Query psy10223
Match_columns 606
No_of_seqs 559 out of 3076
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 21:02:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 9.5E-48 3.3E-52 406.8 30.1 207 39-250 40-252 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 6E-48 2.1E-52 408.0 27.2 210 37-251 14-228 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 1.3E-47 4.5E-52 408.1 29.4 209 38-251 14-223 (381)
4 3gfo_A Cobalt import ATP-bindi 100.0 2.1E-47 7E-52 391.8 27.8 207 40-251 21-233 (275)
5 3tif_A Uncharacterized ABC tra 100.0 1.9E-47 6.6E-52 383.8 26.8 207 40-249 18-232 (235)
6 2olj_A Amino acid ABC transpor 100.0 5.2E-47 1.8E-51 386.6 28.1 209 37-251 34-248 (263)
7 1b0u_A Histidine permease; ABC 100.0 4.8E-47 1.7E-51 386.9 27.6 206 39-250 18-241 (262)
8 1z47_A CYSA, putative ABC-tran 100.0 6.9E-47 2.3E-51 400.0 28.3 209 38-251 26-235 (355)
9 2it1_A 362AA long hypothetical 100.0 1.1E-46 3.8E-51 399.7 28.0 209 38-251 14-223 (362)
10 1vpl_A ABC transporter, ATP-bi 100.0 1.6E-46 5.3E-51 381.7 27.8 209 37-251 25-235 (256)
11 2pcj_A ABC transporter, lipopr 100.0 1.4E-46 4.8E-51 374.9 26.8 201 39-246 16-223 (224)
12 1g6h_A High-affinity branched- 100.0 6E-47 2.1E-51 385.2 24.6 207 39-248 19-239 (257)
13 2yyz_A Sugar ABC transporter, 100.0 8.8E-47 3E-51 400.0 26.6 209 38-251 14-223 (359)
14 4g1u_C Hemin import ATP-bindin 100.0 6.3E-47 2.1E-51 386.8 24.3 206 38-250 22-236 (266)
15 1g29_1 MALK, maltose transport 100.0 1.9E-46 6.5E-51 399.7 28.7 209 38-251 14-229 (372)
16 1oxx_K GLCV, glucose, ABC tran 100.0 1.2E-46 4E-51 398.9 24.6 208 39-251 15-230 (353)
17 1v43_A Sugar-binding transport 100.0 1.9E-46 6.5E-51 399.2 25.5 209 38-251 22-231 (372)
18 1ji0_A ABC transporter; ATP bi 100.0 4.2E-46 1.4E-50 375.3 24.3 205 39-250 18-227 (240)
19 3d31_A Sulfate/molybdate ABC t 100.0 5.3E-46 1.8E-50 392.7 25.1 204 38-250 12-216 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 1.2E-45 4E-50 371.9 23.2 202 42-251 14-216 (240)
21 2yz2_A Putative ABC transporte 100.0 2.8E-45 9.4E-50 374.8 24.5 205 40-251 20-227 (266)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 7.6E-45 2.6E-49 368.2 23.9 207 39-248 15-230 (250)
23 2ihy_A ABC transporter, ATP-bi 100.0 4.1E-45 1.4E-49 375.7 20.6 210 37-249 31-250 (279)
24 2nq2_C Hypothetical ABC transp 100.0 5.9E-44 2E-48 362.2 26.0 198 39-249 17-215 (253)
25 2ixe_A Antigen peptide transpo 100.0 1.4E-44 4.7E-49 370.5 20.2 205 40-251 32-245 (271)
26 2zu0_C Probable ATP-dependent 100.0 1.5E-43 5.2E-48 362.0 27.3 219 37-258 30-260 (267)
27 2qi9_C Vitamin B12 import ATP- 100.0 4.7E-44 1.6E-48 362.0 21.3 197 41-249 14-220 (249)
28 2ff7_A Alpha-hemolysin translo 100.0 1.4E-43 4.9E-48 358.2 23.5 197 39-250 21-231 (247)
29 3nh6_A ATP-binding cassette SU 100.0 1.7E-43 5.7E-48 367.6 19.8 198 39-251 66-277 (306)
30 1mv5_A LMRA, multidrug resista 100.0 4.3E-43 1.5E-47 353.9 18.0 199 39-251 14-226 (243)
31 2pjz_A Hypothetical protein ST 100.0 1.6E-42 5.6E-47 353.3 21.7 195 40-251 18-215 (263)
32 1sgw_A Putative ABC transporte 100.0 4.5E-43 1.6E-47 346.9 16.7 191 37-240 20-210 (214)
33 2ghi_A Transport protein; mult 100.0 6.8E-42 2.3E-46 348.5 23.2 196 40-251 33-242 (260)
34 3gd7_A Fusion complex of cysti 100.0 5.4E-42 1.8E-46 367.1 16.3 197 38-251 32-242 (390)
35 2pze_A Cystic fibrosis transme 100.0 7E-41 2.4E-45 334.8 21.5 186 39-250 20-217 (229)
36 2cbz_A Multidrug resistance-as 100.0 1.2E-40 4.2E-45 334.8 20.7 193 39-251 17-217 (237)
37 3b60_A Lipid A export ATP-bind 100.0 1.2E-39 4.2E-44 367.7 24.2 198 40-251 356-567 (582)
38 3b5x_A Lipid A export ATP-bind 100.0 7.1E-40 2.4E-44 369.7 21.3 198 40-251 356-567 (582)
39 3qf4_A ABC transporter, ATP-bi 100.0 2.5E-40 8.5E-45 373.5 16.5 202 39-251 355-566 (587)
40 2yl4_A ATP-binding cassette SU 100.0 8.6E-40 3E-44 369.9 20.9 200 40-251 357-570 (595)
41 4a82_A Cystic fibrosis transme 100.0 8.5E-40 2.9E-44 368.7 18.1 198 39-251 353-564 (578)
42 3qf4_B Uncharacterized ABC tra 100.0 3.5E-39 1.2E-43 364.9 19.2 198 39-251 367-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 1.1E-38 3.9E-43 329.4 19.2 185 40-251 51-247 (290)
44 4f4c_A Multidrug resistance pr 100.0 4.2E-37 1.4E-41 374.8 19.4 200 39-251 1091-1304(1321)
45 3bk7_A ABC transporter ATP-bin 100.0 6.5E-36 2.2E-40 337.4 21.4 192 41-251 370-563 (607)
46 4f4c_A Multidrug resistance pr 100.0 1.1E-35 3.7E-40 362.4 23.7 199 38-251 429-641 (1321)
47 3g5u_A MCG1178, multidrug resi 100.0 3.3E-36 1.1E-40 366.0 18.1 202 39-251 402-613 (1284)
48 1yqt_A RNAse L inhibitor; ATP- 100.0 7E-36 2.4E-40 333.4 18.4 193 41-252 300-494 (538)
49 3g5u_A MCG1178, multidrug resi 100.0 2.2E-35 7.4E-40 358.9 20.2 199 40-251 1046-1258(1284)
50 3ozx_A RNAse L inhibitor; ATP 100.0 6.4E-35 2.2E-39 325.2 19.9 193 41-250 282-476 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 9.3E-35 3.2E-39 327.5 18.2 194 40-252 360-560 (608)
52 3ux8_A Excinuclease ABC, A sub 100.0 7.2E-35 2.5E-39 334.0 15.6 223 22-250 13-297 (670)
53 2iw3_A Elongation factor 3A; a 100.0 1E-32 3.6E-37 321.9 23.1 187 38-251 446-635 (986)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 8E-34 2.7E-38 316.8 10.8 182 41-238 36-234 (538)
55 3bk7_A ABC transporter ATP-bin 100.0 8.6E-34 3E-38 320.0 10.4 183 41-239 106-305 (607)
56 2iw3_A Elongation factor 3A; a 100.0 1.9E-32 6.4E-37 319.8 14.8 192 40-245 686-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 4.8E-32 1.7E-36 310.5 17.4 197 40-250 335-639 (670)
58 3ozx_A RNAse L inhibitor; ATP 100.0 1.1E-31 3.8E-36 299.1 7.5 175 50-240 22-215 (538)
59 3j16_B RLI1P; ribosome recycli 100.0 6.5E-31 2.2E-35 296.2 13.6 188 41-242 92-301 (608)
60 3pih_A Uvrabc system protein A 100.0 2.9E-29 9.9E-34 292.6 18.2 199 41-251 598-902 (916)
61 2r6f_A Excinuclease ABC subuni 100.0 2.2E-29 7.5E-34 292.0 15.9 198 41-250 638-941 (972)
62 2vf7_A UVRA2, excinuclease ABC 100.0 2.7E-29 9.2E-34 290.7 16.2 198 41-250 511-826 (842)
63 2ygr_A Uvrabc system protein A 100.0 2.5E-28 8.5E-33 284.1 17.9 198 42-251 657-960 (993)
64 4aby_A DNA repair protein RECN 99.9 2.5E-27 8.6E-32 255.8 20.2 199 40-244 48-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 99.9 4.1E-31 1.4E-35 289.1 -9.8 186 44-250 129-337 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1E-24 3.5E-29 232.3 16.3 85 155-242 274-364 (365)
67 1e69_A Chromosome segregation 99.9 1.6E-24 5.4E-29 226.9 12.0 94 153-250 212-312 (322)
68 3b85_A Phosphate starvation-in 99.9 2.4E-27 8.3E-32 233.3 -9.3 141 38-221 11-158 (208)
69 1tq4_A IIGP1, interferon-induc 99.9 6.4E-27 2.2E-31 252.0 -13.1 171 40-232 36-247 (413)
70 1ye8_A Protein THEP1, hypothet 99.9 9.4E-25 3.2E-29 209.6 1.6 146 55-242 2-159 (178)
71 4gp7_A Metallophosphoesterase; 99.9 2.8E-24 9.6E-29 204.6 3.1 143 45-221 1-159 (171)
72 1znw_A Guanylate kinase, GMP k 99.9 8.7E-27 3E-31 228.4 -17.5 183 38-236 7-202 (207)
73 3b9q_A Chloroplast SRP recepto 99.9 5.6E-24 1.9E-28 220.8 -2.7 175 43-240 90-284 (302)
74 2v9p_A Replication protein E1; 99.9 1.2E-25 4.1E-30 232.9 -17.3 158 40-256 113-271 (305)
75 3sop_A Neuronal-specific septi 99.9 4.8E-24 1.7E-28 217.9 -6.9 146 55-220 4-149 (270)
76 2vf7_A UVRA2, excinuclease ABC 99.8 8.9E-21 3E-25 219.6 14.4 109 138-250 357-474 (842)
77 2og2_A Putative signal recogni 99.8 9.2E-23 3.2E-27 216.0 -2.3 173 44-239 148-340 (359)
78 1cr0_A DNA primase/helicase; R 99.8 3.7E-22 1.3E-26 205.9 2.2 186 40-240 22-237 (296)
79 2dpy_A FLII, flagellum-specifi 99.8 6.9E-23 2.4E-27 222.8 -7.7 179 39-249 144-342 (438)
80 2pt7_A CAG-ALFA; ATPase, prote 99.8 8.5E-22 2.9E-26 207.0 -0.7 132 42-240 160-292 (330)
81 1z6g_A Guanylate kinase; struc 99.8 1.2E-24 4.2E-29 215.3 -22.0 170 41-237 11-193 (218)
82 2o5v_A DNA replication and rep 99.8 7.4E-20 2.5E-24 193.9 12.1 85 156-249 260-354 (359)
83 3qkt_A DNA double-strand break 99.8 5.3E-19 1.8E-23 186.3 18.3 80 154-236 242-327 (339)
84 2jeo_A Uridine-cytidine kinase 99.8 1.6E-21 5.4E-26 196.0 -1.3 179 38-253 10-189 (245)
85 3pih_A Uvrabc system protein A 99.8 5.9E-20 2E-24 214.4 9.7 157 75-251 390-560 (916)
86 3aez_A Pantothenate kinase; tr 99.8 5.4E-22 1.9E-26 206.8 -8.2 123 50-193 87-209 (312)
87 1tf7_A KAIC; homohexamer, hexa 99.8 2.9E-19 9.8E-24 199.1 9.8 156 47-239 275-444 (525)
88 3thx_A DNA mismatch repair pro 99.8 6.8E-19 2.3E-23 206.3 12.9 171 11-249 629-811 (934)
89 4ad8_A DNA repair protein RECN 99.8 4.8E-19 1.6E-23 196.9 10.4 78 157-238 393-473 (517)
90 2obl_A ESCN; ATPase, hydrolase 99.8 2.3E-20 7.8E-25 197.2 -1.8 178 39-249 58-253 (347)
91 2r6f_A Excinuclease ABC subuni 99.8 3.1E-18 1E-22 199.0 14.6 135 112-250 450-599 (972)
92 2o8b_B DNA mismatch repair pro 99.8 7.9E-20 2.7E-24 216.6 0.6 161 39-248 768-939 (1022)
93 1tf7_A KAIC; homohexamer, hexa 99.7 1.4E-21 4.7E-26 217.8 -14.3 170 39-239 24-211 (525)
94 2ygr_A Uvrabc system protein A 99.7 4.7E-18 1.6E-22 198.1 13.3 133 111-251 466-617 (993)
95 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 1.3E-17 4.3E-22 155.1 10.5 83 154-239 51-141 (148)
96 3thx_B DNA mismatch repair pro 99.7 2.1E-18 7.2E-23 201.6 6.0 146 39-232 659-805 (918)
97 4a74_A DNA repair and recombin 99.7 1.2E-18 4.2E-23 171.5 3.0 153 48-239 20-201 (231)
98 2eyu_A Twitching motility prot 99.7 8.1E-19 2.8E-23 178.3 0.7 132 41-237 15-147 (261)
99 2ehv_A Hypothetical protein PH 99.7 7.7E-19 2.6E-23 175.1 0.4 163 48-236 25-206 (251)
100 3asz_A Uridine kinase; cytidin 99.7 1E-20 3.4E-25 184.9 -13.1 145 50-220 3-160 (211)
101 2qnr_A Septin-2, protein NEDD5 99.7 6.7E-20 2.3E-24 190.1 -7.8 158 37-221 8-167 (301)
102 1rj9_A FTSY, signal recognitio 99.7 6.6E-19 2.3E-23 182.8 -5.4 149 52-221 101-258 (304)
103 1ewq_A DNA mismatch repair pro 99.7 5.6E-18 1.9E-22 195.3 0.6 134 39-229 565-704 (765)
104 2w0m_A SSO2452; RECA, SSPF, un 99.7 6.6E-17 2.3E-21 158.8 8.0 168 41-238 10-192 (235)
105 1nlf_A Regulatory protein REPA 99.7 2.2E-16 7.7E-21 161.3 10.6 151 49-221 26-181 (279)
106 1wb9_A DNA mismatch repair pro 99.6 3.2E-17 1.1E-21 189.9 2.9 173 13-244 577-751 (800)
107 1pzn_A RAD51, DNA repair and r 99.6 6.9E-18 2.4E-22 178.5 -3.0 163 42-243 119-307 (349)
108 2i3b_A HCR-ntpase, human cance 99.6 2.9E-18 9.9E-23 166.0 -7.7 158 53-243 1-168 (189)
109 3szr_A Interferon-induced GTP- 99.6 3E-17 1E-21 185.6 -5.6 171 48-251 43-237 (608)
110 2cvh_A DNA repair and recombin 99.6 7.1E-15 2.4E-19 143.5 11.5 154 42-238 8-185 (220)
111 3kta_B Chromosome segregation 99.5 3.5E-14 1.2E-18 135.3 13.0 93 155-251 59-158 (173)
112 3jvv_A Twitching mobility prot 99.5 1.2E-15 4.2E-20 161.5 3.1 128 49-238 119-246 (356)
113 2qag_C Septin-7; cell cycle, c 99.5 6E-16 2.1E-20 167.0 -1.8 151 36-220 20-176 (418)
114 1zp6_A Hypothetical protein AT 99.5 1.9E-17 6.5E-22 158.7 -12.5 141 49-207 5-148 (191)
115 2bbw_A Adenylate kinase 4, AK4 99.5 4.7E-17 1.6E-21 163.2 -10.2 147 52-209 26-199 (246)
116 1pui_A ENGB, probable GTP-bind 99.5 6.7E-17 2.3E-21 156.8 -8.9 159 41-209 16-199 (210)
117 1s96_A Guanylate kinase, GMP k 99.5 5.2E-16 1.8E-20 153.5 -3.5 151 46-255 9-164 (219)
118 2bdt_A BH3686; alpha-beta prot 99.5 1.7E-18 5.8E-23 166.3 -22.1 173 53-249 2-182 (189)
119 2rcn_A Probable GTPase ENGC; Y 99.5 3.4E-14 1.1E-18 150.0 5.8 123 42-175 205-328 (358)
120 2qag_B Septin-6, protein NEDD5 99.4 5E-15 1.7E-19 159.5 -0.9 165 38-219 26-217 (427)
121 1lw7_A Transcriptional regulat 99.4 1.1E-17 3.6E-22 178.0 -22.1 169 42-235 157-341 (365)
122 1n0w_A DNA repair protein RAD5 99.4 8.5E-13 2.9E-17 130.7 13.7 153 48-239 19-210 (243)
123 2gza_A Type IV secretion syste 99.4 1.3E-14 4.5E-19 154.0 0.4 137 43-239 165-303 (361)
124 2ewv_A Twitching motility prot 99.4 1.6E-14 5.3E-19 154.0 0.5 132 41-237 126-258 (372)
125 1nij_A Hypothetical protein YJ 99.4 3E-17 1E-21 171.4 -20.2 163 53-230 4-197 (318)
126 1udx_A The GTP-binding protein 99.4 7E-15 2.4E-19 158.6 -4.9 169 43-232 147-319 (416)
127 2yhs_A FTSY, cell division pro 99.4 9.8E-15 3.3E-19 159.3 -5.2 155 43-220 283-448 (503)
128 1htw_A HI0065; nucleotide-bind 99.4 1.1E-14 3.9E-19 136.6 -4.2 79 39-122 19-97 (158)
129 3e70_C DPA, signal recognition 99.3 5.8E-14 2E-18 147.0 -1.2 145 50-221 126-279 (328)
130 3auy_A DNA double-strand break 99.3 3.5E-12 1.2E-16 135.7 12.1 78 156-237 276-360 (371)
131 2qm8_A GTPase/ATPase; G protei 99.3 1.5E-15 5E-20 159.9 -14.0 163 39-208 41-260 (337)
132 2yv5_A YJEQ protein; hydrolase 99.3 4.5E-14 1.5E-18 146.3 -3.0 121 50-173 162-300 (302)
133 3ec2_A DNA replication protein 99.3 4.3E-13 1.5E-17 127.5 3.7 114 47-224 32-146 (180)
134 2f1r_A Molybdopterin-guanine d 99.3 5.8E-15 2E-19 140.5 -9.5 136 54-211 3-164 (171)
135 2kjq_A DNAA-related protein; s 99.3 1.6E-12 5.5E-17 120.6 5.5 98 41-225 29-129 (149)
136 3lda_A DNA repair protein RAD5 99.3 2.1E-11 7.2E-16 130.8 12.5 63 177-239 272-364 (400)
137 1w1w_A Structural maintenance 99.3 9.5E-12 3.2E-16 134.9 9.9 77 158-237 331-411 (430)
138 1odf_A YGR205W, hypothetical 3 99.2 2.6E-13 9E-18 139.7 -3.3 129 51-195 29-169 (290)
139 1sxj_E Activator 1 40 kDa subu 99.2 8.1E-12 2.8E-16 131.0 7.2 144 56-231 39-184 (354)
140 1p9r_A General secretion pathw 99.2 4.6E-14 1.6E-18 152.3 -11.2 137 40-184 156-315 (418)
141 1in4_A RUVB, holliday junction 99.2 3.4E-14 1.2E-18 149.1 -12.8 154 39-211 30-197 (334)
142 1u0l_A Probable GTPase ENGC; p 99.1 1E-12 3.6E-17 135.9 -4.0 107 49-163 165-294 (301)
143 2oap_1 GSPE-2, type II secreti 99.1 5.4E-14 1.8E-18 155.6 -16.1 173 40-229 247-457 (511)
144 3c8u_A Fructokinase; YP_612366 99.1 3.3E-13 1.1E-17 131.7 -10.0 115 50-188 19-140 (208)
145 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 5.7E-14 2E-18 150.2 -17.2 170 49-248 16-210 (392)
146 1t9h_A YLOQ, probable GTPase E 99.1 4.5E-12 1.6E-16 131.3 -2.6 119 48-168 168-303 (307)
147 1lvg_A Guanylate kinase, GMP k 99.1 3.4E-14 1.2E-18 138.0 -17.9 57 171-237 116-173 (198)
148 2x8a_A Nuclear valosin-contain 99.1 1.4E-14 4.7E-19 148.1 -22.2 143 39-203 32-190 (274)
149 2r6a_A DNAB helicase, replicat 99.0 3.1E-11 1.1E-15 131.9 1.3 181 41-240 191-401 (454)
150 2dr3_A UPF0273 protein PH0284; 99.0 4.2E-11 1.4E-15 118.6 0.2 61 177-237 127-196 (247)
151 1sq5_A Pantothenate kinase; P- 99.0 3.7E-12 1.3E-16 132.2 -8.2 128 41-193 49-199 (308)
152 1vma_A Cell division protein F 98.9 3.1E-10 1.1E-14 117.6 4.4 115 45-208 96-213 (306)
153 2zr9_A Protein RECA, recombina 98.9 1E-09 3.6E-14 115.7 7.1 149 48-245 56-237 (349)
154 1ls1_A Signal recognition part 98.9 3.5E-09 1.2E-13 109.1 10.1 118 44-206 91-209 (295)
155 2ius_A DNA translocase FTSK; n 98.8 1.1E-10 3.9E-15 128.4 -4.0 167 45-224 159-345 (512)
156 3euj_A Chromosome partition pr 98.8 8.3E-10 2.8E-14 120.7 1.4 52 40-93 17-68 (483)
157 2px0_A Flagellar biosynthesis 98.8 6.2E-09 2.1E-13 107.3 7.4 142 51-243 103-247 (296)
158 3k1j_A LON protease, ATP-depen 98.8 6.1E-11 2.1E-15 134.1 -8.6 161 38-205 45-227 (604)
159 1oix_A RAS-related protein RAB 98.7 4.1E-10 1.4E-14 107.8 -3.0 38 167-206 152-189 (191)
160 3tr0_A Guanylate kinase, GMP k 98.7 3.8E-10 1.3E-14 108.7 -3.3 68 47-119 1-71 (205)
161 1iy2_A ATP-dependent metallopr 98.7 2.5E-12 8.4E-17 131.1 -20.2 124 40-181 62-190 (278)
162 1ixz_A ATP-dependent metallopr 98.7 4.2E-12 1.4E-16 127.3 -19.8 128 40-187 38-170 (254)
163 3hr8_A Protein RECA; alpha and 98.5 2.8E-08 9.6E-13 104.8 4.0 30 48-77 56-85 (356)
164 3lnc_A Guanylate kinase, GMP k 98.5 2.7E-08 9.4E-13 98.1 1.5 39 40-78 14-53 (231)
165 1svm_A Large T antigen; AAA+ f 98.5 1.5E-10 5E-15 123.3 -16.4 139 40-189 156-312 (377)
166 4a1f_A DNAB helicase, replicat 98.4 1.4E-07 4.8E-12 98.8 5.7 128 41-217 34-162 (338)
167 1qhl_A Protein (cell division 98.4 6.4E-09 2.2E-13 103.0 -4.4 59 47-107 22-91 (227)
168 2f9l_A RAB11B, member RAS onco 98.4 3.5E-08 1.2E-12 94.6 0.7 37 169-207 130-166 (199)
169 2ce7_A Cell division protein F 98.4 2.5E-07 8.6E-12 101.2 7.0 112 42-221 40-164 (476)
170 2qtf_A Protein HFLX, GTP-bindi 98.4 4.2E-07 1.4E-11 96.3 7.7 148 51-209 176-354 (364)
171 3bh0_A DNAB-like replicative h 98.4 4.8E-07 1.6E-11 93.8 7.8 35 41-75 56-90 (315)
172 4eun_A Thermoresistant glucoki 98.3 1.1E-08 3.9E-13 98.7 -4.8 46 43-93 19-64 (200)
173 2xau_A PRE-mRNA-splicing facto 98.2 1.2E-06 4E-11 101.7 6.5 76 156-232 186-262 (773)
174 3kta_A Chromosome segregation 98.1 6.5E-07 2.2E-11 84.4 2.6 34 44-78 18-51 (182)
175 2j41_A Guanylate kinase; GMP, 98.1 7.5E-07 2.6E-11 85.4 2.7 31 48-78 1-31 (207)
176 1zu4_A FTSY; GTPase, signal re 98.1 4.1E-07 1.4E-11 94.7 0.0 78 43-121 95-185 (320)
177 1v5w_A DMC1, meiotic recombina 98.1 1.4E-05 4.8E-10 83.8 11.8 139 48-220 117-273 (343)
178 1jjv_A Dephospho-COA kinase; P 98.1 4.1E-07 1.4E-11 87.7 -0.0 127 55-236 4-131 (206)
179 3vaa_A Shikimate kinase, SK; s 98.1 1.4E-06 4.7E-11 83.8 3.4 40 38-77 10-49 (199)
180 2dhr_A FTSH; AAA+ protein, hex 98.1 7.3E-09 2.5E-13 114.1 -14.5 130 40-189 53-187 (499)
181 3a00_A Guanylate kinase, GMP k 98.0 7.8E-07 2.7E-11 84.7 0.7 26 53-78 1-26 (186)
182 2e87_A Hypothetical protein PH 98.0 5.6E-06 1.9E-10 87.2 7.2 60 156-218 227-287 (357)
183 2z43_A DNA repair and recombin 98.0 1.7E-05 5.8E-10 82.4 10.8 140 48-220 102-257 (324)
184 4e22_A Cytidylate kinase; P-lo 98.0 2.6E-07 9.1E-12 92.6 -3.3 64 41-108 18-96 (252)
185 1kgd_A CASK, peripheral plasma 98.0 2E-06 6.9E-11 81.4 2.2 37 51-87 3-39 (180)
186 2z4s_A Chromosomal replication 97.9 1.8E-06 6.1E-11 93.7 1.0 70 177-247 193-264 (440)
187 1fnn_A CDC6P, cell division co 97.9 2.5E-05 8.5E-10 82.0 9.6 44 177-221 124-169 (389)
188 2q6t_A DNAB replication FORK h 97.9 4.9E-05 1.7E-09 82.4 11.8 171 41-236 188-396 (444)
189 3nwj_A ATSK2; P loop, shikimat 97.9 7.4E-07 2.5E-11 89.5 -2.6 40 38-77 30-72 (250)
190 3uie_A Adenylyl-sulfate kinase 97.8 2E-06 7E-11 82.7 -0.2 50 41-92 13-64 (200)
191 2vp4_A Deoxynucleoside kinase; 97.8 3.9E-06 1.3E-10 82.7 1.8 41 47-92 14-54 (230)
192 3t34_A Dynamin-related protein 97.8 5E-05 1.7E-09 79.9 10.2 58 161-219 155-212 (360)
193 3b9p_A CG5977-PA, isoform A; A 97.8 8.2E-05 2.8E-09 75.5 11.1 27 51-77 52-78 (297)
194 1ega_A Protein (GTP-binding pr 97.8 3E-06 1E-10 87.2 -0.5 44 161-211 101-147 (301)
195 3tau_A Guanylate kinase, GMP k 97.7 1.4E-05 4.8E-10 77.4 3.5 28 51-78 6-33 (208)
196 1knq_A Gluconate kinase; ALFA/ 97.7 9.1E-06 3.1E-10 76.0 1.4 37 51-92 6-42 (175)
197 1rz3_A Hypothetical protein rb 97.7 6.8E-06 2.3E-10 79.2 0.2 41 50-91 19-59 (201)
198 3ney_A 55 kDa erythrocyte memb 97.6 1.6E-05 5.6E-10 76.7 2.3 29 50-78 16-44 (197)
199 2qt1_A Nicotinamide riboside k 97.6 2.8E-05 9.7E-10 74.8 3.5 29 49-77 17-45 (207)
200 3cf0_A Transitional endoplasmi 97.6 7.7E-05 2.7E-09 76.4 6.9 30 49-78 45-74 (301)
201 2dy1_A Elongation factor G; tr 97.6 1.5E-05 5.1E-10 90.9 1.4 45 47-92 3-48 (665)
202 2i1q_A DNA repair and recombin 97.5 0.00036 1.2E-08 72.0 11.0 164 48-237 93-290 (322)
203 3cr8_A Sulfate adenylyltranfer 97.5 1.7E-05 5.8E-10 88.3 0.9 43 49-92 365-409 (552)
204 1u94_A RECA protein, recombina 97.5 0.00016 5.5E-09 76.1 8.0 29 48-76 58-86 (356)
205 3kl4_A SRP54, signal recogniti 97.5 0.0002 6.7E-09 77.3 8.7 112 52-206 96-210 (433)
206 1kag_A SKI, shikimate kinase I 97.5 3.6E-05 1.2E-09 71.5 2.5 27 52-78 3-29 (173)
207 3bgw_A DNAB-like replicative h 97.5 0.00038 1.3E-08 75.5 10.5 34 42-75 186-219 (444)
208 3tqc_A Pantothenate kinase; bi 97.5 8E-06 2.7E-10 84.9 -2.6 40 39-78 72-117 (321)
209 1lv7_A FTSH; alpha/beta domain 97.4 0.00037 1.3E-08 69.2 9.1 35 42-78 36-70 (257)
210 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 7.9E-05 2.7E-09 68.5 3.5 29 45-74 16-44 (149)
211 2qby_A CDC6 homolog 1, cell di 97.4 2.7E-05 9.2E-10 81.3 -0.0 27 51-77 43-69 (386)
212 2wjg_A FEOB, ferrous iron tran 97.3 4.1E-05 1.4E-09 71.6 0.9 22 55-76 9-30 (188)
213 1ypw_A Transitional endoplasmi 97.3 9.5E-05 3.3E-09 86.1 4.0 30 49-78 234-263 (806)
214 2w58_A DNAI, primosome compone 97.3 0.0001 3.4E-09 70.4 3.4 24 54-77 55-78 (202)
215 1q57_A DNA primase/helicase; d 97.3 0.0034 1.2E-07 68.9 15.6 171 42-237 231-441 (503)
216 1w1w_A Structural maintenance 97.3 0.00011 3.8E-09 79.2 3.3 31 48-78 21-51 (430)
217 1l8q_A Chromosomal replication 97.2 0.00023 8E-09 73.3 5.2 47 176-223 96-143 (324)
218 2p67_A LAO/AO transport system 97.2 1.9E-05 6.3E-10 82.8 -3.4 51 39-90 42-92 (341)
219 4eaq_A DTMP kinase, thymidylat 97.2 0.00013 4.5E-09 71.9 2.5 37 42-78 12-51 (229)
220 3m6a_A ATP-dependent protease 97.2 4.8E-05 1.7E-09 84.6 -0.7 49 40-90 96-144 (543)
221 2www_A Methylmalonic aciduria 97.1 9.7E-05 3.3E-09 77.6 0.9 41 51-92 72-112 (349)
222 2gj8_A MNME, tRNA modification 97.1 0.00049 1.7E-08 63.9 5.4 27 51-77 2-28 (172)
223 3bos_A Putative DNA replicatio 97.1 0.0005 1.7E-08 66.6 5.7 26 52-77 51-76 (242)
224 3h4m_A Proteasome-activating n 97.1 0.00057 1.9E-08 68.7 6.1 29 50-78 48-76 (285)
225 1mky_A Probable GTP-binding pr 97.1 0.00043 1.5E-08 74.8 5.6 38 55-92 182-230 (439)
226 1m2o_B GTP-binding protein SAR 97.0 0.00051 1.8E-08 64.8 4.9 35 41-76 12-46 (190)
227 3llm_A ATP-dependent RNA helic 97.0 7.6E-05 2.6E-09 73.5 -0.9 67 162-231 162-229 (235)
228 2pez_A Bifunctional 3'-phospho 97.0 0.00034 1.2E-08 65.5 3.5 38 51-90 3-42 (179)
229 1cke_A CK, MSSA, protein (cyti 97.0 0.00035 1.2E-08 67.8 3.5 56 52-107 4-73 (227)
230 3qks_A DNA double-strand break 97.0 0.00036 1.2E-08 67.3 3.5 29 45-74 16-44 (203)
231 3lxx_A GTPase IMAP family memb 97.0 0.0042 1.4E-07 60.8 11.2 24 55-78 31-54 (239)
232 1y63_A LMAJ004144AAA protein; 96.9 0.00039 1.3E-08 65.6 3.0 32 45-76 2-33 (184)
233 1m7g_A Adenylylsulfate kinase; 96.9 0.0002 6.9E-09 69.1 0.9 41 49-90 21-63 (211)
234 1xp8_A RECA protein, recombina 96.9 0.0066 2.3E-07 64.0 12.4 27 49-75 70-96 (366)
235 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0037 1.3E-07 61.6 9.9 27 51-77 37-63 (262)
236 2qor_A Guanylate kinase; phosp 96.8 0.0005 1.7E-08 65.9 3.1 29 50-78 9-37 (204)
237 2b8t_A Thymidine kinase; deoxy 96.8 0.0013 4.6E-08 64.5 6.1 53 178-236 89-150 (223)
238 2qag_A Septin-2, protein NEDD5 96.8 5.7E-05 1.9E-09 79.7 -4.2 45 38-89 28-72 (361)
239 2zts_A Putative uncharacterize 96.8 0.00087 3E-08 65.5 4.6 61 176-236 133-206 (251)
240 1f6b_A SAR1; gtpases, N-termin 96.8 0.00022 7.7E-09 67.9 0.2 35 41-76 14-48 (198)
241 2if2_A Dephospho-COA kinase; a 96.7 0.00071 2.4E-08 64.5 3.0 21 55-75 3-23 (204)
242 2wji_A Ferrous iron transport 96.6 0.0022 7.5E-08 58.8 5.8 23 55-77 5-27 (165)
243 3d8b_A Fidgetin-like protein 1 96.6 0.0077 2.6E-07 63.0 10.5 27 51-77 115-141 (357)
244 3cm0_A Adenylate kinase; ATP-b 96.5 0.0012 4.1E-08 61.8 3.4 26 51-76 2-27 (186)
245 2yvu_A Probable adenylyl-sulfa 96.5 0.0012 4.2E-08 62.0 3.4 29 50-78 10-38 (186)
246 2ffh_A Protein (FFH); SRP54, s 96.5 0.00052 1.8E-08 73.9 0.7 46 44-92 91-136 (425)
247 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0052 1.8E-07 63.5 8.1 28 48-75 118-145 (331)
248 3auy_A DNA double-strand break 96.5 0.0016 5.3E-08 68.8 4.2 31 43-74 16-46 (371)
249 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00025 8.5E-09 74.4 -2.1 37 41-77 10-48 (359)
250 1np6_A Molybdopterin-guanine d 96.4 0.0018 6.1E-08 61.1 4.0 39 53-91 6-46 (174)
251 3cmw_A Protein RECA, recombina 96.4 0.0045 1.5E-07 76.6 8.4 28 49-76 728-755 (1706)
252 2v1u_A Cell division control p 96.4 0.002 6.9E-08 67.0 4.7 27 51-77 42-68 (387)
253 2ohf_A Protein OLA1, GTP-bindi 96.4 0.0013 4.4E-08 70.0 3.1 44 47-90 16-69 (396)
254 3t61_A Gluconokinase; PSI-biol 96.4 0.0013 4.3E-08 62.8 2.8 25 53-77 18-42 (202)
255 3io5_A Recombination and repai 96.4 0.014 4.8E-07 60.2 10.5 57 164-220 93-171 (333)
256 1sxj_C Activator 1 40 kDa subu 96.4 0.00029 1E-08 73.2 -2.2 40 39-78 30-71 (340)
257 3kb2_A SPBC2 prophage-derived 96.3 0.0019 6.6E-08 59.3 3.4 23 55-77 3-25 (173)
258 1qhx_A CPT, protein (chloramph 96.3 0.0022 7.5E-08 59.5 3.6 26 53-78 3-28 (178)
259 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.036 1.2E-06 57.1 13.2 28 50-77 42-69 (322)
260 3n70_A Transport activator; si 96.3 0.0094 3.2E-07 53.8 7.7 44 178-224 76-119 (145)
261 2p5t_B PEZT; postsegregational 96.3 0.0016 5.6E-08 64.7 2.7 45 42-90 22-66 (253)
262 1j8m_F SRP54, signal recogniti 96.2 0.00038 1.3E-08 71.4 -2.1 46 44-91 89-135 (297)
263 3ice_A Transcription terminati 96.2 0.0011 3.7E-08 70.1 1.2 33 45-77 166-198 (422)
264 1q3t_A Cytidylate kinase; nucl 96.2 0.0022 7.6E-08 62.9 3.4 29 49-77 12-40 (236)
265 2rhm_A Putative kinase; P-loop 96.1 0.0024 8.3E-08 59.9 3.0 27 51-77 3-29 (193)
266 1kht_A Adenylate kinase; phosp 96.1 0.0029 9.9E-08 59.1 3.5 25 53-77 3-27 (192)
267 3hu3_A Transitional endoplasmi 96.1 0.0055 1.9E-07 67.1 6.2 28 50-77 235-262 (489)
268 3cmw_A Protein RECA, recombina 96.1 0.059 2E-06 66.9 15.4 34 42-75 370-405 (1706)
269 2zej_A Dardarin, leucine-rich 96.0 0.0027 9.3E-08 59.3 2.9 23 55-77 4-26 (184)
270 3cmu_A Protein RECA, recombina 96.0 0.012 4.2E-07 73.7 9.1 76 169-244 450-558 (2050)
271 3lw7_A Adenylate kinase relate 96.0 0.0034 1.2E-07 57.3 3.2 19 55-73 3-21 (179)
272 3r20_A Cytidylate kinase; stru 95.9 0.0036 1.2E-07 61.8 3.4 25 53-77 9-33 (233)
273 2ze6_A Isopentenyl transferase 95.9 0.0036 1.2E-07 62.4 3.3 24 54-77 2-25 (253)
274 3trf_A Shikimate kinase, SK; a 95.9 0.0042 1.4E-07 58.0 3.5 26 52-77 4-29 (185)
275 2plr_A DTMP kinase, probable t 95.9 0.0047 1.6E-07 58.7 3.7 27 52-78 3-29 (213)
276 3iij_A Coilin-interacting nucl 95.9 0.0038 1.3E-07 58.2 3.0 26 51-76 9-34 (180)
277 1ly1_A Polynucleotide kinase; 95.8 0.0049 1.7E-07 56.9 3.5 22 54-75 3-24 (181)
278 2v54_A DTMP kinase, thymidylat 95.8 0.005 1.7E-07 58.3 3.6 27 51-77 2-28 (204)
279 1vht_A Dephospho-COA kinase; s 95.8 0.0051 1.7E-07 59.2 3.7 24 52-75 3-26 (218)
280 2jaq_A Deoxyguanosine kinase; 95.8 0.0048 1.6E-07 58.2 3.4 24 55-78 2-25 (205)
281 2wwf_A Thymidilate kinase, put 95.7 0.0054 1.9E-07 58.4 3.5 26 51-76 8-33 (212)
282 2c95_A Adenylate kinase 1; tra 95.7 0.0051 1.8E-07 57.7 3.2 27 51-77 7-33 (196)
283 1via_A Shikimate kinase; struc 95.7 0.0053 1.8E-07 57.0 3.1 23 55-77 6-28 (175)
284 3ihw_A Centg3; RAS, centaurin, 95.6 0.011 3.7E-07 55.3 5.2 22 55-76 22-43 (184)
285 1tev_A UMP-CMP kinase; ploop, 95.6 0.0065 2.2E-07 56.8 3.6 25 52-76 2-26 (196)
286 1gvn_B Zeta; postsegregational 95.6 0.0055 1.9E-07 62.3 3.3 36 51-89 31-66 (287)
287 1nn5_A Similar to deoxythymidy 95.6 0.0062 2.1E-07 58.1 3.4 27 50-76 6-32 (215)
288 1ex7_A Guanylate kinase; subst 95.6 0.006 2.1E-07 58.1 3.1 24 55-78 3-26 (186)
289 1uf9_A TT1252 protein; P-loop, 95.5 0.0067 2.3E-07 57.3 3.4 24 53-76 8-31 (203)
290 1nks_A Adenylate kinase; therm 95.5 0.0063 2.2E-07 56.7 3.2 23 55-77 3-25 (194)
291 1gtv_A TMK, thymidylate kinase 95.5 0.0036 1.2E-07 59.8 1.4 24 55-78 2-25 (214)
292 1xx6_A Thymidine kinase; NESG, 95.5 0.018 6.2E-07 55.0 6.3 53 178-236 81-142 (191)
293 1aky_A Adenylate kinase; ATP:A 95.5 0.0079 2.7E-07 58.0 3.6 27 51-77 2-28 (220)
294 2bwj_A Adenylate kinase 5; pho 95.4 0.0065 2.2E-07 57.2 2.7 28 50-77 9-36 (199)
295 3k53_A Ferrous iron transport 95.3 0.0071 2.4E-07 60.6 3.0 23 55-77 5-27 (271)
296 1zd8_A GTP:AMP phosphotransfer 95.2 0.0091 3.1E-07 58.0 3.3 27 51-77 5-31 (227)
297 2vli_A Antibiotic resistance p 95.2 0.0069 2.4E-07 56.2 2.3 26 52-77 4-29 (183)
298 1z2a_A RAS-related protein RAB 95.2 0.0086 3E-07 54.0 2.9 23 55-77 7-29 (168)
299 3vfd_A Spastin; ATPase, microt 95.2 0.074 2.5E-06 56.0 10.6 27 52-78 147-173 (389)
300 2erx_A GTP-binding protein DI- 95.2 0.01 3.4E-07 53.7 3.2 22 55-76 5-26 (172)
301 2nzj_A GTP-binding protein REM 95.2 0.01 3.5E-07 54.0 3.2 23 55-77 6-28 (175)
302 2z0h_A DTMP kinase, thymidylat 95.2 0.01 3.5E-07 55.7 3.3 23 55-77 2-24 (197)
303 1xjc_A MOBB protein homolog; s 95.2 0.01 3.5E-07 55.6 3.2 24 54-77 5-28 (169)
304 2cdn_A Adenylate kinase; phosp 95.2 0.012 3.9E-07 55.9 3.7 26 52-77 19-44 (201)
305 2ged_A SR-beta, signal recogni 95.1 0.0093 3.2E-07 55.6 2.9 24 54-77 49-72 (193)
306 1kao_A RAP2A; GTP-binding prot 95.1 0.0098 3.3E-07 53.4 2.9 22 55-76 5-26 (167)
307 3q72_A GTP-binding protein RAD 95.1 0.0084 2.9E-07 54.2 2.4 22 56-77 5-26 (166)
308 3fb4_A Adenylate kinase; psych 95.1 0.011 3.7E-07 56.6 3.3 22 55-76 2-23 (216)
309 2dyk_A GTP-binding protein; GT 95.1 0.01 3.5E-07 53.2 2.9 23 55-77 3-25 (161)
310 1u8z_A RAS-related protein RAL 95.1 0.01 3.5E-07 53.3 2.9 23 55-77 6-28 (168)
311 3q85_A GTP-binding protein REM 95.0 0.011 3.9E-07 53.5 3.2 22 56-77 5-26 (169)
312 1zuh_A Shikimate kinase; alpha 95.0 0.012 4.2E-07 54.0 3.4 24 54-77 8-31 (168)
313 2ce2_X GTPase HRAS; signaling 95.0 0.0097 3.3E-07 53.3 2.7 22 56-77 6-27 (166)
314 3ake_A Cytidylate kinase; CMP 95.0 0.011 3.8E-07 56.0 3.1 23 55-77 4-26 (208)
315 4ag6_A VIRB4 ATPase, type IV s 95.0 0.0066 2.3E-07 64.2 1.7 35 52-87 34-68 (392)
316 2j9r_A Thymidine kinase; TK1, 95.0 0.035 1.2E-06 53.9 6.7 53 178-236 101-162 (214)
317 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.013 4.4E-07 58.4 3.7 26 51-76 2-27 (260)
318 1z0j_A RAB-22, RAS-related pro 95.0 0.011 3.7E-07 53.4 2.9 23 55-77 8-30 (170)
319 2pbr_A DTMP kinase, thymidylat 95.0 0.012 4.2E-07 54.9 3.3 23 55-77 2-24 (195)
320 1jal_A YCHF protein; nucleotid 95.0 0.017 5.7E-07 60.8 4.7 37 53-89 2-48 (363)
321 1z08_A RAS-related protein RAB 95.0 0.011 3.9E-07 53.4 2.9 22 55-76 8-29 (170)
322 1ek0_A Protein (GTP-binding pr 95.0 0.011 3.9E-07 53.2 2.9 22 56-77 6-27 (170)
323 3dl0_A Adenylate kinase; phosp 95.0 0.013 4.3E-07 56.3 3.3 23 55-77 2-24 (216)
324 3tw8_B RAS-related protein RAB 94.9 0.011 3.7E-07 54.1 2.7 23 55-77 11-33 (181)
325 1g16_A RAS-related protein SEC 94.9 0.011 3.7E-07 53.5 2.7 22 56-77 6-27 (170)
326 1wms_A RAB-9, RAB9, RAS-relate 94.9 0.012 4E-07 53.8 2.9 22 56-77 10-31 (177)
327 1e6c_A Shikimate kinase; phosp 94.9 0.011 3.9E-07 54.2 2.8 23 55-77 4-26 (173)
328 1c1y_A RAS-related protein RAP 94.9 0.012 4E-07 53.0 2.9 21 56-76 6-26 (167)
329 3cmu_A Protein RECA, recombina 94.9 0.033 1.1E-06 70.0 7.7 35 43-77 720-756 (2050)
330 1ukz_A Uridylate kinase; trans 94.9 0.014 4.8E-07 55.3 3.5 25 53-77 15-39 (203)
331 3umf_A Adenylate kinase; rossm 94.9 0.014 4.9E-07 56.9 3.5 29 49-77 25-53 (217)
332 1ky3_A GTP-binding protein YPT 94.9 0.012 4.3E-07 53.7 2.9 23 55-77 10-32 (182)
333 1zak_A Adenylate kinase; ATP:A 94.9 0.012 3.9E-07 56.9 2.8 26 52-77 4-29 (222)
334 1svi_A GTP-binding protein YSX 94.9 0.012 3.9E-07 55.0 2.7 23 55-77 25-47 (195)
335 2pt5_A Shikimate kinase, SK; a 94.9 0.015 5.1E-07 53.2 3.4 23 55-77 2-24 (168)
336 1qf9_A UMP/CMP kinase, protein 94.8 0.014 4.9E-07 54.2 3.4 24 53-76 6-29 (194)
337 3lxw_A GTPase IMAP family memb 94.8 0.013 4.5E-07 57.9 3.2 24 55-78 23-46 (247)
338 2lkc_A Translation initiation 94.8 0.017 5.7E-07 52.8 3.7 26 52-77 7-32 (178)
339 2iyv_A Shikimate kinase, SK; t 94.8 0.012 4E-07 54.9 2.7 24 54-77 3-26 (184)
340 2r8r_A Sensor protein; KDPD, P 94.8 0.0076 2.6E-07 59.1 1.4 26 51-76 3-29 (228)
341 2fn4_A P23, RAS-related protei 94.8 0.013 4.3E-07 53.6 2.7 22 55-76 11-32 (181)
342 1fzq_A ADP-ribosylation factor 94.8 0.011 3.9E-07 54.8 2.4 22 55-76 18-39 (181)
343 3b1v_A Ferrous iron uptake tra 94.8 0.014 4.8E-07 58.8 3.2 23 55-77 5-27 (272)
344 1r2q_A RAS-related protein RAB 94.8 0.014 4.7E-07 52.6 2.9 22 55-76 8-29 (170)
345 3tlx_A Adenylate kinase 2; str 94.7 0.017 5.7E-07 57.0 3.6 25 52-76 28-52 (243)
346 3clv_A RAB5 protein, putative; 94.7 0.014 4.8E-07 54.2 2.9 23 55-77 9-31 (208)
347 2hxs_A RAB-26, RAS-related pro 94.7 0.016 5.3E-07 53.0 3.2 21 56-76 9-29 (178)
348 4dsu_A GTPase KRAS, isoform 2B 94.7 0.014 4.9E-07 53.8 2.9 23 55-77 6-28 (189)
349 3pqc_A Probable GTP-binding pr 94.7 0.013 4.5E-07 54.3 2.7 23 55-77 25-47 (195)
350 2cxx_A Probable GTP-binding pr 94.7 0.013 4.6E-07 54.1 2.7 22 56-77 4-25 (190)
351 1jbk_A CLPB protein; beta barr 94.7 0.019 6.3E-07 52.8 3.6 27 51-77 41-67 (195)
352 1upt_A ARL1, ADP-ribosylation 94.7 0.015 5.1E-07 52.7 2.9 22 55-76 9-30 (171)
353 3bc1_A RAS-related protein RAB 94.6 0.015 5.2E-07 53.7 2.9 22 55-76 13-34 (195)
354 2orv_A Thymidine kinase; TP4A 94.6 0.11 3.9E-06 50.9 9.2 53 177-236 89-150 (234)
355 1ko7_A HPR kinase/phosphatase; 94.6 0.03 1E-06 57.6 5.3 36 40-76 132-167 (314)
356 2oil_A CATX-8, RAS-related pro 94.6 0.015 5.3E-07 54.2 2.9 23 55-77 27-49 (193)
357 1r8s_A ADP-ribosylation factor 94.6 0.016 5.5E-07 52.1 2.9 21 56-76 3-23 (164)
358 4fcw_A Chaperone protein CLPB; 94.6 0.018 6.2E-07 58.2 3.5 26 53-78 47-72 (311)
359 3t1o_A Gliding protein MGLA; G 94.5 0.019 6.3E-07 53.3 3.3 23 56-78 17-39 (198)
360 1z0f_A RAB14, member RAS oncog 94.5 0.017 5.7E-07 52.7 2.9 23 55-77 17-39 (179)
361 2y8e_A RAB-protein 6, GH09086P 94.5 0.016 5.3E-07 52.9 2.7 22 55-76 16-37 (179)
362 2g6b_A RAS-related protein RAB 94.5 0.017 5.9E-07 52.8 2.9 23 55-77 12-34 (180)
363 3be4_A Adenylate kinase; malar 94.5 0.018 6.2E-07 55.5 3.2 26 52-77 4-29 (217)
364 2a9k_A RAS-related protein RAL 94.5 0.017 5.9E-07 53.0 2.9 23 55-77 20-42 (187)
365 1moz_A ARL1, ADP-ribosylation 94.5 0.011 3.7E-07 54.5 1.4 22 54-75 19-40 (183)
366 2efe_B Small GTP-binding prote 94.5 0.018 6.2E-07 52.7 2.9 23 55-77 14-36 (181)
367 1wf3_A GTP-binding protein; GT 94.4 0.02 6.7E-07 58.6 3.4 26 51-77 6-31 (301)
368 2xb4_A Adenylate kinase; ATP-b 94.4 0.021 7.1E-07 55.4 3.4 22 55-76 2-23 (223)
369 3con_A GTPase NRAS; structural 94.4 0.019 6.4E-07 53.4 2.9 23 55-77 23-45 (190)
370 3sr0_A Adenylate kinase; phosp 94.4 0.021 7.2E-07 55.1 3.3 23 55-77 2-24 (206)
371 2grj_A Dephospho-COA kinase; T 94.4 0.022 7.4E-07 54.4 3.3 24 53-76 12-35 (192)
372 1uj2_A Uridine-cytidine kinase 94.3 0.021 7.2E-07 56.4 3.3 24 54-77 23-46 (252)
373 2bme_A RAB4A, RAS-related prot 94.3 0.018 6.2E-07 53.1 2.7 23 55-77 12-34 (186)
374 3iev_A GTP-binding protein ERA 94.3 0.022 7.5E-07 58.3 3.5 23 55-77 12-34 (308)
375 1nrj_B SR-beta, signal recogni 94.3 0.019 6.6E-07 54.7 2.9 23 55-77 14-36 (218)
376 1vg8_A RAS-related protein RAB 94.3 0.02 6.8E-07 53.9 2.9 23 55-77 10-32 (207)
377 2qmh_A HPR kinase/phosphorylas 94.3 0.037 1.3E-06 53.3 4.7 36 41-77 23-58 (205)
378 2bov_A RAla, RAS-related prote 94.3 0.02 6.9E-07 53.7 2.9 22 55-76 16-37 (206)
379 3iby_A Ferrous iron transport 94.3 0.02 6.8E-07 57.1 2.9 23 55-77 3-25 (256)
380 1ksh_A ARF-like protein 2; sma 94.3 0.02 7E-07 52.9 2.8 26 52-77 17-42 (186)
381 2gf9_A RAS-related protein RAB 94.2 0.021 7.1E-07 53.1 2.9 23 55-77 24-46 (189)
382 3t5d_A Septin-7; GTP-binding p 94.2 0.018 6.1E-07 57.8 2.5 22 56-77 11-32 (274)
383 3tkl_A RAS-related protein RAB 94.2 0.021 7.2E-07 53.1 2.9 22 56-77 19-40 (196)
384 2gf0_A GTP-binding protein DI- 94.2 0.02 6.8E-07 53.4 2.7 22 55-76 10-31 (199)
385 1e4v_A Adenylate kinase; trans 94.2 0.023 7.8E-07 54.5 3.1 22 55-76 2-23 (214)
386 3kkq_A RAS-related protein M-R 94.2 0.022 7.5E-07 52.4 2.9 22 55-76 20-41 (183)
387 1m7b_A RND3/RHOE small GTP-bin 94.2 0.02 7E-07 53.0 2.7 22 55-76 9-30 (184)
388 2fg5_A RAB-22B, RAS-related pr 94.2 0.021 7.1E-07 53.4 2.7 23 55-77 25-47 (192)
389 2xtp_A GTPase IMAP family memb 94.2 0.022 7.5E-07 56.3 3.0 23 55-77 24-46 (260)
390 1zbd_A Rabphilin-3A; G protein 94.1 0.024 8.3E-07 53.2 3.2 23 55-77 10-32 (203)
391 1mh1_A RAC1; GTP-binding, GTPa 94.1 0.023 7.7E-07 52.2 2.9 22 55-76 7-28 (186)
392 2p65_A Hypothetical protein PF 94.1 0.024 8.1E-07 52.0 3.0 27 51-77 41-67 (187)
393 1ak2_A Adenylate kinase isoenz 94.1 0.028 9.4E-07 54.8 3.6 26 52-77 15-40 (233)
394 3a8t_A Adenylate isopentenyltr 94.1 0.04 1.4E-06 57.2 5.0 28 51-78 38-65 (339)
395 1jwy_B Dynamin A GTPase domain 94.1 0.023 7.8E-07 57.8 3.1 23 55-77 26-48 (315)
396 3cbq_A GTP-binding protein REM 94.1 0.018 6.2E-07 54.3 2.1 22 55-76 25-46 (195)
397 1z06_A RAS-related protein RAB 94.1 0.024 8.3E-07 52.7 2.9 22 55-76 22-43 (189)
398 2dby_A GTP-binding protein; GD 94.1 0.022 7.6E-07 60.0 2.9 21 56-76 4-24 (368)
399 3oes_A GTPase rhebl1; small GT 94.0 0.022 7.7E-07 53.6 2.7 23 55-77 26-48 (201)
400 2f6r_A COA synthase, bifunctio 94.0 0.025 8.6E-07 57.1 3.2 23 53-75 75-97 (281)
401 3v9p_A DTMP kinase, thymidylat 94.0 0.024 8E-07 55.7 2.8 29 49-77 21-49 (227)
402 1ltq_A Polynucleotide kinase; 94.0 0.028 9.6E-07 56.7 3.5 23 54-76 3-25 (301)
403 3t5g_A GTP-binding protein RHE 94.0 0.024 8.1E-07 52.1 2.7 22 55-76 8-29 (181)
404 3a1s_A Iron(II) transport prot 94.0 0.027 9.2E-07 56.1 3.2 23 55-77 7-29 (258)
405 1zj6_A ADP-ribosylation factor 94.0 0.026 9E-07 52.3 2.9 22 55-76 18-39 (187)
406 4dhe_A Probable GTP-binding pr 94.0 0.016 5.4E-07 55.4 1.4 23 55-77 31-53 (223)
407 3dz8_A RAS-related protein RAB 94.0 0.024 8.2E-07 52.9 2.7 23 55-77 25-47 (191)
408 2il1_A RAB12; G-protein, GDP, 93.9 0.024 8.1E-07 53.1 2.6 23 55-77 28-50 (192)
409 2a5j_A RAS-related protein RAB 93.9 0.026 8.8E-07 52.6 2.9 23 55-77 23-45 (191)
410 3bwd_D RAC-like GTP-binding pr 93.9 0.026 9E-07 51.7 2.9 22 55-76 10-31 (182)
411 1x3s_A RAS-related protein RAB 93.9 0.026 8.9E-07 52.3 2.9 23 55-77 17-39 (195)
412 2o52_A RAS-related protein RAB 93.9 0.026 9E-07 53.2 2.9 22 55-76 27-48 (200)
413 1zd9_A ADP-ribosylation factor 93.9 0.026 8.9E-07 52.5 2.9 22 55-76 24-45 (188)
414 2bcg_Y Protein YP2, GTP-bindin 93.9 0.024 8.3E-07 53.4 2.7 23 55-77 10-32 (206)
415 2wsm_A Hydrogenase expression/ 93.9 0.026 9E-07 53.9 3.0 23 54-76 31-53 (221)
416 2cjw_A GTP-binding protein GEM 93.9 0.027 9.2E-07 53.0 2.9 22 55-76 8-29 (192)
417 2atv_A RERG, RAS-like estrogen 93.9 0.027 9.4E-07 52.7 2.9 22 55-76 30-51 (196)
418 1qvr_A CLPB protein; coiled co 93.8 0.049 1.7E-06 63.7 5.6 25 54-78 589-613 (854)
419 3i8s_A Ferrous iron transport 93.8 0.027 9.2E-07 56.6 3.0 23 55-77 5-27 (274)
420 3cph_A RAS-related protein SEC 93.8 0.028 9.4E-07 53.1 2.9 24 54-77 21-44 (213)
421 2f7s_A C25KG, RAS-related prot 93.8 0.031 1E-06 53.2 3.2 23 55-77 27-49 (217)
422 3reg_A RHO-like small GTPase; 93.8 0.028 9.6E-07 52.5 2.9 23 55-77 25-47 (194)
423 2h57_A ADP-ribosylation factor 93.8 0.021 7.2E-07 53.1 2.0 23 55-77 23-45 (190)
424 2h17_A ADP-ribosylation factor 93.8 0.025 8.5E-07 52.3 2.5 22 55-76 23-44 (181)
425 2p5s_A RAS and EF-hand domain 93.8 0.028 9.6E-07 52.8 2.9 24 54-77 29-52 (199)
426 4bas_A ADP-ribosylation factor 93.8 0.027 9.3E-07 52.4 2.8 23 55-77 19-41 (199)
427 2iwr_A Centaurin gamma 1; ANK 93.8 0.024 8.3E-07 51.9 2.4 22 55-76 9-30 (178)
428 3zvl_A Bifunctional polynucleo 93.8 0.029 1E-06 60.0 3.3 26 51-76 256-281 (416)
429 4edh_A DTMP kinase, thymidylat 93.7 0.038 1.3E-06 53.6 3.7 27 51-77 4-30 (213)
430 2qu8_A Putative nucleolar GTP- 93.7 0.029 9.8E-07 54.2 2.8 22 55-76 31-52 (228)
431 2aka_B Dynamin-1; fusion prote 93.7 0.027 9.3E-07 56.6 2.7 23 55-77 28-50 (299)
432 1njg_A DNA polymerase III subu 93.7 0.037 1.3E-06 52.6 3.5 43 177-222 125-167 (250)
433 2ew1_A RAS-related protein RAB 93.7 0.028 9.6E-07 53.4 2.7 22 55-76 28-49 (201)
434 2fv8_A H6, RHO-related GTP-bin 93.6 0.029 1E-06 53.1 2.7 23 55-77 27-49 (207)
435 2q3h_A RAS homolog gene family 93.6 0.035 1.2E-06 52.1 3.2 23 54-76 21-43 (201)
436 1a7j_A Phosphoribulokinase; tr 93.6 0.019 6.5E-07 58.4 1.4 25 52-76 4-28 (290)
437 3c5c_A RAS-like protein 12; GD 93.6 0.034 1.2E-06 51.8 2.9 22 55-76 23-44 (187)
438 2j1l_A RHO-related GTP-binding 93.5 0.034 1.2E-06 53.1 3.0 22 55-76 36-57 (214)
439 1gwn_A RHO-related GTP-binding 93.5 0.032 1.1E-06 53.2 2.7 23 55-77 30-52 (205)
440 2fu5_C RAS-related protein RAB 93.5 0.023 7.8E-07 52.3 1.6 22 55-76 10-31 (183)
441 2gco_A H9, RHO-related GTP-bin 93.4 0.033 1.1E-06 52.5 2.7 23 55-77 27-49 (201)
442 3llu_A RAS-related GTP-binding 93.4 0.037 1.3E-06 51.9 2.9 24 55-78 22-45 (196)
443 2b6h_A ADP-ribosylation factor 93.4 0.031 1.1E-06 52.4 2.4 22 55-76 31-52 (192)
444 2fh5_B SR-beta, signal recogni 93.4 0.036 1.2E-06 52.5 2.9 23 55-77 9-31 (214)
445 3lv8_A DTMP kinase, thymidylat 93.3 0.043 1.5E-06 54.1 3.4 26 52-77 26-51 (236)
446 2h92_A Cytidylate kinase; ross 93.2 0.042 1.4E-06 52.6 3.0 25 53-77 3-27 (219)
447 3tmk_A Thymidylate kinase; pho 93.1 0.049 1.7E-06 53.0 3.4 28 51-78 3-30 (216)
448 2atx_A Small GTP binding prote 93.1 0.04 1.4E-06 51.3 2.7 22 55-76 20-41 (194)
449 2orw_A Thymidine kinase; TMTK, 93.1 0.051 1.7E-06 51.3 3.4 53 178-236 76-137 (184)
450 3pxi_A Negative regulator of g 93.1 0.16 5.4E-06 58.5 8.1 23 55-77 523-545 (758)
451 3cnl_A YLQF, putative uncharac 93.1 0.049 1.7E-06 54.5 3.4 25 54-78 100-124 (262)
452 1p5z_B DCK, deoxycytidine kina 93.1 0.034 1.2E-06 55.2 2.2 28 51-78 22-49 (263)
453 3d3q_A TRNA delta(2)-isopenten 93.0 0.048 1.6E-06 56.8 3.3 25 54-78 8-32 (340)
454 4djt_A GTP-binding nuclear pro 93.0 0.023 7.7E-07 54.2 0.8 23 55-77 13-35 (218)
455 3def_A T7I23.11 protein; chlor 93.0 0.045 1.5E-06 54.4 3.0 23 55-77 38-60 (262)
456 2g3y_A GTP-binding protein GEM 93.0 0.05 1.7E-06 52.4 3.2 22 55-76 39-60 (211)
457 2ocp_A DGK, deoxyguanosine kin 93.0 0.054 1.9E-06 52.9 3.5 27 52-78 1-27 (241)
458 1h65_A Chloroplast outer envel 93.0 0.045 1.5E-06 54.6 2.9 23 55-77 41-63 (270)
459 2hup_A RAS-related protein RAB 92.9 0.045 1.5E-06 51.7 2.7 23 55-77 31-53 (201)
460 4tmk_A Protein (thymidylate ki 92.9 0.056 1.9E-06 52.4 3.4 26 52-77 2-27 (213)
461 3gmt_A Adenylate kinase; ssgci 92.9 0.051 1.8E-06 53.4 3.1 24 54-77 9-32 (230)
462 3euj_A Chromosome partition pr 92.9 0.16 5.5E-06 55.3 7.3 71 158-236 377-464 (483)
463 3cpj_B GTP-binding protein YPT 92.8 0.049 1.7E-06 52.2 2.9 23 55-77 15-37 (223)
464 3exa_A TRNA delta(2)-isopenten 92.8 0.063 2.1E-06 55.3 3.7 26 53-78 3-28 (322)
465 3crm_A TRNA delta(2)-isopenten 92.8 0.057 1.9E-06 55.8 3.4 25 54-78 6-30 (323)
466 3ld9_A DTMP kinase, thymidylat 92.7 0.066 2.2E-06 52.3 3.7 27 51-77 19-45 (223)
467 2x77_A ADP-ribosylation factor 92.7 0.032 1.1E-06 51.7 1.4 22 55-76 24-45 (189)
468 2hf9_A Probable hydrogenase ni 92.7 0.051 1.8E-06 52.0 2.9 23 54-76 39-61 (226)
469 3syl_A Protein CBBX; photosynt 92.7 0.059 2E-06 54.3 3.4 27 51-77 65-91 (309)
470 1sky_E F1-ATPase, F1-ATP synth 92.7 0.065 2.2E-06 58.1 3.8 34 42-76 141-174 (473)
471 4gzl_A RAS-related C3 botulinu 92.6 0.05 1.7E-06 51.5 2.7 23 54-76 31-53 (204)
472 2yc2_C IFT27, small RAB-relate 92.6 0.024 8.3E-07 53.1 0.4 22 55-76 22-43 (208)
473 2j0v_A RAC-like GTP-binding pr 92.5 0.054 1.9E-06 51.2 2.7 22 55-76 11-32 (212)
474 3tqf_A HPR(Ser) kinase; transf 92.5 0.13 4.6E-06 48.3 5.2 35 41-76 5-39 (181)
475 2chg_A Replication factor C sm 92.5 0.063 2.2E-06 50.4 3.1 42 177-221 101-142 (226)
476 4dcu_A GTP-binding protein ENG 92.4 0.051 1.7E-06 58.7 2.7 23 55-77 25-47 (456)
477 3q3j_B RHO-related GTP-binding 92.4 0.06 2E-06 51.5 2.9 22 55-76 29-50 (214)
478 1ypw_A Transitional endoplasmi 92.3 0.02 7E-07 66.5 -0.7 32 47-78 505-536 (806)
479 1sxj_D Activator 1 41 kDa subu 92.3 0.06 2.1E-06 55.2 2.9 42 178-222 133-174 (353)
480 2r62_A Cell division protease 92.1 0.034 1.2E-06 55.0 0.6 27 49-77 42-68 (268)
481 3t15_A Ribulose bisphosphate c 92.0 0.073 2.5E-06 53.9 3.0 26 52-77 35-60 (293)
482 3foz_A TRNA delta(2)-isopenten 92.0 0.092 3.1E-06 53.9 3.7 26 53-78 10-35 (316)
483 1d2n_A N-ethylmaleimide-sensit 91.9 0.082 2.8E-06 52.5 3.3 27 51-77 62-88 (272)
484 4a9a_A Ribosome-interacting GT 91.9 0.098 3.3E-06 55.2 4.0 42 51-92 69-121 (376)
485 3uk6_A RUVB-like 2; hexameric 91.9 0.082 2.8E-06 54.7 3.4 28 51-78 68-95 (368)
486 3eie_A Vacuolar protein sortin 91.8 0.085 2.9E-06 54.0 3.4 27 51-77 49-75 (322)
487 1ofh_A ATP-dependent HSL prote 91.7 0.083 2.8E-06 53.0 3.1 25 53-77 50-74 (310)
488 2qgz_A Helicase loader, putati 91.6 0.1 3.4E-06 53.4 3.6 24 53-76 152-175 (308)
489 2x2e_A Dynamin-1; nitration, h 91.6 0.059 2E-06 56.1 1.9 23 55-77 33-55 (353)
490 1puj_A YLQF, conserved hypothe 91.5 0.12 4.1E-06 52.2 4.1 25 54-78 121-145 (282)
491 3p32_A Probable GTPase RV1496/ 91.5 0.1 3.5E-06 54.4 3.6 26 52-77 78-103 (355)
492 1wxq_A GTP-binding protein; st 91.5 0.086 2.9E-06 56.0 3.0 41 140-184 181-221 (397)
493 3eph_A TRNA isopentenyltransfe 91.3 0.11 3.7E-06 55.3 3.5 25 53-77 2-26 (409)
494 3th5_A RAS-related C3 botulinu 90.6 0.038 1.3E-06 52.1 0.0 21 55-75 32-52 (204)
495 1mky_A Probable GTP-binding pr 91.2 0.19 6.4E-06 54.0 5.4 23 55-77 3-25 (439)
496 2hjg_A GTP-binding protein ENG 91.2 0.085 2.9E-06 56.6 2.7 23 55-77 5-27 (436)
497 2qby_B CDC6 homolog 3, cell di 91.1 0.11 3.8E-06 53.9 3.4 26 52-77 44-69 (384)
498 3pvs_A Replication-associated 91.0 0.061 2.1E-06 58.1 1.3 35 44-78 39-75 (447)
499 3gj0_A GTP-binding nuclear pro 91.0 0.076 2.6E-06 50.7 1.9 21 56-76 18-39 (221)
500 3r7w_A Gtpase1, GTP-binding pr 91.0 0.12 4.1E-06 52.7 3.4 23 54-76 4-26 (307)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=9.5e-48 Score=406.78 Aligned_cols=207 Identities=25% Similarity=0.386 Sum_probs=190.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---c---cccCeEEEEcCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---Q---LFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~---~~~~~i~yv~q~~~~~~ 112 (606)
..++|+|||++|++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. . ..|+.+||++|++.+++
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~ 118 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 118 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCT
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCC
Confidence 3579999999999999999999999999999999999998 789999999999853 1 24678999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+||+||+.++.... ..++.+.+++++++|+.+||.+..++++.+|||||||||+|||||+.+|++|+|||||+|||
T Consensus 119 ~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD 195 (366)
T 3tui_C 119 SRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195 (366)
T ss_dssp TSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSC
T ss_pred CCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 999999999987653 34666777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+.++.+++++|++++++.|.|||+++|+. +.+.++||||++|++|++++.|+++++.
T Consensus 196 ~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 196 PATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp HHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999877799999999974 5788999999999999999999998875
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=6e-48 Score=408.02 Aligned_cols=210 Identities=26% Similarity=0.423 Sum_probs=189.6
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeC----Cc-ccccCeEEEEcCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM----SP-QLFQTTCGYVNHRTDLI 111 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~----~~-~~~~~~i~yv~q~~~~~ 111 (606)
++++++|+|||+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++ .. ...++.+|||+|+..++
T Consensus 14 y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~ 92 (359)
T 3fvq_A 14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ-PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLF 92 (359)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-CSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCC
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-CCCcEEEECCEECcccccccchhhCCEEEEeCCCcCC
Confidence 345689999999999999999999999999999999999998 7899999999987 21 23467899999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
|++||+||+.|+...+ ..++.+.+++++++++.++|++..++++++|||||||||+|||||+.+|++|||||||+||
T Consensus 93 p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~L 169 (359)
T 3fvq_A 93 PHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSAL 169 (359)
T ss_dssp TTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred CCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 9999999999986532 2344566788999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|+..+.++.+.|+++.++.|.|+|+++|+. +++..+||||++|++|+++..|+++++..
T Consensus 170 D~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 170 DEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999888777799999999964 68999999999999999999999998754
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.3e-47 Score=408.07 Aligned_cols=209 Identities=26% Similarity=0.435 Sum_probs=192.3
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++.+|+|||+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ...++.++||+|+..++|++||
T Consensus 14 g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-CCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 45689999999999999999999999999999999999998 789999999999854 2245679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.|+.+.+ ..++++.+++++++++.++|.+..++++++|||||||||+|||||+.+|++|+|||||+|||+..+
T Consensus 93 ~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~ 169 (381)
T 3rlf_A 93 AENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 169 (381)
T ss_dssp HHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHH
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHH
Confidence 99999988753 356677788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.++.+.|+++.++.|.|+|+++|+ .+++..+||||++|++|+++..|+++++..
T Consensus 170 ~~l~~~l~~l~~~~g~tii~vTHd-~~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 170 VQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHHHHHHHHHHHCCEEEEECSC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEECC-HHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999987779999999996 468999999999999999999999998754
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.1e-47 Score=391.84 Aligned_cols=207 Identities=24% Similarity=0.391 Sum_probs=185.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC--c---ccccCeEEEEcCCCC-CCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS--P---QLFQTTCGYVNHRTD-LIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~--~---~~~~~~i~yv~q~~~-~~~~ 113 (606)
+.+|+|||+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|+++. . ..+++.+||++|++. .+..
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~ 99 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFS 99 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCS
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCeEEEECCEECCcccccHHHHhCcEEEEEcCccccccc
Confidence 459999999999999999999999999999999999988 78999999999884 1 235678999999863 4447
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+||+||+.++.... ..++.+..++++++++.+||.+..++++.+|||||||||+||+||+.+|++|+|||||+|||+
T Consensus 100 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~ 176 (275)
T 3gfo_A 100 ASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP 176 (275)
T ss_dssp SBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCH
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 89999999987642 346667778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.++.++++.|++++++.|+|||+++|+. +.+.++||||++|++|++++.|+++++..
T Consensus 177 ~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 177 MGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999733489999999976 57889999999999999999999998754
No 5
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.9e-47 Score=383.83 Aligned_cols=207 Identities=25% Similarity=0.384 Sum_probs=183.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---c----ccCeEEEEcCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---L----FQTTCGYVNHRTDLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~----~~~~i~yv~q~~~~~~ 112 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++... . .++.++|++|++.++|
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~ 96 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIP 96 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCT
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCC
Confidence 579999999999999999999999999999999999998 7899999999987531 1 2346999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
.+||+||+.++...+.....++.+..+++.++++.+++.+. .++++.+|||||||||+|||||+.+|++|+|||||+||
T Consensus 97 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~L 176 (235)
T 3tif_A 97 LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWAL 176 (235)
T ss_dssp TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 99999999998764322234566667889999999999885 49999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|+.++.++++.|++++++.|+|+|+++|++. +.++||||++|++|+++..++++++
T Consensus 177 D~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC--
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhhh
Confidence 9999999999999998766899999999863 5689999999999999999988764
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=5.2e-47 Score=386.56 Aligned_cols=209 Identities=26% Similarity=0.416 Sum_probs=186.2
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC--c---ccccCeEEEEcCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS--P---QLFQTTCGYVNHRTDLI 111 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~--~---~~~~~~i~yv~q~~~~~ 111 (606)
++++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++. . ..+++.++|++|++.++
T Consensus 34 y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~ 112 (263)
T 2olj_A 34 FGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLF 112 (263)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCC
T ss_pred ECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-CCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCC
Confidence 344679999999999999999999999999999999999987 78999999999874 1 12456799999999999
Q ss_pred CCCCHHHHHHHHH-HccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 112 PSLTVEQTLYYAA-HLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 112 ~~lTV~e~l~f~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
+.+||+||+.++. ... ..++.+.+++++++++.++|.+..++++.+|||||||||+||+||+.+|++++|||||+|
T Consensus 113 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~ 189 (263)
T 2olj_A 113 PHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSA 189 (263)
T ss_dssp TTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred CCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCccc
Confidence 9999999999964 322 234445567889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||+.++.++.+.|++++++ |+|||+++|+. +++.++||++++|++|++++.|+++++.+
T Consensus 190 LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 190 LDPEMVGEVLSVMKQLANE-GMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp SCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999765 89999999974 57888999999999999999999988753
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4.8e-47 Score=386.90 Aligned_cols=206 Identities=24% Similarity=0.382 Sum_probs=184.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----------------ccccCeEE
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----------------QLFQTTCG 102 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----------------~~~~~~i~ 102 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++
T Consensus 18 ~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 96 (262)
T 1b0u_A 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT 96 (262)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEE
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEccccccccccccccChhhHHHHhcceE
Confidence 4679999999999999999999999999999999999988 789999999998751 12456799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHH-HccCCCCCCHHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCCC
Q psy10223 103 YVNHRTDLIPSLTVEQTLYYAA-HLSIGPQVSRYVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDPV 180 (606)
Q Consensus 103 yv~q~~~~~~~lTV~e~l~f~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p~ 180 (606)
|++|++.+++.+||+||+.++. ..+ ..++.+.+++++++++.+||.+. .++++++|||||||||+||+||+.+|+
T Consensus 97 ~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 173 (262)
T 1b0u_A 97 MVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPD 173 (262)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred EEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999864 322 23445556788999999999999 999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 181 LLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 181 llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+++|||||+|||+.++..+.+.|++++++ |+|+|+++|+. +++.++||+|++|++|+++..|+++++.
T Consensus 174 lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 174 VLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999765 89999999974 5788899999999999999999998764
No 8
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=6.9e-47 Score=399.99 Aligned_cols=209 Identities=23% Similarity=0.377 Sum_probs=190.2
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ...++.++||+|+..++|++||
T Consensus 26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER-PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-CCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 34579999999999999999999999999999999999998 789999999998753 2346789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.|+.+.+ ..++.+.+++++++++.++|++..++++++|||||||||+|||||+.+|++|+|||||+|||+.++
T Consensus 105 ~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 181 (355)
T 1z47_A 105 YDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIR 181 (355)
T ss_dssp HHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHH
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 99999987643 345566678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.++.+.|+++.++.|.|+|+++|+. +++..+|||+++|++|+++..|+++++.+
T Consensus 182 ~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 182 RELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999876689999999974 67899999999999999999999988753
No 9
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.1e-46 Score=399.68 Aligned_cols=209 Identities=27% Similarity=0.410 Sum_probs=189.7
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ...++.++||+|+..++|++||
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-CCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 34679999999999999999999999999999999999988 789999999998753 2235679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.|+.+.+ ..++.+.+++++++++.++|.+..++++++|||||||||+|||||+.+|++|+|||||+|||+..+
T Consensus 93 ~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 169 (362)
T 2it1_A 93 YKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLR 169 (362)
T ss_dssp HHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHH
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 99999987643 245556678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.++.+.|+++.++.|.|+|+++|+. +++..+||||++|++|+++..|+++++..
T Consensus 170 ~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 170 LEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999776689999999974 57899999999999999999999998853
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-46 Score=381.67 Aligned_cols=209 Identities=22% Similarity=0.334 Sum_probs=186.8
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~l 114 (606)
++++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+
T Consensus 25 y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l 103 (256)
T 1vpl_A 25 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 103 (256)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred ECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCC
Confidence 345689999999999999999999999999999999999987 789999999998753 23567899999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||+||+.+..... ..+..+.+++++++++.+||.+..++++++|||||||||+||+||+.+|++++|||||+|||+.
T Consensus 104 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~ 180 (256)
T 1vpl_A 104 QGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 180 (256)
T ss_dssp BHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred cHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHH
Confidence 9999999876432 2334445567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
++..+++.|+++++ .|+|||+++|++ +++..+||++++|++|++++.|+++++.+
T Consensus 181 ~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 181 NAREVRKILKQASQ-EGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHHHHHHHHHHHH-TTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999975 489999999975 57888999999999999999999988754
No 11
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.4e-46 Score=374.91 Aligned_cols=201 Identities=27% Similarity=0.400 Sum_probs=179.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc------ccc-CeEEEEcCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ------LFQ-TTCGYVNHRTDLI 111 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~------~~~-~~i~yv~q~~~~~ 111 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... .++ +.++|++|++.++
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 94 (224)
T 2pcj_A 16 GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLI 94 (224)
T ss_dssp TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-CSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCC
T ss_pred CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccC
Confidence 3679999999999999999999999999999999999987 7899999999987531 122 5799999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
+.+||+||+.++...+ ..++.+.+++++++++.+||.+..++++++|||||||||+||+||+.+|++++|||||+||
T Consensus 95 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~L 171 (224)
T 2pcj_A 95 PELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNL 171 (224)
T ss_dssp TTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTC
T ss_pred CCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 9999999999976543 2344455678899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecCh
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~ 246 (606)
|+.++..+.+.|++++++ |+|+|+++|+. +.+ ++||++++|++|++++.|+.
T Consensus 172 D~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 172 DSANTKRVMDIFLKINEG-GTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp CHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEeee
Confidence 999999999999999875 89999999985 345 89999999999999998863
No 12
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=6e-47 Score=385.19 Aligned_cols=207 Identities=21% Similarity=0.316 Sum_probs=182.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 19 ~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 97 (257)
T 1g6h_A 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97 (257)
T ss_dssp TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGS
T ss_pred CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCC
Confidence 4579999999999999999999999999999999999988 7899999999987531 2356799999999999999
Q ss_pred CHHHHHHHHHHc-cCCC---------CCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 115 TVEQTLYYAAHL-SIGP---------QVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 115 TV~e~l~f~~~~-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
||+||+.++... .... ...+.+.+++++++++.+||++..++++++|||||||||+||+||+.+|++++|
T Consensus 98 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllL 177 (257)
T 1g6h_A 98 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVM 177 (257)
T ss_dssp BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred cHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999886542 1110 012234456789999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRL 248 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~ 248 (606)
||||+|||+.++.++++.|++++++ |+|||+++|+. +++.++||++++|++|++++.|++++
T Consensus 178 DEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 178 DEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCC-STTGGGCSEEEEEETTEEEEEEESHH
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999765 89999999976 57889999999999999999999888
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=8.8e-47 Score=400.00 Aligned_cols=209 Identities=23% Similarity=0.375 Sum_probs=188.3
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ...++.++||+|+..++|++||
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK-PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-CCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 34679999999999999999999999999999999999988 789999999998853 2235789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.|+.+.+ ..++.+.+++++++++.++|++..++++++|||||||||+|||||+.+|++|+|||||+|||+.++
T Consensus 93 ~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 169 (359)
T 2yyz_A 93 FENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLR 169 (359)
T ss_dssp HHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 99999976432 233444567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.++.+.|+++.++.|.|+|+++|+. +++..+|||+++|++|+++..|+++++.+
T Consensus 170 ~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 170 MIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999876689999999974 57889999999999999999999998854
No 14
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=6.3e-47 Score=386.76 Aligned_cols=206 Identities=24% Similarity=0.385 Sum_probs=184.9
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~l 114 (606)
+++++|+|||+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|+++.. ...++.++|++|++.+++.+
T Consensus 22 ~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS-PSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC-CSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 45689999999999999999999999999999999999988 789999999999853 23456799999999998899
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCC
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVK------DPVLLLLDEPT 188 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~------~p~llllDEPT 188 (606)
||+||+.++.... ...+.+++++++++.+++.+..++++++|||||||||+|||||+. +|++|+|||||
T Consensus 101 tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPt 175 (266)
T 4g1u_C 101 SVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPT 175 (266)
T ss_dssp BHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCC
T ss_pred CHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCcc
Confidence 9999999876432 112345678999999999999999999999999999999999999 99999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+|||+.++.++++.|++++++.++|+|+++|+. +++.++||||++|++|++++.|+++++.
T Consensus 176 s~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 176 SALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999877678999999964 5788999999999999999999998864
No 15
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.9e-46 Score=399.70 Aligned_cols=209 Identities=24% Similarity=0.399 Sum_probs=189.4
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRTDL 110 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~~~ 110 (606)
+++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ...++.++||+|+..+
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-CCccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 34679999999999999999999999999999999999998 789999999988642 1235679999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
+|++||+||+.|+.+.+ ..++.+.+++++++++.++|++..++++++|||||||||+|||||+.+|++|+|||||+|
T Consensus 93 ~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 169 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169 (372)
T ss_dssp CTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTT
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCcc
Confidence 99999999999987643 245556677899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||+.++.++.+.|+++.++.|.|+|+++|+. +++..+|||+++|++|+++..|+++++..
T Consensus 170 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 170 LDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999876689999999974 57899999999999999999999998853
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.2e-46 Score=398.95 Aligned_cols=208 Identities=25% Similarity=0.410 Sum_probs=188.4
Q ss_pred cee--eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCCC
Q psy10223 39 TAL--ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTDL 110 (606)
Q Consensus 39 ~~~--iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~~ 110 (606)
+++ +|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ...++.++||+|+..+
T Consensus 15 ~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l 93 (353)
T 1oxx_K 15 KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (353)
T ss_dssp GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECcccccccCChhhCCEEEEeCCCcc
Confidence 345 9999999999999999999999999999999999988 789999999988642 2246789999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
+|++||+||+.|+.+.+ ..++.+.+++++++++.++|++..++++++|||||||||+|||||+.+|++|+|||||+|
T Consensus 94 ~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~ 170 (353)
T 1oxx_K 94 YPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN 170 (353)
T ss_dssp CTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 99999999999976532 345556678899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||+.++.++.+.|+++.++.|.|+|+++|+. +++..+|||+++|++|+++..|+++++.+
T Consensus 171 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp SCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999776689999999974 57899999999999999999999988753
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.9e-46 Score=399.23 Aligned_cols=209 Identities=20% Similarity=0.330 Sum_probs=182.7
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ...++.++||+|+..++|++||
T Consensus 22 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 22 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 34679999999999999999999999999999999999998 789999999998753 2235679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.|+.+.+ ..++.+.+++++++++.++|++..++++++|||||||||+|||||+.+|++|+|||||+|||+..+
T Consensus 101 ~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 177 (372)
T 1v43_A 101 YENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR 177 (372)
T ss_dssp HHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 99999875432 345566677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.++.+.|+++.++.|.|+|+++|+. +++..+||||++|++|+++..|+++++..
T Consensus 178 ~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 178 VAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999876689999999974 57889999999999999999999998853
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.2e-46 Score=375.26 Aligned_cols=205 Identities=21% Similarity=0.373 Sum_probs=180.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---c-ccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---L-FQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~-~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... . .++.++|++|++.+++.+
T Consensus 18 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~l 96 (240)
T 1ji0_A 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTS
T ss_pred CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCC
Confidence 3679999999999999999999999999999999999987 7899999999987531 1 245699999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA-LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||+||+.++.... ....+..++++++++.++ +.+..++++++|||||||||+||+||+.+|++++|||||+|||+
T Consensus 97 tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~ 172 (240)
T 1ji0_A 97 TVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAP 172 (240)
T ss_dssp BHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCH
T ss_pred cHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCH
Confidence 9999998864211 122234567888999994 99889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++..+++.|+++++ .|+|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 173 ~~~~~l~~~l~~~~~-~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 173 ILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999976 589999999974 5788999999999999999999988764
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.3e-46 Score=392.70 Aligned_cols=204 Identities=28% Similarity=0.450 Sum_probs=184.7
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++ +|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ...++.++||+|+..++|++||
T Consensus 12 ~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 89 (348)
T 3d31_A 12 KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNV 89 (348)
T ss_dssp SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCH
T ss_pred CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCH
Confidence 345 9999999999999999999999999999999999998 789999999998853 2245679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.|+.+.+. .++. ++++++++.++|++..++++++|||||||||+|||||+.+|++|+|||||+|||+.++
T Consensus 90 ~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~ 163 (348)
T 3d31_A 90 KKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQ 163 (348)
T ss_dssp HHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHH
T ss_pred HHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 999999876431 1221 6789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++.+.|+++.++.|.|+|+++|+. +++..++||+++|++|+++..|+++++.
T Consensus 164 ~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 164 ENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999877789999999974 5789999999999999999999998874
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-45 Score=371.88 Aligned_cols=202 Identities=24% Similarity=0.410 Sum_probs=180.5
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
+|+|+|+++++ |+++|+||||||||||||+|+|+.+ |.+|+|.++|.++.. ...++.++|++|++.+++.+||+||+
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl 91 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHH
Confidence 49999999999 9999999999999999999999987 789999999998753 23467899999999999999999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
.++...+ .....+++++++++.+|+.+..++++++|||||||||+||+||+.+|++++|||||+|||+.++..++
T Consensus 92 ~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~ 166 (240)
T 2onk_A 92 AYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLM 166 (240)
T ss_dssp HTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHH
T ss_pred HHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 8864321 11223567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.|++++++.|+|+|+++|+. +++.++||++++|++|+++..|+++++.+
T Consensus 167 ~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 167 EELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999765588999999974 57889999999999999999999988753
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-45 Score=374.78 Aligned_cols=205 Identities=24% Similarity=0.359 Sum_probs=181.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCC-CCCCCCCHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRT-DLIPSLTVEQ 118 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~-~~~~~lTV~e 118 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++....+++.++|++|++ ..++.+||+|
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 98 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE-PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFD 98 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHH
Confidence 579999999999999999999999999999999999987 78999999999876434567899999995 5667899999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc--hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALS--NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
|+.++.... .+..+.+++++++++.+||. +..++++++|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 99 nl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~ 174 (266)
T 2yz2_A 99 EVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 174 (266)
T ss_dssp HHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHH
Confidence 999865321 11112345788999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
..+.+.|++++++ |+|+|+++|++ +.+..+||++++|++|+++..|+++++.+
T Consensus 175 ~~l~~~l~~l~~~-g~tii~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 175 TDLLRIVEKWKTL-GKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECSCC-TTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999765 89999999986 46788999999999999999999988754
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=7.6e-45 Score=368.25 Aligned_cols=207 Identities=23% Similarity=0.288 Sum_probs=173.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcC--CCCCCeeEEEECCEeCCcc---c-ccCeEEEEcCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR--SSGTTRGEIILDGTPMSPQ---L-FQTTCGYVNHRTDLIP 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~--~~~~~~G~I~~~G~~~~~~---~-~~~~i~yv~q~~~~~~ 112 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+ .+ +.+|+|.++|.++... . .+..++|++|++.+++
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~-p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 93 (250)
T 2d2e_A 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT-VERGEILLDGENILELSPDERARKGLFLAFQYPVEVP 93 (250)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE-EEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CC
T ss_pred CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCceEEEECCEECCCCCHHHHHhCcEEEeccCCcccc
Confidence 46799999999999999999999999999999999998 55 6899999999987531 1 2456899999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-chhhcccCCC-CCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL-SNVARRNISE-LTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~v~~-LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
.+||+|++.+.............+..++++++++.+|+ .+..++++++ |||||||||+||+||+.+|++++|||||+|
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~ 173 (250)
T 2d2e_A 94 GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSG 173 (250)
T ss_dssp SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGT
T ss_pred CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcC
Confidence 99999999986532111112333445678999999999 5889999998 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc-CCeEEEEcCCeEEEecChhH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF-LDRTAYLCLGDLIYAGPTRL 248 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~-~D~v~vL~~G~~v~~G~~~~ 248 (606)
||+.++..+++.|+++++ .|+|+|+++|++ +.+..+ ||++++|++|+++..|+++.
T Consensus 174 LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~-~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 174 LDIDALKVVARGVNAMRG-PNFGALVITHYQ-RILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp TCHHHHHHHHHHHHHHCS-TTCEEEEECSSS-GGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred CCHHHHHHHHHHHHHHHh-cCCEEEEEecCH-HHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999865 589999999986 467777 59999999999999999873
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.1e-45 Score=375.71 Aligned_cols=210 Identities=25% Similarity=0.319 Sum_probs=178.6
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC--c---ccccCeEEEEcCCCCC-
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS--P---QLFQTTCGYVNHRTDL- 110 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~--~---~~~~~~i~yv~q~~~~- 110 (606)
++++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++. . ..+++.++|++|++.+
T Consensus 31 y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~ 109 (279)
T 2ihy_A 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEK 109 (279)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTT
T ss_pred ECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccc
Confidence 344679999999999999999999999999999999999998 78999999998875 2 2356789999998753
Q ss_pred -CCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 111 -IPSLTVEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 111 -~~~lTV~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
.+.+||+||+.++...... ......+..++++++++.+||.+..++++++|||||||||+||+||+.+|++|+|||||
T Consensus 110 ~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPt 189 (279)
T 2ihy_A 110 FQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPA 189 (279)
T ss_dssp SCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTT
T ss_pred cCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 3467999999875321000 01112334567899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEE--EEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAV--LLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~ti--i~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
+|||+.++..+++.|++++++ |+|+ |+++|+. +++.++||++++|++|++++.|+++++
T Consensus 190 s~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 190 AGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999876 8889 9999975 577899999999999999999998775
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=5.9e-44 Score=362.23 Aligned_cols=198 Identities=23% Similarity=0.385 Sum_probs=174.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|. .++.++|++|++.+++.+||+|
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~I~----------~~~~i~~v~q~~~~~~~~tv~e 85 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-PIQGKIE----------VYQSIGFVPQFFSSPFAYSVLD 85 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-CSEEEEE----------ECSCEEEECSCCCCSSCCBHHH
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEE----------EeccEEEEcCCCccCCCCCHHH
Confidence 3579999999999999999999999999999999999998 7899998 2467999999999999999999
Q ss_pred HHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 119 TLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 119 ~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
|+.++...... ......+.+++++++++.+|+.+..++++++|||||||||+||+||+.+|++++|||||+|||+.++.
T Consensus 86 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~ 165 (253)
T 2nq2_C 86 IVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQD 165 (253)
T ss_dssp HHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHH
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 99986532111 00112334567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.+.+.|++++++.|+|+|+++|+. +++.++||++++|++|+ ++.|+++++
T Consensus 166 ~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 166 IVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 999999999775589999999975 56789999999999999 999998775
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.4e-44 Score=370.46 Aligned_cols=205 Identities=20% Similarity=0.346 Sum_probs=174.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .||
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv 109 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSF 109 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBH
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccH
Confidence 579999999999999999999999999999999999988 789999999998743 234667999999998887 599
Q ss_pred HHHHHHHHHccCCCCCCHH----HHHHHHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRY----VRNARIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~----~~~~~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
+||+.++.... ..... .....+.++++.+ |+.+..++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 110 ~enl~~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~ 186 (271)
T 2ixe_A 110 RENIAYGLTRT---PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSA 186 (271)
T ss_dssp HHHHHTTCSSC---CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHhhhcccC---ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 99998864211 11011 1123356778888 788888999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||+.++..+++.|++++++.|+|+|+++|++. .+ ..||+|++|++|+++..|+++++.+
T Consensus 187 LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 187 LDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp CCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999986556899999999753 44 4599999999999999999988754
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.5e-43 Score=362.05 Aligned_cols=219 Identities=21% Similarity=0.299 Sum_probs=182.6
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CCCeeEEEECCEeCCc---ccc-cCeEEEEcCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GTTRGEIILDGTPMSP---QLF-QTTCGYVNHRTDLI 111 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~~~G~I~~~G~~~~~---~~~-~~~i~yv~q~~~~~ 111 (606)
++++++|+|+|+++++||+++|+||||||||||||+|+|+.. .+.+|+|.++|.++.. ... ++.++|++|++.++
T Consensus 30 y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 30 VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 345689999999999999999999999999999999999842 2678999999998743 111 34599999999999
Q ss_pred CCCCHHHHHHHHHH-c---cCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCC-CCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 112 PSLTVEQTLYYAAH-L---SIGPQVSRYVRNARIRQVLADLALS-NVARRNIS-ELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 112 ~~lTV~e~l~f~~~-~---~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~-~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+.+||.|++.+... . ......++.+..++++++++.+|+. +..++++. +|||||||||+||+||+.+|++|+||
T Consensus 110 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLD 189 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILD 189 (267)
T ss_dssp TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 99999999987542 1 1111234444567889999999996 57899997 59999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc-CCeEEEEcCCeEEEecChhHHHHHHHHcCC
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF-LDRTAYLCLGDLIYAGPTRLMLEYFRSIGF 258 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~-~D~v~vL~~G~~v~~G~~~~~~~~f~~~G~ 258 (606)
|||+|||+.++..+++.|+++++ .|+|+|+++|++ +.+..+ ||++++|++|++++.|+++++.. .+..|+
T Consensus 190 EPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 190 ESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp STTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSG-GGGGTSCCSEEEEEETTEEEEEECTTHHHH-HHTTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcch
Confidence 99999999999999999999864 489999999975 456665 89999999999999999988754 344444
No 27
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=4.7e-44 Score=362.02 Aligned_cols=197 Identities=25% Similarity=0.361 Sum_probs=176.9
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++|+|+|+++++||+++|+||||||||||||+|+|+.+ +. |+|.++|.++.. ..+++.++|++|++.+++.+||+
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 48999999999999999999999999999999999998 67 999999998742 23566799999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCC-------EEEEeCCCCC
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPV-------LLLLDEPTVN 190 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~-------llllDEPTsg 190 (606)
||+.++.. . ... +++++++++.+|+.+..++++++|||||||||+||+||+.+|+ +++|||||+|
T Consensus 92 e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~ 163 (249)
T 2qi9_C 92 HYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS 163 (249)
T ss_dssp HHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTT
T ss_pred HHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCccc
Confidence 99987521 1 112 4568899999999999999999999999999999999999999 9999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
||+.++..+.+.|++++++ |+|+|+++|+. +.+.++||++++|++|+++..|+++++
T Consensus 164 LD~~~~~~l~~~l~~l~~~-g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 164 LDVAQQSALDKILSALSQQ-GLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999765 89999999974 567899999999999999999998776
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.4e-43 Score=358.22 Aligned_cols=197 Identities=23% Similarity=0.396 Sum_probs=169.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .|
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~t 98 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RS 98 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SB
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-cc
Confidence 4679999999999999999999999999999999999988 789999999998753 235668999999998887 59
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhc-----------ccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR-----------RNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-----------~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
|+||+.++.. ... .++++++++.+++.+..+ +++++|||||||||+|||||+.+|++++|
T Consensus 99 v~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllL 169 (247)
T 2ff7_A 99 IIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIF 169 (247)
T ss_dssp HHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999987521 122 234667777777766544 44689999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||||+|||+.++..+++.|++++ .|+|+|+++|++. .+ +.||++++|++|++++.|+++++.
T Consensus 170 DEPts~LD~~~~~~i~~~l~~~~--~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 170 DEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred eCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999984 3899999999864 44 469999999999999999988774
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.7e-43 Score=367.61 Aligned_cols=198 Identities=24% Similarity=0.369 Sum_probs=168.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
.+++|+|||++|++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ..+|+.++||+|++.+|+ .|
T Consensus 66 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~T 143 (306)
T 3nh6_A 66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD-ISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DT 143 (306)
T ss_dssp TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC-CSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EE
T ss_pred CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-cc
Confidence 4679999999999999999999999999999999999998 789999999999864 346778999999999886 59
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-----------hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-----------NVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-----------~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
|+||+.++.. .... +++.++++..++. ...++...+|||||||||+|||||+.+|+||||
T Consensus 144 v~eNi~~~~~-----~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlL 214 (306)
T 3nh6_A 144 IADNIRYGRV-----TAGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILL 214 (306)
T ss_dssp HHHHHHTTST-----TCCH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHhhcc-----cCCH----HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999988642 1222 2344445544443 344555679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||+|||+.+...+.+.|+++.+ ++|+|+++|+.. .+.. ||+|++|++|+++..|+++++.+
T Consensus 215 DEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~-~~~~-aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 215 DEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLS-TVVN-ADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHH-HHHT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChH-HHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999863 689999999753 5554 99999999999999999998865
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=4.3e-43 Score=353.93 Aligned_cols=199 Identities=23% Similarity=0.446 Sum_probs=171.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .|
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~t 91 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GT 91 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EE
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-cc
Confidence 4579999999999999999999999999999999999988 789999999998753 235678999999998887 59
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcc-----------cCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR-----------NISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-----------~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
|+||+.++.. .... .++++++++.+++.+..++ ++.+|||||||||+|||||+.+|++++|
T Consensus 92 v~enl~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllL 163 (243)
T 1mv5_A 92 IRENLTYGLE----GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILML 163 (243)
T ss_dssp HHHHTTSCTT----SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHhhhcc----CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999987532 1122 2456788888888766544 4579999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||+|||+.++..+++.|++++ + |+|+|+++|++. .+ +.||++++|++|+++..|+++++..
T Consensus 164 DEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 164 DEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp ECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999986 3 899999999853 44 5699999999999999999887753
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.6e-42 Score=353.33 Aligned_cols=195 Identities=24% Similarity=0.350 Sum_probs=172.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEE-EEcCCCCCCCCCCHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG-YVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~-yv~q~~~~~~~lTV~e 118 (606)
+++|+|+|++++ ||+++|+||||||||||||+|+|+. |.+|+|.++|.++.....++.++ |++|++.+ .+||+|
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~--p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~e 92 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL--PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVND 92 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS--CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC--CCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHH
Confidence 579999999999 9999999999999999999999998 57899999998874311256799 99999887 899999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
|+.+..... .. .+++++++++.+++. +..++++++|||||||||+||+||+.+|++++|||||+|||+.++.
T Consensus 93 nl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~ 165 (263)
T 2pjz_A 93 IVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRH 165 (263)
T ss_dssp HHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHH
T ss_pred HHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHH
Confidence 999876532 11 135688999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCC-eEEEEcCCeEEEecChhHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLD-RTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D-~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.+.+.|+++++ |+|+++|++ +++.++|| ++++|++|++++.|+++++.+
T Consensus 166 ~l~~~L~~~~~----tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 166 VISRYIKEYGK----EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp HHHHHHHHSCS----EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHHHHHHhcC----cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999998742 999999975 56788999 999999999999999988753
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=4.5e-43 Score=346.92 Aligned_cols=191 Identities=21% Similarity=0.333 Sum_probs=166.6
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCH
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++ ++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++. ..++.++|++|++.+++.+||
T Consensus 20 y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv 95 (214)
T 1sgw_A 20 YDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-PLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISV 95 (214)
T ss_dssp SSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBH
T ss_pred eCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCH
Confidence 344 79999999999999999999999999999999999987 78999999999875 357789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.+...... .. .+ +++++++++.+|+++. ++++.+|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 96 ~enl~~~~~~~~---~~-~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~ 169 (214)
T 1sgw_A 96 EDYLKAVASLYG---VK-VN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 169 (214)
T ss_dssp HHHHHHHHHHTT---CC-CC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTH
T ss_pred HHHHHHHHHhcC---Cc-hH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHH
Confidence 999998765321 11 11 3568899999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
..+++.|++++++ |+|||+++|++ +++..++|+++++ .|++
T Consensus 170 ~~l~~~l~~~~~~-g~tiiivtHd~-~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 170 HKVLKSILEILKE-KGIVIISSREE-LSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHH-HSEEEEEESSC-CTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEe-CCcc
Confidence 9999999999765 88999999986 4688888887744 4543
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=6.8e-42 Score=348.50 Aligned_cols=196 Identities=21% Similarity=0.381 Sum_probs=167.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ + +|+|.++|.++.. ..+++.++|++|++.+++ .||
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv 109 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETI 109 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEH
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCH
Confidence 469999999999999999999999999999999999987 5 8999999998743 235678999999999886 599
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------cccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-----------RRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++.. ... .+++.++++.+++.+.. ++++.+|||||||||+|||||+.+|++++||
T Consensus 110 ~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD 180 (260)
T 2ghi_A 110 KYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFD 180 (260)
T ss_dssp HHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 999987421 112 23456677777765432 3567899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+|||+.++..+++.|+++. + ++|+|+++|++. .+ +.||++++|++|+++..|+++++..
T Consensus 181 EPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 181 EATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999985 3 789999999864 44 5699999999999999999988754
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.4e-42 Score=367.11 Aligned_cols=197 Identities=23% Similarity=0.346 Sum_probs=173.6
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~l 114 (606)
+++.+|+|+|++|++||+++|+||||||||||||+|+|+.+ .+|+|.++|+++.. ..+++.++||+|+..+|+ +
T Consensus 32 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 32 GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 34679999999999999999999999999999999999975 68999999998753 235678999999999998 6
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCC-----------CCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE-----------LTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~-----------LSgGerqRvsIa~aL~~~p~lll 183 (606)
||+||+.+.. ... ++++.++++.++|.+..++++.+ |||||||||+|||||+.+|++||
T Consensus 109 tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLL 178 (390)
T 3gd7_A 109 TFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL 178 (390)
T ss_dssp EHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999985321 122 35678899999999999999988 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||||+|||+.++.++.+.|+++. .++|+|+++|+. +....||||++|++|+++..|+++++.+
T Consensus 179 LDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 179 LDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred EeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999863 478999999985 4566799999999999999999998864
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=7e-41 Score=334.83 Aligned_cols=186 Identities=24% Similarity=0.359 Sum_probs=155.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++| .++|++|++.+++. ||+|
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g----------~i~~v~q~~~~~~~-tv~e 87 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-PSEGKIKHSG----------RISFCSQFSWIMPG-TIKE 87 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEECS----------CEEEECSSCCCCSB-CHHH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-CCccEEEECC----------EEEEEecCCcccCC-CHHH
Confidence 3579999999999999999999999999999999999998 7899999988 49999999998885 9999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-----------RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
|+.++.. ... .+.+++++.+++.+.. ++++.+|||||||||+|||||+.+|++++||||
T Consensus 88 nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEP 157 (229)
T 2pze_A 88 NIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 157 (229)
T ss_dssp HHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred HhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 9987531 111 1233444455554322 334689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 188 TVNLDPLSTYLIVSM-LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 188 TsgLD~~~~~~i~~~-L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+|||+.++..+++. ++++. .++|+|+++|++ +.+ +.||++++|++|+++..|+++++.
T Consensus 158 ts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 158 FGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp TTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCH-HHH-HHCSEEEEEETTEEEEEECHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCCh-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999997 45553 378999999985 344 469999999999999999988775
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=334.75 Aligned_cols=193 Identities=18% Similarity=0.321 Sum_probs=156.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++| .++|++|++.+ +.+||+|
T Consensus 17 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g----------~i~~v~Q~~~~-~~~tv~e 84 (237)
T 2cbz_A 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-KVEGHVAIKG----------SVAYVPQQAWI-QNDSLRE 84 (237)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-EEEEEEEECS----------CEEEECSSCCC-CSEEHHH
T ss_pred CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECC----------EEEEEcCCCcC-CCcCHHH
Confidence 3579999999999999999999999999999999999987 7899999998 39999999864 6889999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-----VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
|+.++... .....+...+..++++.+++.+ ..++++.+|||||||||+|||||+.+|++++|||||+|||+
T Consensus 85 nl~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~ 160 (237)
T 2cbz_A 85 NILFGCQL----EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 160 (237)
T ss_dssp HHHTTSCC----CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCH
T ss_pred HhhCcccc----CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 99875421 1111111111111223333322 24678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH---HHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 194 LSTYLIVSMLS---SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 194 ~~~~~i~~~L~---~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.++..+++.|+ ++. .|+|+|+++|+.. .+ +.||++++|++|+++..|+++++.+
T Consensus 161 ~~~~~i~~~l~~~~~~~--~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 161 HVGKHIFENVIGPKGML--KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp HHHHHHHHHTTSTTSTT--TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 99999999995 342 3789999999864 44 5799999999999999999988754
No 37
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.2e-39 Score=367.71 Aligned_cols=198 Identities=24% Similarity=0.369 Sum_probs=170.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ |.+|+|.++|+++.. ..+|+.++|++|++.+++. ||
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv 433 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD-IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TV 433 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC-CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BH
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC-CCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CH
Confidence 679999999999999999999999999999999999988 789999999999853 3457789999999999885 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhc-----------ccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR-----------RNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-----------~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++.. ...+ +++++++++.+++.+..+ +...+||||||||++|||||+++|++++||
T Consensus 434 ~eni~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlD 505 (582)
T 3b60_A 434 ANNIAYART----EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILD 505 (582)
T ss_dssp HHHHHTTTT----SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHhccCC----CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 999988531 1122 244667777777655433 345789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.++.++.+.|+++.+ |+|+|+++|++. . .+.||||++|++|++++.|+++++.+
T Consensus 506 Epts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 506 EATSALDTESERAIQAALDELQK--NRTSLVIAHRLS-T-IEQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp TTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGG-G-TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHH-H-HHhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999853 899999999864 3 45799999999999999999998764
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=7.1e-40 Score=369.66 Aligned_cols=198 Identities=25% Similarity=0.385 Sum_probs=170.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ |.+|+|.+||+++.. ..+|+.++||+|++.+++. ||
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv 433 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD-VDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TI 433 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cH
Confidence 579999999999999999999999999999999999988 789999999998753 3467889999999999875 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhc-----------ccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR-----------RNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-----------~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++.. + ..+ +++++++++.+++.+..+ ++..+||||||||++|||||+++|++++||
T Consensus 434 ~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlD 505 (582)
T 3b5x_A 434 ANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILD 505 (582)
T ss_pred HHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 999988531 1 122 245667777777665444 345789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+|||+.++..+.+.|+++.+ |+|+|+++|++. . .+.||+|++|++|++++.|+.+++.+
T Consensus 506 Epts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 506 EATSALDTESERAIQAALDELQK--NKTVLVIAHRLS-T-IEQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred CccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH-H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999853 899999999864 3 45799999999999999999988754
No 39
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.5e-40 Score=373.50 Aligned_cols=202 Identities=25% Similarity=0.400 Sum_probs=168.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.+||+++.. ..+|++++||+|++.+++. |
T Consensus 355 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~-~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-t 432 (587)
T 3qf4_A 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID-PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-T 432 (587)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC-CSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-E
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-c
Confidence 4679999999999999999999999999999999999998 789999999998754 3467889999999999975 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHH-----HHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNAR-----IRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
|+||+.++.. ..+.++..+. +.+.++.+ |++...+++..+||||||||++|||||+++|++++|||||
T Consensus 433 v~eni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpt 507 (587)
T 3qf4_A 433 IKENLKWGRE-----DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCT 507 (587)
T ss_dssp HHHHHTTTCS-----SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCC
T ss_pred HHHHHhccCC-----CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 9999987532 1222221111 11222222 4455556778899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
++||+.+..++.+.|+++. .|+|+|+++|++. ....||||++|++|++++.|+++++.+
T Consensus 508 s~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~--~~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 508 SSVDPITEKRILDGLKRYT--KGCTTFIITQKIP--TALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp TTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHH--HHTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhC--CCCEEEEEecChH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999974 4899999999864 346899999999999999999998865
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=8.6e-40 Score=369.88 Aligned_cols=200 Identities=26% Similarity=0.395 Sum_probs=169.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ |.+|+|.++|+++.. ..+|+.++||+|++.+++. ||
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv 434 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD-PASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-SI 434 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC-CSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSS-BH
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCC-CH
Confidence 479999999999999999999999999999999999988 789999999999853 3456789999999999875 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-------ccc----CCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-------RRN----ISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~----v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++.... ...+ +++++++++.+++.+.. |+. ..+|||||||||+|||||+++|++++||
T Consensus 435 ~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlD 508 (595)
T 2yl4_A 435 AENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLD 508 (595)
T ss_dssp HHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99998864210 0122 34577888888875543 333 3789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.++..+.+.|+++.+ ++|+|+++|++. .+ +.||||++|++|++++.|+++++.+
T Consensus 509 Epts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 509 EATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLS-TI-KNANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECSCC---
T ss_pred CcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999864 789999999863 44 5699999999999999999988753
No 41
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=8.5e-40 Score=368.67 Aligned_cols=198 Identities=24% Similarity=0.410 Sum_probs=168.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|+++++||+++|+||||||||||+|+|+|+.+ |.+|+|.++|+++.. ..+|+.++|++|++.+++. |
T Consensus 353 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-t 430 (578)
T 4a82_A 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD-VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-T 430 (578)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC-CSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-B
T ss_pred CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-c
Confidence 3579999999999999999999999999999999999998 789999999998753 3467789999999999986 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-----------hcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-----------ARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
|+||+.++.. ..+. +++.++++..++.+. .+++..+|||||||||+|||||+++|++++|
T Consensus 431 v~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illl 501 (578)
T 4a82_A 431 VKENILLGRP-----TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILIL 501 (578)
T ss_dssp HHHHHGGGCS-----SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999987531 1222 335555655555433 3344568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||+|||+.++..+.+.|+++. .++|+|+++|++. .+ +.||||++|++|++++.|+++++.+
T Consensus 502 DEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 502 DEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred ECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999884 3689999999864 34 5699999999999999999998864
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-39 Score=364.94 Aligned_cols=198 Identities=21% Similarity=0.390 Sum_probs=168.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.+||+++.. ..+|+.++|++|++.+++. |
T Consensus 367 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-t 444 (598)
T 3qf4_B 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD-VDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-T 444 (598)
T ss_dssp SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC-CSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-B
T ss_pred CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC-CCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-c
Confidence 4579999999999999999999999999999999999998 789999999998753 3467889999999998864 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhccc-----------CCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN-----------ISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-----------v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
|+||+.++.. ..++ +++.++++..++.+..++. ..+||||||||++|||||+.+|++++|
T Consensus 445 v~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illl 515 (598)
T 3qf4_B 445 VKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILIL 515 (598)
T ss_dssp HHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred HHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999987521 1121 2345555555555444333 368999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||++||+.+..++.+.|+++. .|+|+|+++|++. .+ +.||+|++|++|++++.|+++++.+
T Consensus 516 DEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 516 DEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred ECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999985 4899999999875 44 5599999999999999999998864
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.1e-38 Score=329.35 Aligned_cols=185 Identities=24% Similarity=0.356 Sum_probs=153.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++| .++|++|++.+++. ||+||
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~en 118 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-PSEGKIKHSG----------RISFCSQNSWIMPG-TIKEN 118 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC-EEEEEEECCS----------CEEEECSSCCCCSS-BHHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECC----------EEEEEeCCCccCcc-cHHHH
Confidence 569999999999999999999999999999999999987 7899999987 48999999988885 99999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-----------RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
+. +.. ... .++++.++.+++.+.. ++.+++|||||||||+|||||+.+|++++|||||
T Consensus 119 l~-~~~------~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt 187 (290)
T 2bbs_A 119 II-GVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (290)
T ss_dssp HH-TTC------CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred hh-Ccc------cch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence 97 321 111 1234455555554332 2345899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-HHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSML-SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L-~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+|||+.++..+++.+ +++. .|+|+|+++|++ +.+ ..||++++|++|+++..|+++++.+
T Consensus 188 s~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 188 GYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp TTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHHhh
Confidence 999999999999974 4553 378999999985 344 5699999999999999999988753
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.2e-37 Score=374.75 Aligned_cols=200 Identities=24% Similarity=0.424 Sum_probs=172.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
..++|+|+|++|+|||.+||+||||||||||+++|.|+.+ |.+|+|.+||.+++. +.+|++++||+|++.+|+. |
T Consensus 1091 ~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-T 1168 (1321)
T 4f4c_A 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD-TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-S 1168 (1321)
T ss_dssp SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC-CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-E
T ss_pred CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc-CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-c
Confidence 4579999999999999999999999999999999999998 789999999999864 4589999999999999986 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-------hcccC----CCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-------ARRNI----SELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v----~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
++|||.++.. +.+.+. +++.++++..++.+. .|+.+ ..||||||||++|||||+++|+||+|
T Consensus 1169 IreNI~~gld---~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiL 1241 (1321)
T 4f4c_A 1169 IAENIIYGLD---PSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLL 1241 (1321)
T ss_dssp HHHHHSSSSC---TTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHhccCC---CCCCCH----HHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999987642 223333 456677777666432 34444 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||||+||+.+...+.+.|+++. .++|+|+++|..+ ....||||+||++|+++++|+++++++
T Consensus 1242 DEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLs--Ti~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1242 DEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLN--TVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp ESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSS--TTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred eCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999874 4899999999763 467799999999999999999999986
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.5e-36 Score=337.38 Aligned_cols=192 Identities=23% Similarity=0.273 Sum_probs=169.4
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
..|+++|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.+ +..++|++|+....+.+||.|++
T Consensus 370 ~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~ 438 (607)
T 3bk7_A 370 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKVEW----------DLTVAYKPQYIKAEYEGTVYELL 438 (607)
T ss_dssp CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBSCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEE----------eeEEEEEecCccCCCCCcHHHHH
Confidence 36899999999999999999999999999999999987 78899875 24699999998888889999988
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
....... ....++++++++.+++.+..++++++|||||||||+||++|+.+|++|+|||||+|||+.++.++.
T Consensus 439 ~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~ 511 (607)
T 3bk7_A 439 SKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 511 (607)
T ss_dssp HHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred HhhhccC-------CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHH
Confidence 7641100 012356788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC--CeEEEecChhHHHH
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL--GDLIYAGPTRLMLE 251 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~--G~~v~~G~~~~~~~ 251 (606)
+.|++++++.|.|+|+++|+ .+++..+||||++|++ |+++..|+++++..
T Consensus 512 ~~l~~l~~~~g~tvi~vsHd-~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 512 RAIRHLMEKNEKTALVVEHD-VLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHHHHTTCEEEEECSC-HHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999987678999999986 4678899999999986 88889999988765
No 46
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-35 Score=362.37 Aligned_cols=199 Identities=22% Similarity=0.389 Sum_probs=171.4
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~l 114 (606)
+++++|+|+|+++++||.++|+||+|||||||+++|.|..+ +.+|+|.+||.++.. +.+|++++||+|++.+|..
T Consensus 429 ~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~-~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~- 506 (1321)
T 4f4c_A 429 PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD-VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC- 506 (1321)
T ss_dssp TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC-CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-
T ss_pred CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc-cccCcccCCCccchhccHHHHhhcccccCCcceeeCC-
Confidence 35689999999999999999999999999999999999998 899999999999864 4578899999999999875
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-------hcc----cCCCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-------ARR----NISELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~----~v~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
|++||+.|+.. ..+. +++.++++..++.+. .++ ....||||||||++||||++++|+|++
T Consensus 507 TI~eNI~~g~~-----~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~Ili 577 (1321)
T 4f4c_A 507 TIEENISLGKE-----GITR----EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILL 577 (1321)
T ss_dssp EHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred chhHHHhhhcc-----cchH----HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEE
Confidence 99999988632 2333 345666666555332 233 335799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||||+||+.+...+.+.|+++. .|+|+|+++|+.+ ..+.||+|++|++|++++.|+.+|+++
T Consensus 578 LDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 578 LDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred EecccccCCHHHHHHHHHHHHHHh--CCCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 999999999999999999999986 4799999999874 578899999999999999999999864
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.3e-36 Score=366.03 Aligned_cols=202 Identities=22% Similarity=0.382 Sum_probs=166.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
.+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+|+.++||+|++.+++. |
T Consensus 402 ~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~-~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-t 479 (1284)
T 3g5u_A 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD-PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-T 479 (1284)
T ss_dssp SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC-CSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-C
T ss_pred CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-c
Confidence 3579999999999999999999999999999999999998 789999999998753 3467789999999999976 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHH-----HHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARI-----RQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v-----~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
|+||+.++.. ..+.++..+.. .+.++.+ |++...++...+|||||||||+|||||+.+|+||+|||||
T Consensus 480 i~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpt 554 (1284)
T 3g5u_A 480 IAENIRYGRE-----DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 554 (1284)
T ss_dssp HHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred HHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 9999998742 22332222111 2223333 2333334556789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
++||+.+...+.+.|+++. .|+|+|+++|+.. .+ ..||+|++|++|++++.|+.+++.+
T Consensus 555 s~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~-~i-~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 555 SALDTESEAVVQAALDKAR--EGRTTIVIAHRLS-TV-RNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHH-HH-TTCSEEEECSSSCCCCEECHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999998874 4899999999753 45 5599999999999999999998864
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=7e-36 Score=333.42 Aligned_cols=193 Identities=23% Similarity=0.267 Sum_probs=168.6
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
..|+++|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.+ +..++|++|+....+.+||.|++
T Consensus 300 ~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~ 368 (538)
T 1yqt_A 300 FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKIEW----------DLTVAYKPQYIKADYEGTVYELL 368 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBCCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEE----------CceEEEEecCCcCCCCCcHHHHH
Confidence 36899999999999999999999999999999999987 78899875 24699999998888889999988
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
........ ...++++++++.+++.+..++++..|||||||||+||++|+.+|++|+|||||+|||+.++.++.
T Consensus 369 ~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~ 441 (538)
T 1yqt_A 369 SKIDASKL-------NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 441 (538)
T ss_dssp HHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred HhhhccCC-------CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH
Confidence 65411100 01346788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC--CeEEEecChhHHHHH
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL--GDLIYAGPTRLMLEY 252 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~--G~~v~~G~~~~~~~~ 252 (606)
+.|++++++.|.|+|+++|+ .+++..+||||++|++ |+++..|+++++...
T Consensus 442 ~~l~~l~~~~g~tvi~vsHd-~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 442 RAIRHLMEKNEKTALVVEHD-VLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp HHHHHHHHHHTCEEEEECSC-HHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred HHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 99999976568999999986 4688999999999996 789999999887653
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.2e-35 Score=358.87 Aligned_cols=199 Identities=24% Similarity=0.394 Sum_probs=165.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|+++.. +.+|+.++||+|++.+++ .||
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti 1123 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD-PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSI 1123 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC-CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBH
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEEcccCCHHHHHhceEEECCCCcccc-ccH
Confidence 469999999999999999999999999999999999988 789999999998754 346888999999998875 699
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-------hcc----cCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-------ARR----NISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~----~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++... ...+.+ ++.+.++..++.+. .|+ ....|||||||||+|||||+++|+||+||
T Consensus 1124 ~eNi~~~~~~---~~~~~~----~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLD 1196 (1284)
T 3g5u_A 1124 AENIAYGDNS---RVVSYE----EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLD 1196 (1284)
T ss_dssp HHHHTCCCSS---CCCCHH----HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEE
T ss_pred HHHHhccCCC---CCCCHH----HHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9999875321 122332 33444444444332 233 34579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+|||+.+...+.+.|++.. .|+|+|+++|+.. .+ ..||||++|++|++++.|+++++.+
T Consensus 1197 EpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1197 EATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp SCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999998853 4899999999864 45 5599999999999999999998865
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.4e-35 Score=325.17 Aligned_cols=193 Identities=20% Similarity=0.239 Sum_probs=166.0
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
..|+++|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.+++ ..++|++|+....+.+||.|++
T Consensus 282 ~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~l 351 (538)
T 3ozx_A 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-ADEGSVTPEK---------QILSYKPQRIFPNYDGTVQQYL 351 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CSBCCEESSC---------CCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECC---------eeeEeechhcccccCCCHHHHH
Confidence 35788899999999999999999999999999999998 7899998653 3589999987777789999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
.+..... ... ....++++++.+++.+..++++.+|||||||||+||+||+.+|++|+|||||+|||+.++.++.
T Consensus 352 ~~~~~~~----~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~ 425 (538)
T 3ozx_A 352 ENASKDA----LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVA 425 (538)
T ss_dssp HHHCSST----TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH
T ss_pred HHhhhhc----cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 8742211 111 1245788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC--CeEEEecChhHHH
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL--GDLIYAGPTRLML 250 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~--G~~v~~G~~~~~~ 250 (606)
+.|++++++.|.|||+++|+ .+++..+||||++|++ |.....+++.++.
T Consensus 426 ~~l~~l~~~~g~tvi~vsHd-l~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 426 KAIKRVTRERKAVTFIIDHD-LSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHHHHHHHTTCEEEEECSC-HHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999987779999999986 4688999999999986 5667777765543
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-35 Score=327.53 Aligned_cols=194 Identities=17% Similarity=0.217 Sum_probs=166.4
Q ss_pred eeeEEeeEEEEeCC-----eEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCC
Q psy10223 40 ALILKDISLEVRPG-----EVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 40 ~~iL~~vs~~v~~G-----e~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~l 114 (606)
+.+++|+|+++++| |+++|+||||||||||||+|+|+.+ +++|+. + .+..++|++|+.......
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-p~~G~~------~----~~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-PDEGQD------I----PKLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-CSBCCC------C----CSCCEEEECSSCCCCCCS
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-CCCCcC------c----cCCcEEEecccccccCCc
Confidence 45789999999999 7899999999999999999999998 777852 1 134699999997766678
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.|++..... . ... ..+.++++++.+++.+..++++.+|||||||||+||+||+.+|++|+|||||+|||+.
T Consensus 429 tv~e~~~~~~~--~--~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~ 501 (608)
T 3j16_B 429 TVRQLFFKKIR--G--QFL---NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSE 501 (608)
T ss_dssp BHHHHHHHHCS--S--TTT---SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHH
T ss_pred cHHHHHHHHhh--c--ccc---cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 99998754321 1 111 1245678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC--CeEEEecChhHHHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL--GDLIYAGPTRLMLEY 252 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~--G~~v~~G~~~~~~~~ 252 (606)
++.++.+.|++++++.|.|+|+++|+ .+++..+||||++|++ |+++..|+++++..-
T Consensus 502 ~~~~i~~ll~~l~~~~g~tviivtHd-l~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 502 QRIICSKVIRRFILHNKKTAFIVEHD-FIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECSC-HHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999999999976668999999986 4688999999999996 899999999888653
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=7.2e-35 Score=333.97 Aligned_cols=223 Identities=21% Similarity=0.308 Sum_probs=144.2
Q ss_pred cccccCceeeeeeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHH---------------------HHHHcCCCCC
Q psy10223 22 ALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALL---------------------EVISRRSSGT 80 (606)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLL---------------------k~L~g~~~~~ 80 (606)
..|+.+...++.+.....+++|+|||++|++||+++|+||||||||||| +++.|+.. +
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-~ 91 (670)
T 3ux8_A 13 GLVPRGSHMDKIIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-P 91 (670)
T ss_dssp ---------CEEEEEEECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC---------------C
T ss_pred CcccCCCCcceEEEcCCCccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-C
Confidence 3455565555554333456799999999999999999999999999998 77777765 4
Q ss_pred C-------eeEEEECCEeCCcccccCeEEEEcCCCC-------------------CCCCCCHHHHHHHHHHccCCCCCCH
Q psy10223 81 T-------RGEIILDGTPMSPQLFQTTCGYVNHRTD-------------------LIPSLTVEQTLYYAAHLSIGPQVSR 134 (606)
Q Consensus 81 ~-------~G~I~~~G~~~~~~~~~~~i~yv~q~~~-------------------~~~~lTV~e~l~f~~~~~~~~~~~~ 134 (606)
. .|.|.++|.+... ..+..+++++|... .++.+||.||+.+........ ...
T Consensus 92 ~~~~i~~~~~~i~~~~~~~~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~-~~~ 169 (670)
T 3ux8_A 92 DVDAIEGLSPAISIDQKTTSR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTE-KEA 169 (670)
T ss_dssp CCSEEESCCCEEEESSCC------CCBHHHHTTCC-------------------------CC------------------
T ss_pred CccceeccccceEecCchhhc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccch-hhh
Confidence 4 4566777665432 12334444444332 356789999998753321110 000
Q ss_pred HHHH------HHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHH
Q psy10223 135 YVRN------ARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDPV--LLLLDEPTVNLDPLSTYLIVSMLSS 205 (606)
Q Consensus 135 ~~~~------~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p~--llllDEPTsgLD~~~~~~i~~~L~~ 205 (606)
.... ....++++.+||.+. .++++.+|||||||||+|||||+.+|+ +|+|||||+|||+.++.++++.|++
T Consensus 170 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~ 249 (670)
T 3ux8_A 170 QIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKS 249 (670)
T ss_dssp ---------CHHHHHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 0000 112245888999875 689999999999999999999999998 9999999999999999999999999
Q ss_pred HHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHH
Q psy10223 206 YAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLML 250 (606)
Q Consensus 206 l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~ 250 (606)
+++ .|.|+|+++|+. + ....||++++| ++|++++.|+++++.
T Consensus 250 l~~-~g~tvi~vtHd~-~-~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 250 MRD-LGNTLIVVEHDE-D-TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HHH-TTCEEEEECCCH-H-HHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHH-cCCEEEEEeCCH-H-HHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 976 589999999975 3 45569999999 899999999998875
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1e-32 Score=321.92 Aligned_cols=187 Identities=19% Similarity=0.298 Sum_probs=158.6
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCC-CCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRT-DLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~-~~~~~lTV 116 (606)
+++.+|+|+|+++++||+++|+||||||||||||+|+| |+| +|.+... +..++|++|+. .+++.+||
T Consensus 446 g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-------CCc--CCCcccc---ceeEEEEcccccccccCCcH
Confidence 44679999999999999999999999999999999995 222 3433221 12478999874 67889999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
.|++.+ .. ... +++++++++.+|+. +..++++++|||||||||+||++|+.+|++|||||||+|||+.+
T Consensus 514 ~e~l~~--~~---~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~ 583 (986)
T 2iw3_A 514 LDFVFE--SG---VGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVN 583 (986)
T ss_dssp HHHHHT--TC---SSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHH
T ss_pred HHHHHH--hh---cCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 999975 21 111 46788999999995 78899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-EecChhHHHH
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAGPTRLMLE 251 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G~~~~~~~ 251 (606)
+..+.+.|++ .|.|+|+++|+ .+.+.++||++++|++|+++ +.|+.++..+
T Consensus 584 ~~~l~~~L~~----~g~tvIivSHd-l~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 584 VAWLVNYLNT----CGITSITISHD-SVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHHHHH----SCSEEEEECSC-HHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHHHHh----CCCEEEEEECC-HHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999987 37899999986 46788999999999999997 7899988754
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=8e-34 Score=316.82 Aligned_cols=182 Identities=20% Similarity=0.293 Sum_probs=152.3
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEE---------EECCEeCCc---c--cccCeEEEEcC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEI---------ILDGTPMSP---Q--LFQTTCGYVNH 106 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I---------~~~G~~~~~---~--~~~~~i~yv~q 106 (606)
.+|+|+| .+++||+++|+||||||||||||+|+|+.+ +++|++ .++|.++.. . ..+..+++++|
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q 113 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ 113 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-CCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECS
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhh
Confidence 5899999 999999999999999999999999999987 677885 355654321 0 12345789988
Q ss_pred CCCCCCC---CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 107 RTDLIPS---LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 107 ~~~~~~~---lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
.....+. .||.|++.... ..++++++++.+|+.+..++++++|||||||||+||+||+.+|++|+
T Consensus 114 ~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLl 181 (538)
T 1yqt_A 114 YVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYF 181 (538)
T ss_dssp CGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7544332 38988875311 11357889999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCC
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLG 238 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G 238 (606)
|||||++||+.++.++.+.|+++++ .|.|+|+++|+ .+.+.++||||++|++|
T Consensus 182 LDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd-~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 182 FDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHD-LAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSC-HHHHHHHCSEEEEEEEE
T ss_pred EECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC-HHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999986 58999999996 46888999999999865
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=8.6e-34 Score=320.05 Aligned_cols=183 Identities=20% Similarity=0.297 Sum_probs=152.5
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEE---------EECCEeCCc---c--cccCeEEEEcC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEI---------ILDGTPMSP---Q--LFQTTCGYVNH 106 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I---------~~~G~~~~~---~--~~~~~i~yv~q 106 (606)
.+|+|+| .+++||+++|+||||||||||||+|+|+.+ +.+|++ .++|.++.. . ..+..+++++|
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q 183 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-PNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ 183 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-CCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECS
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-CCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeec
Confidence 5899999 999999999999999999999999999987 677885 355654321 0 12345788888
Q ss_pred CCCCCC---CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 107 RTDLIP---SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 107 ~~~~~~---~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
.....+ ..||.|++... . . .++++++++.+||++..++++++|||||||||+||+||+.+|++|+
T Consensus 184 ~~~~~~~~~~~tv~e~l~~~------~-~-----~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLl 251 (607)
T 3bk7_A 184 YVDLLPKAVKGKVRELLKKV------D-E-----VGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYF 251 (607)
T ss_dssp CGGGGGGTCCSBHHHHHHHT------C-C-----SSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hhhhchhhccccHHHHhhhh------H-H-----HHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 743322 23999988531 0 0 1347889999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
|||||+|||+.++.++.+.|+++++ .|.|+|+++|+ .+.+..++|+|++|+++.
T Consensus 252 LDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHd-l~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 252 FDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHD-LAVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSC-HHHHHHHCSEEEEEESCT
T ss_pred EECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecC-hHHHHhhCCEEEEECCCc
Confidence 9999999999999999999999986 48999999996 457888999999998653
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=1.9e-32 Score=319.79 Aligned_cols=192 Identities=19% Similarity=0.268 Sum_probs=151.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCC----CCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDL----IPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~----~~~lT 115 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|. ..++|++|+..+ ....|
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~-P~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t 756 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL-PTSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKT 756 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC-CSEEEEEECTT--------CCEEEECHHHHHHGGGCTTSC
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEEcCc--------cceEeeccchhhhhhcccccC
Confidence 579999999999999999999999999999999999988 78999999862 247888876421 12357
Q ss_pred HHHHHHHHHHccC------------C----------------------------------------------------CC
Q psy10223 116 VEQTLYYAAHLSI------------G----------------------------------------------------PQ 131 (606)
Q Consensus 116 V~e~l~f~~~~~~------------~----------------------------------------------------~~ 131 (606)
+.|++.+...... . ..
T Consensus 757 ~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~ 836 (986)
T 2iw3_A 757 PSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVP 836 (986)
T ss_dssp HHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEE
T ss_pred HHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccc
Confidence 7777654321000 0 00
Q ss_pred C--------C--------------------------HHHHHHHHHHHHHHcCCch-h-hcccCCCCCHHHHHHHHHHHHH
Q psy10223 132 V--------S--------------------------RYVRNARIRQVLADLALSN-V-ARRNISELTPSEHRRVVIGTQL 175 (606)
Q Consensus 132 ~--------~--------------------------~~~~~~~v~~~l~~lgL~~-~-~~~~v~~LSgGerqRvsIa~aL 175 (606)
. + +....++++++++.+||.+ . .++++++|||||||||+||++|
T Consensus 837 lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL 916 (986)
T 2iw3_A 837 MMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGT 916 (986)
T ss_dssp CCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHH
Confidence 0 0 0001356788999999975 3 6889999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecC
Q psy10223 176 VKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGP 245 (606)
Q Consensus 176 ~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~ 245 (606)
+.+|++|+|||||+|||+.+...+.+.|+++ +.|||+++|+. +.+.++||++++|++|+++..|+
T Consensus 917 ~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISHD~-e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 917 WQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITHSA-EFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp TTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECSCH-HHHTTTCCEEECCBTTBCCC---
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999988654 56999999874 57889999999999999987764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=4.8e-32 Score=310.53 Aligned_cols=197 Identities=23% Similarity=0.327 Sum_probs=150.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHH----------------------cCCCCCCeeEEEECCEeCCccc-
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS----------------------RRSSGTTRGEIILDGTPMSPQL- 96 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~----------------------g~~~~~~~G~I~~~G~~~~~~~- 96 (606)
+.+|+|||++|++||+++|+||||||||||+++|. |+. ...|.|.++|.++....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~--~~~~~i~~~~~~~~~~~~ 412 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE--HLDKVIDIDQSPIGRTPR 412 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG--GCSEEEECCSSCSCSSTT
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc--ccCceeEeccccCCCCCC
Confidence 45799999999999999999999999999998764 111 12367888877653100
Q ss_pred ----------------c---------------------------cCeEEEEcCCCCCCC---------------------
Q psy10223 97 ----------------F---------------------------QTTCGYVNHRTDLIP--------------------- 112 (606)
Q Consensus 97 ----------------~---------------------------~~~i~yv~q~~~~~~--------------------- 112 (606)
+ ....|++.++..++|
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (670)
T 3ux8_A 413 SNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEV 492 (670)
T ss_dssp CCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTC
T ss_pred cchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhe
Confidence 0 001233333332222
Q ss_pred -----------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCC-
Q psy10223 113 -----------SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDP- 179 (606)
Q Consensus 113 -----------~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p- 179 (606)
.+||.|++.+... . . ..++..+.++.+++.. ..++++.+|||||||||+|||||+.+|
T Consensus 493 ~~~~~~~~~~~~ltv~e~l~~~~~------~-~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 493 TYKGKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp CBTTBCHHHHHTSBHHHHHHHTTT------C-H--HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred eecCCCHHHHhhCCHHHHHHHHHH------h-h--hHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 4799999987532 1 1 2345677888999975 468899999999999999999999987
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHH
Q psy10223 180 --VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLML 250 (606)
Q Consensus 180 --~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~ 250 (606)
++|+|||||+|||+.++.++++.|+++++ .|.|||+++|+.. . ...||||++| ++|++++.|+++++.
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 49999999999999999999999999976 4899999999753 4 4679999999 899999999999874
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.1e-31 Score=299.10 Aligned_cols=175 Identities=15% Similarity=0.208 Sum_probs=140.3
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEE-----------EECCEeCCc---cc--ccCeEEEEcCCCCCC--
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEI-----------ILDGTPMSP---QL--FQTTCGYVNHRTDLI-- 111 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I-----------~~~G~~~~~---~~--~~~~i~yv~q~~~~~-- 111 (606)
+++||+++|+||||||||||||+|+|+.+ |.+|+| .++|.++.. .. ....+....|.....
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEII-PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASK 100 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSC-CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhh
Confidence 56999999999999999999999999987 778988 566765421 00 112344444443222
Q ss_pred -CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 112 -PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 112 -~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
...||.+++.... .+++++++++.+++.+..++++++|||||||||+||+||+.+|++|+|||||++
T Consensus 101 ~~~~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~ 168 (538)
T 3ozx_A 101 FLKGTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSY 168 (538)
T ss_dssp TCCSBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTT
T ss_pred hccCcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 2247887654211 113467899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
||+.++.++.+.|+++++ |+|||+++|+. +++..+||+|++|++|..
T Consensus 169 LD~~~~~~l~~~l~~l~~--g~tii~vsHdl-~~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 169 LDVRERMNMAKAIRELLK--NKYVIVVDHDL-IVLDYLTDLIHIIYGESS 215 (538)
T ss_dssp CCHHHHHHHHHHHHHHCT--TSEEEEECSCH-HHHHHHCSEEEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHhC--CCEEEEEEeCh-HHHHhhCCEEEEecCCcc
Confidence 999999999999999953 89999999864 688999999999987643
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.5e-31 Score=296.21 Aligned_cols=188 Identities=21% Similarity=0.325 Sum_probs=145.3
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEE-----------ECCEeCCc---ccccCe--EEEE
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII-----------LDGTPMSP---QLFQTT--CGYV 104 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~-----------~~G~~~~~---~~~~~~--i~yv 104 (606)
..|++++ .+++||+++|+||||||||||||+|+|+.+ |.+|+|. +.|.++.. ....+. ..+.
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 169 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK-PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIK 169 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC-CCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhc
Confidence 4677777 689999999999999999999999999988 7889872 23322210 001111 2233
Q ss_pred cCCCCC------CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhC
Q psy10223 105 NHRTDL------IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKD 178 (606)
Q Consensus 105 ~q~~~~------~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~ 178 (606)
+|.... -+..++.+.+.... .. ..++++++++.+||.+..++++++|||||||||+||+||+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~l~~~~------~~----~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~ 239 (608)
T 3j16_B 170 PQYVDNIPRAIKGPVQKVGELLKLRM------EK----SPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQE 239 (608)
T ss_dssp CCCTTTHHHHCSSSSSHHHHHHHHHC------CS----CHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSC
T ss_pred hhhhhhhhhhhcchhhHHHHHHhhhh------hh----HHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhC
Confidence 443221 12235666554321 11 135688999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEE
Q psy10223 179 PVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIY 242 (606)
Q Consensus 179 p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~ 242 (606)
|++|+|||||+|||+.++..+.+.|+++++ .|.|+|+++|+ .+++..++|+|++|++|..++
T Consensus 240 p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd-l~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 240 ADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHD-LSVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEEECSC-HHHHHHHCSEEEEEESCTTTE
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHHHHhCCEEEEEeCCcccc
Confidence 999999999999999999999999999976 48899999886 568899999999999876544
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=2.9e-29 Score=292.63 Aligned_cols=199 Identities=26% Similarity=0.384 Sum_probs=153.0
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHH---------HHHHcCCC--C---CCe------eEEEECCEeCCcc-----
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALL---------EVISRRSS--G---TTR------GEIILDGTPMSPQ----- 95 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLL---------k~L~g~~~--~---~~~------G~I~~~G~~~~~~----- 95 (606)
..|+|||++|++||+++|+|+||||||||+ +.+.+... + ..+ +.+.+++.++...
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 469999999999999999999999999997 34444321 0 112 2345554433110
Q ss_pred -c--------------------------------------ccCeEEEEcCCCCCCC------------------------
Q psy10223 96 -L--------------------------------------FQTTCGYVNHRTDLIP------------------------ 112 (606)
Q Consensus 96 -~--------------------------------------~~~~i~yv~q~~~~~~------------------------ 112 (606)
. ..+..|++.++..++|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 0022467777766655
Q ss_pred --------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCC---C
Q psy10223 113 --------SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDP---V 180 (606)
Q Consensus 113 --------~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p---~ 180 (606)
.+||.|++.|... . ....++.++|+.+||... .++++.+|||||||||+||++|+.+| +
T Consensus 758 g~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~ 828 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRT 828 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSE
T ss_pred cCCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCC
Confidence 3678888877432 1 123567889999999763 57889999999999999999999875 7
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHHH
Q psy10223 181 LLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLMLE 251 (606)
Q Consensus 181 llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~~ 251 (606)
||||||||+|||+.+...+++.|+++++ .|.|||+++|+. + +...||+|++| ++|++++.|+++++.+
T Consensus 829 LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVIvI~HdL-~-~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 829 LYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVIVIEHNL-D-VIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-H-HHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-H-HHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 9999999999999999999999999976 489999999975 3 44669999999 8999999999999863
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=2.2e-29 Score=291.95 Aligned_cols=198 Identities=25% Similarity=0.368 Sum_probs=153.5
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHH-cC----------CCCC---Cee------EEEECCEeCCcc-----
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS-RR----------SSGT---TRG------EIILDGTPMSPQ----- 95 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~-g~----------~~~~---~~G------~I~~~G~~~~~~----- 95 (606)
..|+|||++|++||+++|+|+||||||||++.|. |. ..+. ..| .|.++|.++...
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccc
Confidence 3699999999999999999999999999999853 21 1111 123 478888775310
Q ss_pred --------cc---------cCeEEEEcCCCCCC----------------------C------------------------
Q psy10223 96 --------LF---------QTTCGYVNHRTDLI----------------------P------------------------ 112 (606)
Q Consensus 96 --------~~---------~~~i~yv~q~~~~~----------------------~------------------------ 112 (606)
.. .+..||++|...+. +
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhcc
Confidence 00 12246666643221 1
Q ss_pred --------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCC---C
Q psy10223 113 --------SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDP---V 180 (606)
Q Consensus 113 --------~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p---~ 180 (606)
.+||.|++.|... . . ..+++.++|+.+||.. ..++++..|||||||||+||++|+.+| +
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~ 868 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRT 868 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCE
T ss_pred CCCHHHhhhcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCC
Confidence 4678888776321 1 1 1234578999999987 789999999999999999999999865 9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHH
Q psy10223 181 LLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLML 250 (606)
Q Consensus 181 llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~ 250 (606)
++||||||+|||+.++.++++.|+++++ .|.|||+++|+. +. ...||+|++| ++|++++.|+++++.
T Consensus 869 lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl-~~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 869 LYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HH-HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HH-HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 9999999999999999999999999976 589999999974 34 4789999999 789999999998875
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=2.7e-29 Score=290.69 Aligned_cols=198 Identities=22% Similarity=0.280 Sum_probs=150.6
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHH-HHcCC-------CC-----------------CCee-------EEEEC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEV-ISRRS-------SG-----------------TTRG-------EIILD 88 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~-L~g~~-------~~-----------------~~~G-------~I~~~ 88 (606)
..|+|||++|++||+++|+|+||||||||++. |+|.. .+ +.+| .|.++
T Consensus 511 ~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vd 590 (842)
T 2vf7_A 511 NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVD 590 (842)
T ss_dssp TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEEC
T ss_pred cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEEC
Confidence 36999999999999999999999999999996 66432 10 1356 78888
Q ss_pred CEeCCccc-------------cc-------------------------------CeEEEEcCCCCCCC------------
Q psy10223 89 GTPMSPQL-------------FQ-------------------------------TTCGYVNHRTDLIP------------ 112 (606)
Q Consensus 89 G~~~~~~~-------------~~-------------------------------~~i~yv~q~~~~~~------------ 112 (606)
|.++.... .| +..|++..+..++|
T Consensus 591 q~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~ 670 (842)
T 2vf7_A 591 QKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGT 670 (842)
T ss_dssp SSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTC
T ss_pred CeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCc
Confidence 87663110 00 01122211222222
Q ss_pred ------------C--------CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHH
Q psy10223 113 ------------S--------LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVI 171 (606)
Q Consensus 113 ------------~--------lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsI 171 (606)
. +|+.|++.|.. .. . ..+++.++|+.+||.. ..++++..|||||||||+|
T Consensus 671 r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~~-~--~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~L 741 (842)
T 2vf7_A 671 RYNAETLEVEYRGKNIADVLALTVDEAHDFFA------DE-S--AIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKL 741 (842)
T ss_dssp CBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------TS-H--HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHH
T ss_pred ccchhhHhhhhcCCCHHHHHhccHHHHHHHhh------cc-h--HHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHH
Confidence 2 34555544421 11 1 2346789999999987 4689999999999999999
Q ss_pred HHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEE
Q psy10223 172 GTQLVKD---PVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIY 242 (606)
Q Consensus 172 a~aL~~~---p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~ 242 (606)
|++|+.+ |+++||||||+|||+.++.++.+.|+++++ .|.|||+++|+. +.+ +.||+|++| ++|++++
T Consensus 742 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tVIvisHdl-~~i-~~aDrii~L~p~~g~~~G~Iv~ 818 (842)
T 2vf7_A 742 ATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTVIAVEHKM-QVV-AASDWVLDIGPGAGEDGGRLVA 818 (842)
T ss_dssp HHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-TTCSEEEEECSSSGGGCCSEEE
T ss_pred HHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHH-HhCCEEEEECCCCCCCCCEEEE
Confidence 9999996 799999999999999999999999999986 589999999974 456 889999999 7999999
Q ss_pred ecChhHHH
Q psy10223 243 AGPTRLML 250 (606)
Q Consensus 243 ~G~~~~~~ 250 (606)
.|+++++.
T Consensus 819 ~g~~~el~ 826 (842)
T 2vf7_A 819 QGTPAEVA 826 (842)
T ss_dssp EECHHHHT
T ss_pred EcCHHHHH
Confidence 99998864
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.95 E-value=2.5e-28 Score=284.08 Aligned_cols=198 Identities=22% Similarity=0.333 Sum_probs=150.2
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHH-c----CCCC--CCee-------------EEEECCEeCCc--c----
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS-R----RSSG--TTRG-------------EIILDGTPMSP--Q---- 95 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~-g----~~~~--~~~G-------------~I~~~G~~~~~--~---- 95 (606)
.|+|||++|++||+++|+|+||||||||+++|. | ...+ +..| .|.+++.++.. .
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 699999999999999999999999999999853 2 2211 1223 24455554421 0
Q ss_pred -------cc---------cCeEEEEcCCCCC----------------------CC-------------------------
Q psy10223 96 -------LF---------QTTCGYVNHRTDL----------------------IP------------------------- 112 (606)
Q Consensus 96 -------~~---------~~~i~yv~q~~~~----------------------~~------------------------- 112 (606)
.. .+..+|++|...+ .+
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 00 1124555554221 11
Q ss_pred -------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCC---CE
Q psy10223 113 -------SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDP---VL 181 (606)
Q Consensus 113 -------~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p---~l 181 (606)
.+||.|++.|... . . ..+++.++|+.+||.. ..++++..|||||||||+||++|+.+| ++
T Consensus 817 ~si~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~l 887 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP------I-A--GVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTV 887 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT------C-H--HHHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEE
T ss_pred CCHHHHhhccHHHHHHHhhc------c-h--HHHHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCE
Confidence 3577777765332 1 1 1234578999999987 678999999999999999999999865 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHHH
Q psy10223 182 LLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLMLE 251 (606)
Q Consensus 182 lllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~~ 251 (606)
+||||||+|||+.++..+++.|+++++ .|.|||+++|+. +. .+.||+|++| ++|++++.|+++++.+
T Consensus 888 LILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl-~~-i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 888 YILDEPTTGLHFDDIRKLLNVINGLVD-KGNTVIVIEHNL-DV-IKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HH-HTTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HH-HHhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 999999999999999999999999976 589999999974 34 4789999999 7899999999998754
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=2.5e-27 Score=255.80 Aligned_cols=199 Identities=16% Similarity=0.184 Sum_probs=145.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-------------------------------------CCe
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-------------------------------------TTR 82 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-------------------------------------~~~ 82 (606)
..+++++++++++| +++|+|||||||||||++|+++..+ +.+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45799999999999 9999999999999999999766531 236
Q ss_pred eEEEECCEeCCcc---cc-cCeEEEEcCCCCCCCCCCHHHHHHHHHHcc-----------------------CCCCCC--
Q psy10223 83 GEIILDGTPMSPQ---LF-QTTCGYVNHRTDLIPSLTVEQTLYYAAHLS-----------------------IGPQVS-- 133 (606)
Q Consensus 83 G~I~~~G~~~~~~---~~-~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~-----------------------~~~~~~-- 133 (606)
|++.+||.+++.. .+ +..+++++|++.++.. +..+...|.-... ......
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 8899999998642 22 3348999999876543 5554444422110 000000
Q ss_pred --------------------------------HHHHHHHHHHHHHHcCCchhh----------------c----------
Q psy10223 134 --------------------------------RYVRNARIRQVLADLALSNVA----------------R---------- 155 (606)
Q Consensus 134 --------------------------------~~~~~~~v~~~l~~lgL~~~~----------------~---------- 155 (606)
.....+.+.+.++.+++.+.. +
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 000123344555666554310 0
Q ss_pred ----ccCCC-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc
Q psy10223 156 ----RNISE-LTPSEHRRVVIGTQLVKDP--VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF 228 (606)
Q Consensus 156 ----~~v~~-LSgGerqRvsIa~aL~~~p--~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~ 228 (606)
+.++. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ .|.+||+++|++ ++.+.
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~--~~~~~ 361 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLA--QIAAR 361 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCH--HHHTT
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcH--HHHhh
Confidence 22223 6999999999999999999 9999999999999999999999999997 378999999985 56789
Q ss_pred CCeEEEE----cCCeEEEec
Q psy10223 229 LDRTAYL----CLGDLIYAG 244 (606)
Q Consensus 229 ~D~v~vL----~~G~~v~~G 244 (606)
||++++| ++|+++...
T Consensus 362 ~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 362 AHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp CSEEEEEEEEEETTEEEEEE
T ss_pred cCeEEEEEEeccCCceEEEE
Confidence 9999999 999987653
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.1e-31 Score=289.11 Aligned_cols=186 Identities=12% Similarity=0.127 Sum_probs=149.6
Q ss_pred EeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCee-E-EEECCEeCCcccccCeEEEEcCCCC---CCCCCCHHH
Q psy10223 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG-E-IILDGTPMSPQLFQTTCGYVNHRTD---LIPSLTVEQ 118 (606)
Q Consensus 44 ~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G-~-I~~~G~~~~~~~~~~~i~yv~q~~~---~~~~lTV~e 118 (606)
.++|+++++||+++|+||||||||||+|+|+|+.. +.+| + |.++|. .++.++|++|+.. +.+.+||+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchhh
Confidence 47899999999999999999999999999999987 6789 8 999982 3567999999974 456689999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC-CCCCC
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQ--LVKDPVL----LLLDE-PTVNL 191 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~a--L~~~p~l----lllDE-PTsgL 191 (606)
|+ |+....... . ..+++.++++.+|+++..+ +++|||||||||+||++ |+.+|++ ++||| ||++|
T Consensus 202 ni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~L 273 (460)
T 2npi_A 202 PT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQL 273 (460)
T ss_dssp TT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGS
T ss_pred hh-cccccccCc--c---hHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCccccc
Confidence 88 654321110 0 1234566788889988776 88999999999999999 9999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcc-----hHHhcCCe-----EEEEc-CCeEEEecChhHHH
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRS-----DVLPFLDR-----TAYLC-LGDLIYAGPTRLML 250 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~-----~i~~~~D~-----v~vL~-~G~~v~~G~~~~~~ 250 (606)
|+. ...+.++++ +.+.|+|+++|+..+ ++.+++|+ |++|+ +|+++ .|+++++.
T Consensus 274 D~~-~~~l~~l~~----~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 274 DEN-LAELHHIIE----KLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp CSS-CHHHHHHHH----HTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred Chh-HHHHHHHHH----HhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 999 444444443 346788888887641 55689999 99999 99999 99987653
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.92 E-value=1e-24 Score=232.30 Aligned_cols=85 Identities=16% Similarity=0.214 Sum_probs=77.2
Q ss_pred cccCCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc
Q psy10223 155 RRNISELTPSEHRRVVIGTQLV------KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF 228 (606)
Q Consensus 155 ~~~v~~LSgGerqRvsIa~aL~------~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~ 228 (606)
++++.+|||||||||+||+||+ .+|++++|||||+|||+.++..+++.|+++.+ .|.|||+++|++ +..+.
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~--~~~~~ 350 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDR--EFSEA 350 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCH--HHHTT
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHh
Confidence 5678899999999999999999 79999999999999999999999999999975 589999999975 34788
Q ss_pred CCeEEEEcCCeEEE
Q psy10223 229 LDRTAYLCLGDLIY 242 (606)
Q Consensus 229 ~D~v~vL~~G~~v~ 242 (606)
+|++++|++|+++.
T Consensus 351 ~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 351 FDRKLRITGGVVVN 364 (365)
T ss_dssp CSCEEEEETTEEC-
T ss_pred CCEEEEEECCEEEe
Confidence 99999999999864
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=1.6e-24 Score=226.93 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=77.3
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc
Q psy10223 153 VARRNISELTPSEHRRVVIGTQLV----KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF 228 (606)
Q Consensus 153 ~~~~~v~~LSgGerqRvsIa~aL~----~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~ 228 (606)
..+.++..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|++++ .+.++|+++|++ ++.+.
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~--~~~~~ 287 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNK--IVMEA 287 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCT--TGGGG
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCH--HHHhh
Confidence 356678899999999999999997 5789999999999999999999999999984 378999999984 57889
Q ss_pred CCeE--EEEcCCe-EEEecChhHHH
Q psy10223 229 LDRT--AYLCLGD-LIYAGPTRLML 250 (606)
Q Consensus 229 ~D~v--~vL~~G~-~v~~G~~~~~~ 250 (606)
||++ ++|.+|+ .+.....+++.
T Consensus 288 ~d~~~~v~~~~g~s~~~~~~~~~~~ 312 (322)
T 1e69_A 288 ADLLHGVTMVNGVSAIVPVEVEKIL 312 (322)
T ss_dssp CSEEEEEEESSSCEEEEECCC----
T ss_pred CceEEEEEEeCCEEEEEEEEcchhh
Confidence 9987 8888886 45555555543
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.91 E-value=2.4e-27 Score=233.26 Aligned_cols=141 Identities=13% Similarity=0.147 Sum_probs=102.6
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC--cccccCeEEEEcCCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS--PQLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~--~~~~~~~i~yv~q~~~~~~~lT 115 (606)
+.+.+|+|+ ++||+++|+||||||||||||+|+|+ + +.+|+|.. .++. ....++.++|++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-LQSKQVSR--IILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H-HHTTSCSE--EEEEECSCCTTCCCCSSCC---------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C-CcCCeeee--EEecCCchhhhcceEEecCCH-------
Confidence 446789996 89999999999999999999999999 6 77888842 2221 123467899999975
Q ss_pred HHHHH-HHHH----HccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 116 VEQTL-YYAA----HLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 116 V~e~l-~f~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
+||+ .+.. ... .... .++++++++. ++ ||||||+||+||+.+|++++|||||+|
T Consensus 76 -~enl~~~~~~~~~~~~--~~~~----~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 76 -NEKIDPYLRPLHDALR--DMVE----PEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp -----CTTTHHHHHHHT--TTSC----TTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred -HHHHHHHHHHHHHHHH--Hhcc----HHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 3444 2210 111 0011 1345666654 43 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
++.++.+.|+++ + .|+|+| ++|+.
T Consensus 135 ----~~~~l~~~l~~l-~-~g~tii-vtHd~ 158 (208)
T 3b85_A 135 ----TPAQMKMFLTRL-G-FGSKMV-VTGDI 158 (208)
T ss_dssp ----CHHHHHHHHTTB-C-TTCEEE-EEEC-
T ss_pred ----cHHHHHHHHHHh-c-CCCEEE-EECCH
Confidence 888999999988 4 488999 88875
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.89 E-value=6.4e-27 Score=252.01 Aligned_cols=171 Identities=15% Similarity=0.154 Sum_probs=135.6
Q ss_pred eeeEEeeEEEEeCCe--------------------EEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccC
Q psy10223 40 ALILKDISLEVRPGE--------------------VLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQT 99 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge--------------------~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~ 99 (606)
+.+|+++|+++++|| +++|+||||||||||+|+|+|+.+ +.+|+|.++|.+.+ +.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-p~~GsI~~~g~~~t----~~ 110 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-EEEGAAKTGVVEVT----ME 110 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-TSTTSCCCCC--------CC
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-ccCceEEECCeecc----ee
Confidence 468999999999999 999999999999999999999987 78899999987653 22
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHH--HHHHHHHHHHHhh
Q psy10223 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPS--EHRRVVIGTQLVK 177 (606)
Q Consensus 100 ~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgG--erqRvsIa~aL~~ 177 (606)
++++|++ .++.+|+.|++.+... +.+++++++.+++.+... .+. ||+| ||||+.||++|+.
T Consensus 111 --~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~~~-~~~-lS~G~~~kqrv~la~aL~~ 173 (413)
T 1tq4_A 111 --RHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEYDF-FII-ISATRFKKNDIDIAKAISM 173 (413)
T ss_dssp --CEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGCSE-EEE-EESSCCCHHHHHHHHHHHH
T ss_pred --EEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCccCC-eEE-eCCCCccHHHHHHHHHHHh
Confidence 6788874 5788999988754321 124678899999876533 333 9999 9999999999999
Q ss_pred ----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hC----CcEEEEEecCCcc-hHHhcCCeE
Q psy10223 178 ----------DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK----RK----SRAVLLTMEKPRS-DVLPFLDRT 232 (606)
Q Consensus 178 ----------~p~llllDEPTsgLD~~~~~~i~~~L~~l~~----~~----g~tii~t~h~~~~-~i~~~~D~v 232 (606)
+|+++++||||+|||+.++.++.+.|+++.+ +. ..++++++|...+ ++.+++|++
T Consensus 174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 9999999999999999999999999999852 22 3567788876432 255555554
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=9.4e-25 Score=209.63 Aligned_cols=146 Identities=14% Similarity=0.073 Sum_probs=106.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ 131 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~ 131 (606)
.++|+||||||||||+|+|+|... |.++|.+... ...++.++|++|+. ++.+++ + +...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~---- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF---- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc----
Confidence 589999999999999999999864 2344433211 13456799999975 222222 1 1100
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q psy10223 132 VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQ-----LVKDPVLLLLDE--PTVNLDPLSTYLIVSMLS 204 (606)
Q Consensus 132 ~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~a-----L~~~p~llllDE--PTsgLD~~~~~~i~~~L~ 204 (606)
.. -.+..++++..||||||||++||++ ++.+|++++||| ||++||+.....+.+.|+
T Consensus 64 ~~----------------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 64 FT----------------SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp CC----------------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred CC----------------ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 00 0134677888999999999999996 999999999999 999999999999888886
Q ss_pred HHHHhCCcEEEEEec--CCcchHHhcCCeEEEEcCCeEEE
Q psy10223 205 SYAKRKSRAVLLTME--KPRSDVLPFLDRTAYLCLGDLIY 242 (606)
Q Consensus 205 ~l~~~~g~tii~t~h--~~~~~i~~~~D~v~vL~~G~~v~ 242 (606)
+ .+.|+|+++| |+...+.+++|+ .+|+++.
T Consensus 128 ~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 4 4677888887 667778888888 5677665
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.88 E-value=2.8e-24 Score=204.55 Aligned_cols=143 Identities=13% Similarity=0.171 Sum_probs=98.0
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAA 124 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~ 124 (606)
|||+++++||+++|+||||||||||+|++.+-. ..++ ....+ ++++|++.. ..+.+..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~-------~~~~-----~d~~~---g~~~~~~~~---~~~~~~~---- 58 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT-------EVIS-----SDFCR---GLMSDDEND---QTVTGAA---- 58 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG-------GEEE-----HHHHH---HHHCSSTTC---GGGHHHH----
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC-------eEEc-----cHHHH---HHhcCcccc---hhhHHHH----
Confidence 689999999999999999999999999865311 1111 11112 445554321 0111100
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------
Q psy10223 125 HLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL---------- 194 (606)
Q Consensus 125 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~---------- 194 (606)
...... ..+.....|.....+. ....|||||||++||++++.+|++++|||||++||+.
T Consensus 59 ---------~~~~~~-~~~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~ 127 (171)
T 4gp7_A 59 ---------FDVLHY-IVSKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVE 127 (171)
T ss_dssp ---------HHHHHH-HHHHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCC
T ss_pred ---------HHHHHH-HHHHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCC
Confidence 000011 1122223455444443 3456999999999999999999999999999999999
Q ss_pred ------HHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 195 ------STYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 195 ------~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
.+.++.+.|++++++ |.|+|+++|++
T Consensus 128 ~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~ 159 (171)
T 4gp7_A 128 EYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSP 159 (171)
T ss_dssp HHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSH
T ss_pred HHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCH
Confidence 668999999998776 89999999974
No 72
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.88 E-value=8.7e-27 Score=228.43 Aligned_cols=183 Identities=9% Similarity=-0.018 Sum_probs=127.5
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+..++++| .++++||+++|+||||||||||+|+|+|+.+ ...+.+.+.+.+.. ...++.++|++|++..++.+|+.
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~-~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP-NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHST-TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC-ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhc
Confidence 34568888 6999999999999999999999999999875 33333222222111 12346789999998888888887
Q ss_pred HHHHHHHHccC---CCCCCHHHHHHHHHHH------HHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 118 QTLYYAAHLSI---GPQVSRYVRNARIRQV------LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 118 e~l~f~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
+++........ ..+.++.+.++++++. ++.+|+.+..+++++.|| +|+.+|++++|||||
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~ 151 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARL 151 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHH
Confidence 77532211000 0123344455566665 667777778888889998 999999999999999
Q ss_pred CCC----CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc
Q psy10223 189 VNL----DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 189 sgL----D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~ 236 (606)
+|| |+..+.++.+.++++.++.|.|+|+++|+ .+++.++||||++|.
T Consensus 152 ~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHd-l~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 152 IGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRR-LESACAELVSLLVGT 202 (207)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSS-HHHHHHHHHHHHC--
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCC-HHHHHHHHHHHHHhc
Confidence 998 78899999999999986668999999886 568999999999985
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.86 E-value=5.6e-24 Score=220.82 Aligned_cols=175 Identities=15% Similarity=0.212 Sum_probs=136.9
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-------cc--cCeEEEEcCCCC-CCC
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-------LF--QTTCGYVNHRTD-LIP 112 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-------~~--~~~i~yv~q~~~-~~~ 112 (606)
++++|+.+++|++++|+||||||||||++.|+|+.+ +.+|+|.++|.+.... .+ +..++|++|++. ++|
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 357899999999999999999999999999999987 6789999999886431 12 346999999988 899
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPV--LLLLDEPTVN 190 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~--llllDEPTsg 190 (606)
.+||+|++.++.... .. ..+++.+|+.+..++++++|| |||++||++++.+|+ +|+|| ||+|
T Consensus 169 ~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 999999998865311 00 134567788888888899999 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc--------chHHhcCCeEEEEcCCeE
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPR--------SDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~--------~~i~~~~D~v~vL~~G~~ 240 (606)
||+.... +++.+..|.|+|+++|.+. +.+....+.|.++..|+.
T Consensus 233 lD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 233 LNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred cCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9998652 4555456888888888432 123345567788877754
No 74
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.86 E-value=1.2e-25 Score=232.89 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=119.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH-
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ- 118 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e- 118 (606)
+++|+|+|++|++||+++|+||||||||||+++|+|+. +|+|. +|++|++.+++. |++|
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~---------------~~v~q~~~lf~~-ti~~~ 172 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVL---------------SFANHKSHFWLA-SLADT 172 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEE---------------CGGGTTSGGGGG-GGTTC
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEE---------------EEecCccccccc-cHHHH
Confidence 46899999999999999999999999999999999987 58873 345666666653 6665
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+.. ..+. .+.+.++.+ |.+..+ ...|||||||| ||||+.+|+||| |++||+.+...
T Consensus 173 ni~~~~------~~~~-----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~ 231 (305)
T 2v9p_A 173 RAALVD------DATH-----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDR 231 (305)
T ss_dssp SCEEEE------EECH-----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGG
T ss_pred hhccCc------cccH-----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHH
Confidence 655421 1121 344555553 444444 78999999999 999999999999 99999999888
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHHHc
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSI 256 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~~~ 256 (606)
+..+ +|++ ...+.+|+| +|++|++++.|+.+++...|.++
T Consensus 232 i~~l---------------tH~~--~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 232 YLYL---------------HSRV--QTFRFEQPC-TDESGEQPFNITDADWKSFFVRL 271 (305)
T ss_dssp GGGG---------------TTTE--EEEECCCCC-CCC---CCCCCCHHHHHHHHHHS
T ss_pred HHHH---------------hCCH--HHHHhCCEE-EEeCCEEEEeCCHHHHHHHHHHH
Confidence 7521 4543 356789999 99999999999999996666554
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.85 E-value=4.8e-24 Score=217.93 Aligned_cols=146 Identities=14% Similarity=0.187 Sum_probs=99.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSR 134 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~ 134 (606)
.++|+||||||||||+|+|+|... +.+|+|.++|.++.....++.++|++|++.+++.+||.||+.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH-
Confidence 479999999999999999999987 7889999999887554456789999999999999999999988754321 111
Q ss_pred HHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q psy10223 135 YVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214 (606)
Q Consensus 135 ~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~ti 214 (606)
.+.+.+.+. .+..+..+.+||||||||++|||+++. ++++|||+.|||+.. .+.++.+.+. .++
T Consensus 80 ---~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~--~~v 143 (270)
T 3sop_A 80 ---WEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV--VNI 143 (270)
T ss_dssp ---SHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT--SEE
T ss_pred ---HHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc--CcE
Confidence 122333333 455667788999999999999999876 999999999999987 4556666543 788
Q ss_pred EEEecC
Q psy10223 215 LLTMEK 220 (606)
Q Consensus 215 i~t~h~ 220 (606)
|+++|.
T Consensus 144 I~Vi~K 149 (270)
T 3sop_A 144 IPVIAK 149 (270)
T ss_dssp EEEETT
T ss_pred EEEEec
Confidence 888775
No 76
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.84 E-value=8.9e-21 Score=219.63 Aligned_cols=109 Identities=28% Similarity=0.448 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q psy10223 138 NARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDP--VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214 (606)
Q Consensus 138 ~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p--~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~ti 214 (606)
.++++ .|+.+||.+. .++.+.+|||||||||.||++|+.+| ++++|||||+|||+.....+.++|+++.+ .|.||
T Consensus 357 ~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~-~G~TV 434 (842)
T 2vf7_A 357 VKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR-GGNSL 434 (842)
T ss_dssp HHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEE
T ss_pred HHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH-cCCEE
Confidence 34454 6788999876 79999999999999999999999999 59999999999999999999999999975 68999
Q ss_pred EEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHH
Q psy10223 215 LLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLML 250 (606)
Q Consensus 215 i~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~ 250 (606)
|+++|+. ++.+.+|+|++| ++|++++.|+++++.
T Consensus 435 IvVeHdl--~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 435 FVVEHDL--DVIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp EEECCCH--HHHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred EEEcCCH--HHHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 9999975 366789999999 799999999988764
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.83 E-value=9.2e-23 Score=215.95 Aligned_cols=173 Identities=16% Similarity=0.221 Sum_probs=136.8
Q ss_pred EeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-------cc--cCeEEEEcCCCC-CCCC
Q psy10223 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-------LF--QTTCGYVNHRTD-LIPS 113 (606)
Q Consensus 44 ~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-------~~--~~~i~yv~q~~~-~~~~ 113 (606)
+++|+.+++|++++|+||||||||||++.|+|+.+ +.+|+|.++|.+.... .+ +..++|++|++. ++|.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc-ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 46889999999999999999999999999999987 5689999999886421 12 346999999988 8999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCC
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPV--LLLLDEPTVNL 191 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~--llllDEPTsgL 191 (606)
+||.|++.++.... .. ..+++.+|+.+..++++++|| |||++||++++.+|+ +|+|| ||+||
T Consensus 227 ~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 227 TVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred hhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 99999998865311 00 134567788888888889999 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCc--------chHHhcCCeEEEEcCCe
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPR--------SDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~--------~~i~~~~D~v~vL~~G~ 239 (606)
|+.+.. +++.+..|.|+|+++|.+. +.+....+.|.++..|+
T Consensus 291 D~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 291 NMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp GGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 998653 3455456889888888432 12334556777777765
No 78
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.83 E-value=3.7e-22 Score=205.91 Aligned_cols=186 Identities=14% Similarity=0.117 Sum_probs=123.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCee-EEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG-EIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G-~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
..+|+++++.+++||+++|+||||||||||++.|+|... +.+| .|.+.+.+.....+++++..+.+... +++.+
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-TAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 458999999999999999999999999999999999875 4446 67654443333223233333333221 12223
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC---C---C
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSE-HRRVVIGTQLVKDPVLLLLDEPTV---N---L 191 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGe-rqRvsIa~aL~~~p~llllDEPTs---g---L 191 (606)
++.... .+..+..+.++++++..++. .+..+.++|.+| +||+. |+++..+|+++++||||+ + +
T Consensus 97 ~l~~~~-------~~~~~~~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~ 166 (296)
T 1cr0_A 97 SLKREI-------IENGKFDQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGES 166 (296)
T ss_dssp HHHHHH-------HHHTHHHHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---------
T ss_pred ccccCC-------CCHHHHHHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCC
Confidence 333221 11122233444444332321 233346789999 66666 999999999999999999 5 5
Q ss_pred CH-HHHHHHHHHHHHHHHhCCcEEEEEecCC-cc--------------------hHHhcCCeEEEEcCCeE
Q psy10223 192 DP-LSTYLIVSMLSSYAKRKSRAVLLTMEKP-RS--------------------DVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 192 D~-~~~~~i~~~L~~l~~~~g~tii~t~h~~-~~--------------------~i~~~~D~v~vL~~G~~ 240 (606)
|. ....++.+.|++++++.|.|||+++|.. .+ .+.+.||+|++|++|+.
T Consensus 167 d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 167 DERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 65 6778899999999887799999999985 23 67889999999999874
No 79
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.82 E-value=6.9e-23 Score=222.80 Aligned_cols=179 Identities=12% Similarity=0.135 Sum_probs=142.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCE---eCCc--------ccccCeEEEEcCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT---PMSP--------QLFQTTCGYVNHR 107 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~---~~~~--------~~~~~~i~yv~q~ 107 (606)
+..+|+++ +.+.+||+++|+|||||||||||++|+|+.+ ++.|.|.++|+ ++.. ...++.++|++|+
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-ADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-CSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-CCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 45799999 9999999999999999999999999999987 78899999998 4421 1256789999995
Q ss_pred -CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 108 -TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 108 -~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
+..++.+||.+|+.+.++..... .+++ ....+ .+..+|+|| |||+|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~-------~~~v---------~~~ld-~l~~lS~g~-qrvslA---l~~p~~----- 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDR-------GQHV---------LLIMD-SLTRYAMAQ-REIALA---IGEPPA----- 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTT-------TCEE---------EEEEE-CHHHHHHHH-HHHHHH---TTCCCC-----
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhC-------CCCH---------HHHHH-hHHHHHHHH-HHHHHH---hCCCcc-----
Confidence 55678899999998866421000 0000 01111 256789999 999999 889988
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH---hCCc-----EEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAK---RKSR-----AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~---~~g~-----tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|+|||+.+..++.++++++.+ +.|+ |+++++|+.. ...+|++++|.+|+++..|++.+.
T Consensus 276 -t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 276 -TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp -SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred -cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 999999999999999999865 2364 8888888764 578999999999999999887665
No 80
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.81 E-value=8.5e-22 Score=206.95 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=108.0
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
+++++|+.+++|++++|+||||||||||||+|+|+.+ +.+|.|.++|.+... ...++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-~~~g~i~i~~~~e~~~~~~~~~i~~~~--------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-KEERIISIEDTEEIVFKHHKNYTQLFF--------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-TTSCEEEEESSCCCCCSSCSSEEEEEC---------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCcEEEECCeeccccccchhEEEEEe---------------
Confidence 7899999999999999999999999999999999987 688999999864211 11334455443
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
+ |||+||++||+||..+|+++++||||+ .++.
T Consensus 224 ---------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~ 255 (330)
T 2pt7_A 224 ---------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS-------SEAY 255 (330)
T ss_dssp ---------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHH
T ss_pred ---------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHH
Confidence 0 899999999999999999999999998 2356
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
+.|+.+. .++.|+++++|.+. +.+.+||+++|.+|+.
T Consensus 256 ~~l~~~~-~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 256 DFYNVLC-SGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHH-TTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred HHHHHHh-cCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 7777765 34557899999764 7889999999998863
No 81
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.81 E-value=1.2e-24 Score=215.27 Aligned_cols=170 Identities=9% Similarity=0.008 Sum_probs=111.3
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCCCCCCCCCH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~~~~lTV 116 (606)
.-|+|||+++++|++++|+||||||||||+|+|+|+. + |+|.+ |.+.... ..++.++|++|++..++.++.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~--p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF--P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS--T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC--C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 3699999999999999999999999999999999987 3 88998 7654321 234678999998766554321
Q ss_pred -HHHHHH---HHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHH-----HHHHhhCCCEEEEeCC
Q psy10223 117 -EQTLYY---AAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVI-----GTQLVKDPVLLLLDEP 187 (606)
Q Consensus 117 -~e~l~f---~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsI-----a~aL~~~p~llllDEP 187 (606)
.+++.+ ..+.. +.+. ..++++++...+. ..+ .+||||||||++| +++++.+|++++||||
T Consensus 86 ~~~~l~~~~~~~~~~---g~~~----~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~ 154 (218)
T 1z6g_A 86 NEDFLEYDNYANNFY---GTLK----SEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSR 154 (218)
T ss_dssp TTCEEEEEEETTEEE---EEEH----HHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHH
T ss_pred ccchhhhhhcccccC---CCcH----HHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHH
Confidence 111110 01100 1121 3456666654322 122 5789999999999 8999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
|+++|..+...+.+.|++..++ .+ ..| ...+|.|+++++
T Consensus 155 ~~~~d~~~~~~i~~~l~~~~~~--~~---~~h------~~~~d~iiv~~~ 193 (218)
T 1z6g_A 155 LLTRNTENQEQIQKRMEQLNIE--LH---EAN------LLNFNLSIINDD 193 (218)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHH--HH---HHT------TSCCSEEEECSS
T ss_pred HHhcCCCCHHHHHHHHHHHHHH--HH---hhc------ccCCCEEEECCC
Confidence 9999999999999999887543 22 123 256788777654
No 82
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.81 E-value=7.4e-20 Score=193.88 Aligned_cols=85 Identities=20% Similarity=0.188 Sum_probs=75.0
Q ss_pred ccCC-CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchH
Q psy10223 156 RNIS-ELTPSEHRRVVIGTQLV---------KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDV 225 (606)
Q Consensus 156 ~~v~-~LSgGerqRvsIa~aL~---------~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i 225 (606)
++++ .||||||||++||++|+ .+|+|++|||||++||+..+..+++.|+++. .|+|+++| + ++
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th-~-~~- 332 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTE-L-AP- 332 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESS-C-CT-
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEe-c-cc-
Confidence 3456 79999999999999999 8999999999999999999999999998752 67887777 3 23
Q ss_pred HhcCCeEEEEcCCeEEEecChhHH
Q psy10223 226 LPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 226 ~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.+|++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998765
No 83
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.80 E-value=5.3e-19 Score=186.26 Aligned_cols=80 Identities=24% Similarity=0.357 Sum_probs=71.3
Q ss_pred hcccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHh
Q psy10223 154 ARRNISELTPSEHR------RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLP 227 (606)
Q Consensus 154 ~~~~v~~LSgGerq------RvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~ 227 (606)
.+++++.||||||| |+++|++|+.+|++++|||||+|||+..+..+.+.|+++.+. |.++|+++|++ ++.+
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~--~~~~ 318 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE--ELKD 318 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCG--GGGG
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChH--HHHH
Confidence 45678899999999 677888888899999999999999999999999999998754 78999999973 5789
Q ss_pred cCCeEEEEc
Q psy10223 228 FLDRTAYLC 236 (606)
Q Consensus 228 ~~D~v~vL~ 236 (606)
.||++++|.
T Consensus 319 ~~d~~~~l~ 327 (339)
T 3qkt_A 319 AADHVIRIS 327 (339)
T ss_dssp GCSEEEEEE
T ss_pred hCCEEEEEE
Confidence 999999996
No 84
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.80 E-value=1.6e-21 Score=196.03 Aligned_cols=179 Identities=14% Similarity=0.100 Sum_probs=113.4
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+++++|+|+||++++|++++|+||||||||||+|+|+|++ |.+.++ ..++.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-----G~~~~~-------~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-----GQNEVE-------QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-----TGGGSC-------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-----chhccc-------ccCCceEEEeCCc-CccccCHh
Confidence 4567999999999999999999999999999999999965 222232 2467799999985 77889999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
|++.+....... ..+.....+++.+.++.+ .+..+.++..+|+||+||+.+ ++++.+|+++++|||...+|..
T Consensus 77 ~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--- 149 (245)
T 2jeo_A 77 QKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--- 149 (245)
T ss_dssp HHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH---
T ss_pred HhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH---
Confidence 998775432111 001111123345555543 455677889999999999988 5888899999999998888764
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHH-hcCCeEEEEcCCeEEEecChhHHHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVL-PFLDRTAYLCLGDLIYAGPTRLMLEYF 253 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~-~~~D~v~vL~~G~~v~~G~~~~~~~~f 253 (606)
++++ .+.++++++|... .+. .+++++ ++|+ +.+++.+.+
T Consensus 150 -----l~~~---~~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 150 -----IRDM---FHLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp -----HHTT---CSEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHHHH
T ss_pred -----HHHh---cCeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 2222 3789999988533 333 334434 6675 566666544
No 85
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=5.9e-20 Score=214.45 Aligned_cols=157 Identities=19% Similarity=0.331 Sum_probs=122.5
Q ss_pred cCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCC-C--H--HHHHHHHHHHHHHcC
Q psy10223 75 RRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV-S--R--YVRNARIRQVLADLA 149 (606)
Q Consensus 75 g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~-~--~--~~~~~~v~~~l~~lg 149 (606)
++++ +..++|.++|+++.. +..+||.|++.|.......... . . ....++..+.|..+|
T Consensus 390 ~rl~-~~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vg 452 (916)
T 3pih_A 390 RRLN-REALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVG 452 (916)
T ss_dssp CCBC-TTGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTT
T ss_pred ccCC-hHhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 3444 567889999887642 3346888888875543221110 0 0 011233456788899
Q ss_pred Cchh-hcccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHH
Q psy10223 150 LSNV-ARRNISELTPSEHRRVVIGTQLVKDPV--LLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVL 226 (606)
Q Consensus 150 L~~~-~~~~v~~LSgGerqRvsIa~aL~~~p~--llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~ 226 (606)
|... .++.+.+|||||||||.||++|+++|+ +|+|||||+|||+....++++.|+++.+ .|.|||+++|+. + +.
T Consensus 453 L~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~TvivVtHd~-~-~~ 529 (916)
T 3pih_A 453 LEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGNTVIVVEHDE-E-VI 529 (916)
T ss_dssp CTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTCEEEEECCCH-H-HH
T ss_pred CccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-H-HH
Confidence 9865 689999999999999999999999887 9999999999999999999999999975 589999999974 3 44
Q ss_pred hcCCeEEEE------cCCeEEEecChhHHHH
Q psy10223 227 PFLDRTAYL------CLGDLIYAGPTRLMLE 251 (606)
Q Consensus 227 ~~~D~v~vL------~~G~~v~~G~~~~~~~ 251 (606)
..+|+|++| ++|++++.|+++++.+
T Consensus 530 ~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 530 RNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp HTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred HhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 569999999 9999999999998753
No 86
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.79 E-value=5.4e-22 Score=206.77 Aligned_cols=123 Identities=14% Similarity=0.081 Sum_probs=100.8
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIG 129 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~ 129 (606)
+++|++++|+||||||||||+|+|+|+++ +..|. +.+++++|++.+++. |+.|++.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~-~~~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~---- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA-RWDHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR---- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH-TSTTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC----
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc-ccCCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh----
Confidence 79999999999999999999999999876 44331 458999999999988 99999754221
Q ss_pred CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 130 PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 130 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
.+.+.....+++.++|+.++ ....+.++..|||||+||+++|++++.+|+|+|+|||+..+|+
T Consensus 147 ~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 147 KGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 12222223456778888888 5555678899999999999999999999999999999999987
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.77 E-value=2.9e-19 Score=199.08 Aligned_cols=156 Identities=10% Similarity=0.098 Sum_probs=121.3
Q ss_pred EEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHc
Q psy10223 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHL 126 (606)
Q Consensus 47 s~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~ 126 (606)
++.+++|++++|+||||||||||++.++|... +. |+ +.+.+++|++. .++.++. .+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~-~~-G~--------------~vi~~~~ee~~----~~l~~~~---~~- 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC-AN-KE--------------RAILFAYEESR----AQLLRNA---YS- 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH-TT-TC--------------CEEEEESSSCH----HHHHHHH---HT-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-hC-CC--------------CEEEEEEeCCH----HHHHHHH---HH-
Confidence 55899999999999999999999999999764 22 32 12445566531 1222221 11
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HHHHHHH
Q psy10223 127 SIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL-----STYLIVS 201 (606)
Q Consensus 127 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~-----~~~~i~~ 201 (606)
. +... ++ +...|+.+..+..+..|||||+||+.+|+++..+|+++++| ||+|||.. .+..+.+
T Consensus 331 -~--g~~~-------~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ 398 (525)
T 1tf7_A 331 -W--GMDF-------EE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG 398 (525)
T ss_dssp -T--SCCH-------HH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH
T ss_pred -c--CCCH-------HH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH
Confidence 1 1221 12 33567777888889999999999999999999999999999 99999999 9999999
Q ss_pred HHHHHHHhCCcEEEEEecCCc---------chHHhcCCeEEEEcCCe
Q psy10223 202 MLSSYAKRKSRAVLLTMEKPR---------SDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 202 ~L~~l~~~~g~tii~t~h~~~---------~~i~~~~D~v~vL~~G~ 239 (606)
+++.+++ .|.|+|+++|+.. ..+..+||+|++|++|+
T Consensus 399 ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 399 VTGYAKQ-EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHH-TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHh-CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9998865 5899999999861 45778999999999886
No 88
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.77 E-value=6.8e-19 Score=206.30 Aligned_cols=171 Identities=9% Similarity=0.088 Sum_probs=120.8
Q ss_pred cEEEEE-EEEeecccccCceeeeeeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHH--------cCCCCCC
Q psy10223 11 EYYLKI-DLQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS--------RRSSGTT 81 (606)
Q Consensus 11 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~--------g~~~~~~ 81 (606)
+..+++ +..|+..... .+.+.+++|+++.+++|++++|+||||||||||||+|+ |..- |.
T Consensus 629 ~~~i~i~~~rHP~le~~----------~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~v-pa 697 (934)
T 3thx_A 629 QGRIILKASRHACVEVQ----------DEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV-PC 697 (934)
T ss_dssp SCEEEEEEECCTTTTTC------------CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCB-SE
T ss_pred CcceEeecCccchhhhc----------CCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcc-cc
Confidence 445777 7777654211 12356899999999999999999999999999999993 4322 11
Q ss_pred eeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCC
Q psy10223 82 RGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISEL 161 (606)
Q Consensus 82 ~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~L 161 (606)
.+.. ++.+ +.++ ..+|+. +...+++
T Consensus 698 ~~~~---------------~~~~---d~i~----------------------------------~~ig~~---d~l~~~l 722 (934)
T 3thx_A 698 ESAE---------------VSIV---DCIL----------------------------------ARVGAG---DSQLKGV 722 (934)
T ss_dssp EEEE---------------EECC---SEEE----------------------------------EECC------------
T ss_pred cccc---------------chHH---HHHH----------------------------------HhcCch---hhHHHhH
Confidence 1110 1100 0000 111111 2234578
Q ss_pred CHHHHHHHHHHHHH--hhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCC
Q psy10223 162 TPSEHRRVVIGTQL--VKDPVLLLLDEPTVNLDPLSTYLI-VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLG 238 (606)
Q Consensus 162 SgGerqRvsIa~aL--~~~p~llllDEPTsgLD~~~~~~i-~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G 238 (606)
|+|+++++.+|+++ +++|+++||||||+|||+.....+ ..+++.++++.|.++|+++|. .++.+++|++..+.+|
T Consensus 723 Stf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~--~el~~lad~~~~v~ng 800 (934)
T 3thx_A 723 STFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF--HELTALANQIPTVNNL 800 (934)
T ss_dssp CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC--GGGGGGGGTCTTEEEE
T ss_pred hhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc--HHHHHHhcccceeEee
Confidence 88888888888888 999999999999999999999888 667777776568999999997 3678899999999999
Q ss_pred eEEEecChhHH
Q psy10223 239 DLIYAGPTRLM 249 (606)
Q Consensus 239 ~~v~~G~~~~~ 249 (606)
++...++.+++
T Consensus 801 ~v~~~~~~~~l 811 (934)
T 3thx_A 801 HVTALTTEETL 811 (934)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEecCCcE
Confidence 99988876654
No 89
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.77 E-value=4.8e-19 Score=196.93 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=70.6
Q ss_pred cCCCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEE
Q psy10223 157 NISEL-TPSEHRRVVIGTQLVKDP--VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTA 233 (606)
Q Consensus 157 ~v~~L-SgGerqRvsIa~aL~~~p--~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~ 233 (606)
++..| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |.|||+++|++ ++...||+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~--~~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA--QIAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCH--HHHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEE
Confidence 45677 999999999999999999 99999999999999999999999999975 78999999985 3556799999
Q ss_pred EEcCC
Q psy10223 234 YLCLG 238 (606)
Q Consensus 234 vL~~G 238 (606)
+|++|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99665
No 90
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.76 E-value=2.3e-20 Score=197.19 Aligned_cols=178 Identities=16% Similarity=0.185 Sum_probs=129.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----------ccccCeEEEEcCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----------QLFQTTCGYVNHRT 108 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----------~~~~~~i~yv~q~~ 108 (606)
+..+|+++ +.+.+||+++|+||||||||||+++|+|..+ ++.|.|.+.|++..+ ..+++.+.++.|.+
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-ADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-CSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-CCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 35799999 9999999999999999999999999999987 678999998865211 11345677777754
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh--cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA--RRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
. ...+.+.-... ...+.+.....+ .++. -+.+..+|+|| |||++| +.+|++
T Consensus 136 ~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~----- 188 (347)
T 2obl_A 136 R-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV----- 188 (347)
T ss_dssp S-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC-----
T ss_pred C-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc-----
Confidence 2 22222221110 000111111111 1111 14577899999 899999 688877
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-hCCc-----EEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAK-RKSR-----AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~-~~g~-----tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|+|||+....++.++++++.+ +.|. ||++++|+.. ..+||++.+|.+|+++..|+.++.
T Consensus 189 -t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 189 -RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp -BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred -ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHHc
Confidence 999999999999999999865 4577 7888888754 567999999999999999887765
No 91
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.75 E-value=3.1e-18 Score=199.00 Aligned_cols=135 Identities=19% Similarity=0.326 Sum_probs=111.3
Q ss_pred CCCCHHHHHHHHHHccCCCC---CCH---HHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCC--CEE
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQ---VSR---YVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDP--VLL 182 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~---~~~---~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p--~ll 182 (606)
..+||.|++.|..++..+.. +.+ ++..+++ +.|+.+||... .++.+.+|||||||||.||++|..+| ++|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll 528 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY 528 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 45899999999766542210 000 2334455 45889999875 79999999999999999999999985 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHH
Q psy10223 183 LLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLML 250 (606)
Q Consensus 183 llDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~ 250 (606)
+|||||+|||+.....+++.|+++.+ .|.|||+++|+. + ..+.||+|++| ++|++++.|+++++.
T Consensus 529 ILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl-~-~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 529 VLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDE-D-TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCH-H-HHHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-H-HHHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 99999999999999999999999965 689999999974 3 45689999999 799999999998764
No 92
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.75 E-value=7.9e-20 Score=216.56 Aligned_cols=161 Identities=17% Similarity=0.132 Sum_probs=112.8
Q ss_pred ceeeEEeeEEEEeC-------CeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEE-EEcCCCCC
Q psy10223 39 TALILKDISLEVRP-------GEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG-YVNHRTDL 110 (606)
Q Consensus 39 ~~~iL~~vs~~v~~-------Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~-yv~q~~~~ 110 (606)
++.+++|+++.+++ |++++|+||||||||||||+| |+.. . ..++| ||||+..
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-~-----------------~aqiG~~Vpq~~~- 827 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-V-----------------MAQMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH-H-----------------HHTTTCCEESSEE-
T ss_pred CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH-H-----------------HhheeEEeccCcC-
Confidence 35799999999987 999999999999999999999 8754 1 12344 7888652
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
.+||.|++.. .+|+.+...+....+|++++ ++++|++++++|+++||||||+|
T Consensus 828 --~l~v~d~I~~------------------------rig~~d~~~~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~G 880 (1022)
T 2o8b_B 828 --RLTPIDRVFT------------------------RLGASDRIMSGESTFFVELS-ETASILMHATAHSLVLVDELGRG 880 (1022)
T ss_dssp --EECCCSBEEE------------------------ECC---------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTT
T ss_pred --CCCHHHHHHH------------------------HcCCHHHHhhchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCC
Confidence 3455444310 11222222223345666655 59999999999999999999999
Q ss_pred CCHHHH-HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE--EecChhH
Q psy10223 191 LDPLST-YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI--YAGPTRL 248 (606)
Q Consensus 191 LD~~~~-~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v--~~G~~~~ 248 (606)
+|+... ..++.+|+.++++.|.++|+++|.. +.+...+|++.++ +|++. +.|++++
T Consensus 881 td~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 881 TATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp SCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EEEEEEC-------
T ss_pred CChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cCeEEEEEecCccc
Confidence 999985 5578899988765588999999974 5677789999887 58887 4565443
No 93
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.75 E-value=1.4e-21 Score=217.82 Aligned_cols=170 Identities=14% Similarity=0.078 Sum_probs=122.6
Q ss_pred ceeeEEeeEE-EEeCCeEEEEEcCCCccHHHHHHH--HHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISL-EVRPGEVLAVLGSKGSGKRALLEV--ISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~-~v~~Ge~~~IlG~nGsGKSTLLk~--L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~ 113 (606)
..++|+++++ .+++||+++|+||||||||||+++ ++|..+ +.+|.|.++|.+... ...++.+||++|+....++
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~ 102 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-FDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK 102 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc
Confidence 3568999999 999999999999999999999999 689876 567999999987422 1234567888886432111
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC----
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV---- 189 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs---- 189 (606)
+.+ ..... . ++..++++.+++.+..++.++.||||| |+++++||||+
T Consensus 103 ------l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~~~~~~LS~g~-------------~~~lilDe~t~~~~~ 153 (525)
T 1tf7_A 103 ------LFI---LDASP--D-----PEGQEVVGGFDLSALIERINYAIQKYR-------------ARRVSIDSVTSVFQQ 153 (525)
T ss_dssp ------EEE---EECCC--C-----SSCCSCCSSHHHHHHHHHHHHHHHHHT-------------CSEEEEECSTTTSTT
T ss_pred ------EEE---EecCc--c-----cchhhhhcccCHHHHHHHHHHHHHHcC-------------CCEEEECCHHHHHHh
Confidence 100 00000 0 011223344455555666666677764 78999999998
Q ss_pred -CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcch--------HHhcCCeEEEEcCCe
Q psy10223 190 -NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSD--------VLPFLDRTAYLCLGD 239 (606)
Q Consensus 190 -gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~--------i~~~~D~v~vL~~G~ 239 (606)
+||+..+.++.++++.+++ .|+|+|+++|+.... +..+||+|++|++|+
T Consensus 154 ~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 154 YDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 5699999999999999976 489999999986532 345599999999843
No 94
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.74 E-value=4.7e-18 Score=198.09 Aligned_cols=133 Identities=19% Similarity=0.324 Sum_probs=110.9
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCH----------HHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhC-
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSR----------YVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKD- 178 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~----------~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~- 178 (606)
+..+||.|.+.|...+. .+. ++..+++ +.|+.+||... .++.+.+|||||||||.||++|..+
T Consensus 466 ~~~ltV~e~l~f~enl~----l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~ 540 (993)
T 2ygr_A 466 VCELSIADCADFLNALT----LGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGL 540 (993)
T ss_dssp SSHHHHHHHHHTTTTTT----SCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HhhCCHHHHHHHHHhcC----CCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCC
Confidence 45589999999844332 333 2233444 45788999875 7999999999999999999999999
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHHH
Q psy10223 179 -PVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLMLE 251 (606)
Q Consensus 179 -p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~~ 251 (606)
|++++|||||+|||+.....+.+.|+++.+ .|.|||+++|+. + ..+.+|+|++| ++|++++.|+++++.+
T Consensus 541 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl-~-~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 541 VGVLYVLDEPSIGLHQRDNRRLIETLTRLRD-LGNTLIVVEHDE-D-TIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CSCEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-H-HHHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred CCcEEEEeCcccCCCHHHHHHHHHHHHHHHH-cCCEEEEECCCH-H-HHHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 589999999999999999999999999975 689999999974 3 45689999999 7999999999988754
No 95
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.72 E-value=1.3e-17 Score=155.12 Aligned_cols=83 Identities=23% Similarity=0.315 Sum_probs=74.3
Q ss_pred hcccCCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHh
Q psy10223 154 ARRNISELTPSEHRRVVIG------TQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLP 227 (606)
Q Consensus 154 ~~~~v~~LSgGerqRvsIa------~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~ 227 (606)
.+++++.||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|+|+++|++ ++.+
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~--~~~~ 127 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE--ELKD 127 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCG--GGGG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChH--HHHH
Confidence 4677899999999999886 8999999999999999999999999999999998654 78999999985 5788
Q ss_pred cCCeEEEE--cCCe
Q psy10223 228 FLDRTAYL--CLGD 239 (606)
Q Consensus 228 ~~D~v~vL--~~G~ 239 (606)
.||++++| .+|.
T Consensus 128 ~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 128 AADHVIRISLENGS 141 (148)
T ss_dssp GCSEEEEEEEETTE
T ss_pred hCCEEEEEEcCCCe
Confidence 99999999 4564
No 96
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.72 E-value=2.1e-18 Score=201.63 Aligned_cols=146 Identities=13% Similarity=0.175 Sum_probs=100.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++.+++|+|+.+++|++++|+||||||||||||+|++.......| ..+... ...++. -+.++..+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g------~~vpa~--~~~i~~---~d~i~~~i---- 723 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG------SYVPAE--EATIGI---VDGIFTRM---- 723 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT------CCBSSS--EEEEEC---CSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC------ccccch--hhhhhH---HHHHHHhC----
Confidence 357999999999999999999999999999999997642100001 000000 001111 11122222
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+......+.+|+|++|++.|+++ +++|+++||||||+|||+.....
T Consensus 724 ------------------------------g~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~ 772 (918)
T 3thx_B 724 ------------------------------GAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIA 772 (918)
T ss_dssp ----------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHH
T ss_pred ------------------------------ChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHH
Confidence 22222233456789999999999999 89999999999999999999999
Q ss_pred HH-HHHHHHHHhCCcEEEEEecCCcchHHhcCCeE
Q psy10223 199 IV-SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRT 232 (606)
Q Consensus 199 i~-~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v 232 (606)
+. .+++.++++.|.++|+++|+. ++.+++|+.
T Consensus 773 i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 773 IAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred HHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 87 777777765689999999974 566676653
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.72 E-value=1.2e-18 Score=171.46 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=95.2
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-C-----CeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHH
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-T-----TRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLY 121 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~-----~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~ 121 (606)
+-+++||+++|+||||||||||+++|+|.... + ..|.+.+++.+... ++.++++.|+..+.+. |+.|++.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 46999999999999999999999999995431 1 22355555432100 0112222332222222 2222221
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHH-HHHHHHHHHhh-------CCCEEEEeCCCCCCCH
Q psy10223 122 YAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEH-RRVVIGTQLVK-------DPVLLLLDEPTVNLDP 193 (606)
Q Consensus 122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGer-qRvsIa~aL~~-------~p~llllDEPTsgLD~ 193 (606)
+ ....+++++ +++..+.+++. +|+++++||||++||+
T Consensus 96 ~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~ 140 (231)
T 4a74_A 96 V-----------------------------------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 140 (231)
T ss_dssp E-----------------------------------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHH
T ss_pred E-----------------------------------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhcc
Confidence 1 112333333 33455555555 9999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHHHhCCcEEEEEecCCc---chHHhcCCeEEEEcCCe
Q psy10223 194 L-------S-----TYLIVSMLSSYAKRKSRAVLLTMEKPR---SDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 194 ~-------~-----~~~i~~~L~~l~~~~g~tii~t~h~~~---~~i~~~~D~v~vL~~G~ 239 (606)
. . ..++++.|++++++.|.|||+++|... ..+...+|++++|++|+
T Consensus 141 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 141 EYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 3 1 337888888888777999999998432 23788999999998764
No 98
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.71 E-value=8.1e-19 Score=178.34 Aligned_cols=132 Identities=18% Similarity=0.239 Sum_probs=98.9
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCC-eeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT-RGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~-~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
++|+++| +++|++++|+|||||||||||++|+|..+ +. +|+|.++|.++.. ..+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-~~~~G~I~~~g~~i~~-~~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDPIEY-VFKHKKSIVNQR------------ 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-HHCCCEEEEEESSCCS-CCCCSSSEEEEE------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-CCCCCEEEEcCCccee-ecCCcceeeeHH------------
Confidence 5899999 99999999999999999999999999876 55 7999998876531 111112222221
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
.+|+.. ..+ |++||++|..+|+++++|||| |+.+...+
T Consensus 79 ---------------------------~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~ 116 (261)
T 2eyu_A 79 ---------------------------EVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLETVETA 116 (261)
T ss_dssp ---------------------------EBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH
T ss_pred ---------------------------HhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH
Confidence 122221 112 899999999999999999999 99887654
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
+ +. ++ .|.++++++|.. ++.+.+||++.|..
T Consensus 117 l---~~-~~-~g~~vl~t~H~~--~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 117 L---RA-AE-TGHLVFGTLHTN--TAIDTIHRIVDIFP 147 (261)
T ss_dssp H---HH-HH-TTCEEEEEECCS--SHHHHHHHHHHTSC
T ss_pred H---HH-Hc-cCCEEEEEeCcc--hHHHHHHHHhhhcC
Confidence 4 33 33 588999999975 36788999988864
No 99
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.71 E-value=7.7e-19 Score=175.11 Aligned_cols=163 Identities=10% Similarity=0.055 Sum_probs=99.9
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHH--cCCCCCCeeEEEECCEeCCcc--cccCeEEEEcCCCCCCCCCCHHHHHHHH
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVIS--RRSSGTTRGEIILDGTPMSPQ--LFQTTCGYVNHRTDLIPSLTVEQTLYYA 123 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~--g~~~~~~~G~I~~~G~~~~~~--~~~~~i~yv~q~~~~~~~lTV~e~l~f~ 123 (606)
+-+++||+++|+||||||||||+++|+ |... +..|.+.+++...... ...+.+++++|+....+.+++.+.....
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 103 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSV 103 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-----
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccc
Confidence 479999999999999999999999999 6522 3346666666443211 1123355555543333333333322111
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC-----HHHHHH
Q psy10223 124 AHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD-----PLSTYL 198 (606)
Q Consensus 124 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD-----~~~~~~ 198 (606)
... ...... ......+.++..+......-..+|+++++||||++|| +..+..
T Consensus 104 ~~~----------~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~ 160 (251)
T 2ehv_A 104 VGL----------PSEEKF-------------VLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREV 160 (251)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHH
T ss_pred ccc----------ccccce-------------eccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHH
Confidence 100 000000 0111233445444444444568999999999999998 677777
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchH---------HhcC-CeEEEEc
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDV---------LPFL-DRTAYLC 236 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i---------~~~~-D~v~vL~ 236 (606)
+.++++.+++ .|+|+|+++|+.. ++ ..+| |+|++|+
T Consensus 161 l~~l~~~l~~-~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 161 LLKLNTILLE-MGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHHHHHHH-HCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHHH-CCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 9999988865 4899999999764 44 6788 9999995
No 100
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.71 E-value=1e-20 Score=184.95 Aligned_cols=145 Identities=12% Similarity=0.094 Sum_probs=115.8
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCC--CCCCHHHHHHHHHHcc
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLI--PSLTVEQTLYYAAHLS 127 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~--~~lTV~e~l~f~~~~~ 127 (606)
.++|++++|+||||||||||+|+|+|+.. + .++|++|++.++ +.+|+.+++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~-~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG-E-------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG-G-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC-C-------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 57899999999999999999999999764 2 478999998776 57899888654321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHH----HHHHHHHHHhhCCCEEEEeCCCCC-------CCHHHH
Q psy10223 128 IGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEH----RRVVIGTQLVKDPVLLLLDEPTVN-------LDPLST 196 (606)
Q Consensus 128 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGer----qRvsIa~aL~~~p~llllDEPTsg-------LD~~~~ 196 (606)
.+ .....+++.+.++.+++.+..+.++..+|+||| ||+++|++++.+|+++++||||++ ||+...
T Consensus 61 ~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~ 136 (211)
T 3asz_A 61 HP----DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADAD 136 (211)
T ss_dssp SG----GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHH
T ss_pred Ch----hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHH
Confidence 11 111234577788888887777778889999974 788999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecC
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEK 220 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~ 220 (606)
..+.+.+++..++.|.|++.++|+
T Consensus 137 ~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 137 ERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999988655568888777775
No 101
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.71 E-value=6.7e-20 Score=190.13 Aligned_cols=158 Identities=13% Similarity=0.172 Sum_probs=87.9
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcC-CCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR-SSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~-~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++.+++++++.| +|+||||||||||++.|+|. .. +.+| |.++|.++....-.+.+++++|++.....+|
T Consensus 8 ~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~-~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 8 VHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ----------CEEE------EEEEETTSSHHHHHHHHHC--------------------------CEEEEC---CCEEEE
T ss_pred ECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc-CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 34567999999998 99999999999999999997 54 6678 8888876643222356789999888888999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV-NLDPL 194 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs-gLD~~ 194 (606)
|.||..++.... .. ++.+.+++. +.+..+++++++|||||||+.+|++++ ++++||||+ |||+.
T Consensus 80 v~Dt~g~~~~~~------~~---e~~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~ 144 (301)
T 2qnr_A 80 VVDTPGYGDAIN------CR---DCFKTIISY--IDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPL 144 (301)
T ss_dssp EEEEC--------------------CTTHHHH--HHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHH
T ss_pred hhhhhhhhhhcC------cH---HHHHHHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHH
Confidence 999987754321 00 111111111 123456788999999999999998885 999999998 59998
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
.. +.++++.+..+.++|++.|+.
T Consensus 145 ~~----~~l~~l~~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 145 DV----AFMKAIHNKVNIVPVIAKADT 167 (301)
T ss_dssp HH----HHHHHHTTTSCEEEEECCGGG
T ss_pred HH----HHHHHHHhcCCEEEEEEeCCC
Confidence 73 566666544467777777753
No 102
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.67 E-value=6.6e-19 Score=182.76 Aligned_cols=149 Identities=9% Similarity=0.073 Sum_probs=108.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-------cc--cCeEEEEcCCCCCCCCCCHHHHHHH
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-------LF--QTTCGYVNHRTDLIPSLTVEQTLYY 122 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-------~~--~~~i~yv~q~~~~~~~lTV~e~l~f 122 (606)
+|++++|+||||||||||++.|+|+.+ +.+|+|.++|.+.... .+ +..+++++|+..++|.+||.|++.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 799999999999999999999999987 6789999999886421 11 3468999999999999999999987
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy10223 123 AAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202 (606)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~ 202 (606)
+.... .. ..+++..|+.+..+..+.+ .++||++|||+++.+|+.++| .||+.+..++++.
T Consensus 180 ~~~~~--~d----------~~llDt~G~~~~~~~~~~e---Ls~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~ 239 (304)
T 1rj9_A 180 MKARG--YD----------LLFVDTAGRLHTKHNLMEE---LKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQ 239 (304)
T ss_dssp HHHHT--CS----------EEEECCCCCCTTCHHHHHH---HHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHH
T ss_pred HHhCC--CC----------EEEecCCCCCCchHHHHHH---HHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHH
Confidence 54210 00 0122334444433333444 458999999999999994444 4555555566677
Q ss_pred HHHHHHhCCcEEEEEecCC
Q psy10223 203 LSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 203 L~~l~~~~g~tii~t~h~~ 221 (606)
++++.+..+.|+|+++|.+
T Consensus 240 ~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 240 AKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHcCCcEEEEECCc
Confidence 7777665588888888864
No 103
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.67 E-value=5.6e-18 Score=195.25 Aligned_cols=134 Identities=15% Similarity=0.192 Sum_probs=99.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++.+++|+|+. |++++|+||||||||||||+|+|....+..|.+. .. .+..+++++| +++.+++.|
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------pa--~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------PA--EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------SS--SEEEECCCSE---EEEECCC--
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------eh--hccceeeHHH---hhccCCHHH
Confidence 35799999999 9999999999999999999999975212335431 11 1335666655 556666666
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQL--VKDPVLLLLDEP---TVNLDP 193 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL--~~~p~llllDEP---TsgLD~ 193 (606)
++. .++|+|+++++.+++++ +++|++++|||| |++||.
T Consensus 631 ~l~-------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~ 673 (765)
T 1ewq_A 631 DLA-------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDG 673 (765)
T ss_dssp -----------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHH
T ss_pred HHH-------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCH
Confidence 542 14689999999999999 999999999999 999998
Q ss_pred HHH-HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcC
Q psy10223 194 LST-YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFL 229 (606)
Q Consensus 194 ~~~-~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~ 229 (606)
.+. ..+++.|++ .|.++|+++|+. ++.+++
T Consensus 674 ~~~~~~i~~~L~~----~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 674 VAIATAVAEALHE----RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp HHHHHHHHHHHHH----HTCEEEEECCCH--HHHTCC
T ss_pred HHHHHHHHHHHHh----CCCEEEEEeCCH--HHHHhh
Confidence 875 567777765 378999999974 445554
No 104
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.66 E-value=6.6e-17 Score=158.85 Aligned_cols=168 Identities=15% Similarity=0.095 Sum_probs=110.3
Q ss_pred eeEEeeEE-EEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccC---eEEEEcCCCCCCCCCCH
Q psy10223 41 LILKDISL-EVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQT---TCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 41 ~iL~~vs~-~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~---~i~yv~q~~~~~~~lTV 116 (606)
+.|+++.+ .+++|++++|+||||||||||++.|++... +..|.+.+.+.+......+. .+++..|+.... .+.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 87 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLII 87 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEE
Confidence 46788875 899999999999999999999999997654 33456655443322111100 011111100000 0000
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCC--C
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPV--LLLLDEPTVNL--D 192 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~--llllDEPTsgL--D 192 (606)
++.....++ . .......|.++.++...+.+...+|+ ++++||||+++ |
T Consensus 88 ------------------------~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d 139 (235)
T 2w0m_A 88 ------------------------IDALMKEKE-D---QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK 139 (235)
T ss_dssp ------------------------EECCC-----C---TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC
T ss_pred ------------------------EeccccccC-c---eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC
Confidence 000000000 0 01123459999998888888888999 99999999887 9
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCc-------chHHhcCCeEEEEcCC
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPR-------SDVLPFLDRTAYLCLG 238 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~-------~~i~~~~D~v~vL~~G 238 (606)
+..+.++++.|++++++.|.|+|+++|... ..+.++||+|++|++.
T Consensus 140 ~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 140 PAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 999999999999998878999999998762 3488899999999864
No 105
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.65 E-value=2.2e-16 Score=161.31 Aligned_cols=151 Identities=12% Similarity=0.097 Sum_probs=108.9
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSI 128 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~ 128 (606)
-+++|++++|+||||||||||++.|++... .|.+. .|.+.. .+..+.|+..++. ..+...-...+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~---~g~~~-~g~~~~---~~~~v~~~~~e~~------~~~~~~r~~~~g- 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA---GGPDL-LEVGEL---PTGPVIYLPAEDP------PTAIHHRLHALG- 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH---TCCCT-TCCCCC---CCCCEEEEESSSC------HHHHHHHHHHHH-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh---cCCCc-CCCccC---CCccEEEEECCCC------HHHHHHHHHHHH-
Confidence 488999999999999999999999998542 35442 344322 1346788776652 221111111111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHH---HHHHHHHH
Q psy10223 129 GPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV--NLDPLS---TYLIVSML 203 (606)
Q Consensus 129 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs--gLD~~~---~~~i~~~L 203 (606)
..... .+.+++++.+++.+..++.+..||+||++++ ++++.+|+++++||||+ ++|... ..++++.|
T Consensus 92 -~~~~~----~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L 163 (279)
T 1nlf_A 92 -AHLSA----EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRM 163 (279)
T ss_dssp -TTSCH----HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHH
T ss_pred -hhcCh----hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHH
Confidence 11222 2356678888888888889999999998875 68888999999999999 999854 48889999
Q ss_pred HHHHHhCCcEEEEEecCC
Q psy10223 204 SSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 204 ~~l~~~~g~tii~t~h~~ 221 (606)
++++++.|+|||+++|..
T Consensus 164 ~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 164 EAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHcCCEEEEEecCC
Confidence 999877799999998864
No 106
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.64 E-value=3.2e-17 Score=189.89 Aligned_cols=173 Identities=12% Similarity=0.133 Sum_probs=114.7
Q ss_pred EEEE-EEEeecccccCceeeeeeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe
Q psy10223 13 YLKI-DLQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91 (606)
Q Consensus 13 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~ 91 (606)
.+++ +..|+..... . +++.+++|+++. ++|++++|+||||||||||||+|+|.......| ..
T Consensus 577 ~i~i~~~rHP~le~~-------~---~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~ 639 (800)
T 1wb9_A 577 GIRITEGRHPVVEQV-------L---NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SY 639 (800)
T ss_dssp CEEEEEECCTTHHHH-------C---SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CC
T ss_pred CEEEEeccccEEEcc-------C---CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cc
Confidence 4667 7777654210 0 235689999999 999999999999999999999999863201112 11
Q ss_pred CCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHH
Q psy10223 92 MSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVI 171 (606)
Q Consensus 92 ~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsI 171 (606)
+... +..++++.| +++.+++.|++... .+.+|++++ +++.
T Consensus 640 vpa~--~~~i~~~~~---i~~~~~~~d~l~~~----------------------------------~stf~~e~~-~~~~ 679 (800)
T 1wb9_A 640 VPAQ--KVEIGPIDR---IFTRVGAADDLASG----------------------------------RSTFMVEMT-ETAN 679 (800)
T ss_dssp BSSS--EEEECCCCE---EEEEEC---------------------------------------------CHHHHH-HHHH
T ss_pred cchh--cccceeHHH---HHhhCCHHHHHHhh----------------------------------hhhhhHHHH-HHHH
Confidence 1111 123454443 55666666655321 123455554 4555
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 172 GTQLVKDPVLLLLDEPTVNLDPLSTYLI-VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 172 a~aL~~~p~llllDEPTsgLD~~~~~~i-~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
+...+++|++++||||++|+|+.....+ ..+++.+.++.|.++|+++|+. ++.+++|++..+.+|++....
T Consensus 680 il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEE
T ss_pred HHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEE
Confidence 5567899999999999999999887775 7788888764589999999985 456789988777788776554
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.64 E-value=6.9e-18 Score=178.49 Aligned_cols=163 Identities=17% Similarity=0.151 Sum_probs=101.1
Q ss_pred eEEee-EEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CCCe----eE-EEECCEeCCcccccCeEEEEcCCCCCCCCC
Q psy10223 42 ILKDI-SLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GTTR----GE-IILDGTPMSPQLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 42 iL~~v-s~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~~~----G~-I~~~G~~~~~~~~~~~i~yv~q~~~~~~~l 114 (606)
.|+++ ++.+++|++++|+||||||||||++.|++... .+.+ |. |++++.+.. .++++++++|...+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 45555 68999999999999999999999999999762 1333 66 777765431 12334555555443332
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCC
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV-------KDPVLLLLDEP 187 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~-------~~p~llllDEP 187 (606)
++.||+.+.. . .-|.+++|++.++++++ .+|+++++|||
T Consensus 195 ~v~~ni~~~~------~----------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ 240 (349)
T 1pzn_A 195 EVLKHIYVAR------A----------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL 240 (349)
T ss_dssp HHGGGEEEEE------C----------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETS
T ss_pred HHhhCEEEEe------c----------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCc
Confidence 3333332210 0 01455667777777776 68999999999
Q ss_pred CCCCCHHH------------HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEe
Q psy10223 188 TVNLDPLS------------TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYA 243 (606)
Q Consensus 188 TsgLD~~~------------~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~ 243 (606)
|++||+.. ..++++.|++++++.+.|+|+++|... ....+++.......|+++.+
T Consensus 241 ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~ 307 (349)
T 1pzn_A 241 TSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAH 307 (349)
T ss_dssp STTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCT
T ss_pred hHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEee
Confidence 99999852 467778888888878999999988643 33334444455555554433
No 108
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.62 E-value=2.9e-18 Score=165.97 Aligned_cols=158 Identities=13% Similarity=0.120 Sum_probs=103.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ 131 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~ 131 (606)
||+++|+||||||||||+++|+|..+ .+| |.++|.+... ...++.++|++|+. .... +++ +++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~--~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~~-- 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK--SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGLE-- 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH--HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc--cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hccccc--
Confidence 78999999999999999999999875 468 8888877643 23578899999875 1111 111 011000
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHH
Q psy10223 132 VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRV-VIGT---QLVKDPVLLLLDE--PTVNLDPLSTYLIVSMLSS 205 (606)
Q Consensus 132 ~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRv-sIa~---aL~~~p~llllDE--PTsgLD~~~~~~i~~~L~~ 205 (606)
.+. ....+...++...+|+|||+++ ++++ |++.+|+++++|| |+..+|......+.++|
T Consensus 68 ~~~-------------~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l-- 132 (189)
T 2i3b_A 68 PPP-------------GKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL-- 132 (189)
T ss_dssp CCS-------------SSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH--
T ss_pred CCc-------------cccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH--
Confidence 000 0001123444567999999988 4444 5799999999999 89999987655555444
Q ss_pred HHHhCCcEEE--EEe-cCCcchHHhcCCeEEEEcCCeEEEe
Q psy10223 206 YAKRKSRAVL--LTM-EKPRSDVLPFLDRTAYLCLGDLIYA 243 (606)
Q Consensus 206 l~~~~g~tii--~t~-h~~~~~i~~~~D~v~vL~~G~~v~~ 243 (606)
+....+++ ++. |... ..+.|+|..+.+|+++.-
T Consensus 133 --~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 133 --STPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp --HCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEEC
T ss_pred --hCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEe
Confidence 33333343 222 5432 457788888888888764
No 109
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.58 E-value=3e-17 Score=185.62 Aligned_cols=171 Identities=18% Similarity=0.262 Sum_probs=112.6
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC------cccccCeEEEEcCCCCCCCCCCHHHHHH
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS------PQLFQTTCGYVNHRTDLIPSLTVEQTLY 121 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~------~~~~~~~i~yv~q~~~~~~~lTV~e~l~ 121 (606)
+.++. ++|+|||||||||||++|+|+..+..+|.|+++|.++. ...+++.++|++|+..+++.+||+|++.
T Consensus 43 l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~ 119 (608)
T 3szr_A 43 LALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEIN 119 (608)
T ss_dssp CCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHH
T ss_pred ccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHH
Confidence 44544 99999999999999999999976236899999998852 1246778999999999999999999998
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHH
Q psy10223 122 YAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP------TVNLDPLS 195 (606)
Q Consensus 122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP------TsgLD~~~ 195 (606)
++........ .++| ++++.++.+....|+++++||| |+|||+..
T Consensus 120 ~~~~~~~~~~---------------------------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~ 169 (608)
T 3szr_A 120 KAQNAIAGEG---------------------------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADI 169 (608)
T ss_dssp HHHHHHHCSS---------------------------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSH
T ss_pred HHHHHhcCCc---------------------------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHH
Confidence 7653210000 0111 1222233333458999999999 99999999
Q ss_pred HHHHHHHHHHHHHh-CCcEEEEEecCCc---ch---HHhc-----CCeEEEEcCCeEEEecChhHHHH
Q psy10223 196 TYLIVSMLSSYAKR-KSRAVLLTMEKPR---SD---VLPF-----LDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 196 ~~~i~~~L~~l~~~-~g~tii~t~h~~~---~~---i~~~-----~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.++.++++++.++ .+.++++++|... .+ +.+. ...|.|+.++..+..|+.+++.+
T Consensus 170 ~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 170 GYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp HHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 99999999997543 3556666666432 01 2222 24588999998887777655444
No 110
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.57 E-value=7.1e-15 Score=143.48 Aligned_cols=154 Identities=16% Similarity=0.103 Sum_probs=100.9
Q ss_pred eEEeeE-EEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 42 ILKDIS-LEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 42 iL~~vs-~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
.|+++. +-+++|++++|+||||||||||++.|++ . .. +. +.|+..+.. .+.. .+
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~-~~----------------v~~i~~~~~----~~~~-~~ 62 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SG-KK----------------VAYVDTEGG----FSPE-RL 62 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HC-SE----------------EEEEESSCC----CCHH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cC-Cc----------------EEEEECCCC----CCHH-HH
Confidence 466665 4799999999999999999999999998 2 11 22 233332221 1111 11
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCCCCHH---
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSE--HRRVVIGTQLVKD-PVLLLLDEPTVNLDPL--- 194 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGe--rqRvsIa~aL~~~-p~llllDEPTsgLD~~--- 194 (606)
.-... . ..... +++++.+ .+...|+++ ++++..+++++.+ |+++++||||+++|+.
T Consensus 63 ~~~~~-~--~~~~~-------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~ 124 (220)
T 2cvh_A 63 VQMAE-T--RGLNP-------EEALSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENR 124 (220)
T ss_dssp HHHHH-T--TTCCH-------HHHHHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGS
T ss_pred HHHHH-h--cCCCh-------HHHhhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCch
Confidence 11111 0 01111 1122222 233455554 5688888899986 9999999999999973
Q ss_pred -----HHHHHHHHHHHHHHhCCcEEEEEecCCcc------------hHHhcCCeEEEEcCC
Q psy10223 195 -----STYLIVSMLSSYAKRKSRAVLLTMEKPRS------------DVLPFLDRTAYLCLG 238 (606)
Q Consensus 195 -----~~~~i~~~L~~l~~~~g~tii~t~h~~~~------------~i~~~~D~v~vL~~G 238 (606)
...++++.|++++++.+.++|+++|.... .+...+|++++|++.
T Consensus 125 ~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 125 SGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 33557777888888778999998886432 467899999999864
No 111
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.54 E-value=3.5e-14 Score=135.27 Aligned_cols=93 Identities=11% Similarity=0.140 Sum_probs=74.1
Q ss_pred cccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCC
Q psy10223 155 RRNISELTPSEHRRVVIGTQLVK----DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLD 230 (606)
Q Consensus 155 ~~~v~~LSgGerqRvsIa~aL~~----~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D 230 (606)
++.+..||||||||++||++|+. +|++++|||||+|||+.++..+.+.|+++++ +.++|+++|++ .+.+.+|
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~--~~~~~ad 134 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRD--VMMANAD 134 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH--HHHTTCS
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecH--HHHHhCC
Confidence 45577899999999999999974 4699999999999999999999999999864 35777777874 5788999
Q ss_pred eEEEEc--CCe-EEEecChhHHHH
Q psy10223 231 RTAYLC--LGD-LIYAGPTRLMLE 251 (606)
Q Consensus 231 ~v~vL~--~G~-~v~~G~~~~~~~ 251 (606)
+++.+. +|. -+...+.++..+
T Consensus 135 ~i~~v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 135 KIIGVSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEEEEEETTEEEEEECCHHHHHH
T ss_pred EEEEEEecCCEEEEEEEEcHHHHH
Confidence 998664 564 244455555444
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.54 E-value=1.2e-15 Score=161.49 Aligned_cols=128 Identities=20% Similarity=0.244 Sum_probs=88.7
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSI 128 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~ 128 (606)
...+|++++|+|||||||||||++|+|..++...|.|...+.++. ...+...+++.|.......++..+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~~~~~~~~v~q~~~~~~~~~~~~---------- 187 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FVHESKKCLVNQREVHRDTLGFSE---------- 187 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SCCCCSSSEEEEEEBTTTBSCHHH----------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hhhhccccceeeeeeccccCCHHH----------
Confidence 678999999999999999999999999876222566654433332 122333344555432211122111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q psy10223 129 GPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208 (606)
Q Consensus 129 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~ 208 (606)
+||++|..+|+++++|||| |..+.. .+.+.+.
T Consensus 188 -----------------------------------------~La~aL~~~PdvillDEp~---d~e~~~----~~~~~~~ 219 (356)
T 3jvv_A 188 -----------------------------------------ALRSALREDPDIILVGEMR---DLETIR----LALTAAE 219 (356)
T ss_dssp -----------------------------------------HHHHHTTSCCSEEEESCCC---SHHHHH----HHHHHHH
T ss_pred -----------------------------------------HHHHHhhhCcCEEecCCCC---CHHHHH----HHHHHHh
Confidence 9999999999999999999 666544 3344444
Q ss_pred hCCcEEEEEecCCcchHHhcCCeEEEEcCC
Q psy10223 209 RKSRAVLLTMEKPRSDVLPFLDRTAYLCLG 238 (606)
Q Consensus 209 ~~g~tii~t~h~~~~~i~~~~D~v~vL~~G 238 (606)
.|.++++|+|... ..+.+||++.|..|
T Consensus 220 -~G~~vl~t~H~~~--~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 220 -TGHLVFGTLHTTS--AAKTIDRVVDVFPA 246 (356)
T ss_dssp -TTCEEEEEESCSS--HHHHHHHHHHTSCH
T ss_pred -cCCEEEEEEccCh--HHHHHHHHhhhcCc
Confidence 5899999999764 44889999998665
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.52 E-value=6e-16 Score=167.00 Aligned_cols=151 Identities=12% Similarity=0.156 Sum_probs=89.9
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~ 113 (606)
.++++.+++|+|+.| +|+|+||||||||+++|+|... +..| .+|..... ...+..++++.|++.+++.
T Consensus 20 ~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~-~~~~---~~~~~~~~~~t~~~~~i~~v~q~~~~~~~ 89 (418)
T 2qag_C 20 QVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDL-YSPE---YPGPSHRIKKTVQVEQSKVLIKEGGVQLL 89 (418)
T ss_dssp CTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC-CCCC---CCSCC-----CCEEEEEECC------CEE
T ss_pred eECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCC-CCCC---CCCcccCCccceeeeeEEEEEecCCcccc
Confidence 344567999999998 9999999999999999999865 2223 12222211 1123468899999888889
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCC---EEEEeCCC-C
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPV---LLLLDEPT-V 189 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~---llllDEPT-s 189 (606)
+||.||+.+..... .......+.+.++ ..++.+++||++||++++.+|+ ++++|||| .
T Consensus 90 Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~ 151 (418)
T 2qag_C 90 LTIVDTPGFGDAVD------NSNCWQPVIDYID------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH 151 (418)
T ss_dssp EEEEECC-----------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CC
T ss_pred eeeeechhhhhhcc------chhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCccc
Confidence 99999988764321 0011111222221 1344567789999999999999 99999999 6
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEK 220 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~ 220 (606)
|||+... +.++.+.. +..+|++++.
T Consensus 152 ~L~~~d~----~~lk~L~~--~v~iIlVinK 176 (418)
T 2qag_C 152 GLKPLDI----EFMKRLHE--KVNIIPLIAK 176 (418)
T ss_dssp SCCHHHH----HHHHHHTT--TSEEEEEEES
T ss_pred CCCHHHH----HHHHHHhc--cCcEEEEEEc
Confidence 9999873 44455542 5667766665
No 114
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.51 E-value=1.9e-17 Score=158.74 Aligned_cols=141 Identities=14% Similarity=0.084 Sum_probs=93.2
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-cccCeEEEEcCCCCCCCCCCHHHHHHHHHHcc
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLS 127 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~ 127 (606)
.+++|++++|+||||||||||+|+|+|. +..|.|.++|.++... ..+..++|++|+.. +.+||.+++.+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 3789999999999999999999999997 3469999998764221 11233566666543 4578888887654311
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCchhh--cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy10223 128 IGPQVSRYVRNARIRQVLADLALSNVA--RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205 (606)
Q Consensus 128 ~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~ 205 (606)
...+. ...++.++..+++.... +..+..+|+|++||+.++|++..+|+++ +|+.....+.+.++.
T Consensus 80 ~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 80 AKEGY-----FVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHTSC-----EEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred hccCC-----eEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 00000 00011111112222222 4456789999999999999999999876 688888777777766
Q ss_pred HH
Q psy10223 206 YA 207 (606)
Q Consensus 206 l~ 207 (606)
+.
T Consensus 147 l~ 148 (191)
T 1zp6_A 147 LG 148 (191)
T ss_dssp CG
T ss_pred cC
Confidence 54
No 115
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.51 E-value=4.7e-17 Score=163.20 Aligned_cols=147 Identities=17% Similarity=0.194 Sum_probs=104.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHH---cCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSI 128 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~---g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~ 128 (606)
++++++|+||||||||||+|+|+ |... +..|+|.++|.+... .....+.+++|+..++|..++.+++........
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~-~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH-LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC-EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE-ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999 9876 677888877654321 122234455677778888999999987543100
Q ss_pred -----CCCCCHHHHHHHHHHHHH--HcC------------CchhhcccCCCCCHHHHHHHHHHHHH-hhCCCEEEEe---
Q psy10223 129 -----GPQVSRYVRNARIRQVLA--DLA------------LSNVARRNISELTPSEHRRVVIGTQL-VKDPVLLLLD--- 185 (606)
Q Consensus 129 -----~~~~~~~~~~~~v~~~l~--~lg------------L~~~~~~~v~~LSgGerqRvsIa~aL-~~~p~llllD--- 185 (606)
..+.++.. .+++.+.+ .++ +....++++..||| |+ +++ +.+|+++++|
T Consensus 104 ~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 104 GQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp TSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred CCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 00111111 12222221 223 34456778889999 66 677 9999999999
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHHh
Q psy10223 186 -EPTVNLDPLSTYLIVSMLSSYAKR 209 (606)
Q Consensus 186 -EPTsgLD~~~~~~i~~~L~~l~~~ 209 (606)
|||+|||..+...+.+.|+++.++
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999988654
No 116
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.51 E-value=6.7e-17 Score=156.78 Aligned_cols=159 Identities=13% Similarity=0.087 Sum_probs=97.9
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC-----CCCCeeEEEECCEeCCcccccCeEEEEcCCCCC----C
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS-----SGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDL----I 111 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~-----~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~----~ 111 (606)
.+|++ +.+++|+.++|+|+||||||||++.|+|.. . +..|.+...+.-. +...+-.+ +.+.+ .
T Consensus 16 ~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~-~~~G~~~~~~~~~----~~~~~~l~-Dt~G~~~~~~ 87 (210)
T 1pui_A 16 PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS-KTPGRTQLINLFE----VADGKRLV-DLPGYGYAEV 87 (210)
T ss_dssp SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEE----EETTEEEE-ECCCCC----
T ss_pred CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcccccc-CCCccceeeEEEE----ecCCEEEE-ECcCCccccc
Confidence 46777 789999999999999999999999999976 3 4556554321100 00011111 11110 0
Q ss_pred CCCC---HHHHHHHHHHc-c----------CCCCCCHHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHH-HHHHHHH
Q psy10223 112 PSLT---VEQTLYYAAHL-S----------IGPQVSRYVRNARIRQVLADLALSNV-ARRNISELTPSEHRR-VVIGTQL 175 (606)
Q Consensus 112 ~~lT---V~e~l~f~~~~-~----------~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqR-vsIa~aL 175 (606)
+.-. .+..+...... + .....+. ..+++.++++..++... ...++..+|+||||| +..++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~ 165 (210)
T 1pui_A 88 PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREA 165 (210)
T ss_dssp --CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHH
Confidence 1100 11122221110 0 0001122 22345566777777654 366788899999999 8999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q psy10223 176 VKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209 (606)
Q Consensus 176 ~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~ 209 (606)
+.+|+++++|||||++|.....++.+.|.++.++
T Consensus 166 ~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 166 VLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999988654
No 117
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.50 E-value=5.2e-16 Score=153.53 Aligned_cols=151 Identities=13% Similarity=0.118 Sum_probs=99.9
Q ss_pred eEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCH----HHHH
Q psy10223 46 ISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTV----EQTL 120 (606)
Q Consensus 46 vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV----~e~l 120 (606)
-.-..++|++++|+||||||||||+|+|+|..++ ...|.|.+.+.+.... .++.++|++|++..|+.+++ .|++
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 3446899999999999999999999999998863 3679999988765432 34568899998665555544 2332
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
.+..... +.| +++ ++.++..+++++|| ||+.++.++.
T Consensus 88 ~~~~~~y--------------------------------g~~---~~~---v~~~l~~G~illLD-----LD~~~~~~i~ 124 (219)
T 1s96_A 88 EVFGNYY--------------------------------GTS---REA---IEQVLATGVDVFLD-----IDWQGAQQIR 124 (219)
T ss_dssp EETTEEE--------------------------------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHHHH
T ss_pred HHHhccC--------------------------------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHHHH
Confidence 2211100 001 111 23334457999999 9999999999
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHHH
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRS 255 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~~ 255 (606)
+.+. .+.+|++++|++ +++.+ |+ +.+| .++++++...+..
T Consensus 125 ~~l~-----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~~~e~i~~rl~~ 164 (219)
T 1s96_A 125 QKMP-----HARSIFILPPSK-IELDR---RL--RGRG----QDSEEVIAKRMAQ 164 (219)
T ss_dssp HHCT-----TCEEEEEECSSH-HHHHH---HH--HTTS----CSCHHHHHHHHHH
T ss_pred HHcc-----CCEEEEEECCCH-HHHHH---HH--HHcC----CCCHHHHHHHHHH
Confidence 8875 378999998864 34433 43 6777 5788887766543
No 118
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.49 E-value=1.7e-18 Score=166.28 Aligned_cols=173 Identities=12% Similarity=0.080 Sum_probs=110.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV 132 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~ 132 (606)
|++++|+||||||||||+|+|++. .+|.+.++|.++... ...++++|.....+.+|+.+++.+.+........
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH----SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc----cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999973 458898888654211 2345566655444556788887765432100000
Q ss_pred CHHHHHHHHHHHHHHcCCchhhcccCCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy10223 133 SRYVRNARIRQVLADLALSNVARRNISEL--TPSEHRRVVIGT------QLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204 (606)
Q Consensus 133 ~~~~~~~~v~~~l~~lgL~~~~~~~v~~L--SgGerqRvsIa~------aL~~~p~llllDEPTsgLD~~~~~~i~~~L~ 204 (606)
..+++.+. .....+..+.+ |+|++||+.++. +++.+|+...+|+ +||+..... .+.++
T Consensus 75 ---------~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~ 140 (189)
T 2bdt_A 75 ---------DVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFE 140 (189)
T ss_dssp ---------EEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHH
T ss_pred ---------cEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHh
Confidence 00011010 01001112233 888888888888 8999999888884 899988888 88888
Q ss_pred HHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 205 SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 205 ~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.+.+ .+.++|.++|...+++.+.||+|+ ++|+++..|+++-+
T Consensus 141 ~~~~-~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 141 SKGI-DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HTTC-CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred hcCC-CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 7753 467888888862457899999998 99999999987643
No 119
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.45 E-value=3.4e-14 Score=150.04 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=91.1
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEEC-CEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILD-GTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~-G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
-+++++.. .+|++++|+||||||||||+|+|+|....+.+|+|.++ |.... ...+..+++++|+..++++.||+|+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~- 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF- 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------------CCCEEEECTTSCEEEECHHHHTC-
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh-
Confidence 35566654 48999999999999999999999998752567999987 65543 2345679999999889999999883
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQL 175 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL 175 (606)
. + ...+..+..+++.++++.+++.+..+..+.++| ||+||++||+++
T Consensus 282 --~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 --G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp --C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred --h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 1 1 134555666778889999999999999999999 999999999864
No 120
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.45 E-value=5e-15 Score=159.47 Aligned_cols=165 Identities=13% Similarity=0.151 Sum_probs=110.0
Q ss_pred cceeeEEeeEEEEeCCeE--EEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEV--LAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~--~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+ |+++|+++++|++ ++|+||||||||||+|+|+|..- .|.-. .. ......++.++|++|++.+++.+|
T Consensus 26 ~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l---~g~~~-~~--~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 26 DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF---EGEPA-TH--TQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc---cCCcC-CC--CCccceEeeEEEEeecCccccccc
Confidence 3445 9999999999999 99999999999999999999841 12111 00 111223457999999999888999
Q ss_pred HHHHHHHHHHccCCCCCCHH--------HHHHHHHHHHHHc-CCch----hhcccC-----------CCCCHHHHHHHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRY--------VRNARIRQVLADL-ALSN----VARRNI-----------SELTPSEHRRVVI 171 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~--------~~~~~v~~~l~~l-gL~~----~~~~~v-----------~~LSgGerqRvsI 171 (606)
|.||+.++.. .... ....+.++.|... ++.. ..|.++ ++|+-.+ +.|
T Consensus 99 v~D~~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---iei 169 (427)
T 2qag_B 99 IVSTVGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVT 169 (427)
T ss_dssp EEEEECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHH
T ss_pred hhhhhhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHH
Confidence 9999876432 1111 1233455566554 4431 123321 3677666 789
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHhCCcEEEEEec
Q psy10223 172 GTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS-YAKRKSRAVLLTME 219 (606)
Q Consensus 172 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~-l~~~~g~tii~t~h 219 (606)
+++|..+++++++|||+..|.+.....+.+.+++ +. ..|..|+.++.
T Consensus 170 lk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi~I~~is~ 217 (427)
T 2qag_B 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGVQIYQFPT 217 (427)
T ss_dssp HHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBCCCCCCC-
T ss_pred HHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCCcEEecCC
Confidence 9999999999999999999999999999999997 54 46777776543
No 121
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.44 E-value=1.1e-17 Score=178.01 Aligned_cols=169 Identities=13% Similarity=0.067 Sum_probs=100.8
Q ss_pred eEEeeEEEEeC--CeEEEEEcCCCccHHHHHHHHHcCCCCCCe----eEEEECCEeCCcccccCeEEEEcCCCCCCCCCC
Q psy10223 42 ILKDISLEVRP--GEVLAVLGSKGSGKRALLEVISRRSSGTTR----GEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 42 iL~~vs~~v~~--Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~----G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lT 115 (606)
+.+.|++.|++ |+.++|+||||||||||+|+|+|+.+ +.+ |+|.+++... ..+..++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~-~~~~~e~G~i~i~~~~~-------------~~~~~~~~~~ 222 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN-TTSAWEYGREFVFEKLG-------------GDEQAMQYSD 222 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT-CEEECCTTHHHHHHSSS-------------SCTTSSCTTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC-CCcchhhHHHHHHhhcC-------------CCcccCChhH
Confidence 45679999999 99999999999999999999999987 666 6655421100 0000111112
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh-hCCCEEEEeC---CC---
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV-KDPVLLLLDE---PT--- 188 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~-~~p~llllDE---PT--- 188 (606)
. +++.+.... .......+.+-+. ++..+..++.+..+|+|++||..+++++. .+|++++||| |+
T Consensus 223 ~-~~I~~~~q~-------~~~~~~t~~~nl~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~ 293 (365)
T 1lw7_A 223 Y-PQMALGHQR-------YIDYAVRHSHKIA-FIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDD 293 (365)
T ss_dssp H-HHHHHHHHH-------HHHHHHHHCSSEE-EESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC----
T ss_pred H-HHHHHHHHH-------HHHHHHhccCCEE-EEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccC
Confidence 2 223322110 0000000000000 01112223334456677788888888775 5999999999 65
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE
Q psy10223 189 ---VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL 235 (606)
Q Consensus 189 ---sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL 235 (606)
.++|+..+..+.+.|+++.++.+.+++++.| | .+..+++|++.++
T Consensus 294 g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde-~-~~~~r~~~~i~~i 341 (365)
T 1lw7_A 294 GLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIES-P-SYLDRYNQVKAVI 341 (365)
T ss_dssp -------CCSHHHHHHHHHHHHHGGGCCCEEEEC-S-SHHHHHHHHHHHH
T ss_pred CCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCC-C-CHHHHHHHHHHHH
Confidence 5899999999999999887655778888765 4 2555666655444
No 122
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.43 E-value=8.5e-13 Score=130.66 Aligned_cols=153 Identities=17% Similarity=0.188 Sum_probs=87.8
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHc--CCCC----CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHH
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISR--RSSG----TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLY 121 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g--~~~~----~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~ 121 (606)
+-+++|++++|+||||||||||++.|++ ..++ ...|.+.+++... + ...+-..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~-----------------~----~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT-----------------F----RPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC-----------------C----CHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC-----------------c----CHHHHHH
Confidence 5689999999999999999999999998 3431 1235555544321 0 1111111
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHH-HHHHHHHh--hCCCEEEEeCCCCCCCHH----
Q psy10223 122 YAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRR-VVIGTQLV--KDPVLLLLDEPTVNLDPL---- 194 (606)
Q Consensus 122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqR-vsIa~aL~--~~p~llllDEPTsgLD~~---- 194 (606)
...++ .... +++++.+. .....+..+..+ +.-+..++ .+|+++++|||++.+|+.
T Consensus 78 ~~~~~----g~~~-------~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~ 139 (243)
T 1n0w_A 78 VAERY----GLSG-------SDVLDNVA-------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR 139 (243)
T ss_dssp HHHHT----TCCH-------HHHHHTEE-------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC------
T ss_pred HHHHc----CCCH-------HHHhhCeE-------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCC
Confidence 11111 0111 01111111 112344444332 22233333 589999999999999975
Q ss_pred ---H-----HHHHHHHHHHHHHhCCcEEEEEecCCcch------------------HHhcCCeEEEEcCCe
Q psy10223 195 ---S-----TYLIVSMLSSYAKRKSRAVLLTMEKPRSD------------------VLPFLDRTAYLCLGD 239 (606)
Q Consensus 195 ---~-----~~~i~~~L~~l~~~~g~tii~t~h~~~~~------------------i~~~~D~v~vL~~G~ 239 (606)
. ..++++.|++++++.|.|||+++|...+. +...+|.+++|++|+
T Consensus 140 ~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 140 GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 3 45677778888877799999998843211 233799999998753
No 123
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.43 E-value=1.3e-14 Score=154.03 Aligned_cols=137 Identities=15% Similarity=0.157 Sum_probs=100.4
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeC-CcccccCeEEEEc-CCCCCCCCCCHHHHH
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM-SPQLFQTTCGYVN-HRTDLIPSLTVEQTL 120 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~-~~~~~~~~i~yv~-q~~~~~~~lTV~e~l 120 (606)
++++|+.+++|++++|+||||||||||+|+|+|..+ +.+|.|.++|..- .....++.+++++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~---------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE---------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-TTSCEEEEESSSCCCCTTCSSEEEEECC---------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-CCceEEEECCccccCccccCCEEEEeecCcccc----------
Confidence 399999999999999999999999999999999987 6889999998531 1122567789988 55421
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
+++++...|..|+.++..+|+.+++||++. .+..
T Consensus 234 ---------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~ 267 (361)
T 2gza_A 234 ---------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAY 267 (361)
T ss_dssp --------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHH
T ss_pred ---------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHH
Confidence 012223456667777778999999999985 2445
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
+.|+.+. .+..|++.++|.. +....+||+..+.+|.
T Consensus 268 ~~l~~l~-~g~~~~l~t~H~~--~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 268 DFINVAA-SGHGGSITSCHAG--SCELTFERLALMVLQN 303 (361)
T ss_dssp HHHHHHH-TTCCSCEEEEECS--SHHHHHHHHHHHHTTS
T ss_pred HHHHHHh-cCCCeEEEEECCC--CHHHHHHHHHHHHhcc
Confidence 5666664 3456778888864 4788899999888764
No 124
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.42 E-value=1.6e-14 Score=154.04 Aligned_cols=132 Identities=19% Similarity=0.237 Sum_probs=97.2
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCC-eeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT-RGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~-~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
.+|++++ +++|++++|+|||||||||||++|+|..+ +. +|+|...|.++. ...+..+++++|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~-~~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH-HHSCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC-cCCCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 3567766 79999999999999999999999999876 44 799977665553 23456677777741
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+|+. +..+ +.+|+++|..+|+++++|||+ |+.+...
T Consensus 191 ----------------------------~g~~------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~- 226 (372)
T 2ewv_A 191 ----------------------------VGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVET- 226 (372)
T ss_dssp ----------------------------BTTT------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHH-
T ss_pred ----------------------------cCCC------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHH-
Confidence 1111 1223 469999999999999999999 7766443
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
.++. + ..|.+++.|+|.. ++.+.+||++.|..
T Consensus 227 --~l~~-~-~~g~~vi~t~H~~--~~~~~~~rl~~l~~ 258 (372)
T 2ewv_A 227 --ALRA-A-ETGHLVFGTLHTN--TAIDTIHRIVDIFP 258 (372)
T ss_dssp --HHHH-H-TTTCEEEECCCCC--SHHHHHHHHHHTSC
T ss_pred --HHHH-H-hcCCEEEEEECcc--hHHHHHHHHHHhcC
Confidence 3443 3 3578888888863 48888999877743
No 125
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.42 E-value=3e-17 Score=171.42 Aligned_cols=163 Identities=13% Similarity=0.066 Sum_probs=103.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC-------CCCeeEEEECCEeCCcc------------------cccCeEEEE---
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS-------GTTRGEIILDGTPMSPQ------------------LFQTTCGYV--- 104 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~-------~~~~G~I~~~G~~~~~~------------------~~~~~i~yv--- 104 (606)
=++++|+|+||||||||||.|.|..+ .+..|+|.++|.++... .+++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 36899999999999999999999862 15779999999876421 122335555
Q ss_pred cCCCCCCCCCCHHHHHHHHHHccCCCCC---CHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCE
Q psy10223 105 NHRTDLIPSLTVEQTLYYAAHLSIGPQV---SRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVL 181 (606)
Q Consensus 105 ~q~~~~~~~lTV~e~l~f~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~l 181 (606)
+|+..+++..+|.|+..++......... +......++..++..+++.+..++.. ++|+|||||+..+++++.+|++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl 162 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDV 162 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTT
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECccc
Confidence 4555555566666665432100000000 00000001112223345544444443 7999999999998999999998
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCC
Q psy10223 182 LLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLD 230 (606)
Q Consensus 182 lllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D 230 (606)
+ ||| .++.+.|+++. .+.+|++++|.+. ++..++|
T Consensus 163 ~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 163 A--GEA---------EKLHERLARIN--ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp C--SCT---------HHHHHHHHHHC--SSSCEEECCSSCC-CGGGGSC
T ss_pred C--CHH---------HHHHHHHHHhC--CCCeEEEecccCC-CHHHHhC
Confidence 7 998 67888888874 4789999999764 4444444
No 126
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.39 E-value=7e-15 Score=158.59 Aligned_cols=169 Identities=19% Similarity=0.210 Sum_probs=103.6
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHH
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYY 122 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f 122 (606)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.+ .....++++.+++. ..+++.|+.-+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-------cccCcccc--eecceeeEEEecCc--ceEEEEecccc
Confidence 479999999999999999999999999999998742 12232221 12223444444320 01111111100
Q ss_pred H--HHccCCCCCCHHHH--HHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 123 A--AHLSIGPQVSRYVR--NARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 123 ~--~~~~~~~~~~~~~~--~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
. +.. ...+..... .++++.++..++++ ++.+..+|+|++||+.+|++|+.+|.++++ +++|...+ +
T Consensus 216 i~~a~~--~~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~ 285 (416)
T 1udx_A 216 IEGASE--GKGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-E 285 (416)
T ss_dssp CCCGGG--SCCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-H
T ss_pred ccchhh--hhhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-H
Confidence 0 000 011221111 11122233334444 566778999999999999999999999999 99999877 5
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeE
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRT 232 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v 232 (606)
.++.+++..+..+.+++.++.+..+.+.++++.+
T Consensus 286 ~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 286 AVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 5555655555557777766655555666665543
No 127
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.37 E-value=9.8e-15 Score=159.29 Aligned_cols=155 Identities=12% Similarity=0.140 Sum_probs=103.9
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-------c--ccCeEEEEcCCCCCCCC
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-------L--FQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-------~--~~~~i~yv~q~~~~~~~ 113 (606)
-+++|+.+++|++++|+|+||||||||+++|+|++. +.+|+|.++|.+.... . .|+.++|++|+..+++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 468999999999999999999999999999999986 5679999987665321 1 25579999999888899
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh-hCCC-EEEEeCCCCCC
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV-KDPV-LLLLDEPTVNL 191 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~-~~p~-llllDEPTsgL 191 (606)
+||++++.++..... .+ -+++..|+.+.......+| +|++.+++++. ..|+ +++..++|+|.
T Consensus 362 ~tV~e~l~~a~~~~~--Dv----------VLIDTaGrl~~~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 362 SVIFDAIQAAKARNI--DV----------LIADTAGRLQNKSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp HHHHHHHHHHHHTTC--SE----------EEECCCCSCCCHHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred HHHHHHHHHHHhcCC--CE----------EEEeCCCccchhhhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 999999998754210 00 0111122211111111122 47888888764 4563 55555588886
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEK 220 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~ 220 (606)
|.. +.++.+.+..+.|.++.+|-
T Consensus 426 ~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 426 NAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp HHH------HHHHHHHHHTCCSEEEEECG
T ss_pred HHH------HHHHHHHhhcCCCEEEEEcC
Confidence 554 33444444457777777773
No 128
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.37 E-value=1.1e-14 Score=136.64 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=65.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
.+.+++++|+++++||+++|+||||||||||+|+|+|.. +.+|+|.++|.++......+. +++|+..++ .+||.|
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~~g~~i~~~~~~~~--~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI--GHQGNVKSPTYTLVEEYNIAG--KMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT--TCCSCCCCCTTTCEEEEEETT--EEEEEEECT-TCSCTT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC--CCCCeEEECCEeeeeeccCCC--cceeccccc-cCCcHH
Confidence 457899999999999999999999999999999999988 468999999987742111122 788988888 899999
Q ss_pred HHHH
Q psy10223 119 TLYY 122 (606)
Q Consensus 119 ~l~f 122 (606)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9854
No 129
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.34 E-value=5.8e-14 Score=147.01 Aligned_cols=145 Identities=13% Similarity=0.133 Sum_probs=101.7
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-------cc--cCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-------LF--QTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-------~~--~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
.++|++++|+||||||||||++.|+|..+ +.+|+|.+.|.+.... .+ +..+.+++|...+.|.+||+|++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~-~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK-NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 36899999999999999999999999987 6789999999886421 11 23466999999999999999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
.++..... .. -+++..|+.+..+....+|| .|++++..++.++++|.+|. .+++
T Consensus 205 ~~~~~~~~--d~----------vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-------~~~~ 258 (328)
T 3e70_C 205 QHAKARGI--DV----------VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-------NAIV 258 (328)
T ss_dssp HHHHHHTC--SE----------EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-------THHH
T ss_pred HHHHhccc--hh----------hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-------HHHH
Confidence 87643110 00 01222343333333333333 38899988888888885554 3555
Q ss_pred HHHHHHHHhCCcEEEEEecCC
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~ 221 (606)
+.++.+.+..+.|+|+.+|.+
T Consensus 259 ~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 259 EQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHHhcCCCEEEEeCcC
Confidence 666777666788888888853
No 130
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.34 E-value=3.5e-12 Score=135.69 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=67.8
Q ss_pred ccCCCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc
Q psy10223 156 RNISELTPSEHRRV------VIGTQLVKD-PVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF 228 (606)
Q Consensus 156 ~~v~~LSgGerqRv------sIa~aL~~~-p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~ 228 (606)
.++..||||||||+ ++|++++.+ |++++|||||+|||+..+..+.+.|+++.+ +.+||+++|++ ++...
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~th~~--~~~~~ 351 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS--IPQMIIITHHR--ELEDV 351 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS--CSEEEEEESCG--GGGGG
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc--CCeEEEEEChH--HHHhh
Confidence 45678999999988 567888999 999999999999999999999999998742 46888999985 46889
Q ss_pred CCeEEEEcC
Q psy10223 229 LDRTAYLCL 237 (606)
Q Consensus 229 ~D~v~vL~~ 237 (606)
+|++++|++
T Consensus 352 ~d~~~~l~k 360 (371)
T 3auy_A 352 ADVIINVKK 360 (371)
T ss_dssp CSEEEEEEE
T ss_pred CCEEEEEEe
Confidence 999999973
No 131
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.34 E-value=1.5e-15 Score=159.92 Aligned_cols=163 Identities=9% Similarity=0.066 Sum_probs=109.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-------cccCeEEEEcCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-------LFQTTCGYVNHRTDLI 111 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-------~~~~~i~yv~q~~~~~ 111 (606)
.+.+|+++|+++++|++++|+||||||||||+++|+|... +.+|+|.+.|.++... ..+..+++++|++.++
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-hCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 3568999999999999999999999999999999999876 5779999999876421 2355789999998776
Q ss_pred CCCC------------HHHHHHHHH---------------------H--cc-----CCCCCCHHHHH---HHHHHHHHHc
Q psy10223 112 PSLT------------VEQTLYYAA---------------------H--LS-----IGPQVSRYVRN---ARIRQVLADL 148 (606)
Q Consensus 112 ~~lT------------V~e~l~f~~---------------------~--~~-----~~~~~~~~~~~---~~v~~~l~~l 148 (606)
+..+ +.|.+...- . .. .... ...+.+ +.+.+....+
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~-~~~~~~~i~~~i~~~~~iv 198 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG-AGDELQGIKKGIFELADMI 198 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC-C------CCTTHHHHCSEE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC-CcccHHHHHHHHhccccEE
Confidence 5322 233321100 0 00 0000 000000 0111111122
Q ss_pred CCchhhcc-cCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q psy10223 149 ALSNVARR-NISELTPSEHRRVVIGTQLVK------DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208 (606)
Q Consensus 149 gL~~~~~~-~v~~LSgGerqRvsIa~aL~~------~p~llllDEPTsgLD~~~~~~i~~~L~~l~~ 208 (606)
.+ +..|. ....+|+|++|++..+.+++. +|++++ ||++|.....++++.|.++.+
T Consensus 199 vl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 199 AV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 22 12232 234679999999999999987 688887 999999999999999988754
No 132
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.33 E-value=4.5e-14 Score=146.29 Aligned_cols=121 Identities=10% Similarity=0.128 Sum_probs=85.7
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEE---CCEeCCcc--ccc-CeEEEEcCCCCCC-----CCCCHHH
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL---DGTPMSPQ--LFQ-TTCGYVNHRTDLI-----PSLTVEQ 118 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~---~G~~~~~~--~~~-~~i~yv~q~~~~~-----~~lTV~e 118 (606)
+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|++.+.. ..+ +.++|++|.+.+. +.+|+ |
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~-~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE-LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC-CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh-CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 3579999999999999999999999 776 78899999 88876532 122 3589999998553 78999 8
Q ss_pred HH--HHH----HHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHH
Q psy10223 119 TL--YYA----AHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGT 173 (606)
Q Consensus 119 ~l--~f~----~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~ 173 (606)
++ .|+ ..++........+...+++++++.++|.+ ..+++++.|||.++|++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 87 443 10111110111223457899999999986 788999999999999999987
No 133
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.32 E-value=4.3e-13 Score=127.48 Aligned_cols=114 Identities=16% Similarity=0.214 Sum_probs=75.8
Q ss_pred EEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHc
Q psy10223 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHL 126 (606)
Q Consensus 47 s~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~ 126 (606)
++.+++|+.++|.||||+|||||+++|++... +.+|. .+.| +++.+.+...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g~---------------~~~~----------~~~~~~~~~~--- 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-EKKGI---------------RGYF----------FDTKDLIFRL--- 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-HHSCC---------------CCCE----------EEHHHHHHHH---
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH-HHcCC---------------eEEE----------EEHHHHHHHH---
Confidence 35567899999999999999999999998763 22221 0111 2233322111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHH
Q psy10223 127 SIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV-NLDPLSTYLIVSMLSS 205 (606)
Q Consensus 127 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs-gLD~~~~~~i~~~L~~ 205 (606)
......-.. . -....+.+|++|++|||++ ++|+..+..+.+++..
T Consensus 83 ---------------~~~~~~~~~-----------~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~ 128 (180)
T 3ec2_A 83 ---------------KHLMDEGKD-----------T--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITY 128 (180)
T ss_dssp ---------------HHHHHHTCC-----------S--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHH
T ss_pred ---------------HHHhcCchH-----------H--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 111110000 0 1122245999999999995 9999999999999988
Q ss_pred HHHhCCcEEEEEecCCcch
Q psy10223 206 YAKRKSRAVLLTMEKPRSD 224 (606)
Q Consensus 206 l~~~~g~tii~t~h~~~~~ 224 (606)
..+ .|+++|+|+|++.++
T Consensus 129 ~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 129 RYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHH-TTCEEEEECCCCSCC
T ss_pred HHH-cCCCEEEEcCCChhH
Confidence 764 578999999988765
No 134
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.32 E-value=5.8e-15 Score=140.45 Aligned_cols=136 Identities=11% Similarity=0.101 Sum_probs=84.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCC---eeEEEECCEeCC------ccccc-CeEE----EEcCCCCCCCCCCHHHH
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSSGTT---RGEIILDGTPMS------PQLFQ-TTCG----YVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~~~~---~G~I~~~G~~~~------~~~~~-~~i~----yv~q~~~~~~~lTV~e~ 119 (606)
++++|+|+||||||||++.|+|.+. +. .|.|.++|.++. ...+| +.++ +++|+..++ +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec-
Confidence 5899999999999999999999876 44 799999998742 12344 3455 788876554 100
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHH-cCCchhhccc-CCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCCCCC
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLAD-LALSNVARRN-ISELTPSEHRRVVIGTQLVKDPVLL-------LLDEPTVN 190 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~-v~~LSgGerqRvsIa~aL~~~p~ll-------llDEPTsg 190 (606)
. .. +....+.++++. +. . .|+. +.+||||||||++|||+++.+|++. .-|.|..+
T Consensus 77 ---------~---~~-~~~a~l~~~i~~~l~--g-~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~ 140 (171)
T 2f1r_A 77 ---------V---SE-EEGNDLDWIYERYLS--D-YDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDG 140 (171)
T ss_dssp ---------C---CH-HHHTCHHHHHHHHTT--T-CSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSS
T ss_pred ---------C---Ch-hhhhCHHHHHHhhCC--C-CCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCccc
Confidence 0 01 111134556655 42 1 2332 3469999999999999999999873 23454322
Q ss_pred ---CCHHHHHHHHHHHHHHHHhCC
Q psy10223 191 ---LDPLSTYLIVSMLSSYAKRKS 211 (606)
Q Consensus 191 ---LD~~~~~~i~~~L~~l~~~~g 211 (606)
+|......+.+.+.+..+++|
T Consensus 141 ~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 141 HKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp SCEECTTCHHHHHHHHHHHHTC--
T ss_pred CcccCcccHHHHHHHHHHHHhccC
Confidence 344456677888877766654
No 135
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.29 E-value=1.6e-12 Score=120.63 Aligned_cols=98 Identities=20% Similarity=0.370 Sum_probs=71.1
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCee--EEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG--EIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G--~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
.+|+++ +|+.++|+||||||||||+++|++... + +| .+.+++.+.. ..
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~-~-~g~~~~~~~~~~~~-----------------~~------ 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL-E-AGKNAAYIDAASMP-----------------LT------ 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH-T-TTCCEEEEETTTSC-----------------CC------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH-h-cCCcEEEEcHHHhh-----------------HH------
Confidence 456666 899999999999999999999999764 2 34 3333322111 00
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
+++.+|+++++|||++ +|...+..
T Consensus 79 -------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~ 102 (149)
T 2kjq_A 79 -------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQAL 102 (149)
T ss_dssp -------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHH
T ss_pred -------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHH
Confidence 2356899999999998 66555888
Q ss_pred HHHHHHHHHHhCCcE-EEEEecCCcchH
Q psy10223 199 IVSMLSSYAKRKSRA-VLLTMEKPRSDV 225 (606)
Q Consensus 199 i~~~L~~l~~~~g~t-ii~t~h~~~~~i 225 (606)
+.+++..+.++ |++ +|+++|.+.+++
T Consensus 103 l~~li~~~~~~-g~~~iiits~~~p~~l 129 (149)
T 2kjq_A 103 LFSIFNRFRNS-GKGFLLLGSEYTPQQL 129 (149)
T ss_dssp HHHHHHHHHHH-TCCEEEEEESSCTTTS
T ss_pred HHHHHHHHHHc-CCcEEEEECCCCHHHc
Confidence 99999988764 666 888888665443
No 136
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.26 E-value=2.1e-11 Score=130.83 Aligned_cols=63 Identities=13% Similarity=-0.027 Sum_probs=48.8
Q ss_pred hCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHHhCCcEEEEEecCC--c----------------chHH
Q psy10223 177 KDPVLLLLDEPTVNLDPLST------------YLIVSMLSSYAKRKSRAVLLTMEKP--R----------------SDVL 226 (606)
Q Consensus 177 ~~p~llllDEPTsgLD~~~~------------~~i~~~L~~l~~~~g~tii~t~h~~--~----------------~~i~ 226 (606)
.+|+++++||||+.+|+... .++++.|++++++.|.|||+++|.. . ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 47999999999999996533 6788999999988899999999861 1 2356
Q ss_pred hcCCeEEEEcCCe
Q psy10223 227 PFLDRTAYLCLGD 239 (606)
Q Consensus 227 ~~~D~v~vL~~G~ 239 (606)
..+|.+++|++|+
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 7789999998764
No 137
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.25 E-value=9.5e-12 Score=134.90 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEE
Q psy10223 158 ISELTPSEHRRVVIGTQLV----KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTA 233 (606)
Q Consensus 158 v~~LSgGerqRvsIa~aL~----~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~ 233 (606)
+..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+ .+.++|+++|++ ...+.||+++
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~--~~~~~~d~~~ 407 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKN--TMFEKSDALV 407 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCH--HHHTTCSEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCH--HHHHhCCEEE
Confidence 4569999999999999999 57999999999999999999999999998864 378899999973 5678899999
Q ss_pred EEcC
Q psy10223 234 YLCL 237 (606)
Q Consensus 234 vL~~ 237 (606)
.+..
T Consensus 408 ~~~~ 411 (430)
T 1w1w_A 408 GVYR 411 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9963
No 138
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.24 E-value=2.6e-13 Score=139.71 Aligned_cols=129 Identities=15% Similarity=0.135 Sum_probs=87.9
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHH----c
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAH----L 126 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~----~ 126 (606)
+++.+++|.|++|||||||.+.|++.+. + .| .. ++.+.+|+||+.+++. ++++++.+... +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~-~-~g----------~~--~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM-E-KY----------GG--EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-H-HH----------GG--GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh-h-cC----------CC--CceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 5789999999999999999999998875 2 12 01 3446666999988865 88888877631 1
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCc------h--hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 127 SIGPQVSRYVRNARIRQVLADLALS------N--VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 127 ~~~~~~~~~~~~~~v~~~l~~lgL~------~--~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
. ..+.+.........+.++.+... . ....+-..+||||+||+++|++...+|+|+|+|||++++|+..
T Consensus 94 ~-~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 Q-GRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp S-SSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred h-hccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 1 00111111234455666666432 1 1233447899999999999733322999999999999999864
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=8.1e-12 Score=131.02 Aligned_cols=144 Identities=13% Similarity=0.126 Sum_probs=77.1
Q ss_pred EEEEcCCCccHHHHHHHHHc-CCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCC
Q psy10223 56 LAVLGSKGSGKRALLEVISR-RSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVS 133 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g-~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~ 133 (606)
++|.||||+|||||+++|++ +.. +..|++.++|.+... ...+..+++++|.+.+.-..+ + .....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~-~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG-PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D----------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC-TTCCC------------------CCEECSSEEEECCC----------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC-CCCCeEEecceeecccccccceeeeecccceEEecHh--h----------cCCcc
Confidence 89999999999999999999 444 677999999876542 122456778877654311100 0 00001
Q ss_pred HHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE
Q psy10223 134 RYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRA 213 (606)
Q Consensus 134 ~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~t 213 (606)
. ..+++.++.+......+... .+|| +..+|+++++|||++ ||..++..+.+.|.+.. .+.+
T Consensus 106 ~----~~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~ 166 (354)
T 1sxj_E 106 R----IVIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIR 166 (354)
T ss_dssp H----HHHHHHHHHHTTTTC------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEE
T ss_pred h----HHHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCE
Confidence 1 12334444332211111112 4566 788999999999999 99999999999998864 3678
Q ss_pred EEEEecCCcchHHhcCCe
Q psy10223 214 VLLTMEKPRSDVLPFLDR 231 (606)
Q Consensus 214 ii~t~h~~~~~i~~~~D~ 231 (606)
+|+++|++..-...+.+|
T Consensus 167 ~Il~t~~~~~l~~~l~sR 184 (354)
T 1sxj_E 167 LIMVCDSMSPIIAPIKSQ 184 (354)
T ss_dssp EEEEESCSCSSCHHHHTT
T ss_pred EEEEeCCHHHHHHHHHhh
Confidence 888999875433333333
No 140
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.21 E-value=4.6e-14 Score=152.34 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=94.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEc-------
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVN------- 105 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~------- 105 (606)
+.+|+++ + .++|++++|+|||||||||||++|+|..+ +.+|+|.+.|.++.. ...++.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~-~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~ 232 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN-SSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAI 232 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC-CTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHH
Confidence 3467777 4 38999999999999999999999999887 568999998877631 11233455544
Q ss_pred --CCCCC--CCC----CCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh
Q psy10223 106 --HRTDL--IPS----LTVEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV 176 (606)
Q Consensus 106 --q~~~~--~~~----lTV~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~ 176 (606)
|++.. ++. .|+.+++.++..-... ........ ..+.+.|..+++.+.. .+..|||||+|| ||++|+
T Consensus 233 Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~-~~~i~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL~ 307 (418)
T 1p9r_A 233 LRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTA-VGAVTRLRDMGIEPFL--ISSSLLGVLAQR--LVRTLC 307 (418)
T ss_dssp GGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSS-HHHHHHHHHHTCCHHH--HHHHEEEEEEEE--EEEEEC
T ss_pred hccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhH-HHHHHHHHHcCCcHHH--HHHHHHHHHHHH--hhhhhc
Confidence 77764 344 6888888876421100 00000001 1223356778887753 678899999999 999999
Q ss_pred hCCCEEEE
Q psy10223 177 KDPVLLLL 184 (606)
Q Consensus 177 ~~p~llll 184 (606)
.+|++..-
T Consensus 308 ~~p~~~~~ 315 (418)
T 1p9r_A 308 PDCKEPYE 315 (418)
T ss_dssp TTTCEEEE
T ss_pred CCCCccCC
Confidence 99998763
No 141
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.19 E-value=3.4e-14 Score=149.09 Aligned_cols=154 Identities=19% Similarity=0.209 Sum_probs=103.0
Q ss_pred ceeeEEeeEEEEeCC-------eEEEEEcCCCccHHHHHHHHHcCCCC---CCeeEEEECCEeCCc---ccccCeEEEEc
Q psy10223 39 TALILKDISLEVRPG-------EVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSP---QLFQTTCGYVN 105 (606)
Q Consensus 39 ~~~iL~~vs~~v~~G-------e~~~IlG~nGsGKSTLLk~L~g~~~~---~~~G~I~~~G~~~~~---~~~~~~i~yv~ 105 (606)
...+++++++.+++| +.++|.||||+|||||+++|+|.... +.+|.+..++.++.. ...+..+.+++
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 356889999999887 89999999999999999999997621 345555554443321 11245799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHccCCCC-CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 106 HRTDLIPSLTVEQTLYYAAHLSIGPQ-VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 106 q~~~~~~~lTV~e~l~f~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
|.+.+.+ ++.|++..........- .......+.++..+..+++.. ..+.+..||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~------------ 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII------------ 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE------------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce------------
Confidence 9877765 78888865543221000 011122344555666666655 6778899999999998654
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCC
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKS 211 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g 211 (606)
.+||+.+..++.++|++.++..+
T Consensus 175 ----~~Ld~~~~~~l~~iL~~~~~~~~ 197 (334)
T 1in4_A 175 ----LELDFYTVKELKEIIKRAASLMD 197 (334)
T ss_dssp ----EECCCCCHHHHHHHHHHHHHHTT
T ss_pred ----eeCCCCCHHHHHHHHHHHHHHcC
Confidence 78888899999999999877655
No 142
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.15 E-value=1e-12 Score=135.91 Aligned_cols=107 Identities=14% Similarity=0.215 Sum_probs=73.9
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEE---CCEeCCcc--cc-cCeEEEEcCCCC-------------
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL---DGTPMSPQ--LF-QTTCGYVNHRTD------------- 109 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~---~G~~~~~~--~~-~~~i~yv~q~~~------------- 109 (606)
.+.+|++++|+||||||||||||+|+|+.. +.+|+|.+ +|++++.. .+ .+.++|++|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc-ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 355799999999999999999999999987 78899999 88876431 12 235899999874
Q ss_pred ---CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCH
Q psy10223 110 ---LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTP 163 (606)
Q Consensus 110 ---~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSg 163 (606)
++|++|+ ||+.|+.. .. ..+...+++++|+.++|. +..+++++.||.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~-~~-----~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDC-NH-----VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTC-CS-----SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCC-cC-----CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5899999 99887532 11 112345789999999995 777888888875
No 143
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.12 E-value=5.4e-14 Score=155.60 Aligned_cols=173 Identities=16% Similarity=0.143 Sum_probs=101.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe-CCcccccCeEEEEcCCCCC--------
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP-MSPQLFQTTCGYVNHRTDL-------- 110 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~-~~~~~~~~~i~yv~q~~~~-------- 110 (606)
..+++++++.+++|+.++|+|||||||||||++|+|..+ +.+|.|.++|.+ +.. .....+.++.+....
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~-~~~giitied~~E~~~-~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP-PDAKVVSIEDTREIKL-YHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC-TTCCEEEEESSCCCCC-CCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC-CCCCEEEEcCcccccC-CCCCeEEEEeecccccCCcCHHH
Confidence 457889999999999999999999999999999999987 788999998864 221 112345555544332
Q ss_pred --------------CCCCCHHHHHHHHHHccCCCC-CCHHHHHHHHHHHHHHcCC-----ch----hhc---ccCCCCCH
Q psy10223 111 --------------IPSLTVEQTLYYAAHLSIGPQ-VSRYVRNARIRQVLADLAL-----SN----VAR---RNISELTP 163 (606)
Q Consensus 111 --------------~~~lTV~e~l~f~~~~~~~~~-~~~~~~~~~v~~~l~~lgL-----~~----~~~---~~v~~LSg 163 (606)
+..++..|++.+......+.. ++. .....+.++++++.. .. ..+ .....+|+
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 234444444333221111000 000 000112333433322 11 112 22345799
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE--EecCCcchHHhcC
Q psy10223 164 SEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL--TMEKPRSDVLPFL 229 (606)
Q Consensus 164 GerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~--t~h~~~~~i~~~~ 229 (606)
|||||+.++. + | |+|||+.....+++.|.++.+ .++|+++ ++|. .+++.+.|
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~-~~~tii~~~~sH~-l~ei~~~~ 457 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP-KEDKHIEVSMPKK-LEKMADFL 457 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET-TTTEEEECSCCTH-HHHHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc-cCCEEEEcccHHH-HHHHHHHc
Confidence 9999877641 1 7 999999876666666666543 3667664 5553 34454444
No 144
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.10 E-value=3.3e-13 Score=131.72 Aligned_cols=115 Identities=14% Similarity=0.136 Sum_probs=65.9
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCCC--CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHcc
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLS 127 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~ 127 (606)
.++|++++|+||||||||||+++|+|++++ +..|.|..+|...... ..+++....+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~--------------------~~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNR--------------------LLEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHH--------------------HHGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHH--------------------HHHHhcccccCC
Confidence 579999999999999999999999998751 2345555555433211 111100000000
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCch----hhcccCCCCCHHHHHHHHHH-HHHhhCCCEEEEeCCC
Q psy10223 128 IGPQVSRYVRNARIRQVLADLALSN----VARRNISELTPSEHRRVVIG-TQLVKDPVLLLLDEPT 188 (606)
Q Consensus 128 ~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSgGerqRvsIa-~aL~~~p~llllDEPT 188 (606)
.+..... ....+.+..+...+ .......++|+||+||++++ ++++.++.++++|||.
T Consensus 79 ~~~~~~~----~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 79 APETFDF----EGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp SGGGBCH----HHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CCchhhH----HHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0001111 11222333221111 11122345799999999998 8888888888888884
No 145
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.09 E-value=5.7e-14 Score=150.17 Aligned_cols=170 Identities=11% Similarity=0.117 Sum_probs=117.5
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCC-----------CCCCeeEEEECCEeCCc--c--cccCe---EEEEcCCCCC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRS-----------SGTTRGEIILDGTPMSP--Q--LFQTT---CGYVNHRTDL 110 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~-----------~~~~~G~I~~~G~~~~~--~--~~~~~---i~yv~q~~~~ 110 (606)
.+++|+.++|+|+||||||||+|+|+|.. ..+..|.+.++|..+.. . ..++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 56789999999999999999999999931 12678999998854321 0 11222 2466777777
Q ss_pred CCCCCHHHHH--HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeC
Q psy10223 111 IPSLTVEQTL--YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDP--VLLLLDE 186 (606)
Q Consensus 111 ~~~lTV~e~l--~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p--~llllDE 186 (606)
.+.++..|.+ .|...++. ++.++..++.. .+..+..+||+. +| ++.++||
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~--~d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAF--DDAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECC--CTTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhcc--ccceeeeecccc------------Ccchhhhhchh
Confidence 7777766655 33333221 11111111221 144555677653 89 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHHH-HHhCCcEEEEEecCCcchHHhcCCeEE-EEcCC-eEEEecChhH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSY-AKRKSRAVLLTMEKPRSDVLPFLDRTA-YLCLG-DLIYAGPTRL 248 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l-~~~~g~tii~t~h~~~~~i~~~~D~v~-vL~~G-~~v~~G~~~~ 248 (606)
|+.++|+....+.++.+++. ++ .|.|++ +|. ..++.++||++. +|.+| +.++.|+.++
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~-~g~ti~--sh~-~~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSR-GANTLE--MKA-KKEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-SSCSSS--HHH-HHHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh-cCCccc--ccc-HHHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 99999999999999999887 54 466654 564 567899999999 99999 8888776543
No 146
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.09 E-value=4.5e-12 Score=131.26 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=70.5
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEE---CCEeCCcc--cccCeEEEEcCCCCCCC----CCCHHH
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL---DGTPMSPQ--LFQTTCGYVNHRTDLIP----SLTVEQ 118 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~---~G~~~~~~--~~~~~i~yv~q~~~~~~----~lTV~e 118 (606)
+.+.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|+..+.. .++..++|+.|.+.+.+ .+|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc-ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 4567899999999999999999999999987 67899998 78765431 12222799999987655 6899 8
Q ss_pred HHH--HHH------HccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHH
Q psy10223 119 TLY--YAA------HLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRR 168 (606)
Q Consensus 119 ~l~--f~~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqR 168 (606)
++. |.. .++........+...+++++++.++|.+...+....++.|++||
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 883 331 11111101111223568899999999876666666677777763
No 147
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.08 E-value=3.4e-14 Score=138.01 Aligned_cols=57 Identities=11% Similarity=-0.005 Sum_probs=42.9
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 171 IGT-QLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 171 Ia~-aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
+++ +++.+|++++|||+|+++|..+...+.+.|.+..++. ...|. . ..+|+++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~-----~~a~~----~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM-----ESSKE----P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT-----TGGGS----T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-----HHhhc----c-CCceEEEECCC
Confidence 455 6788888899999999999999999999998876541 11231 1 57999988764
No 148
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.07 E-value=1.4e-14 Score=148.12 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=96.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---cccCeEEEEcCCC-CCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---LFQTTCGYVNHRT-DLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~~~~~i~yv~q~~-~~~~~l 114 (606)
...+++++++.+++| ++|+||||||||||+|+|+|... + |.|.++|.++... ..++.+++++|.. ...|.+
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-L--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-C--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-C--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 456899999999999 99999999999999999999875 2 7899998776321 1223455566553 344555
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-----
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV----- 189 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs----- 189 (606)
++.|++......+ .. .... .+....++.+..|||||+||+.|++++..+|++| ||++.
T Consensus 107 ~~~Deid~~~~~r-----~~----~~~~------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRf 169 (274)
T 2x8a_A 107 IFFDEVDALCPRR-----SD----RETG------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRL 169 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSS
T ss_pred Eeeehhhhhhccc-----CC----Ccch------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccC
Confidence 5555554321100 00 0000 1334556677889999999999999999999985 98864
Q ss_pred -------CCCHHHHHHHHHHH
Q psy10223 190 -------NLDPLSTYLIVSML 203 (606)
Q Consensus 190 -------gLD~~~~~~i~~~L 203 (606)
-.|...+.++++.+
T Consensus 170 d~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 170 DKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp CEEEECCSCCHHHHHHHHHHH
T ss_pred CeEEEeCCcCHHHHHHHHHHH
Confidence 23555665555443
No 149
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.04 E-value=3.1e-11 Score=131.87 Aligned_cols=181 Identities=14% Similarity=0.148 Sum_probs=115.0
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCee-EEEECCEeCCcccccCeE-EEEcCCCCCCCCCCHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG-EIILDGTPMSPQLFQTTC-GYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G-~I~~~G~~~~~~~~~~~i-~yv~q~~~~~~~lTV~e 118 (606)
..|+++.+-+++|+++.|.|+||+|||||+..|++... ...| .|.|-+.+.+...+..++ +... .... +
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-~~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~-~ 261 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-TKTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA-Q 261 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-HHSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-HhCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH-H
Confidence 46888888899999999999999999999999887542 1123 343333222211110000 0000 0000 0
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC----
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV--KDPVLLLLDEPTVNLD---- 192 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~--~~p~llllDEPTsgLD---- 192 (606)
. ++. ...+.. ..+++.+.++.++..+..-....++|.+|.+ +.++.++ .+|+++++|+++...+
T Consensus 262 ~------l~~-g~l~~~-~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~ 331 (454)
T 2r6a_A 262 N------LRT-GKLTPE-DWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRS 331 (454)
T ss_dssp H------HHT-SCCCHH-HHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC-
T ss_pred H------Hhc-CCCCHH-HHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCC
Confidence 0 010 123332 2345566666665544433345689999987 5666666 6899999999998773
Q ss_pred ----HHHHHHHHHHHHHHHHhCCcEEEEEecC-----------Cc-------chHHhcCCeEEEEcCCeE
Q psy10223 193 ----PLSTYLIVSMLSSYAKRKSRAVLLTMEK-----------PR-------SDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 193 ----~~~~~~i~~~L~~l~~~~g~tii~t~h~-----------~~-------~~i~~~~D~v~vL~~G~~ 240 (606)
.....++.+.|+.++++.+.+||+++|- |. ..+...+|.|++|+.++.
T Consensus 332 ~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 332 KENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 3345778889999998889999998871 22 147788999999987653
No 150
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.00 E-value=4.2e-11 Score=118.56 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=47.8
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcch-------HHhcCCeEEEEcC
Q psy10223 177 KDPVLLLLDEPTVNL--DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSD-------VLPFLDRTAYLCL 237 (606)
Q Consensus 177 ~~p~llllDEPTsgL--D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~-------i~~~~D~v~vL~~ 237 (606)
.+|+++++|+|+..+ |+....+++..|.+++++.|.|+++++|...+. +.+.+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 665566777778887777899999998865431 4678899999974
No 151
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.99 E-value=3.7e-12 Score=132.17 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=88.0
Q ss_pred eeEEeeEEEE-------------------eCCeEEEEEcCCCccHHHHHHHHHcCCCC-CCeeEEEE---CCEeCCcccc
Q psy10223 41 LILKDISLEV-------------------RPGEVLAVLGSKGSGKRALLEVISRRSSG-TTRGEIIL---DGTPMSPQLF 97 (606)
Q Consensus 41 ~iL~~vs~~v-------------------~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~~~G~I~~---~G~~~~~~~~ 97 (606)
++++++++.+ ++|++++|+||||||||||+++|+|+... +.+|+|.+ +|..... ..
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~-~~ 127 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPN-QV 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH-HH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcH-HH
Confidence 5788999887 99999999999999999999999997641 46799999 8876542 23
Q ss_pred cCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhh
Q psy10223 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVK 177 (606)
Q Consensus 98 ~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~ 177 (606)
++.++++ |...+++.+|+.+++.+...++.... .+ ..+.-..+. .+|+..+.+.+.
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~-----------------~i----~~P~~~~~~--~~~~~~~~~~~~ 183 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP-----------------NV----TAPVYSHLI--YDVIPDGDKTVV 183 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS-----------------CE----EECCEETTT--TEECTTCCEEEC
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC-----------------ce----ecccccccc--cCcccccceecC
Confidence 4457777 77778889999999988766532110 00 000001111 122222223456
Q ss_pred CCCEEEEeCCCCCCCH
Q psy10223 178 DPVLLLLDEPTVNLDP 193 (606)
Q Consensus 178 ~p~llllDEPTsgLD~ 193 (606)
+|+++++|.|....|.
T Consensus 184 ~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 184 QPDILILEGLNVLQSG 199 (308)
T ss_dssp -CCEEEEECTTTTCCG
T ss_pred CCCEEEECchhhCCCc
Confidence 7899999999988774
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.95 E-value=3.1e-10 Score=117.55 Aligned_cols=115 Identities=14% Similarity=0.207 Sum_probs=81.4
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAA 124 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~ 124 (606)
.+++..++|++++|+|+|||||||+++.|++... +..|+|.+.+.+.. |. ++
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-~~g~kV~lv~~D~~----r~-----------------------~a 147 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTF----RA-----------------------AA 147 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTT----CH-----------------------HH
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-hcCCEEEEEccccc----cH-----------------------HH
Confidence 3455678999999999999999999999999875 45577777655431 10 00
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q psy10223 125 HLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRV---VIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201 (606)
Q Consensus 125 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRv---sIa~aL~~~p~llllDEPTsgLD~~~~~~i~~ 201 (606)
.+..+.+++.+++.. +...|+|+.+++ +|++++..+|+++++|||.. ......+++
T Consensus 148 -------------~eqL~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~ 206 (306)
T 1vma_A 148 -------------IEQLKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLME 206 (306)
T ss_dssp -------------HHHHHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHH
T ss_pred -------------HHHHHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHH
Confidence 012334455566643 346689999999 89999999999999999975 334455666
Q ss_pred HHHHHHH
Q psy10223 202 MLSSYAK 208 (606)
Q Consensus 202 ~L~~l~~ 208 (606)
.|+++.+
T Consensus 207 eL~~l~~ 213 (306)
T 1vma_A 207 ELRKVHR 213 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 153
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.91 E-value=1e-09 Score=115.71 Aligned_cols=149 Identities=15% Similarity=0.213 Sum_probs=86.5
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHcc
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLS 127 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~ 127 (606)
+-+++|+++.|.||||||||||+..++.... ...| .+.|+.-+...-+ . .+.+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~-~~g~----------------~vlyi~~E~~~~~------~--~a~~-- 108 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQ-AAGG----------------IAAFIDAEHALDP------E--YAKK-- 108 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH-HTTC----------------CEEEEESSCCCCH------H--HHHH--
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHH-hCCC----------------eEEEEECCCCcCH------H--HHHH--
Confidence 3689999999999999999999888775422 1112 2344433321110 0 1111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC----------CH--
Q psy10223 128 IGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKD--PVLLLLDEPTVNL----------DP-- 193 (606)
Q Consensus 128 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~--p~llllDEPTsgL----------D~-- 193 (606)
+|.....-......+. .+-+.++++++.+ |+++++||+++.+ |+
T Consensus 109 --------------------lG~~~~~l~i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~ 166 (349)
T 2zr9_A 109 --------------------LGVDTDSLLVSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHV 166 (349)
T ss_dssp --------------------TTCCGGGCEEECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CC
T ss_pred --------------------cCCCHHHeEEecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchh
Confidence 1111000000011122 2345677878755 9999999999998 33
Q ss_pred -HHHHHHHHHHHHH---HHhCCcEEEEEecCCcc---------------hHHhcCCeEEEEcCCeEEEecC
Q psy10223 194 -LSTYLIVSMLSSY---AKRKSRAVLLTMEKPRS---------------DVLPFLDRTAYLCLGDLIYAGP 245 (606)
Q Consensus 194 -~~~~~i~~~L~~l---~~~~g~tii~t~h~~~~---------------~i~~~~D~v~vL~~G~~v~~G~ 245 (606)
..+..+.+.|+++ +++.+.++|++.|.... .+...+|.++.++.++++..|+
T Consensus 167 ~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 167 GLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2223344444444 46678999998875321 2567899999998887665554
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.90 E-value=3.5e-09 Score=109.11 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=83.1
Q ss_pred EeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHH
Q psy10223 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYA 123 (606)
Q Consensus 44 ~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~ 123 (606)
+++++. +|++++|+|+||+||||+++.|++... +..|+|.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-~~~~~v~l~~~d~~~~~------------------~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQRPA------------------AR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-HTTCCEEEEECCSSCHH------------------HH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEecCCcccHh------------------HH-HHH---
Confidence 678887 999999999999999999999999875 45678887665542110 00 000
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHHHHHH
Q psy10223 124 AHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP-TVNLDPLSTYLIVSM 202 (606)
Q Consensus 124 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP-TsgLD~~~~~~i~~~ 202 (606)
..+.+..++...... .+-+..+.+|.+|+.+...+++++++||| +.++|.....++.+.
T Consensus 146 ------------------~~~~~~~~l~~~~~~--~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~ 205 (295)
T 1ls1_A 146 ------------------RLLGEKVGVPVLEVM--DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARL 205 (295)
T ss_dssp ------------------HHHHHHHTCCEEECC--TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHH
T ss_pred ------------------HHhcccCCeEEEEcC--CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHH
Confidence 111233444322110 12344566789999998899999999999 999999888888877
Q ss_pred HHHH
Q psy10223 203 LSSY 206 (606)
Q Consensus 203 L~~l 206 (606)
.+..
T Consensus 206 ~~~~ 209 (295)
T 1ls1_A 206 KEVL 209 (295)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 7665
No 155
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.83 E-value=1.1e-10 Score=128.42 Aligned_cols=167 Identities=16% Similarity=0.131 Sum_probs=100.1
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHc-CCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCC--CHHHHHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISR-RSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSL--TVEQTLY 121 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g-~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~l--TV~e~l~ 121 (606)
.+++++.++..++|.|++||||||+|++|.. +......|++.+.+.+.+...+.. ...+|++ +|.++..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~--------~~~lPhl~~~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSV--------YEGIPHLLTEVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGG--------GTTCTTBSSSCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhh--------hccCCcccceeecCHH
Confidence 4678888999999999999999999998764 222133466776666544211110 0112222 2222222
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcc--c-CCCCCHHHHHHH----------HHHHHHhhCCC-EEEEeCC
Q psy10223 122 YAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR--N-ISELTPSEHRRV----------VIGTQLVKDPV-LLLLDEP 187 (606)
Q Consensus 122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--~-v~~LSgGerqRv----------sIa~aL~~~p~-llllDEP 187 (606)
.+...- .....+.++| .++++..|+.+..+. + ...+|+||+||. .+++++...|. ++++||+
T Consensus 231 ~a~~~L---~~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~ 306 (512)
T 2ius_A 231 DAANAL---RWCVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEF 306 (512)
T ss_dssp HHHHHH---HHHHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETH
T ss_pred HHHHHH---HHHHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCH
Confidence 222110 0112344445 367888888765432 2 235788887652 35566677898 8899999
Q ss_pred CCCCCHHHHHHHHHHHHHHH---HhCCcEEEEEecCCcch
Q psy10223 188 TVNLDPLSTYLIVSMLSSYA---KRKSRAVLLTMEKPRSD 224 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~---~~~g~tii~t~h~~~~~ 224 (606)
+.-+|.. ..++.+.|.+++ +..|.++|+++|.|..+
T Consensus 307 ~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~d 345 (512)
T 2ius_A 307 ADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVD 345 (512)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTT
T ss_pred HHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccc
Confidence 9988843 344555555554 34477999999998743
No 156
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.80 E-value=8.3e-10 Score=120.72 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=48.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~ 93 (606)
..+|+|+|+++++ |+++|+|||||||||||++|+|+.+ +.+|+|.++|.++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-PDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-CCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-CCCCEEEECCEEcc
Confidence 4579999999999 9999999999999999999999987 78899999998764
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.78 E-value=6.2e-09 Score=107.32 Aligned_cols=142 Identities=15% Similarity=0.162 Sum_probs=85.5
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGP 130 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~ 130 (606)
++|++++|+|||||||||+++.|++... +.+| +++.++.+|.. ..++.|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~-~~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~----- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM-LEKH---------------KKIAFITTDTY---RIAAVEQLKTYAE----- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH-HTTC---------------CCEEEEECCCS---STTHHHHHHHHHT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-HhcC---------------CEEEEEecCcc---cchHHHHHHHHHH-----
Confidence 5799999999999999999999999864 3334 23556655542 2355555544332
Q ss_pred CCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--H
Q psy10223 131 QVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYA--K 208 (606)
Q Consensus 131 ~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~--~ 208 (606)
..|+.... ..+. ..-+.+|+ .+.+|+++++| |+|+|+.....+.++.+.+. .
T Consensus 159 ----------------~~gl~~~~-----~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~ 212 (296)
T 2px0_A 159 ----------------LLQAPLEV-----CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFES 212 (296)
T ss_dssp ----------------TTTCCCCB-----CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCT
T ss_pred ----------------hcCCCeEe-----cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcC
Confidence 12221110 0122 33355555 45999999999 99999876654444433322 1
Q ss_pred hCCcEEEE-EecCCcchHHhcCCeEEEEcCCeEEEe
Q psy10223 209 RKSRAVLL-TMEKPRSDVLPFLDRTAYLCLGDLIYA 243 (606)
Q Consensus 209 ~~g~tii~-t~h~~~~~i~~~~D~v~vL~~G~~v~~ 243 (606)
..+.++++ ++|. ..++.+.+|++..+..+.++..
T Consensus 213 ~~~~~lVl~at~~-~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 213 SIQSFLVLSATAK-YEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp TEEEEEEEETTBC-HHHHHHHTTTTSSSCCCEEEEE
T ss_pred CCeEEEEEECCCC-HHHHHHHHHHHhcCCCCEEEEe
Confidence 12234444 2443 4567777777666666777653
No 158
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.78 E-value=6.1e-11 Score=134.08 Aligned_cols=161 Identities=15% Similarity=0.069 Sum_probs=100.6
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCC---------
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRT--------- 108 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~--------- 108 (606)
+...+++++++.+++|+.++|+||||+|||||+++|++.......|.+.+++.+.+. ....++++++..
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHH
Confidence 345689999999999999999999999999999999999874444888888876542 345678877642
Q ss_pred -------------CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHH
Q psy10223 109 -------------DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQL 175 (606)
Q Consensus 109 -------------~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL 175 (606)
..++.+++.+|+........+...-. ......-+.+|..+......+++|+|++|++..+...
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~----~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~ 198 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID----ATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIH 198 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEE----CTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEE----cCCCCHHhcCceEEechhhcCCccccccccccCceee
Confidence 11111111111110000000000000 0000011122222222223468999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy10223 176 VKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205 (606)
Q Consensus 176 ~~~p~llllDEPTsgLD~~~~~~i~~~L~~ 205 (606)
..++.+|++||... |++.....+.+.|.+
T Consensus 199 ~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 199 RAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999988 899988888888864
No 159
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.74 E-value=4.1e-10 Score=107.82 Aligned_cols=38 Identities=11% Similarity=0.046 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy10223 167 RRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206 (606)
Q Consensus 167 qRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l 206 (606)
+++.+|++++.+|+++++| ||++|.....++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3477899999999999999 9999999999999988753
No 160
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.74 E-value=3.8e-10 Score=108.70 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=46.8
Q ss_pred EEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---cccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---LFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 47 s~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
|+.+++|++++|+||||||||||+++|+|+.+ .+.+++...... ..+..++|++|++..++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 56788999999999999999999999999853 356666554321 124567888888766555555444
No 161
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.72 E-value=2.5e-12 Score=131.07 Aligned_cols=124 Identities=12% Similarity=0.158 Sum_probs=81.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC-CCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD-LIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~~lT 115 (606)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.+++.++.. ...++.+.+++|... ..|.++
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 45788999999999 99999999999999999999864 5889888765421 111233555666542 566777
Q ss_pred HHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCE
Q psy10223 116 VEQTLYYAAHLSIGP-QVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVL 181 (606)
Q Consensus 116 V~e~l~f~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~l 181 (606)
+.|++......+... .....+..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHH-------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHH-------------HHHhCCCCCCCEEEEEecCCchh
Confidence 777775433211000 001112222333333 35789999999999999999876
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.68 E-value=4.2e-12 Score=127.32 Aligned_cols=128 Identities=13% Similarity=0.173 Sum_probs=82.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---cccCeEEEEcCCC-CCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---LFQTTCGYVNHRT-DLIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~~~~~i~yv~q~~-~~~~~lT 115 (606)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.++... ..++.+++++|.. ...|.++
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 45789999999999 99999999999999999999764 58888887654211 1123345556653 3556677
Q ss_pred HHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 116 VEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 116 V~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
+.|++......+.. ......+..+.+.+++ ..|||||+||+.|++++..+|++ +|++
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHH-------------HHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHH-------------HHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 77777443321100 0001112222333333 35789999999999999999976 4543
No 163
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.55 E-value=2.8e-08 Score=104.80 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=27.3
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+=+++|+++.|.||||||||||+..++...
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999999998764
No 164
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.48 E-value=2.7e-08 Score=98.09 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=22.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHH-cCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS-RRSS 78 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~-g~~~ 78 (606)
.+..+++|+++++|++++|+||||||||||+++|+ |+.+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 46789999999999999999999999999999999 9865
No 165
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.46 E-value=1.5e-10 Score=123.31 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=82.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCC-CCCCCCHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTD-LIPSLTVEQ 118 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~-~~~~lTV~e 118 (606)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|++..-..+.. .++..+++++|... ++..++...
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~----~g~~~~~~~~~~--~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC----GGKALNVNLPLD--RLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH----CCEEECCSSCTT--THHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc----CCcEEEEeccch--hHHHHHHHhcchhHHHHHHHHHHH
Confidence 36899999999999999999999999999999999864 366654111111 11112444555432 222222211
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHH---cCCc-------------hhhcccCCCCCHHHHHHHHHHHHHhhCCCEE
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLAD---LALS-------------NVARRNISELTPSEHRRVVIGTQLVKDPVLL 182 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~---lgL~-------------~~~~~~v~~LSgGerqRvsIa~aL~~~p~ll 182 (606)
.+ .+.............+.+.++. +.+. ...+.....+++|+++|+..+.+++.+|+++
T Consensus 230 ~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 230 GE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp TT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 10 0000000000011223333321 0011 1234456789999999999888888999988
Q ss_pred E-EeCCCC
Q psy10223 183 L-LDEPTV 189 (606)
Q Consensus 183 l-lDEPTs 189 (606)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 7 999986
No 166
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.43 E-value=1.4e-07 Score=98.77 Aligned_cols=128 Identities=12% Similarity=0.159 Sum_probs=84.6
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
.-|+.+.+-+++|+++.|.|+||+|||||+.-++.... .. ...+.|+.= .++..+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a-~~----------------g~~Vl~fSl------Ems~~q-- 88 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL-ND----------------DRGVAVFSL------EMSAEQ-- 88 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH-HT----------------TCEEEEEES------SSCHHH--
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-Hc----------------CCeEEEEeC------CCCHHH--
Confidence 45777777799999999999999999999988875422 11 122344321 123222
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
...|+......+.+.+..+ +.||.+|.+|+..|...+.++++++.|+|... ..++.
T Consensus 89 ----------------l~~Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~ 144 (338)
T 4a1f_A 89 ----------------LALRALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIR 144 (338)
T ss_dssp ----------------HHHHHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHH
T ss_pred ----------------HHHHHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHH
Confidence 2222222222233333322 47999999999999999999999999998654 33666
Q ss_pred HHHHHHHHhC-CcEEEEE
Q psy10223 201 SMLSSYAKRK-SRAVLLT 217 (606)
Q Consensus 201 ~~L~~l~~~~-g~tii~t 217 (606)
..++++.++. +..+|++
T Consensus 145 ~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 145 LQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp HHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 7777777666 6666665
No 167
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.43 E-value=6.4e-09 Score=103.05 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=41.3
Q ss_pred EEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----------ccccCeEEEEcCC
Q psy10223 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----------QLFQTTCGYVNHR 107 (606)
Q Consensus 47 s~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----------~~~~~~i~yv~q~ 107 (606)
++++++ ++++|+|||||||||||++|+|.+. +.+|+|.++|.++.. ...+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI-PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS-CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc-cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 566667 8999999999999999999999987 678999999987621 1135678888874
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.42 E-value=3.5e-08 Score=94.60 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=32.6
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy10223 169 VVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYA 207 (606)
Q Consensus 169 vsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~ 207 (606)
...|++++.+|++.++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887654
No 169
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.40 E-value=2.5e-07 Score=101.25 Aligned_cols=112 Identities=14% Similarity=0.281 Sum_probs=72.0
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLY 121 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~ 121 (606)
.++++++.+++| ++|.||||+|||||+|+|++....+. +.+++.+. . ..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~f---~~is~~~~------------------~-~~------- 88 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVPF---FHISGSDF------------------V-EL------- 88 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCCE---EEEEGGGT------------------T-TC-------
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCCe---eeCCHHHH------------------H-HH-------
Confidence 455667777777 88999999999999999998543110 11111000 0 00
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC----------CCCC
Q psy10223 122 YAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP----------TVNL 191 (606)
Q Consensus 122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP----------TsgL 191 (606)
.++ .|++++|..++++....|.++++||+ +.|.
T Consensus 89 -----------------------------------~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~ 131 (476)
T 2ce7_A 89 -----------------------------------FVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131 (476)
T ss_dssp -----------------------------------CTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC--------
T ss_pred -----------------------------------Hhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcC
Confidence 000 15677888899999999999999999 3467
Q ss_pred CHHHHHHHHHHHHHHH---HhCCcEEEEEecCC
Q psy10223 192 DPLSTYLIVSMLSSYA---KRKSRAVLLTMEKP 221 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~---~~~g~tii~t~h~~ 221 (606)
|......+.++|..+- ...+..+|.++|+|
T Consensus 132 ~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp -CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 7766666666666653 23467788888876
No 170
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.37 E-value=4.2e-07 Score=96.25 Aligned_cols=148 Identities=17% Similarity=0.206 Sum_probs=87.2
Q ss_pred eCCeE-EEEEcCCCccHHHHHHHHHcCCCC----------CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH-
Q psy10223 51 RPGEV-LAVLGSKGSGKRALLEVISRRSSG----------TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ- 118 (606)
Q Consensus 51 ~~Ge~-~~IlG~nGsGKSTLLk~L~g~~~~----------~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e- 118 (606)
++|-. ++|+|+||||||||+|.|+|.... +..|.|.++|.++. +....|++.+. |.-.|..
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~l----p~~lve~f 248 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGI----PPQIVDAF 248 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSC----CGGGHHHH
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcC----CHHHHHHH
Confidence 34544 999999999999999999987531 34588888886542 12223443332 1212221
Q ss_pred --HHHHHHHc----c-CCCCCCH---HHHHHHHHHHHHHcCCchhh----cccCCCCCHHHHHHHHHH----HHH-hhCC
Q psy10223 119 --TLYYAAHL----S-IGPQVSR---YVRNARIRQVLADLALSNVA----RRNISELTPSEHRRVVIG----TQL-VKDP 179 (606)
Q Consensus 119 --~l~f~~~~----~-~~~~~~~---~~~~~~v~~~l~~lgL~~~~----~~~v~~LSgGerqRvsIa----~aL-~~~p 179 (606)
++...... . ....... .+..+.+.++++.+++.+.. ..++..+|+++++|+.++ +++ ..+|
T Consensus 249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 11111000 0 0001111 22334466778888765432 344666888888988887 444 3334
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q psy10223 180 VLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209 (606)
Q Consensus 180 ~llllDEPTsgLD~~~~~~i~~~L~~l~~~ 209 (606)
++ +|+|++|.....++.+.|.+....
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence 44 899999999999999999887654
No 171
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.37 E-value=4.8e-07 Score=93.84 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=30.6
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
.-|+++.+-+++|+++.|.|+||+|||||+..++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45777777799999999999999999999888774
No 172
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.35 E-value=1.1e-08 Score=98.67 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=32.6
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~ 93 (606)
..+.....++|++++|+||||||||||+|+|++.. |.+.++|.++.
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~ 64 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFH 64 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGS
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccc
Confidence 33334667899999999999999999999999865 67888876653
No 173
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.19 E-value=1.2e-06 Score=101.67 Aligned_cols=76 Identities=8% Similarity=0.083 Sum_probs=59.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeE
Q psy10223 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV-NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRT 232 (606)
Q Consensus 156 ~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs-gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v 232 (606)
..+.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+..... ..+++++|..++.+.+.+++++.
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 4456689999999999999999999999999995 9998887777777765532 45677776333556777788753
No 174
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.15 E-value=6.5e-07 Score=84.43 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=31.3
Q ss_pred EeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 44 ~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+++++.+.+| +++|+||||||||||+++|.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 6888999999 999999999999999999998765
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.13 E-value=7.5e-07 Score=85.42 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=26.8
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+++++|++++|+||||||||||++.|++...
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3578999999999999999999999999874
No 176
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.09 E-value=4.1e-07 Score=94.66 Aligned_cols=78 Identities=12% Similarity=0.198 Sum_probs=57.5
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccc-----cCeEEEE-cCCCC
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLF-----QTTCGYV-NHRTD 109 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~-----~~~i~yv-~q~~~ 109 (606)
++++++.+++|++++|+|+||+||||++..|++... +..|+|.+.+.+... ..+ +..+.++ +|...
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~-~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA-ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 478999999999999999999999999999999876 456889887776532 112 5568888 66654
Q ss_pred CCCCCCHHHHHH
Q psy10223 110 LIPSLTVEQTLY 121 (606)
Q Consensus 110 ~~~~lTV~e~l~ 121 (606)
..|..++.+++.
T Consensus 174 ~~p~~~~~~~l~ 185 (320)
T 1zu4_A 174 ADPASVVFDAIK 185 (320)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 444444444443
No 177
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.09 E-value=1.4e-05 Score=83.76 Aligned_cols=139 Identities=13% Similarity=0.089 Sum_probs=80.2
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCC-CCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHc
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRS-SGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHL 126 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~-~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~ 126 (606)
+-+++|+++.|.||+|||||||+..++... .+...| | ....+.|+.-+..+ ...+-...+.++
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g-------~~~~vlyi~~E~~~----~~~~l~~~~~~~ 180 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----Y-------PGGKIIFIDTENTF----RPDRLRDIADRF 180 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----B-------CCCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----C-------CCCeEEEEECCCCC----CHHHHHHHHHHc
Confidence 568999999999999999999999888642 111100 1 11345566544321 222222222221
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHH-HHHHHHHHHh----hCCCEEEEeCCCCCCCHH-------
Q psy10223 127 SIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEH-RRVVIGTQLV----KDPVLLLLDEPTVNLDPL------- 194 (606)
Q Consensus 127 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGer-qRvsIa~aL~----~~p~llllDEPTsgLD~~------- 194 (606)
+... +++++.+.+ .+..++.+. +.+..++.++ .+++++++|+.++-.+..
T Consensus 181 ----g~~~-------~~~l~~l~~-------~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~ 242 (343)
T 1v5w_A 181 ----NVDH-------DAVLDNVLY-------ARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGEL 242 (343)
T ss_dssp ----TCCH-------HHHHHTEEE-------EECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCH
T ss_pred ----CCCH-------HHHHhceeE-------eecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccH
Confidence 1111 122332211 112233322 4455555665 579999999999865431
Q ss_pred -----HHHHHHHHHHHHHHhCCcEEEEEecC
Q psy10223 195 -----STYLIVSMLSSYAKRKSRAVLLTMEK 220 (606)
Q Consensus 195 -----~~~~i~~~L~~l~~~~g~tii~t~h~ 220 (606)
...++++.|++++++.+.+||++.|-
T Consensus 243 ~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 243 AERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 13567777888888889998887663
No 178
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.09 E-value=4.1e-07 Score=87.68 Aligned_cols=127 Identities=13% Similarity=0.168 Sum_probs=69.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSR 134 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~ 134 (606)
+++|+|+|||||||+.+.|+++ |...+++-.+ .+. +. + +. .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l------g~~~id~d~~----~~~-~~---~-----~~-------------------~- 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL------GVPLVDADVV----ARE-VV---A-----KD-------------------S- 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT------TCCEEEHHHH----HHH-TT---C-----SS-------------------C-
T ss_pred EEEEECCCCCCHHHHHHHHHHC------CCcccchHHH----HHH-Hc---c-----CC-------------------h-
Confidence 6899999999999999999983 2222322111 000 00 0 00 0
Q ss_pred HHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q psy10223 135 YVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214 (606)
Q Consensus 135 ~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~ti 214 (606)
..+.++.+.+|.... .+.|+.+|..++..+..+|+.+.++ .+.++|.....+.+.++.. .+.++
T Consensus 45 ----~~~~~i~~~~g~~~~-------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~v 108 (206)
T 1jjv_A 45 ----PLLSKIVEHFGAQIL-------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYT 108 (206)
T ss_dssp ----HHHHHHHHHHCTTCC-------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEE
T ss_pred ----HHHHHHHHHhCHHHh-------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEE
Confidence 123444555554321 2578888999988888887654433 3345666555555544332 24577
Q ss_pred EEEecCCcch-HHhcCCeEEEEc
Q psy10223 215 LLTMEKPRSD-VLPFLDRTAYLC 236 (606)
Q Consensus 215 i~t~h~~~~~-i~~~~D~v~vL~ 236 (606)
|+..|...+. +.+.||.+++|+
T Consensus 109 v~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 109 LFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp EEECTTTTTTTCGGGCSEEEEEE
T ss_pred EEEechhhhcCcHhhCCEEEEEE
Confidence 7776643221 367789988885
No 179
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=1.4e-06 Score=83.82 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=24.7
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+...+++|||+.+++|++++|+|++||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999999999999999999765
No 180
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.07 E-value=7.3e-09 Score=114.06 Aligned_cols=130 Identities=13% Similarity=0.176 Sum_probs=82.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---cccCeEEEEcCCCC-CCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---LFQTTCGYVNHRTD-LIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~~~~~i~yv~q~~~-~~~~lT 115 (606)
..+++++++.+++| ++|.||||+|||||+|+|++... .+.+.++|.++... ...+.+..++|... ..|.+.
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 35678889999999 99999999999999999999764 47888888665321 01122334455432 344444
Q ss_pred HHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 116 VEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 116 V~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+.|++......+.. ......+..+.+.+++. .||||++|+..|+.+...+|++ +||+..
T Consensus 128 ~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 128 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 44544322111100 00112233344455544 3678899999999999999987 888764
No 181
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.04 E-value=7.8e-07 Score=84.70 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
|++++|+||||||||||+|+|+|+.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999875
No 182
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.03 E-value=5.6e-06 Score=87.18 Aligned_cols=60 Identities=13% Similarity=0.214 Sum_probs=46.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEe
Q psy10223 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLD-EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTM 218 (606)
Q Consensus 156 ~~v~~LSgGerqRvsIa~aL~~~p~llllD-EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~ 218 (606)
.....+|+||+|++. +.+...++-++++| +|+.|+|.....++++.++.... +..+|++.
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 455678999998886 55556778889999 99999999998888888776542 55555555
No 183
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.03 E-value=1.7e-05 Score=82.39 Aligned_cols=140 Identities=18% Similarity=0.179 Sum_probs=80.5
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHcc
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLS 127 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~ 127 (606)
+-+++|+++.|.||+|+|||||+..++.....+.. ++| ....+.|+.-+..+ ...+-...+.++
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~----~gg-------~~~~vlyi~~e~~~----~~~~l~~~~~~~- 165 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE----KGG-------LSGKAVYIDTEGTF----RWERIENMAKAL- 165 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG----GTC-------CSCEEEEEESSSCC----CHHHHHHHHHHT-
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc----cCC-------CCCeEEEEECCCCC----CHHHHHHHHHHh-
Confidence 56899999999999999999999988754211110 001 12345566544321 122222222221
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHH-HHHHHHHHHHh---hCCCEEEEeCCCCCCCH--------H-
Q psy10223 128 IGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSE-HRRVVIGTQLV---KDPVLLLLDEPTVNLDP--------L- 194 (606)
Q Consensus 128 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGe-rqRvsIa~aL~---~~p~llllDEPTsgLD~--------~- 194 (606)
+... +++++.+-+ .+..++.+ .+.+..++.++ .+|+++++|+.++-.+. .
T Consensus 166 ---g~~~-------~~~~~~l~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~ 228 (324)
T 2z43_A 166 ---GLDI-------DNVMNNIYY-------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAV 228 (324)
T ss_dssp ---TCCH-------HHHHHTEEE-------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHH
T ss_pred ---CCCH-------HHHhccEEE-------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHH
Confidence 1111 112221111 11223332 35677777777 67999999999875432 1
Q ss_pred ---HHHHHHHHHHHHHHhCCcEEEEEecC
Q psy10223 195 ---STYLIVSMLSSYAKRKSRAVLLTMEK 220 (606)
Q Consensus 195 ---~~~~i~~~L~~l~~~~g~tii~t~h~ 220 (606)
...++++.|++++++.+.+||++.|.
T Consensus 229 r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 229 RQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 23567777888888889999988653
No 184
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.01 E-value=2.6e-07 Score=92.61 Aligned_cols=64 Identities=17% Similarity=0.172 Sum_probs=46.7
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHH---cCCCCCCeeEEE--------ECCEeCCc----ccccCeEEEEc
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEII--------LDGTPMSP----QLFQTTCGYVN 105 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~---g~~~~~~~G~I~--------~~G~~~~~----~~~~~~i~yv~ 105 (606)
.++++.+ ++|++++|+|||||||||++|+|+ |... +++|.|. .+|.++.. ..+++.+++++
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~-~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL-LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE-EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc-CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 3455544 789999999999999999999999 8765 6789998 88887632 23456677777
Q ss_pred CCC
Q psy10223 106 HRT 108 (606)
Q Consensus 106 q~~ 108 (606)
|.+
T Consensus 94 ~~~ 96 (252)
T 4e22_A 94 VSQ 96 (252)
T ss_dssp EEE
T ss_pred ecC
Confidence 643
No 185
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.97 E-value=2e-06 Score=81.42 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=29.7
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEE
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL 87 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~ 87 (606)
.+|++++|+||||||||||++.|++..+....|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 3799999999999999999999999765224455544
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.92 E-value=1.8e-06 Score=93.74 Aligned_cols=70 Identities=13% Similarity=0.221 Sum_probs=50.2
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEE-EcCCeEEEecChh
Q psy10223 177 KDPVLLLLDEPTVNLDP-LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAY-LCLGDLIYAGPTR 247 (606)
Q Consensus 177 ~~p~llllDEPTsgLD~-~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~v-L~~G~~v~~G~~~ 247 (606)
.+|++|++||+..-.+. .++..+...+..+.+ .|+.+|+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 48999999999887664 677888899888764 5788888988876554444444433 4567777666653
No 187
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.91 E-value=2.5e-05 Score=81.99 Aligned_cols=44 Identities=14% Similarity=0.042 Sum_probs=33.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--CCcEEEEEecCC
Q psy10223 177 KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR--KSRAVLLTMEKP 221 (606)
Q Consensus 177 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~--~g~tii~t~h~~ 221 (606)
.+|.++++||+... |......+.+.+.+.... .+.++|+++|.+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 888888888887665431 367788888865
No 188
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.89 E-value=4.9e-05 Score=82.39 Aligned_cols=171 Identities=17% Similarity=0.196 Sum_probs=97.1
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
.-|+.+.+-+++|+++.|.|+||+|||||+..++.... ...| ..+.|+.-+ ++..+..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a-~~~g---------------~~vl~~slE------~~~~~l~ 245 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA-LKEG---------------VGVGIYSLE------MPAAQLT 245 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH-HTTC---------------CCEEEEESS------SCHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH-HhCC---------------CeEEEEECC------CCHHHHH
Confidence 34666666699999999999999999999988775321 0011 112332211 2222221
Q ss_pred HH--HHHccCC------CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCC
Q psy10223 121 YY--AAHLSIG------PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV--KDPVLLLLDEPTVN 190 (606)
Q Consensus 121 ~f--~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~--~~p~llllDEPTsg 190 (606)
.- +.....+ ..++..+ .+++.+.++.+.-.+..-....++|..+.+ +.++.+. .+++++++|..+.=
T Consensus 246 ~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~--~~~~~l~~~~~~~lIvID~l~~~ 322 (444)
T 2q6t_A 246 LRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPIYIDDTPDLTLMEVR--ARARRLVSQNQVGLIIIDYLQLM 322 (444)
T ss_dssp HHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCEEEECCTTCBHHHHH--HHHHHHHHHSCCCEEEEECGGGC
T ss_pred HHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEcChhhc
Confidence 11 1111000 0123322 233444444442222221223567777653 4455554 47999999998753
Q ss_pred CCH----------HHHHHHHHHHHHHHHhCCcEEEEEecCCcc------------------hHHhcCCeEEEEc
Q psy10223 191 LDP----------LSTYLIVSMLSSYAKRKSRAVLLTMEKPRS------------------DVLPFLDRTAYLC 236 (606)
Q Consensus 191 LD~----------~~~~~i~~~L~~l~~~~g~tii~t~h~~~~------------------~i~~~~D~v~vL~ 236 (606)
.+. ....++.+.|+.++++.+.+||+++|-... .+.+.+|.|+.|+
T Consensus 323 ~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 323 SGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp BCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred CCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 322 223578888999999889999998763210 2456788888875
No 189
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.89 E-value=7.4e-07 Score=89.48 Aligned_cols=40 Identities=33% Similarity=0.548 Sum_probs=36.0
Q ss_pred cceeeEEeeEEEEeC---CeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 38 QTALILKDISLEVRP---GEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~---Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.+++|+|+|+++++ |+.++|+|++||||||+.+.|++.+
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 345799999999999 9999999999999999999999864
No 190
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.84 E-value=2e-06 Score=82.67 Aligned_cols=50 Identities=30% Similarity=0.393 Sum_probs=40.2
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEE--EECCEeC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEI--ILDGTPM 92 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I--~~~G~~~ 92 (606)
...+..+...++|++++|+||||||||||++.|++.+. ..|.+ .++|.++
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~--~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY--QKGKLCYILDGDNV 64 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEecCchh
Confidence 34566667778999999999999999999999999864 34666 7777554
No 191
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.84 E-value=3.9e-06 Score=82.66 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=34.4
Q ss_pred EEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeC
Q psy10223 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM 92 (606)
Q Consensus 47 s~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~ 92 (606)
++..++|++++|.|+||||||||+++|+|. .|+|.+.+.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecCH
Confidence 334579999999999999999999999987 37788877654
No 192
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.83 E-value=5e-05 Score=79.87 Aligned_cols=58 Identities=9% Similarity=0.029 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy10223 161 LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTME 219 (606)
Q Consensus 161 LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h 219 (606)
.++.++++..+++..+.+|+++++.-..+..|..+ .+..+.++.+...+..++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999887774334445443 44566666665444467766654
No 193
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.81 E-value=8.2e-05 Score=75.52 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++.-++|.||+|+|||||++.|++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 357789999999999999999999864
No 194
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.76 E-value=3e-06 Score=87.23 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHhCC
Q psy10223 161 LTPSEHRRVVIGTQLV--KDPVLLLLDEPTVNLDPLS-TYLIVSMLSSYAKRKS 211 (606)
Q Consensus 161 LSgGerqRvsIa~aL~--~~p~llllDEPTsgLD~~~-~~~i~~~L~~l~~~~g 211 (606)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++..+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~ 147 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMN 147 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSC
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcC
Confidence 898886 5566666 68999998 7888876 6677888888876544
No 195
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.72 E-value=1.4e-05 Score=77.39 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=26.5
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
++|++++|+||||||||||++.|++..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999999999875
No 196
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.68 E-value=9.1e-06 Score=75.97 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=30.2
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM 92 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~ 92 (606)
.+|++++|+|+|||||||+++.|++.. |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccc
Confidence 469999999999999999999999864 5566665443
No 197
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.66 E-value=6.8e-06 Score=79.16 Aligned_cols=41 Identities=20% Similarity=0.119 Sum_probs=33.3
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~ 91 (606)
.++|++++|+|+||||||||++.|++.+. +..|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~-~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR-EQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh-hcCCeEEEeccC
Confidence 57899999999999999999999999764 345667665443
No 198
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.62 E-value=1.6e-05 Score=76.74 Aligned_cols=29 Identities=14% Similarity=0.410 Sum_probs=26.1
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
..+|++++|+||||||||||++.|.+..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999998754
No 199
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.59 E-value=2.8e-05 Score=74.78 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=26.7
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+++|++++|+|+||||||||++.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999999875
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.58 E-value=7.7e-05 Score=76.42 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=26.7
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.++++..++|.||+|+|||||.++|++...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 467899999999999999999999998653
No 201
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.57 E-value=1.5e-05 Score=90.93 Aligned_cols=45 Identities=27% Similarity=0.399 Sum_probs=33.1
Q ss_pred EEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-CCeeEEEECCEeC
Q psy10223 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-TTRGEIILDGTPM 92 (606)
Q Consensus 47 s~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~~~G~I~~~G~~~ 92 (606)
|+.+++|+.++|+|++|+|||||++.|++.... ...|+| .+|...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~ 48 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTT 48 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccc
Confidence 356788999999999999999999999976431 245777 555544
No 202
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.53 E-value=0.00036 Score=72.02 Aligned_cols=164 Identities=14% Similarity=0.090 Sum_probs=85.2
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEE-ECCEeCCcccc-cCeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII-LDGTPMSPQLF-QTTCGYVNHRTDLIPSLTVEQTLYYAAH 125 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~-~~G~~~~~~~~-~~~i~yv~q~~~~~~~lTV~e~l~f~~~ 125 (606)
+-+++|+++.|.||+|+|||||...++....-+ .|... ++|.... -. +..+.|+.-+..+ ...+-...+.+
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~-~~~~~~~~~~~~g--g~~~~~v~yi~~e~~~----~~~~l~~~~~~ 165 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNP-EFLFYDEEAVSKG--EVAQPKAVYIDTEGTF----RPERIMQMAEH 165 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHTTCG-GGEECCTTTSCTT--TTSSEEEEEEESSSCC----CHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHhcc-ccccccccccccC--CCCCceEEEEECCCCC----CHHHHHHHHHH
Confidence 568999999999999999999998877421101 11100 0111000 00 1356777654432 12222222222
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHH-HHHHHHHHHHh---hCCCEEEEeCCCCCCC--------H
Q psy10223 126 LSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSE-HRRVVIGTQLV---KDPVLLLLDEPTVNLD--------P 193 (606)
Q Consensus 126 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGe-rqRvsIa~aL~---~~p~llllDEPTsgLD--------~ 193 (606)
+. ... +++++.+-+ .+..+..+ .+-+..++.++ .+++++++|.-+.-.. .
T Consensus 166 ~g----~~~-------~~~~~~l~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~ 227 (322)
T 2i1q_A 166 AG----IDG-------QTVLDNTFV-------ARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKL 227 (322)
T ss_dssp HT----CCH-------HHHHHTEEE-------EECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSH
T ss_pred cC----CCH-------HHHhcCEEE-------EeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccH
Confidence 11 111 112221111 11122222 12344455555 4589999998875321 1
Q ss_pred H----HHHHHHHHHHHHHHhCCcEEEEEecCCcch----------------HHhcCCeEEEEcC
Q psy10223 194 L----STYLIVSMLSSYAKRKSRAVLLTMEKPRSD----------------VLPFLDRTAYLCL 237 (606)
Q Consensus 194 ~----~~~~i~~~L~~l~~~~g~tii~t~h~~~~~----------------i~~~~D~v~vL~~ 237 (606)
. ...++++.|+.++++.+.+||++.| .... +...+|-++.|+.
T Consensus 228 ~~r~~~~~~~~~~L~~la~~~~~~vi~~nq-~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 228 AERQQKLGRHMATLNKLADLFNCVVLVTNQ-VSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEEC-EECC-------CCEESSHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEECc-eeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEe
Confidence 1 2356777788888888999888755 2221 4456677777764
No 203
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.52 E-value=1.7e-05 Score=88.28 Aligned_cols=43 Identities=28% Similarity=0.412 Sum_probs=35.8
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCee-EEE-ECCEeC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG-EII-LDGTPM 92 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G-~I~-~~G~~~ 92 (606)
.+++|++++|+|+||||||||+|+|++++. +.+| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~-~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM-EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH-TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc-ccCCceEEEECCcHH
Confidence 478999999999999999999999999886 4555 674 777543
No 204
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.50 E-value=0.00016 Score=76.12 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=25.4
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
+=+++|+++.|.|++|+|||||...++..
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999999877743
No 205
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.49 E-value=0.0002 Score=77.29 Aligned_cols=112 Identities=12% Similarity=0.108 Sum_probs=64.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ 131 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~ 131 (606)
++.+++++|+|||||||++..|++.+. ...++|.+-+.+.. | + ...+.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-~~G~kVllv~~D~~----r-------------~--~a~eqL~---------- 145 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-KRGYKVGLVAADVY----R-------------P--AAYDQLL---------- 145 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCS----C-------------H--HHHHHHH----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEecCcc----c-------------h--hHHHHHH----------
Confidence 589999999999999999999998764 33344544332211 0 0 1112221
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-C--CCHHHHHHHHHHHHHH
Q psy10223 132 VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV-N--LDPLSTYLIVSMLSSY 206 (606)
Q Consensus 132 ~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs-g--LD~~~~~~i~~~L~~l 206 (606)
.+-+..++.-... ..+...-+-.+-+++.+...+++++++|+|-. + .|+....++.++++..
T Consensus 146 -----------~~~~~~gv~~~~~--~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~ 210 (433)
T 3kl4_A 146 -----------QLGNQIGVQVYGE--PNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL 210 (433)
T ss_dssp -----------HHHHTTTCCEECC--TTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH
T ss_pred -----------HHHHhcCCceeec--cccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh
Confidence 1222223321110 01111122223345555567999999999974 4 7888887777766655
No 206
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.49 E-value=3.6e-05 Score=71.55 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.|++++|+|+||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999764
No 207
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.46 E-value=0.00038 Score=75.48 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=28.4
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
-|+.+.+=+++|+++.|.|+||+|||||+--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4555555689999999999999999999877764
No 208
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.45 E-value=8e-06 Score=84.85 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=33.9
Q ss_pred ceeeEEeeEEEEeCCe------EEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 39 TALILKDISLEVRPGE------VLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge------~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.++.|++++..+.+++ +++|+||||||||||+++|++++.
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3556777777777776 999999999999999999998764
No 209
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.41 E-value=0.00037 Score=69.21 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=25.0
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.++++++..++| ++|.||||+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 355556656666 88999999999999999998654
No 210
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.39 E-value=7.9e-05 Score=68.49 Aligned_cols=29 Identities=38% Similarity=0.713 Sum_probs=23.9
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVIS 74 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~ 74 (606)
+.++.+.+| +.+|+|||||||||+|++|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344555555 99999999999999999986
No 211
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.36 E-value=2.7e-05 Score=81.30 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++..++|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999765
No 212
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.33 E-value=4.1e-05 Score=71.64 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 213
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.32 E-value=9.5e-05 Score=86.09 Aligned_cols=30 Identities=20% Similarity=0.485 Sum_probs=28.0
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.+++|+.++|.||||+|||||+++|++...
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999999999864
No 214
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.31 E-value=0.0001 Score=70.44 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
..+.|.||+|+|||||++.|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998754
No 215
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.28 E-value=0.0034 Score=68.86 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=87.7
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLY 121 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~ 121 (606)
-|+.+.+=+++|+++.|.|+||+|||||+--++-... ...| ..+.|+.= .++..+.+.
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a-~~~g---------------~~vl~~s~------E~s~~~l~~ 288 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWG-TAMG---------------KKVGLAML------EESVEETAE 288 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHT-TTSC---------------CCEEEEES------SSCHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHH-HhcC---------------CcEEEEec------cCCHHHHHH
Confidence 3555544589999999999999999999877663221 1101 12333322 123333332
Q ss_pred H--HHHccCCCCCCHHH-----HHHHHHHHHHHc-CCch-hhcccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCC
Q psy10223 122 Y--AAHLSIGPQVSRYV-----RNARIRQVLADL-ALSN-VARRNISELTPSEHRRVVIGTQLV--KDPVLLLLDEPTVN 190 (606)
Q Consensus 122 f--~~~~~~~~~~~~~~-----~~~~v~~~l~~l-gL~~-~~~~~v~~LSgGerqRvsIa~aL~--~~p~llllDEPTsg 190 (606)
- +.....+....+.. ..+...++.+.+ .-.+ ..+....+++-.+ -++.++.+. .+|+++++|--+.
T Consensus 289 r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~--i~~~i~~~~~~~~~~lvVID~l~~- 365 (503)
T 1q57_A 289 DLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDR--LLAKLAYMRSGLGCDVIILDHISI- 365 (503)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHH--HHHHHHHHHHTTCCSEEEEECTTC-
T ss_pred HHHHHHcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHH--HHHHHHHHHHhcCCCEEEEccchh-
Confidence 1 11111110000000 001112222222 1011 0111122244433 334444443 4699999996543
Q ss_pred C-------CH-HHHHHHHHHHHHHHHhCCcEEEEEecCCc---------------------chHHhcCCeEEEEcC
Q psy10223 191 L-------DP-LSTYLIVSMLSSYAKRKSRAVLLTMEKPR---------------------SDVLPFLDRTAYLCL 237 (606)
Q Consensus 191 L-------D~-~~~~~i~~~L~~l~~~~g~tii~t~h~~~---------------------~~i~~~~D~v~vL~~ 237 (606)
+ +. ....++.+.|+.++++.+.+||+++|... ..+.+.+|-|+.|+.
T Consensus 366 l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r 441 (503)
T 1q57_A 366 VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 441 (503)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEE
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhhecCcEEEEEEe
Confidence 2 22 23456888899999989999999877542 124567899998863
No 216
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.25 E-value=0.00011 Score=79.16 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=27.9
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+.+.+|++++|+|||||||||||++|++...
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4467899999999999999999999999775
No 217
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.22 E-value=0.00023 Score=73.28 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=34.1
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcc
Q psy10223 176 VKDPVLLLLDEPTV-NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRS 223 (606)
Q Consensus 176 ~~~p~llllDEPTs-gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~ 223 (606)
..++++|++||+-. ..|..+...+...+..+.+ .+..+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCChH
Confidence 35699999999865 3344778888888888765 46667777766654
No 218
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.21 E-value=1.9e-05 Score=82.76 Aligned_cols=51 Identities=20% Similarity=0.191 Sum_probs=41.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCE
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT 90 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~ 90 (606)
.+.+++++++.+++|.+++|+|+||+|||||++.|++... +..|+|.+-+.
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~-~~~~~v~v~~~ 92 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI-REGLKVAVIAV 92 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEE
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEee
Confidence 3467889999999999999999999999999999998764 33455555443
No 219
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.17 E-value=0.00013 Score=71.91 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=27.1
Q ss_pred eEEeeEEEEe---CCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 42 ILKDISLEVR---PGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 42 iL~~vs~~v~---~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
-|.++|+.+. +|.+++|.|++||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4778888877 999999999999999999999998765
No 220
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.17 E-value=4.8e-05 Score=84.64 Aligned_cols=49 Identities=24% Similarity=0.416 Sum_probs=40.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCE
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT 90 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~ 90 (606)
..+++++++.+ +|+.++|+||||+|||||+++|++... +..|.|.++|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-~~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-CEEEEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-CCeEEEEeccc
Confidence 34677778777 899999999999999999999999875 55688877664
No 221
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.10 E-value=9.7e-05 Score=77.58 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=32.2
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM 92 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~ 92 (606)
+++.+++|+|+||||||||+|.|+|... +..|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-ERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh-hcCCeEEEEeecC
Confidence 4688999999999999999999998764 3456666655443
No 222
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.08 E-value=0.00049 Score=63.91 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 223
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.08 E-value=0.0005 Score=66.56 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++..+.|.||+|+|||||++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998654
No 224
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.06 E-value=0.00057 Score=68.74 Aligned_cols=29 Identities=21% Similarity=0.513 Sum_probs=24.9
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+.++.-+.|.||+|+|||||++.|++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35677799999999999999999998653
No 225
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.06 E-value=0.00043 Score=74.77 Aligned_cols=38 Identities=24% Similarity=0.488 Sum_probs=30.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC-----------CCCeeEEEECCEeC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSS-----------GTTRGEIILDGTPM 92 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~-----------~~~~G~I~~~G~~~ 92 (606)
.++|+|+||+|||||+|.|+|... .+..|.+.++|.++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 699999999999999999998742 13458899998754
No 226
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.01 E-value=0.00051 Score=64.82 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=20.9
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998888 5689999999999999999974
No 227
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.01 E-value=7.6e-05 Score=73.50 Aligned_cols=67 Identities=12% Similarity=0.084 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCe
Q psy10223 162 TPSEHRRVVIGTQLVKDPVLLLLDEPTV-NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDR 231 (606)
Q Consensus 162 SgGerqRvsIa~aL~~~p~llllDEPTs-gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~ 231 (606)
+.|...+.. ...+.+-+++++||.-. ++|.......++.+..... .-+++++|...+.+.+.+++++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcCC
Confidence 445554442 33578999999999965 7888776555555544332 2456777655555555555543
No 228
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.00 E-value=0.00034 Score=65.47 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=29.2
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCCCCee--EEEECCE
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG--EIILDGT 90 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G--~I~~~G~ 90 (606)
++|++++|+|++||||||+++.|++.+. + .| .|.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~-~-~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV-C-HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-H-TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh-h-CCCcEEEECCh
Confidence 4799999999999999999999998753 1 23 4555543
No 229
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.98 E-value=0.00035 Score=67.76 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=37.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC--CCCeeEEEE--------CCEeCCc----ccccCeEEEEcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSS--GTTRGEIIL--------DGTPMSP----QLFQTTCGYVNHR 107 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~~~~G~I~~--------~G~~~~~----~~~~~~i~yv~q~ 107 (606)
.+.+++|+|||||||||+.+.|++.+. ..+.|++.. +|.++.. ..+++.+++++|+
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 357899999999999999999998642 134577665 5655432 1234456666654
No 230
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.97 E-value=0.00036 Score=67.33 Aligned_cols=29 Identities=38% Similarity=0.713 Sum_probs=23.8
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVIS 74 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~ 74 (606)
+.++.+.+| +.+|+|||||||||+|++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 344555565 99999999999999999886
No 231
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.96 E-value=0.0042 Score=60.85 Aligned_cols=24 Identities=29% Similarity=0.417 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
-++|+|++|+|||||++.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 479999999999999999999754
No 232
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.89 E-value=0.00039 Score=65.62 Aligned_cols=32 Identities=28% Similarity=0.454 Sum_probs=26.4
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788889999999999999999999999875
No 233
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.89 E-value=0.0002 Score=69.11 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=33.1
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCee--EEEECCE
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG--EIILDGT 90 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G--~I~~~G~ 90 (606)
.+++|.+++|.|++||||||+.+.|++.+. +..| .+.++|.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-~~~g~~~~~~~~d 63 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV-RDRRVHAYRLDGD 63 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH-HHHCCCEEEECHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc-cccCCcEEEECCh
Confidence 357899999999999999999999998764 3456 6777643
No 234
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.86 E-value=0.0066 Score=63.97 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=24.3
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
-+++|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 589999999999999999999877764
No 235
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.86 E-value=0.0037 Score=61.62 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++..-+.|.||+|+|||||.+.|+...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568999999999999999998754
No 236
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.82 E-value=0.0005 Score=65.92 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=26.0
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
..+|.+++|+||||||||||.+.|+...+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56899999999999999999999987653
No 237
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.81 E-value=0.0013 Score=64.50 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=42.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEec---------CCcchHHhcCCeEEEEc
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTME---------KPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h---------~~~~~i~~~~D~v~vL~ 236 (606)
+++++++||--. |+. +.++.++.+++. |..||++-| .++.++..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~-gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAEN-GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHT-TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhC-CCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 355566777764 899999988 67788999999999875
No 238
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.80 E-value=5.7e-05 Score=79.73 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=29.7
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG 89 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G 89 (606)
.++.+++++++.| +|+|++|+|||||++.|.+... ...+.+..++
T Consensus 28 ~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~-~~~~~~~~~~ 72 (361)
T 2qag_A 28 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL-YPERVIPGAA 72 (361)
T ss_dssp HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----------
T ss_pred CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC-CCCCcccCCC
Confidence 3456788888877 9999999999999999988643 3334443333
No 239
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.78 E-value=0.00087 Score=65.50 Aligned_cols=61 Identities=13% Similarity=0.014 Sum_probs=42.7
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcc---------hHHhcCCeEEEEc
Q psy10223 176 VKDPVLLLLDEPTV----NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRS---------DVLPFLDRTAYLC 236 (606)
Q Consensus 176 ~~~p~llllDEPTs----gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~---------~i~~~~D~v~vL~ 236 (606)
-.+|++++.|.-+. .-|.....++...|+.++++.+.+++++.|.... .+...+|-|+.|+
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 45788999986432 1245566778889999999899999998765321 1345688888775
No 240
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.77 E-value=0.00022 Score=67.88 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=30.6
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 57888888888885 689999999999999999864
No 241
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.68 E-value=0.00071 Score=64.51 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q psy10223 55 VLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g 75 (606)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 242
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.62 E-value=0.0022 Score=58.79 Aligned_cols=23 Identities=17% Similarity=0.505 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|+||+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 243
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.59 E-value=0.0077 Score=63.04 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++..-++|.||+|+|||||.+.|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456679999999999999999999764
No 244
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.53 E-value=0.0012 Score=61.80 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.+|.+++|.|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999854
No 245
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.52 E-value=0.0012 Score=62.00 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=25.9
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.++|.+++|.|++||||||+.+.|+..+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999998754
No 246
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.50 E-value=0.00052 Score=73.86 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=38.6
Q ss_pred EeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeC
Q psy10223 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM 92 (606)
Q Consensus 44 ~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~ 92 (606)
+++++. +|++++++|++||||||++..|++.+. ...|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEeeccc
Confidence 577777 899999999999999999999999876 4567787766554
No 247
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.49 E-value=0.0052 Score=63.52 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=25.5
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 6688999999999999999999998875
No 248
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.46 E-value=0.0016 Score=68.77 Aligned_cols=31 Identities=26% Similarity=0.605 Sum_probs=26.9
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHH
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVIS 74 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~ 74 (606)
+++..+++.+| +.+|.|+|||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46677777776 99999999999999999986
No 249
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.45 E-value=0.00025 Score=74.35 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=33.0
Q ss_pred eeEEeeEEEEeCCeE--EEEEcCCCccHHHHHHHHHcCC
Q psy10223 41 LILKDISLEVRPGEV--LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~--~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467888888899998 9999999999999999999754
No 250
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.45 E-value=0.0018 Score=61.09 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=28.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC--CCCeeEEEECCEe
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS--GTTRGEIILDGTP 91 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~--~~~~G~I~~~G~~ 91 (606)
-.+++|.|++|||||||++.|.+.+. +..-|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 35789999999999999999987642 2234777765543
No 251
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.43 E-value=0.0045 Score=76.62 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=25.7
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
=+++|+++.|.||||+|||||+..++..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 4999999999999999999999988764
No 252
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.42 E-value=0.002 Score=67.02 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998754
No 253
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.41 E-value=0.0013 Score=70.02 Aligned_cols=44 Identities=9% Similarity=0.196 Sum_probs=33.2
Q ss_pred EEEEeCCeEEEEEcCCCccHHHHHHHHHcCC----------CCCCeeEEEECCE
Q psy10223 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRS----------SGTTRGEIILDGT 90 (606)
Q Consensus 47 s~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~----------~~~~~G~I~~~G~ 90 (606)
-+.++.|..++|+|+||+|||||++.|+|.. ..+..|.+.+.+.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3456788899999999999999999999872 1145677777653
No 254
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.41 E-value=0.0013 Score=62.78 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
..+++|.|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
No 255
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.39 E-value=0.014 Score=60.21 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHH--h--hCCCEEEEeCCCCCC-----CH----------HHHHHHHHHHHH---HHHhCCcEEEEEecC
Q psy10223 164 SEHRRVVIGTQL--V--KDPVLLLLDEPTVNL-----DP----------LSTYLIVSMLSS---YAKRKSRAVLLTMEK 220 (606)
Q Consensus 164 GerqRvsIa~aL--~--~~p~llllDEPTsgL-----D~----------~~~~~i~~~L~~---l~~~~g~tii~t~h~ 220 (606)
+|+..+.++.++ + .+|++++.|--++=. +. ..++.+-+.|++ ++++.+.++|++-|-
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 565556666666 3 369999999776542 11 123344444544 577889999998663
No 256
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.37 E-value=0.00029 Score=73.16 Aligned_cols=40 Identities=20% Similarity=0.377 Sum_probs=35.6
Q ss_pred ceeeEEeeEEEEeCCeE--EEEEcCCCccHHHHHHHHHcCCC
Q psy10223 39 TALILKDISLEVRPGEV--LAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~--~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
...+++.++..+++|++ +++.||||+||||+++++++...
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 35688888899999999 99999999999999999998754
No 257
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.32 E-value=0.0019 Score=59.26 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 258
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.29 E-value=0.0022 Score=59.50 Aligned_cols=26 Identities=12% Similarity=0.316 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997654
No 259
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.29 E-value=0.036 Score=57.05 Aligned_cols=28 Identities=21% Similarity=0.423 Sum_probs=24.3
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
..+..-+.|.||+|+|||||.+.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566779999999999999999999865
No 260
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.27 E-value=0.0094 Score=53.78 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=30.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcch
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSD 224 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~ 224 (606)
+..++++||.- .|++..+..+.+.|... ..+..+|+++..+.++
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~--~~~~~~I~~t~~~~~~ 119 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE--HRPFRLIGIGDTSLVE 119 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS--SCSSCEEEEESSCHHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc--CCCEEEEEECCcCHHH
Confidence 45689999984 68888888888888432 2345677777766543
No 261
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.26 E-value=0.0016 Score=64.71 Aligned_cols=45 Identities=16% Similarity=0.331 Sum_probs=33.8
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCE
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT 90 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~ 90 (606)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+. .+.+.+++.
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D 66 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGD 66 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecH
Confidence 344444 567889999999999999999999998754 144566653
No 262
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.25 E-value=0.00038 Score=71.44 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=35.7
Q ss_pred Ee-eEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe
Q psy10223 44 KD-ISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91 (606)
Q Consensus 44 ~~-vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~ 91 (606)
++ +++..+ |++++++|+||+||||++..|++... ...++|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-~~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-KKGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-HTTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEecC
Confidence 45 777766 99999999999999999999998765 344566654433
No 263
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.22 E-value=0.0011 Score=70.14 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=31.2
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
|+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999998753
No 264
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.21 E-value=0.0022 Score=62.88 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=24.6
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35678999999999999999999999743
No 265
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.13 E-value=0.0024 Score=59.87 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998643
No 266
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.12 E-value=0.0029 Score=59.09 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998643
No 267
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.11 E-value=0.0055 Score=67.11 Aligned_cols=28 Identities=21% Similarity=0.525 Sum_probs=23.7
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++..-++|.||+|+|||+|.+.|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455669999999999999999998764
No 268
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.05 E-value=0.059 Score=66.87 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=27.4
Q ss_pred eEEeeE--EEEeCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 42 ILKDIS--LEVRPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 42 iL~~vs--~~v~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
-|+.+- +=+++|+++.|.||+|+|||||.-.++.
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 355543 3589999999999999999999877654
No 269
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.04 E-value=0.0027 Score=59.27 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999863
No 270
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.98 E-value=0.012 Score=73.72 Aligned_cols=76 Identities=8% Similarity=0.071 Sum_probs=48.1
Q ss_pred HHHHHHHh--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HHhCCcEEEEEecCCcc-------
Q psy10223 169 VVIGTQLV--KDPVLLLLDEPTVNLD-P------------LSTYLIVSMLSSY---AKRKSRAVLLTMEKPRS------- 223 (606)
Q Consensus 169 vsIa~aL~--~~p~llllDEPTsgLD-~------------~~~~~i~~~L~~l---~~~~g~tii~t~h~~~~------- 223 (606)
+.+++.++ .+|++++.|.-++=.. + ..+.++.+.|+++ +++.+.++|++.|....
T Consensus 450 l~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~ 529 (2050)
T 3cmu_A 450 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 529 (2050)
T ss_dssp HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSC
T ss_pred HHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCC
Confidence 45555554 4799999998876542 1 1233455555555 67889999988653211
Q ss_pred --------hHHhcCCeEEEEcCCeEEEec
Q psy10223 224 --------DVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 224 --------~i~~~~D~v~vL~~G~~v~~G 244 (606)
.+...+|-++.|+..+....|
T Consensus 530 p~~psGg~ale~~ADv~l~L~R~~~~~~g 558 (2050)
T 3cmu_A 530 PETTTGGNALKFYASVRLDIRRIGAVKEG 558 (2050)
T ss_dssp CEECSSHHHHHHHEEEEEEEEEEEEEEET
T ss_pred CcCCCCcchhhhhCCEEEEEEecccccCC
Confidence 256678889988776544333
No 271
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.98 E-value=0.0034 Score=57.30 Aligned_cols=19 Identities=32% Similarity=0.639 Sum_probs=18.2
Q ss_pred EEEEEcCCCccHHHHHHHH
Q psy10223 55 VLAVLGSKGSGKRALLEVI 73 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L 73 (606)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 272
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.94 E-value=0.0036 Score=61.84 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998653
No 273
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.92 E-value=0.0036 Score=62.36 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999754
No 274
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.89 E-value=0.0042 Score=57.98 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
No 275
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.86 E-value=0.0047 Score=58.66 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 577899999999999999999987553
No 276
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.86 E-value=0.0038 Score=58.20 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.++..+.|.|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999854
No 277
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.81 E-value=0.0049 Score=56.94 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q psy10223 54 EVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g 75 (606)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 278
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.80 E-value=0.005 Score=58.29 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+|-+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367889999999999999999999765
No 279
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.80 E-value=0.0051 Score=59.25 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 280
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.78 E-value=0.0048 Score=58.24 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999997543
No 281
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.70 E-value=0.0054 Score=58.42 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|.+++|.|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
No 282
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.70 E-value=0.0051 Score=57.73 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999998643
No 283
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.67 E-value=0.0053 Score=56.97 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998654
No 284
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.63 E-value=0.011 Score=55.32 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999877654
No 285
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.62 E-value=0.0065 Score=56.75 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++.+++|.|++||||||+.+.|+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999854
No 286
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.62 E-value=0.0055 Score=62.26 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=28.0
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG 89 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G 89 (606)
.+|.++.|.|||||||||+.+.|+...+ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEec
Confidence 4578999999999999999999986543 14455554
No 287
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.58 E-value=0.0062 Score=58.06 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=23.7
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.++|-+++|.|++||||||+.+.|+..
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999864
No 288
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.56 E-value=0.006 Score=58.09 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999875543
No 289
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.55 E-value=0.0067 Score=57.26 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999975
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.53 E-value=0.0063 Score=56.74 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 291
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.52 E-value=0.0036 Score=59.76 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
No 292
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.51 E-value=0.018 Score=54.97 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=40.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEec---------CCcchHHhcCCeEEEEc
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTME---------KPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h---------~~~~~i~~~~D~v~vL~ 236 (606)
+.+++++||--- +|+. .++.|+.+++. |..||++-+ .++.++.+++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999544 6643 35567777765 889999877 66778999999998775
No 293
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.46 E-value=0.0079 Score=58.05 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|-.++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998653
No 294
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.38 E-value=0.0065 Score=57.15 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=24.0
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++++.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457789999999999999999998643
No 295
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.35 E-value=0.0071 Score=60.58 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999874
No 296
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.24 E-value=0.0091 Score=57.95 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=22.3
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998643
No 297
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.23 E-value=0.0069 Score=56.23 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=18.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
No 298
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.22 E-value=0.0086 Score=54.03 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
No 299
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.22 E-value=0.074 Score=56.03 Aligned_cols=27 Identities=30% Similarity=0.566 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
++.-++|.||+|+|||+|.+.|+....
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 466899999999999999999987643
No 300
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.18 E-value=0.01 Score=53.71 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 301
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.17 E-value=0.01 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37999999999999999999754
No 302
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.16 E-value=0.01 Score=55.66 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999998654
No 303
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.15 E-value=0.01 Score=55.64 Aligned_cols=24 Identities=38% Similarity=0.464 Sum_probs=21.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+++|.|++|||||||++.|...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 378999999999999999988754
No 304
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.15 E-value=0.012 Score=55.94 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+-+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998643
No 305
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.0093 Score=55.59 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
=.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
No 306
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.13 E-value=0.0098 Score=53.40 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
No 307
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.10 E-value=0.0084 Score=54.18 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||++.+.|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 7899999999999999998754
No 308
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.09 E-value=0.011 Score=56.64 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999754
No 309
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.07 E-value=0.01 Score=53.17 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999764
No 310
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.07 E-value=0.01 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
No 311
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.05 E-value=0.011 Score=53.45 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998753
No 312
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.05 E-value=0.012 Score=53.96 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++++|.|++||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998643
No 313
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.05 E-value=0.0097 Score=53.26 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++++|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7999999999999999998753
No 314
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.03 E-value=0.011 Score=55.97 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 315
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.03 E-value=0.0066 Score=64.22 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEE
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL 87 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~ 87 (606)
.+..++|+|++|||||||++.|.+... ...+.|.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-MQGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-HCCCEEEE
Confidence 567899999999999999999987543 23355554
No 316
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.02 E-value=0.035 Score=53.92 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=42.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEec---------CCcchHHhcCCeEEEEc
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTME---------KPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h---------~~~~~i~~~~D~v~vL~ 236 (606)
+.+++++||--- ||.. .++.|+.+++. |..||++-. .++..+..++|.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~-~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANR-GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhC-CCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999866 6643 23667777664 889999988 78889999999999885
No 317
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.02 E-value=0.013 Score=58.39 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.++.++.|.|++||||||+.+.|+..
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999865
No 318
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.01 E-value=0.011 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999998764
No 319
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.01 E-value=0.012 Score=54.88 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999998654
No 320
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.00 E-value=0.017 Score=60.77 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC----------CCCeeEEEECC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS----------GTTRGEIILDG 89 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~----------~~~~G~I~~~G 89 (606)
|-.++|+|.||+|||||++.|++... .+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998321 13457777765
No 321
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.97 E-value=0.011 Score=53.40 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999865
No 322
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.96 E-value=0.011 Score=53.23 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 323
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.96 E-value=0.013 Score=56.30 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|.|++||||||+.+.|+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997543
No 324
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.94 E-value=0.011 Score=54.11 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 325
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.94 E-value=0.011 Score=53.50 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999998754
No 326
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.93 E-value=0.012 Score=53.79 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||++.+.+..
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7999999999999999998753
No 327
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.93 E-value=0.011 Score=54.21 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998643
No 328
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.93 E-value=0.012 Score=53.05 Aligned_cols=21 Identities=48% Similarity=0.582 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|++|+|||||++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999874
No 329
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.92 E-value=0.033 Score=69.96 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=29.5
Q ss_pred EEeeEE--EEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 43 LKDISL--EVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 43 L~~vs~--~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
|+.+-+ =+++|+++.|-|+||+|||||+..++...
T Consensus 720 LD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 555553 69999999999999999999999888643
No 330
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.90 E-value=0.014 Score=55.29 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998543
No 331
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.89 E-value=0.014 Score=56.86 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=24.3
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+++..++.|+|||||||+|..+.|+-.+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566789999999999999999998543
No 332
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.87 E-value=0.012 Score=53.70 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 333
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.87 E-value=0.012 Score=56.94 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44578999999999999999998643
No 334
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.86 E-value=0.012 Score=54.96 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999763
No 335
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.85 E-value=0.015 Score=53.19 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998643
No 336
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.85 E-value=0.014 Score=54.23 Aligned_cols=24 Identities=42% Similarity=0.505 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
..+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999854
No 337
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.84 E-value=0.013 Score=57.93 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
-++|+|++|+|||||++.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 479999999999999999998653
No 338
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.83 E-value=0.017 Score=52.82 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.-.++|+|++|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999998753
No 339
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.83 E-value=0.012 Score=54.91 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998643
No 340
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.82 E-value=0.0076 Score=59.14 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=20.1
Q ss_pred eCCeE-EEEEcCCCccHHHHHHHHHcC
Q psy10223 51 RPGEV-LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 51 ~~Ge~-~~IlG~nGsGKSTLLk~L~g~ 76 (606)
+.|++ +.+.|++|+||||++-.++..
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHH
Confidence 45666 777899999999996666544
No 341
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.78 E-value=0.013 Score=53.62 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999875
No 342
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.77 E-value=0.011 Score=54.83 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 343
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.75 E-value=0.014 Score=58.78 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
No 344
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.75 E-value=0.014 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 345
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.74 E-value=0.017 Score=57.03 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++-.++|.||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999854
No 346
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.74 E-value=0.014 Score=54.24 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999999763
No 347
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.73 E-value=0.016 Score=53.01 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|++|+|||||++.+.+.
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 799999999999999999875
No 348
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.72 E-value=0.014 Score=53.76 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 349
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.72 E-value=0.013 Score=54.28 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
No 350
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.71 E-value=0.013 Score=54.08 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999753
No 351
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.67 E-value=0.019 Score=52.77 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 445778999999999999999998654
No 352
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.67 E-value=0.015 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999764
No 353
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.63 E-value=0.015 Score=53.68 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 354
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.63 E-value=0.11 Score=50.94 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=42.7
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecC---------CcchHHhcCCeEEEEc
Q psy10223 177 KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEK---------PRSDVLPFLDRTAYLC 236 (606)
Q Consensus 177 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~---------~~~~i~~~~D~v~vL~ 236 (606)
.+.+++++||----.| +.+.++.+++ .|..||++-+. ++.++..++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999977654 4555555554 68999999998 8899999999999875
No 355
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.62 E-value=0.03 Score=57.61 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=31.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
...+++....+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 46788887777 8999999999999999999998875
No 356
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.61 E-value=0.015 Score=54.16 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
No 357
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.58 E-value=0.016 Score=52.12 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999764
No 358
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.55 E-value=0.018 Score=58.18 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
...++|.||+|+||||+.+.|++...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 36899999999999999999998754
No 359
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.54 E-value=0.019 Score=53.31 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
++|+|++|+|||||++.+.|...
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHhhcc
Confidence 68999999999999999998754
No 360
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.53 E-value=0.017 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998754
No 361
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.53 E-value=0.016 Score=52.90 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
No 362
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.49 E-value=0.017 Score=52.82 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 363
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.49 E-value=0.018 Score=55.47 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+|-.++|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999998643
No 364
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.49 E-value=0.017 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999998753
No 365
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.46 E-value=0.011 Score=54.45 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q psy10223 54 EVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g 75 (606)
=-++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999874
No 366
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.46 E-value=0.018 Score=52.73 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 367
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.43 E-value=0.02 Score=58.60 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.| .++|+|++|+|||||++.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 345 58999999999999999999864
No 368
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.41 E-value=0.021 Score=55.41 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999854
No 369
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.39 E-value=0.019 Score=53.36 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 370
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.38 E-value=0.021 Score=55.10 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++.|+|||||||+|.-+.|+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998543
No 371
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.36 E-value=0.022 Score=54.37 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.-+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999999864
No 372
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.35 E-value=0.021 Score=56.43 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998744
No 373
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.34 E-value=0.018 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 374
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.33 E-value=0.022 Score=58.32 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999864
No 375
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.31 E-value=0.019 Score=54.67 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999764
No 376
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.31 E-value=0.02 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 377
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.29 E-value=0.037 Score=53.26 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=28.9
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
..++..-.. ..|..++|+||+|||||||...|+.+.
T Consensus 23 ~~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 456665554 468899999999999999999998653
No 378
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.27 E-value=0.02 Score=53.69 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999865
No 379
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.26 E-value=0.02 Score=57.07 Aligned_cols=23 Identities=17% Similarity=0.431 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999863
No 380
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.26 E-value=0.02 Score=52.88 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.=-++|+|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998753
No 381
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.25 E-value=0.021 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998754
No 382
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.23 E-value=0.018 Score=57.77 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||++.|.+..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998753
No 383
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.22 E-value=0.021 Score=53.09 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||++.+.+..
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998753
No 384
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.22 E-value=0.02 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999874
No 385
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.18 E-value=0.023 Score=54.52 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999864
No 386
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.18 E-value=0.022 Score=52.41 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999865
No 387
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.17 E-value=0.02 Score=53.02 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999875
No 388
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.16 E-value=0.021 Score=53.43 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
No 389
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.16 E-value=0.022 Score=56.31 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 390
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.15 E-value=0.024 Score=53.25 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
No 391
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.14 E-value=0.023 Score=52.22 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
No 392
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.14 E-value=0.024 Score=52.04 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 346678999999999999999998654
No 393
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.14 E-value=0.028 Score=54.82 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+..+.|+|++||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998653
No 394
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.12 E-value=0.04 Score=57.21 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.5
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+++.+++|+||+|||||||...|+..+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567999999999999999999997654
No 395
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.11 E-value=0.023 Score=57.76 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|||||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 396
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.09 E-value=0.018 Score=54.35 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4799999999999999999764
No 397
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.06 E-value=0.024 Score=52.67 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
No 398
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.05 E-value=0.022 Score=59.98 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|+||+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999975
No 399
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.03 E-value=0.022 Score=53.61 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999754
No 400
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.02 E-value=0.025 Score=57.12 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHc
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999983
No 401
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.01 E-value=0.024 Score=55.69 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=21.6
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
...+|-++.|.|++||||||+.+.|+..+
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999998654
No 402
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.00 E-value=0.028 Score=56.73 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.++.|.|+|||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999863
No 403
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.97 E-value=0.024 Score=52.09 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999853
No 404
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.96 E-value=0.027 Score=56.15 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
No 405
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.95 E-value=0.026 Score=52.33 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
No 406
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.95 E-value=0.016 Score=55.44 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 407
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.95 E-value=0.024 Score=52.88 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 408
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.95 E-value=0.024 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.653 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
No 409
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.95 E-value=0.026 Score=52.64 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
No 410
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.94 E-value=0.026 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
No 411
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.94 E-value=0.026 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 412
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.93 E-value=0.026 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999865
No 413
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.93 E-value=0.026 Score=52.53 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 414
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.91 E-value=0.024 Score=53.45 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 415
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.91 E-value=0.026 Score=53.89 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-.++|+|++|+|||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999865
No 416
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.87 E-value=0.027 Score=52.97 Aligned_cols=22 Identities=23% Similarity=0.524 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999863
No 417
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.87 E-value=0.027 Score=52.69 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 418
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.85 E-value=0.049 Score=63.68 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
..+.|.||+|+|||+|.+.|+....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999997653
No 419
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.85 E-value=0.027 Score=56.59 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|||||||++.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 420
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.83 E-value=0.028 Score=53.12 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
=-++|+|++|+|||||++.+.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
No 421
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.83 E-value=0.031 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999754
No 422
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.82 E-value=0.028 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 423
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.82 E-value=0.021 Score=53.13 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 424
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.82 E-value=0.025 Score=52.28 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 425
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.81 E-value=0.028 Score=52.82 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=21.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
=-++|+|++|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 357999999999999999998754
No 426
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.80 E-value=0.027 Score=52.45 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 427
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.79 E-value=0.024 Score=51.85 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999875
No 428
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.78 E-value=0.029 Score=59.99 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.+.+++.|+|+|||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999999999754
No 429
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.73 E-value=0.038 Score=53.57 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-+|-++.+.|++||||||+.+.|+..+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998654
No 430
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.72 E-value=0.029 Score=54.20 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.++|+|++|+|||||++.+.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 431
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.71 E-value=0.027 Score=56.60 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 432
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.70 E-value=0.037 Score=52.64 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=29.6
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q psy10223 177 KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPR 222 (606)
Q Consensus 177 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~ 222 (606)
.+|.++++||.-. ||......+.+.+.+. ..+..+|++++.+.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 4678999999765 7887777777666542 23566777776543
No 433
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.69 E-value=0.028 Score=53.44 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999998864
No 434
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.64 E-value=0.029 Score=53.12 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 435
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.64 E-value=0.035 Score=52.06 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
=-++|+|++|+|||||++.+.+.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999865
No 436
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.60 E-value=0.019 Score=58.37 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=19.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++-+++|.|++||||||+.+.|+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999864
No 437
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.56 E-value=0.034 Score=51.84 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4799999999999999988864
No 438
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.53 E-value=0.034 Score=53.06 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 439
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.49 E-value=0.032 Score=53.18 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
No 440
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.48 E-value=0.023 Score=52.30 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=9.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999998864
No 441
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.41 E-value=0.033 Score=52.46 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998753
No 442
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.39 E-value=0.037 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
-++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 489999999999999999988643
No 443
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.39 E-value=0.031 Score=52.37 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999754
No 444
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.38 E-value=0.036 Score=52.53 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998653
No 445
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.33 E-value=0.043 Score=54.14 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+|.+++|.|++||||||+.+.|+..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999998654
No 446
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.16 E-value=0.042 Score=52.59 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+-+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998754
No 447
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.15 E-value=0.049 Score=52.98 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=25.3
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
++|.++.+.|++||||||+.+.|+..+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999997665
No 448
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.12 E-value=0.04 Score=51.27 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999865
No 449
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.09 E-value=0.051 Score=51.27 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=35.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecC---------CcchHHhcCCeEEEEc
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEK---------PRSDVLPFLDRTAYLC 236 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~---------~~~~i~~~~D~v~vL~ 236 (606)
+++++++||-=. +|+ ++.+.|+.+++. +..++++-+. +...+.+++|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 443 356677777765 8888887662 2234566778776654
No 450
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.06 E-value=0.16 Score=58.48 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+.+.||+|+|||+|.+.|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 451
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.06 E-value=0.049 Score=54.49 Aligned_cols=25 Identities=12% Similarity=0.413 Sum_probs=22.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
-.++++|.||+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998754
No 452
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.05 E-value=0.034 Score=55.17 Aligned_cols=28 Identities=11% Similarity=0.306 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+++-+++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5788999999999999999999987654
No 453
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.05 E-value=0.048 Score=56.76 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=22.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999997653
No 454
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.04 E-value=0.023 Score=54.18 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999988643
No 455
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.99 E-value=0.045 Score=54.37 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 456
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.99 E-value=0.05 Score=52.43 Aligned_cols=22 Identities=23% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 457
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.98 E-value=0.054 Score=52.92 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 366899999999999999999997664
No 458
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.96 E-value=0.045 Score=54.59 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 459
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.93 E-value=0.045 Score=51.71 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 37999999999999999998653
No 460
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.90 E-value=0.056 Score=52.39 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+|.++.+-|++||||||+.+.|+..+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998654
No 461
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.89 E-value=0.051 Score=53.39 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-.++|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998543
No 462
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.88 E-value=0.16 Score=55.31 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=53.0
Q ss_pred CCCCCHHHHHHHHHHH--HHhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy10223 158 ISELTPSEHRRVVIGT--QLVK---------------DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEK 220 (606)
Q Consensus 158 v~~LSgGerqRvsIa~--aL~~---------------~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~ 220 (606)
.+++||||+|-.-+|. +++. .-.++++||. +-+|...+...+++++++ |.-+|+++
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiat-- 449 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAA-- 449 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEE--
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEEC--
Confidence 5689999999644443 3222 2257999999 999999999999999865 55566654
Q ss_pred CcchHHhcCCeEEEEc
Q psy10223 221 PRSDVLPFLDRTAYLC 236 (606)
Q Consensus 221 ~~~~i~~~~D~v~vL~ 236 (606)
|. .+.+..|.++.+.
T Consensus 450 P~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 450 PE-NISPERGTTYKLV 464 (483)
T ss_dssp SS-SCCCSSSEEEECC
T ss_pred cc-hhhhccCceEEEE
Confidence 43 6778889888875
No 463
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.84 E-value=0.049 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 464
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.80 E-value=0.063 Score=55.26 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+.+++|+||+|||||||.+.|+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45889999999999999999997653
No 465
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.75 E-value=0.057 Score=55.80 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=22.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.+++|+||+|||||||-+.|+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999997653
No 466
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.75 E-value=0.066 Score=52.35 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+|-++.+.|++||||||+.+.|+..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998654
No 467
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.75 E-value=0.032 Score=51.70 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998653
No 468
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.74 E-value=0.051 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-.++|+|++|+|||||++-+++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999988864
No 469
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.67 E-value=0.059 Score=54.31 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++.-+.|.||+|+|||||.+.++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 456679999999999999999988654
No 470
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.66 E-value=0.065 Score=58.06 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=27.5
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
+++.+ ..+-+|+..+|+|+||+|||||++.|++.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 34444 44567999999999999999999998864
No 471
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.64 E-value=0.05 Score=51.46 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
=-++|+|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999998853
No 472
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.63 E-value=0.024 Score=53.12 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=4.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998865
No 473
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.49 E-value=0.054 Score=51.23 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
No 474
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.47 E-value=0.13 Score=48.25 Aligned_cols=35 Identities=20% Similarity=0.110 Sum_probs=27.0
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
..++..-. ...|.=++|.|+||+|||||...|..+
T Consensus 5 ~~lHas~v-~v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 5 QTWHANFL-VIDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEESEEE-EETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEEE-EECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 34555444 457889999999999999999887653
No 475
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.46 E-value=0.063 Score=50.36 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=28.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 177 KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 177 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
.++.++++||. ..++......+.+.+... ..+..+|+++..+
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~--~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY--SKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT--TTTEEEEEEESCG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc--CCCCeEEEEeCCh
Confidence 36889999995 456777777777776653 2345566666554
No 476
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.43 E-value=0.051 Score=58.70 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999998853
No 477
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.42 E-value=0.06 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4889999999999999999865
No 478
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.31 E-value=0.02 Score=66.47 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=28.5
Q ss_pred EEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 47 s~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
++.+.+|+.++|.||||+|||||.++|++...
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 55678999999999999999999999998753
No 479
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.28 E-value=0.06 Score=55.18 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPR 222 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~ 222 (606)
+++++++|| ...|++.....+.+.+.+.. ....+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~--~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS--GVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC--CCceEEEEeCchh
Confidence 667999999 78899988888888887653 2344555665554
No 480
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.06 E-value=0.034 Score=55.04 Aligned_cols=27 Identities=22% Similarity=0.560 Sum_probs=22.2
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
...+| +.|.||+|+|||||.+.|++..
T Consensus 42 ~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 42 KIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 33445 7899999999999999999754
No 481
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.97 E-value=0.073 Score=53.93 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+...++|.||+|+|||+|.+.|+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34467888999999999999999754
No 482
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.96 E-value=0.092 Score=53.90 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
..+++|+||+|||||||...|+....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999999986543
No 483
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.93 E-value=0.082 Score=52.50 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++..-+.|.||+|+|||||.+.|+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455678999999999999999998753
No 484
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=91.90 E-value=0.098 Score=55.19 Aligned_cols=42 Identities=29% Similarity=0.431 Sum_probs=31.1
Q ss_pred eCCe-EEEEEcCCCccHHHHHHHHHcCCCC----------CCeeEEEECCEeC
Q psy10223 51 RPGE-VLAVLGSKGSGKRALLEVISRRSSG----------TTRGEIILDGTPM 92 (606)
Q Consensus 51 ~~Ge-~~~IlG~nGsGKSTLLk~L~g~~~~----------~~~G~I~~~G~~~ 92 (606)
+.|. -++|+|.|-+|||||+|.|+|.... +..|.+.++|..+
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 3443 5899999999999999999985321 2247888877653
No 485
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.86 E-value=0.082 Score=54.69 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.+|..+.|.||+|+|||||.+.++....
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999997653
No 486
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.83 E-value=0.085 Score=54.03 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++..-+.|.||+|+|||+|.+.|+...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 455679999999999999999998754
No 487
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.68 E-value=0.083 Score=52.97 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.-+.|.||+|+|||||.+.|+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999998765
No 488
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.60 E-value=0.1 Score=53.41 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
+.-+.|.||+|+|||+|+++|+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999999864
No 489
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.59 E-value=0.059 Score=56.10 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 490
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.54 E-value=0.12 Score=52.19 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=22.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
-.++|+|.+|+|||||+|.|.|...
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCce
Confidence 3689999999999999999998753
No 491
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.48 E-value=0.1 Score=54.41 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.-.++|+|++|+|||||++.|++..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45589999999999999999998653
No 492
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=91.46 E-value=0.086 Score=56.03 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 140 ~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
.++++++.++.... ...+|..|.+++.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED----PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc----cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45666666665432 347899998888777777779998887
No 493
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.27 E-value=0.11 Score=55.27 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-.+++|.||+|||||||.+.|+...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3478999999999999999998654
No 494
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.60 E-value=0.038 Score=52.05 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q psy10223 55 VLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g 75 (606)
-++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999988864
No 495
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=91.21 E-value=0.19 Score=53.95 Aligned_cols=23 Identities=17% Similarity=0.485 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++++|||||++.|.|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 496
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.19 E-value=0.085 Score=56.58 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 497
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.13 E-value=0.11 Score=53.85 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++..+.|.||+|+|||||++.++...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998753
No 498
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.04 E-value=0.061 Score=58.10 Aligned_cols=35 Identities=31% Similarity=0.607 Sum_probs=27.0
Q ss_pred EeeEEEEeCCeE--EEEEcCCCccHHHHHHHHHcCCC
Q psy10223 44 KDISLEVRPGEV--LAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 44 ~~vs~~v~~Ge~--~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+.+.-.++.|.+ +.|.||+|+|||||.++|+....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344444555665 89999999999999999998653
No 499
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=91.03 E-value=0.076 Score=50.70 Aligned_cols=21 Identities=24% Similarity=0.615 Sum_probs=18.3
Q ss_pred EEEEcCCCccHHHHHHH-HHcC
Q psy10223 56 LAVLGSKGSGKRALLEV-ISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~-L~g~ 76 (606)
++|+|++|+|||||++. +.|.
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999998 5553
No 500
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.01 E-value=0.12 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
--++|+|++|+|||||++.+.+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998875
Done!