 171 (256)
T TIGR03873 92 VRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVR 171 (256)
T ss_pred HHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 99999875321000 01111233457889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
++..+.+.|+++++ .|.|+|+++|++ +++.++||++++|++|+++..|+.++.
T Consensus 172 ~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 172 AQLETLALVRELAA-TGVTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 99999999999975 478999999986 478899999999999999999998765
No 143
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-41 Score=332.63 Aligned_cols=197 Identities=26% Similarity=0.393 Sum_probs=173.0
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRTDL 110 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~~~ 110 (606)
+++.+ |+|+++++ |+++|+|||||||||||++|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+
T Consensus 11 ~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (214)
T cd03297 11 PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK-PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYAL 86 (214)
T ss_pred CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEecccccchhhhhhHhhcEEEEecCCcc
Confidence 33444 99999999 9999999999999999999999987 789999999987642 1245679999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
++.+|+.||+.+..... .....++++.++++.+|+.+..++++++||||||||++||++|+.+|++++|||||+|
T Consensus 87 ~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 161 (214)
T cd03297 87 FPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSA 161 (214)
T ss_pred CCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 99999999998765321 2233456788999999999889999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
||+.++..+.+.|++++++.|+|+|+++|++ +++.+++|++++|++|+++..|
T Consensus 162 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 162 LDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999876688999999975 4688899999999999998765
No 144
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-40 Score=344.93 Aligned_cols=206 Identities=23% Similarity=0.340 Sum_probs=181.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCe---eEEEECCEeCCc---ccccCeEEEEcCCCC-CCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMSP---QLFQTTCGYVNHRTD-LIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~---G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~ 112 (606)
+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+ |+|.++|.++.. ...++.++|++|++. .++
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~ 98 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-PDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFV 98 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-CCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhc
Confidence 469999999999999999999999999999999999987 555 999999998753 234678999999974 677
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
..||.||+.+..... ..+..+..+++.++++.+||.+..+++++.||||||||++||+||+.+|++++|||||+|||
T Consensus 99 ~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD 175 (282)
T PRK13640 99 GATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLD 175 (282)
T ss_pred cCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 899999998865422 24455556778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.++..+.+.|++++++.|+|||+++|++. ++ ..||++++|++|++++.|+++++.+
T Consensus 176 ~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 176 PAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999998766899999999864 45 5799999999999999999987753
No 145
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-41 Score=340.48 Aligned_cols=205 Identities=21% Similarity=0.351 Sum_probs=176.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTDL 110 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~~ 110 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.++ +.+|+|.++|.++.. ...++.++|++|++.+
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 99 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNP 99 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccc
Confidence 5699999999999999999999999999999999999873 258999999988632 2356789999999888
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC----chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
++ +||+||+.+...... ........++++++++.+++ .+..++++++|||||||||+||++|+.+|++++|||
T Consensus 100 ~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE 176 (254)
T PRK14273 100 FL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDE 176 (254)
T ss_pred cc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 85 899999998754321 11233445678888999887 456788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||+|||+.++..+.+.|++++ + +.|+|+++|++ +++.+++||+++|++|+++..|+++++.
T Consensus 177 Pt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 177 PTSALDPISTGKIEELIINLK-E-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred CCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999995 3 68999999976 4788999999999999999999988764
No 146
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=6.1e-41 Score=336.76 Aligned_cols=204 Identities=25% Similarity=0.352 Sum_probs=177.4
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC----CeeEEEECCEeCCcccc-cCeEEEEcCCCC--CCCCC
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIILDGTPMSPQLF-QTTCGYVNHRTD--LIPSL 114 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~----~~G~I~~~G~~~~~~~~-~~~i~yv~q~~~--~~~~l 114 (606)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+ + .+|+|.++|.++..... ++.++|++|++. +.+.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 5799999999999999999999999999999999987 5 78999999998754322 357999999984 66789
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc---hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS---NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
|+.|++.+..... ........+++.++++.+++. +..++.++.|||||||||+||++|+.+|++++|||||+||
T Consensus 80 t~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~L 156 (230)
T TIGR02770 80 TMGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDL 156 (230)
T ss_pred CHHHHHHHHHHHc---CccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 9999998765422 112233456789999999998 6789999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+.++..+.+.|++++++.++|+|+++|++ +++.+++|++++|++|+++..|+++++.
T Consensus 157 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 157 DVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999765688999999976 4788999999999999999999987764
No 147
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=9.3e-41 Score=333.74 Aligned_cols=199 Identities=29% Similarity=0.448 Sum_probs=177.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.... ++.++|++|++.+++.+|++|
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR-PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 4579999999999999999999999999999999999987 78999999998875332 357999999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+..... ... .+++.++++.+|+++..++.++.||||||||++||+|++.+|++++|||||+|||+.++..
T Consensus 90 ~~~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~ 162 (223)
T TIGR03740 90 NLKVHTTLL---GLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQE 162 (223)
T ss_pred HHHHHHHHc---CCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHH
Confidence 998766432 111 2457889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhH
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRL 248 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~ 248 (606)
+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|+++..|++.+
T Consensus 163 l~~~L~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 163 LRELIRSFPE-QGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999975 488999999986 46889999999999999999998753
No 148
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=8.3e-41 Score=343.30 Aligned_cols=207 Identities=20% Similarity=0.339 Sum_probs=180.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC--CCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD--LIPSL 114 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~--~~~~l 114 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. +++.+
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 104 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQ 104 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcch
Confidence 469999999999999999999999999999999999987 789999999998752 123457999999975 67889
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||.+++.+...... .....+..+++.++++.+++. +..++.+..|||||||||+||++|+.+|++++|||||+|||+
T Consensus 105 tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 182 (267)
T PRK15112 105 RISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDM 182 (267)
T ss_pred hHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCH
Confidence 99999988665321 223344556788999999994 678889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++..+.+.|++++++.|.|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 183 ~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 183 SMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 9999999999999876689999999976 5788899999999999999999877654
No 149
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-41 Score=338.73 Aligned_cols=202 Identities=29% Similarity=0.443 Sum_probs=177.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++ .|
T Consensus 15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID-PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 3569999999999999999999999999999999999987 789999999988642 235678999999998887 69
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
|+||+.+....+ . ...+++.++++.+++. +..++.++.|||||||||+||+||+.+|++++|||||+|||+.
T Consensus 93 v~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 165 (241)
T PRK14250 93 VKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPT 165 (241)
T ss_pred HHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 999998754321 1 1234678899999997 5789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 166 ~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 166 STEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 999999999999765689999999975 4788899999999999999999988763
No 150
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-40 Score=343.95 Aligned_cols=206 Identities=23% Similarity=0.379 Sum_probs=180.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCC-CCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTD-LIPSL 114 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~-~~~~l 114 (606)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .+...
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 101 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI-PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVAT 101 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEeccccccHHHHhhheEEEecChhhhhccc
Confidence 569999999999999999999999999999999999987 789999999998753 234678999999974 23346
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.|++.|..... ..+..+.+++++++++.+||.+..++++++|||||||||+||++|+.+|++++|||||+|||+.
T Consensus 102 ~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~ 178 (280)
T PRK13633 102 IVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178 (280)
T ss_pred cHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 9999999876422 2344555677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
++..+.+.|++++++.|.|+|+++|++. ++.. ||++++|++|+++..|+++++..
T Consensus 179 ~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 179 GRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999997656899999999875 5554 99999999999999999988753
No 151
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.5e-40 Score=350.79 Aligned_cols=209 Identities=20% Similarity=0.288 Sum_probs=182.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC--CeeEEEECCEeCCc---cc---cc-CeEEEEcCCC--
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT--TRGEIILDGTPMSP---QL---FQ-TTCGYVNHRT-- 108 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~--~~G~I~~~G~~~~~---~~---~~-~~i~yv~q~~-- 108 (606)
..+|+||||+|++||+++|+|+||||||||+++|+|+.++. .+|+|.++|.++.. .. +| +.++|++|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 57999999999999999999999999999999999998732 38999999998743 11 23 4799999998
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch---hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN---VARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
.+.|.+|+.+++........ ..++.+..+++.++++.+||.+ ..++++++|||||||||+||+||+.+|+++++|
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilD 186 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIAD 186 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 68899999999987654321 2345556678899999999974 357899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+|||+.++.++++.|+++.++.|.|+|+++|+. ..+.+++||+++|++|++++.|+++++.+
T Consensus 187 EPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 187 EPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999877789999999975 46788999999999999999999988753
No 152
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=339.14 Aligned_cols=205 Identities=25% Similarity=0.427 Sum_probs=175.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--C--CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--G--TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~--~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ + +.+|+|.++|+++.. ...++.++|++|++.
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 97 (253)
T PRK14242 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN 97 (253)
T ss_pred CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC
Confidence 3569999999999999999999999999999999999853 1 468999999988742 134678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN----VARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ .||.||+.+....+. ....+...++++++++.+++.+ ..++.++.|||||||||+||++|+.+|++++||
T Consensus 98 ~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllD 174 (253)
T PRK14242 98 PFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMD 174 (253)
T ss_pred CCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 888 599999998754321 1123344567888999999853 568889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|||+|||+.++..+.+.|++++ + ++|+|+++|++ +++.++||++++|++|+++..|+++++
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 175 EPASALDPIATQKIEELIHELK-A-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999985 3 68999999976 478899999999999999999988765
No 153
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=339.22 Aligned_cols=207 Identities=22% Similarity=0.386 Sum_probs=178.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+.+|+|+|+++++||+++|+||||||||||||+|+|+.++ +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 16 SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 35799999999999999999999999999999999999863 268999999988631 235678999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++.+||.||+.+....+. ..++.+.+++++++++.+++. +..++.+++|||||||||+||+||+.+|++++||
T Consensus 96 ~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 173 (258)
T PRK14241 96 PFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMD 173 (258)
T ss_pred cCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999999999988764321 113344456788899999984 5678899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc------CCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC------LGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~------~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|+ +|++++.|+++++.
T Consensus 174 EPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 174 EPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 99999999999999999999853 58999999975 47889999999997 79999999988764
No 154
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-40 Score=339.37 Aligned_cols=206 Identities=27% Similarity=0.443 Sum_probs=177.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--C--CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--G--TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~--~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ + +.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 25 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 104 (260)
T PRK10744 25 KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT 104 (260)
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc
Confidence 3569999999999999999999999999999999999975 1 468999999988742 235678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ .||+||+.+..... ...+..+..++++++++.+++. +..++.+++||||||||++||+||+.+|++++||
T Consensus 105 ~~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD 181 (260)
T PRK10744 105 PFP-MSIYDNIAFGVRLF--EKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLD 181 (260)
T ss_pred cCc-CcHHHHHhhhHhhc--CCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 888 89999998875422 1234444556788999999974 5578899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|++++ + +.|+|+++|++ +++.+++|++++|++|+++..|+++++.
T Consensus 182 EPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 182 EPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999985 3 68999999975 4688899999999999999999988764
No 155
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-40 Score=346.36 Aligned_cols=204 Identities=21% Similarity=0.338 Sum_probs=177.5
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--------ccccCeEEEEcCCCC--C
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--------QLFQTTCGYVNHRTD--L 110 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--------~~~~~~i~yv~q~~~--~ 110 (606)
.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++. +
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 103 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII-SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQL 103 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhh
Confidence 59999999999999999999999999999999999987 789999999987631 234678999999973 3
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
++ .||+||+.+..... .....+..+++.++++.++|. +..++.++.|||||||||+||+||+.+|++|+|||||+
T Consensus 104 ~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~ 179 (289)
T PRK13645 104 FQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTG 179 (289)
T ss_pred hh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 44 69999998865421 223444456788899999994 68899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|++++.|+.+++.
T Consensus 180 ~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 180 GLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999765689999999975 4788999999999999999999988764
No 156
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-40 Score=350.55 Aligned_cols=211 Identities=20% Similarity=0.291 Sum_probs=179.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC---CCeeEEEECCEeCCc---cc----ccCeEEEEcCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSP---QL----FQTTCGYVNHRT 108 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~---~~~G~I~~~G~~~~~---~~----~~~~i~yv~q~~ 108 (606)
.+.+|+|||++|++||+++|+|+||||||||+|+|+|+.+. +++|+|.++|+++.. .. .++.++|++|++
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 35799999999999999999999999999999999999752 468999999998742 11 235799999997
Q ss_pred C--CCCCCCHHHHHHHHHHccCCCC---CCHHHHHHHHHHHHHHcCCch---hhcccCCCCCHHHHHHHHHHHHHhhCCC
Q psy10223 109 D--LIPSLTVEQTLYYAAHLSIGPQ---VSRYVRNARIRQVLADLALSN---VARRNISELTPSEHRRVVIGTQLVKDPV 180 (606)
Q Consensus 109 ~--~~~~lTV~e~l~f~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSgGerqRvsIa~aL~~~p~ 180 (606)
. +.|.+||.+++........... ....+.++++.++|+.+||.+ ..++++++|||||||||+||+||+.+|+
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ 178 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPR 178 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCC
Confidence 5 6889999999976533110000 112234567889999999974 5689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 181 LLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 181 llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+|++||||+|||+.++.+++++|+++.++.|.|+|+++|+. +.+.+++|||++|++|++++.|+++++.
T Consensus 179 llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 179 LLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999876689999999975 5788999999999999999999988764
No 157
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=336.84 Aligned_cols=207 Identities=23% Similarity=0.398 Sum_probs=177.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--CCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--GTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~ 113 (606)
.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ .+.+|+|.++|+++.. ..+++.++|++|++.+++
T Consensus 14 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~- 92 (246)
T PRK14269 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV- 92 (246)
T ss_pred CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-
Confidence 4579999999999999999999999999999999999874 2578999999998753 235678999999998887
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
.||+||+.++...+.. .......++++.++++.+++. +..++.++.|||||||||+||+||+.+|++++|||||+
T Consensus 93 ~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~ 171 (246)
T PRK14269 93 KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTS 171 (246)
T ss_pred ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 6999999887543211 011233455678899999994 45688899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|+++.+ ++|+|+++|++ +++.+++|++++|++|++++.|++++..
T Consensus 172 ~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 172 ALDPISSGVIEELLKELSH--NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred cCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999853 78999999975 4788999999999999999999988764
No 158
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-40 Score=341.37 Aligned_cols=205 Identities=20% Similarity=0.320 Sum_probs=180.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC-CCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD-LIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~~lT 115 (606)
+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++. .++..|
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 98 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE-EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGAT 98 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCC
Confidence 459999999999999999999999999999999999987 789999999998753 235678999999974 677889
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|.||+.+..... ...+.+..++++++++.+|+.+..++++..|||||||||+||+||+.+|+++|+||||+|||+.+
T Consensus 99 v~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~ 175 (277)
T PRK13642 99 VEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTG 175 (277)
T ss_pred HHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 999998865421 23444455678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+..+.+.|++++++.|+|+|+++|+.. ++. .+|++++|++|+++..|++++..
T Consensus 176 ~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 176 RQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999998766899999999864 454 69999999999999999988764
No 159
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-40 Score=339.80 Aligned_cols=207 Identities=21% Similarity=0.380 Sum_probs=177.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.++ +.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 31 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 110 (267)
T PRK14235 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN 110 (267)
T ss_pred CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC
Confidence 35799999999999999999999999999999999999863 378999999988742 234678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN----VARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. ||.||+.+....+. ...++.+..+++.++++.+++.+ ..++.+++|||||||||+||++|+.+|++++||
T Consensus 111 ~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 188 (267)
T PRK14235 111 PFPK-SIYENVAYGPRIHG-LARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMD 188 (267)
T ss_pred CCCC-cHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 8885 99999998764321 11123334567888999999954 567889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +.+.++||++++|++|+++..|+++++.
T Consensus 189 EPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 189 EPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred CCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999864 58999999975 4788999999999999999999987763
No 160
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-40 Score=340.38 Aligned_cols=205 Identities=20% Similarity=0.378 Sum_probs=174.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+.+|+|+|++|++||+++|+|||||||||||++|+|+.+. +++|+|.++|.++.. ...++.++|++|++.
T Consensus 25 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 104 (269)
T PRK14259 25 TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN 104 (269)
T ss_pred CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence 35799999999999999999999999999999999998752 478999999988631 235678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC----chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. ||+||+.+.+..+ .... ...+++.++++.+++ .+..+++++.|||||||||+||+||+.+|++++||
T Consensus 105 l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD 179 (269)
T PRK14259 105 PFPK-SIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMD 179 (269)
T ss_pred cchh-hHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 8884 9999999876432 1222 234567788888876 45678899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC-----------CeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL-----------GDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~-----------G~~v~~G~~~~~~~ 251 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++ |+++++|+++++.+
T Consensus 180 EPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 180 EPCSALDPISTLKIEETMHELKK--NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence 99999999999999999999853 68999999975 578999999999996 67899999988753
No 161
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-40 Score=338.07 Aligned_cols=210 Identities=24% Similarity=0.378 Sum_probs=185.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-C---CCeeEEEECCEeCC---cc---cc-cCeEEEEcCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-G---TTRGEIILDGTPMS---PQ---LF-QTTCGYVNHR 107 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~---~~~G~I~~~G~~~~---~~---~~-~~~i~yv~q~ 107 (606)
...+++||||++++||+++|+|.|||||||+.+.|.|+++ + ..+|+|.++|+++. ++ .+ .+.|++++|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4579999999999999999999999999999999999986 2 24699999999763 22 23 3579999999
Q ss_pred C--CCCCCCCHHHHHHHHHHccCCCCC-CHHHHHHHHHHHHHHcCCch---hhcccCCCCCHHHHHHHHHHHHHhhCCCE
Q psy10223 108 T--DLIPSLTVEQTLYYAAHLSIGPQV-SRYVRNARIRQVLADLALSN---VARRNISELTPSEHRRVVIGTQLVKDPVL 181 (606)
Q Consensus 108 ~--~~~~~lTV~e~l~f~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSgGerqRvsIa~aL~~~p~l 181 (606)
+ .+.|.+||.+.+.-..+.+. .. ++++..+++.++|+.+|+.+ ..+.++++|||||||||.||.||+.+|++
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~L 174 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKL 174 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCE
Confidence 6 48999999999988776532 12 45567788999999999975 67999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 182 LLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 182 lllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||.||||++||...+.+++++|+++.++.|.++|+++|+. .-+.++||||+||+.|++|+.|+++++.+
T Consensus 175 lIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~g~~~~i~~ 243 (316)
T COG0444 175 LIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVEEGPVEEIFK 243 (316)
T ss_pred EEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEeCCHHHHhc
Confidence 9999999999999999999999999998899999999974 57999999999999999999999998753
No 162
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-41 Score=338.64 Aligned_cols=207 Identities=26% Similarity=0.407 Sum_probs=193.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---c---c-ccCeEEEEcCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---Q---L-FQTTCGYVNHRTDLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~---~-~~~~i~yv~q~~~~~~ 112 (606)
..-++|+|++|+.||+..|||-||||||||+|+|.++.. |++|+|+++|.++.. + . .|+++++|+|...++|
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie-pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE-PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC-CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 456899999999999999999999999999999999988 899999999998742 1 2 3568999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
+.||.||..|+.+++ ++++.+.++++.++|+.+||+...++++++|||||||||.|||||+.+|+||++|||+|+||
T Consensus 120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALD 196 (386)
T COG4175 120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALD 196 (386)
T ss_pred chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcC
Confidence 999999999999864 57888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|--+.++-+.|.++.++.++||++++|+ .+|+.++-|||.+|++|++|-.|+++|++.
T Consensus 197 PLIR~~mQdeLl~Lq~~l~KTIvFitHD-LdEAlriG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 197 PLIRTEMQDELLELQAKLKKTIVFITHD-LDEALRIGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEecC-HHHHHhccceEEEecCCeEEEeCCHHHHHc
Confidence 9999999999999998899999999986 679999999999999999999999999863
No 163
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-40 Score=335.43 Aligned_cols=206 Identities=22% Similarity=0.406 Sum_probs=175.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC--CCC--CeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS--SGT--TRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~--~~~--~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+++|+|+|+++++||+++|+||||||||||+|+|+|+. .++ .+|+|.++|.++.. ...++.++|++|++.
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 15 DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 357999999999999999999999999999999999962 123 48999999998742 234668999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN----VARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ .|+.||+.+....+. ........++++++++.+++.+ ..++.++.|||||||||+||++|+.+|++++||
T Consensus 95 ~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 171 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMD 171 (250)
T ss_pred cCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 887 599999988754321 1122234466788999999853 568889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|++++ + ++|+|+++|++ +++.++|||+++|++|++++.|+++++.
T Consensus 172 EPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 172 EPASALDPISTAKVEELIHELK-K-DYTIVIVTHNM-QQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999985 3 68999999976 4788999999999999999999998874
No 164
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-40 Score=341.32 Aligned_cols=210 Identities=24% Similarity=0.345 Sum_probs=178.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCC--------eeEEEECCEeCCc---ccccCeEEEEcCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT--------RGEIILDGTPMSP---QLFQTTCGYVNHR 107 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~--------~G~I~~~G~~~~~---~~~~~~i~yv~q~ 107 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +. +|+|.++|.++.. ...++.++|++|+
T Consensus 13 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~ 91 (272)
T PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-GGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQA 91 (272)
T ss_pred CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CcccccccCCceEEEECCEEcccCCHHHHHhhcEEeccc
Confidence 4579999999999999999999999999999999999987 55 8999999988742 2345678999999
Q ss_pred CCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh---------h
Q psy10223 108 TDLIPSLTVEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV---------K 177 (606)
Q Consensus 108 ~~~~~~lTV~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~---------~ 177 (606)
+..++.+||+||+.+....... ......+..++++++++.+++.+..++.++.|||||||||+||++|+ .
T Consensus 92 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~ 171 (272)
T PRK13547 92 AQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQ 171 (272)
T ss_pred CCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCC
Confidence 8766679999999875321100 01111234456889999999999999999999999999999999999 5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+|++++|||||+|||+.++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 172 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 172 PPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCeEEEecCHHHHc
Confidence 99999999999999999999999999999875589999999986 4788899999999999999999987763
No 165
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-40 Score=336.68 Aligned_cols=206 Identities=22% Similarity=0.371 Sum_probs=177.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+++|+|+|+++++||+++|+||||||||||||+|+|+.++ +++|+|.++|.++.. ...++.++|++|++.
T Consensus 32 ~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 111 (267)
T PRK14237 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN 111 (267)
T ss_pred CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCc
Confidence 46799999999999999999999999999999999999752 478999999998742 134678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ .||+||+.++.... ....+.+..+++.++++.+++. +..++.++.||||||||++||++|+.+|++++||
T Consensus 112 ~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD 188 (267)
T PRK14237 112 PFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMD 188 (267)
T ss_pred ccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 887 59999998875421 1123334456788899999984 4678899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|++++ + +.|+|+++|++. ++.++||++++|++|++++.|+++++.
T Consensus 189 EPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 189 EPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999985 3 689999999864 788999999999999999999988763
No 166
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-40 Score=325.06 Aligned_cols=180 Identities=28% Similarity=0.464 Sum_probs=160.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC--CCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~l 114 (606)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ +.+|+|.++|.++.. ...++.++|++|++.+++.+
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 98 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL 98 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCC
Confidence 46799999999999999999999999999999999999863 578999999998753 23567899999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||+||+.++.... .++.+..||||||||++||+||+.+|++++|||||+|||+.
T Consensus 99 tv~~~l~~~~~~~--------------------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~ 152 (202)
T cd03233 99 TVRETLDFALRCK--------------------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152 (202)
T ss_pred cHHHHHhhhhhhc--------------------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHH
Confidence 9999998764310 56788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
++..+.+.|++++++.+.|+|+++||..+++.++||++++|++|++++.|
T Consensus 153 ~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 153 TALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999987557787877787777899999999999999998765
No 167
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-40 Score=334.58 Aligned_cols=206 Identities=23% Similarity=0.401 Sum_probs=177.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+.+|+|+|+++++||+++|+||||||||||||+|+|+.++ +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95 (251)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence 35799999999999999999999999999999999998763 268999999998742 134677999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ +|+.||+.+...... .....+..+++.++++.+++. +..++.+++||||||||++||++|+.+|++++||
T Consensus 96 ~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 172 (251)
T PRK14270 96 PFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMD 172 (251)
T ss_pred cCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 888 899999998754321 112334456678899999874 4578889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++|||+++|++|++++.|+++++.
T Consensus 173 EP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 173 EPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999999999865 48999999975 5788999999999999999999988764
No 168
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-40 Score=333.80 Aligned_cols=207 Identities=24% Similarity=0.438 Sum_probs=177.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--C--CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--G--TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~--~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ + +++|+|.++|.++.. ..+++.++|++|++.
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 3579999999999999999999999999999999999974 2 258999999998742 235678999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN----VARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++.+|+.||+.+..... ......+..+++.++++.+++.+ ..++.++.||||||||++||++|+.+|++++||
T Consensus 96 ~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 173 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMD 173 (252)
T ss_pred CCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999998765432 11223344566888999999853 567889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|++++..
T Consensus 174 EP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 174 EPASALDPISTLKIEELIEELKE--KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999964 47999999975 4788999999999999999999987753
No 169
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=5.2e-40 Score=335.60 Aligned_cols=207 Identities=22% Similarity=0.293 Sum_probs=177.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe-----CCc---cc----ccCeEEEEcCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP-----MSP---QL----FQTTCGYVNHR 107 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~-----~~~---~~----~~~~i~yv~q~ 107 (606)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.+ +.. .. .++.++|++|+
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA-PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence 569999999999999999999999999999999999987 789999999987 532 11 24579999999
Q ss_pred CC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 108 TD--LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 108 ~~--~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
+. +++.+|+.||+.+..... . .....+.++++.++++.+++.+ ..++.++.|||||||||+||+||+.+|++++|
T Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llll 175 (258)
T PRK11701 98 PRDGLRMQVSAGGNIGERLMAV-G-ARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFM 175 (258)
T ss_pred cccccCccccHHHHHHHHHHHh-c-cCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 73 678899999997654321 1 1122234567889999999974 78999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||||+|||+.++..+.+.|++++++.|.|+|+++|++ +.+.+.+|++++|++|++++.|+++++.
T Consensus 176 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 176 DEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999998776689999999975 4677899999999999999999987753
No 170
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7e-41 Score=309.58 Aligned_cols=199 Identities=28% Similarity=0.411 Sum_probs=180.6
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---c---cc-cCeEEEEcCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---Q---LF-QTTCGYVNHRTDL 110 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~---~~-~~~i~yv~q~~~~ 110 (606)
....||++|++.|++||-++|+|||||||||||-+++|+.. +++|+|.+.|+++.. + .+ .+++|+|+|...+
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~-~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~L 99 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD-PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHL 99 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC-CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeec
Confidence 45689999999999999999999999999999999999988 789999999998753 1 23 4689999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
+|+||..||+...+.++. .+........+++|+.+||.+..+.++++|||||+|||+||||++..|+|||.||||-+
T Consensus 100 ip~ltAlENV~lPleL~g---e~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGN 176 (228)
T COG4181 100 IPNLTALENVALPLELRG---ESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGN 176 (228)
T ss_pred cccchhhhhccchhhhcC---CccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCC
Confidence 999999999999988753 23334456788999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEE
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIY 242 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~ 242 (606)
||..+..++.++|-.+.++.|.|.++++|+| .+..-|||.+-|.+|+++.
T Consensus 177 LD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 177 LDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred cchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 9999999999999999999999999999987 4788899999999999874
No 171
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-40 Score=338.93 Aligned_cols=206 Identities=23% Similarity=0.382 Sum_probs=175.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--C--CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--G--TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~--~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ + +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 51 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (286)
T PRK14275 51 EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN 130 (286)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC
Confidence 3569999999999999999999999999999999999753 2 378999999988642 134678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC----chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. ||.||+.+....+. ..+....++++.++++.+++ .+..++.++.|||||||||+||+||+.+|++++||
T Consensus 131 l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLD 207 (286)
T PRK14275 131 PFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLD 207 (286)
T ss_pred CCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 8885 99999998754321 11223344567888888887 35678899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 208 EPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 208 EPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNM-QQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999864 58999999975 4788899999999999999999988764
No 172
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.7e-40 Score=326.08 Aligned_cols=190 Identities=27% Similarity=0.488 Sum_probs=167.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC---c----ccccCeEEEEcCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---P----QLFQTTCGYVNHRTDLI 111 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~---~----~~~~~~i~yv~q~~~~~ 111 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++. . ...++.++|++|++.++
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK-FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 3579999999999999999999999999999999999987 78999999999853 1 12456899999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
+.+|++||+.+..... ...+.+..++++++++.+|+.+..++++++||||||||++||+||+.+|++++|||||+||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~L 165 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSL 165 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCC
Confidence 9999999999875432 2334445667899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL 235 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL 235 (606)
|+.++..+.+.|+++++ .|.|+|+++|++. ..+.||++++|
T Consensus 166 D~~~~~~l~~~l~~~~~-~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 166 DPKNRDEVLDLLLELND-EGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999876 4889999999864 45789999875
No 173
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-40 Score=335.36 Aligned_cols=206 Identities=22% Similarity=0.390 Sum_probs=176.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-C---CeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-T---TRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~---~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+.+|+|+|+++++||+++|+||||||||||||+|+|..++ + .+|+|.++|.++.. ...++.++|++|++.
T Consensus 24 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 103 (259)
T PRK14274 24 QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN 103 (259)
T ss_pred CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCc
Confidence 35799999999999999999999999999999999998752 2 58999999998742 235678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. ||.||+.+..... ....+.+..++++++++.+++. +..++.+++||||||||++||++|+.+|++++||
T Consensus 104 ~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllD 180 (259)
T PRK14274 104 PFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMD 180 (259)
T ss_pred cccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 8886 9999998865432 1112334456678899999985 3568899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 181 EPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 181 EPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999853 68999999975 4788999999999999999999988764
No 174
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-40 Score=333.07 Aligned_cols=206 Identities=27% Similarity=0.430 Sum_probs=175.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CC---CeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GT---TRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~---~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+ .+|+|.++|.++.. ..+++.++|++|++.
T Consensus 17 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 96 (252)
T PRK14239 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96 (252)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc
Confidence 3579999999999999999999999999999999999843 13 48999999998732 234678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ +||.||+.+..... . ........+++.++++.+++. +..++.+++|||||||||+||+||+.+|++++||
T Consensus 97 ~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 173 (252)
T PRK14239 97 PFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLD 173 (252)
T ss_pred cCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 887 89999998875432 1 112233456678889999874 4568899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.+.||++++|++|++++.|+.+++.
T Consensus 174 EPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 174 EPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred CCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999864 58999999975 4788999999999999999999988764
No 175
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=5e-40 Score=335.03 Aligned_cols=204 Identities=22% Similarity=0.346 Sum_probs=176.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC----CeeEEEECCEeCCcccc-cCeEEEEcCCCC--CCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIILDGTPMSPQLF-QTTCGYVNHRTD--LIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~----~~G~I~~~G~~~~~~~~-~~~i~yv~q~~~--~~~ 112 (606)
+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ + ++|+|.++|.+++.... ++.++|++|++. +.+
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~ 94 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-AGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP 94 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCcCCEEEECCeeccccccccceEEEEecCCccccCc
Confidence 469999999999999999999999999999999999987 5 78999999998754322 457999999974 556
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch---hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN---VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
.+|+.+++.+.+... .... ..+++.++++.+++.+ ..++.++.|||||||||+||+||+.+|++|+|||||+
T Consensus 95 ~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~ 169 (254)
T PRK10418 95 LHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTT 169 (254)
T ss_pred cccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 789999987654321 1122 2356889999999986 5789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|++++++.|+|+|+++|++ +++.+++|++++|++|+++..|+++++.
T Consensus 170 ~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 170 DLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999876689999999975 4678899999999999999999988764
No 176
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-40 Score=333.58 Aligned_cols=207 Identities=23% Similarity=0.425 Sum_probs=175.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--C--CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--G--TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~--~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ + +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 17 ~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 96 (251)
T PRK14244 17 SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96 (251)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc
Confidence 4579999999999999999999999999999999999864 1 368999999987642 124678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN----VARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. ||.||+.+....+ ..........+++.++++.+|+.+ ..++.+++|||||||||+||++|+.+|++++||
T Consensus 97 ~~~~-tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 174 (251)
T PRK14244 97 PFPK-SIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMD 174 (251)
T ss_pred cccC-CHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 8886 9999998875432 111123334456788999999965 457889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++. + ++|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 175 EPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999985 3 78999999986 4788899999999999999999987653
No 177
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=335.18 Aligned_cols=206 Identities=24% Similarity=0.407 Sum_probs=174.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--C--CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--G--TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~--~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ + +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 33 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 112 (268)
T PRK14248 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN 112 (268)
T ss_pred CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCc
Confidence 4579999999999999999999999999999999999753 1 478999999998742 134668999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. |+.||+.+..... ........++++.++++.+++. +..++.++.||||||||++||++|+.+|++++||
T Consensus 113 ~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD 189 (268)
T PRK14248 113 PFPK-SIYNNITHALKYA--GERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLD 189 (268)
T ss_pred cCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 8885 9999998865421 1112223345677888888884 4578899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 190 EPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 190 EPASALDPISNAKIEELITELKE--EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred CCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999964 57999999985 4688999999999999999999987764
No 178
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=5.6e-40 Score=327.49 Aligned_cols=196 Identities=30% Similarity=0.451 Sum_probs=174.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~~~~~ 113 (606)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS-VQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGF 96 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCC
Confidence 679999999999999999999999999999999999987 789999999998742 1246789999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+|+.||+.++.... ......+..+++.++++.+|+.+..++.++.||+|||||++||++|+.+|++++|||||+|||+
T Consensus 97 ~t~~~n~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~ 174 (220)
T TIGR02982 97 LTARQNVQMALELQ--PNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDS 174 (220)
T ss_pred CCHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCH
Confidence 99999999876432 1133444566789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
.++..+.+.|++++++.++|+|+++|++. +.++||++++|++|++
T Consensus 175 ~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 175 KSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999998656899999999863 5689999999999986
No 179
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-40 Score=368.93 Aligned_cols=209 Identities=24% Similarity=0.368 Sum_probs=182.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-CCeeEEEECCEeCCcc----cccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-TTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~~~~ 113 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.++ +++|+|.++|.++... ..++.++|++|++.+++.
T Consensus 17 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 17 GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 35799999999999999999999999999999999999873 3789999999987531 135679999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+||+||+.+....+.....+..+..++++++++.+++.+..++++++|||||||||+||+||+.+|++++|||||+|||+
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~ 176 (506)
T PRK13549 97 LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE 176 (506)
T ss_pred CcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 99999998875432111123334456789999999999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.++.++.+.|+++++ .|.|+|+++|++ +++.++||++++|++|++++.|+++++
T Consensus 177 ~~~~~l~~~l~~l~~-~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 177 SETAVLLDIIRDLKA-HGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999975 588999999975 578899999999999999999998765
No 180
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-40 Score=332.00 Aligned_cols=206 Identities=22% Similarity=0.422 Sum_probs=176.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.++ +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 15 ~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 35799999999999999999999999999999999999762 278999999988642 134678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ .||+||+.+...... ...+...+++++++++.+++. +..++.+++||||||||++||+||+.+|++++||
T Consensus 95 ~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllD 171 (250)
T PRK14262 95 PFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLD 171 (250)
T ss_pred cCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 888 899999998754321 112333445678889999885 3578899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.+++|++++|++|+++..|+++++.
T Consensus 172 EP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 172 EPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred CCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999864 58999999975 4688999999999999999999988764
No 181
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=331.39 Aligned_cols=206 Identities=23% Similarity=0.412 Sum_probs=175.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-C---CeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-T---TRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~---~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|..+. + .+|+|.++|.++.. ...++.++|++|++.
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14240 15 DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94 (250)
T ss_pred CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc
Confidence 35799999999999999999999999999999999998642 2 58999999998742 234678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ +||.||+.+...... .....+.++++.++++.+++. +..++++++|||||||||+||++|+.+|++++||
T Consensus 95 ~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 171 (250)
T PRK14240 95 PFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMD 171 (250)
T ss_pred cCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 888 899999998754321 112334456788888888874 4568889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|++++ + ++|+|+++|+. +++.+++|++++|++|+++..|+++++.
T Consensus 172 EP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 172 EPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999985 3 68999999975 5788999999999999999999987763
No 182
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=331.68 Aligned_cols=207 Identities=26% Similarity=0.426 Sum_probs=175.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC----CeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~----~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++. .+|+|.++|.++.. ..+++.++|++|++.
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95 (252)
T ss_pred CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence 357999999999999999999999999999999999997632 37999999988742 234678999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC----chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++.+|+.||+.+...... ...+.+..+++.++++.+++ .+..+++++.||||||||++||++|+.+|++++||
T Consensus 96 ~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 173 (252)
T PRK14272 96 PFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMD 173 (252)
T ss_pred cCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999987654221 11233334566777777765 34568889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|++++.|++++..
T Consensus 174 EP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 174 EPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999863 58999999976 4788899999999999999999988764
No 183
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=331.50 Aligned_cols=205 Identities=22% Similarity=0.409 Sum_probs=174.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc----ccccCeEEEEcCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP----QLFQTTCGYVNHRTDL 110 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~ 110 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ +.+|+|.++|.++.. ...++.++|++|++.+
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 94 (249)
T PRK14253 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP 94 (249)
T ss_pred CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCc
Confidence 35799999999999999999999999999999999999763 258999999988631 2356789999999998
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
++ .||.||+.+..... ....+...++++.++++.+++. +..++.+++|||||||||+||++|+.+|++++|||
T Consensus 95 ~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 171 (249)
T PRK14253 95 FP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDE 171 (249)
T ss_pred Cc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 88 89999998875421 1112333446677888888874 45678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|+++++
T Consensus 172 P~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 172 PTSALDPIATHKIEELMEELKK--NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred CCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999964 48999999986 578999999999999999999998765
No 184
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=333.15 Aligned_cols=206 Identities=22% Similarity=0.386 Sum_probs=177.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC-----CeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT-----TRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~-----~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
+.+|+|+|+++++||+++|+|+||||||||||+|+|+.+ + .+|+|.++|.++.. ...++.++|++|++.
T Consensus 20 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 98 (261)
T PRK14258 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN 98 (261)
T ss_pred eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-CCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc
Confidence 469999999999999999999999999999999999987 4 37999999988631 234677999999988
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ +|+.||+.+...... ..+..+..+++.++++.+++. +..++.+..||||||||++||++|+.+|++++||
T Consensus 99 l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLD 175 (261)
T PRK14258 99 LFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMD 175 (261)
T ss_pred cCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 888 899999988754221 112333446678899999874 4578889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC-----CeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL-----GDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~-----G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|++++++.++|+|+++|++ .++.++||+|++|++ |++++.|+++++.
T Consensus 176 EP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 176 EPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 999999999999999999998765689999999986 578999999999999 9999999998874
No 185
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=334.50 Aligned_cols=206 Identities=27% Similarity=0.429 Sum_probs=176.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 37 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 116 (272)
T PRK14236 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN 116 (272)
T ss_pred CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCc
Confidence 45799999999999999999999999999999999999763 378999999998742 235678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. ||.||+.+..... ....+...++++.++++.+++. +..++.++.|||||||||+||++|+.+|++++||
T Consensus 117 l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD 193 (272)
T PRK14236 117 PFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLD 193 (272)
T ss_pred cCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 8886 9999998875432 1112233345678889999885 3568889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ +.|+|+++|++ +++.++||++++|++|+++..|++++..
T Consensus 194 EPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 194 EPTSALDPISTLKIEELITELKS--KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 99999999999999999999964 58999999975 4688999999999999999999987653
No 186
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.9e-40 Score=366.23 Aligned_cols=208 Identities=20% Similarity=0.345 Sum_probs=181.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK10762 16 GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT-RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL 94 (501)
T ss_pred CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCC
Confidence 4579999999999999999999999999999999999987 7899999999987421 1346799999999999999
Q ss_pred CHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||+|++.++...... ...+..+.++++.++++.+|+.+..++++++|||||||||+||+||+.+|++|+|||||+|||+
T Consensus 95 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 174 (501)
T PRK10762 95 TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTD 174 (501)
T ss_pred cHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCH
Confidence 999999886532110 1123334456788999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.++.++.+.|+++++ .|.|+|+++|++ +++.++||++++|++|+++..|+++++
T Consensus 175 ~~~~~l~~~l~~l~~-~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 175 TETESLFRVIRELKS-QGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999975 488999999975 578899999999999999999987754
No 187
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.3e-39 Score=334.68 Aligned_cols=208 Identities=24% Similarity=0.367 Sum_probs=180.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCC--CC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRT--DL 110 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~--~~ 110 (606)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++ .+
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (268)
T PRK10419 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES-PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAV 102 (268)
T ss_pred ceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhcc
Confidence 3679999999999999999999999999999999999987 789999999987642 12467899999997 46
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
++..|+.|++.+..... ......+...+++++++.+|+. +..++.++.||||||||++||++|+.+|++++|||||+
T Consensus 103 ~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~ 180 (268)
T PRK10419 103 NPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVS 180 (268)
T ss_pred CCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 78899999997754311 1223444556789999999997 58899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|++++++.+.|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 181 ~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 181 NLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 99999999999999999876689999999975 4788899999999999999999988754
No 188
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=332.30 Aligned_cols=206 Identities=21% Similarity=0.387 Sum_probs=176.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC--C--CeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--T--TRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--~--~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+|+||||||||||+|+|+.++ + ++|+|.++|.++.. ...++.++|++|++.
T Consensus 19 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (259)
T PRK14260 19 TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN 98 (259)
T ss_pred CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccc
Confidence 35799999999999999999999999999999999998763 2 48999999988642 234668999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC----chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ +||+||+.+....+. ..++.+..+++.++++.+++ .+..++.+++|||||||||+||+||+.+|++++||
T Consensus 99 l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 175 (259)
T PRK14260 99 PFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMD 175 (259)
T ss_pred cCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 888 899999988754321 12333445667888999988 35678899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc-----CCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC-----LGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~-----~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|+ +|++++.|+++++.
T Consensus 176 EPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 176 EPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 99999999999999999999864 58999999976 57899999999998 59999999998864
No 189
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2.9e-39 Score=328.75 Aligned_cols=208 Identities=22% Similarity=0.264 Sum_probs=173.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC-CCCCeeEEEECCEeCCc---ccccC-eEEEEcCCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS-SGTTRGEIILDGTPMSP---QLFQT-TCGYVNHRTDLIPSL 114 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~-~~~~~G~I~~~G~~~~~---~~~~~-~i~yv~q~~~~~~~l 114 (606)
+.+|+|+|+++++||+++|+|+||||||||+++|+|+. ..+.+|+|.++|.++.. ...++ .++|++|++.+++.+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 99 (252)
T CHL00131 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGV 99 (252)
T ss_pred EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccc
Confidence 46999999999999999999999999999999999973 12688999999988743 12222 488999999999999
Q ss_pred CHHHHHHHHHHccCC----CCCCHHHHHHHHHHHHHHcCCc-hhhcccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 115 TVEQTLYYAAHLSIG----PQVSRYVRNARIRQVLADLALS-NVARRNIS-ELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 115 TV~e~l~f~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~-~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
|+.+++.+....... ......+..+++.++++.+++. +..++.+. +|||||||||+||+||+.+|++++|||||
T Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 179 (252)
T CHL00131 100 SNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETD 179 (252)
T ss_pred cHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 999999876432110 0112223346678899999997 46788887 59999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc-CCeEEEEcCCeEEEecChhHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF-LDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~-~D~v~vL~~G~~v~~G~~~~~ 249 (606)
+|||+.++..+.+.|+++++ .|+|+|+++|++. .+... +|++++|++|++++.|+++.+
T Consensus 180 ~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 180 SGLDIDALKIIAEGINKLMT-SENSIILITHYQR-LLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred ccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 99999999999999999875 5899999999853 55555 899999999999999998844
No 190
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=330.02 Aligned_cols=206 Identities=27% Similarity=0.422 Sum_probs=175.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+++|+|+|+++++||+++|+||||||||||+|+|+|+.++ +.+|+|.++|+++.. ...++.++|++|++.
T Consensus 16 ~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 16 NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 35799999999999999999999999999999999999752 368999999998642 134677999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ .||+||+.+...... ........+++.++++.+++. +..++.+++||||||||++||+||+.+|++++||
T Consensus 96 ~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllD 172 (251)
T PRK14251 96 PFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLD 172 (251)
T ss_pred cCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 886 799999988654221 112223345678889999984 4568889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ +.|+|+++|++ +++.+++|++++|++|+++..|+.+++.
T Consensus 173 EP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 173 EPTSALDPISSSEIEETLMELKH--QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred CCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999853 58999999976 4788999999999999999999987763
No 191
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=3.4e-40 Score=332.60 Aligned_cols=201 Identities=24% Similarity=0.402 Sum_probs=168.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++ .||
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSI 92 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chH
Confidence 569999999999999999999999999999999999987 789999999987642 235678999999988775 699
Q ss_pred HHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRN-----ARIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
.||+.+... ........ ....++++.+ ++....++++++|||||||||+||+||+.+|++++|||||+
T Consensus 93 ~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~ 167 (237)
T cd03252 93 RDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATS 167 (237)
T ss_pred HHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 999977432 11111111 1234455555 66666788899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+.++..+.+.|++++ + |+|+|+++|++. ++ +.||++++|++|++++.|+++++.+
T Consensus 168 ~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 168 ALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred cCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999986 3 789999999874 45 5699999999999999999887653
No 192
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-40 Score=365.70 Aligned_cols=208 Identities=24% Similarity=0.350 Sum_probs=180.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~~~~l 114 (606)
++.+|+|+||++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 17 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (510)
T PRK09700 17 PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL 95 (510)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC-CCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCC
Confidence 4579999999999999999999999999999999999987 7899999999987531 1345799999999999999
Q ss_pred CHHHHHHHHHHccC-CCC---CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 115 TVEQTLYYAAHLSI-GPQ---VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 115 TV~e~l~f~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
||+||+.++..... ..+ ....+..+++.++++.+|+.+..++++++|||||||||+||++|+.+|++++|||||+|
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~ 175 (510)
T PRK09700 96 TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSS 175 (510)
T ss_pred cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 99999987542110 001 12334456788999999999989999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
||+.++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|++++.|+++++
T Consensus 176 LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 176 LTNKEVDYLFLIMNQLRK-EGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchhhC
Confidence 999999999999999976 489999999974 578899999999999999999998765
No 193
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.8e-39 Score=330.50 Aligned_cols=208 Identities=21% Similarity=0.289 Sum_probs=175.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe-----CCc---c----cccCeEEEEcC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP-----MSP---Q----LFQTTCGYVNH 106 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~-----~~~---~----~~~~~i~yv~q 106 (606)
.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.+ +.. . ..++.++|++|
T Consensus 15 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q 93 (253)
T TIGR02323 15 GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA-PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ 93 (253)
T ss_pred CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEe
Confidence 3568999999999999999999999999999999999987 788999999976 431 1 12456999999
Q ss_pred CCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 107 RTD--LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 107 ~~~--~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
++. +.+.+|+.||+.+..... . .....+..+++.++++.+++. +..++.++.|||||||||+||+||+.+|++++
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vll 171 (253)
T TIGR02323 94 NPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVF 171 (253)
T ss_pred CcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 974 556789999987643211 1 011123346788999999997 47899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||||+|||+.++..+.+.|++++++.|.|+|+++|++ +++.+++|++++|++|+++..|+++++.
T Consensus 172 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 172 MDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999998766689999999975 5788899999999999999999987664
No 194
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-39 Score=333.61 Aligned_cols=208 Identities=23% Similarity=0.380 Sum_probs=177.9
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc----ccccCeEEEEcCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP----QLFQTTCGYVNHRT 108 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~ 108 (606)
++.+.+|+|+|+++++||+++|+||||||||||||+|+|+.++ +.+|+|.++|.++.. ...++.++|++|++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~ 110 (276)
T PRK14271 31 FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRP 110 (276)
T ss_pred ECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCC
Confidence 3346799999999999999999999999999999999999863 368999999988742 23567899999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN----VARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
.+++ .||+||+.+..... ...+..+..+++.++++.+++.+ ..++.++.|||||||||+||++|+.+|++++|
T Consensus 111 ~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllL 187 (276)
T PRK14271 111 NPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLL 187 (276)
T ss_pred ccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8888 89999998865421 11234444556778899999864 45788999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.+++||+++|++|+++..|+++++.
T Consensus 188 DEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 188 DEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999864 47999999975 5788999999999999999999988764
No 195
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-39 Score=328.60 Aligned_cols=205 Identities=21% Similarity=0.380 Sum_probs=174.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCC-----eeEEEECCEeCCc-----ccccCeEEEEcCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT-----RGEIILDGTPMSP-----QLFQTTCGYVNHRT 108 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~-----~G~I~~~G~~~~~-----~~~~~~i~yv~q~~ 108 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +. +|+|.++|.++.. ...++.++|++|++
T Consensus 16 ~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 94 (251)
T PRK14249 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-IVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP 94 (251)
T ss_pred CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-ccccCCcccEEEECCEEccccccChHHhhceEEEEecCC
Confidence 3569999999999999999999999999999999999987 44 6999999988642 23567899999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
.+++. ||.||+.+....+. . ..++...++++++++.+++. +..++.+..|||||||||+||++|+.+|++++|
T Consensus 95 ~~~~~-tv~enl~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllL 171 (251)
T PRK14249 95 NPFPK-SIFDNVAFGPRMLG-T-TAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILM 171 (251)
T ss_pred ccCcC-cHHHHHhhHHHhcC-C-ChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 98885 99999998764321 1 11222345677788888864 457889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||||+|||+.++..+.+.|+++. .++|+|+++|+. +++.++||++++|++|++++.|++++..
T Consensus 172 DEPt~~LD~~~~~~l~~~l~~~~--~~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 172 DEPCSALDPVSTMRIEELMQELK--QNYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred eCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999984 378999999975 5788999999999999999999988764
No 196
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-39 Score=328.72 Aligned_cols=206 Identities=22% Similarity=0.391 Sum_probs=175.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-C---CeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-T---TRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~---~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+. + .+|+|.++|.++.. ...++.++|++|++.
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 45799999999999999999999999999999999998642 2 47999999998742 234677999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. ||+||+.+....+. .....+.++++.++++.+++. +..++.++.||||||||++||++|+.+|++++||
T Consensus 98 ~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 174 (253)
T PRK14261 98 PFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMD 174 (253)
T ss_pred cCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 8885 99999998765321 112233445678888888874 3568889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.+.+|++++|++|+++..|+++++.
T Consensus 175 EP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 175 EPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 99999999999999999999864 48999999975 4688899999999999999999988763
No 197
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-39 Score=330.43 Aligned_cols=203 Identities=20% Similarity=0.361 Sum_probs=172.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTDL 110 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~~ 110 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+. +.+|+|.++|.++.. ..+++.++|++|++.+
T Consensus 23 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 102 (264)
T PRK14243 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNP 102 (264)
T ss_pred EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcc
Confidence 5699999999999999999999999999999999998642 368999999988631 2346789999999988
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
++. ||.||+.+....+ ... .+..+++.++++.+++. +..++.+++|||||||||+||+||+.+|++++|||
T Consensus 103 ~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 177 (264)
T PRK14243 103 FPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDE 177 (264)
T ss_pred ccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 884 9999998875432 111 12345567778888774 35678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc---------CCeEEEecChhHHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC---------LGDLIYAGPTRLML 250 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~---------~G~~v~~G~~~~~~ 250 (606)
||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++|||+++|+ +|+++..|+++++.
T Consensus 178 Pt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 178 PCSALDPISTLRIEELMHELKE--QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred CCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 9999999999999999999964 47999999975 57899999999998 79999999988874
No 198
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-39 Score=331.11 Aligned_cols=207 Identities=22% Similarity=0.375 Sum_probs=173.9
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--C--CCeeEEEECCEeCCc-----ccccCeEEEEcCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--G--TTRGEIILDGTPMSP-----QLFQTTCGYVNHRT 108 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~--~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~ 108 (606)
+++.+|+|+|+++++||+++|+|+||||||||||+|+|+.+ + +.+|+|.++|.++.. ..+++.++|++|++
T Consensus 35 ~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 114 (271)
T PRK14238 35 GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKP 114 (271)
T ss_pred CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCC
Confidence 34579999999999999999999999999999999999875 2 478999999988732 23467899999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC----CchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA----LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg----L~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
.+++. ||.||+.++..... ...+...++.+.++++.++ +.+..++++++||||||||++||++|+.+|+++||
T Consensus 115 ~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllL 191 (271)
T PRK14238 115 NPFPK-SIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILM 191 (271)
T ss_pred ccccc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 88874 99999998754321 1122223445677777774 44567889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 192 DEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 192 DEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999864 58999999975 4788999999999999999999987763
No 199
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.4e-39 Score=363.17 Aligned_cols=202 Identities=24% Similarity=0.376 Sum_probs=179.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---c-ccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---L-FQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~-~~~~i~yv~q~~~~~~~l 114 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... . .++.++|++|++.+++.+
T Consensus 23 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 101 (510)
T PRK15439 23 GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP-PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNL 101 (510)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCC
Confidence 3579999999999999999999999999999999999987 7899999999887431 1 235699999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.|++.+.... ..+.+++++++++.+++.+..++++++|||||||||+||++|+.+|++++|||||+|||+.
T Consensus 102 tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~ 174 (510)
T PRK15439 102 SVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPA 174 (510)
T ss_pred cHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 999999875421 1234567889999999999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++..+.+.|+++++ .|+|||+++|++ +++.++||++++|++|++++.|++++..
T Consensus 175 ~~~~l~~~l~~~~~-~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 175 ETERLFSRIRELLA-QGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 99999999999976 489999999975 5788999999999999999999987653
No 200
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2e-39 Score=329.57 Aligned_cols=200 Identities=25% Similarity=0.355 Sum_probs=175.6
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+ + +|+|.++|.++.. ...++.++|++|++.+++.+||.|
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 7999999999999999999999999999999999975 4 8999999998743 234567999999988888999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhh-------CCCEEEEeCCCCCC
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVK-------DPVLLLLDEPTVNL 191 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~-------~p~llllDEPTsgL 191 (606)
|+.+.... .....+..++++++++.+++.+..+++++.||||||||++||+||+. +|++++|||||+||
T Consensus 89 nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~L 164 (248)
T PRK03695 89 YLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSL 164 (248)
T ss_pred HHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccC
Confidence 99876321 12233345678899999999998999999999999999999999998 67999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|+.++..+.+.|+++++ .|+|+|+++|+. +++.++||++++|++|+++..|+.+++
T Consensus 165 D~~~~~~l~~~L~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 165 DVAQQAALDRLLSELCQ-QGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999975 489999999975 468899999999999999999988765
No 201
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-39 Score=333.50 Aligned_cols=205 Identities=22% Similarity=0.397 Sum_probs=175.3
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRT 108 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~ 108 (606)
+++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ +.+|+|.++|.++.. ...++.++|++|++
T Consensus 50 ~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~ 129 (285)
T PRK14254 50 GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKP 129 (285)
T ss_pred CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 345799999999999999999999999999999999999752 478999999988632 23567899999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
.+++. ||.||+.+....+ .... ...++++++++.+++. +..++++++|||||||||+||++|+.+|++++|
T Consensus 130 ~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLL 204 (285)
T PRK14254 130 NPFPK-SIYDNVAYGLKIQ---GYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILM 204 (285)
T ss_pred ccCcC-CHHHHHHHHHHHc---CCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 88885 9999998876532 1222 3456788999999984 467889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEE-EEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTA-YLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~-vL~~G~~v~~G~~~~~~ 250 (606)
||||+|||+.++..+.+.|+++++ +.|+|+++|++ +++.+++||++ +|++|+++..|++++..
T Consensus 205 DEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 205 DEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNM-QQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 999999999999999999999975 37999999975 57888999975 67999999999987753
No 202
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-39 Score=307.70 Aligned_cols=206 Identities=29% Similarity=0.419 Sum_probs=188.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+|+|+|+++.+||.++++||||||||||||+++|... |..|+|.+||++++.. -..-|.|+|++.++|++||.||
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~-P~~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~dN 94 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-PSRGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVIDN 94 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC-cccceEEECCEeccCC--CccceeEeccCccchhhHHHHH
Confidence 559999999999999999999999999999999999998 7899999999998642 3456899999999999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+.|+.+++ ++.+.+..+++.+.+..+||.+..++++-+|||||||||.|||||+.+|++|+||||+.+||..+++++
T Consensus 95 vafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~m 171 (259)
T COG4525 95 VAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM 171 (259)
T ss_pred HHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHH
Confidence 99999875 578888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC--CeEEEecChhHHHHH
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL--GDLIYAGPTRLMLEY 252 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~--G~~v~~G~~~~~~~~ 252 (606)
-++|-++++..|+.+++++|. .+++.=++++++||+. ||++..-+++-.+.|
T Consensus 172 QelLldlw~~tgk~~lliTH~-ieEAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 172 QELLLDLWQETGKQVLLITHD-IEEALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred HHHHHHHHHHhCCeEEEEecc-HHHHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 999999999999999999986 4678889999999985 799988777744444
No 203
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-39 Score=325.88 Aligned_cols=206 Identities=21% Similarity=0.399 Sum_probs=175.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--C--CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--G--TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~--~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.. + +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 15 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14266 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN 94 (250)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc
Confidence 3569999999999999999999999999999999999853 2 368999999998742 134678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. |+.||+.+..... ....+...++++.++++.+++. +..++.++.||||||||++||++|+.+|++++||
T Consensus 95 ~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 171 (250)
T PRK14266 95 PFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMD 171 (250)
T ss_pred cCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 8885 9999998765421 1122333456788899999874 4568889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ +.|+|+++|++ +++.+.+|++++|++|++++.|+++++.
T Consensus 172 EP~~gLD~~~~~~l~~~l~~~~~--~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 172 EPCSALDPISTTKIEDLIHKLKE--DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc--CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 99999999999999999999853 68999999976 5789999999999999999999988764
No 204
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-39 Score=326.26 Aligned_cols=206 Identities=25% Similarity=0.392 Sum_probs=173.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CC---CeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GT---TRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~---~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+ .+|+|.++|.++.. ...++.++|++|++.
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (252)
T PRK14255 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc
Confidence 3579999999999999999999999999999999999864 12 48999999998742 234678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ .||.||+.+....+.. ..+....+++.+.++.+++. +..++.+++|||||||||+||++|+.+|++++||
T Consensus 97 ~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 173 (252)
T PRK14255 97 PFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLD 173 (252)
T ss_pred cCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 888 6999999887543211 12222334567788888763 5568889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ +.|+|+++|++ +++.+.+|++++|++|+++..|++.+..
T Consensus 174 EPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 174 EPTSALDPISSTQIENMLLELRD--QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred CCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999964 47999999976 5788999999999999999999988764
No 205
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-39 Score=328.25 Aligned_cols=209 Identities=23% Similarity=0.395 Sum_probs=176.8
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECC------EeCC---cccccCeEEEEcC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG------TPMS---PQLFQTTCGYVNH 106 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G------~~~~---~~~~~~~i~yv~q 106 (606)
.++++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++| .++. ....++.++|++|
T Consensus 19 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~-~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q 97 (257)
T PRK14246 19 YINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-IYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQ 97 (257)
T ss_pred ecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCcCceeEcCEEEECCcccccCCHHHHhcceEEEcc
Confidence 4455689999999999999999999999999999999999987 6666655554 4432 1235678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEE
Q psy10223 107 RTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLL 182 (606)
Q Consensus 107 ~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~ll 182 (606)
++.+++.+||.||+.+...... ...+.+..+++.++++.+++. +..++.++.||||||||++||++|+.+|+++
T Consensus 98 ~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~ll 175 (257)
T PRK14246 98 QPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVL 175 (257)
T ss_pred CCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999998754321 122334556788999999996 4568899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 183 LLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 183 llDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+|||||+|||+.++..+.+.|+++++ +.|+|+++|++ +.+.++||++++|++|+++..|+.++..
T Consensus 176 llDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 176 LMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999853 58999999985 4788999999999999999999988764
No 206
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=361.16 Aligned_cols=208 Identities=17% Similarity=0.322 Sum_probs=180.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|+++.. ...++.++|++|++.+++.+
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ-KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 4679999999999999999999999999999999999987 789999999998742 12456799999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.||+.++............+..++++++++.+++.+..++++++|||||||||+||+||+.+|++++|||||+|||+.
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~ 168 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEK 168 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Confidence 99999987642110111233344567889999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
++.++.+.|+++++ .|.|+|+++|++ +++.++||++++|++|+++..|++++.
T Consensus 169 ~~~~l~~~l~~l~~-~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 169 EVNHLFTIIRKLKE-RGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999975 588999999875 578899999999999999999987664
No 207
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.2e-39 Score=324.51 Aligned_cols=198 Identities=25% Similarity=0.393 Sum_probs=168.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++. |
T Consensus 19 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~-t 96 (225)
T PRK10247 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS-PTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-T 96 (225)
T ss_pred CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCCeEEECCEEcCcCCHHHHHhccEEEecccccccc-c
Confidence 3579999999999999999999999999999999999987 789999999987642 2346789999999988874 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
|+||+.+....+. .. ...++++++++.+++. ...+++++.|||||||||+||++|+.+|++++|||||+|||+.
T Consensus 97 v~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 171 (225)
T PRK10247 97 VYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDES 171 (225)
T ss_pred HHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 9999988654321 11 1235678899999996 5789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc-CCeEEEecC
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC-LGDLIYAGP 245 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~-~G~~v~~G~ 245 (606)
++..+.+.|++++++.|.|+|+++|++. ++ +.||++++|+ ++..+.+|.
T Consensus 172 ~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 172 NKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhhh
Confidence 9999999999998766889999999864 45 5799999995 455555554
No 208
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=6.6e-40 Score=330.65 Aligned_cols=202 Identities=26% Similarity=0.417 Sum_probs=166.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++ .||
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 93 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD-PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTI 93 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC-CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhH
Confidence 469999999999999999999999999999999999987 789999999988642 234567999999988876 699
Q ss_pred HHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNA-----RIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+|++.+.... ....+..+ .+.++++.+ ++....++.++.|||||||||+||++|+.+|++++|||||+
T Consensus 94 ~e~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~ 168 (238)
T cd03249 94 AENIRYGKPD-----ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATS 168 (238)
T ss_pred HHHhhccCCC-----CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 9999875321 11111111 123333444 55556677889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEY 252 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~ 252 (606)
|||+.++.++.+.|++++ .|+|+|+++|++. ++. .||++++|++|++++.|+.+++.+.
T Consensus 169 gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 169 ALDAESEKLVQEALDRAM--KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred cCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEEEeCCHHHHhhc
Confidence 999999999999999985 4899999999864 554 8999999999999999998776543
No 209
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-39 Score=328.08 Aligned_cols=205 Identities=20% Similarity=0.369 Sum_probs=175.3
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRT 108 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~ 108 (606)
+++.+|+|+|+++++||+++|+|+||||||||+|+|+|+.++ +.+|+|.++|.++.. ..+++.++|++|++
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 446799999999999999999999999999999999999863 268999999998642 13467799999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN----VARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
.++ .+|+.||+.+....+. . ..+..++++++++.+++.+ ..++.++.||||||||++||+||+.+|++++|
T Consensus 99 ~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 173 (261)
T PRK14263 99 NPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLL 173 (261)
T ss_pred ccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 887 5999999998765321 1 2233467889999999854 34677899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc--------CCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC--------LGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~--------~G~~v~~G~~~~~~ 250 (606)
||||+|||+.++.++.+.|++++ + ++|+|+++|++ +++.++|||+++|+ +|+++..|+.+++.
T Consensus 174 DEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 174 DEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNM-QQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred eCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 99999999999999999999985 3 68999999975 46889999999996 89999999988764
No 210
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-40 Score=329.06 Aligned_cols=201 Identities=27% Similarity=0.429 Sum_probs=169.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++ .||
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD-VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 369999999999999999999999999999999999987 789999999987642 234677999999998886 699
Q ss_pred HHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRN-----ARIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+||+.+.... ....... ..+.++++.+ ++.+..++++..||||||||++||+||+.+|++++|||||+
T Consensus 93 ~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~ 167 (234)
T cd03251 93 AENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATS 167 (234)
T ss_pred HHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 9999875421 1111111 1245566666 67777788899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+.++..+.+.|++++ + +.|+|+++|++. ++.. ||++++|++|+++..|+.+++.+
T Consensus 168 ~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 168 ALDTESERLVQAALERLM-K-NRTTFVIAHRLS-TIEN-ADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred cCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HHhh-CCEEEEecCCeEeeeCCHHHHHH
Confidence 999999999999999985 3 789999999874 5654 99999999999999999887654
No 211
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-39 Score=329.75 Aligned_cols=204 Identities=21% Similarity=0.365 Sum_probs=173.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+. +.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 32 ~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~ 111 (274)
T PRK14265 32 GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111 (274)
T ss_pred CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc
Confidence 35799999999999999999999999999999999998752 258999999988632 235678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC----chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. ||.||+.+....+ ... ....+.+++.++.+++ .+..++++..|||||||||+||+||+.+|+++|||
T Consensus 112 l~~~-tv~~nl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLD 186 (274)
T PRK14265 112 PFPK-SIYENIAFAPRAN---GYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMD 186 (274)
T ss_pred cccc-cHHHHHHhHHHhc---Cch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 8875 9999998865432 111 1223456777888876 35678889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc---------CCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC---------LGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~---------~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|+ +|++++.|+++++.
T Consensus 187 EPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 187 EPCSALDPISTRQVEELCLELKE--QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 99999999999999999999863 58999999976 47889999999998 89999999998874
No 212
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-39 Score=367.68 Aligned_cols=207 Identities=23% Similarity=0.359 Sum_probs=182.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCC--CCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRT--DLI 111 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~--~~~ 111 (606)
+.+|+||||+|++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++ .++
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~ 415 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE-SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLD 415 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcC
Confidence 469999999999999999999999999999999999987 789999999998742 12466899999997 589
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
|.+||.|++.+....+. ...+.+..+++.++|+.+||. +..++++++|||||||||+||+||+.+|++|||||||+|
T Consensus 416 ~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~ 493 (623)
T PRK10261 416 PRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSA 493 (623)
T ss_pred CCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 99999999988764321 112344557789999999996 678999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||+.++.++.++|++++++.|.|+|+++|+. +.+.++||||++|++|++++.|+++++.
T Consensus 494 LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 494 LDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999876689999999975 5788999999999999999999998874
No 213
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-40 Score=312.89 Aligned_cols=210 Identities=28% Similarity=0.392 Sum_probs=181.3
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~l 114 (606)
..+.+|+++|++++||||++|+||||||||||||.|+|.+. +.+|++.+||.+++. ....+.-+.++|+..+-...
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~-p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS-PDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC-CCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 34679999999999999999999999999999999999987 789999999998864 23456678899998876668
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCC
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVK------DPVLLLLDEPT 188 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~------~p~llllDEPT 188 (606)
||+|-+.++..-... .....+..+.++++|+..++.+...+....|||||||||.+||.|++ ++++|+|||||
T Consensus 91 tv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPt 169 (259)
T COG4559 91 TVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPT 169 (259)
T ss_pred EHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCc
Confidence 999999998652211 11222445568899999999999999999999999999999999986 44589999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.||...+...+++.|+++++ |..|+++.|+ .+-...+||||++|++||++..|++++++.
T Consensus 170 saLDi~HQ~~tl~laR~la~~-g~~V~~VLHD-LNLAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 170 SALDIAHQHHTLRLARQLARE-GGAVLAVLHD-LNLAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred cccchHHHHHHHHHHHHHHhc-CCcEEEEEcc-chHHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 999999999999999999985 6888888886 467899999999999999999999998864
No 214
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=4.2e-39 Score=322.27 Aligned_cols=194 Identities=23% Similarity=0.348 Sum_probs=167.0
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lT 115 (606)
+++.+++|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+... . .+...+.+.+|
T Consensus 31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~--~-------~~~~~~~~~~t 100 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP-PDSGTVTVRGRVSSL--L-------GLGGGFNPELT 100 (224)
T ss_pred hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEchh--h-------cccccCCCCCc
Confidence 4556789999999999999999999999999999999999987 789999999987531 1 11234567899
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|+||+.+..... .....+.++++.++++.+++.+..++.+++||||||||++||++|+.+|++++|||||+|||+.+
T Consensus 101 v~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~ 177 (224)
T cd03220 101 GRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177 (224)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 999998876532 12334445678889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
+..+.+.|++++++ ++|+|+++|++ +++.+++|++++|++|+++..|
T Consensus 178 ~~~~~~~l~~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 178 QEKCQRRLRELLKQ-GKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999998764 88999999975 5788899999999999998765
No 215
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.5e-39 Score=394.09 Aligned_cols=209 Identities=24% Similarity=0.368 Sum_probs=190.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+.+|+|+|+.|++||+++|+||||||||||+|+|+|..+ +++|+|.++|.++.. ...++.+||++|++.+++.+||+
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~-ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~ 2030 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT-VTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGR 2030 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC-CCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHH
Confidence 579999999999999999999999999999999999988 789999999998743 23567899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
|++.+.++++ +.++++.+++++++++.++|.+..|+++++|||||||||+||+||+.+|+|++|||||+|||+.++.
T Consensus 2031 E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~ 2107 (2272)
T TIGR01257 2031 EHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARR 2107 (2272)
T ss_pred HHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 9999877654 2344455667889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFR 254 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~ 254 (606)
.+++.|++++++ |+|||+++|+ .+++..+||||++|.+|+++..|++++++..|.
T Consensus 2108 ~l~~lL~~l~~~-g~TIILtTH~-mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2108 MLWNTIVSIIRE-GRAVVLTSHS-MEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred HHHHHHHHHHhC-CCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 999999999764 8999999997 468999999999999999999999999988763
No 216
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-39 Score=330.74 Aligned_cols=206 Identities=23% Similarity=0.384 Sum_probs=172.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCC--CCCCHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLI--PSLTVE 117 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~--~~lTV~ 117 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.....++.++|++|++.+. ...+++
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~ 98 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-LASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVE 98 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEhHHhhccceEEEeccccccccCCCcchh
Confidence 569999999999999999999999999999999999987 78999999999875322234699999997652 235789
Q ss_pred HHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 118 QTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 118 e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+++.++...... ........+++++++++.+|+.+..+++++.||||||||++||+||+.+|++++|||||+|||+.++
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~ 178 (272)
T PRK15056 99 DVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178 (272)
T ss_pred hheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 988654211000 0111223345678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
..+.+.|+++++ .|+|+|+++|++ +++.++||+++++ +|+++..|+++++
T Consensus 179 ~~l~~~L~~~~~-~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 179 ARIISLLRELRD-EGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 999999999975 488999999975 5788999999877 8999999988765
No 217
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=4.7e-39 Score=314.94 Aligned_cols=171 Identities=36% Similarity=0.672 Sum_probs=155.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC--CCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS--SGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~--~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+++|+|+|+++++||+++|+||||||||||+|+|+|+. + +.+|+|.++|+++.....++.++|++|++.+++.+|++
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 100 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL-GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVR 100 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHH
Confidence 57999999999999999999999999999999999998 6 78999999999886544667899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.+..+.. .||||||||++||+||+.+|+++++||||+|||+.++.
T Consensus 101 ~~i~~~~~~~--------------------------------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~ 148 (194)
T cd03213 101 ETLMFAAKLR--------------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSAL 148 (194)
T ss_pred HHHHHHHHhc--------------------------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence 9997653210 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
.+.+.|+++++ .++|+|+++|++..++.++||++++|++|++++.|
T Consensus 149 ~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 149 QVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999875 48999999998765788899999999999998764
No 218
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-40 Score=306.00 Aligned_cols=210 Identities=24% Similarity=0.373 Sum_probs=187.3
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----------------ccccC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----------------QLFQT 99 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----------------~~~~~ 99 (606)
.++...+||+||+..++|+++.|+|.|||||||+||||.-+.. |..|.|.+||..+.- +.+|.
T Consensus 15 ~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~-P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs 93 (256)
T COG4598 15 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRT 93 (256)
T ss_pred hcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC-CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHH
Confidence 3445689999999999999999999999999999999987766 789999999987521 12566
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCC
Q psy10223 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDP 179 (606)
Q Consensus 100 ~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p 179 (606)
+.++|+|..++++++||.||+.-+..-- -+.++.+..++++.+|+++|+.+..+.++..|||||+||++|||||+.+|
T Consensus 94 ~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP 171 (256)
T COG4598 94 RLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEP 171 (256)
T ss_pred HhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCC
Confidence 7999999999999999999997764321 24678888899999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 180 VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 180 ~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+++++|||||+|||.-.-++++.++++|++ |+|.++++|. ...+.+...+|++|++|.+-+.|+++++.
T Consensus 172 ~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHE-M~FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 172 EVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHE-MGFARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred ceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeee-hhHHHhhhhheEEeecceecccCChHHHh
Confidence 999999999999999999999999999974 8999999885 56788899999999999999999999874
No 219
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.2e-39 Score=358.97 Aligned_cols=210 Identities=27% Similarity=0.370 Sum_probs=180.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CCCeeEEEEC-----------------------CEeCC-
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GTTRGEIILD-----------------------GTPMS- 93 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~~~G~I~~~-----------------------G~~~~- 93 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ .+.+|+|.++ |.++.
T Consensus 12 ~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 91 (520)
T TIGR03269 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEP 91 (520)
T ss_pred CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccc
Confidence 4579999999999999999999999999999999999962 3788999997 22210
Q ss_pred ---------c---ccccCeEEEEcCC-CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCC
Q psy10223 94 ---------P---QLFQTTCGYVNHR-TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE 160 (606)
Q Consensus 94 ---------~---~~~~~~i~yv~q~-~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~ 160 (606)
. ...++.++|++|+ +.+++.+||.|++.+..... ..+..+.++++.++++.+||++..++++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 168 (520)
T TIGR03269 92 EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEMVQLSHRITHIARD 168 (520)
T ss_pred cchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCccc
Confidence 0 1235679999997 67889999999999876432 233445567889999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 161 LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 161 LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||+++|++ +.+.++||++++|++|++
T Consensus 169 LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~-~~~~~~~d~i~~l~~G~i 247 (520)
T TIGR03269 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP-EVIEDLSDKAIWLENGEI 247 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999776689999999975 567889999999999999
Q ss_pred EEecChhHHHHH
Q psy10223 241 IYAGPTRLMLEY 252 (606)
Q Consensus 241 v~~G~~~~~~~~ 252 (606)
++.|++++..+.
T Consensus 248 ~~~g~~~~~~~~ 259 (520)
T TIGR03269 248 KEEGTPDEVVAV 259 (520)
T ss_pred eeecCHHHHHHH
Confidence 999998877554
No 220
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.3e-39 Score=317.90 Aligned_cols=190 Identities=24% Similarity=0.318 Sum_probs=167.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++.+|+++|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.....++.++|++|++.+++.+|+.|
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e 101 (214)
T PRK13543 23 EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH-VESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLE 101 (214)
T ss_pred CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC-CCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHH
Confidence 3569999999999999999999999999999999999987 788999999998764334557999999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+....+ ... ..++++++++.+++.+..+++++.|||||||||+||++++.+|++++|||||+|||+.++..
T Consensus 102 ~l~~~~~~~---~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (214)
T PRK13543 102 NLHFLCGLH---GRR---AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITL 175 (214)
T ss_pred HHHHHHHhc---CCc---HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 998875432 111 23456788999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
+.+.|+++++ .|+|+|+++|++ +++.++||++++|+.
T Consensus 176 l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 176 VNRMISAHLR-GGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHHh-CCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 9999999876 478999999976 579999999999863
No 221
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6e-39 Score=348.34 Aligned_cols=209 Identities=29% Similarity=0.411 Sum_probs=186.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC---CeeEEEECCEeCCc---c---c-ccCeEEEEcCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDGTPMSP---Q---L-FQTTCGYVNHRTD 109 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~---~~G~I~~~G~~~~~---~---~-~~~~i~yv~q~~~ 109 (606)
..+++||||++++||++||+|.|||||||+.++|.|+++.. .+|+|.++|.++.. + . ..+.|+|++|++.
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 47999999999999999999999999999999999998743 47999999987532 1 1 3467999999974
Q ss_pred --CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcc--cCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 --LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR--NISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 --~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+.|-+|+.+.+.-....+.. .++++.++++.++|+.+||.+.... ++++|||||||||.||+||+.+|++|++|
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaD 179 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIAD 179 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEEC
Confidence 77889999999887776532 3477888899999999999876554 99999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.++.+|+++|+++.++.|.++|+++|++ .-+.++||||+||++|++++.|+++++..
T Consensus 180 EPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 180 EPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999999999999999999975 57999999999999999999999999875
No 222
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.1e-39 Score=315.57 Aligned_cols=188 Identities=21% Similarity=0.386 Sum_probs=165.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
.+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv 91 (204)
T PRK13538 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTA 91 (204)
T ss_pred CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcH
Confidence 3579999999999999999999999999999999999987 789999999988743 2356789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
.||+.+..... .. ...++++++++.+|+.+..+++++.||||||||++||+||+++|++++|||||+|||+.++
T Consensus 92 ~e~l~~~~~~~---~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 165 (204)
T PRK13538 92 LENLRFYQRLH---GP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGV 165 (204)
T ss_pred HHHHHHHHHhc---Cc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 99998876432 11 2345688999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL 235 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL 235 (606)
..+.+.|+++++ .+.|+|+++|++ +++..+-+|++++
T Consensus 166 ~~l~~~l~~~~~-~~~tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 166 ARLEALLAQHAE-QGGMVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCh-hhhccCCceEEec
Confidence 999999999875 478999999986 4666667777776
No 223
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-39 Score=313.05 Aligned_cols=171 Identities=37% Similarity=0.672 Sum_probs=153.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.. ++.+|+|.++|.++. ...++.++|++|++.+++.+||+|
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~ 98 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVRE 98 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhceEEecccCccccCCcHHH
Confidence 579999999999999999999999999999999999853 367899999999875 345678999999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.++... + .|||||||||+||+||+.+|+++++||||+|||+.++..
T Consensus 99 ~l~~~~~~---------------~-----------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~ 146 (192)
T cd03232 99 ALRFSALL---------------R-----------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYN 146 (192)
T ss_pred HHHHHHHH---------------h-----------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHH
Confidence 99875321 0 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC-CeEEEec
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL-GDLIYAG 244 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~-G~~v~~G 244 (606)
+.+.|+++++ .|+|+|+++|++..++.+.||++++|++ |++++.|
T Consensus 147 l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 147 IVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999875 4899999999875457889999999999 9999875
No 224
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-39 Score=357.23 Aligned_cols=205 Identities=22% Similarity=0.371 Sum_probs=178.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~~l 114 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+
T Consensus 16 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK11288 16 GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ-PDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM 94 (501)
T ss_pred CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCC
Confidence 3579999999999999999999999999999999999987 789999999998742 12467899999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.||+.++............+.++++.++++.+|+.+..++++++|||||||||+||++|+.+|++++|||||+|||+.
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 174 (501)
T PRK11288 95 TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAR 174 (501)
T ss_pred CHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHH
Confidence 99999988642111111233445567889999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecCh
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~ 246 (606)
++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|+++..++.
T Consensus 175 ~~~~l~~~l~~~~~-~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 175 EIEQLFRVIRELRA-EGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999975 589999999975 578899999999999999876653
No 225
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-39 Score=324.23 Aligned_cols=201 Identities=24% Similarity=0.409 Sum_probs=165.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++. ||
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv 93 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD-PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TI 93 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HH
Confidence 469999999999999999999999999999999999987 789999999987642 2356779999999988876 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNA-----RIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
.||+.+.... .......+ .+.+.++.+ ++....++.++.|||||||||+||++|+.+|++++|||||+
T Consensus 94 ~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~ 168 (229)
T cd03254 94 MENIRLGRPN-----ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATS 168 (229)
T ss_pred HHHHhccCCC-----CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 9999875321 11111111 122334443 55555667789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+.++..+.+.|++++ + ++|+|+++|++. ++ +.||++++|++|++++.|+.++..+
T Consensus 169 ~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 169 NIDTETEKLIQEALEKLM-K-GRTSIIIAHRLS-TI-KNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred cCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HH-hhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999985 3 789999999874 45 4699999999999999998776543
No 226
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.8e-39 Score=356.54 Aligned_cols=209 Identities=23% Similarity=0.381 Sum_probs=178.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-CCeeEEEECCEeCCcc----cccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-TTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~~~~ 113 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.++ +.+|+|.++|+++... ..++.++|++|++.+++.
T Consensus 13 ~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 45799999999999999999999999999999999999863 3689999999987531 134679999999999999
Q ss_pred CCHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCchhh-cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 114 LTVEQTLYYAAHLSIGP-QVSRYVRNARIRQVLADLALSNVA-RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
+||.||+.+........ ....++..++++++++.+++.+.. ++++++|||||||||+||+||+.+|++++|||||+||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~L 172 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 99999998865422110 123334456788999999998765 5779999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|+.++..+.+.|+++++ .|+|||+++|+. +++.++||++++|++|+++..|++++.
T Consensus 173 D~~~~~~l~~~l~~l~~-~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 173 TEKETEILLDIIRDLKA-HGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 99999999999999975 589999999875 578899999999999999999887643
No 227
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6.2e-39 Score=348.27 Aligned_cols=208 Identities=27% Similarity=0.402 Sum_probs=184.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeC--Cc---ccccCeEEEEcCCC--CCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM--SP---QLFQTTCGYVNHRT--DLI 111 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~--~~---~~~~~~i~yv~q~~--~~~ 111 (606)
...+++||||++++||+++|+|+||||||||.|+|+|+.+ |.+|+|.++|.+. +. ...|+++-+++|++ .+.
T Consensus 303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~-P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLn 381 (539)
T COG1123 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP-PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLN 381 (539)
T ss_pred ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccC
Confidence 4579999999999999999999999999999999999998 6899999999773 21 22455666666665 599
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
|.+||++.+......... ....+.++++.++++.+||.. .+++++++||||||||++|||||+.+|+++++|||||.
T Consensus 382 Pr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~Sa 459 (539)
T COG1123 382 PRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSA 459 (539)
T ss_pred ccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccc
Confidence 999999999988875432 234566778999999999987 79999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||+..+.+++++|+++.++.|.|.++++|+ ..-+..+||||+||++|++|+.||++++.
T Consensus 460 LDvsvqa~VlnLl~~lq~e~g~t~lfISHD-l~vV~~i~drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 460 LDVSVQAQVLNLLKDLQEELGLTYLFISHD-LAVVRYIADRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCEEEEEeCC-HHHHHhhCceEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999986 56899999999999999999999888774
No 228
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.1e-38 Score=356.85 Aligned_cols=206 Identities=24% Similarity=0.402 Sum_probs=178.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEEC-CEe---CCc------ccccCeEEEEcCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILD-GTP---MSP------QLFQTTCGYVNHRTD 109 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~-G~~---~~~------~~~~~~i~yv~q~~~ 109 (606)
+++|+|+||++++||+++|+||||||||||||+|+|+.+ +.+|+|.++ |.+ +.. ...++.++|++|++.
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence 569999999999999999999999999999999999987 789999996 532 211 123567999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-----VARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
+++.+||.|++.+..... .++...+++++++++.+++.+ ..++++++|||||||||+||+||+.+|++|+|
T Consensus 376 l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLll 451 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVIL 451 (520)
T ss_pred cCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999998765321 233334567889999999975 57899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||+|||+.++..+.+.|++++++.|.|+|+++|++ +.+.++||++++|++|+++..|+++++.+
T Consensus 452 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 452 DEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999876689999999975 57889999999999999999999887643
No 229
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=363.29 Aligned_cols=207 Identities=21% Similarity=0.318 Sum_probs=180.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC-------------cc---ccc-CeEE
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS-------------PQ---LFQ-TTCG 102 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~-------------~~---~~~-~~i~ 102 (606)
+++|+||||++++||+++|+||||||||||||+|+|+++ +.+|+|.++|..+. .. ..| +.++
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig 107 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE-QAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMA 107 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEE
Confidence 579999999999999999999999999999999999987 78899999986431 11 122 4799
Q ss_pred EEcCCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc---hhhcccCCCCCHHHHHHHHHHHHHhh
Q psy10223 103 YVNHRT--DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS---NVARRNISELTPSEHRRVVIGTQLVK 177 (606)
Q Consensus 103 yv~q~~--~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~v~~LSgGerqRvsIa~aL~~ 177 (606)
||+|++ .++|.+||.|++.++.+... ..++.+.++++.++++.+||. +..++++++|||||||||+||+||+.
T Consensus 108 ~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~ 185 (623)
T PRK10261 108 MIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC 185 (623)
T ss_pred EEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhC
Confidence 999997 68899999999999875421 234555667889999999995 46789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+|++|||||||+|||+.++.++.++|++++++.|+|||+++|+. +.+.++||||++|++|++++.|+++++.
T Consensus 186 ~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 186 RPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 99999999999999999999999999999876689999999864 5788999999999999999999988764
No 230
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=5.3e-39 Score=320.15 Aligned_cols=190 Identities=25% Similarity=0.430 Sum_probs=162.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++ .||
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 94 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTL 94 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chH
Confidence 469999999999999999999999999999999999987 788999999987642 234568999999998887 699
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccC-----------CCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI-----------SELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v-----------~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
.|++.+... ... .+++.++++.+++.+..++.+ .+|||||||||+||++|+.+|++++||
T Consensus 95 ~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllD 165 (220)
T cd03245 95 RDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLD 165 (220)
T ss_pred HHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999876421 111 234567888888887776644 699999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++. .+ ++||++++|++|++++.|
T Consensus 166 EPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 166 EPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 99999999999999999999865 389999999864 44 799999999999998754
No 231
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.1e-38 Score=357.50 Aligned_cols=207 Identities=26% Similarity=0.424 Sum_probs=180.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---c---cccCeEEEEcCCC--CCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---Q---LFQTTCGYVNHRT--DLI 111 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~---~~~~~i~yv~q~~--~~~ 111 (606)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ .+|+|.++|.++.. . .+++.++|++|++ .++
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~ 376 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN--SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLN 376 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcC
Confidence 579999999999999999999999999999999999974 68999999987642 1 1356799999996 488
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
+.+||.|++.++...+. ...+..+.+++++++++.+++. +..++++++|||||||||+||+||+.+|++++|||||+|
T Consensus 377 ~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 455 (529)
T PRK15134 377 PRLNVLQIIEEGLRVHQ-PTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSS 455 (529)
T ss_pred CcccHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccc
Confidence 99999999988754321 1123344456788999999997 578999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||+.++..+.+.|++++++.|+|||+++|+. +++.++||++++|++|+++..|+++++.
T Consensus 456 LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 456 LDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999876689999999975 5788999999999999999999988764
No 232
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.4e-38 Score=313.23 Aligned_cols=185 Identities=24% Similarity=0.387 Sum_probs=164.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
.+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+||
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP-PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccccHHhhhheEEeccccccCCCcCH
Confidence 4579999999999999999999999999999999999987 789999999988642 2356789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.+.... . ..++++++++.+++.+..+++++.||||||||++||++|+.+|++++|||||+|||+.++
T Consensus 91 ~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~ 161 (201)
T cd03231 91 LENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGV 161 (201)
T ss_pred HHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 9999875321 1 235678899999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL 235 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL 235 (606)
.++.+.|+++.+ .|+|+|+++|++. ++.+.+|+++++
T Consensus 162 ~~l~~~l~~~~~-~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 162 ARFAEAMAGHCA-RGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecCch-hhhhccceeEec
Confidence 999999999875 4889999999875 678899999887
No 233
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.1e-38 Score=310.89 Aligned_cols=178 Identities=26% Similarity=0.418 Sum_probs=154.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----ccccCeEEEEcCCCC-CCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD-LIP 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~-~~~ 112 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.. ...++.++|++|++. .+.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR-PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 3569999999999999999999999999999999999987 789999999988741 124567999999973 333
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
..||+||+.+..... ..+..+..+++.++++.+++.+..++++++|||||||||+||+||+.+|++++|||||+|||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 159 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 579999999875422 23344455678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
+.++..+.+.|+++++ .|+|+|+++|++
T Consensus 160 ~~~~~~~~~~l~~~~~-~~~tili~sH~~ 187 (190)
T TIGR01166 160 PAGREQMLAILRRLRA-EGMTVVISTHDV 187 (190)
T ss_pred HHHHHHHHHHHHHHHH-cCCEEEEEeecc
Confidence 9999999999999975 488999999975
No 234
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-39 Score=322.67 Aligned_cols=196 Identities=28% Similarity=0.413 Sum_probs=178.7
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++++..+.--++||-|+||||||||+|+|+|+.+ |++|.|.+||..+.+ ...++++|||+||..+||++||+
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r-PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR-PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC-ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 7888887757999999999999999999999998 899999999987632 12578999999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
.||.|+.... .....+++.+.+|++|..++++..|||||||||+|+|||+++|++|+||||.+.||...+.
T Consensus 95 gNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~ 165 (352)
T COG4148 95 GNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKR 165 (352)
T ss_pred cchhhhhccc---------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhh
Confidence 9999987521 2345788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+++-.|.+++++.+.-|+.++|. .+|+.+++|+|++|++|++..+|+.+++.+
T Consensus 166 EilpylERL~~e~~IPIlYVSHS-~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 166 EILPYLERLRDEINIPILYVSHS-LDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred HHHHHHHHHHHhcCCCEEEEecC-HHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 99999999999989999999986 579999999999999999999999998864
No 235
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-39 Score=322.93 Aligned_cols=200 Identities=24% Similarity=0.390 Sum_probs=165.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .||
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 91 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD-VSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTI 91 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chH
Confidence 469999999999999999999999999999999999987 789999999988642 235667999999998886 699
Q ss_pred HHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNA-----RIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
.||+.+... ........+ .+.+.++.+ ++....++.++.|||||||||+||++|+.+|++++|||||+
T Consensus 92 ~~nl~~~~~-----~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~ 166 (236)
T cd03253 92 GYNIRYGRP-----DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATS 166 (236)
T ss_pred HHHHhhcCC-----CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999987532 112111111 123334444 55555677789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|+++++ |+|+|+++|++. .+. .||++++|++|+++..|+.++..
T Consensus 167 ~LD~~~~~~l~~~l~~~~~--~~tiii~sh~~~-~~~-~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 167 ALDTHTEREIQAALRDVSK--GRTTIVIAHRLS-TIV-NADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH-HHH-hCCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999864 789999999864 554 59999999999999999877654
No 236
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.3e-38 Score=354.98 Aligned_cols=208 Identities=25% Similarity=0.335 Sum_probs=179.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCcc------ccc-CeEEEEcCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSPQ------LFQ-TTCGYVNHRT 108 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~~------~~~-~~i~yv~q~~ 108 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|..++ +++|+|.++|.++... ..+ +.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 5799999999999999999999999999999999999873 2689999999987421 122 5799999997
Q ss_pred C--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch---hhcccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 109 D--LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN---VARRNISELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 109 ~--~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
. +++.+||+|++.+..... ...++.+..++++++++.+||.+ ..++++++|||||||||+||+||+.+|++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~lll 179 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLI 179 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence 4 678899999988654321 12344455678899999999975 4689999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||||+|||+.++.++.+.|++++++.|.|+|+++|++ +.+.++||||++|++|++++.|+++++.
T Consensus 180 lDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 180 ADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred EcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999876689999999975 5788899999999999999999987764
No 237
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.8e-38 Score=322.98 Aligned_cols=191 Identities=26% Similarity=0.414 Sum_probs=166.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCC--CH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSL--TV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~l--TV 116 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++| +..++|++|++.+++.+ |+
T Consensus 16 ~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~~--------~~~i~~v~q~~~~~~~l~~~~ 86 (251)
T PRK09544 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA-PDEGVIKRNG--------KLRIGYVPQKLYLDTTLPLTV 86 (251)
T ss_pred CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECC--------ccCEEEeccccccccccChhH
Confidence 3569999999999999999999999999999999999987 7899999986 23699999998877764 77
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
.+++.+.. ... .+++.++++.+++.+..+++++.|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 87 ~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 156 (251)
T PRK09544 87 NRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQ 156 (251)
T ss_pred HHHHhccc------ccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 77664311 111 24578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
..+.+.|++++++.|+|+|+++|++ +++.+.||++++|+ |+++..|+++++.
T Consensus 157 ~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 157 VALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 9999999999765588999999975 57889999999996 4799999987753
No 238
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=4.9e-38 Score=318.82 Aligned_cols=210 Identities=23% Similarity=0.296 Sum_probs=171.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CCCeeEEEECCEeCCc---cc-ccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GTTRGEIILDGTPMSP---QL-FQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~~~G~I~~~G~~~~~---~~-~~~~i~yv~q~~~~~~~ 113 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ .+.+|+|.++|.++.. .. .++.++|++|++.+++.
T Consensus 13 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (248)
T PRK09580 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92 (248)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccc
Confidence 3569999999999999999999999999999999999952 3788999999987642 11 23569999999999998
Q ss_pred CCHHHHHHHHHH-ccCCC---CCCHHHHHHHHHHHHHHcCCc-hhhcccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 114 LTVEQTLYYAAH-LSIGP---QVSRYVRNARIRQVLADLALS-NVARRNIS-ELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 114 lTV~e~l~f~~~-~~~~~---~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~-~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
+|+.+++.+... ..... ........++++++++.+++. +..++.+. .|||||||||+||+||+.+|++++||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEP 172 (248)
T PRK09580 93 VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 172 (248)
T ss_pred hhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 888777654321 11000 011223345678889999995 56677775 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc-CCeEEEEcCCeEEEecChhHHH
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF-LDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~-~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+|||+.++..+.+.|+++++ .++|+|+++|++. .+... +|++++|++|++++.|+.+.+.
T Consensus 173 t~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 234 (248)
T PRK09580 173 DSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLVK 234 (248)
T ss_pred CccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999875 4789999999864 55555 8999999999999999988653
No 239
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-38 Score=328.93 Aligned_cols=209 Identities=22% Similarity=0.366 Sum_probs=174.8
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRT 108 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~ 108 (606)
+.+.+|+|+|+++++||+++|+|||||||||||++|+|+.++ +.+|+|.++|.++.. ...++.++|++|++
T Consensus 56 ~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 135 (305)
T PRK14264 56 GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSP 135 (305)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCC
Confidence 346799999999999999999999999999999999999752 478999999988642 13467899999999
Q ss_pred CCCCCCCHHHHHHHHHHccCC---------CCCC-HHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHH
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIG---------PQVS-RYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQ 174 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~---------~~~~-~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~a 174 (606)
.+++ .||+||+.+....... .... .....+++.++++.+++. +..++.+++|||||||||+||+|
T Consensus 136 ~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAra 214 (305)
T PRK14264 136 NPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARC 214 (305)
T ss_pred cccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHH
Confidence 8887 4999999987542100 0011 122346688899999874 45688899999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeE-EEEcCCeEEEecChhHHH
Q psy10223 175 LVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRT-AYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 175 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v-~vL~~G~~v~~G~~~~~~ 250 (606)
|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++ +.+.++||++ ++|++|+++..|+++++.
T Consensus 215 L~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~~i~~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 215 LAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNM-QQAARISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCH-HHHHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999975 37999999976 4688999997 578999999999987764
No 240
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-38 Score=331.63 Aligned_cols=205 Identities=22% Similarity=0.377 Sum_probs=175.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+++|+|+|++|++||+++|+|||||||||||++|+|..+. +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 94 ~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~ 173 (329)
T PRK14257 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173 (329)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 35699999999999999999999999999999999998752 468999999999852 235778999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCH-HHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSR-YVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
+++ .|++||+.|+.... .... +...+.++++++.++|. ...++++..|||||||||+|||||+.+|+|++|
T Consensus 174 ~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLL 249 (329)
T PRK14257 174 PFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLM 249 (329)
T ss_pred cCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 885 79999999875421 1222 22334567888888773 456788999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||||+|||+.+...+.+.|+++.+ ++|+|+++|++ +.+.++||||++|++|+++..|+++++.
T Consensus 250 DEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 250 DEPTSALDPIATAKIEELILELKK--KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999864 58999999985 5788899999999999999999999875
No 241
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2e-38 Score=388.46 Aligned_cols=208 Identities=21% Similarity=0.375 Sum_probs=189.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|.++.. ...|+.+||++|++.+++.+||
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~-PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV 1020 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP-PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTV 1020 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC-CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCH
Confidence 4679999999999999999999999999999999999988 789999999998753 2357789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+|++.+.++++ +.+.++.+++++++++.+||.+..++++++|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 1021 ~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr 1097 (2272)
T TIGR01257 1021 AEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSR 1097 (2272)
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHH
Confidence 99999987754 233445567789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYF 253 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f 253 (606)
..++++|++++ .|+|||+++|+. +++..++|||++|++|+++..|++.++++.|
T Consensus 1098 ~~l~~lL~~l~--~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1098 RSIWDLLLKYR--SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHHHHHHHHHh--CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 99999999984 389999999975 5788999999999999999999999998765
No 242
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-38 Score=355.39 Aligned_cols=209 Identities=22% Similarity=0.361 Sum_probs=178.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCC---CCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRT---DLI 111 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~---~~~ 111 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+++.+|+|.++|+++.. ...++.++|++|++ .++
T Consensus 274 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 35699999999999999999999999999999999999863478999999988642 12356799999995 478
Q ss_pred CCCCHHHHHHHHHHccCCC--CCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGP--QVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
+.+||.||+.+........ ...+.+.+++++++++.+++. +..+++++.|||||||||+||+||+.+|++|+|||||
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt 433 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPT 433 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 8999999998764211100 112334456789999999996 5789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
+|||+.++.++.++|+++++ .|+|||+++|+. +++.++||++++|++|+++..|+++++
T Consensus 434 ~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 434 RGIDVGAKYEIYKLINQLVQ-QGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred CCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999986 489999999975 578999999999999999999887654
No 243
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-38 Score=321.72 Aligned_cols=205 Identities=27% Similarity=0.426 Sum_probs=173.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCC---c----ccccCeEEEEcCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMS---P----QLFQTTCGYVNHR 107 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~---~----~~~~~~i~yv~q~ 107 (606)
++.+|+|+|+++++||+++|+|+||||||||||+|+|+.++ +.+|+|.++|.++. . ...++.++|++|+
T Consensus 28 ~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 107 (265)
T PRK14252 28 GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQK 107 (265)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccC
Confidence 45799999999999999999999999999999999999762 16899999997653 1 2346789999999
Q ss_pred CCCCCCCCHHHHHHHHHHccCCCCCC-HHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEE
Q psy10223 108 TDLIPSLTVEQTLYYAAHLSIGPQVS-RYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLL 182 (606)
Q Consensus 108 ~~~~~~lTV~e~l~f~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~ll 182 (606)
+.+++. ||.||+.+..... ... +...++++.++++.+++. +..++.+..|||||||||+||++|+.+|+++
T Consensus 108 ~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 183 (265)
T PRK14252 108 PNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEIL 183 (265)
T ss_pred CcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 998986 9999998875422 122 222345677888888763 4567889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 183 LLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 183 llDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+|||||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|+.++..
T Consensus 184 llDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 184 LFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNM-QQAARVSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999864 58999998875 5788999999999999999999987763
No 244
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-38 Score=303.72 Aligned_cols=159 Identities=32% Similarity=0.499 Sum_probs=145.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|+.
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVR 91 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHH
Confidence 469999999999999999999999999999999999987 789999999988753 23567899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+. ||||||||++||+||+.+|+++++||||+|||+.++.
T Consensus 92 ~~~~---------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~ 132 (173)
T cd03230 92 ENLK---------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRR 132 (173)
T ss_pred HHhh---------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 9873 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
.+.+.|++++++ |.|+|+++|++ +++.+.+|++++|++|++
T Consensus 133 ~l~~~l~~~~~~-g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 133 EFWELLRELKKE-GKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHHHHC-CCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 999999999875 88999999976 478889999999999974
No 245
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.2e-38 Score=361.72 Aligned_cols=198 Identities=19% Similarity=0.332 Sum_probs=166.9
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~l 114 (606)
+++++|+|+|++++|||.+||+||||||||||+++|+|.. |.+|+|.+||.++.+ +.+|+.++||+|++.+|+.
T Consensus 361 ~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~--p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~- 437 (588)
T PRK11174 361 DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL--PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG- 437 (588)
T ss_pred CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-
Confidence 3467999999999999999999999999999999999998 468999999998753 4578899999999999976
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-----------chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL-----------SNVARRNISELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-----------~~~~~~~v~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
|++||+.++.. +.+++ ++.++++..++ +....+....||||||||++|||||+++|++++
T Consensus 438 TI~eNI~~g~~-----~~~~e----ei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~Ili 508 (588)
T PRK11174 438 TLRDNVLLGNP-----DASDE----QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLL 508 (588)
T ss_pred CHHHHhhcCCC-----CCCHH----HHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999988631 23332 34444444443 332333345799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||||+||+.+...+.+.|+++. .++|+|+++|++ +..+.+|+|++|++|+++..|+.+++.+
T Consensus 509 LDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 509 LDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 999999999999999999999885 478999999987 4567899999999999999999888764
No 246
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.7e-38 Score=316.20 Aligned_cols=197 Identities=27% Similarity=0.420 Sum_probs=167.4
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCC--CCCCHHHHHHHHHH
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLI--PSLTVEQTLYYAAH 125 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~--~~lTV~e~l~f~~~ 125 (606)
+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++. ..++.++|++|++.++ ..+|+.||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP-PAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4689999999999999999999999999987 78999999998764 2456799999998764 34899999987532
Q ss_pred ccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy10223 126 LSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204 (606)
Q Consensus 126 ~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~ 204 (606)
.... .........+++.++++.+++++..++++++|||||||||+||++|+.+|+++++||||+|||+.++..+.+.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1100 001122334568899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 205 SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 205 ~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++++ .|+|+|+++|++ +++.++||+++++ +|++++.|+.++..
T Consensus 158 ~~~~-~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 158 ELAG-AGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9875 489999999986 4788999999999 89999999987763
No 247
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-39 Score=306.75 Aligned_cols=216 Identities=22% Similarity=0.364 Sum_probs=194.1
Q ss_pred eeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC
Q psy10223 33 VFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD 109 (606)
Q Consensus 33 ~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~ 109 (606)
+.+.++++.+|+|+|+++++|.+++++|||||||||||.+++.+.+ .++|+|+++|.++.. +.+.+.++.+-|+..
T Consensus 7 v~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~-~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~ 85 (252)
T COG4604 7 VSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK-KDSGEITIDGLELTSTPSKELAKKLSILKQENH 85 (252)
T ss_pred hhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc-ccCceEEEeeeecccCChHHHHHHHHHHHhhch
Confidence 3446677899999999999999999999999999999999999887 789999999999854 346677888899999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
.-..+||+|-+.|+..-. ..+...++.+..++++++.++|++..|++..+||||||||.-||..++++.+.++||||.+
T Consensus 86 i~~rlTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLN 164 (252)
T COG4604 86 INSRLTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLN 164 (252)
T ss_pred hhheeEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCccc
Confidence 999999999999974321 2233445677889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+||-..+.++++.||+++++.|+||+++.|+. ..+..++|+++-|++|+++..|+++++.+
T Consensus 165 NLDmkHsv~iMk~Lrrla~el~KtiviVlHDI-NfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 165 NLDMKHSVQIMKILRRLADELGKTIVVVLHDI-NFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred ccchHHHHHHHHHHHHHHHHhCCeEEEEEecc-cHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 99999999999999999999999999999974 57888999999999999999999998864
No 248
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=3.6e-38 Score=332.32 Aligned_cols=189 Identities=24% Similarity=0.383 Sum_probs=168.9
Q ss_pred EEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q psy10223 58 VLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYV 136 (606)
Q Consensus 58 IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~ 136 (606)
|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.++|++||.||+.|+.+.+ ..++.+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~-p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ-PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHHH
Confidence 689999999999999999987 789999999998753 223567999999999999999999999986532 234444
Q ss_pred HHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q psy10223 137 RNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216 (606)
Q Consensus 137 ~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~ 216 (606)
.+++++++++.++|.+..++++++|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.++.|+|+|+
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiii 156 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF 156 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 56678999999999999999999999999999999999999999999999999999999999999999998767899999
Q ss_pred EecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 217 t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
++|++ +++.++|||+++|++|+++..|+++++.+
T Consensus 157 vTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 157 VTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred EeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99975 57899999999999999999999988753
No 249
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-37 Score=318.03 Aligned_cols=198 Identities=19% Similarity=0.264 Sum_probs=173.1
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
..+++|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|. ++++.|+..+.+.+|+.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~-p~~G~I~~~g~----------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS-PTVGKVDRNGE----------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCE----------EeEEecccCCCCCCcHH
Confidence 45689999999999999999999999999999999999987 78899999985 34566666677889999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.+..... ....++..+.+.++++.+++.+..++.++.|||||||||+||+||+.+|++++|||||+|||+.++.
T Consensus 104 enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~ 180 (264)
T PRK13546 104 ENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQ 180 (264)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHH
Confidence 9998765432 2234444556778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.+.+.|+++++ .|+|+|+++|+. .++.+++|++++|++|+++..|+.+++.+
T Consensus 181 ~l~~~L~~~~~-~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 181 KCLDKIYEFKE-QNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred HHHHHHHHHHH-CCCEEEEEcCCH-HHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999865 588999999975 47888999999999999999999887754
No 250
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-37 Score=337.53 Aligned_cols=198 Identities=17% Similarity=0.290 Sum_probs=171.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+|+|+||++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.+. .++ +...+.+.+||+|+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~-P~sGeI~I~G~~~-------~i~---~~~~l~~~lTV~En 105 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM-PNKGTVDIKGSAA-------LIA---ISSGLNGQLTGIEN 105 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC-CCceEEEECCEee-------eEE---eccccCCCCcHHHH
Confidence 579999999999999999999999999999999999987 7899999999752 112 23456678999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+.+..... ..+..+..+++.++++.+++.+..+++++.|||||||||+||+||+.+|++++|||||+|||+.++..+
T Consensus 106 L~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~L 182 (549)
T PRK13545 106 IELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKC 182 (549)
T ss_pred HHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 98755321 233444556678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHH
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYF 253 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f 253 (606)
.+.|+++++ .|+|+|+++|++ +++.++||++++|++|+++..|+++++..-+
T Consensus 183 lelL~el~~-~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 183 LDKMNEFKE-QGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 999999865 588999999975 5788999999999999999999998876543
No 251
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=6.1e-38 Score=308.52 Aligned_cols=179 Identities=25% Similarity=0.328 Sum_probs=153.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CCCeeEEEECCEeCCcc---c-ccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GTTRGEIILDGTPMSPQ---L-FQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~~~G~I~~~G~~~~~~---~-~~~~i~yv~q~~~~~~~ 113 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ .+.+|+|.++|.++... . .+..++|++|++.+++.
T Consensus 12 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (200)
T cd03217 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPG 91 (200)
T ss_pred CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccC
Confidence 4579999999999999999999999999999999999841 27889999999987531 1 24569999999988998
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+|+++++ ++..+.||||||||++||++|+.+|++++|||||+|||+
T Consensus 92 ~~~~~~l----------------------------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 137 (200)
T cd03217 92 VKNADFL----------------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI 137 (200)
T ss_pred ccHHHHH----------------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 8888766 112358999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHh-cCCeEEEEcCCeEEEecChhHHHHHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLP-FLDRTAYLCLGDLIYAGPTRLMLEYFR 254 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~-~~D~v~vL~~G~~v~~G~~~~~~~~f~ 254 (606)
.++..+.+.|+++++ .++|+|+++|++. .+.+ ++|++++|++|+++..|+.+ +.+.+.
T Consensus 138 ~~~~~l~~~L~~~~~-~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~~-~~~~~~ 196 (200)
T cd03217 138 DALRLVAEVINKLRE-EGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDKE-LALEIE 196 (200)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccHH-HHhhhc
Confidence 999999999999875 4889999999864 5666 79999999999999999544 555443
No 252
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=7.9e-38 Score=307.04 Aligned_cols=184 Identities=24% Similarity=0.378 Sum_probs=159.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+||
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSA 90 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccchHHhhhheEEeccCcccccCCcH
Confidence 4679999999999999999999999999999999999987 789999999987643 2345689999999889999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
.|++.+...... . .++++.++++.+++.+..+++++.|||||||||+||++++.+|++++|||||+|||+.++
T Consensus 91 ~~~l~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 163 (198)
T TIGR01189 91 LENLHFWAAIHG----G---AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGV 163 (198)
T ss_pred HHHHHHHHHHcC----C---cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 999988654321 1 134578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEE
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAY 234 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~v 234 (606)
..+.+.|+++++ .|.|+|+++|++.+ -.+++++.
T Consensus 164 ~~l~~~l~~~~~-~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 164 ALLAGLLRAHLA-RGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHHHHHHHHh-CCCEEEEEEccccc---ccceEEee
Confidence 999999999875 48899999998742 23566654
No 253
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-38 Score=338.72 Aligned_cols=206 Identities=27% Similarity=0.428 Sum_probs=185.4
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~~ 113 (606)
+..++|+||||++++||+++|+|.||||||||+|+|+|.++ +++|+|.++|++... +..+..|..|.|+..+.|+
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~-p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~ 97 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP-PDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPN 97 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc-CCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCC
Confidence 34589999999999999999999999999999999999998 899999999998752 2345679999999999999
Q ss_pred CCHHHHHHHHHHccC-CCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 114 LTVEQTLYYAAHLSI-GPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 114 lTV~e~l~f~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
|||.||+.++-..+. ...+.++..+++++++|+.+++....++++++||+||||-|.||+||..+++|++|||||+.|+
T Consensus 98 LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt 177 (500)
T COG1129 98 LSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALT 177 (500)
T ss_pred ccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 999999988765433 2336677788899999999999655899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecCh
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~ 246 (606)
...+..+.+.++++.+ .|.++|.++|. .++++++|||+.||.||+.+..++.
T Consensus 178 ~~E~~~Lf~~ir~Lk~-~Gv~ii~ISHr-l~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 178 VKETERLFDLIRRLKA-QGVAIIYISHR-LDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEcCc-HHHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999999999975 69999999985 6799999999999999999998883
No 254
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=9.2e-39 Score=319.85 Aligned_cols=195 Identities=25% Similarity=0.430 Sum_probs=161.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++ .||
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv 104 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ-PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSL 104 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhH
Confidence 469999999999999999999999999999999999987 789999999987642 234567999999988876 599
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
+||+.++..........+......++++++.+ |+.+..+++++.|||||||||+||++|+.+|++++|||||+|||+.
T Consensus 105 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~ 184 (226)
T cd03248 105 QDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184 (226)
T ss_pred HHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 99998754311000000111112356788888 8888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
++..+.+.|+++++ ++|+|+++|++. ++. .||++++|++|++
T Consensus 185 ~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 185 SEQQVQQALYDWPE--RRTVLVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHHHHcC--CCEEEEEECCHH-HHH-hCCEEEEecCCcC
Confidence 99999999999864 589999999864 554 5999999999974
No 255
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.2e-38 Score=309.18 Aligned_cols=187 Identities=26% Similarity=0.412 Sum_probs=162.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++.....++.++|++|++.+++.+||+|
T Consensus 14 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 92 (207)
T PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAE 92 (207)
T ss_pred CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHH
Confidence 3579999999999999999999999999999999999987 788999999987642225678999999988889999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+..... ... .+++.++++.+|+.+..+++++.||||||||++||++|+.+|++++|||||+|||+.++.+
T Consensus 93 ~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 165 (207)
T PRK13539 93 NLEFWAAFL---GGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVAL 165 (207)
T ss_pred HHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 998765432 111 2357889999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
+.+.|+++++ .|+|+|+++|++ +++.. |+++.+..
T Consensus 166 l~~~l~~~~~-~~~tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 166 FAELIRAHLA-QGGIVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred HHHHHHHHHH-CCCEEEEEeCCc-hhhcc--CcEEeecC
Confidence 9999999876 489999999986 35554 88877743
No 256
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-38 Score=352.35 Aligned_cols=203 Identities=24% Similarity=0.393 Sum_probs=174.4
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCC---CCCCCC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHR---TDLIPS 113 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~---~~~~~~ 113 (606)
.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++.. ...++.++|++|+ ..+++.
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK-RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 48999999999999999999999999999999999987 789999999988642 1245679999998 468899
Q ss_pred CCHHHHHHHHHHcc---CCC--C-CCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 114 LTVEQTLYYAAHLS---IGP--Q-VSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 114 lTV~e~l~f~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
+||.|++.+....+ ... . ......+++++++++.+++. +..++++++|||||||||+||++|+.+|++|+|||
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE 435 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE 435 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC
Confidence 99999998754211 000 0 12223345678999999997 78899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecCh
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~ 246 (606)
||+|||+.++..+.+.|+++++ .|.|+|+++|++ +++.++||++++|++|+++..++.
T Consensus 436 Pt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 436 PTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSEL-PEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred CCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999976 489999999975 578899999999999999988765
No 257
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-38 Score=304.01 Aligned_cols=162 Identities=31% Similarity=0.521 Sum_probs=146.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----ccccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~~~~~ 113 (606)
++++|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 12 ~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE-PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 3579999999999999999999999999999999999987 789999999988642 2356789999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+|++|++.+. ||||||||++||+||+.+|++++|||||+|||+
T Consensus 91 ~t~~~~l~~~-------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~ 133 (178)
T cd03229 91 LTVLENIALG-------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDP 133 (178)
T ss_pred CCHHHheeec-------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCH
Confidence 9999987542 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
.++..+.+.|++++++.++|+|+++|++ +++.+.+|++++|++|+
T Consensus 134 ~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 134 ITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 9999999999999875578999999975 46778999999999985
No 258
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.2e-38 Score=350.72 Aligned_cols=206 Identities=22% Similarity=0.361 Sum_probs=176.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCC---CCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRT---DLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~---~~~~ 112 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|..+++.+|+|.++|+++.. ...++.++|++|+. .+++
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~ 352 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVP 352 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCC
Confidence 4699999999999999999999999999999999999873478999999988742 22466899999995 5899
Q ss_pred CCCHHHHHHHHHHccCC--CCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIG--PQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
.+||+|++.+....... ........+++++++++.+++.+ ..+++++.|||||||||+||++|+.+|++|+|||||+
T Consensus 353 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~ 432 (500)
T TIGR02633 353 ILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTR 432 (500)
T ss_pred CCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 99999999875421110 01223334567889999999974 6899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChh
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~ 247 (606)
|||+.++..+.+.|++++++ |.|+|+++|++ +++.++||++++|++|+++..++.+
T Consensus 433 ~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 433 GVDVGAKYEIYKLINQLAQE-GVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred CcCHhHHHHHHHHHHHHHhC-CCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999764 89999999975 5789999999999999999877654
No 259
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.5e-38 Score=324.51 Aligned_cols=195 Identities=23% Similarity=0.380 Sum_probs=170.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
..+|+|+|++|++||+++|+|||||||||||++|+|+.+ .+|+|.++|.++.. ..+|+.++|++|++.+++. ||
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv 93 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TF 93 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hH
Confidence 469999999999999999999999999999999999986 57999999998743 3467789999999999985 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCC-----------CCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE-----------LTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~-----------LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.... ... .+++.++++.+||.+..++++.+ ||||||||++|||||+.+|+|++||
T Consensus 94 ~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlD 163 (275)
T cd03289 94 RKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 163 (275)
T ss_pred HHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99996321 112 23567788899999888888877 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.+...+.+.|+++. .++|+|+++|++ +.+. .||||++|++|++++.|+++++..
T Consensus 164 Epts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 164 EPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred CccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence 9999999999999999999874 479999999986 4554 599999999999999999998865
No 260
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.7e-38 Score=313.55 Aligned_cols=190 Identities=24% Similarity=0.366 Sum_probs=160.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .||
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv 94 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-LSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTI 94 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-chH
Confidence 469999999999999999999999999999999999987 789999999988642 235678999999998776 599
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------cccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-----------RRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.+... ... +++.+.++.+++.+.. ++.+..||||||||++||++|+.+|++++||
T Consensus 95 ~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD 164 (221)
T cd03244 95 RSNLDPFGE------YSD----EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLD 164 (221)
T ss_pred HHHhCcCCC------CCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999864311 121 2345556666655433 5688999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecC
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGP 245 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~ 245 (606)
|||+|||+.++..+.+.|+++.+ +.|+|+++|++. ++. .||++++|++|++++.|+
T Consensus 165 EP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 165 EATASVDPETDALIQKTIREAFK--DCTVLTIAHRLD-TII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HHh-hCCEEEEEECCeEEecCC
Confidence 99999999999999999999853 589999999864 454 599999999999998876
No 261
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.2e-37 Score=311.35 Aligned_cols=191 Identities=26% Similarity=0.388 Sum_probs=163.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEEC--CE--eCCc---c---cc-cCeEEEEcCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILD--GT--PMSP---Q---LF-QTTCGYVNHRT 108 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~--G~--~~~~---~---~~-~~~i~yv~q~~ 108 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++ |. ++.. . .. ++.++|++|++
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 99 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL-PDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFL 99 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccc
Confidence 479999999999999999999999999999999999987 788999998 42 3321 1 12 35799999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
.+++.+||.|++.+..... ........+++.++++.+++.+ ..++++++||||||||++||+||+.+|++++||||
T Consensus 100 ~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 176 (224)
T TIGR02324 100 RVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEP 176 (224)
T ss_pred ccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999999998865421 2333344567889999999986 45889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~ 236 (606)
|+|||+.++..+.+.|+++++ .|+|+|+++|+ .+.+.++||+++.+.
T Consensus 177 t~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~-~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 177 TASLDAANRQVVVELIAEAKA-RGAALIGIFHD-EEVRELVADRVMDVT 223 (224)
T ss_pred cccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC-HHHHHHhcceeEecC
Confidence 999999999999999999975 48999999998 456778999998763
No 262
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.4e-38 Score=361.71 Aligned_cols=198 Identities=25% Similarity=0.426 Sum_probs=169.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
..+|+|+|++|+|||.+||+|+||||||||+|+|+|++. |.+|+|++||.+++. ..+|+++|||+|++.+|.. |+
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~-p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI 563 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK-PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SI 563 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cH
Confidence 369999999999999999999999999999999999998 789999999999754 4689999999999998876 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-----------CchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA-----------LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-----------L~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++.. ..+. +++.++++..| .+........+||||||||++|||||+++|+||+||
T Consensus 564 ~eNi~l~~p-----~~~~----e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLD 634 (709)
T COG2274 564 RENIALGNP-----EATD----EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLD 634 (709)
T ss_pred HHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 999988642 2232 22333333333 333333445689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEY 252 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~ 252 (606)
||||+||+.+...+.+.|+++. .|+|+|+++|.+ ...+.|||++||++|+++.+|+.+++++.
T Consensus 635 EaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl--~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 635 EATSALDPETEAIILQNLLQIL--QGRTVIIIAHRL--STIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred CcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccc--hHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 9999999999999999999985 479999999976 57899999999999999999999998863
No 263
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5.7e-38 Score=349.63 Aligned_cols=206 Identities=20% Similarity=0.317 Sum_probs=177.2
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCC---CCCCC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRT---DLIPS 113 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~---~~~~~ 113 (606)
.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++.. ...++.++|++|++ .+++.
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~-p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 46999999999999999999999999999999999987 788999999988742 12456799999996 57899
Q ss_pred CCHHHHHHHHHHccCC---CCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 114 LTVEQTLYYAAHLSIG---PQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+||.|++.+....... ......+.+++++++++.+++. +..+++++.|||||||||+||++|+.+|++++|||||+
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~ 424 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTR 424 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 9999999875321100 0122333456788999999995 67899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|||+.++..+.+.|++++++ |.|+|+++|++ +++.++||++++|++|+++..|+++++
T Consensus 425 ~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 425 GVDVGAKKEIYQLINQFKAE-GLSIILVSSEM-PEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred CCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999764 89999999975 578999999999999999999987765
No 264
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.4e-39 Score=296.18 Aligned_cols=195 Identities=30% Similarity=0.456 Sum_probs=176.5
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~l 114 (606)
.+.+||+++|+.+++||..+|.||||||||||||+++.+.+ +++|++++.|++++. +.+|++|+|+.|.+.+|+.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis-p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~- 91 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS-PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD- 91 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC-CCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-
Confidence 45689999999999999999999999999999999999987 899999999999864 5689999999999999997
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||++||.|..+++..+ ..+.+..++|+++++.+ ..++.+.+||||||||++|+|.|..-|+||+|||||++||+
T Consensus 92 tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~ 166 (223)
T COG4619 92 TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDE 166 (223)
T ss_pred chhhccccchHHhccC-----CChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcCh
Confidence 9999999988765322 13456788999999976 57889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
.++..+-++|.++.++.+..++.++|++ ++..+.+||++-+..|+.
T Consensus 167 ~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 167 SNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 9999999999999878899999999986 467899999999999875
No 265
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-38 Score=288.90 Aligned_cols=206 Identities=28% Similarity=0.394 Sum_probs=182.1
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC--c-------ccccCeEEEEcCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS--P-------QLFQTTCGYVNHRT 108 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~--~-------~~~~~~i~yv~q~~ 108 (606)
+..++|-|++++.+.||-+.++||||||||||+|+|.-+.- +.+|+..+.|...+ . ..+|+.+|+|+|+-
T Consensus 13 g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~-p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy 91 (242)
T COG4161 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM-PRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQY 91 (242)
T ss_pred ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC-CCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhh
Confidence 34579999999999999999999999999999999986655 78899999876542 1 24788999999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
.++|+|||.|||.-+.. + -.++++.+.+.++.++|+++.|.+.+|+.+-.|||||+|||+|||||+.+|++|++||||
T Consensus 92 ~lwphltv~enlieap~-k-v~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdept 169 (242)
T COG4161 92 NLWPHLTVQENLIEAPC-R-VLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169 (242)
T ss_pred ccCchhHHHHHHHhhhH-H-HhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcc
Confidence 99999999999977643 2 235778888889999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRL 248 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~ 248 (606)
++|||.-..++++++++++. .|.|-++++|. .+-+.+.+.||+.|++|++|+.|+.+.
T Consensus 170 aaldpeitaqvv~iikel~~-tgitqvivthe-v~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 170 AALDPEITAQIVSIIKELAE-TGITQVIVTHE-VEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred cccCHHHHHHHHHHHHHHHh-cCceEEEEEee-hhHHHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999986 68888887785 456788999999999999999998764
No 266
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=5.2e-38 Score=303.93 Aligned_cols=167 Identities=30% Similarity=0.552 Sum_probs=147.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++.. ..+++.++|++|
T Consensus 11 ~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q--------- 80 (180)
T cd03214 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKDLASLSPKELARKIAYVPQ--------- 80 (180)
T ss_pred CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCcCCHHHHHHHHhHHHH---------
Confidence 3579999999999999999999999999999999999987 789999999987742 123344666665
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
+++.+|+.+..++.++.||||||||++||++|+.+|++++|||||+|||+.+
T Consensus 81 ----------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~ 132 (180)
T cd03214 81 ----------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH 132 (180)
T ss_pred ----------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 6777888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
+..+.+.|++++++.+.|+|+++|++ +++.+++|++++|++|++++.|
T Consensus 133 ~~~~~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 133 QIELLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999765478999999976 4678999999999999998654
No 267
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=6.3e-38 Score=348.41 Aligned_cols=198 Identities=22% Similarity=0.315 Sum_probs=171.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCC--C-C
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDL--I-P 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~--~-~ 112 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++.. ...++.++|++|++.. + +
T Consensus 15 ~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~-p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 15 DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP-LLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 3469999999999999999999999999999999999987 789999999876532 2234569999998642 1 1
Q ss_pred -----CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 113 -----SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 113 -----~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
.+||.|++.+. .+.+++++++++.+|+.+..++++++|||||||||+||+||+.+|++++||||
T Consensus 94 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (490)
T PRK10938 94 GEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEP 162 (490)
T ss_pred chhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 47888876431 12345688999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+|||+.++..+.+.|+++++ .|.|+|+++|++ +.+.++||++++|++|+++..|++++..
T Consensus 163 t~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 163 FDGLDVASRQQLAELLASLHQ-SGITLVLVLNRF-DEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred cccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999976 488999999975 5788999999999999999999987753
No 268
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-37 Score=305.83 Aligned_cols=182 Identities=28% Similarity=0.412 Sum_probs=158.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++++|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++.. ..+++.++|++|+..+++.+||
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 91 (200)
T PRK13540 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTL 91 (200)
T ss_pred CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCH
Confidence 3579999999999999999999999999999999999987 789999999987642 2356789999999989899999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+|++.+..... . ...++.++++.+++.+..+++++.||||||||++||++++.+|++++|||||+|||+.++
T Consensus 92 ~~~~~~~~~~~------~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~ 163 (200)
T PRK13540 92 RENCLYDIHFS------P--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSL 163 (200)
T ss_pred HHHHHHHHhcC------c--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHH
Confidence 99998865311 1 124678899999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeE
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRT 232 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v 232 (606)
..+.+.|+++++ .+.|+|+++|++ +..+.+|..
T Consensus 164 ~~l~~~l~~~~~-~~~tiii~sh~~--~~~~~~d~~ 196 (200)
T PRK13540 164 LTIITKIQEHRA-KGGAVLLTSHQD--LPLNKADYE 196 (200)
T ss_pred HHHHHHHHHHHH-cCCEEEEEeCCc--hhccccchh
Confidence 999999999865 488999999985 345667654
No 269
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-38 Score=348.61 Aligned_cols=206 Identities=21% Similarity=0.328 Sum_probs=176.8
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCC---CCCCC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRT---DLIPS 113 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~---~~~~~ 113 (606)
.+++|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|+++.. ...++.++|++|++ .+++.
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR-RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc-CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 58999999999999999999999999999999999987 788999999987642 12356799999986 48999
Q ss_pred CCHHHHHHHHHHccC-CCC--CCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 114 LTVEQTLYYAAHLSI-GPQ--VSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 114 lTV~e~l~f~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+||.|++.+...... ... ......+++++++++.+++. +..++++..|||||||||+||++|+.+|++|+|||||+
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~ 425 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTR 425 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCC
Confidence 999999987542110 001 12223345688999999994 67899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|||+.++.++.+.|+++++ .|.|||+++|+. +++.++||++++|++|++++.|+++++
T Consensus 426 ~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 426 GIDVGAKHEIYNVIYELAA-QGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred CCCHhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999976 488999999975 578999999999999999999987754
No 270
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.2e-37 Score=317.99 Aligned_cols=200 Identities=18% Similarity=0.299 Sum_probs=164.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+|+||||||||+|+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .|+
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv 111 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD-IFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-GSI 111 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC-CCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-cHH
Confidence 469999999999999999999999999999999999987 789999999998743 235678999999998887 499
Q ss_pred HHHHHHHHHccCCCCCCHHHH-----HHHHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVR-----NARIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+||+..... ...... ...+.+.++.+ +++...++.++.||||||||++||+||+.+|++++|||||+
T Consensus 112 ~~nl~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 185 (257)
T cd03288 112 RFNLDPECK------CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATA 185 (257)
T ss_pred HHhcCcCCC------CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 998853210 111111 11233444444 56666667788999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+.++..+.+.|+++. .+.|+|+++|++. .+.. |||+++|++|+++..|+++++.+
T Consensus 186 gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~~-~~~~-~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 186 SIDMATENILQKVVMTAF--ADRTVVTIAHRVS-TILD-ADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred CCCHHHHHHHHHHHHHhc--CCCEEEEEecChH-HHHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999874 3789999999875 4554 99999999999999999887654
No 271
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=9.4e-38 Score=360.35 Aligned_cols=195 Identities=23% Similarity=0.370 Sum_probs=168.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|+++++||.++|+||||||||||+|+|+|+.+ |.+|+|.+||+++.. ..+|+.++||+|++.+|+. |
T Consensus 465 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-T 542 (686)
T TIGR03797 465 GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET-PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-S 542 (686)
T ss_pred CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-c
Confidence 3579999999999999999999999999999999999998 789999999999853 4578999999999999976 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-------ccc----CCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-------RRN----ISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~----v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
++||+.++.. .+. +++.++++..++.+.. |+. ...||||||||++|||||+++|++++|
T Consensus 543 I~eNi~~~~~------~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiL 612 (686)
T TIGR03797 543 IFENIAGGAP------LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLF 612 (686)
T ss_pred HHHHHhcCCC------CCH----HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999987521 222 3466677777665433 232 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||++||+.+..++.+.|+++ ++|+|+++|++ +..+.+|+|++|++|+++..|+.+++++
T Consensus 613 DEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 613 DEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred eCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999875 47999999986 4567799999999999999999988764
No 272
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.8e-37 Score=300.69 Aligned_cols=161 Identities=29% Similarity=0.505 Sum_probs=145.5
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCC---CCCCCC
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRT---DLIPSL 114 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~---~~~~~l 114 (606)
+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.. ...++.++|++|++ .+++.+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 93 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL 93 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC
Confidence 8999999999999999999999999999999999987 789999999988753 12467899999984 578899
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
|++||+.+... |||||||||+||+||+.+|++++|||||+|||+.
T Consensus 94 t~~e~l~~~~~-----------------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~ 138 (182)
T cd03215 94 SVAENIALSSL-----------------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVG 138 (182)
T ss_pred cHHHHHHHHhh-----------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHH
Confidence 99999876421 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
++..+.+.|+++++ .++|+|+++|++ +++.++||++++|++|++
T Consensus 139 ~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 139 AKAEIYRLIRELAD-AGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 99999999999975 488999999975 578899999999999974
No 273
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.6e-37 Score=346.63 Aligned_cols=205 Identities=24% Similarity=0.326 Sum_probs=173.7
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCC---CCCCCC
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRT---DLIPSL 114 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~---~~~~~l 114 (606)
+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|++ .+++.+
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~ 356 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP-ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA 356 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC
Confidence 6999999999999999999999999999999999987 7889999999887431 1346799999984 488899
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||.|++.................+++++++++.+++. +..++++++|||||||||+||++|+.+|++|||||||+|||+
T Consensus 357 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~ 436 (510)
T PRK15439 357 PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV 436 (510)
T ss_pred cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcCh
Confidence 9999986432110010111222345688999999997 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.++..+.+.|+++++ .|.|+|+++|++ +++.++||++++|++|+++..|.++++
T Consensus 437 ~~~~~l~~~l~~l~~-~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 437 SARNDIYQLIRSIAA-QNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred hHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999999999986 489999999975 578999999999999999998876543
No 274
>KOG0058|consensus
Probab=100.00 E-value=6.4e-38 Score=344.89 Aligned_cols=202 Identities=26% Similarity=0.472 Sum_probs=171.6
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~ 113 (606)
.++.+||||+||+|+|||.+||+||||+||||+.++|-.++. |.+|+|++||+|+.+ ..+|++||+|.|+|.+|..
T Consensus 478 Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~-PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~ 556 (716)
T KOG0058|consen 478 RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD-PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG 556 (716)
T ss_pred CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecc
Confidence 445679999999999999999999999999999999999988 899999999999864 4578999999999999986
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHH-----HHHHHHcCCchhhcccC----CCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARI-----RQVLADLALSNVARRNI----SELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~v----~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
||+|||.++.. +.+.++....+ .+.+. ++.+-.|+.+ ..||||||||++|||||++||+||||
T Consensus 557 -sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLIL 628 (716)
T KOG0058|consen 557 -SIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLIL 628 (716)
T ss_pred -cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEE
Confidence 99999999864 33443332222 22222 4444455555 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||.||+||+.+...+.+.|.+..+ ++|||++.|.. ...+.+|+|+|+++|++++.|.-+|+++
T Consensus 629 DEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRL--STV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 629 DEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRL--STVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred echhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhh--hHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 999999999999999999998864 58999988864 5788999999999999999999888865
No 275
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.4e-37 Score=298.63 Aligned_cols=162 Identities=30% Similarity=0.561 Sum_probs=145.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .|++
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 92 (178)
T cd03247 15 QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK-PQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLR 92 (178)
T ss_pred ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHH
Confidence 369999999999999999999999999999999999987 789999999987642 235678999999988776 6998
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+ +..||||||||++||+||+.+|++++|||||+|||+.++.
T Consensus 93 ~~i-------------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~ 135 (178)
T cd03247 93 NNL-------------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITER 135 (178)
T ss_pred Hhh-------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 886 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
.+++.|++++ + ++|+|+++|++. ++ +.+|++++|++|++++.|
T Consensus 136 ~l~~~l~~~~-~-~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 136 QLLSLIFEVL-K-DKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHHHHHHc-C-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 9999999984 3 789999999864 45 579999999999998754
No 276
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.1e-37 Score=361.19 Aligned_cols=196 Identities=23% Similarity=0.399 Sum_probs=166.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|+++++||.++|+||||||||||+|+|+|+.+ |.+|+|.+||.++.. ..+|+.++||+|++.+|+. |
T Consensus 491 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-T 568 (710)
T TIGR03796 491 EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ-PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-T 568 (710)
T ss_pred CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-c
Confidence 3579999999999999999999999999999999999998 789999999998753 4578999999999999975 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-----------hcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-----------ARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
++||+.++. + ..+. +++.++++..++.+. ..+....||||||||++|||||+++|++++|
T Consensus 569 i~eNi~l~~----~-~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliL 639 (710)
T TIGR03796 569 VRDNLTLWD----P-TIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILIL 639 (710)
T ss_pred HHHHhhCCC----C-CCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 999997642 1 2232 345555665555432 2233457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||++||+.+..++.+.|++ .++|+|+++|++ +..+.||||++|++|+++..|+.+++++
T Consensus 640 DEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl--~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 640 DEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL--STIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred ECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH--HHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 999999999999999999975 378999999986 4567799999999999999999998865
No 277
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=3.3e-37 Score=296.39 Aligned_cols=156 Identities=25% Similarity=0.473 Sum_probs=141.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+++|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++. ||
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv 92 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SI 92 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cH
Confidence 469999999999999999999999999999999999987 789999999988743 2356789999999988874 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+ ||||||||++||++|+.+|++++|||||+|||+.++
T Consensus 93 ~~~l----------------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~ 132 (173)
T cd03246 93 AENI----------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGE 132 (173)
T ss_pred HHHC----------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHH
Confidence 9886 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
..+.+.|+++++ .|+|+|+++|++. .+ +.||++++|++|++
T Consensus 133 ~~l~~~l~~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 133 RALNQAIAALKA-AGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999975 4899999999864 45 68999999999974
No 278
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.9e-37 Score=352.22 Aligned_cols=196 Identities=23% Similarity=0.380 Sum_probs=170.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||.++|+|+||||||||+|+|+|+.+ |.+|+|.+||.++++ +.+|+.++|++|++.+|+. |+
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~-p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti 431 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP-LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TF 431 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hH
Confidence 469999999999999999999999999999999999998 789999999998753 4578999999999999987 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-------ccc----CCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-------RRN----ISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~----v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+|||.++. ..+ ++++.++++.+|+.+.. |+. ...||||||||++|||||+++|++++||
T Consensus 432 ~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlD 501 (592)
T PRK10790 432 LANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILD 501 (592)
T ss_pred HHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 99998853 122 23466777777765433 232 3569999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.+...+.+.|+++.+ ++|+|+++|++ +..+.||+|++|++|+++..|+.+++.+
T Consensus 502 Epts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 502 EATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred CCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999998853 68999999987 4577899999999999999999998864
No 279
>KOG0057|consensus
Probab=100.00 E-value=2.3e-37 Score=330.18 Aligned_cols=197 Identities=26% Similarity=0.402 Sum_probs=171.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
+++||+++||+|++||-+||+|+|||||||+||+|.+... .+|+|++||+++++ +.+|+.|||||||..+|.+ |
T Consensus 364 k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-T 440 (591)
T KOG0057|consen 364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-T 440 (591)
T ss_pred CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhhhChHHhhhheeEeCCcccccch-h
Confidence 4459999999999999999999999999999999999875 68999999999854 4589999999999999876 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcc-----------cCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR-----------NISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-----------~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
|.+|+.++.. ..+. +++.++.++.|+.+.-.+ +...|||||||||+||||++++|+|+++
T Consensus 441 Il~NI~YGn~-----sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~ 511 (591)
T KOG0057|consen 441 ILYNIKYGNP-----SASD----EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLL 511 (591)
T ss_pred HHHHhhcCCC-----CcCH----HHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEe
Confidence 9999998752 2333 456667777777654333 3356999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||||.||..+..++++.+++. ..++|+|++.|.. +..+.||+|++|++|++...|+.++++.
T Consensus 512 DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 512 DEATSALDSETEREILDMIMDV--MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred cCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 9999999999999999999984 3689999999964 6889999999999999999999999986
No 280
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=3e-37 Score=349.87 Aligned_cols=198 Identities=24% Similarity=0.389 Sum_probs=168.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||.++|+|+||||||||+|+|+|+.+ |.+|+|.+||.+++. ..+++.++|++|++.+|+. |+
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~-p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti 433 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD-IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TI 433 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC-CCCceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hH
Confidence 579999999999999999999999999999999999998 789999999998753 3578899999999999975 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-------hcccC----CCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-------ARRNI----SELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v----~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++. +...+. ++++++++..++.+. .|+.+ ..||||||||++|||||+++|++++||
T Consensus 434 ~~Ni~~~~----~~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililD 505 (582)
T PRK11176 434 ANNIAYAR----TEQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILD 505 (582)
T ss_pred HHHHhcCC----CCCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99998752 111232 345566666655432 23333 569999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.+...+.+.|+++. .++|+|+++|++ +..+.||+|++|++|+++..|+.+++.+
T Consensus 506 EptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 506 EATSALDTESERAIQAALDELQ--KNRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred CccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999875 368999999986 4678899999999999999999988764
No 281
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=336.42 Aligned_cols=198 Identities=25% Similarity=0.412 Sum_probs=172.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++++|+|+++++|+.++|+|+||||||||+++|+|+.+ +++|+|.+||.+..+ ..+|++++||+|++.+++. |
T Consensus 333 g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~-~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-T 410 (559)
T COG4988 333 GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA-PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-T 410 (559)
T ss_pred CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC-CCCceEEECCccccccCHHHHHhHeeeeCCCCccccc-c
Confidence 3489999999999999999999999999999999999998 789999999988653 5689999999999999986 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcc----------cCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR----------NISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----------~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
++||+.++.. ..+ ++.+.++++..|+.+..+. .-++|||||+|||++||||+++++++++|
T Consensus 411 ireNi~l~~~-----~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llD 481 (559)
T COG4988 411 IRENILLARP-----DAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLD 481 (559)
T ss_pred HHHHhhccCC-----cCC----HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 9999988642 223 3456677777766554332 23579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||.++...+.+.|.++++ ++|+++++|++ ....-+|+|++|++|+++..|..+++.+
T Consensus 482 EpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl--~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 482 EPTAHLDAETEQIILQALQELAK--QKTVLVITHRL--EDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred CCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcCh--HHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999999999999986 48999999975 4677899999999999999999998854
No 282
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.8e-37 Score=326.11 Aligned_cols=204 Identities=27% Similarity=0.424 Sum_probs=185.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~~l 114 (606)
...+++|||++|++||++||+|.||||||||+|+|.|.++ |++|+|.++|+++.- +..+..||+|.|+..++|++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~-P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~l 94 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ-PDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTL 94 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc-CCcceEEECCEEeccCCHHHHHHcCCcEEeecccccccc
Confidence 4689999999999999999999999999999999999998 899999999998743 23677899999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.||+..+..-...........+++++++.+++||.-..|+++.+||-||||||.|-++|..+|++|||||||+-|-|.
T Consensus 95 TV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~ 174 (501)
T COG3845 95 TVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQ 174 (501)
T ss_pred chhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 99999999875332334566778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecC
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGP 245 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~ 245 (606)
.+.++++.|+++++ .|+|||+++|. ..|+.++|||+.||..|+++..-+
T Consensus 175 E~~~lf~~l~~l~~-~G~tIi~ITHK-L~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 175 EADELFEILRRLAA-EGKTIIFITHK-LKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEecc-HHHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999986 59999999996 579999999999999999886655
No 283
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.9e-37 Score=302.84 Aligned_cols=184 Identities=21% Similarity=0.340 Sum_probs=155.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++ .||
T Consensus 21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv 98 (207)
T cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE-AEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTI 98 (207)
T ss_pred cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC-CCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccH
Confidence 469999999999999999999999999999999999987 789999999998642 235678999999998887 499
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.+.. .... +.+.+.++ .++.++.|||||||||+|||+|+.+|+++++||||+|||+.++
T Consensus 99 ~~~l~~~~------~~~~----~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 161 (207)
T cd03369 99 RSNLDPFD------EYSD----EEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATD 161 (207)
T ss_pred HHHhcccC------CCCH----HHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHH
Confidence 99996521 1121 22334443 3678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecCh
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~ 246 (606)
..+.+.|+++. .++|+|+++|++. .+.. +|++++|++|+++..|++
T Consensus 162 ~~l~~~l~~~~--~~~tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 162 ALIQKTIREEF--TNSTILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHHHHhc--CCCEEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 99999999984 3789999999864 4544 999999999999988763
No 284
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.1e-37 Score=347.02 Aligned_cols=202 Identities=25% Similarity=0.412 Sum_probs=170.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||.++|+||||||||||+|+|+|..+ +.+|+|.+||.++.. ..+|+.++|++|++.+++. |+
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti 408 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP-PTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TV 408 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-cH
Confidence 579999999999999999999999999999999999987 789999999998753 3467899999999999986 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRN-----ARIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+||+.+... ..+.++.. ...++.++.+ |++...++....||||||||++||||++++|++++|||||+
T Consensus 409 ~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts 483 (544)
T TIGR01842 409 AENIARFGE-----NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNS 483 (544)
T ss_pred HHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999975321 12332211 1234455555 55655666778999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+.++.++.+.|+++.+ .++|+|+++|++. ..+.||+|++|++|++++.|+.+++.+
T Consensus 484 ~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 484 NLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred ccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999998853 4789999999874 567899999999999999999887653
No 285
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.4e-37 Score=348.62 Aligned_cols=197 Identities=31% Similarity=0.513 Sum_probs=171.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||.++|+||||||||||+|+|+|..+ +.+|+|.+||.++.+ ..+|+.++|++|++.+|+. |+
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti 430 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD-PQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TL 430 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cH
Confidence 469999999999999999999999999999999999988 789999999998753 4578899999999999875 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcc----------cCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR----------NISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----------~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
+||+.++.. ..+ ++++.++++..++.+..++ ....||||||||++|||||+++|++++|||
T Consensus 431 ~~Ni~~~~~-----~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE 501 (574)
T PRK11160 431 RDNLLLAAP-----NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDE 501 (574)
T ss_pred HHHhhcCCC-----ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999987531 122 3457788888888765443 345799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||++||+.+...+.+.|+++. .++|+|+++|+++ ..+.+|++++|++|+++..|+.+++++
T Consensus 502 ~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 502 PTEGLDAETERQILELLAEHA--QNKTVLMITHRLT--GLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred CcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChh--HHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999885 3789999999874 346699999999999999999988764
No 286
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1e-36 Score=302.78 Aligned_cols=195 Identities=15% Similarity=0.201 Sum_probs=163.0
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEE-ECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII-LDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~-~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
+|+|||+++++||+++|+||||||||||+|+|+|..+ +.+|+|. ++|.... +.+++.++|.+|+.||+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-~~sG~i~~~~~~~~~----------~~~~~~l~~~ltv~enl 70 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA-PDEGDFIGLRGDALP----------LGANSFILPGLTGEENA 70 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCCCEEEecCceec----------cccccccCCcCcHHHHH
Confidence 7999999999999999999999999999999999987 7899997 7765321 23456788999999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
.+..... .....+. .+.+.+.+++++..++++++||||||||++||+||+.+|+++++||||++||+.++..+.
T Consensus 71 ~~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~ 144 (213)
T PRK15177 71 RMMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQ 144 (213)
T ss_pred HHHHHHc---CCCHHHH---HHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHH
Confidence 9876532 1222221 223445678888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHHHc
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSI 256 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~~~ 256 (606)
+.|.+..+ ++++|+++|++ .++.++||++++|++|++++.|+.+++..+++..
T Consensus 145 ~~l~~~~~--~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 197 (213)
T PRK15177 145 AALACQLQ--QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQY 197 (213)
T ss_pred HHHHHHhh--CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHHH
Confidence 98866543 35788888876 4688899999999999999999999998877543
No 287
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.9e-37 Score=350.43 Aligned_cols=202 Identities=26% Similarity=0.429 Sum_probs=168.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|++++|||.+||+||||||||||+|.|.++.+ +.+|+|.+||++++. ..+|+.+++|+|++.+|. -|
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~-~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~T 418 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD-PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GT 418 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-cc
Confidence 5789999999999999999999999999999999999998 789999999998864 457899999999999998 69
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHH-----HHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARI-----RQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v-----~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
|+||+.++.. ..++++..+.+ .+.++.+ |++.........||||||||++||||++++|++++|||||
T Consensus 419 I~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaT 493 (567)
T COG1132 419 IRENIALGRP-----DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEAT 493 (567)
T ss_pred HHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 9999998753 23443332222 2333333 3333333344579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|+||+.+...+.+.++++. .++|+++++|+++ .+. .+|+|+||++|++++.|+.+++.+
T Consensus 494 SalD~~tE~~I~~~l~~l~--~~rT~iiIaHRls-ti~-~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 494 SALDTETEALIQDALKKLL--KGRTTLIIAHRLS-TIK-NADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred cccCHHhHHHHHHHHHHHh--cCCEEEEEeccHh-HHH-hCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999876 3578888889873 444 499999999999999999999876
No 288
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-36 Score=292.84 Aligned_cols=218 Identities=24% Similarity=0.321 Sum_probs=188.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-CCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-TTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~~l 114 (606)
+.||++||++|++||+.+||||||||||||.++|+|.-.- .++|+|.++|+++.. ++.|..+..-+|.|.=+|..
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 5899999999999999999999999999999999998531 567999999999853 34567788889999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNIS-ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~-~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
|+.+.|..+.+.+....-...+..+++++.++.+++.+ .+++.+. ++|||||||..|+.+++.+|++.+||||-||||
T Consensus 97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD 176 (251)
T COG0396 97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176 (251)
T ss_pred eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence 99999998887543221113456778999999999987 7788874 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcC--CeEEEEcCCeEEEecChhHHHHHHHHcCCCCC
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFL--DRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCP 261 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~--D~v~vL~~G~~v~~G~~~~~~~~f~~~G~~~~ 261 (606)
..+-..+.+.++++.++ +.+++++||.. .+.++. |+|.+|.+|||+..|.+ ++.+..+.-||.|-
T Consensus 177 Idalk~V~~~i~~lr~~-~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~~ 243 (251)
T COG0396 177 IDALKIVAEGINALREE-GRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDWL 243 (251)
T ss_pred HHHHHHHHHHHHHHhcC-CCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHHh
Confidence 99999999999999764 77777777763 678877 99999999999999999 88888888898763
No 289
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.6e-36 Score=307.63 Aligned_cols=190 Identities=22% Similarity=0.298 Sum_probs=159.9
Q ss_pred eEEeeEEEEe-----CCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCH
Q psy10223 42 ILKDISLEVR-----PGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 42 iL~~vs~~v~-----~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV 116 (606)
.++|++++++ +||+++|+||||||||||||+|+|..+ +.+|+|.++|. .++|++|+....+.+||
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~-p~~G~i~~~g~---------~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK-PDEGDIEIELD---------TVSYKPQYIKADYEGTV 78 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCCeEEECCc---------eEEEecccccCCCCCCH
Confidence 5666666665 799999999999999999999999987 78899999874 58999999887788999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
.|++.+..... . . .....+++++.+++.+..+++++.|||||||||+||++|+.+|++++|||||++||+.++
T Consensus 79 ~e~l~~~~~~~---~-~---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~ 151 (246)
T cd03237 79 RDLLSSITKDF---Y-T---HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQR 151 (246)
T ss_pred HHHHHHHhhhc---c-c---cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 99997654311 0 1 123467889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE--EecChhHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI--YAGPTRLM 249 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v--~~G~~~~~ 249 (606)
..+.+.|++++++.++|+|+++|+. +.+..+||++++|+++..+ ..+++.++
T Consensus 152 ~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 152 LMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 9999999999876689999999975 5788899999999765433 34444443
No 290
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.9e-37 Score=355.63 Aligned_cols=199 Identities=26% Similarity=0.434 Sum_probs=169.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
.+++|+|+|+++++||.++|+|+||||||||+|+|+|+.+ +.+|+|.+||.+++. ..+|+.++||+|++.+|+. |
T Consensus 477 ~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-T 554 (694)
T TIGR03375 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ-PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-T 554 (694)
T ss_pred CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-h
Confidence 3579999999999999999999999999999999999998 789999999998753 4578999999999999986 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-----------hcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-----------ARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
++||+.++.. ..+. +++.++++..++.+. ..+....||||||||++|||||+++|++++|
T Consensus 555 I~eNi~~~~~-----~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliL 625 (694)
T TIGR03375 555 LRDNIALGAP-----YADD----EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLL 625 (694)
T ss_pred HHHHHhCCCC-----CCCH----HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999987521 2233 345555555555432 2233457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEY 252 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~ 252 (606)
||||++||+.+..++.+.|+++. .++|+|+++|++ +..+.||+|++|++|++++.|+.+++++.
T Consensus 626 DE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl--~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 626 DEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRT--SLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCH--HHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999885 378999999987 35688999999999999999999988653
No 291
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=306.28 Aligned_cols=210 Identities=24% Similarity=0.375 Sum_probs=188.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEc-CCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVN-HRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~-q~~~~~~~lT 115 (606)
...+++|+||+|++||+++++|+|||||||+||+|+|.+. |.+|.|.++|...-. +.+-+++++|+ |...+.-.+.
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~-p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL-PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc-cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 4568999999999999999999999999999999999998 889999999987532 23445677764 5566777777
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
+.|++......+ .++.++.+++.+.+.+.++|+...+.++|.||-|||.|+.||.+|+++|+||+|||||=|||...
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~a 191 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNA 191 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhH
Confidence 888887765543 57788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHH
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYF 253 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f 253 (606)
+..+.+.|++..++.+.||+.|+|. .+++.++||||++|+.|+++|+|+.+++.+-|
T Consensus 192 q~~ir~Flke~n~~~~aTVllTTH~-~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 192 QANIREFLKEYNEERQATVLLTTHI-FDDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred HHHHHHHHHHHHHhhCceEEEEecc-hhhHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence 9999999999999999999999985 57899999999999999999999999998766
No 292
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3.6e-37 Score=356.21 Aligned_cols=196 Identities=25% Similarity=0.437 Sum_probs=164.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|++++|||.++|+||||||||||+|+|+|..+ +.+|+|.+||+++++ ..+|++++||+|++.+|+. |
T Consensus 493 ~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-T 570 (711)
T TIGR00958 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ-PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-S 570 (711)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-C
Confidence 3579999999999999999999999999999999999998 789999999999753 4578899999999999875 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-------cc----cCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-------RR----NISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~----~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
++|||.++.. ..++ +++.++++..++.+.. |+ ....||||||||++||||++++|+|++|
T Consensus 571 IreNI~~g~~-----~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILIL 641 (711)
T TIGR00958 571 VRENIAYGLT-----DTPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLIL 641 (711)
T ss_pred HHHHHhcCCC-----CCCH----HHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999987532 2222 3455666666654322 33 3357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||++||+.+...+.+ .. ...++|+|+++|++ +..+.+|+|++|++|++++.|+.+++++
T Consensus 642 DEpTSaLD~~te~~i~~-~~---~~~~~TvIiItHrl--~~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 642 DEATSALDAECEQLLQE-SR---SRASRTVLLIAHRL--STVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EccccccCHHHHHHHHH-hh---ccCCCeEEEEeccH--HHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 99999999999998888 22 23578999999986 3567899999999999999999998865
No 293
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=331.79 Aligned_cols=198 Identities=28% Similarity=0.461 Sum_probs=172.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
..++|+|+|+++++||.+||+|+||||||||+++|+|..+ +.+|+|.+||.++.. +..++.++.++|...+|.. |
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~-~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-T 427 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD-PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-T 427 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC-CCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-H
Confidence 3469999999999999999999999999999999999988 789999999988743 3477889999999998876 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhc-----------ccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR-----------RNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-----------~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
+++||.++.. +.+. +.+.++++++||++... ..-+.||||||||++|||+|++|.++++|
T Consensus 428 lr~NL~lA~~-----~AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lL 498 (573)
T COG4987 428 LRDNLRLANP-----DASD----EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLL 498 (573)
T ss_pred HHHHHhhcCC-----CCCH----HHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEe
Confidence 9999988753 2333 45667778887766433 33468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||.|||+.|..++++.|.+.++ |+|+|+++|+.. -.+.||||++|++|++++.|...++.+
T Consensus 499 DEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~--~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 499 DEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred cCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccc--cHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 999999999999999999998764 899999999865 367899999999999999999998865
No 294
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-36 Score=310.96 Aligned_cols=209 Identities=25% Similarity=0.378 Sum_probs=190.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCC--C
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTD--L 110 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~--~ 110 (606)
...+++++|+++++||-++|+|.||||||||-.+|.++.+ .+|+|.++|++++. ..+|+++-.|+||+. +
T Consensus 299 ~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~--s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSL 376 (534)
T COG4172 299 HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP--SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSL 376 (534)
T ss_pred heEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC--cCceEEECCccccccChhhhhhhhhhceEEEeCCCCCC
Confidence 3579999999999999999999999999999999999986 34999999999863 136788999999974 8
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
.|.+||.|-+.-++....+ ..++.+..+++.++|+.+||+. ..++++++.|||||||++||||++.+|++++||||||
T Consensus 377 sPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTS 455 (534)
T COG4172 377 SPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTS 455 (534)
T ss_pred CcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCch
Confidence 9999999999998887543 5788899999999999999975 7899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.||-+-+.+++++|+++.++.|.+-++++|+ ..-+-.+||+|+||++|++|+.|+++++.+
T Consensus 456 ALD~SVQaQvv~LLr~LQ~k~~LsYLFISHD-L~VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 456 ALDRSVQAQVLDLLRDLQQKHGLSYLFISHD-LAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred HhhHHHHHHHHHHHHHHHHHhCCeEEEEecc-HHHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 9999999999999999999999999999886 457889999999999999999999998753
No 295
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=8.7e-37 Score=346.54 Aligned_cols=197 Identities=22% Similarity=0.390 Sum_probs=166.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|++++|||.++|+|+||||||||+|+|+|+.+ |.+|+|.+||.+++. ..+|+.++|++|++.+|+. |+
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti 425 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD-PQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SI 425 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cH
Confidence 569999999999999999999999999999999999998 789999999998754 4578899999999999875 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-----------VARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++. + ..++ +++.++++..++.+ ........||||||||++|||||+++|++++||
T Consensus 426 ~~Ni~~~~----~-~~~d----~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLD 496 (588)
T PRK13657 426 EDNIRVGR----P-DATD----EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILD 496 (588)
T ss_pred HHHHhcCC----C-CCCH----HHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99998752 1 2232 23444455544432 222334569999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.+...+.+.|+++. .++|+|+++|++ +..+.+|||++|++|+++..|+.++..+
T Consensus 497 Epts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~--~~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 497 EATSALDVETEAKVKAALDELM--KGRTTFIIAHRL--STVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred CCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecH--HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999874 378999999987 4578899999999999999999887753
No 296
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=4.8e-37 Score=355.64 Aligned_cols=198 Identities=23% Similarity=0.372 Sum_probs=167.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|+++++||.++|+||||||||||+|+|+|+.+ |.+|+|.+||.++++ ..+|+.++||+|++.+|+. |
T Consensus 486 ~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-T 563 (708)
T TIGR01193 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ-ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-S 563 (708)
T ss_pred CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-H
Confidence 4579999999999999999999999999999999999998 789999999998743 4578899999999999976 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-----------VARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
++||+.++.. ...+. +++.++++..++.+ ........||||||||++||||++++|++++|
T Consensus 564 I~eNi~l~~~----~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliL 635 (708)
T TIGR01193 564 ILENLLLGAK----ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLIL 635 (708)
T ss_pred HHHHHhccCC----CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999988632 12232 33455555555433 22233457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||++||+.+...+.+.|+++ .++|+|+++|++ +..+.+|+|++|++|+++..|+.+++++
T Consensus 636 DE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~--~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 636 DESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRL--SVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred eCccccCCHHHHHHHHHHHHHh---cCCEEEEEecch--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999874 368999999987 4568899999999999999999988764
No 297
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.6e-36 Score=299.61 Aligned_cols=185 Identities=19% Similarity=0.313 Sum_probs=152.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~~~~~ 112 (606)
+++++|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~- 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL- 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-
Confidence 569999999999999999999999999999999999987 789999999987632 12356799999999877
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-----------hcccCCCCCHHHHHHHHHHHHHhhCCCE
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-----------ARRNISELTPSEHRRVVIGTQLVKDPVL 181 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~v~~LSgGerqRvsIa~aL~~~p~l 181 (606)
..|++||+.+... ... ++.+++++.+++.+. .++++..|||||||||+||++|+.+|++
T Consensus 92 ~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~i 161 (218)
T cd03290 92 NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNI 161 (218)
T ss_pred cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 5799999977431 111 123344555555432 3567899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHH--HHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 182 LLLDEPTVNLDPLSTYLIVS--MLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 182 lllDEPTsgLD~~~~~~i~~--~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
++|||||+|||+.++..+++ +++.+. +.|.|+|+++|++. .+ ..+|++++|++|+
T Consensus 162 lllDEPt~~LD~~~~~~l~~~~ll~~~~-~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 162 VFLDDPFSALDIHLSDHLMQEGILKFLQ-DDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHHh-cCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 99999999999999999998 666654 45899999999874 45 5799999999884
No 298
>KOG0055|consensus
Probab=100.00 E-value=5.7e-37 Score=354.26 Aligned_cols=199 Identities=25% Similarity=0.445 Sum_probs=165.8
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~l 114 (606)
++..||+|+|+.|++||.++|+|||||||||++++|.+.+. |.+|+|.+||.++.. +.+|.+||.|.|+|.+|. .
T Consensus 364 pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd-P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~-~ 441 (1228)
T KOG0055|consen 364 PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD-PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA-T 441 (1228)
T ss_pred CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCceEEEcCccchhcchHHHHhhcCeeeechhhhc-c
Confidence 34579999999999999999999999999999999999998 889999999998754 457899999999998885 5
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-------CCchhhcccC----CCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL-------ALSNVARRNI----SELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~v----~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
|++||+.|+.. +.++++ +.++.+.. .|.+-.++.+ -+||||||||++|||||+.+|+||+
T Consensus 442 tI~eNI~~G~~-----dat~~~----i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILL 512 (1228)
T KOG0055|consen 442 TIRENIRYGKP-----DATREE----IEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILL 512 (1228)
T ss_pred cHHHHHhcCCC-----cccHHH----HHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEE
Confidence 99999998642 233333 23333222 2233334443 3599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||||++||+.+...+.+.|++.. .|+|.|++.|+.+ .+.+ +|++++|++|++++.|+.+|+++
T Consensus 513 LDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRLS-tIrn-aD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 513 LDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRLS-TIRN-ADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred ecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeehh-hhhc-cCEEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999999875 3778888888754 4554 99999999999999999999976
No 299
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.8e-36 Score=298.63 Aligned_cols=179 Identities=21% Similarity=0.293 Sum_probs=145.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++| .++|++|++.+++ .|++||
T Consensus 18 ~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~-~~~G~i~~~g----------~i~~~~q~~~l~~-~t~~en 85 (204)
T cd03250 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE-KLSGSVSVPG----------SIAYVSQEPWIQN-GTIREN 85 (204)
T ss_pred cceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC-CCCCeEEEcC----------EEEEEecCchhcc-CcHHHH
Confidence 369999999999999999999999999999999999987 7899999998 5999999998874 699999
Q ss_pred HHHHHHccCCCCCCHHHHHHH-----HHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 120 LYYAAHLSIGPQVSRYVRNAR-----IRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
+.+... .......+. +.+.+..+ ++....++.+++||+|||||++||++|+.+|+++++||||+|||
T Consensus 86 l~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 86 ILFGKP------FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred hccCCC------cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 987432 111111111 11222222 33444566789999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 193 PLSTYLIVS-MLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 193 ~~~~~~i~~-~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
+.++..+.+ +++++.+ .++|+|+++|++. .+.. +|++++|++|+
T Consensus 160 ~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 160 AHVGRHIFENCILGLLL-NNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHHhcc-CCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 999999998 4666655 4899999999864 5555 99999999985
No 300
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.3e-36 Score=342.53 Aligned_cols=201 Identities=19% Similarity=0.338 Sum_probs=166.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||.++|+||||||||||+++|+|..+ +.+|+|.+||.++.. ..+++.++|++|++.+++ .|+
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti 425 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD-PTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-RSI 425 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC-CCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-ccH
Confidence 468999999999999999999999999999999999987 789999999998753 347789999999998886 599
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHH-----HHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARI-----RQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v-----~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+||+.++.. ..+.++..+.. .+.+..+ |++...++....||||||||++|||||+++|++++|||||+
T Consensus 426 ~~Ni~~~~~-----~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts 500 (585)
T TIGR01192 426 RENIRLGRE-----GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATS 500 (585)
T ss_pred HHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 999987531 22332222211 2223322 44545556677899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+.++..+.+.|+++. .++|+|+++|++. ..+.||+|++|++|+++..|+.++..+
T Consensus 501 ~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 501 ALDVETEARVKNAIDALR--KNRTTFIIAHRLS--TVRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred CCCHHHHHHHHHHHHHHh--CCCEEEEEEcChH--HHHcCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999874 4789999999873 346799999999999999999887754
No 301
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.6e-36 Score=350.38 Aligned_cols=198 Identities=21% Similarity=0.387 Sum_probs=167.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+|+|+|+++++||.++|+|+||||||||+|+|+|+.+ +.+|+|.+||.+++. ..+|+.++||+|++.+|+. |
T Consensus 469 ~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~-p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-t 546 (694)
T TIGR01846 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT-PQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-S 546 (694)
T ss_pred CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-h
Confidence 3569999999999999999999999999999999999988 789999999998753 4578899999999998875 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-----------CchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA-----------LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-----------L~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
++||+.++. + ..+. +++.++++..+ ++...++....||||||||++|||||+++|++++|
T Consensus 547 i~eNi~~~~----~-~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ilil 617 (694)
T TIGR01846 547 IRDNIALCN----P-GAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIF 617 (694)
T ss_pred HHHHHhcCC----C-CCCH----HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999997642 1 2232 23344444444 33333444578999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||++||+.+..++.+.|+++. .++|+|+++|++. ..+.||+|++|++|++++.|+.+++.+
T Consensus 618 DEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 618 DEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLS--TVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChH--HHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999984 4789999999873 456799999999999999999988764
No 302
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-36 Score=288.56 Aligned_cols=153 Identities=33% Similarity=0.573 Sum_probs=138.1
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .|+.
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~ 93 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIR 93 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHH
Confidence 69999999999999999999999999999999999987 788999999988642 235678999999987776 5888
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+ |||||||||+||++|+.+|++++|||||+|||+.++.
T Consensus 94 e~l----------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~ 133 (171)
T cd03228 94 ENI----------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEA 133 (171)
T ss_pred HHh----------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHH
Confidence 886 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
++.+.|+++. + ++|+|+++|++. ++.. ||++++|++|+
T Consensus 134 ~l~~~l~~~~-~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 134 LILEALRALA-K-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHHHHhc-C-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 9999999985 3 689999999864 5665 99999999985
No 303
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-37 Score=299.21 Aligned_cols=208 Identities=27% Similarity=0.395 Sum_probs=177.6
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCC--CC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHR--TD 109 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~--~~ 109 (606)
.+++|+||+|+|++|++||..+|+|||||||||||++++|..+ +.+|.+.+.|+.... .++|++||+|... ..
T Consensus 40 ~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~-pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~ 118 (257)
T COG1119 40 RRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP-PSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHER 118 (257)
T ss_pred EECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC-CCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhh
Confidence 4567899999999999999999999999999999999999987 679999999988743 3578999999754 34
Q ss_pred CCCCCCHHHHHHHHHHcc--CCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 110 LIPSLTVEQTLYYAAHLS--IGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
+.+..+|+|-+.-+.... .......++..+++..+++.+|+++.+|++.+.||-||||||-|||||+++|.+||||||
T Consensus 119 ~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP 198 (257)
T COG1119 119 FRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEP 198 (257)
T ss_pred cccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCc
Confidence 566788888776443321 111122345667889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh-CCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecC
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKR-KSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGP 245 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~-~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~ 245 (606)
++|||...+..+.+.|.+++.. .+.++|+++||+ +|+...++++++|++|++++.|.
T Consensus 199 ~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 199 AQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred cccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999753 367888889986 68999999999999999999874
No 304
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=339.38 Aligned_cols=204 Identities=25% Similarity=0.412 Sum_probs=181.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---cc----ccCeEEEEcCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QL----FQTTCGYVNHRTDLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~----~~~~i~yv~q~~~~~~ 112 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|+++.. +. .++.++|++|+..+++
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~ 99 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK-PTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLS 99 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCC
Confidence 579999999999999999999999999999999999987 789999999998753 11 2568999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+|+.||+.+..... .....+.++++.++++.+|+.+..|+.++.||||||||++|||+|+.+|+++++||||+|||
T Consensus 100 ~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD 176 (648)
T PRK10535 100 HLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176 (648)
T ss_pred CCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 999999998865421 23344556778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+.++..+.+.|+++++ .|+|+|+++|++. ..+.|||+++|++|++++.|++++..
T Consensus 177 ~~s~~~l~~ll~~l~~-~g~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 177 SHSGEEVMAILHQLRD-RGHTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHHHHHHHHHh-cCCEEEEECCCHH--HHHhCCEEEEEECCEEEeecCccccc
Confidence 9999999999999875 5899999999864 44679999999999999999998775
No 305
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.9e-36 Score=342.62 Aligned_cols=198 Identities=28% Similarity=0.428 Sum_probs=169.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||.++|+|+||||||||+|+|+|+.+ +.+|+|.+||.+++. ..+++.++|++|++.+|+. |+
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti 422 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE-PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TI 422 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cH
Confidence 579999999999999999999999999999999999998 788999999998753 4578899999999998876 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-------cccC----CCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-------RRNI----SELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~v----~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+|||.++. ++..++ +++.++++.+|+.+.. |+.+ +.||||||||++|||+++++|++++||
T Consensus 423 ~~Ni~~~~----~~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLD 494 (571)
T TIGR02203 423 ANNIAYGR----TEQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILD 494 (571)
T ss_pred HHHHhcCC----CCCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99998653 112232 4566677776665432 2333 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.+...+.+.|+++. .++|+|+++|++ ...+.||+|++|++|+++..|+.++..+
T Consensus 495 Epts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 495 EATSALDNESERLVQAALERLM--QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred CccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999999875 368999999987 5678899999999999999999988753
No 306
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.5e-36 Score=334.42 Aligned_cols=206 Identities=25% Similarity=0.335 Sum_probs=166.6
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~ 112 (606)
++++.+|+|+|+++++||+++|+||||||||||||+|+|..+.+.+|+|.++|.+... ...++.++|++|++.+++
T Consensus 270 ~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 349 (490)
T PRK10938 270 YNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDY 349 (490)
T ss_pred ECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhc
Confidence 3446799999999999999999999999999999999997642258999999986532 124567999999876544
Q ss_pred --CCCHHHHHHHHHHc--cCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 113 --SLTVEQTLYYAAHL--SIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 113 --~lTV~e~l~f~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
..|+.+++.++... ....... .+.+++++++++.+++.+ ..++++++|||||||||+||+||+.+|++++||||
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP 428 (490)
T PRK10938 350 RVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEP 428 (490)
T ss_pred ccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 35777776544211 0001112 223457889999999997 88999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHh-cCCeEEEEcCCeEEEec
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLP-FLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~-~~D~v~vL~~G~~v~~G 244 (606)
|+|||+.++..+.+.|++++++.+.|+|+++|+. +++.+ ++|++++|++|+++..-
T Consensus 429 t~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 429 LQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999875456799999975 46766 58999999999988753
No 307
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.2e-36 Score=341.85 Aligned_cols=197 Identities=19% Similarity=0.346 Sum_probs=166.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||.++|+||||||||||+|+|+|..+ |.+|+|.+||.++.. ..+|+.++|++|++.+|+. |+
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti 405 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD-VSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TV 405 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC-CCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cH
Confidence 569999999999999999999999999999999999987 789999999998753 3567889999999999875 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-----------hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-----------NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-----------~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++.. ..+. +++.++++..++. ...++....||||||||++|||||+++|++++||
T Consensus 406 ~~Ni~~~~~-----~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlD 476 (569)
T PRK10789 406 ANNIALGRP-----DATQ----QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILD 476 (569)
T ss_pred HHHHhcCCC-----CCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999977521 2232 2334444444443 2333445679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.+...+.+.|+++. .++|+|+++|++. ..+.+|++++|++|+++..|+.+++.+
T Consensus 477 Epts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 477 DALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred CccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999874 4789999999873 457799999999999999999888754
No 308
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-35 Score=291.24 Aligned_cols=179 Identities=19% Similarity=0.283 Sum_probs=152.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+++ +|+++++||+++|+|+||||||||+|+|+|..+ +.+|+|.++|.++... .++.++|++|+..+++.+||.||
T Consensus 14 ~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~-~~~~~~~~~~~~~~~~~~tv~~~ 90 (195)
T PRK13541 14 KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ-PSSGNIYYKNCNINNI-AKPYCTYIGHNLGLKLEMTVFEN 90 (195)
T ss_pred cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCcccChh-hhhhEEeccCCcCCCccCCHHHH
Confidence 44555 999999999999999999999999999999987 7899999999887532 23568999999888889999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+.+..... . ..+++.++++.+++.+..++.++.||||||||++||++++.+|+++++||||+|||+.++..+
T Consensus 91 l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l 162 (195)
T PRK13541 91 LKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLL 162 (195)
T ss_pred HHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 98865421 1 134577889999999989999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeE
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRT 232 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v 232 (606)
.+.|++..+ .++|+|+++|++. ..+.+|-+
T Consensus 163 ~~~l~~~~~-~~~tiii~sh~~~--~i~~~~~~ 192 (195)
T PRK13541 163 NNLIVMKAN-SGGIVLLSSHLES--SIKSAQIL 192 (195)
T ss_pred HHHHHHHHh-CCCEEEEEeCCcc--ccchhhee
Confidence 999987654 5899999999863 33446654
No 309
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.1e-35 Score=283.31 Aligned_cols=147 Identities=30% Similarity=0.455 Sum_probs=133.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|
T Consensus 12 ~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q-------- 82 (163)
T cd03216 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKEVSFASPRDARRAGIAMVYQ-------- 82 (163)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEECCcCCHHHHHhcCeEEEEe--------
Confidence 4579999999999999999999999999999999999987 789999999988753 124567888888
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||||||||++||+||+.+|+++++||||+|||+.
T Consensus 83 ----------------------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~ 116 (163)
T cd03216 83 ----------------------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPA 116 (163)
T ss_pred ----------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEE
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIY 242 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~ 242 (606)
++..+.+.|+++++ .+.|+|+++|++ +++.+.+|++++|++|++++
T Consensus 117 ~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 117 EVERLFKVIRRLRA-QGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 99999999999975 488999999975 46888999999999999875
No 310
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.8e-36 Score=341.61 Aligned_cols=197 Identities=23% Similarity=0.391 Sum_probs=166.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|++++|||.++|+|+||||||||+|+|+|+.+ +.+|+|.+||.++++ ..+++.++|++|++.+|+. |+
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~-p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti 430 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD-PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SV 430 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cH
Confidence 579999999999999999999999999999999999998 788999999998753 3567889999999998875 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------cccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-----------RRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++.. ..+. +++.++++..++.+.. .+....||||||||++||||++++|+++++|
T Consensus 431 ~~Ni~~~~~-----~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililD 501 (576)
T TIGR02204 431 MENIRYGRP-----DATD----EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLD 501 (576)
T ss_pred HHHHhcCCC-----CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEe
Confidence 999977421 1222 3455566666554322 2334569999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.++..+.+.|+++. .++|+|+++|++ +..+.+|||++|++|+++..|+.++..+
T Consensus 502 Epts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 502 EATSALDAESEQLVQQALETLM--KGRTTLIIAHRL--ATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred CcccccCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 9999999999999999999985 378999999986 4567899999999999999999887643
No 311
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-35 Score=333.67 Aligned_cols=199 Identities=22% Similarity=0.373 Sum_probs=167.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|. ..++|++|++.+++.+||.|
T Consensus 13 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~~--------~~i~~~~q~~~~~~~~tv~e 83 (530)
T PRK15064 13 AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-PSAGNVSLDPN--------ERLGKLRQDQFAFEEFTVLD 83 (530)
T ss_pred CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCC--------CEEEEEeccCCcCCCCcHHH
Confidence 4579999999999999999999999999999999999987 78899999872 35999999999999999999
Q ss_pred HHHHHHH-c-----------cCCC-C----------------CCHHHHHHHHHHHHHHcCCchhh-cccCCCCCHHHHHH
Q psy10223 119 TLYYAAH-L-----------SIGP-Q----------------VSRYVRNARIRQVLADLALSNVA-RRNISELTPSEHRR 168 (606)
Q Consensus 119 ~l~f~~~-~-----------~~~~-~----------------~~~~~~~~~v~~~l~~lgL~~~~-~~~v~~LSgGerqR 168 (606)
++.++.. . ..+. . ....+.++++.++++.+|+.+.. ++++.+||||||||
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qr 163 (530)
T PRK15064 84 TVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLR 163 (530)
T ss_pred HHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHH
Confidence 9987531 0 0000 0 00012245688899999998644 57899999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE-EEecChh
Q psy10223 169 VVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL-IYAGPTR 247 (606)
Q Consensus 169 vsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~-v~~G~~~ 247 (606)
|+||++|+.+|++|+|||||+|||+.++..+.+.|++ .+.|||+++|+. +.+.++||++++|++|++ ++.|+.+
T Consensus 164 v~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~ 238 (530)
T PRK15064 164 VLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDR-HFLNSVCTHMADLDYGELRVYPGNYD 238 (530)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCH-HHHHhhcceEEEEeCCEEEEecCCHH
Confidence 9999999999999999999999999999999999863 478999999875 578899999999999999 5889888
Q ss_pred HHHH
Q psy10223 248 LMLE 251 (606)
Q Consensus 248 ~~~~ 251 (606)
+..+
T Consensus 239 ~~~~ 242 (530)
T PRK15064 239 EYMT 242 (530)
T ss_pred HHHH
Confidence 7653
No 312
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-36 Score=332.89 Aligned_cols=205 Identities=19% Similarity=0.335 Sum_probs=170.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCC---CCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRT---DLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~---~~~~ 112 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|+. .+++
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~ 339 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE-KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYA 339 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc-CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCccc
Confidence 358999999999999999999999999999999999987 7899999999887531 2356699999985 3788
Q ss_pred CCCHHHHHHHHH-H-ccCCCC-CCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 113 SLTVEQTLYYAA-H-LSIGPQ-VSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 113 ~lTV~e~l~f~~-~-~~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
.+|+.++..+.. . ...... ..+...+++++++++.+++. +..++++++|||||||||+||++++.+|+||+|||||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt 419 (491)
T PRK10982 340 YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPT 419 (491)
T ss_pred CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 899887743221 0 000001 12233456788999999995 5679999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChh
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~ 247 (606)
+|||+.++.++++.|+++++ .|.|+|+++|+. +++.++|||+++|++|+++..++++
T Consensus 420 ~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 420 RGIDVGAKFEIYQLIAELAK-KDKGIIIISSEM-PELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred cccChhHHHHHHHHHHHHHH-CCCEEEEECCCh-HHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999976 489999999975 5788999999999999999877653
No 313
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.6e-35 Score=333.81 Aligned_cols=197 Identities=26% Similarity=0.337 Sum_probs=166.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++|+|+||+|++||+++|+||||||||||||+|+|..+ +++|+|.+++ +..++|++|++.+++.+||.|
T Consensus 19 ~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-p~~G~i~~~~--------~~~i~~v~Q~~~~~~~~tv~e 89 (556)
T PRK11819 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-EFEGEARPAP--------GIKVGYLPQEPQLDPEKTVRE 89 (556)
T ss_pred CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecC--------CCEEEEEecCCCCCCCCcHHH
Confidence 3679999999999999999999999999999999999987 7889999874 246999999999999999999
Q ss_pred HHHHHHHc-c------------CCCCCC--------------------HHHHHHHHHHHHHHcCCchhhcccCCCCCHHH
Q psy10223 119 TLYYAAHL-S------------IGPQVS--------------------RYVRNARIRQVLADLALSNVARRNISELTPSE 165 (606)
Q Consensus 119 ~l~f~~~~-~------------~~~~~~--------------------~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGe 165 (606)
++.++... . ...... ..+..+++.++++.+|+.. .++++++|||||
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~LSgGq 168 (556)
T PRK11819 90 NVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVTKLSGGE 168 (556)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchhhcCHHH
Confidence 99875320 0 000000 0012356788999999964 789999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-Eec
Q psy10223 166 HRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAG 244 (606)
Q Consensus 166 rqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G 244 (606)
||||+||++|+.+|+++||||||+|||+.++..+.+.|+++ +.|+|+++|++ +.+.+.||+|++|++|+++ +.|
T Consensus 169 kqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tviiisHd~-~~~~~~~d~i~~l~~g~i~~~~g 243 (556)
T PRK11819 169 RRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVAVTHDR-YFLDNVAGWILELDRGRGIPWEG 243 (556)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEEEeCCH-HHHHhhcCeEEEEeCCEEEEecC
Confidence 99999999999999999999999999999999999999876 24889988875 5788999999999999986 788
Q ss_pred ChhHHH
Q psy10223 245 PTRLML 250 (606)
Q Consensus 245 ~~~~~~ 250 (606)
+.++..
T Consensus 244 ~~~~~~ 249 (556)
T PRK11819 244 NYSSWL 249 (556)
T ss_pred CHHHHH
Confidence 877653
No 314
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.9e-35 Score=303.88 Aligned_cols=186 Identities=24% Similarity=0.364 Sum_probs=152.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++| .++|++|++.+++. ||+||
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~-p~~G~I~i~g----------~i~yv~q~~~l~~~-tv~en 117 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE-PSEGKIKHSG----------RISFSSQFSWIMPG-TIKEN 117 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECC----------EEEEEeCccccccc-CHHHH
Confidence 469999999999999999999999999999999999987 7899999987 38999999988875 99999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-----------VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
+.+.... .. .++.+.++.+++.+ ..++.++.|||||||||+||++|+.+|++++|||||
T Consensus 118 l~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt 187 (282)
T cd03291 118 IIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (282)
T ss_pred hhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 9874321 11 11223333344332 223446799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-HHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSML-SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L-~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+|||+.++..+.+.+ +.++ .+.|+|+++|++. .+ ..||++++|++|++++.|+++++..
T Consensus 188 ~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 188 GYLDVFTEKEIFESCVCKLM--ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred ccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999865 5553 3689999999864 44 6899999999999999999887653
No 315
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.6e-35 Score=331.91 Aligned_cols=197 Identities=26% Similarity=0.317 Sum_probs=164.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.+++ +..++|++|++.+++.+||.|+
T Consensus 18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-p~~G~i~~~~--------~~~i~~v~Q~~~~~~~~tv~e~ 88 (552)
T TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-EFNGEARPAP--------GIKVGYLPQEPQLDPTKTVREN 88 (552)
T ss_pred CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecC--------CCEEEEEeccCCCCCCCcHHHH
Confidence 579999999999999999999999999999999999987 7889999875 2469999999999999999999
Q ss_pred HHHHHHc-cC-----------CCCCCHH---------------------HHHHHHHHHHHHcCCchhhcccCCCCCHHHH
Q psy10223 120 LYYAAHL-SI-----------GPQVSRY---------------------VRNARIRQVLADLALSNVARRNISELTPSEH 166 (606)
Q Consensus 120 l~f~~~~-~~-----------~~~~~~~---------------------~~~~~v~~~l~~lgL~~~~~~~v~~LSgGer 166 (606)
+.++... +. ....... ....++.++++.+|+.. .+++++.||||||
T Consensus 89 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqk 167 (552)
T TIGR03719 89 VEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVTKLSGGER 167 (552)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchhhcCHHHH
Confidence 9875321 00 0000010 01245677888888864 6889999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-EecC
Q psy10223 167 RRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAGP 245 (606)
Q Consensus 167 qRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G~ 245 (606)
|||+||++|+.+|++++|||||++||+.++..+.+.|+++ +.|+|+++|+. +.+..+||++++|++|+++ +.|+
T Consensus 168 qrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~-~~~~~~~d~v~~l~~g~i~~~~g~ 242 (552)
T TIGR03719 168 RRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDR-YFLDNVAGWILELDRGRGIPWEGN 242 (552)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCH-HHHHhhcCeEEEEECCEEEEecCC
Confidence 9999999999999999999999999999999999999875 24889988865 5788999999999999976 7798
Q ss_pred hhHHHH
Q psy10223 246 TRLMLE 251 (606)
Q Consensus 246 ~~~~~~ 251 (606)
.++..+
T Consensus 243 ~~~~~~ 248 (552)
T TIGR03719 243 YSSWLE 248 (552)
T ss_pred HHHHHH
Confidence 877554
No 316
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3e-35 Score=281.10 Aligned_cols=151 Identities=26% Similarity=0.373 Sum_probs=135.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+++|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|. +.++|++|++.++ ..||.||
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~--------~~i~~~~q~~~~~-~~tv~~n 83 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP-WGSGRIGMPEG--------EDLLFLPQRPYLP-LGTLREQ 83 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCC--------ceEEEECCCCccc-cccHHHH
Confidence 569999999999999999999999999999999999987 78999999863 5799999998765 6799999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+.+. .++.||||||||++||++|+.+|+++++||||+|||+.++..+
T Consensus 84 l~~~---------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l 130 (166)
T cd03223 84 LIYP---------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL 130 (166)
T ss_pred hhcc---------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHH
Confidence 8642 3579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
.+.|+++ ++|+|+++|++. ..+.||++++|++|-
T Consensus 131 ~~~l~~~----~~tiiivsh~~~--~~~~~d~i~~l~~~~ 164 (166)
T cd03223 131 YQLLKEL----GITVISVGHRPS--LWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHh----CCEEEEEeCChh--HHhhCCEEEEEcCCC
Confidence 9999875 579999999863 457999999998764
No 317
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=331.78 Aligned_cols=192 Identities=20% Similarity=0.348 Sum_probs=165.6
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCC--CCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTD--LIPSL 114 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~--~~~~l 114 (606)
++++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|. +.++|++|+.. +++.+
T Consensus 329 ~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-p~~G~i~~~~~--------~~i~~~~q~~~~~~~~~~ 399 (530)
T PRK15064 329 FDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE-PDSGTVKWSEN--------ANIGYYAQDHAYDFENDL 399 (530)
T ss_pred eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCc--------eEEEEEcccccccCCCCC
Confidence 334579999999999999999999999999999999999987 78899999873 46999999864 56789
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||.|++.+... . . ..+++++++++.+++. +..++++++|||||||||+||++|+.+|++++|||||+|||+
T Consensus 400 t~~~~~~~~~~---~---~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~ 471 (530)
T PRK15064 400 TLFDWMSQWRQ---E---G--DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDM 471 (530)
T ss_pred cHHHHHHHhcc---C---C--ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 99999864211 1 1 1235678899999994 678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-EecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G~~~~~~ 250 (606)
.++..+.+.|+++ +.|+|+++|++ +.+.++||++++|++|+++ +.|+.++..
T Consensus 472 ~~~~~l~~~l~~~----~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 472 ESIESLNMALEKY----EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred HHHHHHHHHHHHC----CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 9999999999875 34899999975 5788899999999999998 889887654
No 318
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-35 Score=293.35 Aligned_cols=173 Identities=26% Similarity=0.417 Sum_probs=159.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
..+++||||++++||.++|+|+||||||||-|+|.|+.+ +++|+|.++|+++... .
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~-pt~G~i~f~g~~i~~~--~--------------------- 81 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE-PTSGEILFEGKDITKL--S--------------------- 81 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-CCCceEEEcCcchhhc--c---------------------
Confidence 579999999999999999999999999999999999998 8999999999986421 1
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
+.+..+++.++|+.+|+.. .+++++++||||||||+.|||||+.+|+++++|||||.||.+.+.+
T Consensus 82 --------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaq 147 (268)
T COG4608 82 --------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQ 147 (268)
T ss_pred --------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHH
Confidence 2345678999999999975 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.++|+++.++.|.|.+.++|+. +-+..++||+.||+.|++|+.|+.+++..
T Consensus 148 IlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 148 ILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 99999999999999999999964 57899999999999999999999998854
No 319
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.7e-36 Score=280.91 Aligned_cols=207 Identities=27% Similarity=0.412 Sum_probs=181.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECC-EeCCc----ccccCeEEEEcCCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG-TPMSP----QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G-~~~~~----~~~~~~i~yv~q~~~~~~~l 114 (606)
..+|+|+||++.+||+-+|+|||||||||+|++|+|..+ |..|++.++| .++.. +..|..||--+|.+..|+.+
T Consensus 18 F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-p~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~l 96 (249)
T COG4674 18 FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR-PQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENL 96 (249)
T ss_pred eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC-CCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhc
Confidence 469999999999999999999999999999999999987 7889999999 66643 22466789999999999999
Q ss_pred CHHHHHHHHHHccCCC-----CCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 115 TVEQTLYYAAHLSIGP-----QVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
||+|||..+.+...+- ...+.+.+.+++++|+..||.+..|.....||.||||++.|++.++++|++|++|||++
T Consensus 97 tV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvA 176 (249)
T COG4674 97 TVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVA 176 (249)
T ss_pred cHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccC
Confidence 9999999987542110 01123456789999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+-.+...+..++|+.++. +.+|+++-| +...+.+++|||.||++|.+...|+.+++.
T Consensus 177 GMTd~Et~~taeLl~~la~--~hsilVVEH-DM~Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 177 GMTDAETEKTAELLKSLAG--KHSILVVEH-DMGFVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred CCcHHHHHHHHHHHHHHhc--CceEEEEec-cHHHHHHhhheeEEEeccceeecccHHHhh
Confidence 9999999999999999974 567777765 578999999999999999999999998875
No 320
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.5e-35 Score=281.27 Aligned_cols=205 Identities=25% Similarity=0.374 Sum_probs=175.2
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCccc---ccCeEEEEcCCCC--CC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQL---FQTTCGYVNHRTD--LI 111 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~---~~~~i~yv~q~~~--~~ 111 (606)
...+++|+++|++|..||++.|+|.||||||||+|+|+|... +++|+|.++|.+++... ....++-|+|++. ..
T Consensus 16 ~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~-~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc-cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 345789999999999999999999999999999999999998 89999999999987521 2335778899975 79
Q ss_pred CCCCHHHHHHHHHHccCCCCCCH---HHHHHHHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSR---YVRNARIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
|.||++||+..+......++.+. ...++..++-++.+ ||++..++++.-|||||||-|+++.|.++.|+||+|||
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE 174 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE 174 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc
Confidence 99999999998875422222332 12233344555554 77899999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEe
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYA 243 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~ 243 (606)
-|++|||.++..+++.-.+..++.+.|.++++|+ .+++.++-+|.++|++|+||.+
T Consensus 175 HTAALDPkta~~vm~lT~kiV~~~klTtlMVTHn-m~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 175 HTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHN-MEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hhhcCCcchHHHHHHHHHHHHHhcCCceEEEecc-HHHHHhhCCeEEEEeCCeEEEE
Confidence 9999999999999999999998889999999986 5789999999999999999976
No 321
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.4e-35 Score=360.51 Aligned_cols=201 Identities=20% Similarity=0.374 Sum_probs=168.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC---------------------------------------
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--------------------------------------- 79 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--------------------------------------- 79 (606)
++++|+|+|+++++||.+||+||||||||||+++|.|++++
T Consensus 1180 ~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 (1466)
T PTZ00265 1180 NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFS 1259 (1466)
T ss_pred CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccc
Confidence 35799999999999999999999999999999999999873
Q ss_pred --------------CCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHH
Q psy10223 80 --------------TTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIR 142 (606)
Q Consensus 80 --------------~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~ 142 (606)
+.+|+|++||.++.. +.+|+.++||+|++.+|+ .|++|||.++.. ..+. ++++
T Consensus 1260 ~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~-----~at~----eeI~ 1329 (1466)
T PTZ00265 1260 LTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE-----DATR----EDVK 1329 (1466)
T ss_pred cccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC-----CCCH----HHHH
Confidence 158999999999853 458899999999999996 599999998632 2333 3355
Q ss_pred HHHHHcCCch-------hhcccC----CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q psy10223 143 QVLADLALSN-------VARRNI----SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211 (606)
Q Consensus 143 ~~l~~lgL~~-------~~~~~v----~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g 211 (606)
++++..++.+ -.|+.+ ..||||||||++|||||+++|+||+||||||+||+.+...+.+.|+++.+..+
T Consensus 1330 ~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~ 1409 (1466)
T PTZ00265 1330 RACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKAD 1409 (1466)
T ss_pred HHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCC
Confidence 5555554432 234444 46999999999999999999999999999999999999999999999853357
Q ss_pred cEEEEEecCCcchHHhcCCeEEEEcC----CeEE-EecChhHHHH
Q psy10223 212 RAVLLTMEKPRSDVLPFLDRTAYLCL----GDLI-YAGPTRLMLE 251 (606)
Q Consensus 212 ~tii~t~h~~~~~i~~~~D~v~vL~~----G~~v-~~G~~~~~~~ 251 (606)
+|+|+++|++ +..+.||+|++|++ |+++ +.|+.+++++
T Consensus 1410 ~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1410 KTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred CEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 9999999986 45678999999999 9955 8999998863
No 322
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.2e-34 Score=326.88 Aligned_cols=184 Identities=22% Similarity=0.270 Sum_probs=163.2
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLY 121 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~ 121 (606)
.|+++|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++ ..++|++|+..+.+.+||+|++.
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-p~~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l~ 422 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-PDEGEVDPE----------LKISYKPQYIKPDYDGTVEDLLR 422 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEEe----------eeEEEecccccCCCCCcHHHHHH
Confidence 5999999999999999999999999999999999987 789999885 15899999988889999999998
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q psy10223 122 YAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201 (606)
Q Consensus 122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~ 201 (606)
+.... ... ...++++++.+++.+..++++.+|||||||||+||++|+.+|++++|||||+|||+.++..+.+
T Consensus 423 ~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~ 494 (590)
T PRK13409 423 SITDD-----LGS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAK 494 (590)
T ss_pred HHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 75321 111 2346889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecCh
Q psy10223 202 MLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246 (606)
Q Consensus 202 ~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~ 246 (606)
.|++++++.|+|+|+++|+. +.+..++||+++|+ |++...|..
T Consensus 495 ~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 495 AIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred HHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-Ccceeeeec
Confidence 99999876789999999975 57889999999996 577776653
No 323
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.2e-34 Score=324.46 Aligned_cols=193 Identities=20% Similarity=0.324 Sum_probs=162.2
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCC-CCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRT-DLIPSLT 115 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~-~~~~~lT 115 (606)
++++.+|+|+|++|++||+++|+||||||||||||+|+|+.+ +.+|+|.+++. ..++|++|+. .+++.+|
T Consensus 334 ~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-p~~G~i~~~~~--------~~i~~v~q~~~~~~~~~t 404 (556)
T PRK11819 334 FGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ-PDSGTIKIGET--------VKLAYVDQSRDALDPNKT 404 (556)
T ss_pred ECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCc--------eEEEEEeCchhhcCCCCC
Confidence 344679999999999999999999999999999999999987 78999998541 1599999996 6889999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
|.|++.+...... ... ...+.+++++.+++.+ ..++++++|||||||||+||++|+.+|++++|||||+|||+.
T Consensus 405 v~e~l~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 479 (556)
T PRK11819 405 VWEEISGGLDIIK---VGN--REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVE 479 (556)
T ss_pred HHHHHHhhccccc---ccc--cHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 9999988653211 111 1223567899999974 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC-CeEE-EecChhH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL-GDLI-YAGPTRL 248 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~-G~~v-~~G~~~~ 248 (606)
++..+.+.|+++. + |+|+++|++ +.+.++||++++|++ |+++ +.|+.++
T Consensus 480 ~~~~l~~~l~~~~---~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 480 TLRALEEALLEFP---G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred HHHHHHHHHHhCC---C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 9999999999862 3 788888875 578899999999986 7776 5666544
No 324
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.2e-34 Score=326.13 Aligned_cols=187 Identities=20% Similarity=0.301 Sum_probs=159.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||.++|+||||||||||+|+|+|..+ +.+|+|.+||.++.. ..+|+.++|++|++.+|+. |+
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti 413 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ-PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LL 413 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hh
Confidence 469999999999999999999999999999999999988 789999999999763 3578899999999988865 67
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhccc-----CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN-----ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-----v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
+|| . .. ..++++.++++.+++.+..+.. ...||||||||++||||++++|++++|||||++|
T Consensus 414 ~~n---~------~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~L 480 (547)
T PRK10522 414 GPE---G------KP----ANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQ 480 (547)
T ss_pred ccc---c------Cc----hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 666 0 11 1234577888888887643321 3589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEe
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYA 243 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~ 243 (606)
|+.+...+.+.|.+..++.++|+|+++|++ +..+.+|++++|++|+++..
T Consensus 481 D~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 481 DPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence 999999999999876544578999999986 46788999999999999866
No 325
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.1e-34 Score=295.62 Aligned_cols=189 Identities=22% Similarity=0.320 Sum_probs=160.3
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEE-----------ECCEeCCcc--c-cc--CeEEEE
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII-----------LDGTPMSPQ--L-FQ--TTCGYV 104 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~-----------~~G~~~~~~--~-~~--~~i~yv 104 (606)
.+|+|+| .+++||+++|+||||||||||||+|+|+.+ +++|+|. ++|.++... . .+ ..++|+
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 92 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK-PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK 92 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC-CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence 5999999 599999999999999999999999999988 7899996 778776421 1 11 247899
Q ss_pred cCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 105 NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 105 ~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
+|...+++. ++.+++.+... ....++++.++++.+|+.+..++.++.||||||||++||++|+.+|+++++
T Consensus 93 ~~~~~~~~~-~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illl 163 (255)
T cd03236 93 PQYVDLIPK-AVKGKVGELLK--------KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFF 163 (255)
T ss_pred cchhccCch-HHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 998888884 88888876431 123346678999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEe
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYA 243 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~ 243 (606)
||||+|||+.++..+.+.|+++++ .++|+|+++|++ +.+.++||++++|+ |++.+.
T Consensus 164 DEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~ 219 (255)
T cd03236 164 DEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDL-AVLDYLSDYIHCLY-GEPGAY 219 (255)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCH-HHHHHhCCEEEEEC-CCCCcc
Confidence 999999999999999999999976 478999999975 57788999999995 555543
No 326
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.3e-34 Score=322.90 Aligned_cols=192 Identities=21% Similarity=0.332 Sum_probs=161.5
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCC-CCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRT-DLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~-~~~~~lTV 116 (606)
+++.+|+|+|++|++||+++|+|||||||||||++|+|+.+ +.+|+|.+++. ..++|++|+. .+++.+||
T Consensus 333 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-p~~G~i~~~~~--------~~i~~v~q~~~~~~~~~tv 403 (552)
T TIGR03719 333 GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ-PDSGTIKIGET--------VKLAYVDQSRDALDPNKTV 403 (552)
T ss_pred CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCeEEEECCc--------eEEEEEeCCccccCCCCcH
Confidence 34679999999999999999999999999999999999987 78999998542 1599999986 48889999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
.|++.+..... ..... ..+++++++.+++.+ ..++++..|||||||||+||++|+.+|++++|||||+|||+.+
T Consensus 404 ~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~ 478 (552)
T TIGR03719 404 WEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478 (552)
T ss_pred HHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 99998865321 11111 224567899999974 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC-CeEE-EecChhH
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL-GDLI-YAGPTRL 248 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~-G~~v-~~G~~~~ 248 (606)
+..+.+.|+++. + |+|+++|++ +.+.++||++++|++ |+++ +.|+.++
T Consensus 479 ~~~l~~~l~~~~---~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 479 LRALEEALLEFA---G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred HHHHHHHHHHCC---C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence 999999999872 3 788888875 578899999999987 5776 5566543
No 327
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.3e-34 Score=356.96 Aligned_cols=196 Identities=22% Similarity=0.326 Sum_probs=167.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|++|+|||.+||+||+|||||||+++|.|+.+ +.+|+|.+||.+++. ..+|+++++|+|++.+|+. |+
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~-p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TI 1329 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE-LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TV 1329 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCCceEEECCEecccCCHHHHHhccEEECCCCccccc-cH
Confidence 469999999999999999999999999999999999988 789999999999864 4578999999999999987 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-------hccc----CCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-------ARRN----ISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~----v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+|||.... ..++ +++.++++..++.+. .|+. ...||||||||++|||||+++|+||+||
T Consensus 1330 reNLd~~~------~~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILD 1399 (1622)
T PLN03130 1330 RFNLDPFN------EHND----ADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLD 1399 (1622)
T ss_pred HHHhCcCC------CCCH----HHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99997532 1222 345666666655432 2333 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.+...+.+.|++.. .++|+|+++|... ....||||+||++|+++++|+++++++
T Consensus 1400 EATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~--tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1400 EATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLN--TIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999874 4799999999763 455699999999999999999999874
No 328
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=7.7e-35 Score=308.12 Aligned_cols=203 Identities=24% Similarity=0.399 Sum_probs=171.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+||.+++||.++|+||||||||||.|+|.|..+ +.+|.|++||-+++. +.+-++|||+||+-.+|+. |
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~-p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-T 425 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP-PTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-T 425 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc-cCCCcEEecchhhhcCCHHHhccccCcCcccceecCC-c
Confidence 4689999999999999999999999999999999999987 789999999988753 4577899999999999997 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHH-----HHHHHHHHHHcCCchhhcccC----CCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVR-----NARIRQVLADLALSNVARRNI----SELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~~~v----~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
|.||+.-.. .+.+.+.. ...+.+++- .+.+-.|+.+ ..||||||||+++||||-.+|.+++|||
T Consensus 426 IaeNIaRf~-----~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDE 498 (580)
T COG4618 426 IAENIARFG-----EEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDE 498 (580)
T ss_pred HHHHHHhcc-----ccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecC
Confidence 999984221 12222111 112333332 3444556665 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYF 253 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f 253 (606)
|-++||......+.+.|....+ .|.|+|+++|.| .+...+|||++|++|++-.+|+.+|++...
T Consensus 499 PNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRP--s~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 499 PNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRP--SALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred CCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCH--HHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 9999999999999999999865 588888889987 588999999999999999999999998865
No 329
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.4e-34 Score=324.23 Aligned_cols=188 Identities=19% Similarity=0.311 Sum_probs=158.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||.++|+||||||||||+|+|+|..+ |.+|+|.+||.++.. ..+|+.++|++|++.+|+. |+
T Consensus 355 ~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti 432 (555)
T TIGR01194 355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI-PQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LI 432 (555)
T ss_pred CceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-hh
Confidence 369999999999999999999999999999999999988 789999999998864 3467889999999988865 77
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccC------CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI------SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v------~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
++|+. + ...++++.++++.+++.+..+..+ ..||||||||++||||++.+|++++|||||++
T Consensus 433 ~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~ 500 (555)
T TIGR01194 433 GPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAAD 500 (555)
T ss_pred hcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 77731 1 123456788899999877654433 56999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEe
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYA 243 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~ 243 (606)
||+.+..++.+.+.+..+..++|+|+++|++ +..+.||+|++|++|+++..
T Consensus 501 LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~--~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 501 QDPAFKRFFYEELLPDLKRQGKTIIIISHDD--QYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeccH--HHHHhCCEEEEEECCEEEEe
Confidence 9999999999876532233589999999986 35689999999999999764
No 330
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=8.5e-35 Score=326.30 Aligned_cols=181 Identities=29% Similarity=0.471 Sum_probs=153.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|++++|||.++|+||||||||||+|+|+|+.+ +.+|+|.+||.++++ +.+|+.++||+|++.+|+. |+
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti 412 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD-PTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TI 412 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CH
Confidence 479999999999999999999999999999999999998 789999999998753 4578899999999999875 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-------c----ccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-------R----RNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~----~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++.. ..++ +++.++++..++.+.. | +....||||||||++|||||+++|++++||
T Consensus 413 ~~Ni~~~~~-----~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililD 483 (529)
T TIGR02857 413 AENIRLARP-----DASD----AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLD 483 (529)
T ss_pred HHHHhccCC-----CCCH----HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999987532 1222 3455666666654322 2 334579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL 235 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL 235 (606)
|||++||+.+...+.+.|+++. .++|+|+++|++ +..+.||+|++|
T Consensus 484 E~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~--~~~~~~d~i~~l 529 (529)
T TIGR02857 484 EPTAHLDAETEALVTEALRALA--QGRTVLLVTHRL--ALAERADRIVVL 529 (529)
T ss_pred CcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCH--HHHHhCCEEEeC
Confidence 9999999999999999999875 478999999986 345789999875
No 331
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.7e-35 Score=358.06 Aligned_cols=196 Identities=19% Similarity=0.296 Sum_probs=167.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|++|+|||.+||+||||||||||+++|.|+.+ +.+|+|.+||.+++. ..+|++++||+|++.+|+. |+
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~-p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TI 1326 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE-LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TV 1326 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cH
Confidence 579999999999999999999999999999999999988 789999999999854 4578999999999999986 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-------cc----cCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-------RR----NISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~----~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+|||.... ..+. +++.++++..++.+.. |+ ....||||||||++|||||+++|+||+||
T Consensus 1327 r~NL~~~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILD 1396 (1495)
T PLN03232 1327 RFNIDPFS------EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLD 1396 (1495)
T ss_pred HHHcCCCC------CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99997531 2232 3455666666554322 33 33579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.+...+.+.|++.. .++|+|+++|+. +....||||++|++|+++++|+++++++
T Consensus 1397 EATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl--~ti~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1397 EATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRL--NTIIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred CCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999874 479999999986 3455699999999999999999999864
No 332
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4e-34 Score=294.88 Aligned_cols=211 Identities=26% Similarity=0.363 Sum_probs=186.4
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC----CeeEEEECCEeCC---ccc---cc-CeEEEEcC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIILDGTPMS---PQL---FQ-TTCGYVNH 106 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~----~~G~I~~~G~~~~---~~~---~~-~~i~yv~q 106 (606)
+...++++|||++++||.+||+|.||||||-..+.|.++++.+ .+|+|.|+|.++- +.. .| .+|++++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 4578999999999999999999999999999999999987632 3699999999863 222 33 37999999
Q ss_pred CCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch---hhcccCCCCCHHHHHHHHHHHHHhhCCCE
Q psy10223 107 RTD--LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN---VARRNISELTPSEHRRVVIGTQLVKDPVL 181 (606)
Q Consensus 107 ~~~--~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSgGerqRvsIa~aL~~~p~l 181 (606)
++. +.|-.|+...+.-..+++ +++++.+.++++.++|+.+|+.+ ..+.++++|||||||||.||.||+.+|++
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~l 178 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDL 178 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCe
Confidence 984 888899999888877764 35778888899999999999964 56889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 182 LLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 182 lllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||.||||++||...+.+|+++|+++.++.|..+++++|+. .-+-+++|||+||.+|++++.|+++++..
T Consensus 179 LIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE~~~t~~lF~ 247 (534)
T COG4172 179 LIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVETGTTETLFA 247 (534)
T ss_pred EeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEeecCcHHHHhh
Confidence 9999999999999999999999999999999999999964 57889999999999999999999988753
No 333
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.7e-34 Score=323.84 Aligned_cols=169 Identities=25% Similarity=0.423 Sum_probs=144.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+++|+|+|+++++||.++|+||||||||||+|+|+|..+ +.+|+|.+||.++.+ +.+|+.++||+|++.+|+. |++
T Consensus 348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~ 425 (529)
T TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD-PLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVR 425 (529)
T ss_pred CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHH
Confidence 469999999999999999999999999999999999998 789999999988753 4578899999999999976 999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-------hcccC----CCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-------ARRNI----SELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v----~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
||+.++.. ..++ +++.++++..++.+. .|+.+ ..||||||||++|||||+++|++++|||
T Consensus 426 eNI~~g~~-----~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE 496 (529)
T TIGR02868 426 DNLRLGRP-----DATD----EELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDE 496 (529)
T ss_pred HHHhccCC-----CCCH----HHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99988531 2222 446667777666543 24433 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
||++||+.+...+.+.|+++. .++|+|+++|++
T Consensus 497 ~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 497 PTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred CcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 999999999999999999864 478999999963
No 334
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-33 Score=323.25 Aligned_cols=193 Identities=22% Similarity=0.327 Sum_probs=163.7
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCC--CCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRT--DLIPS 113 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~--~~~~~ 113 (606)
.++++.+|+|+|++|++||+++|+||||||||||||+|+|..+ +++|+|.+++. ..++|++|+. .+.+.
T Consensus 321 ~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~--------~~igy~~Q~~~~~l~~~ 391 (638)
T PRK10636 321 GYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA-PVSGEIGLAKG--------IKLGYFAQHQLEFLRAD 391 (638)
T ss_pred EeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEECCC--------EEEEEecCcchhhCCcc
Confidence 3345679999999999999999999999999999999999987 78999998641 2589999974 35566
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.|+.+++.- . . .....++++++|+.+++. +..+++++.|||||||||+||++|+.+|++|+|||||+|||
T Consensus 392 ~~~~~~~~~---~--~----~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD 462 (638)
T PRK10636 392 ESPLQHLAR---L--A----PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462 (638)
T ss_pred chHHHHHHH---h--C----chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 788776531 1 1 112345688999999996 47899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-EecChhHHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAGPTRLMLE 251 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G~~~~~~~ 251 (606)
+.++..+.+.|+++ .| |||+++|+. ..+.++||++++|++|+++ +.|+.++..+
T Consensus 463 ~~~~~~l~~~L~~~---~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 463 LDMRQALTEALIDF---EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred HHHHHHHHHHHHHc---CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999886 24 899998864 5788999999999999997 8899887644
No 335
>KOG0059|consensus
Probab=100.00 E-value=3.1e-34 Score=337.18 Aligned_cols=206 Identities=25% Similarity=0.453 Sum_probs=191.8
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+++++|+.|++||+.+++|+|||||||++|+|.|..+ +++|++.++|.++.. ...++.+||+||+|.+++.+|.+
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~-~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~r 658 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK-PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGR 658 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc-CCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHH
Confidence 9999999999999999999999999999999999988 889999999998753 23678899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
|+|.+.++++ ++++.+.++.++.+++.++|.+.+|+.++.+|||+|||+++|.|++.+|++++|||||+|+||.+++
T Consensus 659 EhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr 735 (885)
T KOG0059|consen 659 EHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARR 735 (885)
T ss_pred HHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHH
Confidence 9999999976 4566667778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYF 253 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f 253 (606)
.++++++++.+ +|+.+|+|+|. .+|...+|||+.+|.+|++...|++++++..|
T Consensus 736 ~lW~ii~~~~k-~g~aiiLTSHs-MeE~EaLCtR~aImv~G~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 736 HLWDIIARLRK-NGKAIILTSHS-MEEAEALCTRTAIMVIGQLRCIGSPQELKSRY 789 (885)
T ss_pred HHHHHHHHHHh-cCCEEEEEcCC-HHHHHHHhhhhheeecCeeEEecChHHHHhhc
Confidence 99999999976 46699999885 78999999999999999999999999999876
No 336
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.4e-33 Score=271.50 Aligned_cols=157 Identities=20% Similarity=0.269 Sum_probs=133.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
.+++|+|+|+++++||+++|+||||||||||||+|.+ .+|++.++|.... ..+..++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~--~~~~~~~~~~q------------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPK--FSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCcccc--cccccEEEEhH------------
Confidence 3579999999999999999999999999999999853 4699999876321 12345778766
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCCCHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKD--PVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~--p~llllDEPTsgLD~~~ 195 (606)
.++++.+++.. ..+++++.||||||||++||++|+.+ |+++++||||+|||+.+
T Consensus 68 -----------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 -----------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred -----------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 24677888876 47899999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
+..+.+.|+++++ .|+|+|+++|++. . .+.+|++++|.+|+.
T Consensus 125 ~~~l~~~l~~~~~-~g~tvIivSH~~~-~-~~~~d~i~~l~~g~~ 166 (176)
T cd03238 125 INQLLEVIKGLID-LGNTVILIEHNLD-V-LSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHHHh-CCCEEEEEeCCHH-H-HHhCCEEEEECCCCC
Confidence 9999999999875 6899999999864 4 478999999976543
No 337
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=6.3e-34 Score=348.06 Aligned_cols=195 Identities=21% Similarity=0.414 Sum_probs=159.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEE-CCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL-DGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~-~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
+++|+|+|+++++||+++|+||||||||||+++|+|+++ |.+|+|.+ +|.++.. ..+|+.++||+|++.+|+. |
T Consensus 398 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-T 475 (1466)
T PTZ00265 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD-PTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-S 475 (1466)
T ss_pred CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc-CCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-c
Confidence 479999999999999999999999999999999999998 78999999 5676642 3467889999999999985 9
Q ss_pred HHHHHHHHHHccC----------CC-----------------------------CC---------CHHHHHHHHHHHHHH
Q psy10223 116 VEQTLYYAAHLSI----------GP-----------------------------QV---------SRYVRNARIRQVLAD 147 (606)
Q Consensus 116 V~e~l~f~~~~~~----------~~-----------------------------~~---------~~~~~~~~v~~~l~~ 147 (606)
|+||+.++..... +. .. ......+++.++++.
T Consensus 476 I~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~ 555 (1466)
T PTZ00265 476 IKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKK 555 (1466)
T ss_pred HHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHH
Confidence 9999998631000 00 00 000123457777777
Q ss_pred cCCchhh-----------cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q psy10223 148 LALSNVA-----------RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216 (606)
Q Consensus 148 lgL~~~~-----------~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~ 216 (606)
+++.+.. ++....||||||||++|||||+++|+||+|||||++||+.++..+.+.|+++.++.|+|+|+
T Consensus 556 ~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIi 635 (1466)
T PTZ00265 556 VLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITII 635 (1466)
T ss_pred hCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 7775542 34567899999999999999999999999999999999999999999999987545899999
Q ss_pred EecCCcchHHhcCCeEEEEcCC
Q psy10223 217 TMEKPRSDVLPFLDRTAYLCLG 238 (606)
Q Consensus 217 t~h~~~~~i~~~~D~v~vL~~G 238 (606)
++|++. . .+.||+|++|++|
T Consensus 636 IsHrls-~-i~~aD~Iivl~~g 655 (1466)
T PTZ00265 636 IAHRLS-T-IRYANTIFVLSNR 655 (1466)
T ss_pred EeCCHH-H-HHhCCEEEEEeCC
Confidence 999864 3 4789999999986
No 338
>KOG0055|consensus
Probab=100.00 E-value=2.8e-34 Score=332.07 Aligned_cols=205 Identities=21% Similarity=0.383 Sum_probs=172.2
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~ 112 (606)
..++.+||+|+|+++++|+-+||+|||||||||...+|-..++ |+.|.|.+||.+++. +.+|++++.|.|+|.||.
T Consensus 999 sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd-p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~ 1077 (1228)
T KOG0055|consen 999 TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD-PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN 1077 (1228)
T ss_pred CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc
Confidence 4456789999999999999999999999999999999999888 789999999999864 458999999999999997
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH-HH--cCCchhhcccC----CCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVL-AD--LALSNVARRNI----SELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l-~~--lgL~~~~~~~v----~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
. |++||+.++.. ..+..+..+..+.+- .. .+|.+-.|+.+ .+||||||||++||||+++||+|||||
T Consensus 1078 ~-TIrENI~YG~~-----~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLD 1151 (1228)
T KOG0055|consen 1078 G-TIRENIAYGSE-----EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLD 1151 (1228)
T ss_pred c-cHHHHHhccCC-----CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeee
Confidence 5 99999999821 244433322221111 11 14555556665 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|.||+||+++.+.+-+.|.+.. .|+|.|++.|.. ...+.||.|+|+++|++++.|+-+++++
T Consensus 1152 EATSALDseSErvVQeALd~a~--~gRT~IvIAHRL--STIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1152 EATSALDSESERVVQEALDRAM--EGRTTIVIAHRL--STIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred ccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecch--hhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 9999999999999999999974 478888888975 4678899999999999999999999876
No 339
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.6e-34 Score=353.10 Aligned_cols=196 Identities=21% Similarity=0.310 Sum_probs=167.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
.++|+|+|++|+|||.+||+||+|||||||+++|.|+.+ +.+|+|.+||.+++. ..+|+++++|+|++.+|+. |+
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~-~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TI 1376 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE-SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SL 1376 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc-CCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cH
Confidence 469999999999999999999999999999999999987 788999999999864 4578999999999999987 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-------hcccC----CCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-------ARRNI----SELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v----~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+|||.... ..++ +++.++++..++.+. .|+.+ ..||||||||++|||||+++|+||+||
T Consensus 1377 r~NLdp~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLD 1446 (1522)
T TIGR00957 1377 RMNLDPFS------QYSD----EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLD 1446 (1522)
T ss_pred HHHcCccc------CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99996211 1233 345566666655432 34444 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.+...+.+.|++.. .++|+|+++|+. +....+|||++|++|+++++|+++++++
T Consensus 1447 EaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl--~ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1447 EATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRL--NTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred CCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999864 478999999986 4566699999999999999999999875
No 340
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7.3e-34 Score=349.87 Aligned_cols=207 Identities=21% Similarity=0.321 Sum_probs=173.6
Q ss_pred eeeeeecccc--ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEE
Q psy10223 29 CFQRVFGNIQ--TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGY 103 (606)
Q Consensus 29 ~~~~~~~~~~--~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~y 103 (606)
.|+++.-.+. ..++|+||||+|++||.+||+|++|||||||+++|.|+.+ +.+|+|.+||.++.. +.+|+.++|
T Consensus 1310 ~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~-p~~G~I~IDG~di~~i~l~~LR~~I~i 1388 (1560)
T PTZ00243 1310 VFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE-VCGGEIRVNGREIGAYGLRELRRQFSM 1388 (1560)
T ss_pred EEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEcccCCHHHHHhcceE
Confidence 3555433332 2459999999999999999999999999999999999998 788999999999864 458899999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-------hcccC----CCCCHHHHHHHHHH
Q psy10223 104 VNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-------ARRNI----SELTPSEHRRVVIG 172 (606)
Q Consensus 104 v~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v----~~LSgGerqRvsIa 172 (606)
|||++.+|+. |++|||.... ..+. +++.++++..++.+. .|+.+ ..||||||||++||
T Consensus 1389 VpQdp~LF~g-TIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLA 1457 (1560)
T PTZ00243 1389 IPQDPVLFDG-TVRQNVDPFL------EASS----AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMA 1457 (1560)
T ss_pred ECCCCccccc-cHHHHhCccc------CCCH----HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHH
Confidence 9999999986 9999995321 2232 457777777777543 24444 46999999999999
Q ss_pred HHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 173 TQLVKD-PVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 173 ~aL~~~-p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+++ |+||+|||||++||+.+...+.+.|++.. .++|+|+++|+. +....||||++|++|+++++|+++++++
T Consensus 1458 RALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl--~ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1458 RALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRL--HTVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred HHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999996 89999999999999999999999999864 478999999976 4667899999999999999999999864
No 341
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2e-33 Score=321.15 Aligned_cols=195 Identities=27% Similarity=0.373 Sum_probs=163.4
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCC-CCCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRT-DLIPSL 114 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~-~~~~~l 114 (606)
.++++++|+|+|++|++||+++|+||||||||||||+|+|..+ +++|+|.+ |.+ -.++|++|+. .+++.+
T Consensus 328 ~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-p~~G~i~~-~~~-------~~i~y~~q~~~~l~~~~ 398 (635)
T PRK11147 328 QIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ-ADSGRIHC-GTK-------LEVAYFDQHRAELDPEK 398 (635)
T ss_pred EECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEE-CCC-------cEEEEEeCcccccCCCC
Confidence 3345679999999999999999999999999999999999987 78999998 432 2599999975 588999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||.|++.+..... .... ...++.++++.+++. +..+++++.|||||||||+||++|+.+|++|||||||+|||+
T Consensus 399 tv~e~l~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~ 473 (635)
T PRK11147 399 TVMDNLAEGKQEV---MVNG--RPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV 473 (635)
T ss_pred CHHHHHHhhcccc---cccc--hHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 9999998754210 1111 234678899999996 568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc-CCeEE-EecChhHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC-LGDLI-YAGPTRLM 249 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~-~G~~v-~~G~~~~~ 249 (606)
.++..+.+.|+++ +.|||+++|+. ..+.++||++++|+ +|+++ |.|+-++-
T Consensus 474 ~~~~~l~~~l~~~----~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 474 ETLELLEELLDSY----QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHHHHHHHhC----CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 9999999999875 34899988874 57889999999998 89976 45665554
No 342
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.2e-33 Score=270.38 Aligned_cols=150 Identities=19% Similarity=0.287 Sum_probs=130.6
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+++.+++++ +++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.+ ++|++|+..
T Consensus 11 ~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~---------i~~~~q~~~-------- 71 (177)
T cd03222 11 GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGIT---------PVYKPQYID-------- 71 (177)
T ss_pred CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEE---------EEEEcccCC--------
Confidence 346789885 8999999999999999999999999999987 789999999853 678877532
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 72 -------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 72 -------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEe--cChhHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYA--GPTRLML 250 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~--G~~~~~~ 250 (606)
.+.+.|++++++.+.|+|+++|++ +.+.++||++++|+++-.++. |++...+
T Consensus 109 ~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 109 NAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 999999998765458999999975 577889999999998876655 6555433
No 343
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.3e-33 Score=272.24 Aligned_cols=205 Identities=19% Similarity=0.328 Sum_probs=183.0
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCH
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV 116 (606)
....++|+||||++++||.++|+|+||||||||||+|+|.++ |++|+|.++|+-... +- -.-.+.|.+|.
T Consensus 37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~-Pt~G~v~v~G~v~~l--i~-------lg~Gf~pelTG 106 (249)
T COG1134 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK-PTSGKVKVTGKVAPL--IE-------LGAGFDPELTG 106 (249)
T ss_pred cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC-CCCceEEEcceEehh--hh-------cccCCCcccch
Confidence 456789999999999999999999999999999999999998 899999999864321 11 11235678999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.+-..+ .++++++.+++++++++.-.|.+..|.+++.+|.||+-|++.|.|...+|++|++||-.+-.|+.-+
T Consensus 107 reNi~l~~~~---~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~ 183 (249)
T COG1134 107 RENIYLRGLI---LGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQ 183 (249)
T ss_pred HHHHHHHHHH---hCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHH
Confidence 9999998764 3578889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHHHc
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSI 256 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~~~ 256 (606)
.+-.+.++++.++ ++|+|+++|+. +.+.++|||+++|++|++.+.|.++++.++++..
T Consensus 184 ~K~~~rl~e~~~~-~~tiv~VSHd~-~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 184 EKCLERLNELVEK-NKTIVLVSHDL-GAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred HHHHHHHHHHHHc-CCEEEEEECCH-HHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHh
Confidence 9999999999764 68999999975 5899999999999999999999999999987653
No 344
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=4.7e-33 Score=259.76 Aligned_cols=132 Identities=32% Similarity=0.495 Sum_probs=122.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
.++|+++|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|. ..++|++|
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~--------~~i~~~~~------------- 70 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGST--------VKIGYFEQ------------- 70 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCe--------EEEEEEcc-------------
Confidence 469999999999999999999999999999999999987 78999999984 46899988
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
||+|||||++||++|+.+|+++++||||+|||+.++..+
T Consensus 71 -----------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l 109 (144)
T cd03221 71 -----------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL 109 (144)
T ss_pred -----------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
.+.|+++ ++|+++++|++ +++.+++|++++|++|+
T Consensus 110 ~~~l~~~----~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 110 EEALKEY----PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHc----CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 9999876 36899998875 57888999999999985
No 345
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=256.01 Aligned_cols=180 Identities=22% Similarity=0.321 Sum_probs=160.0
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC--CCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~l 114 (606)
+...+|-++|++|.+||++-|||||||||||||..+.|.+.+ ..+|++++|+++++. ...++++|.++||+.+||++
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 345789999999999999999999999999999999998875 347999999998864 34578999999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
+|.+||.|+.. ..+....+++.+...|++.||+...++.+.+||||||-||++-|+|+..|+.++||||+|.||.+
T Consensus 93 sVg~Nl~fAlp----~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~A 168 (213)
T COG4136 93 SVGQNLLFALP----ATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168 (213)
T ss_pred ccccceEEecC----cccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHH
Confidence 99999999863 34444566677889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
-+.++.+..-.-.+..|..++.++|+.
T Consensus 169 LR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 169 LRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 999999988877777788888888853
No 346
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.4e-33 Score=344.91 Aligned_cols=196 Identities=24% Similarity=0.362 Sum_probs=168.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
.+++|+|+|++|++||.+||+|++|||||||+++|.|+.+ .+|+|.+||.+++. ..+|++++|+||++.+|+. |
T Consensus 1231 ~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-T 1307 (1490)
T TIGR01271 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-T 1307 (1490)
T ss_pred CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-C
Confidence 3679999999999999999999999999999999999975 57999999999864 4578999999999999987 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-------cccC----CCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-------RRNI----SELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~v----~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
++|||.... ..+ ++++.++++..++.+.. |+.+ ..||||||||++|||||+++|+||+|
T Consensus 1308 IR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlL 1377 (1490)
T TIGR01271 1308 FRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377 (1490)
T ss_pred HHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 999995421 122 34577788888775432 3333 36999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||++||+.+...+.+.|++.. .++|+|+++|.+ +....||||++|++|+++.+|+++++++
T Consensus 1378 DEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl--~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1378 DEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRV--EALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred eCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCH--HHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999864 479999999976 3556699999999999999999998864
No 347
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-33 Score=265.25 Aligned_cols=179 Identities=24% Similarity=0.425 Sum_probs=160.1
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~l 114 (606)
.+.+.++.++||++.+||++-|.||||||||||||+|+|+.+ |.+|+|.++|.+++. +.+++.+-|+...+.+-+.|
T Consensus 12 R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eL 90 (209)
T COG4133 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-PDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTEL 90 (209)
T ss_pred cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC-CCCCeEEecCCCCccchhhHHHHHHHhhccccccchh
Confidence 345689999999999999999999999999999999999998 889999999988764 23567788999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.|||.|....... .....+.++++.+||....|.+++.||-||||||+|||-.++.+++.|||||+++||..
T Consensus 91 Ta~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~ 164 (209)
T COG4133 91 TALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE 164 (209)
T ss_pred hHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHH
Confidence 999999998775321 12356889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcc
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRS 223 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~ 223 (606)
....+-.++...++ .|..||.|+|||..
T Consensus 165 g~a~l~~l~~~H~~-~GGiVllttHq~l~ 192 (209)
T COG4133 165 GVALLTALMAAHAA-QGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEecCCccC
Confidence 99999999999886 47789999999864
No 348
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.5e-32 Score=315.48 Aligned_cols=192 Identities=18% Similarity=0.312 Sum_probs=159.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.+++ +..++|++|+. .+.+++.++
T Consensus 522 ~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~-p~~G~I~~~~--------~~~igyv~Q~~--~~~l~~~~~ 590 (718)
T PLN03073 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ-PSSGTVFRSA--------KVRMAVFSQHH--VDGLDLSSN 590 (718)
T ss_pred CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCceEEECC--------ceeEEEEeccc--cccCCcchh
Confidence 469999999999999999999999999999999999987 7889999865 24699999975 345667666
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
.........+ ... .++++++|+.+|+.+ ..+++++.|||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus 591 ~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~ 665 (718)
T PLN03073 591 PLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEA 665 (718)
T ss_pred HHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 4432211111 111 356788999999984 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-EecChhHHHHH
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAGPTRLMLEY 252 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G~~~~~~~~ 252 (606)
+.+.|++. .+ |+|+++|++ ..+..+||++++|++|+++ +.|+.++..++
T Consensus 666 l~~~L~~~---~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 666 LIQGLVLF---QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred HHHHHHHc---CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHHHH
Confidence 98888764 24 899999875 5788899999999999998 78887765443
No 349
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.1e-32 Score=257.55 Aligned_cols=209 Identities=22% Similarity=0.369 Sum_probs=186.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc--ccc-CeEEEEcCCCC--CCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ--LFQ-TTCGYVNHRTD--LIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~--~~~-~~i~yv~q~~~--~~~~ 113 (606)
...+++.|||++++|+-+||+|.||||||||.|+|+|..+ |++|+|++||+++.-. .+| +.|-+++||++ +.|.
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~-PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPR 103 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPR 103 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC-CCCceEEECCccccccchHhhhhheeeeecCCccccChh
Confidence 3568999999999999999999999999999999999998 8999999999987532 233 56889999975 7899
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL-SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
+.+.+-|....++. .........+++.+.|+.+|| .+.+|-+++.||-||||||++||||+.+|++++.||...+||
T Consensus 104 l~iGqiLd~PL~l~--T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD 181 (267)
T COG4167 104 LRIGQILDFPLRLN--TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLD 181 (267)
T ss_pred hhhhhHhcchhhhc--ccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhcc
Confidence 99999999887753 456677788899999999998 457888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
...+-++.+++.++.++.|.+-|.++.|. .-+.++.|+|+||++|++|+.|.+.++..
T Consensus 182 ~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~t~~v~a 239 (267)
T COG4167 182 MSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGSTADVLA 239 (267)
T ss_pred HHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecCChhhhhc
Confidence 99999999999999999999999887664 57889999999999999999999998753
No 350
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-33 Score=315.71 Aligned_cols=198 Identities=21% Similarity=0.336 Sum_probs=156.5
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCH
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++.+.+|+|+||+|++||+++|+||||||||||||+|+|..+ +++|+|.++|. ..++|++|+.... ..|+
T Consensus 11 ~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~-pd~G~I~~~~~--------~~i~~~~q~~~~~-~~~~ 80 (638)
T PRK10636 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS-ADGGSYTFPGN--------WQLAWVNQETPAL-PQPA 80 (638)
T ss_pred eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCC--------CEEEEEecCCCCC-CCCH
Confidence 344679999999999999999999999999999999999887 78999999874 1378888864333 2455
Q ss_pred HHHHHHHH-----------------------HccC-CCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHH
Q psy10223 117 EQTLYYAA-----------------------HLSI-GPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVI 171 (606)
Q Consensus 117 ~e~l~f~~-----------------------~~~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsI 171 (606)
.+.+.-.. .+.. .......+...+++++++.+|+. +..++++..|||||||||+|
T Consensus 81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~L 160 (638)
T PRK10636 81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL 160 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHH
Confidence 54432110 0000 00000112345788999999997 57899999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-EecChhHH
Q psy10223 172 GTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAGPTRLM 249 (606)
Q Consensus 172 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G~~~~~ 249 (606)
|++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||+++|+. ..+.++||++++|++|+++ |.|+.+..
T Consensus 161 A~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 161 AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDR-DFLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred HHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCH-HHHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 99999999999999999999999999999998764 46899988864 5788999999999999986 66776544
No 351
>KOG0056|consensus
Probab=100.00 E-value=2.5e-33 Score=293.45 Aligned_cols=212 Identities=25% Similarity=0.383 Sum_probs=173.1
Q ss_pred eeeee-eccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEE
Q psy10223 29 CFQRV-FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYV 104 (606)
Q Consensus 29 ~~~~~-~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv 104 (606)
.|+++ |+....+++|+||||++.||+.+|++||||+||||++|+|....+ ..+|.|.+||+++.. ..+|+.||.|
T Consensus 539 ~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd-v~sGsI~iDgqdIrnvt~~SLRs~IGVV 617 (790)
T KOG0056|consen 539 EFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD-VNSGSITIDGQDIRNVTQSSLRSSIGVV 617 (790)
T ss_pred EEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh-ccCceEEEcCchHHHHHHHHHHHhcCcc
Confidence 34443 455567899999999999999999999999999999999998876 678999999999864 4578999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHH--HHH-HHcCCchhhcccCC----CCCHHHHHHHHHHHHHhh
Q psy10223 105 NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIR--QVL-ADLALSNVARRNIS----ELTPSEHRRVVIGTQLVK 177 (606)
Q Consensus 105 ~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~--~~l-~~lgL~~~~~~~v~----~LSgGerqRvsIa~aL~~ 177 (606)
|||..+|.+ |+..|++++-. ..+.++..+.++ ++= +.++..+-.+++++ .|||||||||+|||++++
T Consensus 618 PQDtvLFNd-TI~yNIryak~-----~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK 691 (790)
T KOG0056|consen 618 PQDTVLFND-TILYNIRYAKP-----SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILK 691 (790)
T ss_pred cCcceeecc-eeeeheeecCC-----CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhc
Confidence 999999976 89999988632 223333222222 222 33566666667664 599999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+|.+++|||.||+||..+.+.+...|.+++. ++|.|++.|..+ ..-.+|.++++++|++++.|.-+|++.
T Consensus 692 ~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLS--TivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 692 APSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLS--TIVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred CCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeeh--heecccEEEEEeCCeEeecCcHHHHHh
Confidence 9999999999999999999999999999985 567777778643 455699999999999999999998865
No 352
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.9e-32 Score=311.64 Aligned_cols=196 Identities=24% Similarity=0.345 Sum_probs=153.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
.+.+|+|+||++++||+++|+||||||||||||+|+|..+ +++|+|.++|.. .++|++|.+......+|.+
T Consensus 15 ~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~-p~~G~I~~~~~~--------~~~~l~q~~~~~~~~~v~~ 85 (635)
T PRK11147 15 DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL-LDDGRIIYEQDL--------IVARLQQDPPRNVEGTVYD 85 (635)
T ss_pred CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCeEEEeCCCC--------EEEEeccCCCCCCCCCHHH
Confidence 3579999999999999999999999999999999999987 788999997631 2566766543333345655
Q ss_pred HHHHH------------------------------HHccC-CCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHH
Q psy10223 119 TLYYA------------------------------AHLSI-GPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHR 167 (606)
Q Consensus 119 ~l~f~------------------------------~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerq 167 (606)
++..+ ..+.. .......+...+++++++.+|+. .++++++|||||||
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekq 163 (635)
T PRK11147 86 FVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLR 163 (635)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHH
Confidence 43211 00000 00000112345788999999997 38899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-EecCh
Q psy10223 168 RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAGPT 246 (606)
Q Consensus 168 RvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G~~ 246 (606)
||+||++|+.+|+||||||||+|||+.++..+.+.|+++ +.|||+++|+. ..+.++||+|++|++|+++ +.|+.
T Consensus 164 Rv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~ 238 (635)
T PRK11147 164 KAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDR-SFIRNMATRIVDLDRGKLVSYPGNY 238 (635)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCH-HHHHHhcCeEEEEECCEEEEecCCH
Confidence 999999999999999999999999999999999999876 24888888864 5788999999999999997 56877
Q ss_pred hHHH
Q psy10223 247 RLML 250 (606)
Q Consensus 247 ~~~~ 250 (606)
++..
T Consensus 239 ~~~~ 242 (635)
T PRK11147 239 DQYL 242 (635)
T ss_pred HHHH
Confidence 6543
No 353
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.5e-32 Score=309.84 Aligned_cols=182 Identities=24% Similarity=0.329 Sum_probs=155.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEE-----------ECCEeCCcc-----cccCeEEE
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII-----------LDGTPMSPQ-----LFQTTCGY 103 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~-----------~~G~~~~~~-----~~~~~i~y 103 (606)
..+|++++ .+++||+++|+||||||||||||+|+|..+ |.+|+|. ++|.++... ..+..+++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 164 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI-PNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVH 164 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceee
Confidence 46999999 999999999999999999999999999987 7889997 899876421 11234666
Q ss_pred EcCCCCCCCCC---CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCC
Q psy10223 104 VNHRTDLIPSL---TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPV 180 (606)
Q Consensus 104 v~q~~~~~~~l---TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~ 180 (606)
.+|.....|.+ ||+|++... +..++++++++.++|.+..++.+++|||||||||+||++|+.+|+
T Consensus 165 ~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ 232 (590)
T PRK13409 165 KPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDAD 232 (590)
T ss_pred cccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 66655444433 999988631 123568899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCC
Q psy10223 181 LLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLG 238 (606)
Q Consensus 181 llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G 238 (606)
+++|||||++||+.++..+.+.|+++++ |+|+|+++|+. +.+..++|+|++|++|
T Consensus 233 lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 233 FYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999975 88999999975 5788999999999874
No 354
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.3e-32 Score=313.07 Aligned_cols=181 Identities=17% Similarity=0.288 Sum_probs=150.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.+++ ++.++|++|++.+++. |++|
T Consensus 464 ~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-~~~G~i~~~~--------~~~i~~v~Q~~~l~~~-tv~e 533 (659)
T TIGR00954 464 GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP-VYGGRLTKPA--------KGKLFYVPQRPYMTLG-TLRD 533 (659)
T ss_pred CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEeecC--------CCcEEEECCCCCCCCc-CHHH
Confidence 3579999999999999999999999999999999999987 7789998753 4679999999988887 9999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhccc---------CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN---------ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~---------v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
|+.++....... .....++++.++++.+++.+..+++ .+.||||||||++|||||+++|++++|||||+
T Consensus 534 ni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts 611 (659)
T TIGR00954 534 QIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTS 611 (659)
T ss_pred HHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 998754211000 0001234577889999998766553 36899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
|||+.+...+.+.+++ .|+|+|+++|++. ..+.+|++++|+.
T Consensus 612 ~LD~~~~~~l~~~l~~----~~~tvI~isH~~~--~~~~~d~il~l~~ 653 (659)
T TIGR00954 612 AVSVDVEGYMYRLCRE----FGITLFSVSHRKS--LWKYHEYLLYMDG 653 (659)
T ss_pred CCCHHHHHHHHHHHHH----cCCEEEEEeCchH--HHHhCCEEEEEeC
Confidence 9999999999998865 3789999999864 4688999999963
No 355
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-32 Score=255.20 Aligned_cols=144 Identities=34% Similarity=0.560 Sum_probs=130.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+|+++|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|
T Consensus 11 ~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q--------- 80 (157)
T cd00267 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAKLPLEELRRRIGYVPQ--------- 80 (157)
T ss_pred CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccCCHHHHHhceEEEee---------
Confidence 3479999999999999999999999999999999999987 788999999987643 234567899888
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|||||+||++||++++.+|+++++||||+|||..+
T Consensus 81 ---------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~ 115 (157)
T cd00267 81 ---------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPAS 115 (157)
T ss_pred ---------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
+..+.+.|+++.+. ++|+++++|++ +++...||+++++++|+
T Consensus 116 ~~~l~~~l~~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 116 RERLLELLRELAEE-GRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 99999999998764 78999999975 57788899999999875
No 356
>PLN03232 ABC transporter C family member; Provisional
Probab=99.97 E-value=2.8e-31 Score=327.19 Aligned_cols=188 Identities=19% Similarity=0.343 Sum_probs=155.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++|+|+|+++++||.++|+||+|||||||+++|.|..+ +.+|.+. ..++.++||+|++.+++. |++|
T Consensus 629 ~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-~~~G~i~---------~~~~~Iayv~Q~p~Lf~g-TIre 697 (1495)
T PLN03232 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS-HAETSSV---------VIRGSVAYVPQVSWIFNA-TVRE 697 (1495)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc-ccCCCEE---------EecCcEEEEcCccccccc-cHHH
Confidence 3579999999999999999999999999999999999987 6777652 357789999999999975 9999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-------cccC----CCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-------RRNI----SELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~v----~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
||.|+.. .++ ++.+++++..+|.+.. ++.+ ..||||||||++||||+.++|+|++||||
T Consensus 698 NI~fg~~------~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEp 767 (1495)
T PLN03232 698 NILFGSD------FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDP 767 (1495)
T ss_pred HhhcCCc------cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9998642 222 3455566655554322 2333 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 188 TVNLDPLSTYLIVSM-LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 188 TsgLD~~~~~~i~~~-L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|++||+.++.++++. ++... .++|+|+++|++ ...+.+|+|++|++|++++.|+.+++.+
T Consensus 768 tSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~--~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 768 LSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQL--HFLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred ccccCHHHHHHHHHHHhhhhh--cCCEEEEEECCh--hhHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999988765 55442 478999999986 3578899999999999999999988764
No 357
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.9e-31 Score=247.42 Aligned_cols=205 Identities=23% Similarity=0.339 Sum_probs=165.2
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe---CC-----cc----cccCeEEEEc
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MS-----PQ----LFQTTCGYVN 105 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~---~~-----~~----~~~~~i~yv~ 105 (606)
+...-.+||||++.|||+++|+|.|||||||||++|++++. |+.|+|.|.-.+ .+ +. ..|...|+|.
T Consensus 17 g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~Vh 95 (258)
T COG4107 17 GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-PDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVH 95 (258)
T ss_pred CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-CCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceee
Confidence 34567899999999999999999999999999999999998 789999996432 21 11 1456789999
Q ss_pred CCCC--CCCCC----CHHHHHHH-HHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhh
Q psy10223 106 HRTD--LIPSL----TVEQTLYY-AAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVK 177 (606)
Q Consensus 106 q~~~--~~~~l----TV~e~l~f-~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~ 177 (606)
|++. +-... .+.|-+.- +++ .-...++...++|+++.+.. ..|..++..|||+|||+.|||-|++
T Consensus 96 QnP~DGLRm~VSAG~NiGERlma~G~R-------HYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt 168 (258)
T COG4107 96 QNPRDGLRMQVSAGGNIGERLMAIGAR-------HYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVT 168 (258)
T ss_pred cCccccceeeeccCCccchhHHhhhhh-------hhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhcc
Confidence 9864 32222 23333321 111 11134566788999998864 4578899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.|+++++||||-|||.+.+..++++++.+.++.+.++++++|+. .-+--++||.++|++|++++.|-++.+++
T Consensus 169 ~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk~g~vve~GLTDrvLD 241 (258)
T COG4107 169 RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMKQGQVVESGLTDRVLD 241 (258)
T ss_pred CCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeecCCCEecccccccccc
Confidence 99999999999999999999999999999999999999999864 45566789999999999999999887754
No 358
>PLN03130 ABC transporter C family member; Provisional
Probab=99.97 E-value=5.8e-31 Score=324.84 Aligned_cols=187 Identities=17% Similarity=0.304 Sum_probs=156.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCe-eEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR-GEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~-G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
.+++|+|+|+++++||.++|+||+|||||||+++|.|..+ +.+ |+|.+ ++.++||+|++.+++. |++
T Consensus 629 ~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-~~~GG~I~l----------~~~Iayv~Q~p~Lfng-TIr 696 (1622)
T PLN03130 629 ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP-PRSDASVVI----------RGTVAYVPQVSWIFNA-TVR 696 (1622)
T ss_pred CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc-cCCCceEEE----------cCeEEEEcCccccCCC-CHH
Confidence 3579999999999999999999999999999999999988 788 89863 5679999999999875 999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-------ccc----CCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-------RRN----ISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~----v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
|||.|+.. .+ +++.+++++..+|.+.. ++. ...|||||||||+||||+.++|+|++|||
T Consensus 697 eNI~fg~~------~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDE 766 (1622)
T PLN03130 697 DNILFGSP------FD----PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDD 766 (1622)
T ss_pred HHHhCCCc------cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECC
Confidence 99998642 12 24456666666654322 233 34699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 187 PTVNLDPLSTYLIVS-MLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 187 PTsgLD~~~~~~i~~-~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||++||+.++.++.+ .++.+. .++|+|+++|++ ...+.+|+|++|++|+++..|+.+++.+
T Consensus 767 ptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 767 PLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQL--HFLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred CccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCH--hHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 999999999998865 566553 478999999986 4678899999999999999999988763
No 359
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=6.5e-31 Score=323.47 Aligned_cols=190 Identities=24% Similarity=0.361 Sum_probs=155.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++| .++|++|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~-~~~G~i~~~g----------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-PSEGKIKHSG----------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECC----------EEEEEeCCCccCCc-cHHHH
Confidence 569999999999999999999999999999999999988 7899999987 49999999999885 99999
Q ss_pred HHHHHHccCCCCCCHHHHHH-----HHHHHHHHcC--CchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 120 LYYAAHLSIGPQVSRYVRNA-----RIRQVLADLA--LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~-----~v~~~l~~lg--L~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
+.|+... .....++ ..++.++.+. .....+.+...|||||||||+||||++.+|++++|||||+|||
T Consensus 507 I~~g~~~------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD 580 (1490)
T TIGR01271 507 IIFGLSY------DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLD 580 (1490)
T ss_pred HHhcccc------chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 9987421 1111111 1122222221 1112344577999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 193 PLSTYLIVSM-LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 193 ~~~~~~i~~~-L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.++.++.+. ++.+. .++|+|+++|++. . .+.||+|++|++|+++..|+.+++.+
T Consensus 581 ~~~~~~i~~~~l~~~~--~~~tvilvtH~~~-~-~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 581 VVTEKEIFESCLCKLM--SNKTRILVTSKLE-H-LKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHHHHHHHHh--cCCeEEEEeCChH-H-HHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999985 66664 3799999999874 3 45699999999999999999988753
No 360
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=1.1e-30 Score=321.94 Aligned_cols=192 Identities=21% Similarity=0.312 Sum_probs=157.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++ +.++|++|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~-~~~G~i~~~----------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-ISEGRVWAE----------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEEC----------CeEEEEeCCCccCC-CcHHH
Confidence 4679999999999999999999999999999999999987 788999752 46999999998774 69999
Q ss_pred HHHHHHHccCCCCCCHHHH-----HHHHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 119 TLYYAAHLSIGPQVSRYVR-----NARIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
|+.|... ...+.. ...+++.++.+ |+....+++...|||||||||+|||||+.+|++++|||||++|
T Consensus 740 nI~~~~~------~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saL 813 (1560)
T PTZ00243 740 NILFFDE------EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSAL 813 (1560)
T ss_pred HHHcCCh------hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccC
Confidence 9988532 111111 11234445555 6766677889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|+.++..+++.+..... .|+|+|+++|++. ..+.+|+|++|++|++++.|+.+++.+
T Consensus 814 D~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~--~~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 814 DAHVGERVVEECFLGAL-AGKTRVLATHQVH--VVPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred CHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999998875432222 4789999999863 457899999999999999999988753
No 361
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.97 E-value=1.2e-30 Score=322.05 Aligned_cols=191 Identities=18% Similarity=0.315 Sum_probs=155.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++| .++|++|++.+++ .||+||
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~-~~~G~i~~~g----------~i~yv~Q~~~l~~-~Ti~eN 718 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-KVEGHVHMKG----------SVAYVPQQAWIQN-DSLREN 718 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-cCCcEEEECC----------EEEEEcCCccccC-CcHHHH
Confidence 569999999999999999999999999999999999987 7889999986 4999999998764 699999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHH---HHHHcCC-----chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQ---VLADLAL-----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~---~l~~lgL-----~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
+.|+.. ..++..+ ++.+ +.+.++. ....+++...||||||||++||||+..+|++++|||||++|
T Consensus 719 I~~g~~------~~~~~~~-~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saL 791 (1522)
T TIGR00957 719 ILFGKA------LNEKYYQ-QVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 791 (1522)
T ss_pred hhcCCc------cCHHHHH-HHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 998632 1222111 1211 1223322 22334567889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH-HhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 192 DPLSTYLIVSMLSSYA-KRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~-~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|+.++..+.+.+.+.. ...++|+|+++|++. ..+.+|+|++|++|+++..|+.+++.+
T Consensus 792 D~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 792 DAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred CHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 9999999999997532 124789999999874 345699999999999999999988763
No 362
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=3.2e-30 Score=258.47 Aligned_cols=191 Identities=21% Similarity=0.303 Sum_probs=136.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHH-HHHHcCCCCCCeeEEEEC-----------C-E-eCCccccc-CeEEE
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALL-EVISRRSSGTTRGEIILD-----------G-T-PMSPQLFQ-TTCGY 103 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLL-k~L~g~~~~~~~G~I~~~-----------G-~-~~~~~~~~-~~i~y 103 (606)
+.++|+|+|+++++||+++|+||||||||||+ ..|.. .|++.+. | . .......+ ....+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAI 80 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH------HHHHHHhhcccchhhhhhcccCccccccccCCCceE
Confidence 35799999999999999999999999999996 44431 1111110 0 0 00001111 12333
Q ss_pred EcCCC--CCCCCCCHHH---HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhh
Q psy10223 104 VNHRT--DLIPSLTVEQ---TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVK 177 (606)
Q Consensus 104 v~q~~--~~~~~lTV~e---~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~ 177 (606)
..|++ ...|..+|.. ...+...+. ......++ .+.++.+++.+ ..++++++|||||||||+||++|+.
T Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 81 AIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred EecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHh
Confidence 33333 2345556553 222221110 11112233 56899999987 5899999999999999999999999
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEec
Q psy10223 178 DP--VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAG 244 (606)
Q Consensus 178 ~p--~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G 244 (606)
+| +++++||||+|||+.++..+.+.|+++++ .|.|+|+++|++. .+ +.||++++| ++|+++++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 98 59999999999999999999999999875 5889999999864 44 699999999 999999876
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=2.5e-30 Score=285.77 Aligned_cols=199 Identities=26% Similarity=0.386 Sum_probs=164.3
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lT 115 (606)
.++.+.+++|+|+.+.+|+.+||+|+||||||||||+|+|... +++|+|...+ ..+++|++|+....+..|
T Consensus 12 ~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~-~~~G~i~~~~--------~~~v~~l~Q~~~~~~~~t 82 (530)
T COG0488 12 AYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE-PDSGEVTRPK--------GLRVGYLSQEPPLDPEKT 82 (530)
T ss_pred eeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc-CCCCeEeecC--------CceEEEeCCCCCcCCCcc
Confidence 3456789999999999999999999999999999999999987 7889997642 136999999999999999
Q ss_pred HHHHHHHHHHcc-------------CCCC--------------CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHH
Q psy10223 116 VEQTLYYAAHLS-------------IGPQ--------------VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRR 168 (606)
Q Consensus 116 V~e~l~f~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqR 168 (606)
|.+.+.-+..-. .+.. ....+.+.++..++..+|+.+. ++++++||||||+|
T Consensus 83 v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~R 161 (530)
T COG0488 83 VLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRR 161 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHH
Confidence 999886543210 0000 0001123567788888999887 99999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-EecChh
Q psy10223 169 VVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAGPTR 247 (606)
Q Consensus 169 vsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G~~~ 247 (606)
|+||++|+.+|++|+|||||++||..+...+-+.|++. .| |+|+++|+ +..+-+.|++|+-|+.|++. |.|+-+
T Consensus 162 v~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHD-R~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 162 VALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHD-RYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCC-HHHHHHHhhheEEecCCceeEecCCHH
Confidence 99999999999999999999999999999999999864 45 88888884 78899999999999999864 557655
Q ss_pred HH
Q psy10223 248 LM 249 (606)
Q Consensus 248 ~~ 249 (606)
..
T Consensus 237 ~~ 238 (530)
T COG0488 237 SY 238 (530)
T ss_pred HH
Confidence 43
No 364
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=9.4e-31 Score=300.55 Aligned_cols=205 Identities=20% Similarity=0.280 Sum_probs=146.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--CCCeeEEEECCEeC-----Cc------------ccccC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--GTTRGEIILDGTPM-----SP------------QLFQT 99 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~~~~G~I~~~G~~~-----~~------------~~~~~ 99 (606)
.+.+|+|+|++|++||.++|+||||||||||||+|+|+.. -+..|+|.+.++.. +. ...++
T Consensus 189 ~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~ 268 (718)
T PLN03073 189 GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEE 268 (718)
T ss_pred CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHH
Confidence 4569999999999999999999999999999999999641 14567776644321 10 00112
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHccCCC---------------CCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCH
Q psy10223 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGP---------------QVSRYVRNARIRQVLADLALS-NVARRNISELTP 163 (606)
Q Consensus 100 ~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~---------------~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSg 163 (606)
.+++++|++.+... ++.++.........+. .......+.++.++|..+|+. +..++++++|||
T Consensus 269 ~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSg 347 (718)
T PLN03073 269 EAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSG 347 (718)
T ss_pred HHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCH
Confidence 24444443322110 1111100000000000 000112345677888889986 567889999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-E
Q psy10223 164 SEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-Y 242 (606)
Q Consensus 164 GerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~ 242 (606)
||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++ +.|+|+++|+ .+.+.++||++++|++|+++ |
T Consensus 348 G~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsHd-~~~l~~~~d~i~~l~~g~i~~~ 422 (718)
T PLN03073 348 GWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSHA-REFLNTVVTDILHLHGQKLVTY 422 (718)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEECC-HHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999875 5789999987 46788999999999999996 6
Q ss_pred ecChhHH
Q psy10223 243 AGPTRLM 249 (606)
Q Consensus 243 ~G~~~~~ 249 (606)
.|+.++.
T Consensus 423 ~g~~~~~ 429 (718)
T PLN03073 423 KGDYDTF 429 (718)
T ss_pred CCCHHHH
Confidence 7776654
No 365
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=6.6e-31 Score=241.99 Aligned_cols=130 Identities=39% Similarity=0.711 Sum_probs=118.6
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||+|+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH-ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999987 689999999999865 3467889999999999999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccC----CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI----SELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v----~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
...++++++++.+++.+..++.+ +.||+||||||+||+||+.+|++++|||||+
T Consensus 80 ----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ----------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ----------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ----------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23456888999999888777777 9999999999999999999999999999996
No 366
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.4e-31 Score=274.96 Aligned_cols=205 Identities=24% Similarity=0.369 Sum_probs=167.9
Q ss_pred eccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCC
Q psy10223 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDL 110 (606)
Q Consensus 34 ~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~ 110 (606)
|...+.+++|+++|+.+++|+.++++||+|+||||++++|-..+. ..+|.|.++|+++.. ...|+.||.||||..+
T Consensus 270 F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD-~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvL 348 (497)
T COG5265 270 FAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD-VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVL 348 (497)
T ss_pred eeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC-CcCceEEEcchhHHHhHHHHHHHHhCcCccccee
Confidence 445567899999999999999999999999999999999999988 688999999998753 4578899999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHH-----HHHHHHcCCchhhcccCC----CCCHHHHHHHHHHHHHhhCCCE
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARI-----RQVLADLALSNVARRNIS----ELTPSEHRRVVIGTQLVKDPVL 181 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~v~----~LSgGerqRvsIa~aL~~~p~l 181 (606)
|.. |...|+.++-. ..+.++....+ .+.++ .+.+-.++.|+ .|||||||||+|||+++++|++
T Consensus 349 FND-ti~yni~ygr~-----~at~eev~aaa~~aqi~~fi~--~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~i 420 (497)
T COG5265 349 FND-TIAYNIKYGRP-----DATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPI 420 (497)
T ss_pred hhh-hHHHHHhccCc-----cccHHHHHHHHHHhhhhHHHH--hCchhhhcccchheeeccCchHHHHHHHHHHhcCCCE
Confidence 865 88888887632 23333332221 12222 23444556664 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 182 LLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 182 lllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+++||.||+||..+..++...|++.+ .|+|.+++.|..+ ..--+|+++||++|++++.|.-++++.
T Consensus 421 l~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrls--ti~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 421 LILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLS--TIIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred EEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhh--hccCCceEEEeeCCEEEecCcHHHHHH
Confidence 99999999999999999999999987 4778887778653 344599999999999999999998875
No 367
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=6.9e-29 Score=252.72 Aligned_cols=195 Identities=24% Similarity=0.332 Sum_probs=153.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHH-----cCCCC----C-----------CeeEEEECCEeCCcc----
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS-----RRSSG----T-----------TRGEIILDGTPMSPQ---- 95 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~-----g~~~~----~-----------~~G~I~~~G~~~~~~---- 95 (606)
..-|+|||..++.|++++|.|+||||||||++.+. ..... + ..--|.++..++...
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 34699999999999999999999999999998552 11000 1 111356666555310
Q ss_pred ---------cccC----------------eEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC
Q psy10223 96 ---------LFQT----------------TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150 (606)
Q Consensus 96 ---------~~~~----------------~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL 150 (606)
..|+ .+.|..++...+..+||.|++.|..... ..+++.++|+.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 0111 2456666666678999999999876531 12456789999999
Q ss_pred ch-hhcccCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHH
Q psy10223 151 SN-VARRNISELTPSEHRRVVIGTQLVKD---PVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVL 226 (606)
Q Consensus 151 ~~-~~~~~v~~LSgGerqRvsIa~aL~~~---p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~ 226 (606)
.+ ..+++++.||||||||++||++|+.+ |++++|||||+|||+..+..+.+.|+++.+ .|.|+|+++|++. . .
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvIiitH~~~-~-i 235 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGNTVVVIEHNLD-V-I 235 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-H-H
Confidence 87 58999999999999999999999996 799999999999999999999999999975 4889999999863 3 4
Q ss_pred hcCCeEEEE------cCCeEEEecCh
Q psy10223 227 PFLDRTAYL------CLGDLIYAGPT 246 (606)
Q Consensus 227 ~~~D~v~vL------~~G~~v~~G~~ 246 (606)
+.+|+++.| ++|++++.|++
T Consensus 236 ~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 236 KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 679999999 89999999874
No 368
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.5e-28 Score=265.86 Aligned_cols=202 Identities=23% Similarity=0.405 Sum_probs=173.4
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCC---CCCCCCC
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHR---TDLIPSL 114 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~---~~~~~~l 114 (606)
-++|+||++++||+++|-|--|||+|-|+++|.|..+ ..+|+|.++|+++.. ...+..++||++| +-+++.+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~-~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP-ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc-CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 5899999999999999999999999999999999766 678999999998753 2356789999998 4589999
Q ss_pred CHHHHHHHHHHccCCC--CCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 115 TVEQTLYYAAHLSIGP--QVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
+|.+|+.++...+... .+++...++.+++..+.+++. +..+..++.||||.||||.||+.|..+|++|||||||+|.
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGI 432 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGI 432 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCc
Confidence 9999999883222111 255555667788999999985 4567889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecCh
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~ 246 (606)
|.-++.++.++|++++++ |++||+++.. .+|+..+||||+||++|+++..-+.
T Consensus 433 DVGAK~eIy~li~~lA~~-G~ail~iSSE-lpEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 433 DVGAKAEIYRLIRELAAE-GKAILMISSE-LPELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred ccchHHHHHHHHHHHHHC-CCEEEEEeCC-hHHHHhhCCEEEEEECCEEEEEecc
Confidence 999999999999999975 8888887664 5689999999999999999875443
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=1.3e-28 Score=241.82 Aligned_cols=165 Identities=15% Similarity=0.268 Sum_probs=133.5
Q ss_pred EeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC--------CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCC
Q psy10223 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--------TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 44 ~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--------~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lT 115 (606)
+++++++++| +++|+|||||||||||++|+|+..+ ...|++.++|.+......++.+++++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999987631 22357888887654333457899999998765
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV----KDPVLLLLDEPTVNL 191 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~----~~p~llllDEPTsgL 191 (606)
|... ..++++++++. .+..++.++.||||||||++||++++ .+|+++++||||+||
T Consensus 89 ------~~~~-----------~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 89 ------YSII-----------SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred ------eeEE-----------ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 1110 12356677766 55678899999999999999999997 467999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
|+..+..+.+.|+++++ +.|+|+++|++. ..+.+|+++.+..
T Consensus 149 D~~~~~~l~~~l~~~~~--~~tiIiitH~~~--~~~~~d~v~~~~~ 190 (197)
T cd03278 149 DDANVERFARLLKEFSK--ETQFIVITHRKG--TMEAADRLYGVTM 190 (197)
T ss_pred CHHHHHHHHHHHHHhcc--CCEEEEEECCHH--HHhhcceEEEEEe
Confidence 99999999999999864 578999999863 4578999999975
No 370
>KOG0054|consensus
Probab=99.95 E-value=8.8e-28 Score=284.20 Aligned_cols=188 Identities=23% Similarity=0.381 Sum_probs=159.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
..+.|+|||++|++|+++||+||-|||||+||.+|.|..+ ..+|+|.++|. ++|++|++.++.. ||+|
T Consensus 533 ~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~-~~sG~v~v~gs----------iaYv~Q~pWI~ng-Tvre 600 (1381)
T KOG0054|consen 533 PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP-KLSGSVAVNGS----------VAYVPQQPWIQNG-TVRE 600 (1381)
T ss_pred CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc-cccceEEEcCe----------EEEeccccHhhCC-cHHH
Confidence 4458999999999999999999999999999999999998 78899998874 8999999998865 9999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcc-----------cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR-----------NISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-----------~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
|+.|+.. .. +++-+++++...|++..+. +.-.||||||||+++|||+-+++++++||.|
T Consensus 601 NILFG~~------~d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDp 670 (1381)
T KOG0054|consen 601 NILFGSP------YD----EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDP 670 (1381)
T ss_pred hhhcCcc------cc----HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCc
Confidence 9999753 22 3455566666666543322 2347999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.|++|+.+..++.+..-+.. -.++|+|+++||- +..+.+|.|++|++|++...|+.+|+++
T Consensus 671 lSAVDahvg~~if~~ci~~~-L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 671 LSAVDAHVGKHIFEECIRGL-LRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred chhhhHhhhHHHHHHHHHhh-hcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 99999999999887665433 3579999999973 6889999999999999999999999984
No 371
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.7e-28 Score=227.10 Aligned_cols=193 Identities=25% Similarity=0.367 Sum_probs=160.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe--CC-----cc----cccCeEEEEcCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP--MS-----PQ----LFQTTCGYVNHR 107 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~--~~-----~~----~~~~~i~yv~q~ 107 (606)
..++|+|+|++++.||++++=||||||||||||+|-+.+. +++|+|++.-.. ++ +. ..|+.+|||.|-
T Consensus 23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQF 101 (235)
T COG4778 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-PDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQF 101 (235)
T ss_pred EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-CCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHH
Confidence 3579999999999999999999999999999999999887 789999985322 21 11 235679999999
Q ss_pred CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 108 TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 108 ~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
-...|..+..|.+.-.+.. .+++.+..+.++.+++.++.+.+ ..+-.+...||||||||.|||.++.+=+||+|||
T Consensus 102 LRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDE 178 (235)
T COG4778 102 LRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDE 178 (235)
T ss_pred HHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecC
Confidence 8888988888777666542 35677778889999999999965 5566789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
||+.||..++.-+++++++.. ..|..++=+-|+ .+--...+||++-+..
T Consensus 179 PTasLDa~Nr~vVveli~e~K-a~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 179 PTASLDATNRAVVVELIREAK-ARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred CcccccccchHHHHHHHHHHH-hcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 999999999999999999864 467777777664 3344568899887653
No 372
>KOG0054|consensus
Probab=99.95 E-value=2.4e-28 Score=289.00 Aligned_cols=197 Identities=24% Similarity=0.389 Sum_probs=165.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
...+|||||++|+|||-+||+|+.|||||||.++|-++.. +.+|+|.+||.++.. ..+|++++.+||||.+|.. |
T Consensus 1152 lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e-~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-T 1229 (1381)
T KOG0054|consen 1152 LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE-PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-T 1229 (1381)
T ss_pred CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC-ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-c
Confidence 4579999999999999999999999999999999999887 688999999999875 4689999999999999987 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-------hcccC----CCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-------ARRNI----SELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v----~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
||.||+=.. ..++ +++-++|++.+|.+. +|..+ ..+|-||||-+++||||+++++||+|
T Consensus 1230 vR~NLDPf~------e~sD----~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvL 1299 (1381)
T KOG0054|consen 1230 VRFNLDPFD------EYSD----DEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVL 1299 (1381)
T ss_pred cccccCccc------ccCH----HHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEE
Confidence 999986321 1222 334445555544332 33333 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||.|++.|+.|-..+-+.||+.= .++|||.+.|.- ..+.+ +|||+||++|+++++|+|.++++
T Consensus 1300 DEATAsVD~~TD~lIQ~tIR~~F--~dcTVltIAHRl-~TVmd-~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1300 DEATASVDPETDALIQKTIREEF--KDCTVLTIAHRL-NTVMD-SDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred ecccccCChHHHHHHHHHHHHHh--cCCeEEEEeecc-chhhh-cCeEEEeeCCeEeecCChHHHHh
Confidence 99999999999999999999864 478999988864 35555 89999999999999999999875
No 373
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=7.9e-28 Score=243.31 Aligned_cols=190 Identities=16% Similarity=0.230 Sum_probs=137.4
Q ss_pred eccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC----------------CCCCee--------EEEECC
Q psy10223 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----------------SGTTRG--------EIILDG 89 (606)
Q Consensus 34 ~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~----------------~~~~~G--------~I~~~G 89 (606)
|++++++.++++++ |++++|+|||||||||||++|++.+ . +.+| +|.+++
T Consensus 9 fksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~-~~~~~~~~~~~v~i~~~~ 82 (243)
T cd03272 9 FKSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLH-EGSGPSVMSAYVEIIFDN 82 (243)
T ss_pred ccCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEe-CCCCCCCceEEEEEEEEc
Confidence 44556677888887 7899999999999999999998431 1 1233 555555
Q ss_pred Ee----CC--cccccCeEEEEcCCCCCCC-CCCHHHHHHHHHHccCCCCCCHH-HHHHHHHHHHHHcCCchhhcccCCCC
Q psy10223 90 TP----MS--PQLFQTTCGYVNHRTDLIP-SLTVEQTLYYAAHLSIGPQVSRY-VRNARIRQVLADLALSNVARRNISEL 161 (606)
Q Consensus 90 ~~----~~--~~~~~~~i~yv~q~~~~~~-~lTV~e~l~f~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~v~~L 161 (606)
.+ +. +...++.+++++|+..+++ ..|..|...+............. .... ++.+.+++.+..+++++.|
T Consensus 83 ~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg---~i~~l~~l~~~~~~~~~~l 159 (243)
T cd03272 83 SDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQG---KINSLTNMKQDEQQEMQQL 159 (243)
T ss_pred CCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcC---chHHhhhcccccccccccc
Confidence 32 11 1235667899988877776 46777766665543222110000 0011 2333355566678899999
Q ss_pred CHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc
Q psy10223 162 TPSEHRRVVIGTQLVK----DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 162 SgGerqRvsIa~aL~~----~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~ 236 (606)
|||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ ++++|+++|. .++.++||++++|.
T Consensus 160 S~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~--~~~~~~~d~i~~l~ 234 (243)
T cd03272 160 SGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFR--PELLEVADKFYGVK 234 (243)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecC--HHHHhhCCEEEEEE
Confidence 9999999999999974 5899999999999999999999999999854 6788877775 36889999999986
No 374
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=7.3e-27 Score=258.23 Aligned_cols=189 Identities=25% Similarity=0.365 Sum_probs=158.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCC-CCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRT-DLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~-~~~~~lTV~ 117 (606)
++.+++++|+.+++|+.++|+||||+|||||||+|+|... +.+|+|.+.- .-++||..|+. .+.+..|+.
T Consensus 334 ~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-~~~G~v~~g~--------~v~igyf~Q~~~~l~~~~t~~ 404 (530)
T COG0488 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-PLSGTVKVGE--------TVKIGYFDQHRDELDPDKTVL 404 (530)
T ss_pred CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc-cCCceEEeCC--------ceEEEEEEehhhhcCccCcHH
Confidence 3689999999999999999999999999999999999887 6689998742 13589999986 455888999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
|.+.-... .. .+..++..|..++++. ...++++.||||||.||.+|+.++.+|.+|+|||||+.||..+.
T Consensus 405 d~l~~~~~-----~~----~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~ 475 (530)
T COG0488 405 EELSEGFP-----DG----DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL 475 (530)
T ss_pred HHHHhhCc-----cc----cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHH
Confidence 98864331 11 1567899999999964 55789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEe-cChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYA-GPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~-G~~~~~~~ 251 (606)
..+.+.|... ..|+|+++|+ +..+-..+++++.+.+ ++..+ |.-++-.+
T Consensus 476 ~aLe~aL~~f----~Gtvl~VSHD-r~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 476 EALEEALLDF----EGTVLLVSHD-RYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred HHHHHHHHhC----CCeEEEEeCC-HHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 9999999865 4578888886 5689999999999998 55444 77655443
No 375
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=1.1e-28 Score=229.19 Aligned_cols=197 Identities=26% Similarity=0.375 Sum_probs=171.1
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
-|-.+|+++..||++-++|||||||||||-.++|+.+ -+|+|.++|.++.. .++.+.-+|..|+..-...+.|.+
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~--~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCC--CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 3778999999999999999999999999999999985 57999999999854 235566789988877666788988
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhh-------CCCEEEEeCCCCCC
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVK-------DPVLLLLDEPTVNL 191 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~-------~p~llllDEPTsgL 191 (606)
.|... .+.++....++++...++|++...+.+..|||||-|||-+|-..+. ..++|+||||.++|
T Consensus 92 YL~L~--------qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~L 163 (248)
T COG4138 92 YLTLH--------QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSL 163 (248)
T ss_pred hhhhc--------CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcch
Confidence 87543 2335566778899999999999999999999999999999987664 34699999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|.+....+-++|.++++ .|.+||++.|+ .....+.+|++++|+.|+++..|.++|++
T Consensus 164 DvAQ~~aLdrll~~~c~-~G~~vims~HD-LNhTLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 164 DVAQQSALDRLLSALCQ-QGLAIVMSSHD-LNHTLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred hHHHHHHHHHHHHHHHh-CCcEEEEeccc-hhhHHHHHHHHHHHhcCeEEeecchhhhc
Confidence 99999999999999997 59999999886 45788999999999999999999999886
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=3.8e-28 Score=241.03 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=136.8
Q ss_pred ccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCC
Q psy10223 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 35 ~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~l 114 (606)
+.++.+.+|+++++ ++++|+||||||||||+++|.-. .|.+.. ...++++++++|+..++|.+
T Consensus 12 k~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-----------~G~~~~-~~~~~~i~~~~~~~~~~~~~ 74 (212)
T cd03274 12 KSYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-----------FGFRAS-KMRQKKLSDLIHNSAGHPNL 74 (212)
T ss_pred ccCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-----------hccCHH-HhhhhhHHHHhcCCCCCCCC
Confidence 35556789999987 89999999999999999999722 222221 11125688889988888999
Q ss_pred CHHHHHHHHHHccC-----CCCCCHHHHHH--HHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhh----CCCEEE
Q psy10223 115 TVEQTLYYAAHLSI-----GPQVSRYVRNA--RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVK----DPVLLL 183 (606)
Q Consensus 115 TV~e~l~f~~~~~~-----~~~~~~~~~~~--~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~----~p~lll 183 (606)
|+.|.+.+...... ..+........ ...++++.+++.+..+++++.||+|||||++||++++. +|++++
T Consensus 75 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ili 154 (212)
T cd03274 75 DSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYV 154 (212)
T ss_pred ceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEE
Confidence 99887766543210 00111111000 12556677888888899999999999999999999974 579999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
+||||+|||+.++..+.+.|+++++ +.++|+++|++ ++.+.||++++|+.
T Consensus 155 lDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 155 MDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 9999999999999999999999853 45666666764 78899999999975
No 377
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.94 E-value=1.5e-25 Score=238.16 Aligned_cols=207 Identities=25% Similarity=0.404 Sum_probs=177.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeC----Ccc-cccCeEEEEcCCC---CCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM----SPQ-LFQTTCGYVNHRT---DLI 111 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~----~~~-~~~~~i~yv~q~~---~~~ 111 (606)
...++||||+|++||+++|.|-.|-|-+.|+.+|+|+.+ +.+|+|.++|+++ +.. ..+..++|||+|. -+.
T Consensus 271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~-~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv 349 (501)
T COG3845 271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-PASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLV 349 (501)
T ss_pred CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc-cCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccc
Confidence 467999999999999999999999999999999999987 5569999999996 222 2456799999986 478
Q ss_pred CCCCHHHHHHHHHHcc----CCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 112 PSLTVEQTLYYAAHLS----IGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~----~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
+.+|+.||+.+...-+ ...-....+..+..++++++++.. .-.+.+++.||||.+||+-+||+|..+|++|+..+
T Consensus 350 ~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~q 429 (501)
T COG3845 350 LDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQ 429 (501)
T ss_pred cCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcC
Confidence 9999999998875431 111255667778889999999987 34566789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
||+|||..++..+.+.|.+.++ .|+.|++++. ..+++++++||+.||++|+++...+++++
T Consensus 430 PTrGLDvgA~~~I~~~l~e~r~-~G~AVLLiS~-dLDEil~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 430 PTRGLDVGAIEFIHERLLELRD-AGKAVLLISE-DLDEILELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred CCccccHHHHHHHHHHHHHHHh-cCCEEEEEeh-hHHHHHHhhheeeeeeCCceecccccccC
Confidence 9999999999999999999976 5888888776 46899999999999999999988887763
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1e-26 Score=236.79 Aligned_cols=179 Identities=17% Similarity=0.196 Sum_probs=138.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCE-eCCc-----ccccCeEEEEcCCC---------CCCCCCCHH
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT-PMSP-----QLFQTTCGYVNHRT---------DLIPSLTVE 117 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~-~~~~-----~~~~~~i~yv~q~~---------~~~~~lTV~ 117 (606)
..+++|+|||||||||||++|++.+.+...|++...|. ++-. ...+..+.+++|++ .+.|.+||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 44999999999999999999999876333467877776 3211 11234788999985 356789999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc--------------------hhhcccCCCCCHHHHHHHHHHHHHh-
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS--------------------NVARRNISELTPSEHRRVVIGTQLV- 176 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--------------------~~~~~~v~~LSgGerqRvsIa~aL~- 176 (606)
+++......+...+ .+....+++.++|+.+++. +..++++++||||||||++||++|+
T Consensus 105 r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 88865432111000 1122346788999999986 4567889999999999999999998
Q ss_pred ---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc
Q psy10223 177 ---KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 177 ---~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~ 236 (606)
.+|+++++||||+|||+.++..+.+.|++++ .|.++|+++|. .++.+.+|+++-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~--~g~~ii~iSH~--~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF--KGSQFIVVSLK--EGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECC--HHHHHhCCEEEEEE
Confidence 5789999999999999999999999999985 37899999998 47888999998775
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=5.2e-26 Score=224.48 Aligned_cols=167 Identities=13% Similarity=0.172 Sum_probs=126.5
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHH----cCCCCCCeeEEEECCEeCCcccccCeEEEEcCCC-----CCCCCCC
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVIS----RRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRT-----DLIPSLT 115 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~----g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~-----~~~~~lT 115 (606)
..++++.+| +++|+|||||||||||++|. |... +..|.+..+...+.....+..+++++|++ .....+|
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~-~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP-PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC-cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 344567778 99999999999999999995 7765 44555542222222223456789999887 3345567
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHH------HHHHHHHhhCCCEEEEeCCCC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRR------VVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqR------vsIa~aL~~~p~llllDEPTs 189 (606)
+.|++.+.. . .++++.+ ++.++.||+||||| ++||++++.+|+++++||||+
T Consensus 93 ~~~~~~~~~---------~----~~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~ 150 (204)
T cd03240 93 ILENVIFCH---------Q----GESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTT 150 (204)
T ss_pred Hhhceeeec---------h----HHHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcc
Confidence 888775421 1 1223333 77899999999996 789999999999999999999
Q ss_pred CCCHHHHH-HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 190 NLDPLSTY-LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 190 gLD~~~~~-~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
+||+.++. .+.+.|++++++.+.++|+++|++ +..+.+|+++.|.+
T Consensus 151 ~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~--~~~~~~d~i~~l~~ 197 (204)
T cd03240 151 NLDEENIEESLAEIIEERKSQKNFQLIVITHDE--ELVDAADHIYRVEK 197 (204)
T ss_pred ccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH--HHHhhCCEEEEEee
Confidence 99999999 999999999765478999999985 35578999999964
No 380
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=1.5e-25 Score=222.61 Aligned_cols=180 Identities=16% Similarity=0.114 Sum_probs=129.6
Q ss_pred EeeEEEEe-CCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECC--EeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 44 KDISLEVR-PGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG--TPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 44 ~~vs~~v~-~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G--~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
++++|... +|++++|+|||||||||||++|++.+.++..+....+. ..+.....+..+++++|++.... ++....
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~~ 95 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERSR 95 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEec
Confidence 45666543 58999999999999999999999654333334443321 11111223456888888764311 111110
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCC
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVK----------DPVLLLLDEPTVN 190 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~----------~p~llllDEPTsg 190 (606)
..+..+..+.+ .+...++.+..+++++.||||||||++||++|+. +|+++++||||+|
T Consensus 96 ----------gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~ 163 (213)
T cd03279 96 ----------GLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGT 163 (213)
T ss_pred ----------CCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCccc
Confidence 22332222111 2444556778899999999999999999999985 5789999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
||+.++..+.+.|+++++ .+.|+|+++|++ +.+...+|+++++++|.
T Consensus 164 lD~~~~~~~~~~l~~~~~-~~~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 164 LDPEALEAVATALELIRT-ENRMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 999999999999999975 488999999976 57888999999999874
No 381
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.92 E-value=2.9e-24 Score=260.60 Aligned_cols=138 Identities=21% Similarity=0.251 Sum_probs=114.4
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHh---hCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLV---KDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~---~~p~llllD 185 (606)
.+...||.|+|.+...-........++..+++ ++|+.+||.+. .++.+.+|||||||||+||++|+ .+|++++||
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILD 837 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLD 837 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEe
Confidence 56678999999887652211112233444556 58899999986 79999999999999999999998 699999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc------CCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC------LGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~------~G~~v~~G~~~~~~~ 251 (606)
|||+|||+.++..+++.|+++++ .|.|||+++|++. .+ +.+|++++|. +|+++..|+++++..
T Consensus 838 EPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 838 EPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999976 4889999999863 45 8999999996 789999999988753
No 382
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.92 E-value=4.6e-24 Score=249.29 Aligned_cols=127 Identities=24% Similarity=0.312 Sum_probs=109.2
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDP---VLLLLDEPT 188 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p---~llllDEPT 188 (606)
.+||.|++.|...+. + ..+..+.|+.+||.. ..++++..||||||||+.||++|+.+| ++++|||||
T Consensus 791 ~ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPt 861 (943)
T PRK00349 791 DMTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPT 861 (943)
T ss_pred cCcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCC
Confidence 378999988876431 1 123467899999986 579999999999999999999999999 999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~~ 251 (606)
+|||+.++..+++.|+++.+ .|.|||+++|++. . .+.+|+|+.| ++|++++.|+++++.+
T Consensus 862 sGLD~~~~~~L~~~L~~l~~-~G~TVIiitH~~~-~-i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 862 TGLHFEDIRKLLEVLHRLVD-KGNTVVVIEHNLD-V-IKTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-H-HHhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999975 5889999999863 3 4689999999 7899999999988753
No 383
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=3e-24 Score=221.32 Aligned_cols=186 Identities=22% Similarity=0.312 Sum_probs=155.5
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---cccCeEEEEcCCCCCCCCCCHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---LFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
.=+..||+++++||++-|+|.||||||||++.|.|+.+ |.+|+|.+||.+++.+ ++|+-++-|+.|-.+|+.+--
T Consensus 337 FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~-PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~- 414 (546)
T COG4615 337 FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ-PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG- 414 (546)
T ss_pred ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC-CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC-
Confidence 34789999999999999999999999999999999998 8899999999999753 577777777777777765311
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch---hhcccC--CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN---VARRNI--SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~v--~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
+.+. ...+.++.+|+++.+.+ +.|... -.||.|||||+++..|++-+.+|+++||=-+.-|
T Consensus 415 -----------~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQD 480 (546)
T COG4615 415 -----------PEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQD 480 (546)
T ss_pred -----------CccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCC
Confidence 1111 12345777888887754 333333 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
|.-++.+.+.+--+-++.|+||+.++|+. .-+..+||++.+++|++++.-
T Consensus 481 PaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 481 PAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred hHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 99999999998888888999999999975 468999999999999998764
No 384
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.90 E-value=5.2e-24 Score=203.35 Aligned_cols=212 Identities=22% Similarity=0.320 Sum_probs=166.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC---CeeEEEECCEeC---Cccc----ccCeEEEEcCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDGTPM---SPQL----FQTTCGYVNHRT 108 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~---~~G~I~~~G~~~---~~~~----~~~~i~yv~q~~ 108 (606)
...+++++|+++..||+-+++|.||||||-..|+|+|..+.. +.-...+++.++ ++++ ..+.+++++|++
T Consensus 19 ~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP 98 (330)
T COG4170 19 WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCc
Confidence 456899999999999999999999999999999999986521 113345555553 2222 234678999997
Q ss_pred C--CCCCCCHHHHHHHHHHccCCCCCCH---HHHHHHHHHHHHHcCCch---hhcccCCCCCHHHHHHHHHHHHHhhCCC
Q psy10223 109 D--LIPSLTVEQTLYYAAHLSIGPQVSR---YVRNARIRQVLADLALSN---VARRNISELTPSEHRRVVIGTQLVKDPV 180 (606)
Q Consensus 109 ~--~~~~lTV~e~l~f~~~~~~~~~~~~---~~~~~~v~~~l~~lgL~~---~~~~~v~~LSgGerqRvsIa~aL~~~p~ 180 (606)
. +.|.-+|...|.-.......++... .-++.++-++|.++|+.+ ....++.+|.-||-|+|.||.|++.+|+
T Consensus 99 ~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPr 178 (330)
T COG4170 99 QSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPR 178 (330)
T ss_pred hhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCc
Confidence 5 6676666555433221111111100 013456788999999975 4567899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 181 LLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 181 llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+|+.||||+.+|+.++.++.++|.++.+..|.||++++|+ ...+-+.||++-||+-|+-++.++.+++++
T Consensus 179 LLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~D-l~~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 179 LLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD-LQMISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred eEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEccc-HHHHHHHhhheEEEEecccccccchhHHhc
Confidence 9999999999999999999999999998889999998886 568999999999999999999999998875
No 385
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=2.4e-23 Score=204.51 Aligned_cols=171 Identities=19% Similarity=0.249 Sum_probs=123.8
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC----cccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS----PQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~----~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++++.+.+| +.+|+|||||||||||.+|.....+... ....|.... ...-...+...+|....+++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~--~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~----- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS--DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN----- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc--cccccccHHHHhhCCCCeEEEEEEEEcCCccCC-----
Confidence 46788888888 8899999999999999998743321110 001121111 01113456777776655441
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQL----VKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL----~~~p~llllDEPTsgLD~~ 194 (606)
. .. ...+.+++++++. .+..+++++.||+|||||++||+++ +.+|+++++||||+|||+.
T Consensus 84 ------~------~~-~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 ------P------LC-VLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred ------c------CC-HHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 0 11 1123567777766 6778899999999999999999999 5899999999999999999
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 195 STYLIVSMLSSYAKR--KSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~--~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
++..+.+.|++++++ .+.++++++|+. +++.++ |+|.+|..++
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~-~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDI-SGLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcc-cccccc-cceeEEEecC
Confidence 999999999998654 345888888865 466664 9999998754
No 386
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.90 E-value=3.8e-23 Score=227.96 Aligned_cols=177 Identities=25% Similarity=0.389 Sum_probs=145.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+..|++.|+.+++||.+.|.||||||||||+|+|+|+-+ .-+|+|.+- -...+-|+||.+.+... |.+|-
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP-~g~G~I~~P--------~~~~~lflpQ~PY~p~G-tLre~ 475 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP-WGSGRISMP--------ADSALLFLPQRPYLPQG-TLREA 475 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc-cCCCceecC--------CCCceEEecCCCCCCCc-cHHHH
Confidence 478999999999999999999999999999999999986 455776441 12358899999987766 99999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhccc------CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN------ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~------v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+.++... ... ..+.+.++|.++||.+..++. -+.||+||||||++||.|+++|++++|||.|++||+
T Consensus 476 l~YP~~~---~~~----~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe 548 (604)
T COG4178 476 LCYPNAA---PDF----SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548 (604)
T ss_pred HhCCCCC---CCC----ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence 8875431 112 235688999999998876553 257999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
.+...+.+.|++.. .+.|+|-+.|.+ .+..+.++.+-+.+
T Consensus 549 ~~e~~l~q~l~~~l--p~~tvISV~Hr~--tl~~~h~~~l~l~~ 588 (604)
T COG4178 549 ETEDRLYQLLKEEL--PDATVISVGHRP--TLWNFHSRQLELLD 588 (604)
T ss_pred HHHHHHHHHHHhhC--CCCEEEEeccch--hhHHHHhhheeecc
Confidence 99999999998743 578999999976 46667777665543
No 387
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=9.7e-23 Score=237.84 Aligned_cols=125 Identities=21% Similarity=0.278 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhh---CCCEEEEeCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVK---DPVLLLLDEPT 188 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~---~p~llllDEPT 188 (606)
.+||.|.+.|...+. . ..+..++|+.+||.. ..++++++|||||+||+.||++|+. +|++++|||||
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPt 859 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPT 859 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCC
Confidence 367777777765421 1 123467889999986 4789999999999999999999997 59999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLM 249 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~ 249 (606)
+|||+..+..+.+.|+++.+ .|.|+|+++|++. .+ +.+|++++| ++|++++.|+++++
T Consensus 860 sgLD~~~~~~L~~~L~~l~~-~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 860 TGLHFDDIKKLLEVLQRLVD-QGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999975 4889999999863 44 679999999 79999999998764
No 388
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.89 E-value=5.8e-23 Score=215.26 Aligned_cols=174 Identities=22% Similarity=0.314 Sum_probs=141.5
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHH
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYY 122 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f 122 (606)
|.-=.+++..||+++++||||-||||+.|+|+|.++ |++|+ .. .-+++|-||--.--...||++.|.-
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik-Pdeg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~ 424 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK-PDEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRS 424 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc-CCCCC----Cc-------cceEeecceeecCCCCCcHHHHHHH
Confidence 444456667789999999999999999999999998 78776 11 2347777886554567799998876
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy10223 123 AAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202 (606)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~ 202 (606)
....+... ..-..++++-|.|++..++.+.+|||||.|||+||.+|..++++++||||++-||+..+..+.+.
T Consensus 425 ~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv 497 (591)
T COG1245 425 AIRSAFGS-------SYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV 497 (591)
T ss_pred hhhhhccc-------chhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH
Confidence 65422111 12235788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc
Q psy10223 203 LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 203 L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~ 236 (606)
+|+.+...++|.+++-|+. .-+--+.||++|..
T Consensus 498 IRR~~e~~~kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 498 IRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHhhcCceEEEEecce-ehhhhhhceEEEEe
Confidence 9999988889999987754 34555678888775
No 389
>KOG0927|consensus
Probab=99.88 E-value=5.6e-23 Score=219.56 Aligned_cols=208 Identities=20% Similarity=0.294 Sum_probs=137.3
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-CCeeEEEECCEeCCccc---cc----------CeE
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-TTRGEIILDGTPMSPQL---FQ----------TTC 101 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~~~G~I~~~G~~~~~~~---~~----------~~i 101 (606)
...++.+++|+++++.+|+-++|+|+|||||||+|++|.|+..+ |..=.+..-.+.+.+.. .+ .++
T Consensus 84 s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rl 163 (614)
T KOG0927|consen 84 SFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRL 163 (614)
T ss_pred ccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHH
Confidence 44567899999999999999999999999999999999998763 11112222222221110 00 001
Q ss_pred EEEcCCCCCC-CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-chhhcccCCCCCHHHHHHHHHHHHHhhCC
Q psy10223 102 GYVNHRTDLI-PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL-SNVARRNISELTPSEHRRVVIGTQLVKDP 179 (606)
Q Consensus 102 ~yv~q~~~~~-~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~v~~LSgGerqRvsIa~aL~~~p 179 (606)
.|..++-... +. --.+.+.-.-. + ...+..+....++.++|..+|. ++..++.+.++|||+|+|+++||+|..+|
T Consensus 164 e~~~E~l~~~~d~-~~~~~l~~~~~-r-~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP 240 (614)
T KOG0927|consen 164 EYLAEDLAQACDD-KEKDELDELYE-R-LDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKP 240 (614)
T ss_pred HHHHHHHHhhccc-hhhhHHHHHHH-H-HHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCC
Confidence 0000000000 00 00000000000 0 0012222344556677777765 46788999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe-EEEecChhHHH
Q psy10223 180 VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD-LIYAGPTRLML 250 (606)
Q Consensus 180 ~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~-~v~~G~~~~~~ 250 (606)
++|+|||||+|||..+...+-+.|.+..+ + ++++++| +.+.+-..|.+|+-|++++ +.|.|+-+...
T Consensus 241 ~LLLLDEPtnhLDleA~~wLee~L~k~d~--~-~lVi~sh-~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 241 DLLLLDEPTNHLDLEAIVWLEEYLAKYDR--I-ILVIVSH-SQDFLNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred CEEEecCCccCCCHHHHHHHHHHHHhccC--c-eEEEEec-chhhhhhHhhhhheecccceeeecCCHHHHh
Confidence 99999999999999999999999987632 2 5666555 5568889999999999999 55667766543
No 390
>KOG0927|consensus
Probab=99.88 E-value=1e-22 Score=217.59 Aligned_cols=193 Identities=21% Similarity=0.301 Sum_probs=149.3
Q ss_pred eccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCC--CCCC
Q psy10223 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHR--TDLI 111 (606)
Q Consensus 34 ~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~--~~~~ 111 (606)
|+..++-.++++++|-++.++.++++||||+|||||||++.|.+. |..|.|.-.-+. .+++-.|+ +.+.
T Consensus 397 F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-p~~G~vs~~~H~--------~~~~y~Qh~~e~ld 467 (614)
T KOG0927|consen 397 FGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-PTIGMVSRHSHN--------KLPRYNQHLAEQLD 467 (614)
T ss_pred cCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-cccccccccccc--------cchhhhhhhHhhcC
Confidence 444333479999999999999999999999999999999999998 778888643221 23333333 3344
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
-..++.|++.-... . ....+.++.+|.++||+ +..+.+++.||+|||+||..|+.++..|.+|+|||||+|
T Consensus 468 l~~s~le~~~~~~~----~----~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnh 539 (614)
T KOG0927|consen 468 LDKSSLEFMMPKFP----D----EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNH 539 (614)
T ss_pred cchhHHHHHHHhcc----c----cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcC
Confidence 55677777653321 1 12346688999999998 566778899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE-EEecChhH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL-IYAGPTRL 248 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~-v~~G~~~~ 248 (606)
||..+...+.+.|.++ ..++|+++|+- --|-+.++++.+..+|.+ .+.|....
T Consensus 540 LDi~tid~laeaiNe~----~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 540 LDIETIDALAEAINEF----PGGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDIEI 593 (614)
T ss_pred CCchhHHHHHHHHhcc----CCceeeeechh-hHHHHHHHHhHhhccCceeecCccHHH
Confidence 9999999999999775 23566667754 468888999999988764 55566443
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=1.4e-22 Score=205.86 Aligned_cols=173 Identities=15% Similarity=0.147 Sum_probs=116.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe--CCc--------ccccCeEEEEcCCCCC-CCCCCHHHHHHHH
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP--MSP--------QLFQTTCGYVNHRTDL-IPSLTVEQTLYYA 123 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~--~~~--------~~~~~~i~yv~q~~~~-~~~lTV~e~l~f~ 123 (606)
+++|+|||||||||||++|++... +..|++..++.. +.. ....-.+.|..|++.. .-.-++.+....
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~-~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~- 101 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLG-EKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSS- 101 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-CCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceE-
Confidence 999999999999999999998775 334555443311 000 0111234444443321 001111111000
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCchh----------------------hcccCCCCCHHHHHHHHHHHHHhhC---
Q psy10223 124 AHLSIGPQVSRYVRNARIRQVLADLALSNV----------------------ARRNISELTPSEHRRVVIGTQLVKD--- 178 (606)
Q Consensus 124 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~----------------------~~~~v~~LSgGerqRvsIa~aL~~~--- 178 (606)
.... ....+ .+.++++++.+|+... .++++..||+|||||++||++++.+
T Consensus 102 ~~in-gk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~ 176 (247)
T cd03275 102 YRIN-GKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQ 176 (247)
T ss_pred EEEC-CEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccC
Confidence 0000 11122 2345678888888421 2344589999999999999999875
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 179 -PVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 179 -p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
|+++++||||+|||+.++..+.+.|+++++ .|.++|+++|++ ++.+.+|++++|.+
T Consensus 177 ~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 177 PAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 899999999999999999999999999975 488999999973 57789999999975
No 392
>KOG2355|consensus
Probab=99.84 E-value=4.8e-20 Score=175.92 Aligned_cols=215 Identities=20% Similarity=0.308 Sum_probs=158.5
Q ss_pred CccEEEEE-EEEeecccccCceeeeeeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEE
Q psy10223 9 EEEYYLKI-DLQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL 87 (606)
Q Consensus 9 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~ 87 (606)
..+..+++ |+++...+ ..+++-|+|++++.|...+++|.||||||||||+|+|..- .-.|.|.+
T Consensus 9 ~~~~aievsgl~f~y~~--------------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm-v~~~~v~V 73 (291)
T KOG2355|consen 9 VSDFAIEVSGLQFKYKV--------------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM-VGGGVVQV 73 (291)
T ss_pred cccceEEEeccEEeccc--------------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc-ccCCeEEE
Confidence 34566777 66554322 2379999999999999999999999999999999999753 23488999
Q ss_pred CCEeCCc-c--cccCeEEEEcC----------CCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh
Q psy10223 88 DGTPMSP-Q--LFQTTCGYVNH----------RTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154 (606)
Q Consensus 88 ~G~~~~~-~--~~~~~i~yv~q----------~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 154 (606)
+|++.-. . .-.....|+.- +-.+-..+++.+-+ |+.. .... +|-+.+++.+++. .
T Consensus 74 lgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~-----g~dp----~Rre~LI~iLDId--l 141 (291)
T KOG2355|consen 74 LGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVG-----GDDP----ERREKLIDILDID--L 141 (291)
T ss_pred cCcCccccccccccCceeEecccccccccccccccccccccHHHHH-hhcc-----CCCh----hHhhhhhhheecc--c
Confidence 9976421 0 01122333322 11122345555433 4432 1111 3445666766664 2
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEE
Q psy10223 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAY 234 (606)
Q Consensus 155 ~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~v 234 (606)
.-+.+.+|-||||||.|++.|++.-++|+|||-|-.||...+.++++.|++-+++.|.||+..+|- -+.+.+...+++.
T Consensus 142 ~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHI-FDGLe~Wpthl~y 220 (291)
T KOG2355|consen 142 RWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHI-FDGLETWPTHLVY 220 (291)
T ss_pred eEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeee-ccchhhcchhEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999985 4678889999999
Q ss_pred EcCCeEEEecChhHHHH
Q psy10223 235 LCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 235 L~~G~~v~~G~~~~~~~ 251 (606)
++.|+++-.-+.+++.+
T Consensus 221 i~~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 221 IKSGKLVDNLKYQKIKE 237 (291)
T ss_pred ecCCeeeeccccchhhh
Confidence 99999988655555544
No 393
>KOG0060|consensus
Probab=99.83 E-value=6.9e-20 Score=197.30 Aligned_cols=184 Identities=19% Similarity=0.276 Sum_probs=145.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
+..+++|+|++|.+|+-++|.||||||||+|||+|+|+-+ ..+|.+..-...- -+.+-|+||.|.+--. |.||
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp-~~~G~l~k~~~~~-----~~~lfflPQrPYmt~G-TLRd 519 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP-STGGKLTKPTDGG-----PKDLFFLPQRPYMTLG-TLRD 519 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc-cCCCeEEecccCC-----CCceEEecCCCCcccc-chhh
Confidence 4568889999999999999999999999999999999976 5778886432211 1458999999976555 9999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhccc-----------CCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN-----------ISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-----------v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
.+.+....-. ..++....+++.+.|+.++|.|...+. -..||+||+||++.||.+.++|++-+|||.
T Consensus 520 QvIYP~~~~~--~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~ 597 (659)
T KOG0060|consen 520 QVIYPLKAED--MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDEC 597 (659)
T ss_pred eeeccCcccc--ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeech
Confidence 9988743211 112222345677888888887755432 247999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
|+++|......+.+.+|+ .|.|.|-+.|.+ .+.++=|.++-|+.
T Consensus 598 TSAv~~dvE~~~Yr~~r~----~giT~iSVgHRk--SL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 598 TSAVTEDVEGALYRKCRE----MGITFISVGHRK--SLWKFHDYVLRMDG 641 (659)
T ss_pred hhhccHHHHHHHHHHHHH----cCCeEEEeccHH--HHHhhhhEEEEecC
Confidence 999999998888888765 478988888864 57788899998875
No 394
>KOG0062|consensus
Probab=99.83 E-value=4.9e-21 Score=203.73 Aligned_cols=192 Identities=21% Similarity=0.272 Sum_probs=132.5
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCC-CCCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHR-TDLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~-~~~~~~lTV 116 (606)
+.+.+|++-++.+..|..++|+||||+|||||||+|+. |+| .+.+.. +..+. -+++.. +.+....++
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-------~~v--~~f~ve-qE~~g--~~t~~~~~~l~~D~~~ 158 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-------GQV--SGFHVE-QEVRG--DDTEALQSVLESDTER 158 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh-------cCc--CccCch-hheec--cchHHHhhhhhccHHH
Confidence 45789999999999999999999999999999999986 111 111111 11111 112111 112222233
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
.+-+.--..+ .... +..+...++|..+|.++ ...+++++||||-|.|+++||||..+||||+|||||+.||..+
T Consensus 159 ~dfl~~e~~l--~~~~---~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~a 233 (582)
T KOG0062|consen 159 LDFLAEEKEL--LAGL---TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVA 233 (582)
T ss_pred HHHHHhhhhh--hccc---hHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHH
Confidence 3222211111 0001 22233344888999976 4566789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE-EEecChhHHHH
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL-IYAGPTRLMLE 251 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~-v~~G~~~~~~~ 251 (606)
...+.+.|..+ ..|+|+++|+ +..+-+.|..|+.+++=|+ .|-|+-++..+
T Consensus 234 v~WLe~yL~t~----~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 234 VAWLENYLQTW----KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred HHHHHHHHhhC----CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 99999999875 3688888884 6678888888888877665 35576655443
No 395
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=3.3e-20 Score=184.37 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=71.0
Q ss_pred hhcccCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEEecCCcchHHh
Q psy10223 153 VARRNISELTPSEHRRVVIGTQL----VKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS-RAVLLTMEKPRSDVLP 227 (606)
Q Consensus 153 ~~~~~v~~LSgGerqRvsIa~aL----~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g-~tii~t~h~~~~~i~~ 227 (606)
..+..+.+||+|||||+.++.++ +.+|+++++||||+|||+.++..+.+.|++.+++.| .++|+++|+.. ++.+
T Consensus 119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~ 197 (213)
T cd03277 119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLN 197 (213)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCc
Confidence 34567889999999999877554 589999999999999999999999999999876524 57888888754 4566
Q ss_pred cCC--eEEEEcCCe
Q psy10223 228 FLD--RTAYLCLGD 239 (606)
Q Consensus 228 ~~D--~v~vL~~G~ 239 (606)
.+| +|++|++|+
T Consensus 198 ~~~~~~v~~l~~g~ 211 (213)
T cd03277 198 YHEKMTVLCVYNGP 211 (213)
T ss_pred ccCceEEEEEecCc
Confidence 666 788898886
No 396
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.83 E-value=1.6e-20 Score=184.72 Aligned_cols=153 Identities=14% Similarity=0.215 Sum_probs=110.8
Q ss_pred eEEeeEEEEeCCe-EEEEEcCCCccHHHHHHHHH-cCCCCCCee-EEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 42 ILKDISLEVRPGE-VLAVLGSKGSGKRALLEVIS-RRSSGTTRG-EIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 42 iL~~vs~~v~~Ge-~~~IlG~nGsGKSTLLk~L~-g~~~~~~~G-~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
-..++|+++++|+ +++|.||||||||||||+|+ +... ...| .+- ... ...++|..|.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~-~~~G~~vp-----~~~---~~~~~~~~~~----------- 75 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM-AQSGLPIP-----AAE---GSSLPVFENI----------- 75 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH-HHcCCCcc-----ccc---cccCcCccEE-----------
Confidence 3568999999995 89999999999999999988 1111 0111 000 000 0012222221
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
+..++..+..+.....+|+|||||+.|+++ +.+|+++++|||++|||+..+..
T Consensus 76 --------------------------~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~ 128 (200)
T cd03280 76 --------------------------FADIGDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAA 128 (200)
T ss_pred --------------------------EEecCchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHH
Confidence 111222223445567899999999999988 48999999999999999999999
Q ss_pred HHH-HHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 199 IVS-MLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 199 i~~-~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
+.. .++.+.+ .+.++|+++|+ .++.+++|++.+|++|++++.+
T Consensus 129 i~~~~l~~l~~-~~~~vi~~tH~--~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 129 LAIAILEELLE-RGALVIATTHY--GELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHh-cCCEEEEECCH--HHHHHHHhcCCCeEEEEEEEec
Confidence 964 6777764 58899999996 4688999999999999998774
No 397
>KOG0066|consensus
Probab=99.82 E-value=8.5e-20 Score=189.96 Aligned_cols=191 Identities=23% Similarity=0.378 Sum_probs=143.8
Q ss_pred CccEEEEEEEEeecccccC-ceeeee-eccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEE
Q psy10223 9 EEEYYLKIDLQHPALVETG-SCFQRV-FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII 86 (606)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~ 86 (606)
.-+|.+.+-+--+....|. ..++.+ |+..+.++++++++|-|.=...++|+||||.||||||++|.|.+. |..|+.+
T Consensus 567 pKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-P~~GE~R 645 (807)
T KOG0066|consen 567 PKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-PNDGELR 645 (807)
T ss_pred chheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC-CCcchhh
Confidence 3467777644333333332 234433 555577899999999999999999999999999999999999987 6777664
Q ss_pred ECCEeCCcccccCeEEEEcCCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcc-cCCCCCH
Q psy10223 87 LDGTPMSPQLFQTTCGYVNHRTD--LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR-NISELTP 163 (606)
Q Consensus 87 ~~G~~~~~~~~~~~i~yv~q~~~--~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-~v~~LSg 163 (606)
- ..|-+||+..|+.. +-..-|.-|.|.-..+ ++. +.++..|-.+||...+++ .+..|||
T Consensus 646 K--------nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN------lpy----q~ARK~LG~fGL~sHAHTikikdLSG 707 (807)
T KOG0066|consen 646 K--------NHRLRIGWFDQHANEALNGEETPVEYLQRKFN------LPY----QEARKQLGTFGLASHAHTIKIKDLSG 707 (807)
T ss_pred c--------cceeeeechhhhhHHhhccccCHHHHHHHhcC------CCh----HHHHHHhhhhhhhhccceEeeeecCC
Confidence 2 23556888877642 4444566665543322 222 346778899999877776 5899999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q psy10223 164 SEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPR 222 (606)
Q Consensus 164 GerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~ 222 (606)
|||-||++|..-+..|+||||||||++||..+...+.+.++++ ...||+++|+.+
T Consensus 708 GQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHDeR 762 (807)
T KOG0066|consen 708 GQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHDER 762 (807)
T ss_pred cchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecccc
Confidence 9999999999999999999999999999999999999999876 234666678754
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.80 E-value=1.2e-19 Score=190.48 Aligned_cols=171 Identities=25% Similarity=0.368 Sum_probs=125.5
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---cccc-------------C--eEEEEcCCCCCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQ-------------T--TCGYVNHRTDLI 111 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~-------------~--~i~yv~q~~~~~ 111 (606)
.++|++++|+||||-||||-+|+|+|.+. |--|+ +++.+-.+ +.+| . ++..-+|--.+.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~-PNLG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELK-PNLGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccc-cCCCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence 57999999999999999999999999887 33232 22211000 0011 0 122223322222
Q ss_pred CC---CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 112 PS---LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 112 ~~---lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
|. =||+|-|.-.. .+-+.+++++.++|++..|+.+++|||||-|||+||.+++++++++++||||
T Consensus 174 Pk~~KG~v~elLk~~d------------e~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEps 241 (591)
T COG1245 174 PKVVKGKVGELLKKVD------------ERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPS 241 (591)
T ss_pred HHHhcchHHHHHHhhh------------hcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCc
Confidence 21 15555443211 1235688999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
+-||...+....+.+|++++. +++||++-|+. .-+--+.|-|.+++.
T Consensus 242 SyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 242 SYLDIRQRLNAARVIRELAED-GKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred ccccHHHHHHHHHHHHHHhcc-CCeEEEEechH-HHHHHhhheeEEEec
Confidence 999999999999999999974 89999998853 334446788888875
No 399
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.79 E-value=6.1e-19 Score=183.19 Aligned_cols=183 Identities=23% Similarity=0.400 Sum_probs=138.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-------CCeeEEEECCEeCCcccccCeEEEEcCCC-CC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-------TTRGEIILDGTPMSPQLFQTTCGYVNHRT-DL 110 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-------~~~G~I~~~G~~~~~~~~~~~i~yv~q~~-~~ 110 (606)
...+|+|+|++++|||+++|+|+|||||||||++|.|...+ |++|.|.+--.. ..+.+|-+. .-
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~ 466 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEPE 466 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCcccccc
Confidence 35799999999999999999999999999999999986431 566776552211 122333322 12
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch--hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN--VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
|..-|+.|.+.- ... ......++|.+.|+.+ ...++.++||-|||.|+.||.++..+|.+++.||--
T Consensus 467 f~~~tilehl~s--------~tG---D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~ 535 (593)
T COG2401 467 FGEVTILEHLRS--------KTG---DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFA 535 (593)
T ss_pred cCchhHHHHHhh--------ccC---chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhh
Confidence 334455555421 011 1234578899999976 345667999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc-CCeEEEEcCCeEE
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF-LDRTAYLCLGDLI 241 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~-~D~v~vL~~G~~v 241 (606)
+.||+.|+..+.+-|.+++++.|.|+++++|+|. -+-.+ =|+++++.=|.+.
T Consensus 536 AhLD~~TA~rVArkiselaRe~giTlivvThrpE-v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 536 AHLDELTAVRVARKISELAREAGITLIVVTHRPE-VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHhccCCceeEEeeccccc
Confidence 9999999999999999999999999999999872 33344 4888888766543
No 400
>KOG0062|consensus
Probab=99.79 E-value=4.5e-19 Score=188.90 Aligned_cols=187 Identities=21% Similarity=0.287 Sum_probs=147.0
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
+++++++..++.-+..+++|+||+||||+||++.|... +.+|.+... .|.+++|-.|...-+-.+.|.+ +
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~-~~rgi~~~~--------~r~ri~~f~Qhhvd~l~~~v~~-v 447 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT-PTRGIVGRH--------PRLRIKYFAQHHVDFLDKNVNA-V 447 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC-cccceeeec--------ccceecchhHhhhhHHHHHhHH-H
Confidence 79999999999999999999999999999999999877 567766543 2567888888754333344433 3
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
.+..+.+ ++.. ++.++.-+..+||+ +.+...+.+||||||-||++|.....+|.+|+|||||+.||-.+-..+
T Consensus 448 d~~~~~~--pG~~----~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL 521 (582)
T KOG0062|consen 448 DFMEKSF--PGKT----EEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGAL 521 (582)
T ss_pred HHHHHhC--CCCC----HHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHH
Confidence 3333332 2233 34577889999997 456666999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEE-ecChhH
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIY-AGPTRL 248 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~-~G~~~~ 248 (606)
.+.|+.. .| .||+++|+ .+.+-.+|+.+++.++|++.- .|...+
T Consensus 522 ~~Al~~F---~G-GVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ieg~~~~ 566 (582)
T KOG0062|consen 522 AKALKNF---NG-GVVLVSHD-EEFISSLCKELWVVEDGKVTPIEGGIDK 566 (582)
T ss_pred HHHHHhc---CC-cEEEEECc-HHHHhhcCceeEEEcCCcEEeeeccHHH
Confidence 9999876 23 45666675 467899999999999999864 344433
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.78 E-value=1.6e-18 Score=167.45 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc
Q psy10223 161 LTPSEHRRVVIGTQLV----KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 161 LSgGerqRvsIa~aL~----~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~ 236 (606)
||+|||||++||++++ .+|+++++|||+++||+..+..+.+.|+++++. |.++|+++|++ +..+.+|+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~--~~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKK--EMFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCH--HHHhhCCeEEEEE
Confidence 9999999999999996 699999999999999999999999999998754 78999999975 4567899999997
Q ss_pred C
Q psy10223 237 L 237 (606)
Q Consensus 237 ~ 237 (606)
+
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 6
No 402
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.77 E-value=4.2e-19 Score=177.52 Aligned_cols=154 Identities=16% Similarity=0.206 Sum_probs=115.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEE-EEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG-YVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~-yv~q~~~~~~~lTV~ 117 (606)
.+.+.+|+++..++|++++|.||||+||||||++++-. .+..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-------------------~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-------------------VLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-------------------HHHHHhCCCcCcccEEEe-----
Confidence 34689999999999999999999999999999998721 0111122 3333221111
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCC
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQL--VKDPVLLLLDEP---TVNLD 192 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL--~~~p~llllDEP---TsgLD 192 (606)
.+++++..+++.+ ...+++|.|+++++.+++++ +.+|+++++||| |++||
T Consensus 72 ----------------------~~~~il~~~~l~d---~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD 126 (222)
T cd03285 72 ----------------------IVDCILARVGASD---SQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD 126 (222)
T ss_pred ----------------------ccceeEeeecccc---chhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence 1233445556553 23678999999999999999 899999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecC
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGP 245 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~ 245 (606)
+...... .++.+.++.+.++|+++|. .++.+++|++..+++|++...++
T Consensus 127 ~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 127 GFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 9888543 3344544457899999995 57899999999999999987764
No 403
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.76 E-value=2.8e-18 Score=163.31 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc
Q psy10223 161 LTPSEHRRVVIGTQLVK----DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 161 LSgGerqRvsIa~aL~~----~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~ 236 (606)
||+||+||+++|++|.. +|+++++|||++|+|+..+..+.+.+.++.++ +.++|+++|++ ++.+.+|+++.|+
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 99999999999999987 78999999999999999999999999998765 88999999975 4667899999986
Q ss_pred C
Q psy10223 237 L 237 (606)
Q Consensus 237 ~ 237 (606)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 404
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.76 E-value=1.2e-18 Score=171.27 Aligned_cols=147 Identities=17% Similarity=0.196 Sum_probs=106.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+++|+++.. |++++|+||||||||||||+|+|... +...|.++... .++.|.+.+++.+|+.|+
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI------LAQAGAPVCAS------SFELPPVKIFTSIRVSDD 79 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH------HHHcCCEEecC------ccCcccceEEEeccchhc
Confidence 46888887765 79999999999999999999987532 11234433211 255667789999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+.++.. ....+ .+++.++++.+++ .+|+++++||||+|||+..+..+
T Consensus 80 l~~~~s------~~~~e-~~~~~~iL~~~~~--------------------------~~p~llllDEp~~glD~~~~~~l 126 (199)
T cd03283 80 LRDGIS------YFYAE-LRRLKEIVEKAKK--------------------------GEPVLFLLDEIFKGTNSRERQAA 126 (199)
T ss_pred cccccC------hHHHH-HHHHHHHHHhccC--------------------------CCCeEEEEecccCCCCHHHHHHH
Confidence 977542 11222 3567888887763 79999999999999999999887
Q ss_pred HH-HHHHHHHhCCcEEEEEecCCcchHHhc--CCeEEEE
Q psy10223 200 VS-MLSSYAKRKSRAVLLTMEKPRSDVLPF--LDRTAYL 235 (606)
Q Consensus 200 ~~-~L~~l~~~~g~tii~t~h~~~~~i~~~--~D~v~vL 235 (606)
.. .++.+.+ .+.++|+++|++. .+..+ .++|..+
T Consensus 127 ~~~ll~~l~~-~~~tiiivTH~~~-~~~~~~~~~~v~~~ 163 (199)
T cd03283 127 SAAVLKFLKN-KNTIGIISTHDLE-LADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHH-CCCEEEEEcCcHH-HHHhhhcCCCeEEE
Confidence 54 6788765 5889999999753 34333 4455444
No 405
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=8.1e-18 Score=173.79 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=68.4
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEE
Q psy10223 159 SELTPSEHRRVVIGTQLVK----DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAY 234 (606)
Q Consensus 159 ~~LSgGerqRvsIa~aL~~----~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~v 234 (606)
..||||||||+++|++++. +|+++++||||++||+..+..+.+.|+++++ +.++|+++|++. +.+.+|++++
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~--~~~~~d~~~~ 244 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQ--VAAMADNHFL 244 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHH--HHHhcCcEEE
Confidence 3499999999999987654 9999999999999999999999999999864 689999999864 6789999999
Q ss_pred EcCCe
Q psy10223 235 LCLGD 239 (606)
Q Consensus 235 L~~G~ 239 (606)
|.+|+
T Consensus 245 l~~~~ 249 (276)
T cd03241 245 VEKEV 249 (276)
T ss_pred EEEec
Confidence 98864
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.74 E-value=5.8e-17 Score=197.64 Aligned_cols=127 Identities=22% Similarity=0.290 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKD---PVLLLLDEPT 188 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~---p~llllDEPT 188 (606)
.|||.|.+.|... . .+..+.-+.|.++||... +.++...|||||.||+.||..|..+ +.+++|||||
T Consensus 1660 ~mtv~ea~~~F~~------~---~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt 1730 (1809)
T PRK00635 1660 QTPIEEVAETFPF------L---KKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIA 1730 (1809)
T ss_pred cCCHHHHHHHhhc------c---HHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCC
Confidence 3677776666432 1 123455678889999764 5788899999999999999999876 7899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC------CeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL------GDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~------G~~v~~G~~~~~~~ 251 (606)
+||++.....+++.|+++.+ .|.|||++.|++ ++.+.+|.++=|-. |++|+.|+++++.+
T Consensus 1731 ~GLh~~d~~~Ll~~l~~L~~-~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1731 TSLDNQQKSALLVQLRTLVS-LGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999986 588999998875 68888999999853 79999999999864
No 407
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.72 E-value=1.3e-16 Score=177.73 Aligned_cols=127 Identities=25% Similarity=0.355 Sum_probs=105.4
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDP---VLLLLDEPT 188 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p---~llllDEPT 188 (606)
.|||.|...|.... + ...+.-+.|.++||.-. +.+....|||||.|||-+|..|..+. .+++|||||
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPT 853 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPT 853 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCC
Confidence 36777777765531 1 23445677888898753 56778899999999999999999888 999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc------CCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC------LGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~------~G~~v~~G~~~~~~~ 251 (606)
+||-.....++++.|.++.+ .|-|||++-|. -++.+.+|.|+=|- .|++|..|+|+++.+
T Consensus 854 TGLH~~Di~kLl~VL~rLvd-~GnTViVIEHN--LdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 854 TGLHFDDIKKLLEVLHRLVD-KGNTVIVIEHN--LDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecc--cceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999999999999999987 58899998775 37999999999883 479999999999875
No 408
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.71 E-value=5.1e-17 Score=190.52 Aligned_cols=136 Identities=18% Similarity=0.340 Sum_probs=110.4
Q ss_pred CCCCCHHHHHHHHHHccCCCC---CC---HHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCC--CE
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQ---VS---RYVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDP--VL 181 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p--~l 181 (606)
+-.+||.|.+.|.-.+..... .. -.+..++++ .|+.+||.+. .|+.+.+|||||||||.||++|..+| ++
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~l 512 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 512 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcE
Confidence 346899999998544321110 00 012234443 6788899876 79999999999999999999999997 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHH
Q psy10223 182 LLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLML 250 (606)
Q Consensus 182 lllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~ 250 (606)
++|||||+|||+..+..+.+.|+++.+ .|.|||+++|++. ++ ..+|+|++| ++|++++.|+++++.
T Consensus 513 lILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 513 YVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 999999999999999999999999975 5899999999864 45 469999999 999999999998874
No 409
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=7.9e-17 Score=188.59 Aligned_cols=135 Identities=19% Similarity=0.318 Sum_probs=108.1
Q ss_pred CCCCHHHHHHHHHHccCCCCCCH------HHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCC--CEE
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSR------YVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDP--VLL 182 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p--~ll 182 (606)
-.|||.|.+.|...+........ .+..++ -+.|..+||... .++.+.+|||||+|||.||++|+.+| +++
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~r-l~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ll 511 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKER-LGFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLY 511 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 46899999888766432110000 011122 234677899765 79999999999999999999999986 899
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHH
Q psy10223 183 LLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLML 250 (606)
Q Consensus 183 llDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~ 250 (606)
+|||||+|||+..+..+.+.|+++.+ .|.|||+++|++ +.+ ..||+|++| ++|++++.|+++++.
T Consensus 512 ILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 512 VLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 99999999999999999999999976 589999999985 344 589999999 899999999998874
No 410
>KOG0064|consensus
Probab=99.70 E-value=4e-17 Score=173.92 Aligned_cols=164 Identities=18% Similarity=0.288 Sum_probs=123.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
..++..++|+|++|-.++|+||||||||+|.|+|+|+-+ . ++|.-..+ .+..+-|+||.|..- .-|.+|.
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP-v------y~g~L~~P--~~~~mFYIPQRPYms-~gtlRDQ 564 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP-V------YNGLLSIP--RPNNIFYIPQRPYMS-GGTLRDQ 564 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCc-c------cCCeeecC--CCcceEeccCCCccC-cCcccce
Confidence 457899999999999999999999999999999999975 3 44443222 234589999998654 3466666
Q ss_pred HHHHHHc---cCCCCCCHHHHHHHHHHHHHHcCCchhhcccC---------CCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 120 LYYAAHL---SIGPQVSRYVRNARIRQVLADLALSNVARRNI---------SELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 120 l~f~~~~---~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v---------~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
+-+.-.. + .++.+ ++..+.+|+.+.|++...+-. .-||||||||+.+||.+-++|+.-+|||-
T Consensus 565 IIYPdS~e~~~-~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEc 639 (728)
T KOG0064|consen 565 IIYPDSSEQMK-RKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDEC 639 (728)
T ss_pred eecCCcHHHHH-hcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhh
Confidence 5543110 0 01222 244667777777777665543 36999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPR 222 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~ 222 (606)
|++..+.....+.+..+ ..|.+.+-++|+|+
T Consensus 640 TsAvsidvE~~i~~~ak----~~gi~llsithrps 670 (728)
T KOG0064|consen 640 TSAVSIDVEGKIFQAAK----DAGISLLSITHRPS 670 (728)
T ss_pred hcccccchHHHHHHHHH----hcCceEEEeecCcc
Confidence 99998877777666654 46889999999986
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.69 E-value=2.9e-17 Score=161.90 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=102.6
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAA 124 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~ 124 (606)
..++++.+|++++|+||||||||||||+|++..--...|... .. .+..+++..| ++..++..++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~------~~--~~~~i~~~dq---i~~~~~~~d~----- 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV------PA--ESASIPLVDR---IFTRIGAEDS----- 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc------cc--cccccCCcCE---EEEEecCccc-----
Confidence 344556689999999999999999999999532101112110 00 1122333222 1222222211
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HH
Q psy10223 125 HLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS-ML 203 (606)
Q Consensus 125 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~-~L 203 (606)
.+...+.++.++ ||++.+.+++.+|+++++||||+|||+.....+.. ++
T Consensus 85 -----------------------------i~~~~s~~~~e~-~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll 134 (202)
T cd03243 85 -----------------------------ISDGRSTFMAEL-LELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVL 134 (202)
T ss_pred -----------------------------ccCCceeHHHHH-HHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHH
Confidence 112223445444 45777788899999999999999999999888765 45
Q ss_pred HHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhH
Q psy10223 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRL 248 (606)
Q Consensus 204 ~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~ 248 (606)
+.+.+ .+.++|+++|++ ++.+.+|++..+..|++...++..+
T Consensus 135 ~~l~~-~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 135 EHLLE-KGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHh-cCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 65554 588999999864 6788999999999999988876544
No 412
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.66 E-value=1.7e-16 Score=156.61 Aligned_cols=141 Identities=21% Similarity=0.266 Sum_probs=99.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEE-EEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG-YVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~-yv~q~~~~~~~lTV~ 117 (606)
++.+.+|+++.+++|++++|+||||+|||||||+|++..- ..++| ++ +...+.+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------------------la~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------------------MAQIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------------------HHHcCCCc---chhhcCccCh
Confidence 4579999999999999999999999999999999987631 00111 11 2223445555
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
|++.. .++..+..++..+.+|+|++|+ +.+.+++++|+++++|||++|+|+....
T Consensus 73 d~I~~------------------------~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~ 127 (204)
T cd03282 73 NRLLS------------------------RLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGF 127 (204)
T ss_pred hheeE------------------------ecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHH
Confidence 55532 2233333345567889888865 5666788999999999999999998866
Q ss_pred HHH-HHHHHHHHhCCcEEEEEecCCcchHHhcC
Q psy10223 198 LIV-SMLSSYAKRKSRAVLLTMEKPRSDVLPFL 229 (606)
Q Consensus 198 ~i~-~~L~~l~~~~g~tii~t~h~~~~~i~~~~ 229 (606)
.+. ..++.+.+ .+.++|+++|.. ++.+.+
T Consensus 128 ~l~~~il~~l~~-~~~~~i~~TH~~--~l~~~~ 157 (204)
T cd03282 128 AISLAILECLIK-KESTVFFATHFR--DIAAIL 157 (204)
T ss_pred HHHHHHHHHHHh-cCCEEEEECChH--HHHHHh
Confidence 654 45666665 489999999964 344443
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=1.9e-15 Score=155.66 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=62.8
Q ss_pred CCCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc
Q psy10223 158 ISELTPSEHRRVVIGTQLV---------KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF 228 (606)
Q Consensus 158 v~~LSgGerqRvsIa~aL~---------~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~ 228 (606)
..-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++ +.++| ++|+. .++.++
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~q~ii-~~~~~-~~~~~~ 254 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----VQTFV-TTTDL-ADFDAL 254 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----CCEEE-EeCCc-hhccch
Confidence 4568999999999999985 799999999999999999999999999764 23444 44543 356666
Q ss_pred C---CeEEEEcCCeE
Q psy10223 229 L---DRTAYLCLGDL 240 (606)
Q Consensus 229 ~---D~v~vL~~G~~ 240 (606)
+ ++++.+++|++
T Consensus 255 ~~~~~~i~~l~~g~i 269 (270)
T cd03242 255 WLRRAQIFRVDAGTL 269 (270)
T ss_pred hccCccEEEEeCcEE
Confidence 6 78999999985
No 414
>KOG0063|consensus
Probab=99.62 E-value=3.5e-15 Score=155.90 Aligned_cols=179 Identities=20% Similarity=0.320 Sum_probs=136.9
Q ss_pred ceeeEEeeEEEEeCC-----eEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPG-----EVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~G-----e~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~ 113 (606)
-+.-+.++.+.|+.| |++..+|.||.|||||++.++|++++...|+|-. -.++|=+|.-.--..
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~-----------lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV-----------LNVSYKPQKISPKRE 416 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc-----------cceeccccccCcccc
Confidence 345677888888877 5789999999999999999999987333344422 235565665443345
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
-||++.+.--.+ +.....+-+.++++-|.+++..|+.+.+|||||+|||+||..|=..+++++.|||.+-||+
T Consensus 417 ~tvR~ll~~kIr-------~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDS 489 (592)
T KOG0063|consen 417 GTVRQLLHTKIR-------DAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDS 489 (592)
T ss_pred chHHHHHHHHhH-------hhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcCh
Confidence 689987754322 1112335678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~ 236 (606)
..+..--+.+++.--..++|-.++-|+-. -.--++|||++..
T Consensus 490 eQRi~AskvikRfilhakktafvVEhdfI-maTYladrvivf~ 531 (592)
T KOG0063|consen 490 EQRIIASKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVFE 531 (592)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhhhHHH-HHHhhcceeEEEe
Confidence 99999999998875556778888877422 2234688887654
No 415
>KOG0066|consensus
Probab=99.60 E-value=2.2e-16 Score=164.76 Aligned_cols=205 Identities=22% Similarity=0.296 Sum_probs=141.8
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CCCeeEEEECCEeCCc-------ccc---cCeEEEEcC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GTTRGEIILDGTPMSP-------QLF---QTTCGYVNH 106 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~~~G~I~~~G~~~~~-------~~~---~~~i~yv~q 106 (606)
..+.++.|-|+.|-.|..++++||||-||||||+-|+.+-- -|..=+|++-.+.+-. ..+ .++...+.+
T Consensus 275 ~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLee 354 (807)
T KOG0066|consen 275 QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEE 354 (807)
T ss_pred ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHH
Confidence 34678899999999999999999999999999999997631 1222234443332210 000 011111111
Q ss_pred CCC-----CCCCCCHHHHHHHH-HHccCCCCCCHHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCC
Q psy10223 107 RTD-----LIPSLTVEQTLYYA-AHLSIGPQVSRYVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDP 179 (606)
Q Consensus 107 ~~~-----~~~~lTV~e~l~f~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p 179 (606)
++. --...|+.|-|.-. ..++. +.....+.+++.+|.-+|.++- .+++....|||-|.||++||||...|
T Consensus 355 e~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEP 431 (807)
T KOG0066|consen 355 EAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEP 431 (807)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCc
Confidence 110 11235666655432 22221 1222345678899999999864 56667899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-EecChhHHH
Q psy10223 180 VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAGPTRLML 250 (606)
Q Consensus 180 ~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G~~~~~~ 250 (606)
.+|.|||||+.||......+-+.|..|. +|.++++|+. ..+-+.|..|+.|++-++- |.|+-...+
T Consensus 432 TLLMLDEPTNHLDLNAVIWLdNYLQgWk----KTLLIVSHDQ-gFLD~VCtdIIHLD~qkLhyYrGNY~~FK 498 (807)
T KOG0066|consen 432 TLLMLDEPTNHLDLNAVIWLDNYLQGWK----KTLLIVSHDQ-GFLDSVCTDIIHLDNQKLHYYRGNYTLFK 498 (807)
T ss_pred eeeeecCCccccccceeeehhhHHhhhh----heeEEEeccc-chHHHHHHHHhhhhhhhhhhhcchHHHHH
Confidence 9999999999999999999999998874 4778877864 4788899999999987764 446544433
No 416
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=99.58 E-value=9.8e-16 Score=134.44 Aligned_cols=63 Identities=29% Similarity=0.535 Sum_probs=58.4
Q ss_pred CCCCCCccCC--hhHHHhhhcCCCCCcccccceeeechhhhhhhhhCCCCCCcccccccccchhHHHHHHHHHHhhc
Q psy10223 529 PHPFGCRYTD--GASFLSERYGHETGDFSFFITKYTDGASFLSERYGHETGDFSLSDVLDSNFNMTITLSFAFTLMD 603 (606)
Q Consensus 529 ~~~~~c~y~~--g~~~l~~~~g~~~g~~~~~~~~~v~g~~y~~~~~~~~~~~~~~~~~wr~n~gi~~~~~~~~~~~~ 603 (606)
.+|.|++|++ ++++.|+..|+.+| +.+|+||+||+.+|+ |+++|+|| ||||+++|+++|+++.
T Consensus 2 ~iP~Gp~Y~~~~~~~q~C~~~Ga~~G------~~~V~G~~YL~~~y~-----y~~sh~WR-N~GIli~f~i~f~~~~ 66 (103)
T PF06422_consen 2 LIPSGPGYDNISPANQVCAVVGAQPG------STYVSGDDYLEESYG-----YSYSHRWR-NFGILIAFWIFFIVLT 66 (103)
T ss_pred cCCCCCCCCCCCCCcCccCCCCCCCC------ccEEeHHHHHhhhcc-----ccccchhh-hHHHHHHHHHHHHHHH
Confidence 4789999998 56999999999999 669999999999999 99999999 9999999999999863
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.58 E-value=3.6e-15 Score=148.55 Aligned_cols=159 Identities=14% Similarity=0.151 Sum_probs=106.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+.+|+++..++ ++++|.||||||||||||+|++..- -|+ .|..+.. .+..++++.| +++.+++.|+
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~---l~~---~g~~vp~--~~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIAL---LAQ---IGSFVPA--SKAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHH---Hhc---cCCeecc--ccceecceee---EeccCCchhh
Confidence 4689999999987 9999999999999999999986431 011 1222211 1345666643 5678888887
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC---CCCCCHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP---TVNLDPLST 196 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP---TsgLD~~~~ 196 (606)
+..+. +.. ..|+++++-+...+.+|+++++||| |++||....
T Consensus 86 ls~g~--------s~f---------------------------~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~ 130 (216)
T cd03284 86 LAGGR--------STF---------------------------MVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI 130 (216)
T ss_pred hccCc--------chH---------------------------HHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Confidence 75321 110 1223333333444679999999999 888887652
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
....++.+.+..+.++|+++|+. ++.+++|++.-+.+|++...+..+++
T Consensus 131 --~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 131 --AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred --HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 23344444443478899999974 78889998888888888776665554
No 418
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.54 E-value=1.7e-14 Score=147.84 Aligned_cols=139 Identities=14% Similarity=0.103 Sum_probs=96.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIG 129 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~ 129 (606)
.-++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ..+.+.+++++|.+ +.+.++|.++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~-~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~-------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS-TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP-------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC-CCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch--------
Confidence 5789999999999999999999987 788999999998742 23445567778864 344555554421
Q ss_pred CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q psy10223 130 PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209 (606)
Q Consensus 130 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~ 209 (606)
+ .+ | .....+..+|+++++|||++ ...+..+++.+ +
T Consensus 182 ----k---~~------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~- 217 (270)
T TIGR02858 182 ----K---AE------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-H- 217 (270)
T ss_pred ----H---HH------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-h-
Confidence 0 00 0 02223336999999999974 23344455554 3
Q ss_pred CCcEEEEEecCCcch-H-----------HhcCCeEEEEcCCeEEEecChhH
Q psy10223 210 KSRAVLLTMEKPRSD-V-----------LPFLDRTAYLCLGDLIYAGPTRL 248 (606)
Q Consensus 210 ~g~tii~t~h~~~~~-i-----------~~~~D~v~vL~~G~~v~~G~~~~ 248 (606)
.|.++|+|+|.+..+ + ...|||+++|++|+ ..|.+++
T Consensus 218 ~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~ 266 (270)
T TIGR02858 218 AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEA 266 (270)
T ss_pred CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceee
Confidence 489999999965332 2 26799999999887 5555544
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.47 E-value=4.9e-14 Score=137.07 Aligned_cols=89 Identities=13% Similarity=0.103 Sum_probs=61.5
Q ss_pred CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEecCCcchHHh
Q psy10223 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV-SMLSSYAKRKSRAVLLTMEKPRSDVLP 227 (606)
Q Consensus 149 gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~-~~L~~l~~~~g~tii~t~h~~~~~i~~ 227 (606)
++.+..++..+.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++.+.++|+++|++ ++.+
T Consensus 50 ~~~d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~ 126 (185)
T smart00534 50 GASDSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTK 126 (185)
T ss_pred CCCCchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHH
Confidence 3333445566788888776444333 34599999999999999999888865 556666653478899999975 5788
Q ss_pred cCCeEEEEcCCeE
Q psy10223 228 FLDRTAYLCLGDL 240 (606)
Q Consensus 228 ~~D~v~vL~~G~~ 240 (606)
++|+---+..++.
T Consensus 127 ~~~~~~~v~~~~~ 139 (185)
T smart00534 127 LADEHPGVRNLHM 139 (185)
T ss_pred HhhcCccceEEEE
Confidence 8875333333443
No 420
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.44 E-value=4.6e-15 Score=144.83 Aligned_cols=160 Identities=28% Similarity=0.378 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchhH
Q psy10223 349 SRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTD 428 (606)
Q Consensus 349 ~r~g~lf~~~~~~~f~~~~~~i~~~~~~R~i~~re~~~~~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~~ 428 (606)
++.|++++.+...++............+|..+.||+..+.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~ 129 (210)
T PF01061_consen 51 NRPGLIFGSIIFSFFSSISGSSISFERERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE-S 129 (210)
T ss_pred ccceeeehhhHHhhhhhcccchhhhhhhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc-c
Confidence 456666666655554444444467789999999999999999999999999999999999999999999999998765 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHHHH
Q psy10223 429 LFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQ 508 (606)
Q Consensus 429 ~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~n 508 (606)
++.+++.++++..++.+++..+++.+++...+......+ ...+++++|.+.|.+.+|+|++|+.|+||++|+.|++..+
T Consensus 130 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~ 208 (210)
T PF01061_consen 130 FFLFLLILLLSILCSSGLGLLLAALFPSFRDASAISSLI-LLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAA 208 (210)
T ss_pred chheecccccccccccccccccccchhhhhhhhhhhhhc-ccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666777777788887777766555555444 4566788999999999999999999999999999999877
Q ss_pred hc
Q psy10223 509 MF 510 (606)
Q Consensus 509 ef 510 (606)
+|
T Consensus 209 ~f 210 (210)
T PF01061_consen 209 LF 210 (210)
T ss_pred HC
Confidence 65
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.42 E-value=8.3e-12 Score=133.84 Aligned_cols=77 Identities=17% Similarity=0.263 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcC
Q psy10223 159 SELTPSEHRRVVIGTQLV---------KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFL 229 (606)
Q Consensus 159 ~~LSgGerqRvsIa~aL~---------~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~ 229 (606)
..+|.||+|++.||+.|+ .+|+|+++|||+++||+..+..+++.|.++ +..+++|+|++. .+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~-~~~~~~ 346 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLE-DLADLL 346 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChh-hhhhhh
Confidence 479999999999999886 799999999999999999999999988753 346777777653 444553
Q ss_pred --CeEEEEcCCeE
Q psy10223 230 --DRTAYLCLGDL 240 (606)
Q Consensus 230 --D~v~vL~~G~~ 240 (606)
+++..+++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 57999999986
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.38 E-value=1.1e-13 Score=138.02 Aligned_cols=88 Identities=20% Similarity=0.322 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q psy10223 139 ARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV----KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214 (606)
Q Consensus 139 ~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~----~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~ti 214 (606)
+.+.+.+...++... .+|||||.+++||.-|+ .++++++||||.++||...+..+.++|+++.+ +.-+
T Consensus 121 ~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ 192 (220)
T PF02463_consen 121 KDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQF 192 (220)
T ss_dssp HHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEE
T ss_pred ccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccc
Confidence 345566665555432 89999999999997653 46889999999999999999999999999864 3567
Q ss_pred EEEecCCcchHHhcCCeEEEEc
Q psy10223 215 LLTMEKPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 215 i~t~h~~~~~i~~~~D~v~vL~ 236 (606)
|+++|++ .+++.+|+.+.+.
T Consensus 193 ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 193 IITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp EEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccc--ccccccccccccc
Confidence 7888874 6899999988764
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.37 E-value=2.5e-12 Score=127.88 Aligned_cols=132 Identities=16% Similarity=0.167 Sum_probs=85.2
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCC-CCCCHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLI-PSLTVEQT 119 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~-~~lTV~e~ 119 (606)
.+=+|+++.=..+..++|.||||+|||||||.|+....-...|..... -...++|..|....+ ...++.+.
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a--------~~~~~~~~d~i~~~l~~~~si~~~ 88 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPA--------DSATIGLVDKIFTRMSSRESVSSG 88 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEc--------CCcEEeeeeeeeeeeCCccChhhc
Confidence 455566654222379999999999999999999832100123433221 123456665543211 11122111
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELT--PSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LS--gGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
+| .-|.||++++++++.+|+++++|||++|+|+....
T Consensus 89 -----------------------------------------~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~ 127 (213)
T cd03281 89 -----------------------------------------QSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGA 127 (213)
T ss_pred -----------------------------------------cchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHH
Confidence 12 34678999999999999999999999999997655
Q ss_pred HH-HHHHHHHHHhC--CcEEEEEecCC
Q psy10223 198 LI-VSMLSSYAKRK--SRAVLLTMEKP 221 (606)
Q Consensus 198 ~i-~~~L~~l~~~~--g~tii~t~h~~ 221 (606)
.+ ...++.+.+.. +.++|+++|.+
T Consensus 128 ~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 128 GLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 54 56888886531 35788888864
No 424
>KOG0063|consensus
Probab=99.35 E-value=2.7e-12 Score=134.54 Aligned_cols=187 Identities=22% Similarity=0.285 Sum_probs=126.9
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccC-----e----------EEEEcCCCCCCCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQT-----T----------CGYVNHRTDLIPS 113 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~-----~----------i~yv~q~~~~~~~ 113 (606)
+||++++++|.||-||||-||+++|..+++. |.-. ++.+..+ ..+|. . ...-+|.-..+|.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnl-g~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL-GRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCC-CCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence 6899999999999999999999999987432 2110 1100000 00110 0 0000111111111
Q ss_pred ---CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 114 ---LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 114 ---lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
.+|+++| .+...++..+++++.+.|.+..++.+..|||||-||.+||.+.+.++++..+|||.+-
T Consensus 176 ~~k~~v~~~l------------~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsY 243 (592)
T KOG0063|consen 176 AVKGTVGSLL------------DRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSY 243 (592)
T ss_pred HHHHHHHHHH------------HHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCccc
Confidence 1222222 1222334567888999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC-----CeEEEecChhHHHHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL-----GDLIYAGPTRLMLEYF 253 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~-----G~~v~~G~~~~~~~~f 253 (606)
||...+..-...+|.+.. ..+=+|++-|+.+ -+--+.|-+++|+. |-+..--+.++....|
T Consensus 244 LDVKQRLkaA~~IRsl~~-p~~YiIVVEHDLs-VLDylSDFiCcLYGvp~aYGVVT~Pfsvr~giniF 309 (592)
T KOG0063|consen 244 LDVKQRLKAAITIRSLIN-PDRYIIVVEHDLS-VLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIF 309 (592)
T ss_pred chHHHhhhHHHHHHHhhC-CCCeEEEEEeech-HHHhhhcceeEEecCCccceEEEeccchhhhhhhh
Confidence 999999999999999976 4677888777643 34445688888875 3444434455555555
No 425
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.34 E-value=1.9e-12 Score=150.27 Aligned_cols=131 Identities=20% Similarity=0.263 Sum_probs=88.9
Q ss_pred eEEEEeCC-eEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHH
Q psy10223 46 ISLEVRPG-EVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAA 124 (606)
Q Consensus 46 vs~~v~~G-e~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~ 124 (606)
+|+.+.+| ++++|.||||+|||||||+|+|..-.+..| ..+... ....++|..|...
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G------~~Vpa~-~~~~~~~~d~i~~--------------- 371 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG------IPIPAN-EHSEIPYFEEIFA--------------- 371 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC------CCccCC-ccccccchhheee---------------
Confidence 68888877 999999999999999999999862101222 111000 0011222111100
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHH
Q psy10223 125 HLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV-SML 203 (606)
Q Consensus 125 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~-~~L 203 (606)
. + +........++.+|+|+++++.|++.+ .+|+++++|||++|+|+.....+. .+|
T Consensus 372 ~------i----------------~~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiL 428 (771)
T TIGR01069 372 D------I----------------GDEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISIL 428 (771)
T ss_pred e------c----------------ChHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHH
Confidence 0 0 001111233567999999999998876 899999999999999999999984 677
Q ss_pred HHHHHhCCcEEEEEecCCc
Q psy10223 204 SSYAKRKSRAVLLTMEKPR 222 (606)
Q Consensus 204 ~~l~~~~g~tii~t~h~~~ 222 (606)
+.+.+ .|.++|+++|+..
T Consensus 429 e~l~~-~g~~viitTH~~e 446 (771)
T TIGR01069 429 EYLLK-QNAQVLITTHYKE 446 (771)
T ss_pred HHHHh-cCCEEEEECChHH
Confidence 77765 5888999999753
No 426
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.34 E-value=1.6e-12 Score=114.40 Aligned_cols=74 Identities=14% Similarity=0.134 Sum_probs=61.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
..+|+++++++++||+++|+||||||||||++++. +|++.++|.++.. ...++.+++++|+ ++ .-|+
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~ti 71 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EIRL 71 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hhhH
Confidence 46899999999999999999999999999999986 5889999988743 2345567777777 33 3589
Q ss_pred HHHHHHH
Q psy10223 117 EQTLYYA 123 (606)
Q Consensus 117 ~e~l~f~ 123 (606)
+|||.++
T Consensus 72 ~~Ni~~~ 78 (107)
T cd00820 72 RLNIFLI 78 (107)
T ss_pred Hhhceee
Confidence 9999874
No 427
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.30 E-value=2e-11 Score=122.00 Aligned_cols=142 Identities=15% Similarity=0.163 Sum_probs=87.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+.+|+++.+++|++++|.||||+||||+||+|++..--+..|...... ..+-..+.+-..-+...|.+...+
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~~~~~~~~i~~~~~~~d~~~~~~----- 91 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SATLSIFDSVLTRMGASDSIQHGM----- 91 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ceEEeccceEEEEecCcccccccc-----
Confidence 46899999999999999999999999999999999842113446544321 111011111112222222211111
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+. . ..|-+|++-...-+.+|+++++|||.+|.|+.....+
T Consensus 92 -------------St--F-------------------------~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i 131 (222)
T cd03287 92 -------------ST--F-------------------------MVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAI 131 (222)
T ss_pred -------------ch--H-------------------------HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHH
Confidence 00 0 1222333333334678999999999999997777764
Q ss_pred -HHHHHHHHHhCCcEEEEEecCCcchHHhcC
Q psy10223 200 -VSMLSSYAKRKSRAVLLTMEKPRSDVLPFL 229 (606)
Q Consensus 200 -~~~L~~l~~~~g~tii~t~h~~~~~i~~~~ 229 (606)
...++.+.+..+.++|+++|.+ ++.++.
T Consensus 132 ~~~il~~l~~~~~~~~i~~TH~~--~l~~~~ 160 (222)
T cd03287 132 AYATLHYLLEEKKCLVLFVTHYP--SLGEIL 160 (222)
T ss_pred HHHHHHHHHhccCCeEEEEcccH--HHHHHH
Confidence 5667777654578999999975 344443
No 428
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.30 E-value=3.7e-12 Score=126.48 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q psy10223 164 SEHRRVVIGTQLVKDPVLLLLDEPT-----VNLDPLSTYLIVSMLSSYAK 208 (606)
Q Consensus 164 GerqRvsIa~aL~~~p~llllDEPT-----sgLD~~~~~~i~~~L~~l~~ 208 (606)
-|++++.||++++.+|+++++|||| +|||+.++.++.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999874
No 429
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.26 E-value=1.7e-10 Score=125.88 Aligned_cols=173 Identities=18% Similarity=0.244 Sum_probs=111.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeC---C--------cccccCeEEEEcCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---S--------PQLFQTTCGYVNHRT 108 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~---~--------~~~~~~~i~yv~q~~ 108 (606)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+ +..|.|.+.|+.- . ...+++.++++.+.+
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS-ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC-CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 4689999 9999999999999999999999999999987 6789999865433 2 112566788887654
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch--hhcccCCCCCH-HHHHH-HHHHHHHhhCCCEEEE
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN--VARRNISELTP-SEHRR-VVIGTQLVKDPVLLLL 184 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~v~~LSg-GerqR-vsIa~aL~~~p~llll 184 (606)
.- +.+-+.-+ . ..-.+.|.+.+-|..- ..| +++- -+-+| +++ .+
T Consensus 224 ~~-----~~~r~~~~-~-----------~a~~iAEyfr~~g~~Vll~~D----sltr~A~A~rEisl-----------~~ 271 (438)
T PRK07721 224 QP-----ALMRIKGA-Y-----------TATAIAEYFRDQGLNVMLMMD----SVTRVAMAQREIGL-----------AV 271 (438)
T ss_pred CC-----HHHHHHHH-H-----------HHHHHHHHHHHCCCcEEEEEe----ChHHHHHHHHHHHH-----------hc
Confidence 31 11111100 0 0011122222222110 011 1110 00000 111 12
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHH-hCCc-----EEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 185 DEP--TVNLDPLSTYLIVSMLSSYAK-RKSR-----AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 185 DEP--TsgLD~~~~~~i~~~L~~l~~-~~g~-----tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.|| |+|+|+....++.++++++.+ ..|. ||++.+|+-. + .+||++..+.+|+++.+++..+.
T Consensus 272 ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~-e--~i~d~v~~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 272 GEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN-E--PIADTVRGILDGHFVLDRQLANK 341 (438)
T ss_pred CCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC-c--hhhhhEEEecCEEEEEeccHHHC
Confidence 343 789999999999999999874 3465 8888888654 3 78999999999999999987653
No 430
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.24 E-value=1e-11 Score=144.67 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=63.5
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEecCCcchHHhcCCeEE
Q psy10223 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS-MLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTA 233 (606)
Q Consensus 155 ~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~-~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~ 233 (606)
....+.+|+|++|++.|++++ .+|+++++|||++|+|+.....+.. ++..+.+ .|.++|+++|++ +.....+|+..
T Consensus 385 ~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~-el~~~~~~~~~ 461 (782)
T PRK00409 385 EQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYK-ELKALMYNREG 461 (782)
T ss_pred hhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChH-HHHHHHhcCCC
Confidence 345678999999999999998 8999999999999999999988865 5666654 588999999974 23333344443
Q ss_pred EEcCCeEEE
Q psy10223 234 YLCLGDLIY 242 (606)
Q Consensus 234 vL~~G~~v~ 242 (606)
+. ++.+.+
T Consensus 462 v~-~~~~~~ 469 (782)
T PRK00409 462 VE-NASVEF 469 (782)
T ss_pred eE-EEEEEE
Confidence 33 455544
No 431
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.19 E-value=3.7e-11 Score=136.10 Aligned_cols=77 Identities=19% Similarity=0.210 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEE
Q psy10223 159 SELTPSEHRRVVIGTQLVKD----PVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAY 234 (606)
Q Consensus 159 ~~LSgGerqRvsIa~aL~~~----p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~v 234 (606)
+.+||||+||++||++++.. |+++++||||+|||+.++..+.+.|+++++ +.+||+++|+| .+...+|++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~--~~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLP--QVAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChH--HHHHhcCeEEE
Confidence 36899999999999999985 699999999999999999999999999963 78999999986 35578999999
Q ss_pred EcCCe
Q psy10223 235 LCLGD 239 (606)
Q Consensus 235 L~~G~ 239 (606)
|++|.
T Consensus 515 l~k~~ 519 (563)
T TIGR00634 515 VEKEG 519 (563)
T ss_pred EEEcc
Confidence 98864
No 432
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.18 E-value=3.8e-11 Score=136.10 Aligned_cols=79 Identities=25% Similarity=0.301 Sum_probs=69.2
Q ss_pred cCCCCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchH
Q psy10223 157 NISELTPSEHRRVVIGTQLV----------KDPVLLLLDEPT-VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDV 225 (606)
Q Consensus 157 ~v~~LSgGerqRvsIa~aL~----------~~p~llllDEPT-sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i 225 (606)
.+..||||||||++||++|+ .+|++++||||| ++||+.+...+.+.|+++ .+.++|+++|++ +.
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~---~~~~iiiish~~--~~ 539 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL---KDTNVFVISHKD--HD 539 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC---CCCeEEEEECch--hc
Confidence 45789999999999999987 599999999998 789999999999999987 378899999985 45
Q ss_pred HhcCCeEEEEcC-CeE
Q psy10223 226 LPFLDRTAYLCL-GDL 240 (606)
Q Consensus 226 ~~~~D~v~vL~~-G~~ 240 (606)
...+|++++|.+ |+.
T Consensus 540 ~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 540 PQKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhhcEEEEEEECCe
Confidence 678999999986 553
No 433
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=8.1e-11 Score=142.41 Aligned_cols=86 Identities=16% Similarity=0.033 Sum_probs=76.8
Q ss_pred chhhcccCCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy10223 151 SNVARRNISELTPSEHRRVVIGTQLVK----------DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEK 220 (606)
Q Consensus 151 ~~~~~~~v~~LSgGerqRvsIa~aL~~----------~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~ 220 (606)
....++.++.|||||++||+||++|+. +|+++|+||||+|||+.+...+++.|+.+.+ .|++|++++|.
T Consensus 941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~ 1019 (1042)
T TIGR00618 941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHV 1019 (1042)
T ss_pred CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCc
Confidence 445567889999999999999999986 7999999999999999999999999999976 68999999887
Q ss_pred CcchHHhcCCeEEEEcCC
Q psy10223 221 PRSDVLPFLDRTAYLCLG 238 (606)
Q Consensus 221 ~~~~i~~~~D~v~vL~~G 238 (606)
+ +....++|+|.|++.|
T Consensus 1020 ~-~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1020 P-EFRERIPHRILVKKTN 1036 (1042)
T ss_pred H-HHHHhhCCEEEEEECC
Confidence 5 5688999999999754
No 434
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.17 E-value=3.3e-10 Score=109.47 Aligned_cols=145 Identities=20% Similarity=0.165 Sum_probs=97.7
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q psy10223 56 LAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRY 135 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~ 135 (606)
+.|.||+|+|||||.--++-... .. | ..+.|+.=+ .|..+.+.....+. ..-
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~--~~------g---------~~v~~~s~e------~~~~~~~~~~~~~g----~~~- 53 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL--AR------G---------EPGLYVTLE------ESPEELIENAESLG----WDL- 53 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH--HC------C---------CcEEEEECC------CCHHHHHHHHHHcC----CCh-
Confidence 68999999999998875542210 00 1 123343221 24444444433321 111
Q ss_pred HHHHHHHHHHHHcCCchhhcccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHH
Q psy10223 136 VRNARIRQVLADLALSNVARRNISELTPSEHR------RVVIGTQLVKDPVLLLLDEPTVNLD---PLSTYLIVSMLSSY 206 (606)
Q Consensus 136 ~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerq------RvsIa~aL~~~p~llllDEPTsgLD---~~~~~~i~~~L~~l 206 (606)
+ .+...|+....+..+..+|+|++| +.....+...+|+++++|||++.+| ...+..+.+.++.+
T Consensus 54 ------~-~l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l 126 (187)
T cd01124 54 ------E-RLEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFAL 126 (187)
T ss_pred ------H-HHHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHH
Confidence 1 123345556667888899999998 4555555677999999999999999 88888888888888
Q ss_pred HHhCCcEEEEEecCCcc--------hHHhcCCeEEEEc
Q psy10223 207 AKRKSRAVLLTMEKPRS--------DVLPFLDRTAYLC 236 (606)
Q Consensus 207 ~~~~g~tii~t~h~~~~--------~i~~~~D~v~vL~ 236 (606)
++ .|.|+|+++|.... .+..++|.++.|+
T Consensus 127 ~~-~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 127 KR-FGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HH-CCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 75 48899998886543 2678899999887
No 435
>PRK10869 recombination and repair protein; Provisional
Probab=99.15 E-value=1e-10 Score=131.75 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE
Q psy10223 160 ELTPSEHRRVVIGTQLVK----DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL 235 (606)
Q Consensus 160 ~LSgGerqRvsIa~aL~~----~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL 235 (606)
.+||||+|||+||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||+++|+| .+..++|+.+++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~--~~~~~ad~~~~v 505 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLP--QVAGCGHQHFFV 505 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCH--HHHHhCCEEEEE
Confidence 479999999999999997 5899999999999999999999999999964 58899999987 466899999999
Q ss_pred cCC
Q psy10223 236 CLG 238 (606)
Q Consensus 236 ~~G 238 (606)
.++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 875
No 436
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.15 E-value=3.8e-10 Score=113.61 Aligned_cols=151 Identities=12% Similarity=0.158 Sum_probs=91.8
Q ss_pred EEEeCCeEEEEEcCCCccHHHH-HHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHc
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRAL-LEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHL 126 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTL-Lk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~ 126 (606)
+-+++|++++|.|+|||||||| ++.+++..+ . | ..+.|+..+ .|..+.+.....+
T Consensus 19 ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~--g---------------~~~~yi~~e------~~~~~~~~~~~~~ 74 (230)
T PRK08533 19 GGIPAGSLILIEGDESTGKSILSQRLAYGFLQ-N--G---------------YSVSYVSTQ------LTTTEFIKQMMSL 74 (230)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-C--C---------------CcEEEEeCC------CCHHHHHHHHHHh
Confidence 3589999999999999999999 688887643 1 1 123444322 2455555544332
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CHHHHHH
Q psy10223 127 SIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV----KDPVLLLLDEPTVNL----DPLSTYL 198 (606)
Q Consensus 127 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~----~~p~llllDEPTsgL----D~~~~~~ 198 (606)
.. .. ++.... +.-...+.. ..+|+++.++-.+.+.+- .+|+++++||||+++ |+....+
T Consensus 75 g~--~~---------~~~~~~-~~l~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~ 141 (230)
T PRK08533 75 GY--DI---------NKKLIS-GKLLYIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVND 141 (230)
T ss_pred CC--ch---------HHHhhc-CcEEEEEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHH
Confidence 11 10 111110 100011111 235666655544444332 369999999999999 8888889
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcc------hHHhcCCeEEEEc
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRS------DVLPFLDRTAYLC 236 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~------~i~~~~D~v~vL~ 236 (606)
+.+.++.+++. |.|+++++++... .+..++|-|+.|+
T Consensus 142 l~~~l~~l~~~-g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 142 LMAFFKRISSL-NKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHhC-CCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 99999998764 7788887664321 1244567777776
No 437
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.13 E-value=5.2e-11 Score=118.08 Aligned_cols=63 Identities=29% Similarity=0.479 Sum_probs=53.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 158 ISELTPSEHRRVVIGTQLVKDP---VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 158 v~~LSgGerqRvsIa~aL~~~p---~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
...+|.|+||.+.|+..+...+ .++++|||-++|+|..+..+++.|++.++ .+.-+|+|||.|
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp 299 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSP 299 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-G
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccc
Confidence 3567999999999998888777 89999999999999999999999988876 578899999976
No 438
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.11 E-value=4.3e-10 Score=114.23 Aligned_cols=180 Identities=15% Similarity=0.111 Sum_probs=100.1
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCC-eeEEEE--CCE-eCCcccccC---eEEEEcCCCCCCCCCCH---H
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT-RGEIIL--DGT-PMSPQLFQT---TCGYVNHRTDLIPSLTV---E 117 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~-~G~I~~--~G~-~~~~~~~~~---~i~yv~q~~~~~~~lTV---~ 117 (606)
..+.+||.++|+||+|+|||||++.|++...... ...+.+ -+. ..+...+.+ .+..+.+-+. .+...+ +
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~ 89 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAE 89 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHH
Confidence 4688999999999999999999999998765210 122221 121 122111211 1222333222 111100 0
Q ss_pred HHHHHHHHccC-CCCCC-HHHHHHHHHHHHHHcCCchhhcccCCCCCHHH--------HHHHHHHHHHhhCCCEEEEeCC
Q psy10223 118 QTLYYAAHLSI-GPQVS-RYVRNARIRQVLADLALSNVARRNISELTPSE--------HRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 118 e~l~f~~~~~~-~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGe--------rqRvsIa~aL~~~p~llllDEP 187 (606)
.-+..+...+. +...- --+...+..+..+... ...-+.+|||+ +||+++|+++..+++|.++ |
T Consensus 90 ~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~-----~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~ 162 (249)
T cd01128 90 MVLEKAKRLVEHGKDVVILLDSITRLARAYNTVV-----PPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--A 162 (249)
T ss_pred HHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhcc-----ccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--e
Confidence 11111111000 00000 0000011111222211 12234579999 9999999999999999999 9
Q ss_pred CCCCCHHHHHH-HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 188 TVNLDPLSTYL-IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 188 TsgLD~~~~~~-i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
|+.+|+.+... ++ +.++.. .+.|.|+.+|.. .....+|.|.+|+.|+.
T Consensus 163 T~~~d~~~~~~~~i--~~~~~~-~~~~~ivls~~l--a~~~~~paI~vl~s~sr 211 (249)
T cd01128 163 TALVDTGSRMDDVI--FEEFKG-TGNMELVLDRRL--AERRIFPAIDILKSGTR 211 (249)
T ss_pred eheecCCCcccchH--HHHHhc-CCCcEEEEchHH--hhCCCCCeEEEcCCCCc
Confidence 99999644433 44 444432 467788878864 45778999999999986
No 439
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.10 E-value=1.6e-09 Score=108.05 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=85.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+-+|+++..++|++++|.||||+||||+++++++..--...| ..+..+ +..+++ -+.++..+...|+
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G------~~vpa~--~~~i~~---~~~i~~~~~~~d~ 85 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMG------MDVPAK--SMRLSL---VDRIFTRIGARDD 85 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcC------CccCcc--ccEecc---ccEEEEecCcccc
Confidence 57899999999999999999999999999999998652100001 111111 011111 1122222222222
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+... .+. .. .|-+|++-....+.+|+++++|||.+|+|+.....+
T Consensus 86 ~~~~--------~St--F~-------------------------~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~l 130 (218)
T cd03286 86 IMKG--------EST--FM-------------------------VELSETANILRHATPDSLVILDELGRGTSTHDGYAI 130 (218)
T ss_pred cccC--------cch--HH-------------------------HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHH
Confidence 2110 010 00 133333333334578999999999999999999998
Q ss_pred HHH-HHHHHHhCCcEEEEEecCC
Q psy10223 200 VSM-LSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 200 ~~~-L~~l~~~~g~tii~t~h~~ 221 (606)
... ++.+.+..+.++|+++|..
T Consensus 131 a~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 131 AHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred HHHHHHHHHHhcCCcEEEEeccH
Confidence 888 7777654478888888874
No 440
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.05 E-value=6e-10 Score=117.02 Aligned_cols=142 Identities=12% Similarity=0.129 Sum_probs=94.4
Q ss_pred eEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe-CCcccccCeEEEEcCCCC-CCCCCCHHHHHHHH
Q psy10223 46 ISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP-MSPQLFQTTCGYVNHRTD-LIPSLTVEQTLYYA 123 (606)
Q Consensus 46 vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~-~~~~~~~~~i~yv~q~~~-~~~~lTV~e~l~f~ 123 (606)
+++.+++|+.++|.||+|||||||+++|++..+ +..|.+.++... +... .+..+....+... -....|..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~-~~~~iv~ied~~El~~~-~~~~~~l~~~~~~~~~~~~~~~------ 208 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP-KDERIITIEDTREIFLP-HPNYVHLFYSKGGQGLAKVTPK------ 208 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC-ccccEEEEcCccccCCC-CCCEEEEEecCCCCCcCccCHH------
Confidence 456788999999999999999999999999986 566777765311 1100 1122222221100 00011111
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy10223 124 AHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203 (606)
Q Consensus 124 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L 203 (606)
-.+..+|-.+|+++++|||.+ .+..+.+
T Consensus 209 ---------------------------------------------~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l 236 (308)
T TIGR02788 209 ---------------------------------------------DLLQSCLRMRPDRIILGELRG-------DEAFDFI 236 (308)
T ss_pred ---------------------------------------------HHHHHHhcCCCCeEEEeccCC-------HHHHHHH
Confidence 124445677999999999996 3455667
Q ss_pred HHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 204 ~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+.+. .++.+++.|+|..+ +.+..||+..|..|++...|.+.+..
T Consensus 237 ~a~~-~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 237 RAVN-TGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHh-cCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 6664 34456788888653 67779999999999998888887765
No 441
>PRK13695 putative NTPase; Provisional
Probab=99.05 E-value=7.5e-11 Score=113.39 Aligned_cols=81 Identities=14% Similarity=0.166 Sum_probs=64.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEE
Q psy10223 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEP--TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTA 233 (606)
Q Consensus 156 ~~v~~LSgGerqRvsIa~aL~~~p~llllDEP--TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~ 233 (606)
+.+..+||+|+.+..+++..+.+|+++++||| +.++| ..+.+.+.++.+ .+.++|+++|.. .+...+|++.
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~-~~~~~i~v~h~~--~~~~~~~~i~ 146 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLD-SEKPVIATLHRR--SVHPFVQEIK 146 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHh-CCCeEEEEECch--hhHHHHHHHh
Confidence 44557999999999999999999999999995 44444 335666666653 578999999963 5678899999
Q ss_pred EEcCCeEEEe
Q psy10223 234 YLCLGDLIYA 243 (606)
Q Consensus 234 vL~~G~~v~~ 243 (606)
.+.+|++++.
T Consensus 147 ~~~~~~i~~~ 156 (174)
T PRK13695 147 SRPGGRVYEL 156 (174)
T ss_pred ccCCcEEEEE
Confidence 9999998765
No 442
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.05 E-value=2.6e-09 Score=120.26 Aligned_cols=137 Identities=19% Similarity=0.355 Sum_probs=105.2
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHH------HHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhC--CCE
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ------VLADLALSN-VARRNISELTPSEHRRVVIGTQLVKD--PVL 181 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~------~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~--p~l 181 (606)
+..+++.|.+.|...+.+.. ..+...+..+++ .|..+||.- .+++....|||||.||+-+|..+=++ --+
T Consensus 426 ~~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVl 504 (935)
T COG0178 426 ISEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 504 (935)
T ss_pred HhhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeE
Confidence 44577888888877654211 111111222222 233457765 36788899999999999999999776 347
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHHH
Q psy10223 182 LLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLMLE 251 (606)
Q Consensus 182 lllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~~ 251 (606)
++||||+-||-+..-..+++.|+++.+ .|-|+|++-|+ ++....+|+|+=| +.|++++.|+++++++
T Consensus 505 YVLDEPSIGLHqrDn~rLi~tL~~LRD-lGNTviVVEHD--edti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 505 YVLDEPSIGLHQRDNERLIETLKRLRD-LGNTVIVVEHD--EDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHh-cCCeEEEEecC--HHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 899999999999999999999999976 68899999887 4789999999987 4589999999999985
No 443
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.03 E-value=4.3e-10 Score=105.01 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcch
Q psy10223 160 ELTPSEHRRVVIGTQLVKDPVLLLLDEPTV----------NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSD 224 (606)
Q Consensus 160 ~LSgGerqRvsIa~aL~~~p~llllDEPTs----------gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~ 224 (606)
..+.++.++...+.+...+|+++++||+++ ++|...+..+.+++.. +++.+.++++++|.+..+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLER-ARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HhcCCceEEEEEecCCcc
Confidence 445566667888889999999999999995 4455555555555544 455689999999977544
No 444
>PRK01156 chromosome segregation protein; Provisional
Probab=98.99 E-value=2.7e-09 Score=127.52 Aligned_cols=79 Identities=23% Similarity=0.280 Sum_probs=67.4
Q ss_pred ccCCCCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC-C-cEEEEEecCCcchHHh
Q psy10223 156 RNISELTPSEHRRVVI------GTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK-S-RAVLLTMEKPRSDVLP 227 (606)
Q Consensus 156 ~~v~~LSgGerqRvsI------a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~-g-~tii~t~h~~~~~i~~ 227 (606)
..+..||||||+|++| |++++.+|++++|||||+|||+..+..+.+.|+...+.. + .++|+++|++ +..+
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~--~~~~ 874 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR--ELLS 874 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch--HHHH
Confidence 3578999999999975 589999999999999999999999999999998654433 3 4788888986 4568
Q ss_pred cCCeEEEEc
Q psy10223 228 FLDRTAYLC 236 (606)
Q Consensus 228 ~~D~v~vL~ 236 (606)
.||+++.+.
T Consensus 875 ~~d~ii~~~ 883 (895)
T PRK01156 875 VADVAYEVK 883 (895)
T ss_pred hcCeEEEEE
Confidence 999999998
No 445
>PRK03918 chromosome segregation protein; Provisional
Probab=98.98 E-value=1e-09 Score=130.85 Aligned_cols=79 Identities=25% Similarity=0.344 Sum_probs=68.4
Q ss_pred ccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcC
Q psy10223 156 RNISELTPSEHR------RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFL 229 (606)
Q Consensus 156 ~~v~~LSgGerq------RvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~ 229 (606)
.++..|||||++ |++||++++.+|+++++||||+|||+..+..+.+.|+.+++ .+.++|+++|++ ++...|
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~--~~~~~~ 860 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDE--ELKDAA 860 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCH--HHHHhC
Confidence 456789999999 55556678899999999999999999999999999999865 367899999985 477899
Q ss_pred CeEEEEcC
Q psy10223 230 DRTAYLCL 237 (606)
Q Consensus 230 D~v~vL~~ 237 (606)
|++++|..
T Consensus 861 d~~~~l~~ 868 (880)
T PRK03918 861 DYVIRVSL 868 (880)
T ss_pred CeEEEEEe
Confidence 99999984
No 446
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.97 E-value=7.4e-09 Score=122.01 Aligned_cols=69 Identities=25% Similarity=0.223 Sum_probs=58.6
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchH---------HhcCCeEEEEcCCeEEEecC
Q psy10223 176 VKDPVLLLLDEPTVNL-DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDV---------LPFLDRTAYLCLGDLIYAGP 245 (606)
Q Consensus 176 ~~~p~llllDEPTsgL-D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i---------~~~~D~v~vL~~G~~v~~G~ 245 (606)
..+|+++++|||+.+| |+..+..+.+.+++..+ .|.++++++|++. ++ .+.||++++|.+|++...|+
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 79999999999999875 5788999999875 44 36899999999999876664
Q ss_pred h
Q psy10223 246 T 246 (606)
Q Consensus 246 ~ 246 (606)
.
T Consensus 728 ~ 728 (818)
T PRK13830 728 R 728 (818)
T ss_pred H
Confidence 3
No 447
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.92 E-value=5.4e-09 Score=113.41 Aligned_cols=154 Identities=16% Similarity=0.177 Sum_probs=107.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
..+++++ +.+.+||.++|+|+||+|||||+++|++..+ +..|.|.+.|+.. .+|.|.
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-~~~gvI~~iGerg---------------------~ev~e~ 200 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK-ADINVISLVGERG---------------------REVKDF 200 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC-CCeEEEEeCCCCc---------------------ccHHHH
Confidence 4578775 9999999999999999999999999999876 5667666555321 355555
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCCCCCC
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLV-------KDPVLLLLDEPTVNL 191 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~-------~~p~llllDEPTsgL 191 (606)
+...+. .-++.+ +.=....+-|.|+|+|+..+.+.+ .++-++++|+||+..
T Consensus 201 ~~~~l~---------------------~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a 259 (432)
T PRK06793 201 IRKELG---------------------EEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFA 259 (432)
T ss_pred HHHHhh---------------------hcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHH
Confidence 432221 001110 001234678999999999998887 789999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecC
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGP 245 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~ 245 (606)
|+. .++-..+.+... .|.+..+.+|++ .+ ++|.-...+|.+...+.
T Consensus 260 ~A~--reisl~~~e~p~-~G~~~~~~s~l~--~L---~ERag~~~~GSiT~~~t 305 (432)
T PRK06793 260 DAR--RSVDIAVKELPI-GGKTLLMESYMK--KL---LERSGKTQKGSITGIYT 305 (432)
T ss_pred HHH--HHHHHHhcCCCC-CCeeeeeeccch--hH---HHHhccCCCcceEEEEE
Confidence 996 566666666553 377777766642 34 44444457887765543
No 448
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=98.89 E-value=3e-08 Score=97.85 Aligned_cols=115 Identities=9% Similarity=-0.083 Sum_probs=87.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Q psy10223 389 YSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYIN 468 (606)
Q Consensus 389 Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~~ 468 (606)
-++..+++++++..++..+++++++..+.|++.|++.. +++.+++.+++......+++..+++..++...+ .+.+.
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~-~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~---~~~~~ 132 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA-HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF---LALVL 132 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC-CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH---HHHHH
Confidence 44567799999999999999999999999999998753 455555555666666667777777776643221 22222
Q ss_pred HHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHHH
Q psy10223 469 IIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSR 507 (606)
Q Consensus 469 ~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~ 507 (606)
+.+.+.++|.+.|.+.||.|++|+.|++|++|+.+++..
T Consensus 133 ~~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~ 171 (208)
T TIGR03062 133 LVLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQ 171 (208)
T ss_pred HHHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHH
Confidence 334556788889999999999999999999999999943
No 449
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.88 E-value=5e-09 Score=126.60 Aligned_cols=82 Identities=16% Similarity=0.056 Sum_probs=68.8
Q ss_pred hcccCCCCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchH
Q psy10223 154 ARRNISELTPSEHRRVVIGTQLVK--------DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDV 225 (606)
Q Consensus 154 ~~~~v~~LSgGerqRvsIa~aL~~--------~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i 225 (606)
.++.+++|||||++|++||++|+. +|+++|+||||++||+.+...+++.|+.+.+ .|++|++++|.+ ...
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~-~l~ 1020 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVE-AMK 1020 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHH-HHH
Confidence 347789999999999999999996 8999999999999999999999999999975 599999999943 233
Q ss_pred HhcCCeEEEEcC
Q psy10223 226 LPFLDRTAYLCL 237 (606)
Q Consensus 226 ~~~~D~v~vL~~ 237 (606)
-++-.+|.|-..
T Consensus 1021 ~~i~~qi~V~k~ 1032 (1047)
T PRK10246 1021 ERIPVQIKVKKI 1032 (1047)
T ss_pred HhccceEEEEEC
Confidence 444555555544
No 450
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.85 E-value=1.5e-08 Score=102.62 Aligned_cols=136 Identities=21% Similarity=0.306 Sum_probs=86.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECC-EeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG-TPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ 131 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G-~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~ 131 (606)
|++.+|.||+|+|||||+-.++-... .|.=.+++ .... -...+.|+.-++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va---~G~~~~g~~~~~~---~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA---LGKNLFGGGLKVT---EPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh---cCccccCCccccC---CCceEEEEECCC-----------------------
Confidence 67889999999999999887763211 12111111 1111 134566665332
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC------
Q psy10223 132 VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGT----------------QLVKDPVLLLLDEPTV------ 189 (606)
Q Consensus 132 ~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~----------------aL~~~p~llllDEPTs------ 189 (606)
+..+..+|+..+...+++.+..++... .+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~ 127 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVS 127 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceEE--eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCC
Confidence 122334556666666655444333321 145555554443 335799999999 765
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
.+|+.....+++.|++++++.|.++++++|..
T Consensus 128 ~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 128 ENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 47999999999999999988899999998865
No 451
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.85 E-value=4.1e-08 Score=93.61 Aligned_cols=67 Identities=16% Similarity=0.366 Sum_probs=53.2
Q ss_pred hcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q psy10223 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPR 222 (606)
Q Consensus 154 ~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~ 222 (606)
........|.||-=---+.+. ..+.-+++||||-++|.+.-+.+++..|+++++. |.-+|+.+|.|.
T Consensus 123 ~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPi 189 (233)
T COG3910 123 GGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPI 189 (233)
T ss_pred CCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChh
Confidence 344456778888654444443 4567899999999999999999999999999975 678888889875
No 452
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.83 E-value=6.6e-09 Score=128.44 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=62.2
Q ss_pred ccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hCCcEEEEEecCCcchH
Q psy10223 156 RNISELTPSEHR------RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK----RKSRAVLLTMEKPRSDV 225 (606)
Q Consensus 156 ~~v~~LSgGerq------RvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~----~~g~tii~t~h~~~~~i 225 (606)
...+.||||||| |++||++++.+|++++|||||+|||+.+...+.+.|..+.. ..|.++|+++|++ ..+
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~ 1273 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFV 1273 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHH
Confidence 345789999999 99999999999999999999999999999999999988742 2478999999875 456
Q ss_pred HhcC
Q psy10223 226 LPFL 229 (606)
Q Consensus 226 ~~~~ 229 (606)
..+|
T Consensus 1274 ~~~~ 1277 (1311)
T TIGR00606 1274 ELLG 1277 (1311)
T ss_pred HHHh
Confidence 5554
No 453
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.79 E-value=2.1e-07 Score=83.45 Aligned_cols=119 Identities=25% Similarity=0.347 Sum_probs=76.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ 131 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~ 131 (606)
++..+.|.||+|+||||+++.|+........+-+.++......... ....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVL------------------DQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCH------------------HHHH------------
Confidence 4678999999999999999999988752211334443332211000 0000
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-----HHHHH
Q psy10223 132 VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS-----MLSSY 206 (606)
Q Consensus 132 ~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~-----~L~~l 206 (606)
............+++..+..+.++--.+|+++++||+..-.+......... .....
T Consensus 51 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~ 111 (148)
T smart00382 51 -------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLL 111 (148)
T ss_pred -------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHH
Confidence 111122334566777777777777777799999999999999998887664 22333
Q ss_pred HHhCCcEEEEEec
Q psy10223 207 AKRKSRAVLLTME 219 (606)
Q Consensus 207 ~~~~g~tii~t~h 219 (606)
....+..+|++++
T Consensus 112 ~~~~~~~~i~~~~ 124 (148)
T smart00382 112 KSEKNLTVILTTN 124 (148)
T ss_pred HhcCCCEEEEEeC
Confidence 3345677888777
No 454
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.79 E-value=2.7e-08 Score=97.90 Aligned_cols=58 Identities=21% Similarity=0.258 Sum_probs=42.3
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 170 VIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 170 sIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
+|+++|..+|+++++|||. |..+...++ +.+. .|..++.|+|.++ +.+..||++.+..
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~-~G~~v~~t~Ha~~--~~~~~~Rl~~l~~ 123 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAE-TGHLVMSTLHTNS--AAKTIDRIIDVFP 123 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHH-cCCEEEEEecCCc--HHHHHhHHHhhcC
Confidence 4778889999999999996 666544333 3343 5788999999763 5577899877743
No 455
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.79 E-value=7.8e-08 Score=96.92 Aligned_cols=159 Identities=10% Similarity=0.100 Sum_probs=94.5
Q ss_pred EEee-EEEEeCCeEEEEEcCCCccHHHHHHHHHc-CCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 43 LKDI-SLEVRPGEVLAVLGSKGSGKRALLEVISR-RSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 43 L~~v-s~~v~~Ge~~~IlG~nGsGKSTLLk~L~g-~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
|+.+ .+=+++|.++.|.|+||||||||...++- ... .. ..+.|+..+. +..+.+
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g----------------~~~~y~~~e~------~~~~~~ 69 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK--QG----------------KKVYVITTEN------TSKSYL 69 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh--CC----------------CEEEEEEcCC------CHHHHH
Confidence 4443 45699999999999999999999988752 111 11 1234443321 233322
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHH--HcCCchhhcccCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC---CCH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLA--DLALSNVARRNISELTPSEHRRVVIGTQLVK--DPVLLLLDEPTVN---LDP 193 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~--~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~--~p~llllDEPTsg---LD~ 193 (606)
.-..... ..- ++.+. .+.+-+..-..+...|.++++.+..+..++. +|+++++||||+. +|.
T Consensus 70 ~~~~~~g----~~~-------~~~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~ 138 (234)
T PRK06067 70 KQMESVK----IDI-------SDFFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEE 138 (234)
T ss_pred HHHHHCC----CCh-------hHHHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCH
Confidence 2222211 110 01100 0111010011223456788999999999987 9999999999964 555
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcch------HHhcCCeEEEEcC
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSD------VLPFLDRTAYLCL 237 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~------i~~~~D~v~vL~~ 237 (606)
....++++.++.+++ .+.|+++++|+.... +..++|-++.|+.
T Consensus 139 ~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 139 DDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 555666666776665 578999998875421 4566677777763
No 456
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.78 E-value=7.6e-09 Score=126.64 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=67.9
Q ss_pred hcccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcC
Q psy10223 154 ARRNISELTPSEHRRVVIGTQLV----KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFL 229 (606)
Q Consensus 154 ~~~~v~~LSgGerqRvsIa~aL~----~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~ 229 (606)
.+..+..||||||+|++||++++ .+|+++||||||+|||+.++..+.+.|+.+++ +.++|+++|++. ....|
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~--~~~~~ 1158 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKG--TMEVA 1158 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChh--HHHHh
Confidence 34567899999999999999984 67799999999999999999999999999864 467888899864 46789
Q ss_pred CeEEEEc
Q psy10223 230 DRTAYLC 236 (606)
Q Consensus 230 D~v~vL~ 236 (606)
|+++.+.
T Consensus 1159 d~~~~~~ 1165 (1179)
T TIGR02168 1159 DQLYGVT 1165 (1179)
T ss_pred hhHeeee
Confidence 9997664
No 457
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.78 E-value=1.6e-07 Score=94.59 Aligned_cols=117 Identities=14% Similarity=0.087 Sum_probs=87.6
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Q psy10223 387 GLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSY 466 (606)
Q Consensus 387 ~~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~ 466 (606)
.=.++..+.+++.+..++..+++.+++.++.|++.+++.. .++..++..++......+++..++...++...+......
T Consensus 85 ~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~-~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~ 163 (236)
T TIGR01247 85 APASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPS-GVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSM 163 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3446889999999999999999999999999988775432 333333334444455566777777766665444343333
Q ss_pred HHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHH
Q psy10223 467 INIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFL 505 (606)
Q Consensus 467 ~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal 505 (606)
+ ..+++..||.+.|.+.||.|++|+.++||++|+.|++
T Consensus 164 ~-~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~ 201 (236)
T TIGR01247 164 L-MLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGA 201 (236)
T ss_pred H-HHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHH
Confidence 3 4556788999999999999999999999999999987
No 458
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.76 E-value=5.7e-09 Score=113.23 Aligned_cols=51 Identities=29% Similarity=0.442 Sum_probs=45.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCee-EEEECCEeCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG-EIILDGTPMS 93 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G-~I~~~G~~~~ 93 (606)
+.+|++||+++++||+++|+|||||||||||+ +|+.. +.+| +|.++|.++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~-~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK-FSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC-CCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 67766 4555 8999999875
No 459
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=98.72 E-value=3.6e-07 Score=91.87 Aligned_cols=116 Identities=12% Similarity=0.041 Sum_probs=77.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchh--HHHHHHHHH
Q psy10223 389 YSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAEYLSVALLLVVESG--FTAAVVSSY 466 (606)
Q Consensus 389 Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~--~~aa~~~~~ 466 (606)
.++.++.+++++..++..+++.+++. +++++.|++.....+..++.+.+....+..++..++.+.++. ..++.....
T Consensus 76 ~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~ 154 (232)
T TIGR00025 76 LPRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVAN 154 (232)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 47899999999999998877765554 556677876443333333322233333444444444444321 122222333
Q ss_pred HHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHH
Q psy10223 467 INIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFL 505 (606)
Q Consensus 467 ~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal 505 (606)
+..++++++||.+.|.+.||.|++|+.+++|++|+.+++
T Consensus 155 ~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~ 193 (232)
T TIGR00025 155 LVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEAL 193 (232)
T ss_pred HHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHH
Confidence 345667788999999999999999999999999999988
No 460
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.71 E-value=3.6e-08 Score=108.47 Aligned_cols=129 Identities=18% Similarity=0.174 Sum_probs=84.4
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
.++++.+..+++|++++++||||+||||++..|++... ...|. ++++++.+|. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~-~~~G~--------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV-MRHGA--------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH-HhcCC--------------CeEEEEeCCc---cchhHHHHH
Confidence 35677777788999999999999999999999998753 22221 2567777765 447899999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCCC
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHR-RVVIGTQLVKDP-----VLLLLDEPTVN 190 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerq-RvsIa~aL~~~p-----~llllDEPTsg 190 (606)
.+.+.... ++........+......++.+.....+.+...+++. .+.-..+++.++ .+|+||.++.+
T Consensus 306 r~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~ 378 (484)
T PRK06995 306 RIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG 378 (484)
T ss_pred HHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH
Confidence 98776532 111111122333445556666555666665444443 233444455554 68999999887
No 461
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.70 E-value=2.2e-08 Score=122.73 Aligned_cols=78 Identities=10% Similarity=0.203 Sum_probs=67.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCe
Q psy10223 156 RNISELTPSEHRRVVIGTQLVK----DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDR 231 (606)
Q Consensus 156 ~~v~~LSgGerqRvsIa~aL~~----~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~ 231 (606)
+.+..||||||++++||.+++. +|++++||||++|||+..+..+.++|+++++ +..+|+++|++ .+...||+
T Consensus 1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~--~~~~~~d~ 1145 (1164)
T TIGR02169 1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRS--PMIEYADR 1145 (1164)
T ss_pred CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcH--HHHHhcce
Confidence 3467899999999999999985 7899999999999999999999999999864 46678888886 46799999
Q ss_pred EEEEcC
Q psy10223 232 TAYLCL 237 (606)
Q Consensus 232 v~vL~~ 237 (606)
++.+..
T Consensus 1146 ~~~~~~ 1151 (1164)
T TIGR02169 1146 AIGVTM 1151 (1164)
T ss_pred eEeEEE
Confidence 998864
No 462
>PRK02224 chromosome segregation protein; Provisional
Probab=98.64 E-value=6e-08 Score=115.90 Aligned_cols=78 Identities=23% Similarity=0.283 Sum_probs=65.9
Q ss_pred CCCCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchH
Q psy10223 158 ISELTPSEHR------RVVIGTQLVKD-----P-VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDV 225 (606)
Q Consensus 158 v~~LSgGerq------RvsIa~aL~~~-----p-~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i 225 (606)
+..||||||+ |++++++++.+ | +++++||||++||+..+..+.+.|+.+++.+..+||+++|++ ..
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~--~~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDD--EL 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECCh--HH
Confidence 5689999999 89999998863 3 679999999999999999999999998753234789989986 44
Q ss_pred HhcCCeEEEEcC
Q psy10223 226 LPFLDRTAYLCL 237 (606)
Q Consensus 226 ~~~~D~v~vL~~ 237 (606)
...+|+++.+.+
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 578999999964
No 463
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.55 E-value=1.9e-07 Score=90.92 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=60.7
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCC--CCCCCCCCHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHR--TDLIPSLTVEQT 119 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~--~~~~~~lTV~e~ 119 (606)
..+=+.+.+++|+.++|+||||||||||+++|+|..+ +..|.|.+++..-.....+..++++.|. +...+..|+.+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP-PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADL 92 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHH
Confidence 3444556789999999999999999999999999987 6789999977432111123445555444 345677888888
Q ss_pred HHHHHHc
Q psy10223 120 LYYAAHL 126 (606)
Q Consensus 120 l~f~~~~ 126 (606)
+..+.+.
T Consensus 93 l~~~lR~ 99 (186)
T cd01130 93 LRSALRM 99 (186)
T ss_pred HHHHhcc
Confidence 8776653
No 464
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.52 E-value=2.5e-08 Score=100.01 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=26.8
Q ss_pred EEee-EEEEeCCeEEEEEcCCCccHHHHHHHHH
Q psy10223 43 LKDI-SLEVRPGEVLAVLGSKGSGKRALLEVIS 74 (606)
Q Consensus 43 L~~v-s~~v~~Ge~~~IlG~nGsGKSTLLk~L~ 74 (606)
|+.+ .+=+++|++++|.||||+|||||...++
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 5553 4569999999999999999999988655
No 465
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.49 E-value=2.5e-06 Score=80.46 Aligned_cols=127 Identities=9% Similarity=-0.090 Sum_probs=80.3
Q ss_pred HhhHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchhHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy10223 375 VHRTRYYQEAQEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSC---FLFAEYLSVALL 451 (606)
Q Consensus 375 ~~R~i~~re~~~~~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~~~f~~~l~~~~~---~~~~~s~~~~~~ 451 (606)
.++-.++|-+..-. +++.+++++++...-..+++.++..++.++ .|.+-...+...++++.+. ......++..++
T Consensus 16 r~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a 93 (152)
T TIGR01248 16 REIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMA 93 (152)
T ss_pred HHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666655554 789999999999999999988877777754 3865433322222222111 222222333332
Q ss_pred HHhchhHHHHHHHHHHHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHH
Q psy10223 452 LVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFL 505 (606)
Q Consensus 452 ~~~~~~~~aa~~~~~~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal 505 (606)
...++. .+...... +.+++...+|.+.|.++||.|++|+.++||++|+.+++
T Consensus 94 ~~~~~~-~~~~~~~~-v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~ 145 (152)
T TIGR01248 94 LRKEGR-FAMEALEL-AQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEAC 145 (152)
T ss_pred HHcCCH-HHHHHHHH-HHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHH
Confidence 223332 22222232 34555666788899999999999999999999999998
No 466
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.48 E-value=3.1e-06 Score=87.05 Aligned_cols=157 Identities=10% Similarity=0.065 Sum_probs=83.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
.+.|+++.+-+++|+++.|.|++|+|||||+..++..........+.|-..+.. ..+.
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~----------------------~~~~ 74 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP----------------------VVRT 74 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC----------------------HHHH
Confidence 457899888999999999999999999999988765431011122322221111 1111
Q ss_pred HHHHHHc--cCCCCC---CHHHHHHHHHHHHHHcCCc---hhhcccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCC
Q psy10223 120 LYYAAHL--SIGPQV---SRYVRNARIRQVLADLALS---NVARRNISELTPSEHRRVVIGTQLV--KDPVLLLLDEPTV 189 (606)
Q Consensus 120 l~f~~~~--~~~~~~---~~~~~~~~v~~~l~~lgL~---~~~~~~v~~LSgGerqRvsIa~aL~--~~p~llllDEPTs 189 (606)
+...... ..+... ......++++++++.+.-. ...+ .....+ ..+-+..++.++ .+|+++++|..+.
T Consensus 75 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d-~~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~~ 151 (271)
T cd01122 75 ARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYD-SFGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLSI 151 (271)
T ss_pred HHHHHHHHhCCCcccCCccccccHHHHHHHHHHhcCCCcEEEEc-CCCccC--HHHHHHHHHHHHhcCCceEEEECCHHH
Confidence 1111000 000000 0001112333444333211 1111 111112 234445555554 3799999999876
Q ss_pred CCCH-------H-HHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 190 NLDP-------L-STYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 190 gLD~-------~-~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
-.+. . ...++++.|++++++.+.|+++++|-.
T Consensus 152 l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~ 191 (271)
T cd01122 152 MVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHLR 191 (271)
T ss_pred HhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 4332 1 245677889999988999999987643
No 467
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=98.48 E-value=4.6e-06 Score=85.22 Aligned_cols=115 Identities=12% Similarity=-0.076 Sum_probs=81.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Q psy10223 389 YSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYIN 468 (606)
Q Consensus 389 Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~~ 468 (606)
-++..+.+|+++.+.-..+++.++...+.+++ |.........++.++++..+...+++..++...++...+...... .
T Consensus 99 v~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~~~~l~~~~~~ll~~l~~~~lg~~~a~~~~~~~~~~~i~~~-i 176 (253)
T TIGR01291 99 ITVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEWWSLIYILPVIALTGLAFASLSMLVAALAPSYAYFAFYQSL-V 176 (253)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH-H
Confidence 37889999999998777777666655554433 433333344444444445555567777777777766544444343 3
Q ss_pred HHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHH
Q psy10223 469 IIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFL 505 (606)
Q Consensus 469 ~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal 505 (606)
+.+++..||.+.|.+.||.|++|+.++||+.|+.|++
T Consensus 177 ~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~ 213 (253)
T TIGR01291 177 ITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDI 213 (253)
T ss_pred HHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHH
Confidence 5667778999999999999999999999999999998
No 468
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.46 E-value=8.4e-07 Score=94.71 Aligned_cols=124 Identities=23% Similarity=0.327 Sum_probs=74.7
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIG 129 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~ 129 (606)
.+++.+++|.||+||||||+|+.|.+....+..+.|..-..++.. ........+.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~-~~~~~~~~i~q~e--------------------- 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY-VHRNKRSLINQRE--------------------- 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh-hccCccceEEccc---------------------
Confidence 457889999999999999999999886542334555543332210 0000001111100
Q ss_pred CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q psy10223 130 PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209 (606)
Q Consensus 130 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~ 209 (606)
.|.. ..+ -.-+++.+|-.+|+++++||+. |+.++...++. + .
T Consensus 177 ------------------vg~~--------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a----a-~ 218 (343)
T TIGR01420 177 ------------------VGLD--------TLS----FANALRAALREDPDVILIGEMR---DLETVELALTA----A-E 218 (343)
T ss_pred ------------------cCCC--------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH----H-H
Confidence 0000 000 1123566788899999999997 88887654442 3 3
Q ss_pred CCcEEEEEecCCcchHHhcCCeEEEE
Q psy10223 210 KSRAVLLTMEKPRSDVLPFLDRTAYL 235 (606)
Q Consensus 210 ~g~tii~t~h~~~~~i~~~~D~v~vL 235 (606)
.|..++.|+|.. +.....+|++-|
T Consensus 219 tGh~v~~T~Ha~--~~~~~~~Rl~~~ 242 (343)
T TIGR01420 219 TGHLVFGTLHTN--SAAQTIERIIDV 242 (343)
T ss_pred cCCcEEEEEcCC--CHHHHHHHHHHh
Confidence 588888888864 455667777655
No 469
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.44 E-value=2e-07 Score=91.35 Aligned_cols=113 Identities=13% Similarity=0.161 Sum_probs=68.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSR 134 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~ 134 (606)
+++|.||||||||||.+.|++...+ |.+. ++++|+. +..++..+........ .....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~---~~~~----------------v~~~D~~-~~~~~~~~~~~~~~~~---~~~~~ 57 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGN---PKVV----------------IISQDSY-YKDLSHEELEERKNNN---YDHPD 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC---CCeE----------------EEEeccc-ccccccccHHHhccCC---CCCCC
Confidence 5799999999999999999987631 2222 2222221 1112222221111100 00111
Q ss_pred HHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 135 YVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 135 ~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
....+...+.++.+...+..+.+....|.|++++..+ .+.+++++++|.|..+.++
T Consensus 58 ~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 58 AFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1112344566766766666677778889998876655 5788999999999999886
No 470
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.44 E-value=5e-06 Score=98.71 Aligned_cols=55 Identities=25% Similarity=0.295 Sum_probs=46.4
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHh
Q psy10223 171 IGTQLVKDPVLLLLDEPTVNL-DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLP 227 (606)
Q Consensus 171 Ia~aL~~~p~llllDEPTsgL-D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~ 227 (606)
|++++..+|+++++|||+.+| |+..+..+.+.++.+.+ .|.++++++|++. ++.+
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~-d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLS-DAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHhh
Confidence 677888999999999999999 79999999999999876 4778888888764 4443
No 471
>PRK14079 recF recombination protein F; Provisional
Probab=98.44 E-value=4e-07 Score=97.36 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCC
Q psy10223 160 ELTPSEHRRVVIGTQLV---------KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLD 230 (606)
Q Consensus 160 ~LSgGerqRvsIa~aL~---------~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D 230 (606)
-+|+||+|++.+|..|+ .+|+++++|||+++||...+..+.+.|... ..++|.+++ ..+.+|
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~----~q~~it~t~-----~~~~~~ 333 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL----PQAIVAGTE-----APPGAA 333 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC----CcEEEEcCC-----CCCCCc
Confidence 58999999999999999 899999999999999999999999888643 134443333 456899
Q ss_pred eEEEEcCCeEEEec
Q psy10223 231 RTAYLCLGDLIYAG 244 (606)
Q Consensus 231 ~v~vL~~G~~v~~G 244 (606)
+++.+.+|++.-..
T Consensus 334 ~~~~~~~~~~~~~~ 347 (349)
T PRK14079 334 LTLRIEAGVFTPEA 347 (349)
T ss_pred eEEEEeccEecCCC
Confidence 99999999875433
No 472
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.43 E-value=2.1e-06 Score=94.06 Aligned_cols=174 Identities=19% Similarity=0.217 Sum_probs=102.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----------ccccCeEEEEcCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----------QLFQTTCGYVNHR 107 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----------~~~~~~i~yv~q~ 107 (606)
...+++++ +.+.+||.++|+|+||+|||||+++|++..+ +..|.+...|..-.+ ..+++.+.++.+.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~ 227 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE-ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATS 227 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC-CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECC
Confidence 35789999 9999999999999999999999999999876 566766665543321 1123334444443
Q ss_pred CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch--hhcccCCCCCH-HHHHHHHHHHHHhhCCCEEEE
Q psy10223 108 TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN--VARRNISELTP-SEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 108 ~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~v~~LSg-GerqRvsIa~aL~~~p~llll 184 (606)
+. ++.+-..- +. ..-.+.+.+...|-.- ..| +|+- -|-+| .|+ +.+
T Consensus 228 d~-----~p~~r~~~-~~-----------~a~t~AE~frd~G~~Vll~~D----slTr~A~A~R-Eis---------l~~ 276 (440)
T TIGR01026 228 DQ-----SPLLRLKG-AY-----------VATAIAEYFRDQGKDVLLLMD----SVTRFAMAQR-EIG---------LAA 276 (440)
T ss_pred CC-----CHHHHHHH-HH-----------HHHHHHHHHHHCCCCEEEEEe----ChHHHHHHHH-HHH---------Hhc
Confidence 32 11111110 00 0011112222222210 011 1110 11111 111 223
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHHhCCc-------EEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 185 DEP--TVNLDPLSTYLIVSMLSSYAKRKSR-------AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 185 DEP--TsgLD~~~~~~i~~~L~~l~~~~g~-------tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.|| +.|+|+.....+.+++.+.... +. ||++..|+- ....+|++.-+.+|+++.++..++.
T Consensus 277 ge~P~~~Gypp~~~~~l~~l~ERag~~-~~GSIT~i~tVl~~~~d~---~dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 277 GEPPATKGYTPSVFSTLPRLLERAGAS-GKGSITAFYTVLVEGDDM---NEPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred CCCCcccccChhHHHHHHHHHHHhccC-CCCeeeEEEEEEccCcCC---CcchhhhhccccceEEEEecchhhC
Confidence 564 5599999999999999987643 44 455554532 2457899999999999999887654
No 473
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.43 E-value=1.1e-07 Score=106.09 Aligned_cols=165 Identities=16% Similarity=0.143 Sum_probs=99.3
Q ss_pred EEee-EEEEeCCeEEEEEcCCCccHHHHHHHH--HcCCCCCCeeEEEECCEeCCccccc---CeEEEEcCCCCCCCCCCH
Q psy10223 43 LKDI-SLEVRPGEVLAVLGSKGSGKRALLEVI--SRRSSGTTRGEIILDGTPMSPQLFQ---TTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 43 L~~v-s~~v~~Ge~~~IlG~nGsGKSTLLk~L--~g~~~~~~~G~I~~~G~~~~~~~~~---~~i~yv~q~~~~~~~lTV 116 (606)
|+.+ .+=+.+|..++|.|+||||||||..-+ .|..+ .-+.-+.+..... ++.++ +..|+..++..--.
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE~-~~~l~~~~~~~G~~~~~~~~~g---- 83 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEES-PQDIIKNARSFGWDLQKLVDEG---- 83 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEecC-HHHHHHHHHHcCCCHHHHhhcC----
Confidence 5554 567899999999999999999998865 34333 1122333332211 11111 12232222100000
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIG--TQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa--~aL~~~p~llllDEPTsgLD~~ 194 (606)
++.+ . .... ....+.+++.+++.+..++..+.+|+|++|||.|+ .++...|+.. ..
T Consensus 84 --~l~~------~-~~~~---~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~ 141 (484)
T TIGR02655 84 --KLFI------L-DASP---DPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SV 141 (484)
T ss_pred --ceEE------E-ecCc---hhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HH
Confidence 0000 0 0000 00112244566777778888889999999999999 6666665443 46
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcch-------H-HhcCCeEEEEc
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSD-------V-LPFLDRTAYLC 236 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~-------i-~~~~D~v~vL~ 236 (606)
.+.++.++++.+++ .|.|+|+++|+.... + ..++|.|+.|+
T Consensus 142 ~r~~l~~Li~~L~~-~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 142 VRREIFRLVARLKQ-IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 77888888888865 689999999975321 2 55889999997
No 474
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.42 E-value=4.1e-07 Score=98.99 Aligned_cols=171 Identities=16% Similarity=0.198 Sum_probs=109.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCe---eEEEECCEeCCc---c------cccCeEEEEcC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMSP---Q------LFQTTCGYVNH 106 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~---G~I~~~G~~~~~---~------~~~~~i~yv~q 106 (606)
...+|+++ +.+.+||.++|+|+||+|||||+++|+|..+ +.. |.|-.+|.++.. + ..|..+++++|
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~-~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ-ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC-CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 35699999 9999999999999999999999999999876 333 445455544421 1 12456899999
Q ss_pred CCCCCCCCCHHHHHHHHHHccCCCCCCH---HHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 107 RTDLIPSLTVEQTLYYAAHLSIGPQVSR---YVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 107 ~~~~~~~lTV~e~l~f~~~~~~~~~~~~---~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
++..+..+++.+++.+.+......+..- -..-.|..++..++++ .
T Consensus 220 d~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl--------------------------------~ 267 (434)
T PRK07196 220 DESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIAL--------------------------------S 267 (434)
T ss_pred CCChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHH--------------------------------h
Confidence 9999999999999987776421110000 0000011111111111 1
Q ss_pred EeCC--CCCCCHHHHHHHHHHHHHHHHh---CCcEEEEEecCCcchHH-hcCCeEEEEcCCeEEEe
Q psy10223 184 LDEP--TVNLDPLSTYLIVSMLSSYAKR---KSRAVLLTMEKPRSDVL-PFLDRTAYLCLGDLIYA 243 (606)
Q Consensus 184 lDEP--TsgLD~~~~~~i~~~L~~l~~~---~g~tii~t~h~~~~~i~-~~~D~v~vL~~G~~v~~ 243 (606)
+.|| +.|-.+..-..+-+++.+..+. +..|.+-+..-+.+++- ..+|.+.-+-||+++-.
T Consensus 268 ~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 268 LGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred cCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 2233 3477777777777777765322 23466666666655543 35688888889999875
No 475
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.38 E-value=5.6e-07 Score=96.76 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 160 ELTPSEHRRVVIGTQLVK---------DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 160 ~LSgGerqRvsIa~aL~~---------~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
.+|.||+|++.||..|+. +|+|++||||+++||+..+..+++.|++. |..+++|+|++
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~ 341 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISL 341 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecCh
Confidence 589999999999999999 99999999999999999999999999753 56888888865
No 476
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.28 E-value=1.4e-06 Score=103.10 Aligned_cols=139 Identities=16% Similarity=0.221 Sum_probs=81.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
..+-+|+++. ..+.++.|.|||++||||+||.++-..--..-|.- .|.. ...++++. ..|.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~----VPa~----~a~i~~~d---~I~t------- 655 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSF----VPAE----SARIGIVD---RIFT------- 655 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCc----eecc----ceEecccC---eeee-------
Confidence 3567788887 67889999999999999999987632100000110 0100 01111111 1110
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQL--VKDPVLLLLDEP---TVNLDPL 194 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL--~~~p~llllDEP---TsgLD~~ 194 (606)
++|- .|...+++|.=+.....++..| +++++++++||| |+.+|..
T Consensus 656 ---------------------------riga---~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~ 705 (854)
T PRK05399 656 ---------------------------RIGA---SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL 705 (854)
T ss_pred ---------------------------ccCc---ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH
Confidence 1111 1223345565555555555554 458999999999 8888844
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCe
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDR 231 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~ 231 (606)
. ....+++.+.+..+.++++++|. .++.+++++
T Consensus 706 a--ia~aile~l~~~~~~~~l~aTH~--~el~~l~~~ 738 (854)
T PRK05399 706 S--IAWAVAEYLHDKIGAKTLFATHY--HELTELEEK 738 (854)
T ss_pred H--HHHHHHHHHHhcCCceEEEEech--HHHHHHhhh
Confidence 4 34455666665446778888886 467777765
No 477
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.26 E-value=2.4e-06 Score=102.46 Aligned_cols=80 Identities=20% Similarity=0.205 Sum_probs=69.5
Q ss_pred ccCCCCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHh
Q psy10223 156 RNISELTPSEHRRVVIGTQLV------KD--PVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLP 227 (606)
Q Consensus 156 ~~v~~LSgGerqRvsIa~aL~------~~--p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~ 227 (606)
+.+..|||||+-.++||.+|+ .+ -+++++||||..||+.+...++++|..+... +.+|+|++|++ ++.+
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~e--el~e 887 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVE--ELKE 887 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChH--HHHH
Confidence 467899999999888877665 45 6999999999999999999999999999764 88999999974 7889
Q ss_pred cCCeEEEEcCC
Q psy10223 228 FLDRTAYLCLG 238 (606)
Q Consensus 228 ~~D~v~vL~~G 238 (606)
.+|.++.+...
T Consensus 888 ~~~~~i~V~k~ 898 (908)
T COG0419 888 RADVRIRVKKD 898 (908)
T ss_pred hCCeEEEEEec
Confidence 99999998763
No 478
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.22 E-value=4.6e-05 Score=90.29 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=40.8
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q psy10223 174 QLVKDPVLLLLDEPTVNLD-PLSTYLIVSMLSSYAKRKSRAVLLTMEKPR 222 (606)
Q Consensus 174 aL~~~p~llllDEPTsgLD-~~~~~~i~~~L~~l~~~~g~tii~t~h~~~ 222 (606)
.+..+|.++++|||...|| +..+..+.+.++...+ .|..+++++|.+.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH
Confidence 3557899999999999999 8889999999999865 5778888888764
No 479
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.21 E-value=2.9e-06 Score=92.69 Aligned_cols=171 Identities=16% Similarity=0.203 Sum_probs=105.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECC---EeCCc---cc-----ccCeEEEE---
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSP---QL-----FQTTCGYV--- 104 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G---~~~~~---~~-----~~~~i~yv--- 104 (606)
...+++++ +.+.+||.++|+|+||+|||||+++|++..+....|.|.+.| .++.. +. .++.+..+
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 35689988 999999999999999999999999999987423447777745 44321 11 12233444
Q ss_pred cCCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-----hhhcccCCCCCHHHHHHHHHHHHHhh
Q psy10223 105 NHRTD--LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-----NVARRNISELTPSEHRRVVIGTQLVK 177 (606)
Q Consensus 105 ~q~~~--~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-----~~~~~~v~~LSgGerqRvsIa~aL~~ 177 (606)
+|++. +.|.+ +..++.-..+.+........+...++.+++++++|. .....+++.+|
T Consensus 230 ~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS--------------- 293 (442)
T PRK06315 230 DQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS--------------- 293 (442)
T ss_pred CCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh---------------
Confidence 77653 44544 566655544433211123345667888999999884 33444455444
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HhCCcEEEEEecCCcchHH-hcCCeEEEEcCCeEEEecCh
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYA--KRKSRAVLLTMEKPRSDVL-PFLDRTAYLCLGDLIYAGPT 246 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~--~~~g~tii~t~h~~~~~i~-~~~D~v~vL~~G~~v~~G~~ 246 (606)
.+-+++.+.. +.+..|.+-+..-+.+++- ...|.+.-+-||+++-+-..
T Consensus 294 --------------------~l~~llERag~~~~GSITai~tVl~~gdD~~dpi~d~~~~i~dg~ivLsr~l 345 (442)
T PRK06315 294 --------------------TLPKLLERSGASDKGTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNAL 345 (442)
T ss_pred --------------------HhHHHHHHhcCCCCcceeeeEEEEecCCCCCcccHHHhhhhcceEEEEeccH
Confidence 2223332221 2233566666555554443 35688888889999886543
No 480
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.21 E-value=4.2e-05 Score=77.35 Aligned_cols=152 Identities=20% Similarity=0.293 Sum_probs=78.4
Q ss_pred EEEE-EEEeecccccCceeeeeeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHc--------CCCCCCee
Q psy10223 13 YLKI-DLQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR--------RSSGTTRG 83 (606)
Q Consensus 13 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g--------~~~~~~~G 83 (606)
.+++ +.+|+.+...- .+++.+-+|+.+.-+...++.|.|||.+||||+||.++- ..-+..+.
T Consensus 11 ~l~i~~~~HPll~~~~---------~~~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~ 81 (235)
T PF00488_consen 11 SLKIKEGRHPLLEEKL---------ENKKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESA 81 (235)
T ss_dssp EEEEEEE--TTHHHHT---------TTSSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEE
T ss_pred CEEEEeccCCEEeccc---------cCCceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeeccc
Confidence 7777 88887653221 122346677766544446999999999999999998752 21111222
Q ss_pred EEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCH
Q psy10223 84 EIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTP 163 (606)
Q Consensus 84 ~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSg 163 (606)
++.+ +.+-...+..++.+...++- |..+ -+++..+++
T Consensus 82 ~i~~---------~d~I~t~~~~~d~~~~~~S~-----F~~E------------~~~~~~il~----------------- 118 (235)
T PF00488_consen 82 EIPI---------FDRIFTRIGDDDSIESGLST-----FMAE------------MKRLSSILR----------------- 118 (235)
T ss_dssp EEE-----------SEEEEEES---SSTTSSSH-----HHHH------------HHHHHHHHH-----------------
T ss_pred cccc---------ccEEEeeccccccccccccc-----HHHh------------HHHHHhhhh-----------------
Confidence 2221 11111222222322222111 1111 112223332
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHhCCcEEEEEecCCcchHHhcC
Q psy10223 164 SEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS-YAKRKSRAVLLTMEKPRSDVLPFL 229 (606)
Q Consensus 164 GerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~-l~~~~g~tii~t~h~~~~~i~~~~ 229 (606)
.+.+.+++++||+.+|=++.....+...+-+ +.++.+..+++++|.. ++.+..
T Consensus 119 -----------~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~--~l~~~~ 172 (235)
T PF00488_consen 119 -----------NATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFH--ELAELL 172 (235)
T ss_dssp -----------H--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-G--GGGGHH
T ss_pred -----------hcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccc--hhHHHh
Confidence 2346789999999999999998886655544 4443467778888864 444443
No 481
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.20 E-value=8.7e-07 Score=85.61 Aligned_cols=66 Identities=26% Similarity=0.353 Sum_probs=44.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-ccc-CeEEEEcCCCCCCCCCCHHHHHHH
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-LFQ-TTCGYVNHRTDLIPSLTVEQTLYY 122 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-~~~-~~i~yv~q~~~~~~~lTV~e~l~f 122 (606)
+||+++|+|+||||||||+++|++++. + +.++|.++... ..+ ...++.+|+...++.+++.+++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS-A----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-C----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 699999999999999999999999875 3 46788765421 111 123455555444455555555443
No 482
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.19 E-value=2.3e-06 Score=105.97 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=52.8
Q ss_pred cccCCCCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy10223 155 RRNISELTPSEHRRVV----IGTQ--------LVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEK 220 (606)
Q Consensus 155 ~~~v~~LSgGerqRvs----Ia~a--------L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~ 220 (606)
++.+++||||||||++ +|.+ +..+|++++|||||+|||+.++..++++++++ +.++|++++.
T Consensus 1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~ 1315 (1353)
T TIGR02680 1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSER 1315 (1353)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccc
Confidence 4457899999999996 5644 55899999999999999999999999999876 5778888764
No 483
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.19 E-value=3.5e-06 Score=91.93 Aligned_cols=172 Identities=15% Similarity=0.165 Sum_probs=99.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECC---EeCCc-------ccccCeEEEEcCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSP-------QLFQTTCGYVNHRTD 109 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G---~~~~~-------~~~~~~i~yv~q~~~ 109 (606)
..+++.++ .+.+||.++|+||||+||||||++|+++.+ ++.|.|.+.| .++.. ...++.+++++|.+.
T Consensus 153 i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~-pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 153 VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA-FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC-CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 56888886 899999999999999999999999999877 6789888864 44321 113467999999875
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCH-HHHHH-HHHHHHHhhCCCEEEEeCC
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTP-SEHRR-VVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSg-GerqR-vsIa~aL~~~p~llllDEP 187 (606)
- ..+-+. ++. ..-.+.|.+..-|-.-. -...+|+- -+-+| +++ .+.||
T Consensus 231 ~-----~~~r~~-~~~-----------~a~~iAEyfrd~G~~Vl--l~~DslTr~A~A~rEisl-----------~~ge~ 280 (450)
T PRK06002 231 S-----PMMRRL-APL-----------TATAIAEYFRDRGENVL--LIVDSVTRFAHAAREVAL-----------AAGEP 280 (450)
T ss_pred C-----HHHHHH-HHH-----------HHHHHHHHHHHcCCCEE--EeccchHHHHHHHHHHHH-----------hcCCC
Confidence 2 111111 000 00011111211121100 00011110 01111 111 12343
Q ss_pred --CCCCCHHHHHHHHHHHHHHHHh----CCcEEEEEecCCcchHHh-cCCeEEEEcCCeEEEe
Q psy10223 188 --TVNLDPLSTYLIVSMLSSYAKR----KSRAVLLTMEKPRSDVLP-FLDRTAYLCLGDLIYA 243 (606)
Q Consensus 188 --TsgLD~~~~~~i~~~L~~l~~~----~g~tii~t~h~~~~~i~~-~~D~v~vL~~G~~v~~ 243 (606)
+.|--+.--..+-+++.+..+. +..|.+-|..-+.+++-+ .+|.+.-+-||+++-+
T Consensus 281 P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~tvl~~~dd~~dpI~d~~~~i~Dg~ivLs 343 (450)
T PRK06002 281 PVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLD 343 (450)
T ss_pred CccccCCccHHHHhhHHHHHhccCCCCCeeeeEEEEEEecCCCCCCccHHHHHhhcceEEEEc
Confidence 3467776666777777766531 235667776666666533 6788888888998874
No 484
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.17 E-value=1.3e-05 Score=88.54 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=46.7
Q ss_pred hCCCEEEEeCCCCC----CC-----HHHHHHHHHHHHHHHHhCCcEEEEEecCCcc-------hHHhcCCeEEEEcCCe
Q psy10223 177 KDPVLLLLDEPTVN----LD-----PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRS-------DVLPFLDRTAYLCLGD 239 (606)
Q Consensus 177 ~~p~llllDEPTsg----LD-----~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~-------~i~~~~D~v~vL~~G~ 239 (606)
.+|++++.|.-++= ++ .....++...|.+++++.|.|++++.|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 47999999987641 11 2345567777888888899999999885432 1577899999998755
No 485
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.16 E-value=5.7e-06 Score=101.64 Aligned_cols=163 Identities=20% Similarity=0.325 Sum_probs=89.9
Q ss_pred eEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy10223 46 ISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAH 125 (606)
Q Consensus 46 vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~ 125 (606)
+++..+++++++|+|++|+|||||++.+++.......|.+.+++..+... +. .+-.++... .++...
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~--~~--~~~~~~~~~-------~~~~~~-- 266 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS--ME--IYSSANPDD-------YNMKLH-- 266 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc--hh--hcccccccc-------cchhHH--
Confidence 45677889999999999999999999998776544578888865322210 00 000000000 000000
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy10223 126 LSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205 (606)
Q Consensus 126 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~ 205 (606)
..++.+.++++..++ .+..+ ++.|+| |..++-+++||+- |... .++.|+.
T Consensus 267 ----------l~~~~l~~il~~~~~------~~~~~-~~~~~~------L~~krvLLVLDdv----~~~~---~l~~L~~ 316 (1153)
T PLN03210 267 ----------LQRAFLSEILDKKDI------KIYHL-GAMEER------LKHRKVLIFIDDL----DDQD---VLDALAG 316 (1153)
T ss_pred ----------HHHHHHHHHhCCCCc------ccCCH-HHHHHH------HhCCeEEEEEeCC----CCHH---HHHHHHh
Confidence 011223344433333 12222 566666 3466678888983 4433 3444443
Q ss_pred HHH--hCCcEEEEEecCCcchHHhc-CCeEEEEcCCeEEEecChhHHHHHHHHcCC
Q psy10223 206 YAK--RKSRAVLLTMEKPRSDVLPF-LDRTAYLCLGDLIYAGPTRLMLEYFRSIGF 258 (606)
Q Consensus 206 l~~--~~g~tii~t~h~~~~~i~~~-~D~v~vL~~G~~v~~G~~~~~~~~f~~~G~ 258 (606)
..+ ..|.+||+|+|+.. .+... +|+++.+.. -+.+++.+.|....|
T Consensus 317 ~~~~~~~GsrIIiTTrd~~-vl~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 317 QTQWFGSGSRIIVITKDKH-FLRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred hCccCCCCcEEEEEeCcHH-HHHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 322 24789999998643 23222 577655531 244678888876544
No 486
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.09 E-value=2.7e-05 Score=83.86 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=44.6
Q ss_pred hCCCEEEEeCCC----CCCC-----HHHHHHHHHHHHHHHHhCCcEEEEEecCCcc-------hHHhcCCeEEEEcCC
Q psy10223 177 KDPVLLLLDEPT----VNLD-----PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRS-------DVLPFLDRTAYLCLG 238 (606)
Q Consensus 177 ~~p~llllDEPT----sgLD-----~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~-------~i~~~~D~v~vL~~G 238 (606)
.+|+++++|+-. ..+| .....++...|++++++.+.+++++.|-..+ .+.+++|-|+.++..
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 489999999963 3333 2334566777888888889999998774321 267889999988754
No 487
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.05 E-value=4.5e-06 Score=66.17 Aligned_cols=36 Identities=31% Similarity=0.574 Sum_probs=28.5
Q ss_pred EEeeEEEEeC-CeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 43 LKDISLEVRP-GEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 43 L~~vs~~v~~-Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.++.++.+.+ |++++|.|||||||||||++|.-.+-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3445666775 57999999999999999999875443
No 488
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.05 E-value=4.6e-05 Score=73.84 Aligned_cols=66 Identities=9% Similarity=0.162 Sum_probs=47.0
Q ss_pred HHHHHHHHcCCc-hhhcccCCCCCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q psy10223 140 RIRQVLADLALS-NVARRNISELTPSEHRRVV--IGTQLVK-DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209 (606)
Q Consensus 140 ~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvs--Ia~aL~~-~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~ 209 (606)
++.+.++..++. -....++..+|+||++++. +++.+-. +++++ |+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 345566666654 2344567789999999987 5555543 33443 99999999999999999987653
No 489
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.05 E-value=1.2e-05 Score=92.29 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=74.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCC-------CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHH
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSSG-------TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAA 124 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-------~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~ 124 (606)
..+.++|+||||+|||||+++|.+..+. ...+-+.++|..+... .+. + ++-.+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d-~~~----------------i-~~~llg- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWD-PRE----------------V-TNPLLG- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCC-HHH----------------H-hHHhcC-
Confidence 4567999999999999999999886531 0123355555433100 000 0 011111
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy10223 125 HLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204 (606)
Q Consensus 125 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~ 204 (606)
.... ...+..++.++..|+.+..+..+..+||| +|++|| +..||+..+..+.+.|+
T Consensus 235 ------~~~~-~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le 290 (615)
T TIGR02903 235 ------SVHD-PIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLE 290 (615)
T ss_pred ------CccH-HHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHh
Confidence 0111 11234556688889988888889999999 999999 79999999999999997
Q ss_pred H
Q psy10223 205 S 205 (606)
Q Consensus 205 ~ 205 (606)
+
T Consensus 291 ~ 291 (615)
T TIGR02903 291 D 291 (615)
T ss_pred h
Confidence 5
No 490
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.03 E-value=9.1e-06 Score=69.70 Aligned_cols=51 Identities=24% Similarity=0.327 Sum_probs=39.3
Q ss_pred cccCCCCCHHHH-HHHHHHHH------Hhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy10223 155 RRNISELTPSEH-RRVVIGTQ------LVK------DPVLLLLDEPTVNLDPLSTYLIVSMLSS 205 (606)
Q Consensus 155 ~~~v~~LSgGer-qRvsIa~a------L~~------~p~llllDEPTsgLD~~~~~~i~~~L~~ 205 (606)
.+..+++||||| ..+.++.+ +-. .|++++||||+++||+..+..++++|++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 456789999999 44444433 223 3799999999999999999999999874
No 491
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.02 E-value=0.00021 Score=72.56 Aligned_cols=115 Identities=22% Similarity=0.204 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q psy10223 392 PLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYINIIF 471 (606)
Q Consensus 392 ~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~~~~~ 471 (606)
..+++++.+...-...+...+...++.+..|......+..+...+.+......+++..+++...+....+...+.+...+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 210 (286)
T COG0842 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILP 210 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45566666666666555555555555556663333333333333333333344444433322333333343344344566
Q ss_pred HHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHH
Q psy10223 472 LVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLS 506 (606)
Q Consensus 472 ~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~ 506 (606)
+..++|.+.|.+.+|.|++|+.+++|..|+.+++-
T Consensus 211 ~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~ 245 (286)
T COG0842 211 LGFLSGVFFPLELLPAWLQGISYINPLTYAIDALR 245 (286)
T ss_pred HHHHccccCchhhhHHHHHHHHHHccHHHHHHHHH
Confidence 77889999999999999999999999999999994
No 492
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.02 E-value=1.9e-05 Score=71.43 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hCCcEEEEEecCC
Q psy10223 166 HRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK----RKSRAVLLTMEKP 221 (606)
Q Consensus 166 rqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~----~~g~tii~t~h~~ 221 (606)
++..........++.++++||.-.. +......+.+.+..... ..+..+|++++.+
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 4555556667788999999998765 55666777888877643 2467777777654
No 493
>PRK15066 inner membrane transport permease; Provisional
Probab=98.01 E-value=0.00021 Score=73.06 Aligned_cols=116 Identities=10% Similarity=0.012 Sum_probs=71.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Q psy10223 388 LYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYI 467 (606)
Q Consensus 388 ~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~ 467 (606)
=-++..+.+++++...-..+++.++..++.+...|.+.. ........+++........+..++.......+.+.....+
T Consensus 100 p~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~-~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~ 178 (257)
T PRK15066 100 PVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH-HWGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTFV 178 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 357778888999887766666655555554444465432 2222222222212212222444444444433444433333
Q ss_pred HHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHH
Q psy10223 468 NIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFL 505 (606)
Q Consensus 468 ~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal 505 (606)
+.+++..||.+.|.+.+|+|++|+.++||+.|..|++
T Consensus 179 -~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~ 215 (257)
T PRK15066 179 -LTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAF 215 (257)
T ss_pred -HHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHH
Confidence 4566677999999999999999999999999999998
No 494
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=97.99 E-value=5.7e-05 Score=89.57 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=46.9
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHhCCcEEEEEecCCcc--------hHHhcCCeEEEEcC
Q psy10223 175 LVKDPVLLLLDEPTVNLD-PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRS--------DVLPFLDRTAYLCL 237 (606)
Q Consensus 175 L~~~p~llllDEPTsgLD-~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~--------~i~~~~D~v~vL~~ 237 (606)
+-.+|+++++|||+.+|| +..+..+.+.++...+ .|.++++++|.+.+ .+.+.++-.++|.+
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~ 702 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRK-KNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPN 702 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCC
Confidence 446899999999999999 7888999999999875 57788888887642 23445555555544
No 495
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.98 E-value=9.8e-06 Score=75.44 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy10223 139 ARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQL-----VKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206 (606)
Q Consensus 139 ~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL-----~~~p~llllDEPTsgLD~~~~~~i~~~L~~l 206 (606)
.++.+.+...+.. -....+...++++++++....... ...++++ |++++|.....++.+.|.++
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3445566665543 123445667899998887666553 2345555 99999999999999888764
No 496
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=97.97 E-value=0.00025 Score=72.23 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=77.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Q psy10223 389 YSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTS-TDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYI 467 (606)
Q Consensus 389 Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~-~~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~ 467 (606)
.++..+.+++++...-..+++.++..++.++. |.+.. .+.......+++...+..+++..++...++...+......+
T Consensus 99 ~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~-g~~~~~~~~l~~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~i~~~~ 177 (253)
T TIGR03861 99 LPRPFLLFCKLLASALISLLQVYAFLAIAALV-GVQPPVWGYVSVLPALVLVAFMLGALGLALSNLIRQLENFAGVMNFV 177 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 46778899999999887777766655544432 54322 23333333334444555667777777766554444433333
Q ss_pred HHHHHHhheeeecCCCCh---hhHHHHHhhhcHHHHHHHHH
Q psy10223 468 NIIFLVLGSGYLRSFRSM---AEWLVYMSYGTQARYVGAFL 505 (606)
Q Consensus 468 ~~~~~~l~~Gf~i~~~~m---p~w~~Wi~yisp~~Ya~eal 505 (606)
+.+++..||.+.|.+.+ |.|++|+.++||+.|..|++
T Consensus 178 -~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~ 217 (253)
T TIGR03861 178 -IFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELV 217 (253)
T ss_pred -HHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHH
Confidence 45666779999888665 89999999999999999988
No 497
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.95 E-value=3e-06 Score=83.85 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=26.1
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
++|++++|.||||||||||++.|+++.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999999865
No 498
>PRK08149 ATP synthase SpaL; Validated
Probab=97.95 E-value=1.7e-05 Score=86.45 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=53.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCe---eEEEECCEeCCc---c----cccCeEEEEcCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMSP---Q----LFQTTCGYVNHRT 108 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~---G~I~~~G~~~~~---~----~~~~~i~yv~q~~ 108 (606)
...+++++ +.+.+||.++|+|+||+|||||+++|++... ++. |.|-.+|.++.. + ..++++++|....
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~-~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE-ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC-CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 35799999 9999999999999999999999999999876 444 888888887642 1 1235667765544
No 499
>PRK01889 GTPase RsgA; Reviewed
Probab=97.93 E-value=1.4e-05 Score=85.85 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=54.6
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCC
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~ 113 (606)
++.+.-.+++|++++|+|+||+|||||++.|+|... +..|+|..++..-.....++.+.+++|...++.+
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~-~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt 254 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV-QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT 254 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc-cceeeEEECCCCCcchhhhccEEEecCCCeecCC
Confidence 444555677999999999999999999999999887 6889999987433222335678899988776654
No 500
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.91 E-value=1.2e-05 Score=81.00 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=47.8
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeE----EEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHc
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGE----IILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHL 126 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~----I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~ 126 (606)
.+..+++|.||||||||||.+.|++.++ +..|. |.+++..... ..+...+++.+.+ ..+.+++.+.+.+...+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~-~~~g~~~v~i~~D~~~~~~-~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ-QDGELPAIQVPMDGFHLDN-AVLDAHGLRPRKG-APETFDVAGLAALLRRL 107 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh-hccCCceEEEecccccCCH-HHHHhcccccccC-CCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999987 56676 5555533221 1223346665533 33556666665554443
Done!