RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10223
(606 letters)
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 209 bits (534), Expect = 7e-64
Identities = 91/228 (39%), Positives = 127/228 (55%), Gaps = 7/228 (3%)
Query: 20 HPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR--S 77
+ G + + A IL D+SL V G+V+A+LGS GSGK LL+ IS R
Sbjct: 3 VLPWWDVGLKAK---NWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEG 59
Query: 78 SGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVR 137
GTT G+I+ +G P P FQ YV L+P LTV +TL Y A L + + S +R
Sbjct: 60 GGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIR 119
Query: 138 NARIRQV-LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196
R+ V L DLAL+ + + ++ E RRV I QL+ DP +L+LDEPT LD +
Sbjct: 120 KKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179
Query: 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
+VS LS A+R R V+LT+ +PRSD+ DR L G+++Y+G
Sbjct: 180 LNLVSTLSQLARRN-RIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 169 bits (430), Expect = 3e-45
Identities = 124/506 (24%), Positives = 204/506 (40%), Gaps = 50/506 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS-RRSSGTTR-GEIILDGTPMSPQLFQT 99
+LK++S +PGE+LAV+GS G+GK L+ ++ R G G ++L+G P+ + +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS 159
YV IP+LTV + L + AHL + +V++ + R+ +VL L L A I
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 160 E------LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRA 213
L+ E +R+ ++L+ DP LL DEPT LD Y +V +L A+ K +
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKT 218
Query: 214 VLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYL-C 272
++ T+ +P S++ D+ + G + Y G + +F +G PCPE NP +Y+
Sbjct: 219 IICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQV 278
Query: 273 LSTVDRR---SRERF----------------IESNNQIVALVEKF--KIEGAPYRKCASS 311
L+ + SRER + + N E +S
Sbjct: 279 LAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNAS 338
Query: 312 VIMDHG-------NSTIPSLTSHKMPLVNFSKPG--------GFQDYQWSFMSRNGLIFS 356
S + K+ L+ G Q + NG +F
Sbjct: 339 WWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFL 398
Query: 357 SISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLP-FSILSVGAASW 415
++ F + F F + +E + GLY + L LP F IL S
Sbjct: 399 FLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTS- 457
Query: 416 IIFQATGLSTSTDLFQFSLMLWS-CFLFAEYLSVALLLVVESGFTAAVVSSYINIIFLVL 474
I + GL + F L L + A + S A V I FL+
Sbjct: 458 ITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLF 517
Query: 475 GSGYLRSFRSMAEWLVYMSYGTQARY 500
G ++ + S+ + ++SY + RY
Sbjct: 518 GGFFI-NSDSIPVYFKWLSYLSWFRY 542
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 136 bits (345), Expect = 3e-37
Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 34/204 (16%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS-RRSSGTTRGEIILDGTPMSPQLFQTT 100
+LK++S + +PGE+ A++G G+GK LL ++ RR+ GE++++G P+ + F+
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKI 83
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE 160
GYV L P+LTV +TL +AA L R +S
Sbjct: 84 IGYVPQDDILHPTLTVRETLMFAAKL-----------------------------RGLSG 114
Query: 161 LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEK 220
E +RV I +LV +P LL LDEPT LD S ++S+L A R ++ ++ +
Sbjct: 115 ---GERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQ 170
Query: 221 PRSDVLPFLDRTAYLCLGDLIYAG 244
P S++ D+ L G +IY G
Sbjct: 171 PSSEIFELFDKLLLLSQGRVIYFG 194
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 133 bits (338), Expect = 4e-35
Identities = 73/230 (31%), Positives = 108/230 (46%), Gaps = 15/230 (6%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
+G +TAL +S EV PGE+ +LG G+GK LL++++ T GEI++ G +
Sbjct: 14 YGGDKTAL--DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-PTSGEILVLGYDVV 70
Query: 94 --PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
P + GYV L P LTV + L + A L +S+ RI ++L L
Sbjct: 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY---GLSKEEAEERIEELLELFGLE 127
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
+ A + + L+ +R+ I L+ DP LL+LDEPT LDP S I +L AK
Sbjct: 128 DKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGG 187
Query: 212 RAVLLT---MEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGF 258
+LL+ +E + DR L G +I G + E F G
Sbjct: 188 VTILLSTHILE----EAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGV 233
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 112 bits (282), Expect = 2e-28
Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 36/209 (17%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS-RRSSGTTRGEIILDGTPMSPQL 96
+L +IS V+PG + A++G G+GK LL+V++ R+++G GEI+++G P+ +
Sbjct: 18 GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL-DKN 76
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
FQ + GYV + P+LTV + L ++A
Sbjct: 77 FQRSTGYVEQQDVHSPNLTVREALRFSA-------------------------------- 104
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+ L+ + +R+ IG +L P +L LDEPT LD + Y IV L A +A+L
Sbjct: 105 LLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLA-DSGQAILC 163
Query: 217 TMEKPRSDVLPFLDRTAYLCL-GDLIYAG 244
T+ +P + + DR L G +Y G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 120 bits (302), Expect = 2e-28
Identities = 135/566 (23%), Positives = 231/566 (40%), Gaps = 84/566 (14%)
Query: 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT-RGEIILDGTPMSPQ 95
IQ IL ++ PGE+LAVLG GSGK LL ++ R G G I+ + + Q
Sbjct: 78 IQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQ 137
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN--- 152
+ + T G+V L P LTV +TL + + L + +++ + V+++L L+
Sbjct: 138 ILKRT-GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN 196
Query: 153 --VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
+ I ++ E +RV I +++ +P LL+LDEPT LD + Y +V L S A+ K
Sbjct: 197 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-K 255
Query: 211 SRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYY 270
+ ++ +M +P S V D L G ++ G + YF S+GF NP +
Sbjct: 256 GKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315
Query: 271 LCLST----VDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVIMDHGNSTIPSLTS 326
L L+ D S ER E N +LV + AP K A + S P +
Sbjct: 316 LDLANGVCQTDGVS-ER--EKPNVKQSLVASYNTLLAPKVKAAIEM------SHFPQANA 366
Query: 327 HKMPLVNFSKPGGFQDY--------QWSFMSRNGL------------IFSSISGS----- 361
+ + + D Q+S + + L +F I+ +
Sbjct: 367 RFVGSASTKEHRS-SDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGL 425
Query: 362 -----------------YFISTFI-------AAFTFPVHRTRYYQEAQEGLYSGPLFILT 397
+FIS F + F FP R + +E G+Y+ + +
Sbjct: 426 MWWHSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMA 485
Query: 398 YIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLM-LWSCFLFAEYLSVALLLVVES 456
I LP ++ + + GL F +L+ L L ++ L +AL +
Sbjct: 486 RIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545
Query: 457 GFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDG-RL 515
A+ + + + F++ G Y+ S W+ Y+S Y L +G+G R+
Sbjct: 546 AKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKYIS---TTFYSYRLLINVQYGEGKRI 602
Query: 516 RNMYSDKYSNCTIPHPF---GCRYTD 538
++ C++PH C++ +
Sbjct: 603 SSLLG-----CSLPHGSDRASCKFVE 623
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 105 bits (264), Expect = 8e-26
Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 22/208 (10%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---SP 94
L DISL ++ GE + ++G GSGK LL +++ G T GE+++DG + S
Sbjct: 12 GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL-GPTSGEVLVDGKDLTKLSL 70
Query: 95 QLFQTTCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGP---QVSRYVRNARIRQVLADLA 149
+ + G V N TVE+ ++ G + R+ + L +
Sbjct: 71 KELRRKVGLVFQNPDDQFF-GPTVEE------EVAFGLENLGLPEEEIEERVEEALELVG 123
Query: 150 LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
L + R+ L+ + +RV I L DP +LLLDEPT LDP ++ +L
Sbjct: 124 LEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE 183
Query: 210 KSRAVLLT--MEKPRSDVLPFLDRTAYL 235
+++T ++ +L DR L
Sbjct: 184 GKTIIIVTHDLD----LLLELADRVIVL 207
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 104 bits (261), Expect = 2e-25
Identities = 58/210 (27%), Positives = 96/210 (45%), Gaps = 17/210 (8%)
Query: 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS--RRSSGTTRGEIILDGTPM 92
G + LK +SL + GE +A++G GSGK LL ++ R T GE+ +DGT +
Sbjct: 12 GGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP---TSGEVRVDGTDI 68
Query: 93 S-------PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVL 145
S + G+V +L+P LT + + L+ V + R R ++L
Sbjct: 69 SKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELL 125
Query: 146 ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
+ L + SEL+ + +RV I L DP ++L DEPT NLD + ++ +L
Sbjct: 126 ERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRE 185
Query: 206 YAKRKSRAVLLTMEKPRSDVLPFLDRTAYL 235
K +++ P ++ + DR L
Sbjct: 186 LNKEAGTTIVVVTHDP--ELAEYADRIIEL 213
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 102 bits (257), Expect = 2e-24
Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 11/184 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR--RSSGTTRGEIILDGTP---MSPQL 96
IL D+S + GE+ +LG GSGK LL+ ++ + GE++LDG +SP+
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKS---GEVLLDGKDIASLSPKE 73
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYY--AAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
YV LTV + + HL + + S+ + + L L L ++A
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDE-EIVEEALELLGLEHLA 132
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
R + EL+ E +RV+I L ++ +LLLDEPT +LD ++ +L + K V
Sbjct: 133 DRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTV 192
Query: 215 LLTM 218
++ +
Sbjct: 193 VMVL 196
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 101 bits (253), Expect = 3e-24
Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 20/187 (10%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIILDGTPMSP--- 94
LKD++LE+ GE +A++G GSGK LL ++ G T GE++++G ++
Sbjct: 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLL-----GGLDKPTSGEVLINGKDLTKLSE 74
Query: 95 ----QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
+L + G+V +L+P LTV + + ++ S R ++L L L
Sbjct: 75 KELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA---GKSAGRRKRAAEELLEVLGL 131
Query: 151 S-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
+ ++ SEL+ + +RV I L+ +P ++L DEPT NLD + ++ +L K
Sbjct: 132 EDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE 191
Query: 210 KSRAVLL 216
+ + +++
Sbjct: 192 RGKTIIM 198
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 101 bits (254), Expect = 4e-24
Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 19/214 (8%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPMSPQLF 97
+L+DISL V GE+ A++G G+GK +A+L ++ S GEI + G P+ +
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS-----GEIKIFGKPVRKRRK 73
Query: 98 QTTCGYVNHRTDLIPS--LTVEQTLYYAAHLSIGPQVSRY--VRNARIRQVLADLALSNV 153
+ GYV ++ + S +TV+ + + G R ++ + L + + ++
Sbjct: 74 RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKG-WFRRLNKKDKEKVDEALERVGMEDL 132
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRA 213
R I EL+ + +RV++ L ++P LLLLDEP +D I +L +++ +
Sbjct: 133 RDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL-RQEGKT 191
Query: 214 VLLTMEKPRSDVLPFLDRTAYLCL-GDLIYAGPT 246
VL+ V+ + DR +CL LI +GP
Sbjct: 192 VLMVTHDL-GLVMAYFDRV--ICLNRHLIASGPP 222
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 99 bits (250), Expect = 6e-24
Identities = 64/213 (30%), Positives = 108/213 (50%), Gaps = 23/213 (10%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPMSPQLF 97
+L+D+S EV+PGE LA++G G+GK +A+L ++ T G I + G P +
Sbjct: 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP-----TSGSIRVFGKP--LEKE 66
Query: 98 QTTCGYVNHRTDLIPS--LTVEQT----LYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
+ GYV R + ++V LY H + ++S+ + A++ + L + LS
Sbjct: 67 RKRIGYVPQRRSIDRDFPISVRDVVLMGLY--GHKGLFRRLSKADK-AKVDEALERVGLS 123
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
+A R I EL+ + +RV++ LV+DP LLLLDEP +DP + I +L +R+
Sbjct: 124 ELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL-RREG 182
Query: 212 RAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
+L+ VL + DR L ++ +G
Sbjct: 183 MTILVVTHDLGL-VLEYFDRVLLLN-RTVVASG 213
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein.
[Transport and binding proteins, Other].
Length = 1394
Score = 104 bits (262), Expect = 3e-23
Identities = 73/243 (30%), Positives = 125/243 (51%), Gaps = 15/243 (6%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSPQLFQT 99
IL ++ V+PG + A++G+ G+GK LL V++ R + T G+ +++G P+ FQ
Sbjct: 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSS-FQR 836
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS 159
+ GYV + +P+ TV ++L ++A+L VS+ + + +V+ L + + A +
Sbjct: 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVG 896
Query: 160 E----LTPSEHRRVVIGTQLVKDPVLLL-LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
L + +R+ IG +LV P LLL LDEPT LD + + I ++ A +A+
Sbjct: 897 VPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAI 955
Query: 215 LLTMEKPRSDVLPFLDRTAYLCLG-DLIYAGP----TRLMLEYFRSIGFP-CPELENPLM 268
L T+ +P + + DR L G +Y G + ++ YF G P CPE NP
Sbjct: 956 LCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAE 1015
Query: 269 YYL 271
+ L
Sbjct: 1016 WML 1018
Score = 82.5 bits (204), Expect = 3e-16
Identities = 68/238 (28%), Positives = 97/238 (40%), Gaps = 21/238 (8%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTP---MSPQ 95
ILK + ++PGE+ VLG GSG LL+ I+ + G G I DG +
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKH 135
Query: 96 LFQTTCGYVNHRTDL-IPSLTVEQTLYYAAHLSIGPQ-----VSRYVRNARIRQV-LADL 148
++ Y N TD+ P LTV +TL +AA PQ VSR I V +A
Sbjct: 136 -YRGDVVY-NAETDVHFPHLTVGETLDFAARCK-TPQNRPDGVSREEYAKHIADVYMATY 192
Query: 149 ALS-----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
LS V + ++ E +RV I + + D T LD + + L
Sbjct: 193 GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL 252
Query: 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCP 261
+ A L+ + + D D+ L G IY GP +YF +GF CP
Sbjct: 253 KTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCP 310
Score = 32.8 bits (75), Expect = 0.71
Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 10/130 (7%)
Query: 372 TFPVHRTRY-YQEAQEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGL-----ST 425
F R Y +E +S FI I +P+++++ +I + G T
Sbjct: 1150 PFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKT 1209
Query: 426 STDLFQFSLMLWSCFLFAEYLSVALLLVV---ESGFTAAVVSSYINIIFLVLGSGYLRSF 482
+ L +F Y S +V+ + AAV++S + + L G L
Sbjct: 1210 GQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSF-CGVLAPP 1268
Query: 483 RSMAEWLVYM 492
M + ++M
Sbjct: 1269 SRMPGFWIFM 1278
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 93.7 bits (234), Expect = 7e-22
Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 22/170 (12%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILD 88
+ +G+++ L D+SL V PGE LA+LG G GK LL +I+ G GEI++D
Sbjct: 8 KTYGSVR---ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIA----GLERPDSGEILID 60
Query: 89 GTPMS---PQLFQTTCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ 143
G ++ P+ + G V ++ L P LTV + + + L + V + AR+R+
Sbjct: 61 GRDVTGVPPE--RRNIGMVFQDYA--LFPHLTVAENIAFG--LKLR-GVPKAEIRARVRE 113
Query: 144 VLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
+L + L + R EL+ + +RV + L ++P LLLLDEP LD
Sbjct: 114 LLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDA 163
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 93.5 bits (233), Expect = 2e-21
Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 24/218 (11%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSPQL-- 96
LKD+SLE+ GE + ++G GSGK LL++++ G T GE+++DG S +
Sbjct: 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLN----GLLKPTSGEVLVDGLDTSSEKSL 74
Query: 97 --FQTTCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
+ G V N L TVE + + ++G + R R+ + L + L
Sbjct: 75 LELRQKVGLVFQNPDDQLF-GPTVEDEVAFG-LENLG--LPREEIEERVAEALELVGLEE 130
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
+ R L+ + +RV I L P +LLLDEPT LDP ++ +L + +
Sbjct: 131 LLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGK 190
Query: 213 AVLLT---MEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+++ +E VL + DR L G ++ G
Sbjct: 191 TIIIVTHDLE----LVLEYADRVVVLDDGKILADGDPA 224
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 91.1 bits (227), Expect = 6e-21
Identities = 66/211 (31%), Positives = 102/211 (48%), Gaps = 22/211 (10%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIILDG--TPMSPQL 96
L +SL + PG + +LG G+GK L+ +++ SSGT I +DG PQ
Sbjct: 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGT----IRIDGQDVLKQPQK 69
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
+ GY+ + P+ TV + L Y A L + AR+ +VL + L + A++
Sbjct: 70 LRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKK 126
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
I L+ RRV I LV DP +L++DEPT LDP ++LS + R V+L
Sbjct: 127 KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG--EDRIVIL 184
Query: 217 T---MEKPRSDVLPFLDRTAYLCLGDLIYAG 244
+ +E DV ++ A L G L++ G
Sbjct: 185 STHIVE----DVESLCNQVAVLNKGKLVFEG 211
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 92.0 bits (229), Expect = 8e-21
Identities = 60/212 (28%), Positives = 91/212 (42%), Gaps = 11/212 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR---RSSGTTR--GEIILDGTPMSPQL 96
IL D+S +V PGE A++G G+GK LL +++ SSG G G +L
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGE-TIFEL 104
Query: 97 FQTTCGYVNH--RTDLIPSLTVEQTLYYAAHLSIG--PQVSRYVRNARIRQVLADLALSN 152
+ G V+ TV + SIG + A + +L L +
Sbjct: 105 RKRI-GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH 163
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
+A R L+ E RRV+I LVKDP LL+LDEP LD ++ +++ L A
Sbjct: 164 LADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGA 223
Query: 213 AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
LL + ++ P L G+++ G
Sbjct: 224 PALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 90.8 bits (226), Expect = 1e-20
Identities = 72/211 (34%), Positives = 99/211 (46%), Gaps = 16/211 (7%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS--PQLFQTT 100
L D+S VRPG +A+LG G+GK L +++R G+I + G + P+
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYV-AQEGQISVAGHDLRRAPRAALAR 75
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE 160
G V + L L+V Q L Y A L +SR ARI ++LA L L+ A + E
Sbjct: 76 LGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARARIAELLARLGLAERADDKVRE 132
Query: 161 LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL----L 216
L RRV I L+ P LLLLDEPTV LDP S I + + + A+ + +VL L
Sbjct: 133 LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHL 192
Query: 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
E D L L R G ++ G
Sbjct: 193 VDEIEADDRLVVLHR------GRVLADGAAA 217
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 93.1 bits (232), Expect = 1e-20
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 30/184 (16%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILD 88
+ FG+ + +LKD++L++ GE + +LG G GK LL +I +G T GEI++D
Sbjct: 11 KSFGSFE---VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMI----AGLEEPTSGEILID 63
Query: 89 GTPMS---PQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNA 139
G ++ P+ +FQ Y L P +TV + + + L V + +
Sbjct: 64 GRDVTDLPPEKRGIAMVFQN---YA-----LYPHMTVYENIAFGLKLR---GVPKAEIDK 112
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
R+++V L L ++ R +L+ + +RV + LV+ P + LLDEP NLD L+
Sbjct: 113 RVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLM 172
Query: 200 VSML 203
S +
Sbjct: 173 RSEI 176
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 90.2 bits (225), Expect = 2e-20
Identities = 63/205 (30%), Positives = 91/205 (44%), Gaps = 38/205 (18%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDG- 89
FG + AL D+S VRPGE+ ++G G+GK L +IS G T G ++ DG
Sbjct: 10 FGGL-VAL--DDVSFSVRPGEIHGLIGPNGAGKTTLFNLIS----GFLRPTSGSVLFDGE 62
Query: 90 --TPMSPQL---------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVS--RYV 136
T + P FQ L P LTV + + AA G + R
Sbjct: 63 DITGLPPHEIARLGIGRTFQIP--------RLFPELTVLENVMVAAQARTGSGLLLARAR 114
Query: 137 R-----NARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191
R R ++L + L+++A R EL+ + RR+ I L DP LLLLDEP L
Sbjct: 115 REEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGL 174
Query: 192 DPLSTYLIVSMLSSYAKRKSRAVLL 216
+P T + ++ + + VLL
Sbjct: 175 NPEETEELAELIRE-LRERGITVLL 198
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 89.8 bits (223), Expect = 2e-20
Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 12/185 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS-------PQ 95
L I++ + GE + ++G G+GK LL++I + T G I ++G +S P
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL-PTSGTIRVNGQDVSDLRGRAIPY 75
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
L + G V L+P V + + +A ++ V R+ L + LS+ R
Sbjct: 76 LRRKI-GVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHR 131
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
+EL+ E +RV I +V P +L+ DEPT NLDP +T+ I+++L K + V+
Sbjct: 132 ALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVV 191
Query: 216 LTMEK 220
T K
Sbjct: 192 ATHAK 196
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 90.1 bits (224), Expect = 2e-20
Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 16/208 (7%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDG---TPMSPQL 96
LK++SLEV G+ +LG GSGK LLE I+ G G+I+L+G T + P+
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIA----GFIKPDSGKILLNGKDITNLPPEK 70
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
YV L P +TV + + Y + ++ ++ L + ++ R
Sbjct: 71 RDI--SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEI---ERKVLEIAEMLGIDHLLNR 125
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
L+ E +RV I LV +P +LLLDEP LD + + L +++ +L
Sbjct: 126 KPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKK-IRKEFGVTVL 184
Query: 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
+ + D+ A + G LI G
Sbjct: 185 HVTHDFEEAWALADKVAIMLNGKLIQVG 212
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 88.8 bits (221), Expect = 4e-20
Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-- 94
+IL D++L + G++ A++G GSGK LL +I G++ L+G P
Sbjct: 8 FGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK-FDSGQVYLNGQETPPLN 66
Query: 95 -----QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA 149
+ + GY+ LI + TVE+ L ++S+ + + ++ L +
Sbjct: 67 SKKASKFRREKLGYLFQNFALIENETVEENLDLGL---KYKKLSKKEKREKKKEALEKVG 123
Query: 150 LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
L+ ++ I EL+ E +RV + ++K P L+L DEPT +LDP + ++ +L
Sbjct: 124 LNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDE 183
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 89.1 bits (221), Expect = 4e-20
Identities = 61/189 (32%), Positives = 99/189 (52%), Gaps = 12/189 (6%)
Query: 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS- 93
G++QT +L ++S + GE++A++GS GSGK LL ++ + T+ G++I +G PMS
Sbjct: 18 GSVQTD-VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS-GDVIFNGQPMSK 75
Query: 94 ------PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLAD 147
+L G++ L+P T + + A L IG + N+R ++LA
Sbjct: 76 LSSAAKAELRNQKLGFIYQFHHLLPDFTALENV--AMPLLIG-KKKPAEINSRALEMLAA 132
Query: 148 LALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYA 207
+ L + A SEL+ E +RV I LV +P L+L DEPT NLD + I +L
Sbjct: 133 VGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELN 192
Query: 208 KRKSRAVLL 216
+ + A L+
Sbjct: 193 RLQGTAFLV 201
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 94.5 bits (235), Expect = 5e-20
Identities = 69/251 (27%), Positives = 130/251 (51%), Gaps = 20/251 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS-RRSSGTTRGEIILDGTPMSPQLFQTT 100
+L++++ RPG + A++G G+GK L++V++ R++ G G+I + G P + F
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 954
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-----VAR 155
GY P +TV ++L Y+A L + +VS+ + + +V+ + L N V
Sbjct: 955 SGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGL 1014
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
++ L+ + +R+ I +LV +P ++ +DEPT LD + +++ + + R V+
Sbjct: 1015 PGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVV 1073
Query: 216 LTMEKPRSDVLPFLDRTAYLCL----GDLIYAGP----TRLMLEYFRSI-GFP-CPELEN 265
T+ +P D+ D L L G +IY+GP + ++EYF +I G P E N
Sbjct: 1074 CTIHQPSIDIFEAFDE---LLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYN 1130
Query: 266 PLMYYLCLSTV 276
P + L +S++
Sbjct: 1131 PATWMLEVSSL 1141
Score = 70.6 bits (173), Expect = 1e-12
Identities = 96/409 (23%), Positives = 156/409 (38%), Gaps = 71/409 (17%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR--SSGTTRGEIILDGTPMSPQLFQT 99
ILKD S ++P + +LG SGK LL ++ + S GEI +G ++ + +
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRK 239
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLS-IGPQ---VSRYVRNARIRQVL----ADLALS 151
T Y++ + +TV++TL ++A +G + +S R + + DL +
Sbjct: 240 TSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMK 299
Query: 152 NVARRNISE----------------------------LTPSEHRRVVIGTQLVKDPVLLL 183
A + ++ + +RV G +V L
Sbjct: 300 ATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLF 359
Query: 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYA 243
+DE + LD +TY IV L VL+++ +P + D L G ++Y
Sbjct: 360 MDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQ 419
Query: 244 GPTRLMLEYFRSIGFPCPELENPLMYYLCLST--------VDRRSRERFIESNNQIVALV 295
GP +LE+F S GF CPE + + +++ DR R+I +
Sbjct: 420 GPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYI----SVSEFA 475
Query: 296 EKFKIEGAPYRKCASSVIMDHGNS-TIPS--LTSHKMPLVNFSKPG--------GFQDYQ 344
E+FK + V M N ++P SHK LV FSK D +
Sbjct: 476 ERFK---------SFHVGMQLENELSVPFDKSQSHKAALV-FSKYSVPKMELLKACWDKE 525
Query: 345 WSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPL 393
W M RN ++ + I IA+ F E LY G L
Sbjct: 526 WLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGAL 574
Score = 29.4 bits (66), Expect = 7.4
Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 375 VHRTRYYQEAQEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLS-TSTDLFQFS 433
V RT +Y+E G+YS + + + +P+ ++ + I++ T+ F F
Sbjct: 1272 VERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFY 1331
Query: 434 LMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVY 491
+ + FL+ Y + + + + AA+ ++ +F L SG+ + +W V+
Sbjct: 1332 FISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLF-NLFSGFFIPRPKIPKWWVW 1388
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 86.7 bits (216), Expect = 8e-20
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 45/182 (24%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR--RSSGTTRGEIILDGTP---MSPQL 96
+L D+SL + GE++ +LG G+GK LL+ ++ + S GEI+LDG +SP+
Sbjct: 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS---GEILLDGKDLASLSPKE 70
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
YV Q L L L+++A R
Sbjct: 71 LARKIAYV-------------------------------------PQALELLGLAHLADR 93
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+EL+ E +RV++ L ++P +LLLDEPT +LD ++ +L A+ + + V++
Sbjct: 94 PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVM 153
Query: 217 TM 218
+
Sbjct: 154 VL 155
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 90.4 bits (225), Expect = 1e-19
Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 29/173 (16%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILD 88
+ FG+ + DISL+++ GE + +LG G GK LL +I+ G + GEI+LD
Sbjct: 13 KSFGDFT---AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIA----GFEQPSSGEILLD 65
Query: 89 GTPM---SPQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNA 139
G + P+ +FQ Y L P +TVE+ + + L + ++ + A
Sbjct: 66 GEDITDVPPEKRPIGMVFQ---SYA-----LFPHMTVEENVAFG--LKVRKKLKKAEIKA 115
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R+ + L + L A R +L+ + +RV + LV +P +LLLDEP LD
Sbjct: 116 RVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD 168
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 87.6 bits (218), Expect = 1e-19
Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 15/211 (7%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQ-- 98
+ D+SL V GE+ +LG G+GK L++++ T G ++G +
Sbjct: 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-PTSGTAYINGYSIRTDRKAAR 74
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
+ GY L LTV + L + A L G + + + +L L L++ A +
Sbjct: 75 QSLGYCPQFDALFDELTVREHLRFYARLK-G--LPKSEIKEEVELLLRVLGLTDKANKRA 131
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT- 217
L+ R++ + L+ P +LLLDEPT LDP S I ++ RK R+++LT
Sbjct: 132 RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV--RKGRSIILTT 189
Query: 218 --MEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
M++ ++ L DR A + G L G
Sbjct: 190 HSMDE--AEALC--DRIAIMSDGKLRCIGSP 216
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 88.2 bits (219), Expect = 1e-19
Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 16/216 (7%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
+G+ A+ +D+S E GE+ +LG G+GK LL +I+ G++ +DG
Sbjct: 11 YGSKVQAV--RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-PDSGKVTIDGVDTV 67
Query: 94 --PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
P + G + L LT + L Y A L+ +SR ARI ++ L L
Sbjct: 68 RDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLL 124
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
R + E + ++V I LV DP +L+LDEPT LD + T K +
Sbjct: 125 EYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLD-IRTRRKFHDFIKQLKNEG 183
Query: 212 RAVLLT---MEKPRSDVLPFLDRTAYLCLGDLIYAG 244
RAV+ + M+ +V DR L G+++ G
Sbjct: 184 RAVIFSSHIMQ----EVEALCDRVIVLHKGEVVLEG 215
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 86.6 bits (215), Expect = 2e-19
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 19/187 (10%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPMSPQLF 97
L DIS V GE+ +LG G+GK R +L +I GE++ DG P+
Sbjct: 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL-----PDSGEVLFDGKPLDI-AA 68
Query: 98 QTTCGYVNHRTDLIPSLTV-EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
+ GY+ L P + V +Q +Y A + + +R RI + L L LS A +
Sbjct: 69 RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR----RRIDEWLERLELSEYANK 124
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+ EL+ ++V ++ DP LL+LDEP LDP++ L+ ++ R + V+L
Sbjct: 125 RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIREL-ARAGKTVIL 183
Query: 217 T---MEK 220
+ ME
Sbjct: 184 STHQMEL 190
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 86.9 bits (216), Expect = 2e-19
Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 34/232 (14%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR----RSSGTTRGEIILDG 89
+G+ LKDISL++ GE+ A++G G GK LL +++R GE++LDG
Sbjct: 10 YGDKH---ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDG 66
Query: 90 TP-----MSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN----AR 140
+ + G V + + P ++ +++ G ++ R
Sbjct: 67 KDIYDLDVDVLELRRRVGMVFQKPNPFP-GSI------YDNVAYGLRLHGIKLKEELDER 119
Query: 141 IRQVLADLALS-NVARR-NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198
+ + L AL V R + L+ + +R+ + L +P +LLLDEPT LDP+ST
Sbjct: 120 VEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAK 179
Query: 199 IVSMLSSYAKRKSRAVLLT---MEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
I +++ K +++ M++ DRTA+L G L+ GPT
Sbjct: 180 IEELIAELKKE--YTIVIVTHNMQQ----AARVADRTAFLLNGRLVEFGPTE 225
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 85.8 bits (213), Expect = 5e-19
Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 19/204 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR----GEIILDGTPMS---- 93
+L DI+LE+ PGE++ + G GSGK LL +I G R G + + G +
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLI-----GGLRSVQEGSLKVLGQELYGASE 74
Query: 94 PQLFQT--TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
+L Q GY+ +L+ LT Q + A L P +S R R +L + L
Sbjct: 75 KELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQ--PNLSYQEARERARAMLEAVGLG 132
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
+ L+ + +RV I LV P L+L DEPT LD S +V ++ A+ +
Sbjct: 133 DHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQG 192
Query: 212 RAVLLTMEKPRSDVLPFLDRTAYL 235
+L+ R +L DR ++
Sbjct: 193 CTILIVTHDNR--ILDVADRIVHM 214
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 83.2 bits (207), Expect = 1e-18
Identities = 53/181 (29%), Positives = 76/181 (41%), Gaps = 49/181 (27%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIILDGTPMS--PQL 96
L DISL V GE+ +LG G+GK L+++I + S GEI + G + P+
Sbjct: 15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS----GEIKVLGKDIKKEPEE 70
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
+ GY+ L +LTV + L S G ++Q LA LA +
Sbjct: 71 VKRRIGYLPEEPSLYENLTVRENLKL----SGG-----------MKQRLA-LAQA----- 109
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
L+ DP LL+LDEPT LDP S +L K + +LL
Sbjct: 110 ------------------LLHDPELLILDEPTSGLDPESRREFWELLRELKKEG-KTILL 150
Query: 217 T 217
+
Sbjct: 151 S 151
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 84.1 bits (208), Expect = 2e-18
Identities = 60/183 (32%), Positives = 90/183 (49%), Gaps = 15/183 (8%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQ 95
A IL +ISL VR GE +A+ G G GK LL++++ S T+ G ++ +G +S P+
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS-GTLLFEGEDVSTLKPE 73
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIR--QVLADLAL-SN 152
++ Y L TVE L I P R R R +LA AL +
Sbjct: 74 AYRQQVSYCAQTPALFGD-TVEDNL-------IFPWQIRNRRPDRAAALDLLARFALPDS 125
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
+ +NI+EL+ E +R+ + L P +LLLDE T LD + I M+ Y + ++
Sbjct: 126 ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNV 185
Query: 213 AVL 215
AVL
Sbjct: 186 AVL 188
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 85.4 bits (212), Expect = 4e-18
Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 18/224 (8%)
Query: 34 FGNIQTALI-LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM 92
+ L D+SLE+ GE+ ++G G+GK LL +I+ T+ G + +DG +
Sbjct: 12 GQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS-GSVFVDGQDL 70
Query: 93 SP------QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLA 146
+ + + G + +L+ S TV + + + L+ V + R+ ++L
Sbjct: 71 TALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLE 127
Query: 147 DLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
+ LS+ A R ++L+ + +RV I L +P +LL DE T LDP +T I+ +L
Sbjct: 128 LVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDI 187
Query: 207 AKRKSRAVLL---TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+ ++L ME + DR A L G L+ G
Sbjct: 188 NRELGLTIVLITHEMEVVKR----ICDRVAVLDQGRLVEEGTVS 227
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 81.8 bits (203), Expect = 1e-17
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 25/172 (14%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM- 92
FG+ +LK I L V+ GEV+ ++G GSGK LL I+ G II+DG +
Sbjct: 10 FGDFH---VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE-PDSGTIIIDGLKLT 65
Query: 93 --SPQLFQ--TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN-------ARI 141
+ + G V + +L P LTV + ++++ P V+ R
Sbjct: 66 DDKKNINELRQKVGMVFQQFNLFPHLTVLE------NITLAP---IKVKGMSKAEAEERA 116
Query: 142 RQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
++L + L++ A ++L+ + +RV I L +P ++L DEPT LDP
Sbjct: 117 LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP 168
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 82.5 bits (205), Expect = 1e-17
Identities = 65/231 (28%), Positives = 95/231 (41%), Gaps = 32/231 (13%)
Query: 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDG-- 89
G IQ L+ +SLEV GE++A+LG G+GK LL+ I G G II DG
Sbjct: 14 GKIQ---ALRGVSLEVERGEIVALLGRNGAGKTTLLKTI----MGLVRPRSGRIIFDGED 66
Query: 90 -TPMSP-QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNAR--IRQVL 145
T + P + + YV + P LTVE+ L + Y R + + L
Sbjct: 67 ITGLPPHERARLGIAYVPEGRRIFPRLTVEENL----------LLGAYARRDKEAQERDL 116
Query: 146 ADL-----ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200
++ L + L+ E + + I L+ P LLLLDEP+ L P I
Sbjct: 117 EEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF 176
Query: 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
+ K +LL + R L DR L G ++ +G +L
Sbjct: 177 EAIKELRKEGGMTILLVEQNARF-ALEIADRGYVLENGRIVLSGTAAELLA 226
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 81.5 bits (202), Expect = 1e-17
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 15/157 (9%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMSPQLF 97
IL D+SL++ GE++A+ G G+GK L ++++ G + G I+L+G P+ +
Sbjct: 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILA----GLIKESSGSILLNGKPIKAKER 69
Query: 98 QTTCGYV-NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
+ + GYV + + +V + L ++ N + VL DL L + R
Sbjct: 70 RKSIGYVMQDVDYQLFTDSVREELLLGL-----KELDAG--NEQAETVLKDLDLYALKER 122
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
+ L+ + +R+ I L+ LL+ DEPT LD
Sbjct: 123 HPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY 159
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 84.7 bits (209), Expect = 1e-17
Identities = 49/210 (23%), Positives = 91/210 (43%), Gaps = 9/210 (4%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR--RSSGTTRGEIILDGTPMS--PQLF 97
+L D+SLE+ GE+LA++G G GK LL I+ +++G T G I + ++ P
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT-GRIAIADRDLTHAPP-H 77
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
+ + L P L VE + + ++ + R+ L + L + A
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLR---AQKMPKADIAERVADALKLVGLGDAAAHL 134
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
++L+ +R+ I + +P +LLLDEP LD + +++ + +L
Sbjct: 135 PAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILC 194
Query: 218 MEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+ + D L D+ + G L G +
Sbjct: 195 VTHDQDDALTLADKAGIMKDGRLAAHGEPQ 224
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 80.9 bits (200), Expect = 1e-17
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMSPQ--L 96
+ + +S + GE L V G G GK LL +++ G R GE+ +GT ++ Q
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILA----GLLRPDSGEVRWNGTALAEQRDE 70
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
Y+ H L P L+ + L++ A + G Q + I LA + L+
Sbjct: 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRT-------IEDALAAVGLTGFEDL 123
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
++L+ + RR+ + + L +LDEPT LD L+ +L ++ R VLL
Sbjct: 124 PAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGG-IVLL 182
Query: 217 TMEKPRSDV 225
T + V
Sbjct: 183 TTHQDLGLV 191
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 81.1 bits (201), Expect = 4e-17
Identities = 49/198 (24%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
+ + AL KD++LE+ GE++A++G G+GK LL ++ T GEI+ +G
Sbjct: 11 KTYPGGHQAL--KDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV-DPTSGEILFNGVQ 67
Query: 92 MSP------QLFQTTCGYVNHRTDLIPSLTVEQTL------YYAAHLSIGPQVSRYVRNA 139
++ + + G + + +L+P L+V + + Y + S+ S+ + A
Sbjct: 68 ITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDK-A 126
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
+ L + + + A + S L+ + +RV I LV+ P ++L DEP +LDP S +
Sbjct: 127 QALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKV 186
Query: 200 VSMLSSYAKRKSRAVLLT 217
+ +L + V++
Sbjct: 187 MDILKDINQEDGITVIVN 204
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 80.8 bits (200), Expect = 5e-17
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 25/165 (15%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------- 94
L ++SLE+ GE L ++G GSGK L +++ ++ G I+LDG P++P
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS-GSILLDGKPLAPKKRAKAF 80
Query: 95 ----QL-FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA 149
Q+ FQ +N P TV + L + + RI ++L +
Sbjct: 81 YRPVQMVFQDPYSSLN------PRRTVGRILSEPLRPHGLSKSQQ-----RIAELLDQVG 129
Query: 150 LSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
L R EL+ + +R+ I L+ +P LL+LDEPT LD
Sbjct: 130 LPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 80.4 bits (199), Expect = 6e-17
Identities = 59/238 (24%), Positives = 111/238 (46%), Gaps = 16/238 (6%)
Query: 31 QRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT 90
+V+ N + AL K+I+L + PGE +A++G G+GK LL I+R + G I+L+GT
Sbjct: 8 SKVYPNGKQAL--KNINLNINPGEFVAIIGPSGAGKSTLLRCINRL-VEPSSGSILLEGT 64
Query: 91 PMSP------QLFQTTCGYVNHRTDLIPSLTVEQTL---YYAAHLSIGPQVSRYVRNARI 141
++ + + G + +LI LTV + + + + R+ +
Sbjct: 65 DITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKE 124
Query: 142 R--QVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
R L + L++ A + +L+ + +RV I L + P L+L DEP +LDP ++ +
Sbjct: 125 RALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQV 184
Query: 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEY-FRSI 256
+ L K V++ + + + DR L G++++ G + + R I
Sbjct: 185 MDYLKRINKEDGITVIINLHQ-VDLAKKYADRIVGLKAGEIVFDGAPSELDDEVLRHI 241
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 80.3 bits (198), Expect = 7e-17
Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 28/230 (12%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR----RSSGTTRGEIILDG 89
FG ++ +L ++LE+ + A++G GSGK LL V +R GE+ LDG
Sbjct: 13 FGQVE---VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69
Query: 90 T---PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN-----ARI 141
M + V + IP+L++ + ++++G +++R V++ R+
Sbjct: 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFE------NVALGLKLNRLVKSKKELQERV 123
Query: 142 RQVLADLALSNVARRNI----SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197
R L L + + + +L+ + +R+ I L P +LL DEPT NLDP +T
Sbjct: 124 RWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTA 183
Query: 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
I S+ K+ VL+T ++ + D A+L G ++ GPTR
Sbjct: 184 KIESLFLEL-KKDMTIVLVTHFPQQAARIS--DYVAFLYKGQIVEWGPTR 230
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 79.9 bits (198), Expect = 7e-17
Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 23/182 (12%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIILDGTP---MSP- 94
+LK + L+VR GE+LA++G GSGK LL +I R S GE+++DG +S
Sbjct: 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS----GEVLIDGEDISGLSEA 70
Query: 95 --QLFQTTCGYVNHRTDLIPSLTVEQT----LYYAAHLSIGPQVSRYVRNARIRQVLADL 148
+ G + L SLTV + L H ++S + + L +
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLRE--HT----RLSEEEIREIVLEKLEAV 124
Query: 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
L +EL+ +RV + L DP LLL DEPT LDP+++ +I ++ S K
Sbjct: 125 GLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKK 184
Query: 209 RK 210
Sbjct: 185 EL 186
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 79.9 bits (198), Expect = 7e-17
Identities = 53/224 (23%), Positives = 100/224 (44%), Gaps = 29/224 (12%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ------ 95
LKD+SL + PGE +A++G G+GK LL ++ T G +++DGT ++
Sbjct: 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP-TSGSVLIDGTDINKLKGKALR 74
Query: 96 --------LFQTTCGYVNHRTDLIPSLTVEQTL---YYAAHLSIGPQVSRYVRNARIR-- 142
+FQ LI L+V + + + + + + R
Sbjct: 75 QLRRQIGMIFQ------QFN--LIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRAL 126
Query: 143 QVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202
L + L + A + +L+ + +RV I L++ P L+L DEP +LDP S+ ++ +
Sbjct: 127 AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDL 186
Query: 203 LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
L + + V++++ + + DR L G +++ GP
Sbjct: 187 LKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVFDGPP 229
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 80.2 bits (198), Expect = 7e-17
Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 32/239 (13%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTR-GEIILDGT-PMSPQ- 95
+L I LEV+PGEV+A++G GSGK LL I+ + +GT R G+I +D +S Q
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 96 -----LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV----SRYVRNARIRQVLA 146
L Q G+V +L P TV + + GP + + AR R++LA
Sbjct: 78 GLIRQLRQHV-GFVFQNFNLFPHRTVLENIIE------GPVIVKGEPKEEATARARELLA 130
Query: 147 DLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
+ L+ L+ + +RV I L P ++L DEPT LDP +++ +
Sbjct: 131 KVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL 190
Query: 207 AKRKSRAVLLTME----KPRSDVLPFLDRTAYLCLGDL--IYAGP----TRLMLEYFRS 255
A+ K V++T E + +D F+D+ + G ++A P TR LE F
Sbjct: 191 AQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQFLEKFLL 249
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 80.0 bits (198), Expect = 7e-17
Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 21/161 (13%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------ 94
+ L +SL+++ GE +LG G GK LL +I+ T GEI+LDG ++
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG-FETPTSGEILLDGKDITNLPPHKR 72
Query: 95 ---QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
+FQ Y L P LTV + + + L ++ + R+ + L + L
Sbjct: 73 PVNTVFQN---YA-----LFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLE 121
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
A R S+L+ + +RV I LV +P +LLLDEP LD
Sbjct: 122 GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 79.5 bits (197), Expect = 9e-17
Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 17/182 (9%)
Query: 32 RVFG-NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIIL 87
+VFG LKD+SL V GE+ ++G G+GK L+ I+ R +SG+ +++
Sbjct: 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS----VLV 64
Query: 88 DGTPMSP------QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARI 141
DGT ++ + + G + +L+ S TV + + L I V + R+
Sbjct: 65 DGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP--LEIA-GVPKAEIEERV 121
Query: 142 RQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201
++L + L + A ++L+ + +RV I L +P +LL DE T LDP +T I++
Sbjct: 122 LELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILA 181
Query: 202 ML 203
+L
Sbjct: 182 LL 183
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 83.0 bits (206), Expect = 9e-17
Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 16/190 (8%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR---RSSGTTRGEIILDGTPMS----- 93
++D+S EV PGE+L ++G GSGK L + T GE+ILDG +
Sbjct: 24 AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83
Query: 94 --PQLFQTTCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA 149
+L + + T L P +T+ + L + + SR R ++L +
Sbjct: 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQI--REALRLHGKGSRAEARKRAVELLEQVG 141
Query: 150 LSNVARRNIS--ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYA 207
L + RR+ +L+ +RV+I L P LL+ DEPT LD + I+ +L
Sbjct: 142 LPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQ 201
Query: 208 KRKSRAVLLT 217
+ AVL
Sbjct: 202 RELGMAVLFI 211
Score = 77.2 bits (191), Expect = 7e-15
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP-------MSPQ 95
+ D+S ++R GE L ++G GSGK L +++ ++ G II DG +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSS-GSIIFDGQDLDLTGGELRRL 365
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVA 154
+ + + + L P +TV L L I S R AR+ ++L + L
Sbjct: 366 RRRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPPEFL 423
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
R EL+ + +RV I L +P LL+LDEP LD
Sbjct: 424 DRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDV 462
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 78.1 bits (193), Expect = 1e-16
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 37/174 (21%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLF 97
Q +LK++SLE++ GE +A+LG GSGK LL+++ +GEI LDG P+S
Sbjct: 13 QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLL-TGDLKPQQGEITLDGVPVS---- 67
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
+ LI L L+ + +R N+ RR
Sbjct: 68 ----DLEKALSSLISVLNQRPYLF----------------DTTLRN--------NLGRR- 98
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
+ E +R+ + L++D ++LLDEPTV LDP++ ++S++ K K+
Sbjct: 99 ---FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKT 149
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 77.6 bits (192), Expect = 1e-16
Identities = 55/209 (26%), Positives = 81/209 (38%), Gaps = 47/209 (22%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
+ +G +L D+SL + GE++A+LG GSGK LL I+ G I++DG
Sbjct: 8 KRYGQKT---VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE-PDSGSILIDGED 63
Query: 92 M-----SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLA 146
+ + G V L P LTV + + LS G Q +Q
Sbjct: 64 LTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG--LS-GGQ----------QQ--- 107
Query: 147 DLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
RV + L DP +LLLDEPT LDP++ + ++L S
Sbjct: 108 ---------------------RVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSL 146
Query: 207 AKRKSRAVLLTMEKPRSDVLPFLDRTAYL 235
+ V+L + DR L
Sbjct: 147 QAQLGITVVLVTHDLD-EAARLADRVVVL 174
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 79.1 bits (196), Expect = 1e-16
Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 16/162 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGT-----PMS 93
++ +SL V+ GE++ +LG G+GK +I G + G+I+LDG PM
Sbjct: 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIV----GLVKPDSGKILLDGQDITKLPMH 70
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ + GY+ + LTVE+ + + +S+ R ++ ++L + ++++
Sbjct: 71 -KRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHL 126
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
+ S L+ E RRV I L +P LLLDEP +DP++
Sbjct: 127 RKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIA 168
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 78.5 bits (194), Expect = 2e-16
Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query: 43 LKDISLEVR---PGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP-------- 91
L D +L++ EV + G+ G+GK LL I+ G I+L+GT
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEK-PDGGTIVLNGTVLFDSRKKI 68
Query: 92 -MSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
+ PQ Q G V + L P L V + L + + + ++L L L
Sbjct: 69 NLPPQ--QRKIGLVFQQYALFPHLNVRENLAFGL-----KRKRNREDRISVDELLDLLGL 121
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
++ R ++L+ E +RV + L P LLLLDEP LD
Sbjct: 122 DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALD 163
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 79.2 bits (196), Expect = 2e-16
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 36/198 (18%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDG---TPMSPQL 96
+ D+SLEVRPGE++ ++G G+GK L +I +G + G +I G T + P
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLI----TGFYKPSSGTVIFRGRDITGLPPHR 75
Query: 97 ---------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ----VSRYVR-----N 138
FQ T L P LTV + + AH +G R +
Sbjct: 76 IARLGIARTFQI--------TRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREAR 127
Query: 139 ARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198
R R++L + L +A R L+ + RR+ I L P LLLLDEP L+P T
Sbjct: 128 ERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEE 187
Query: 199 IVSMLSSYAKRKSRAVLL 216
+ ++ R +LL
Sbjct: 188 LAELIRELRDRGGVTILL 205
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 77.5 bits (191), Expect = 2e-16
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMSPQLFQ 98
+LK ++ GEVLA+LG+ G+GK LL +G R G +++DG P+
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLL----LHLNGLLRPQSGAVLIDGEPLD----Y 58
Query: 99 TTCGYVNHRTDLIPSL-TVEQTLYYAAHLSIGPQVSRYVRN---------ARIRQVLADL 148
+ G + R + + L+ A + V+ N R+R+ L +
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAA---DVDQDVAFGPLNLGLSEAEVERRVREALTAV 115
Query: 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
S + R L+ E +RV I + P +LLLDEPT LDP ++++L
Sbjct: 116 GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAIL 170
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 79.0 bits (195), Expect = 2e-16
Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 6/179 (3%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLF 97
+ L+D+SL + GE++ VLG G GK LL +I+ + +RG I L+G +
Sbjct: 16 KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-PSRGSIQLNGRRIEGPGA 74
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
+ + N L+P L V + + L + + R Q+LA + L +
Sbjct: 75 ERGVVFQNEA--LLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKY 129
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
I +L+ +RV I L +P LLLLDEP LD L+ + +L + + VLL
Sbjct: 130 IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL 188
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 80.5 bits (199), Expect = 2e-16
Identities = 55/174 (31%), Positives = 78/174 (44%), Gaps = 30/174 (17%)
Query: 31 QRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIIL 87
++ FG LKDISL V+ GE + +LG G GK LL +I+ G T G I
Sbjct: 11 RKRFGAFT---ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIA----GLERQTAGTIYQ 63
Query: 88 DG---TPMSPQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN 138
G T + PQ +FQ+ Y L P+LTV + Y + R
Sbjct: 64 GGRDITRLPPQKRDYGIVFQS---YA-----LFPNLTVADNIAYGLK---NRGMGRAEVA 112
Query: 139 ARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R+ ++L + L R+ +L+ + +RV + L P LLLLDEP LD
Sbjct: 113 ERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALD 166
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 77.6 bits (192), Expect = 3e-16
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 16/162 (9%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS------- 93
L+D+S + GE + + G G+GK LL++I TRG+I+++G +S
Sbjct: 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER-PTRGKILVNGHDLSRLKGREI 74
Query: 94 PQLFQTTCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
P L + G V + R L+P TV + + + IG R+ +VL + L
Sbjct: 75 PFLRRQI-GVVFQDFR--LLPDRTVYENVALPLRV-IG--KPPREIRRRVSEVLDLVGLK 128
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
+ AR S+L+ E +RV I +V P +LL DEPT NLDP
Sbjct: 129 HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 78.1 bits (193), Expect = 4e-16
Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 20/177 (11%)
Query: 30 FQRV---FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII 86
F+ V +G + A+ +++LE+ GE L ++G GSGK +++I+R T GEI
Sbjct: 3 FENVTKRYGGGKKAV--NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE-PTSGEIF 59
Query: 87 LDGTPMS---PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV---SRYVRNAR 140
+DG + P + GYV + L P +TVE+ ++++ P++ + R
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE------NIALVPKLLKWPKEKIRER 113
Query: 141 IRQVLADLAL--SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
++LA + L + A R EL+ + +RV + L DP LLL+DEP LDP++
Sbjct: 114 ADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPIT 170
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 77.9 bits (192), Expect = 4e-16
Identities = 62/213 (29%), Positives = 102/213 (47%), Gaps = 20/213 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---LFQ 98
ILKDIS++ G + ++G G+GK L+++I+R T G I++DG + +
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID-PTEGSILIDGVDIKTIDVIDLR 76
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRN 157
G V + L TV+ + Y GP + + +N + L+ + L+ A R+
Sbjct: 77 RKIGMVFQQPHLFEG-TVKDNIEY------GPML-KGEKNVDVEYYLSIVGLNKEYATRD 128
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL- 216
+ L+ E +RV I L +P +LLLDEPT LDP ST +I ++ + + V+
Sbjct: 129 VKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWI 188
Query: 217 --TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
ME+ + D TA+L G L+ T
Sbjct: 189 THNMEQAKR----IGDYTAFLNKGILVEYAKTY 217
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 77.6 bits (192), Expect = 5e-16
Identities = 52/155 (33%), Positives = 73/155 (47%), Gaps = 10/155 (6%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+L+DI+L V GE +A+LG G GK LL +I+ T GE++LDG P
Sbjct: 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP-TSGEVLLDGRP--VTGPGPDI 74
Query: 102 GYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS 159
GYV L+P LTV + L S+ R +++L + L+ +
Sbjct: 75 GYVFQEDA--LLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDKYPH 129
Query: 160 ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194
+L+ +RV I L P LLLLDEP LD L
Sbjct: 130 QLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 76.0 bits (188), Expect = 1e-15
Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 19/169 (11%)
Query: 33 VFGNIQTAL-ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILD 88
+G A+ L+DISL V GE +A++G G GK LL +I +G T GE+++D
Sbjct: 9 TYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRII----AGLERPTSGEVLVD 64
Query: 89 GTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ---VSRYVRNARIRQVL 145
G P++ GYV + L+P LTV ++++G + V + R ++L
Sbjct: 65 GEPVTGPGPD--RGYVFQQDALLPWLTVLD------NVALGLELQGVPKAEARERAEELL 116
Query: 146 ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194
+ LS +L+ +RV + L DP +LLLDEP LD L
Sbjct: 117 ELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDAL 165
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 76.0 bits (187), Expect = 2e-15
Identities = 50/159 (31%), Positives = 84/159 (52%), Gaps = 16/159 (10%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQ---L 96
LK ++L ++ GE ++++G G GK LL +IS + T+ G +IL+G ++ P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS-GGVILEGKQITEPGPDRMVV 59
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
FQ N+ L+P LTV + + A + P +S+ R A + + +A + L+ A +
Sbjct: 60 FQ------NY--SLLPWLTVRENIALAVD-RVLPDLSKSERRAIVEEHIALVGLTEAADK 110
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
+L+ +RV I L P +LLLDEP LD L+
Sbjct: 111 RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 75.5 bits (186), Expect = 2e-15
Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 19/210 (9%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRA---LLEVISRRSSGTTR--GEIILDGTPMSPQLF 97
++ +S VR GE+ +LG G+GK +L + + +SG G ++ P+
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR----EPREV 71
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
+ G V + LT + LY A L V R RI ++L + L A R
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
+ + RR+ I LV P +L LDEPT+ LDP + + + + +LLT
Sbjct: 129 VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLT 188
Query: 218 ---MEKPRSDVLPFLDRTAYLCLGDLIYAG 244
ME+ ++ L DR A + G +I G
Sbjct: 189 THYMEE--AEQL--CDRVAIIDHGRIIAEG 214
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 78.5 bits (194), Expect = 3e-15
Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 17/184 (9%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---P 94
Q LK+ +L + GE +A+LG GSGK LL+++ + +G I L+G ++
Sbjct: 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLL-AGAWDPQQGSITLNGVEIASLDE 407
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV-LADLALSNV 153
Q + T + R L S T+ L A + ++ A ++QV L L S
Sbjct: 408 QALRETISVLTQRVHLF-SGTLRDNLRLANPDASDEELW-----AALQQVGLEKLLESAP 461
Query: 154 ARRN--ISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYA 207
N + E L+ E RR+ + L+ D L LLDEPT LDP++ ++++L +A
Sbjct: 462 DGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA 521
Query: 208 KRKS 211
+ K+
Sbjct: 522 EGKT 525
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 74.1 bits (183), Expect = 3e-15
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 14/180 (7%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSPQLF 97
++ +S + GE L + G GSGK LL +I+ G G I LDG +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIA----GLLPPAAGTIKLDGGDIDDPDV 71
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
C Y+ HR + P+LTV + L + A G I L + L+ +A
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGG-------EELDIAAALEAVGLAPLAHLP 124
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
L+ + RRV + LV + + +LDEPT LD + L ++ ++ + + T
Sbjct: 125 FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAAT 184
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 76.1 bits (188), Expect = 5e-15
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 25/195 (12%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDG---TPMSP 94
+ +S E++ GE+L ++G GSGK +A++ ++ + ++ GEI+ DG +S
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 95 QLFQTTCG----YV--NHRTDLIPSLTVEQTL--YYAAHLSIGPQVSRYVRNARIRQVLA 146
+ + G + + T L P +T+ + H +S+ R ++L
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG---LSKKEAKERAIELLE 136
Query: 147 DLALSNVARRNISELTPSE----HR-RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201
+ + + RR + P E R RV+I L +P LL+ DEPT LD I+
Sbjct: 137 LVGIPDPERR--LKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILD 194
Query: 202 MLSSYAKRKSRAVLL 216
+L + K A++L
Sbjct: 195 LLKELQREKGTALIL 209
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 71.9 bits (177), Expect = 7e-15
Identities = 50/197 (25%), Positives = 78/197 (39%), Gaps = 54/197 (27%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
L ++SL ++ GE++A++G GSGK LL I+ T GEI++DG ++
Sbjct: 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAK------- 65
Query: 102 GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISEL 161
+P + + + Y LS G
Sbjct: 66 ---------LPLEELRRRIGYVPQLSGG-------------------------------- 84
Query: 162 TPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221
+ +RV + L+ +P LLLLDEPT LDP S ++ +L A+ R V++ P
Sbjct: 85 ---QRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEG-RTVIIVTHDP 140
Query: 222 RSDVLPFLDRTAYLCLG 238
DR L G
Sbjct: 141 -ELAELAADRVIVLKDG 156
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 73.7 bits (182), Expect = 7e-15
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 15/186 (8%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------Q 95
L D+S ++ GE L ++G GSGK L I T G II DG + +
Sbjct: 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK-PTSGSIIFDGKDLLKLSRRLRK 78
Query: 96 LFQTTCGYV--NHRTDLIPSLTVEQTLY--YAAHLSIGPQVSRYVRNARIRQVLADLALS 151
+ + V + + L P +T+ + + H G + R + +L + L
Sbjct: 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH---GKLSKKEARKEAVLLLLVGVGLP 135
Query: 152 -NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
V R EL+ + +RV I L +P LL+ DEPT LD I+ +L +
Sbjct: 136 EEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEEL 195
Query: 211 SRAVLL 216
+L
Sbjct: 196 GLTLLF 201
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 75.9 bits (187), Expect = 8e-15
Identities = 51/171 (29%), Positives = 73/171 (42%), Gaps = 19/171 (11%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPM--SPQLFQT 99
D + V A+ G GSGK L+ +I+ G TR GEI+L+G + S +
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIA----GLTRPDEGEIVLNGRTLFDSRKGIFL 70
Query: 100 T-----CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
GYV L P L+V L Y + + R +V+ L + ++
Sbjct: 71 PPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSE-----RRISFERVIELLGIGHLL 125
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
R L+ E +RV IG L+ P LLL+DEP LD Y I+ L
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER 176
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 72.5 bits (179), Expect = 8e-15
Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 48/190 (25%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS--RRSSGTTRGEIILDGTPMS 93
+ ++D+S EVR GE++ + G G+G+ L E + R GEI LDG P++
Sbjct: 9 GLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVT 65
Query: 94 P----QLFQTTCGYV---NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLA 146
+ YV R L+ L+V + + ++ LS G Q Q
Sbjct: 66 RRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLLSGGNQ-----------Q--- 111
Query: 147 DLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
+VV+ L +DP +L+LDEPT +D + I ++
Sbjct: 112 ---------------------KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIREL 150
Query: 207 AKRKSRAVLL 216
A +AVLL
Sbjct: 151 A-DAGKAVLL 159
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 73.6 bits (181), Expect = 9e-15
Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 16/228 (7%)
Query: 23 LVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR 82
++ + +R +T + +S V+PGEV +LG G+GK L +++
Sbjct: 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA- 59
Query: 83 GEIILDG--TPMSPQLFQTTCGYVNHRTDLIPSLTV-EQTLYYAAHLSIGPQVSRYVRNA 139
G +DG P + G+V+ T L LT E Y+A + A
Sbjct: 60 GFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDEL----TA 115
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
R+ ++ L + + R + + ++V I LV DP +LLLDEPT LD ++T +
Sbjct: 116 RLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRAL 175
Query: 200 VSMLSSYAKRKSRAVLLT---MEKPRSDVLPFLDRTAYLCLGDLIYAG 244
+ + + +L + M+ +V DR L G ++Y G
Sbjct: 176 REFIRQL-RALGKCILFSTHIMQ----EVERLCDRVVVLHRGRVVYEG 218
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 74.0 bits (182), Expect = 9e-15
Identities = 53/197 (26%), Positives = 93/197 (47%), Gaps = 29/197 (14%)
Query: 37 IQTALIL-KDISLEVRPGEVLAVLGSKGSGKR----ALLEVIS---RRSSGTTRGEIILD 88
+Q A L +SL ++ G VLA++G GSGK A L ++ R+ T G ++LD
Sbjct: 12 LQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQ----TAGRVLLD 67
Query: 89 GTPMSP-QLFQTTCGYV--NHRTDLIPSLTVEQTLYYAAH-LSIGPQVSRYVRNARIRQV 144
G P++P L + N R+ P T+ H + + +A +
Sbjct: 68 GKPVAPCALRGRKIATIMQNPRSAFNPLHTM------HTHARETCLALGKPADDATLTAA 121
Query: 145 LADLALSNVARRNISELTPSEH-----RRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
L + L N AR + +L P E +R++I L+ + ++ DEPT +LD ++ I
Sbjct: 122 LEAVGLENAAR--VLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARI 179
Query: 200 VSMLSSYAKRKSRAVLL 216
+ +L S ++++ +LL
Sbjct: 180 LDLLESIVQKRALGMLL 196
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 75.0 bits (185), Expect = 1e-14
Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 9/159 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQLFQ 98
+ D++L + GE L ++G GSGK L++I+R T+ GEI++DG +S P +
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS-GEILIDGEDISDLDPVELR 74
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL--SNVARR 156
GYV + L P LTV + + L + R ++L + L S A R
Sbjct: 75 RKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADR 131
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
EL+ + +RV + L DP +LL+DEP LDP++
Sbjct: 132 YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPIT 170
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 75.5 bits (186), Expect = 1e-14
Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSPQLFQT 99
L DISL+++ GE++A+LG G+GK LL +I +G G I L+G + F
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRII----AGLETPDAGRIRLNGRVL----FDV 69
Query: 100 T--------CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
+ G+V L P +TV + + + S AR+ ++L + L
Sbjct: 70 SNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERP-SEAEIRARVEELLRLVQLE 128
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
+A R ++L+ + +RV + L +P +LLLDEP LD
Sbjct: 129 GLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 170
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 73.2 bits (180), Expect = 1e-14
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 11/169 (6%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------- 94
+LK +SL + GE++A++GS GSGK LL ++ + T+ GE++ +G +S
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTS-GEVLFNGQSLSKLSSNERA 78
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
+L G++ L+P T + + A L IG + S R ++L + L +
Sbjct: 79 KLRNKKLGFIYQFHHLLPDFTALENV--AMPLLIGKK-SVKEAKERAYEMLEKVGLEHRI 135
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
SEL+ E +RV I LV P L+L DEPT NLD + +I ++
Sbjct: 136 NHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLM 184
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 72.9 bits (180), Expect = 1e-14
Identities = 58/187 (31%), Positives = 84/187 (44%), Gaps = 26/187 (13%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDG---TPMSP- 94
IL +SL V GE++A+LG G+GK LL+ I G G I DG T + P
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTI----MGLLPPRSGSIRFDGRDITGLPPH 70
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL--ALSN 152
+ + GYV + P LTVE+ L A+ R R AR+ +V +L L
Sbjct: 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYAR-----RRAKRKARLERVY-ELFPRLKE 124
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYA---KR 209
++ L+ E + + I L+ P LLLLDEP+ L P IV + +
Sbjct: 125 RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAP----KIVEEIFEAIRELRD 180
Query: 210 KSRAVLL 216
+ +LL
Sbjct: 181 EGVTILL 187
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 73.2 bits (180), Expect = 2e-14
Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 22/176 (12%)
Query: 30 FQRV---FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII 86
F+ V FG Q +L +I L + GEV+ ++G GSGK LL I++ T G++I
Sbjct: 4 FKNVSKHFGPTQ---VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE-ITSGDLI 59
Query: 87 LDG-----TPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGP-QV---SRYVR 137
+DG + +L + G V + L P LT + + + GP +V S+
Sbjct: 60 VDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMF------GPLRVRGASKEEA 113
Query: 138 NARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
+ R++LA + L+ A SEL+ + +RV I L P L+L DEPT LDP
Sbjct: 114 EKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP 169
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 73.4 bits (181), Expect = 2e-14
Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 11/159 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------Q 95
+ D+SL+VR GE+ ++G GSGK LL I+R T G++++DG ++ +
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-PTSGKVLIDGQDIAAMSRKELRE 98
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
L + V L+P TV + + + + V R R R + L + L
Sbjct: 99 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEH 155
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194
+ EL+ +RV + L DP +LL+DE LDPL
Sbjct: 156 KYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPL 194
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 73.4 bits (181), Expect = 2e-14
Identities = 54/182 (29%), Positives = 82/182 (45%), Gaps = 34/182 (18%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM----SPQLF 97
IL + L+V GE+LA+LG GSGK LL +I +GEI++DG + +L+
Sbjct: 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR-PDKGEILIDGEDIPQLSEEELY 81
Query: 98 Q--TTCGYVNHRTDLIPSLTVEQ----TLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
+ G + + L SLTV + L L ++ +L L
Sbjct: 82 EIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLP--------------ESLIRELVLM 127
Query: 152 NVA----RRNISELTPSE-----HRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202
+ R ++L PSE +RV + + DP LL LDEPT LDP+S +I +
Sbjct: 128 KLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDEL 187
Query: 203 LS 204
+
Sbjct: 188 IR 189
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 72.4 bits (178), Expect = 2e-14
Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 23/189 (12%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR---SSGTTR---GEIILDGTPMSP- 94
+LK++SL V GE +A+ G G+GK LL+ + SG +D SP
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 95 ---QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
++ + T GYV+ +IP ++ L A + V R AR R++LA L
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVS---ALEVVAEPLLERGVPREAARARARELLARL--- 136
Query: 152 NVARRNISELTPS-----EHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
N+ R + L P+ E +RV I + D +LLLDEPT +LD + ++V +++
Sbjct: 137 NIPER-LWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAE- 194
Query: 207 AKRKSRAVL 215
AK + A++
Sbjct: 195 AKARGAALI 203
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 72.3 bits (178), Expect = 2e-14
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 14/176 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS-------P 94
L D+SL +R GE L + G G+GK LL+++ + +RG++ + G ++ P
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-PSRGQVRIAGEDVNRLRGRQLP 75
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLS-IGPQVSRYVRNARIRQVLADLALSNV 153
L + G V L+P TV + + + + + R+ L + L +
Sbjct: 76 LLRRRI-GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQ----RRVGAALRQVGLEHK 130
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
A +L+ E +RV I +V P LLL DEPT NLDP + I+ +L KR
Sbjct: 131 ADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKR 186
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 72.0 bits (177), Expect = 2e-14
Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 26/170 (15%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
+ FG QTA+ +ISL V V +LG G+GK LL++I+ T+ GEII DG P
Sbjct: 8 KRFGK-QTAV--NNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS-GEIIFDGHP 63
Query: 92 MSPQLFQTTCGYVNHRTDL--IPSLTVEQTLYYAAHLSIGPQVS-----RYVRNARIRQV 144
+ R DL I SL LY +L+ + + ++RI +V
Sbjct: 64 WT-------------RKDLHKIGSLIESPPLY--ENLTARENLKVHTTLLGLPDSRIDEV 108
Query: 145 LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194
L + L+N ++ + + +R+ I L+ P LL+LDEPT LDP+
Sbjct: 109 LNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPI 158
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 71.9 bits (177), Expect = 3e-14
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 22/188 (11%)
Query: 28 SCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL 87
+ + +G + +L DISL V+ GE+ LG G+GK +++I + GEI
Sbjct: 4 NDLTKTYGKKR---VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS-GEITF 59
Query: 88 DGTPMSPQLFQTTCGYVNHRTDLI------PSLTVEQTLYYAAHLSIGPQVSRYVRNARI 141
DG + +Q + LI P+LT + L A L +R RI
Sbjct: 60 DG-----KSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG-------IRKKRI 107
Query: 142 RQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201
+VL + L + A++ + + +R+ I L+ +P LL+LDEPT LDP +
Sbjct: 108 DEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRE 167
Query: 202 MLSSYAKR 209
++ S +
Sbjct: 168 LILSLRDQ 175
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 72.0 bits (177), Expect = 3e-14
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 11/158 (6%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS-------P 94
ILK + L V+ GE +A++G GSGK LL V++ ++ GE+ L G P+
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSS-GEVRLLGQPLHKLDEDARA 83
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
L G+V LIP+LT + + L G + A + +L + L
Sbjct: 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELR-GESSADSRAGA--KALLEAVGLGKRL 140
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
++L+ E +RV + P +L DEPT NLD
Sbjct: 141 THYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLD 178
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 75.0 bits (185), Expect = 4e-14
Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 24/181 (13%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLFQT 99
L D++L ++ G++ A++G+ G+GK LL ++ + T GEI ++G +SP+ ++
Sbjct: 337 LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ-GEIRVNGIDLRDLSPEAWRK 395
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI- 158
+V+ + + T+ + + A P S I L L +
Sbjct: 396 QISWVSQNP-YLFAGTIRENILLAR-----PDASD----EEIIAALDQAGLLEFVPKPDG 445
Query: 159 ---------SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
+ L+ + +R+ + L+ LLLLDEPT +LD + +I+ L AK+
Sbjct: 446 LDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ 505
Query: 210 K 210
K
Sbjct: 506 K 506
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 72.0 bits (176), Expect = 4e-14
Identities = 57/227 (25%), Positives = 103/227 (45%), Gaps = 36/227 (15%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDGTPM-----S 93
+KD+S++ V A++G G GK +L I+R S G+I+LD T +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLAD----LA 149
P + G V + + P++++ + ++ Y N R+ + AD +
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNV-----------IAGYKLNGRVNRSEADEIVESS 128
Query: 150 LSNVA---------RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200
L VA + N EL+ + +R+ I + P ++L+DEP LDP+ST I
Sbjct: 129 LKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIE 188
Query: 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
++ K K +++T ++ + D TA+ +GDL+ G T+
Sbjct: 189 ELIEEL-KEKYTIIIVTHNMQQAARVS--DYTAFFYMGDLVECGETK 232
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 71.1 bits (175), Expect = 5e-14
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 30/173 (17%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILD 88
+ FGN TAL D++L++ GE + +LG G GK L +I+ G T G I +
Sbjct: 8 KRFGN-VTAL--DDLNLDIADGEFVVLLGPSGCGKTTTLRMIA----GLEEPTSGRIYIG 60
Query: 89 G---TPMSPQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNA 139
G T + P+ +FQ Y L P +TV + + L P+ +
Sbjct: 61 GRDVTDLPPKDRDIAMVFQN---YA-----LYPHMTVYDNIAFGLKLRKVPKDEI---DE 109
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R+R+V L + ++ R +L+ + +RV +G +V++P + L+DEP NLD
Sbjct: 110 RVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 71.8 bits (176), Expect = 5e-14
Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 12/162 (7%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---T 90
FG+ Q L D++LEV G ++A+LG GSGK LL +I+ + G I L+G T
Sbjct: 10 FGSFQ---ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDS-GRIRLNGQDAT 65
Query: 91 PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
+ + G+V L LTV + + L I ++ AR+ ++L + L
Sbjct: 66 RVHAR--DRKIGFVFQHYALFKHLTVRDNIAFG--LEIRKHPKAKIK-ARVEELLELVQL 120
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ R ++L+ + +RV + L +P +LLLDEP LD
Sbjct: 121 EGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALD 162
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 72.8 bits (179), Expect = 5e-14
Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 17/231 (7%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
+ +IS EV PGE+ +LG G+GK +I T GEI +G P+S ++ G
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE-GEITWNGGPLSQEIKNRI-G 75
Query: 103 YVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELT 162
Y+ L P +TVE L Y A L + + +++ L L + + I EL+
Sbjct: 76 YLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIKELS 132
Query: 163 PSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT--MEK 220
+++ + ++ +P LL+LDEP LDP++ L+ + + + + + ME
Sbjct: 133 KGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEH 192
Query: 221 PR--SDVLPFLDRTAYLCLGDLI----YAGPTRLMLEYFRSIGFPCPELEN 265
D L L + + G + G RL++E S+ EL N
Sbjct: 193 VEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIESDLSL----EELAN 239
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 71.4 bits (175), Expect = 7e-14
Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 27/228 (11%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR----RSSGTTRGEIILDG-----TPM 92
++K + L++ V A++G G GK LL +R GE+ L G +
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 93 SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVR-----NARIRQVLAD 147
P + G V + P LT+ +++IG +++ V+ + R+ L
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYD------NVAIGVKLNGLVKSKKELDERVEWALKK 132
Query: 148 LALSNVARRNI----SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
AL + + + S L+ + +R+VI L P +LL+DEPT N+DP+ T I +L
Sbjct: 133 AALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELL 192
Query: 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
+ +K ++L P + D A+L LG LI GPTR + E
Sbjct: 193 --FELKKEYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRKVFE 237
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 71.7 bits (176), Expect = 7e-14
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIILDGTPMS-PQLF 97
L+DI+L + GE+L VLG G GK LL +I+ G+ I LDG P+ P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGS----ITLDGKPVEGPGAE 71
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
+ G V L+P V+ + + L+ V + R Q+L + L +R
Sbjct: 72 R---GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY 125
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
I +L+ + +RV I L +P LLLLDEP LD + + ++L + + VLL
Sbjct: 126 IWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLL 184
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 70.4 bits (173), Expect = 7e-14
Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 30/177 (16%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR--GEIILDGTPMS 93
ILKD S V+PGE++ VLG GSG LL+ ++ R+ G G+I +G P
Sbjct: 16 GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYK 75
Query: 94 P--QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
+ + YV+ P+LTV +TL +A + + +VR
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRC----KGNEFVRG------------- 118
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
++ E +RV I LV +L D T LD + I+ + + A
Sbjct: 119 ---------ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMAD 166
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 70.8 bits (174), Expect = 9e-14
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 14/165 (8%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---T 90
FG+ L D+SL++ GE++A+LG GSGK LL +I+ G I+ G T
Sbjct: 12 FGDFVA---LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER-PDSGTILFGGEDAT 67
Query: 91 PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN---ARIRQVLAD 147
+ Q + G+V L +TV + A L + P+ R A++ ++L
Sbjct: 68 DVPVQ--ERNVGFVFQHYALFRHMTVFDNV--AFGLRVKPRSERPPEAEIRAKVHELLKL 123
Query: 148 LALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ L +A R ++L+ + +RV + L +P +LLLDEP LD
Sbjct: 124 VQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 70.6 bits (174), Expect = 1e-13
Identities = 54/187 (28%), Positives = 79/187 (42%), Gaps = 26/187 (13%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTP---MSP- 94
IL+ +SLEV GEV VLG G GK LL+ + G G I LDG + P
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTL----MGLLPVKSGSIRLDGEDITKLPPH 70
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL-----A 149
+ + YV ++ P LTVE+ L R R++ ++
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENL----------LTGLAALPRRSRKIPDEIYELFPV 120
Query: 150 LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
L + R +L+ + +++ I LV P LLLLDEPT + P I ++
Sbjct: 121 LKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE 180
Query: 210 KSRAVLL 216
A+LL
Sbjct: 181 GGMAILL 187
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 70.6 bits (173), Expect = 1e-13
Identities = 63/194 (32%), Positives = 92/194 (47%), Gaps = 13/194 (6%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGT---TRGEIIL 87
+G Q L DI+L+ GE L +LG G+GK +LL V++ SGT
Sbjct: 12 YGAHQA---LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDF 68
Query: 88 DGTPMSPQLFQ--TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVL 145
TP + G V + +L P LTV++ L A +G +S+ AR ++L
Sbjct: 69 SKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLG--LSKDQALARAEKLL 126
Query: 146 ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
L L A R L+ + +RV I L+ +P +LL DEPT LDP T IVS++
Sbjct: 127 KRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKE 186
Query: 206 YAKRKSRAVLLTME 219
A+ V++T E
Sbjct: 187 LAETGITQVIVTHE 200
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 72.6 bits (178), Expect = 1e-13
Identities = 47/151 (31%), Positives = 78/151 (51%), Gaps = 9/151 (5%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQLFQTTC 101
D+SL + GE+ A+LG+ G GK LL +++ T G+I+LDG +S P +Q
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ-PTAGQIMLDGVDLSHVPP--YQRPI 93
Query: 102 GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISEL 161
+ L P +TVEQ + + ++ + +R+ ++L + + A+R +L
Sbjct: 94 NMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPHQL 150
Query: 162 TPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ + +RV + L K P LLLLDEP LD
Sbjct: 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 69.8 bits (171), Expect = 1e-13
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 14/179 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ--LFQT 99
+ +S + GE L V G GSGK LL +++ S G ++L+G P+ Q
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLA-GRVLLNGGPLDFQRDSIAR 73
Query: 100 TCGYVNHRTDLIPSLTVEQTL-YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
Y+ H + +L+V + L ++ A S + ++ + LA + L+ R +
Sbjct: 74 GLLYLGHAPGIKTTLSVLENLRFWHADHS----------DEQVEEALARVGLNGFEDRPV 123
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
++L+ + RRV + L+ L +LDEPT LD ++ + R VL T
Sbjct: 124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTT 182
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 73.2 bits (180), Expect = 1e-13
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 22/189 (11%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKR----ALLEVISRRSSGTTRGEIILDGTP------ 91
++K+IS +RPGE L ++G GSGK ALL +I+ ++GEI DG P
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN------SQGEIWFDGQPLHNLNR 354
Query: 92 --MSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSI-GPQVSRYVRNARIRQVLADL 148
+ P + + + + L P L V Q + L + P +S R ++ V+ ++
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQII--EEGLRVHQPTLSAAQREQQVIAVMEEV 412
Query: 149 ALSNVAR-RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYA 207
L R R +E + + +R+ I L+ P L++LDEPT +LD I+++L S
Sbjct: 413 GLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQ 472
Query: 208 KRKSRAVLL 216
++ A L
Sbjct: 473 QKHQLAYLF 481
Score = 49.7 bits (119), Expect = 3e-06
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKR----ALLEVISRRSSGTTRGEIILDGTPMS 93
++ D+SL++ GE LA++G GSGK ++L ++ G+I G +
Sbjct: 20 TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL 79
Query: 94 PQLFQTTCGYVNHRTDLI---------PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV 144
QT G ++ +I P T+E+ LY LS+ + R I
Sbjct: 80 HASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEV--LSLHRGMRREAARGEILNC 137
Query: 145 LADLALSNVARRNIS---ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L + + A+R +L+ E +RV+I L+ P LL+ DEPT LD
Sbjct: 138 LDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALD 188
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 70.6 bits (174), Expect = 1e-13
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 21/187 (11%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTP---MSPQ 95
+L D+SL +RPGEV+A+LG G+GK LL + SG GE+ L+G P SP
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL----SGELSPDSGEVRLNGRPLADWSPA 72
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
+ + L TVE+ + A + + LA + L+++A
Sbjct: 73 ELARRRAVLPQHSSLSFPFTVEEVV--AMGRAPHGLSRAEDDAL-VAAALAQVDLAHLAG 129
Query: 156 RNISELTPSEHRRV----VIGTQL---VKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
R+ +L+ E +RV V+ QL P LLLDEPT LD + ++ + A
Sbjct: 130 RDYPQLSGGEQQRVQLARVL-AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAH 188
Query: 209 RKSRAVL 215
+ AV+
Sbjct: 189 ERGLAVI 195
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 69.9 bits (171), Expect = 2e-13
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 48 LEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGY 103
L GE+L +LG G+GK RA+L +I +G + + G GY
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA-----KGTVKVAGASPGKGWRHI--GY 53
Query: 104 VNHRTDL---IPSLTVEQTLYYAAHLSIGP-QVSRYVRNARIRQVLADLALSNVARRNIS 159
V R + P ++V T+ IG + A +R L + L+ +A R +
Sbjct: 54 VPQRHEFAWDFP-ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG 112
Query: 160 ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
EL+ + +RV++ L P +LLLDEP LD + L+ + A + ++ T
Sbjct: 113 ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTT 170
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 72.0 bits (177), Expect = 2e-13
Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 11/159 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSP----Q 95
+ D SL+V GE+ ++G GSGK L+ +++R TRGEI++DG +S +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE-PTRGEILVDGKDIAKLSAAELRE 102
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
L + V L+P TV + + + + V + R R + L + L A
Sbjct: 103 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYAD 159
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194
+ +EL+ +RV + L DP +LL+DE LDPL
Sbjct: 160 KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPL 198
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 71.0 bits (174), Expect = 2e-13
Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 18/189 (9%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEV---ISRRSSGTTR--GEIILDGTPMSPQ 95
L++ +S V+ GE +LG G+GK L + ++ +G+ GE + P +
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPV----PSRAR 76
Query: 96 LFQTTCGYVNHRTDLIPSLTV-EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
+ G V +L P TV E L + + + +R A + +L L N A
Sbjct: 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAAR----ALVPPLLEFAKLENKA 132
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
+ EL+ RR+ + LV DP +L+LDEPT LDP + +L+ L S R + +
Sbjct: 133 DAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR-GKTI 191
Query: 215 LLT---MEK 220
LLT ME+
Sbjct: 192 LLTTHFMEE 200
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 71.4 bits (175), Expect = 2e-13
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 11/159 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSP----Q 95
+ D L + GE+ ++G GSGK + +++R T G+I +DG SP +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-PTAGQIFIDGENIMKQSPVELRE 67
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
+ + G V + L P +T+ Q L R + ++L + L
Sbjct: 68 VRRKKIGMVFQQFALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEH 124
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194
R EL+ +RV + L +P +LL+DE LDPL
Sbjct: 125 RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 69.1 bits (169), Expect = 2e-13
Identities = 57/210 (27%), Positives = 89/210 (42%), Gaps = 24/210 (11%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSP------Q 95
L GE+ A++G GSGK LL +I+ + + G ++++G T P
Sbjct: 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS-GRVLINGVDVTAAPPADRPVSM 74
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVS-RYVRNARIRQVLADLALSNVA 154
LFQ +L LTVEQ + L + P + I LA + L+ +
Sbjct: 75 LFQ--------ENNLFAHLTVEQNV----GLGLSPGLKLTAEDRQAIEVALARVGLAGLE 122
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
+R EL+ E +RV + LV+D +LLLDEP LDP ++ ++ V
Sbjct: 123 KRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTV 182
Query: 215 LLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
L+ +P D R +L G + G
Sbjct: 183 LMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 69.7 bits (171), Expect = 3e-13
Identities = 51/164 (31%), Positives = 73/164 (44%), Gaps = 17/164 (10%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS--RRSSGTTRGEIILDGTP---MSPQL 96
+L +SL++RPGEVLA+LG G+GK LL+ +S GE+ L+G P P+
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS---GEVTLNGVPLNSWPPEE 72
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARI-RQVLADLALSNVAR 155
+ + L TV++ + + RI Q LA LS +A
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSG--REPEEDERIAAQALAATDLSGLAG 130
Query: 156 RNISELTPSEHRRVVIG---TQL---VKDPVLLLLDEPTVNLDP 193
R+ L+ E +RV + QL V L LDEPT LD
Sbjct: 131 RDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI 174
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 71.4 bits (176), Expect = 5e-13
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 30/168 (17%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSPQLFQT 99
L +SL VRPGEV A+LG G+GK L++++ SG GEI++DG P++ F +
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKIL----SGVYPPDSGEILIDGKPVA---FSS 76
Query: 100 TCGYVNHR-------TDLIPSLTVEQTLYYAAHLSIGPQVSRYVR-------NARIRQVL 145
+ L+P+L+V A ++ +G + +R R R++L
Sbjct: 77 PRDALAAGIATVHQELSLVPNLSV------AENIFLGREPTRRFGLIDRKAMRRRARELL 130
Query: 146 ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
A L L + +L+ ++ + V I L D +L+LDEPT L
Sbjct: 131 ARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTV 178
Score = 63.7 bits (156), Expect = 1e-10
Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 32/194 (16%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVI--SRRSSGTTRGEIILDGTPM---SP-QL 96
++D+S VR GE+L + G G+G+ L + +R +S GEI+LDG P+ SP
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASS---GEILLDGKPVRIRSPRDA 331
Query: 97 FQTTCGYV--NHRTD-LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ YV + +++ L+ +++ + + A+ + + + R +
Sbjct: 332 IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRR--GLIDRRKERALAER------ 383
Query: 154 ARRNISELTPSEHRR-----------VVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202
R + TPS + VV+ L DP +L+LDEPT +D + I +
Sbjct: 384 YIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRL 443
Query: 203 LSSYAKRKSRAVLL 216
+ A + +A+L+
Sbjct: 444 IRELAA-EGKAILM 456
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 68.5 bits (168), Expect = 6e-13
Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 30/219 (13%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMS-------- 93
L V GE++A+LG G+GK LL +I+ G GEI+++G +
Sbjct: 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIA----GFETPASGEILINGVDHTASPPAERP 72
Query: 94 -PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVS-RYVRNARIRQVLADLALS 151
LFQ +L LTV Q + L + P + + ++ A + L+
Sbjct: 73 VSMLFQ--------ENNLFAHLTVAQNI----GLGLSPGLKLNAEQREKVEAAAAQVGLA 120
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
+R EL+ + +RV + LV++ +LLLDEP LDP +++++S +
Sbjct: 121 GFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERK 180
Query: 212 RAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
+L+ P D DR +L G + G T+ +L
Sbjct: 181 MTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQELL 218
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 71.2 bits (175), Expect = 6e-13
Identities = 60/232 (25%), Positives = 97/232 (41%), Gaps = 31/232 (13%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPM- 92
T +K IS ++ GE LA++G GSGK ++L ++ ++ G I+ DG +
Sbjct: 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80
Query: 93 ---SPQL-----------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN 138
QL FQ T L P T+ + L L + +SR
Sbjct: 81 AASERQLRGVRGNKIGMIFQ------EPMTSLNPLHTIGKQLAEV--LRLHRGLSRAAAR 132
Query: 139 ARIRQVLADLALSNVARRNIS---ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
AR ++L + + +R + EL+ + +RV+I L +P LL+ DEPT LD
Sbjct: 133 ARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTV 192
Query: 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
I+ +L A+L + V F DR + G+++ G T
Sbjct: 193 QAQILDLLKELQAELGMAILF-ITHDLGIVRKFADRVYVMQHGEIVETGTTE 243
Score = 67.7 bits (166), Expect = 8e-12
Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 32/169 (18%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTP------- 91
+ ISL +R G+ L ++G GSGK ALL +I ++GEI DG
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP------SQGEIRFDGQDIDGLSRK 356
Query: 92 -MSP-----QL-FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV 144
M P Q+ FQ G ++ P +TV Q + + P++S R+ R+ +
Sbjct: 357 EMRPLRRRMQVVFQDPYGSLS------PRMTVGQIIEEGLRVH-EPKLSAAERDQRVIEA 409
Query: 145 LADLALSNVAR-RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L ++ L R R E + + +R+ I L+ P L+LLDEPT LD
Sbjct: 410 LEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 71.1 bits (175), Expect = 6e-13
Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 41/204 (20%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTT 100
+L+++SL + PGE + ++G G+GK LL++++ + GE+
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS-GEVTRPKG--------LR 67
Query: 101 CGYVNHRTDLIPSLTV-----------------EQTLYYAAHLSIGPQVSR--------- 134
GY++ L P TV + Y ++
Sbjct: 68 VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELD 127
Query: 135 -YVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
+ AR + L L + R +S L+ RRV + L+++P LLLLDEPT +LD
Sbjct: 128 GWTLEARAEEALLGLGFPDEDRP-VSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD- 185
Query: 194 LSTYLIVSMLSSYAKRKSRAVLLT 217
L + + L Y KR V++
Sbjct: 186 LES---IEWLEDYLKRYPGTVIVV 206
Score = 63.0 bits (154), Expect = 2e-10
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 20/154 (12%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTT 100
L+LKD+S + G+ +A++G G+GK LL++++ + G + + T
Sbjct: 336 LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLS-GTVKVGET--------VK 386
Query: 101 CGYVN-HRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNI 158
GY + HR +L P TV + LS + +R L + + +
Sbjct: 387 IGYFDQHRDELDPDKTVLE------ELS---EGFPDGDEQEVRAYLGRFGFTGEDQEKPV 437
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L+ E R+++ L++ P LLLLDEPT +LD
Sbjct: 438 GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 68.5 bits (167), Expect = 7e-13
Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 24/220 (10%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIILDGTPM-----S 93
+K+++L+V+ G V A++G G GK L I+R T G I+LDG +
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLS-------IGPQVSRYVRNARIRQVLA 146
P + G V + + P+++V + L+ + R +R A + +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK 139
Query: 147 DLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
D L A + L+ + +R+ I L +P +LL+DEPT LDP ST I +++
Sbjct: 140 D-RLKTPA----TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL 194
Query: 207 AKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
K+ + +++T ++ + D T++ +GDL+ GPT
Sbjct: 195 -KKVTTIIIVTHNMHQAARVS--DTTSFFLVGDLVEHGPT 231
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 68.1 bits (166), Expect = 9e-13
Identities = 55/218 (25%), Positives = 105/218 (48%), Gaps = 19/218 (8%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--GTTR--GEIILDGTPMSPQLFQ 98
LK IS+E+ V+A +G G GK L + +R + TR GEI +DG + + Q
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 99 T-----TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
G V R + P ++ + + Y ++ G + + ++R R+ + L AL +
Sbjct: 79 VDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVN-GVKDNAFIRQ-RVEETLKGAALWDE 135
Query: 154 ARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
+ + E L+ + +R+ I + P +LL+DEP LDP+ST + ++ K+
Sbjct: 136 VKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KK 194
Query: 210 KSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
V++T ++ + D+TA+ +G+++ T+
Sbjct: 195 DYTIVIVTHNMQQAARVS--DKTAFFYMGEMVEYDDTK 230
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 70.4 bits (173), Expect = 9e-13
Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 9/179 (5%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---SPQLFQT 99
L+ +S V PGE +A++G G+GK LL ++ T G I ++G P+ ++
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD-PTEGSIAVNGVPLADADADSWRD 396
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL--ALSNVARRN 157
+V + + + T+ + + A + ++ + A + + +A L L
Sbjct: 397 QIAWV-PQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEG 455
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+ L+ + +R+ + ++D LLLLDEPT +LD + ++ L + A+ R VLL
Sbjct: 456 GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQG--RTVLL 512
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 70.3 bits (173), Expect = 1e-12
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 36/179 (20%)
Query: 33 VFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDG 89
F + A D+SL V+ GE+ A+LG G+GK L++++ G GEI +DG
Sbjct: 13 RFPGV-VAN--DDVSLSVKKGEIHALLGENGAGKSTLMKIL----FGLYQPDSGEIRVDG 65
Query: 90 TPMSP---------------QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSR 134
+ Q F L+P+LTV + + S G + R
Sbjct: 66 KEVRIKSPRDAIRLGIGMVHQHFM-----------LVPTLTVAENIILGLEPSKGGLIDR 114
Query: 135 YVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
ARI+++ L +++L+ E +RV I L + LL+LDEPT L P
Sbjct: 115 RQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTP 173
Score = 66.0 bits (162), Expect = 3e-11
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 29/194 (14%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVIS--RRSSGTTRGEIILDGTPM-----SPQ 95
+KD+S EVR GE++ + G G+G+ L+E IS R+ G I+L+G + +
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVLGRLSPRE 330
Query: 96 LFQTTCGYV---NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRY-VRNARIRQVLADLALS 151
+ YV H L+ L++ + L H P + IR+ +L
Sbjct: 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRH-DKKPFSRGGFLDRRAIRKFAREL--- 386
Query: 152 NVAR---RNISELTPSEH------RRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202
+ R S P+ +++++ +L + P LL+ +PT LD + I
Sbjct: 387 -IEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHER 445
Query: 203 LSSYAKRKSRAVLL 216
L + +AVLL
Sbjct: 446 LLE-LRDAGKAVLL 458
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 67.7 bits (166), Expect = 1e-12
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG----TPMS-PQLF 97
L D+S V PGE+ ++G G+GK L++VI+ ++ GE++ DG T + ++
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE-GEVLFDGDTDLTKLPEHRIA 79
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVR-----NARIRQVLADLALSN 152
+ G + + +LTV + L A + S + R RI ++LA + L +
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD 139
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
R + L+ + + + IG L +DP LLLLDEP + T +L S A + S
Sbjct: 140 ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHS 198
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 66.5 bits (163), Expect = 2e-12
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 15/157 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS--RRSSGTTRGEIILDGTPMS--PQLF 97
+ D+S + GE L + G G+GK LL +++ R GE+ G P+ + +
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDA---GEVYWQGEPIQNVRESY 73
Query: 98 QTTCGYVNHRTDLIPSLTVEQTL-YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
Y+ H+ + LT + L ++ A I + LA + L+ +
Sbjct: 74 HQALLYLGHQPGIKTELTALENLHFWQR-------FHGSGNAATIWEALAQVGLAGLEDL 126
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
+ +L+ + RRV + + L +LDEP LD
Sbjct: 127 PVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDK 163
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 65.5 bits (161), Expect = 2e-12
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 45/172 (26%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLFQ 98
+LKD+SL ++PGE +A++G GSGK LL+++ R T GEI++DG + + +
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVDLRDLDLESLR 75
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
YV + S T+ + + LS G Q RQ +A +AR
Sbjct: 76 KNIAYVPQDP-FLFSGTIRENI-----LSGG-Q----------RQRIA------IAR--- 109
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
L++DP +L+LDE T LDP + LI+ L + AK K
Sbjct: 110 ---------------ALLRDPPILILDEATSALDPETEALILEALRALAKGK 146
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 68.2 bits (167), Expect = 2e-12
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 16/191 (8%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTR--GEII 86
+V+G+ + ++ +VR GEV LG G+GK + +++ R +SGT R G +
Sbjct: 1 KVYGDF---KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV 57
Query: 87 LDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLA 146
+ P+ + + G V + LT + L L + + R ++L
Sbjct: 58 VR----EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY---GLPKDEAEERAEELLE 110
Query: 147 DLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
L A R + + RR+ I L+ P +L LDEPT LDP + I + +
Sbjct: 111 LFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL 170
Query: 207 AKRKSRAVLLT 217
K + +LLT
Sbjct: 171 -KEEGVTILLT 180
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 66.8 bits (164), Expect = 2e-12
Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 38/181 (20%)
Query: 31 QRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGK----RAL--LEVISRRSSGTTRGE 84
+ FG+ + +LK ISL V GEV+ ++G GSGK R L LE G
Sbjct: 9 SKSFGDKE---VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP-------DSGS 58
Query: 85 IILDGTPMS-----PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN- 138
I +DG + +L + G V + +L P LTV + + A P V+
Sbjct: 59 ITVDGEDVGDKKDILKLRRKV-GMVFQQFNLFPHLTVLENVTLA------P---VKVKKL 108
Query: 139 ------ARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ ++L + L++ A ++L+ + +RV I L DP ++L DEPT LD
Sbjct: 109 SKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALD 168
Query: 193 P 193
P
Sbjct: 169 P 169
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 66.6 bits (163), Expect = 2e-12
Identities = 63/200 (31%), Positives = 97/200 (48%), Gaps = 18/200 (9%)
Query: 29 CFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILD 88
CF +G Q L DI+L+ GE L +LG G+GK +LL V++ + G + +
Sbjct: 10 CF---YGAHQ---ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRS-GTLNIA 62
Query: 89 G---------TPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNA 139
G + + + + G V + +L P LTV+Q L A +G +S+ A
Sbjct: 63 GNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLG--LSKDQALA 120
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
R ++L L L A R L+ + +RV I L+ +P +LL DEPT LDP T I
Sbjct: 121 RAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180
Query: 200 VSMLSSYAKRKSRAVLLTME 219
VS++ A+ V++T E
Sbjct: 181 VSIIRELAETGITQVIVTHE 200
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 65.7 bits (160), Expect = 3e-12
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 12/182 (6%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQL- 96
+L+ IS + G +L + GS G+GK LL++I+ + +GEI+ + + L
Sbjct: 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-PEKGEILFERQSIKKDLC 70
Query: 97 -FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
+Q +V HR+ + P LT+ + Y H S G I ++ +L ++
Sbjct: 71 TYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPG--------AVGITELCRLFSLEHLID 122
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
L+ + R+V + + L LLDEP V LD LS I++ + + + K AVL
Sbjct: 123 YPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEH-RAKGGAVL 181
Query: 216 LT 217
LT
Sbjct: 182 LT 183
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 68.7 bits (168), Expect = 3e-12
Identities = 58/225 (25%), Positives = 87/225 (38%), Gaps = 55/225 (24%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVI-SRRSSGTTRGEII-------------- 86
+LK+IS + GEVL +LG G+GK L+ V+ T G II
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74
Query: 87 --LDGTP-------MSPQ---------------------LFQTTCGYVNHRTDLIPSLTV 116
G P + P+ + Q T T L L
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134
Query: 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV 176
+ + Y ++G V I V ++++AR +L+ E +RVV+ QL
Sbjct: 135 LEEIGYEGKEAVGRAVDL------IEMVQLSHRITHIAR----DLSGGEKQRVVLARQLA 184
Query: 177 KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221
K+P L L DEPT LDP + L+ + L K +++LT P
Sbjct: 185 KEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP 229
Score = 51.7 bits (124), Expect = 8e-07
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 46 ISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTR---GEIILDGTPMSPQL--- 96
+SLEV+ GE+ ++G+ G+GK L ++I+ +SG G+ +D T P
Sbjct: 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGR 362
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
+ G ++ DL P TV L A L + +++R A I L +
Sbjct: 363 AKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR--MKAVI--TLKMVGFDEEKAE 418
Query: 157 NI-----SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS---------------- 195
I EL+ E RV + L+K+P +++LDEPT +DP++
Sbjct: 419 EILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEME 478
Query: 196 -TYLIVS 201
T++IVS
Sbjct: 479 QTFIIVS 485
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 66.1 bits (162), Expect = 3e-12
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIILDGT-----PMS 93
++ D+SLEV GE++ +LG G+GK +I R SG I+LD PM
Sbjct: 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK----ILLDDEDITKLPMH 74
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSI-GPQVSRYVRNARIRQVLADLALSN 152
+ + GY+ + LTVE + A L I + + R + +L + +++
Sbjct: 75 -KRARLGIGYLPQEASIFRKLTVEDNI--MAVLEIREKDLKKAERKEELDALLEEFHITH 131
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
+ L+ E RRV I L +P +LLDEP +DP++
Sbjct: 132 LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 67.5 bits (165), Expect = 4e-12
Identities = 61/193 (31%), Positives = 89/193 (46%), Gaps = 28/193 (14%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT---RGEIILDGTPMSPQ--L 96
++ +S V GE +LG G+GK I+R G T G+I + G P+ + L
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGK----STIARMILGMTSPDAGKITVLGVPVPARARL 111
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVR-NAR-IRQVLADL----AL 150
+ G V +L TV + L L G RY + R I V+ L L
Sbjct: 112 ARARIGVVPQFDNLDLEFTVRENL-----LVFG----RYFGMSTREIEAVIPSLLEFARL 162
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
+ A +S+L+ RR+ + L+ DP LL+LDEPT LDP + +LI L S R
Sbjct: 163 ESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR- 221
Query: 211 SRAVLLT---MEK 220
+ +LLT ME+
Sbjct: 222 GKTILLTTHFMEE 234
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 67.8 bits (166), Expect = 4e-12
Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 23/158 (14%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDG---TPMSPQLF- 97
D + + + A+ G GSGK +L+ +I+ G TR G I L+G +F
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIA----GLTRPDEGRIELNGRVLVDAEKGIFL 71
Query: 98 ---QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
+ GYV L P TV L Y A+ Q++A L + ++
Sbjct: 72 PPEKRRIGYVFQDARLFPHYTVRGNLRYGM---------WKSMRAQFDQLVALLGIEHLL 122
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R L+ E +RV IG L+ P LLL+DEP +LD
Sbjct: 123 DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 65.7 bits (160), Expect = 4e-12
Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 24/202 (11%)
Query: 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSP------QLF 97
L V GE++A++G G+GK LL +I+ G I ++ T ++P LF
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-PASGSIKVNDQSHTGLAPYQRPVSMLF 76
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVS-RYVRNARIRQVLADLALSNVARR 156
Q +L LTV Q + L + P + + ++ + +++ R
Sbjct: 77 Q--------ENNLFAHLTVRQNI----GLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDR 124
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+L+ + +RV + LV+ +LLLDEP LDPL +++++ + R +L+
Sbjct: 125 LPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLM 184
Query: 217 TMEKPRSDVLPFLDRTAYLCLG 238
SD + A + G
Sbjct: 185 VTHHL-SDARAIASQIAVVSQG 205
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 67.7 bits (166), Expect = 5e-12
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 27/163 (16%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDG---TPMSPQ 95
++ ++ L + GE L +LG G GK +L +I+ G G I+LDG T + +
Sbjct: 29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIA----GFETPDSGRIMLDGQDITHVPAE 84
Query: 96 ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA 149
+FQ+ Y L P +TV + + + + + R+ + L +
Sbjct: 85 NRHVNTVFQS---YA-----LFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQ 133
Query: 150 LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L A+R +L+ + +RV I +V P +LLLDE LD
Sbjct: 134 LEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 66.0 bits (161), Expect = 6e-12
Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 19/220 (8%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS---SGTT-RGEIILDGTPM-SPQL- 96
L DISLE +V A++G G GK L ++R + G GEI+LDG + P +
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 97 ---FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ G V + + P E Y L + + R+ + L AL +
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAY---GLRVNGVKDKAYLAERVERSLRHAALWDE 138
Query: 154 ARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
+ + E L+ + +R+ I L +P +LL+DEP LDP++T I ++ R
Sbjct: 139 VKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKAR 198
Query: 210 KSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249
+ ++ + + V D TA+ +G LI GPT +
Sbjct: 199 YTIIIVTHNMQQAARV---SDVTAFFYMGKLIEVGPTEQI 235
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 65.4 bits (159), Expect = 8e-12
Identities = 55/223 (24%), Positives = 105/223 (47%), Gaps = 24/223 (10%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR--GEIILDGTPMSPQ---LF 97
L DI++++ ++ A++G+ G GK L +R + + G + ++G + Q
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA--- 154
+ G V + P++ V +++Y ++S P++ ++N + L L V
Sbjct: 78 RKNVGMVFQQ----PNVFV-KSIY--ENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFE 130
Query: 155 ------RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
++N L+ + +R+ I L P LLLLDEPT LDP+S+ +I +L +
Sbjct: 131 EVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH 190
Query: 209 RKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
S +++T + + D TA+ LG+LI G ++ E
Sbjct: 191 NLS-MIMVTHNMQQGKRVA--DYTAFFHLGELIEFGESKEFFE 230
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 67.5 bits (166), Expect = 8e-12
Identities = 59/188 (31%), Positives = 94/188 (50%), Gaps = 26/188 (13%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---- 93
Q +LK +SL+++ GE +A+LG G GK LL++++R +GEI+L+G P++
Sbjct: 351 QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD-PQQGEILLNGQPIADYSE 409
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
L Q V+ R L S T+ L AA P S + + +VL + L +
Sbjct: 410 AALRQAIS-VVSQRVHLF-SATLRDNLLLAA-----PNAS----DEALIEVLQQVGLEKL 458
Query: 154 ARRN------ISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
+ + E L+ E RR+ I L+ D LLLLDEPT LD + I+ +L
Sbjct: 459 LEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL 518
Query: 204 SSYAKRKS 211
+ +A+ K+
Sbjct: 519 AEHAQNKT 526
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 67.2 bits (164), Expect = 1e-11
Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 12/168 (7%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR-RSSGTTRGEIILDGT 90
+ FG ++ L I LEVRPGE + + G G+GK L++++S GT GEI G+
Sbjct: 9 KTFGGVKA---LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGS 65
Query: 91 PMSPQLFQTT----CGYVNHRTDLIPSLTVEQTLYYAAHLSI-GPQVSRYVRNARIRQVL 145
P+ + T ++ L+P L+V + ++ +++ G +++ R + +L
Sbjct: 66 PLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLL 125
Query: 146 ADLALS--NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191
+L L NV R + + + + V I L K LL+LDEP+ +L
Sbjct: 126 RELQLDADNVT-RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172
Score = 51.0 bits (122), Expect = 1e-06
Identities = 46/209 (22%), Positives = 90/209 (43%), Gaps = 18/209 (8%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS----PQLFQTT 100
D+S +R GE+L V G G+G+ L++ + G G + ++G P+ Q +
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG 337
Query: 101 CGYV---NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
V R ++P L V + + + S + +A + A+ + +
Sbjct: 338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSF---CFKMRIDAAAELQIIGSAIQRLKVKT 394
Query: 158 ------ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
I L+ ++ V+ L+ +P +L+LDEPT +D + Y I +++ A+
Sbjct: 395 ASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGV 454
Query: 212 RAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240
++++ E +VL DR + G L
Sbjct: 455 AIIVVSSELA--EVLGLSDRVLVIGEGKL 481
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 67.0 bits (164), Expect = 1e-11
Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 15/205 (7%)
Query: 18 LQHPALVETGSCFQRV-FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR 76
L P L + + G +L +SL++ PGE +A+LG GSGK LL ++
Sbjct: 330 LGKPTL-----ELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGL 384
Query: 77 SSGTTRGEIILDGTP---MSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVS 133
+GE+ LDG P + + L + TV + L A + ++
Sbjct: 385 LD-PLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDT-TVRENLRLARPDATDEELW 442
Query: 134 RYVRNARIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191
+ + L L L V + L+ E +R+ + L+ D +LLLDEPT +L
Sbjct: 443 AALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHL 502
Query: 192 DPLSTYLIVSMLSSYAKRKSRAVLL 216
D + ++ L A R V+L
Sbjct: 503 DAETADELLEDL--LAALSGRTVVL 525
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 65.2 bits (159), Expect = 2e-11
Identities = 41/171 (23%), Positives = 82/171 (47%), Gaps = 6/171 (3%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM--SPQLFQTT 100
L ++S E + G ++ LG G+GK +++I+ + G + + G + +P+ Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS-GSVQVCGEDVLQNPKEVQRN 76
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE 160
GY+ L + V + L + A + + + R+ +++ + L + I +
Sbjct: 77 IGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIGQ 133
Query: 161 LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
L+ +RV + L+ DP +L+LDEPT LDP I +++ + K K+
Sbjct: 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKT 184
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 64.5 bits (158), Expect = 2e-11
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 28/192 (14%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT-TRGEIILDG---TPMSPQ-- 95
ILK ++L V+ GEV A++G GSGK L I T GEI+ DG +SP
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 96 -------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL 148
FQ IP +T L A + G + +++ L
Sbjct: 79 ARAGIFLAFQYPVE--------IPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELL 130
Query: 149 ALS-NVARRNISE-LTPSEHRRVVIGTQLVKDPVLLLLDEPT--VNLDPLSTYLIVSMLS 204
L R ++E + E +R I L+ +P L +LDEP +++D L IV+
Sbjct: 131 GLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALK---IVAEGI 187
Query: 205 SYAKRKSRAVLL 216
+ + + R VL+
Sbjct: 188 NALREEGRGVLI 199
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 64.3 bits (157), Expect = 2e-11
Identities = 57/232 (24%), Positives = 105/232 (45%), Gaps = 34/232 (14%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDG 89
+G+ Q LK I+L++ +V A++G G GK L ++R S GE++LDG
Sbjct: 13 YGDFQA---LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69
Query: 90 T-----PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV----SRYVRNAR 140
+ + G V + + P +++ + Y GP+ + +
Sbjct: 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAY------GPRTHGIKDKKKLDEI 122
Query: 141 IRQVLADLAL----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196
+ + L AL + +++ L+ + +R+ I L +P +LL+DEPT LDP+ST
Sbjct: 123 VEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPIST 182
Query: 197 YLIVSMLSSYAKRKSRAVLLT--MEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
L + L K+ V++T M++ D+TA+ G+++ G T
Sbjct: 183 -LKIEELIQELKKDYTIVIVTHNMQQASR----ISDKTAFFLNGEIVEFGDT 229
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 65.3 bits (159), Expect = 2e-11
Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 10/180 (5%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS----PQLFQ 98
L ++SL V G++ V+G+ G+GK L+ ++ T+ G +I+DG ++ +L +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTS-GSVIVDGQDLTTLSNSELTK 79
Query: 99 T--TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
G + +L+ S TV + A L + ++ ++ ++LA + L +
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNV--ALPLELDNTPKDEIKR-KVTELLALVGLGDKHDS 136
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
S L+ + +RV I L +P +LL DE T LDP +T I+ +L +R +LL
Sbjct: 137 YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL 196
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 65.0 bits (158), Expect = 2e-11
Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 23/187 (12%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT---RGEIILDGTPMSPQ-- 95
+++ D+S + GE +LG G+GK I+R G RG+I + G P+ +
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGK----STIARMLLGMISPDRGKITVLGEPVPSRAR 73
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTL-----YYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
L + G V +L P TV + L Y+ +R + I +L L
Sbjct: 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS-------TREIEAV-IPSLLEFARL 125
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
+ A ++ L+ RR+ + L+ DP LL+LDEPT LDP + +LI L S R
Sbjct: 126 ESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR- 184
Query: 211 SRAVLLT 217
+ +LLT
Sbjct: 185 GKTILLT 191
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 64.5 bits (157), Expect = 2e-11
Identities = 57/235 (24%), Positives = 103/235 (43%), Gaps = 24/235 (10%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEV---ISRRSSGTTRGEIILDGTPMSPQLFQT 99
LK I++ ++ GEV A+LG G+GK L + I + SS G I+ DG P+ +
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS----GRILFDGKPID----YS 73
Query: 100 TCGYVNHRTDL-IPSLTVEQTLYYAA---HLSIGP---QVSRYVRNARIRQVLADLALSN 152
G + R + + + L+ A+ +S G ++ R+ L + +
Sbjct: 74 RKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH 133
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
+ + L+ + +RV I LV +P +L+LDEPT LDP+ I+ +L K
Sbjct: 134 LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL 193
Query: 213 AVLLTMEKPRSDVLP-FLDRTAYLCLGDLIYAGPTRLML---EYFRSIGFPCPEL 263
+++ D++P + D + G +I G + + E R + P +
Sbjct: 194 TIIIATHD--IDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRLPRI 246
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 63.7 bits (155), Expect = 3e-11
Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 15/218 (6%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSPQLF 97
LI+ + + PG + +LG GSGK LL +++ + G + L G +S +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAG-ALRPDAGTVDLAGVDLHGLSRRAR 73
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN-----ARIRQVLADLALSN 152
V +D LTV L P S + + A + + LA LS+
Sbjct: 74 ARRVALVEQDSDTAVPLTVRD----VVALGRIPHRSLWAGDSPHDAAVVDRALARTELSH 129
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
+A R++S L+ E +RV + L ++P LLLLDEPT +LD + ++++ A
Sbjct: 130 LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV- 188
Query: 213 AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
V+ + + + D L G ++ AGP R +L
Sbjct: 189 TVVAALHD-LNLAASYCDHVVVLDGGRVVAAGPPREVL 225
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 65.1 bits (158), Expect = 3e-11
Identities = 54/229 (23%), Positives = 103/229 (44%), Gaps = 14/229 (6%)
Query: 24 VETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG 83
+E G +++ +L +KD SL + GE+ ++G GSGK ++ +++R TRG
Sbjct: 25 IEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE-PTRG 83
Query: 84 EIILDGTPMSP-------QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYV 136
++++DG ++ ++ + V L+P +TV + L+
Sbjct: 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEE--- 140
Query: 137 RNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL-S 195
R + L + L N A EL+ +RV + L +P +LL+DE LDPL
Sbjct: 141 RREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR 200
Query: 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
T + ++ AK + V ++ + + + DR A + G+++ G
Sbjct: 201 TEMQDELVKLQAKHQRTIVFISHD--LDEAMRIGDRIAIMQNGEVVQVG 247
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 63.5 bits (155), Expect = 3e-11
Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 31/228 (13%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDG-----TPMS 93
LK+I+L++ +V A++G G GK LL ++R G+++ DG +
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV----SRYVRNARIRQVLADLA 149
+ G V + + P + Y GP++ + + + + L A
Sbjct: 77 VVELRRRVGMVFQKPNPFPMSIYDNIAY-------GPRLHGIKDKKELDEIVEESLKKAA 129
Query: 150 LSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
L + + + + L+ + +R+ I L +P +LLLDEPT LDP++T I ++
Sbjct: 130 LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE 189
Query: 206 YAKRKSRAVLLT--MEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
K+ + V++T M++ DRTA+ G+L+ GPT +
Sbjct: 190 LKKKYT-IVIVTHNMQQAAR----ISDRTAFFYDGELVEYGPTEQIFT 232
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 63.3 bits (155), Expect = 3e-11
Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 34/190 (17%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMS----PQ 95
L D+SL V PGE+ ++G G+GK +++VI +G TR G ++ GT ++ Q
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVI----TGKTRPDEGSVLFGGTDLTGLPEHQ 73
Query: 96 L--------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHL------SIGPQVSRYVRNARI 141
+ FQ + +LTV + L A S+ ++S ++ RI
Sbjct: 74 IARAGIGRKFQK--------PTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKD-RI 124
Query: 142 RQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201
+VL + L++ A R L+ + + + IG L++DP LLLLDEP + T
Sbjct: 125 EEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE 184
Query: 202 MLSSYAKRKS 211
+L S A + S
Sbjct: 185 LLKSLAGKHS 194
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 65.5 bits (160), Expect = 4e-11
Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 11/161 (6%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEV---ISRRSSGTTR--GEII--LDGTPMSP 94
+LK ISL++ GE++A++G+ GSGK L+ + + + +SGT R G+ + LD ++
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALA- 81
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
QL + G++ R L+ LT Q + A + + R R R +++L L L +
Sbjct: 82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPA---VYAGLERKQRLLRAQELLQRLGLEDRV 138
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
S+L+ + +RV I L+ ++L DEPT LD S
Sbjct: 139 EYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 64.3 bits (157), Expect = 4e-11
Identities = 58/269 (21%), Positives = 105/269 (39%), Gaps = 28/269 (10%)
Query: 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGY 103
+DIS E+ GE++ LG+ G+GK L++++ T+ G++ ++G P + Y
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS-GKVRVNG--KDPFRRREE--Y 95
Query: 104 VNH-------RTDLIPSLTVEQTLYYAAHL-SIGPQVSRYVRNARIRQVLADLALSNVAR 155
+ + L L +L + I R+ + L L +
Sbjct: 96 LRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFA----ERLDFLTEILDLEGFLK 151
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
+ +L+ + R + L+ P +L LDEPTV LD + I L Y + + VL
Sbjct: 152 WPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVL 211
Query: 216 LTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYF---RSIGFPCPELENPL----M 268
LT D+ DR + G L++ G + E F + EL+ +
Sbjct: 212 LTTHI-FDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSV---ELKQAKSLSQL 267
Query: 269 YYLCLSTVDRRSRERFIESNNQIVALVEK 297
L T++ + S + ++ K
Sbjct: 268 ALLGDVTIEEGLNIKNDVSREESADIIAK 296
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 63.2 bits (154), Expect = 4e-11
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 19/168 (11%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG------------ 89
+LK +SL+ G+V++++GS GSGK L I+ + G I ++G
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-PSAGSIRVNGEEIRLKRDKDGQ 79
Query: 90 -TPMSP---QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVL 145
P Q +T G V +L +TV + + A +G VS+ R + L
Sbjct: 80 LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLG--VSKAEAIERAEKYL 137
Query: 146 ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
A + ++ A + L+ + +RV I L +P ++L DEPT LDP
Sbjct: 138 AKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDP 185
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 62.9 bits (153), Expect = 5e-11
Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 17/172 (9%)
Query: 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQL 96
+IL +ISL ++PGEV+ ++G GSGK L ++I R G +++DG ++ P
Sbjct: 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-PENGRVLVDGHDLALADPAW 73
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNAR-------IRQVLADLA 149
+ G V L + ++ + A G + R + A+ I ++
Sbjct: 74 LRRQVGVVLQENVLF-NRSIRDNI---ALADPGMSMERVIEAAKLAGAHDFISEL--PEG 127
Query: 150 LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201
+ + L+ + +R+ I L+ +P +L+ DE T LD S + I+
Sbjct: 128 YDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMR 179
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 59.6 bits (145), Expect = 5e-11
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 14/125 (11%)
Query: 69 LLEVISRRSSGTTRGEIILDGTPM----SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAA 124
LL++I+ T G I+LDG S +L + G V L P LTV + L++
Sbjct: 3 LLKLITGLLQPT-SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFGL 61
Query: 125 HLSIGPQVSRYVRNARIRQVLADLALSNVARRN-ISELTPSEHRRVVIGTQLVKDPVLLL 183
+AR + L + L + R + L+ + +RV I L+K P LLL
Sbjct: 62 R--------DKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLL 113
Query: 184 LDEPT 188
LDEPT
Sbjct: 114 LDEPT 118
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 61.7 bits (151), Expect = 6e-11
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 17/179 (9%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMS---PQLFQ 98
+S + GE++ + G G+GK +LL ++ +G R GE++ G P+ + Q
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRIL----AGLARPDAGEVLWQGEPIRRQRDEYHQ 74
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
Y+ H+ + LT + L + L + + + LA + L+ +
Sbjct: 75 DLL-YLGHQPGIKTELTALENLRFYQRL------HGPGDDEALWEALAQVGLAGFEDVPV 127
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
+L+ + RRV + + L +LDEP +D + ++L+ +A++ +L T
Sbjct: 128 RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTT 186
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 62.5 bits (152), Expect = 6e-11
Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 11/188 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS-------P 94
IL + L V+ GE +A++G GSGK LL +++ G++ GE+ L G P+
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSS-GEVSLVGQPLHQMDEEARA 83
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
+L G+V LIP+L + + A L + SR RN + +L L L
Sbjct: 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSRN-GAKALLEQLGLGKRL 140
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
++L+ E +RV + P +L DEPT NLD + I +L S + +
Sbjct: 141 DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTL 200
Query: 215 LLTMEKPR 222
+L +
Sbjct: 201 ILVTHDLQ 208
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 64.1 bits (156), Expect = 7e-11
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 15/160 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+L + L VR G ++ ++G G+GK LL I+ + T G +++ G + L
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA-GTVLVAGDDVE-ALSARAA 75
Query: 102 GY----VNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVR-----NARIRQVLADLALSN 152
V T L V Q + P SR+ A + + + ++
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRT----PHRSRFDTWTETDRAAVERAMERTGVAQ 131
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
A R ++ L+ E +RV++ L + +LLLDEPT +LD
Sbjct: 132 FADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD 171
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 60.7 bits (148), Expect = 7e-11
Identities = 46/200 (23%), Positives = 75/200 (37%), Gaps = 54/200 (27%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDGTPMS---PQ 95
+L+++S + PGE LA++G GSGK L +I G T G + LDG +S P
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLI----LGLLRPTSGRVRLDGADISQWDPN 72
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
GY+ PQ D S
Sbjct: 73 ELGDHVGYL-------------------------PQ--------------DDELFSGSIA 93
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
NI L+ + +R+ + L +P +L+LDEP +LD + +++ + ++
Sbjct: 94 ENI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIV 151
Query: 216 LTMEKPRSDVLPFLDRTAYL 235
+ R + L DR L
Sbjct: 152 IAH---RPETLASADRILVL 168
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 62.2 bits (151), Expect = 8e-11
Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 20/220 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRA----LLEVISRRSSGTTRGEIILDGTPMSPQLF 97
+++D+SL V GE++ +LG G+GK ++ ++ R + G II+D +S
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA-----GNIIIDDEDISLLPL 72
Query: 98 QTTC----GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
GY+ + L+V L A L I +S R R +++ + + ++
Sbjct: 73 HARARRGIGYLPQEASIFRRLSVYDNL--MAVLQIRDDLSAEQREDRANELMEEFHIEHL 130
Query: 154 ARRNISE-LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
R ++ + L+ E RRV I L +P +LLDEP +DP+S I ++ + +
Sbjct: 131 -RDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII-EHLRDSGL 188
Query: 213 AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG-PTRLMLE 251
VL+T R + L +R + G LI G PT ++ +
Sbjct: 189 GVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEILQD 227
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 62.4 bits (151), Expect = 9e-11
Identities = 54/220 (24%), Positives = 99/220 (45%), Gaps = 23/220 (10%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDGTPM-SPQL 96
+LK+I+++ ++ A++G G GK LL ++R S G ++LD + SP L
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 97 ----FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
+ G V + + P + + L Q SR + + + L AL +
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQ-SRL--DEVVEKSLRQAALWD 135
Query: 153 VARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
+ N+ + L+ + +R+ I L +P ++L+DEP LDP+ST I ++ +
Sbjct: 136 EVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQ 195
Query: 209 RKSRAVLL--TMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
+ A++ + R+ D T +L GDL+ G T
Sbjct: 196 NYTIAIVTHNMQQAARAS-----DWTGFLLTGDLVEYGRT 230
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 62.0 bits (150), Expect = 1e-10
Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 22/230 (9%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR----GEIILDG 89
+GN + L ISL+ E+ A++G G GK L ++R + GEI +G
Sbjct: 14 YGNYEA---LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70
Query: 90 TPM-SPQL----FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV 144
+ ++ + G V + P +V + Y L I + + + R+ +
Sbjct: 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYG--LKIAGVKDKELIDQRVEES 127
Query: 145 LADLAL----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200
L A+ + RN + + +R+ I L P ++LLDEPT LDP+S+ I
Sbjct: 128 LKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIE 187
Query: 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
L K + +++T ++ + D+TA+L GDLI AGPT M
Sbjct: 188 ETLMEL-KHQYTFIMVTHNLQQAGRIS--DQTAFLMNGDLIEAGPTEEMF 234
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 61.0 bits (148), Expect = 1e-10
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 9/155 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGT--PMSPQLF 97
+L +++ + GE++ ++G G GK LL + +G + GE+ L+ M P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA-A 75
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
Q G + L P L+V Q L +A + + R L L ++
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFHQD 131
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ L+ + RV + L+ P LLLDEP LD
Sbjct: 132 PATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 62.7 bits (153), Expect = 2e-10
Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 9/156 (5%)
Query: 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQL 96
+I KDI+L++ GE + +G G GK LL +I+ T G++ + M+ P
Sbjct: 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED-ITSGDLFIGEKRMNDVPPA- 73
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
+ G V L P L+V + + + L+ + N R+ QV L L+++ R
Sbjct: 74 -ERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDR 129
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L+ + +RV IG LV +P + LLDEP NLD
Sbjct: 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 63.3 bits (154), Expect = 2e-10
Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 18/169 (10%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP-- 91
FG + LK ++L V PGE+ A+LG G+GK L++V+S T+G I ++
Sbjct: 15 FGPVHA---LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-PTKGTITINNINYN 70
Query: 92 -MSPQL-FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLS---IGPQVSRYVRNARIRQVLA 146
+ +L Q G + +I LTV + LY HL+ G + + +R A
Sbjct: 71 KLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDW---REMRVRAA 127
Query: 147 DLALSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191
+ L + ++ E L+ S + + I L+ D ++++DEPT +L
Sbjct: 128 MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
Score = 59.4 bits (144), Expect = 3e-09
Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 27/216 (12%)
Query: 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVI----SRRSSGTTRGEIILDGTPMSPQ---- 95
+DIS V GE+L G GSG+ L+ + R GEI L+G +SP+
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAG-----GEIRLNGKDISPRSPLD 334
Query: 96 LFQTTCGYV--NHR-TDLIPSLTVEQTLYYAAHLSIGP--------QVSRYVRNARIRQV 144
+ Y+ + R P+ ++ Q + + L G R A ++
Sbjct: 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRE 394
Query: 145 LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
L L +V +NI+EL+ ++V+I L P +++ DEPT +D + I ++
Sbjct: 395 LLALKCHSV-NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 205 SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240
A ++++ E P +++ DR A C G L
Sbjct: 454 QLADDGKVILMVSSELP--EIITVCDRIAVFCEGRL 487
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 61.6 bits (150), Expect = 2e-10
Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 25/220 (11%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDGT-----PMS 93
LK+I+L++ +V A +G G GK LL +R GEI+LDG
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
L + G V + P +++ + + L ++SR + R+ L AL N
Sbjct: 89 IALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLF--EKLSRAEMDERVEWALTKAALWNE 145
Query: 154 ARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
+ + + L+ + +R+ I + P +LLLDEP LDP+ST I +++ K+
Sbjct: 146 VKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQ 204
Query: 210 KSRAVLLT--MEKP-RSDVLPFLDRTAYLCLGDLIYAGPT 246
V++T M++ R D TA++ LG+LI G T
Sbjct: 205 DYTVVIVTHNMQQAARCS-----DYTAFMYLGELIEFGNT 239
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 61.1 bits (149), Expect = 2e-10
Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS----PQLF 97
+L+DISL++ GE +A++G GSGK L+ +I R + G I++DG + L
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDS-GRILIDGHDVRDYTLASL- 74
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL---SNVA 154
+ G V+ L + TV + + Y + +V R A + + +L + +
Sbjct: 75 RRQIGLVSQDVFLF-NDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIG 133
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
R + L+ + +R+ I L+KDP +L+LDE T LD S L+
Sbjct: 134 ERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV 177
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 61.3 bits (149), Expect = 2e-10
Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 33/227 (14%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----SGTTRGEIILDGTPM-SPQL- 96
L +SL+ P E+ A++G GSGK LL I+R + T G I+ +G + SP+
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 97 ---FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLS-------IGPQVSRYVRNARI----R 142
+ G V + + P +++ + + Y L + V + ++ A I +
Sbjct: 81 TVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK 139
Query: 143 QVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202
L D AL L+ + +RV I L P ++LLDEPT LDP+S I
Sbjct: 140 DRLHDSALG---------LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEET 190
Query: 203 LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249
L K +L+T ++ + DRT + GDLI T+ M
Sbjct: 191 LLGL-KDDYTMLLVTRSMQQASRIS--DRTGFFLDGDLIEYNDTKQM 234
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 61.2 bits (148), Expect = 2e-10
Identities = 59/221 (26%), Positives = 96/221 (43%), Gaps = 21/221 (9%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR----GEIIL---DGTPMS 93
LK+I++ V +V A++G G GK L +R GEIIL + +S
Sbjct: 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89
Query: 94 PQL----FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA 149
P++ + V + + P E Y L I R + R+ L + A
Sbjct: 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAY---GLRIRGVKRRSILEERVENALRNAA 146
Query: 150 LSNVARRNISEL----TPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
L + + + +L + + +R+ I L DP +LL DEPT LDP++T I ++S
Sbjct: 147 LWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISD 206
Query: 206 YAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
K++ +L + D TAY+ +G+LI G T
Sbjct: 207 L---KNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 62.0 bits (151), Expect = 2e-10
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 10/165 (6%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
+ FG Q +L DISL++ G+++A+LG GSGK LL +I+ T+ G I GT
Sbjct: 10 KSFGRTQ---VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS-GHIRFHGTD 65
Query: 92 MSP-QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSR---YVRNARIRQVLAD 147
+S G+V L +TV + A L++ P+ R A++ Q+L
Sbjct: 66 VSRLHARDRKVGFVFQHYALFRHMTVFDNI--AFGLTVLPRRERPNAAAIKAKVTQLLEM 123
Query: 148 LALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ L+++A R ++L+ + +RV + L +P +LLLDEP LD
Sbjct: 124 VQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD 168
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 61.1 bits (148), Expect = 2e-10
Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 19/221 (8%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----SGTTRGEIILDGTPM-SPQL- 96
LK I L+ E+ A++G G GK L ++R + T G + L G + +P
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 97 ---FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ G V + + P E +Y L + + V + + L A+ +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIY---GLRLAGVKDKAVLDEAVETSLKQAAIWDE 137
Query: 154 ARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
+ ++ E L+ + +RV I L P ++LLDEPT LDP+S+ I +ML +
Sbjct: 138 VKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL-RD 196
Query: 210 KSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
+ +L+T ++ + D+TA+ G+LI T+ M
Sbjct: 197 QYTIILVTHSMHQASRIS--DKTAFFLTGNLIEFADTKQMF 235
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 60.4 bits (147), Expect = 3e-10
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 27/159 (16%)
Query: 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDG---TPMSPQ----- 95
L V GE +A+LG G+GK LL +I +G G + L+G T P
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLI----AGFLTPASGSLTLNGQDHTTTPPSRRPVS 74
Query: 96 -LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
LFQ +L LTV Q + L+ G +++ R ++ + + + ++
Sbjct: 75 MLFQ--------ENNLFSHLTVAQNI--GLGLNPGLKLNAAQR-EKLHAIARQMGIEDLL 123
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
R +L+ + +RV + LV++ +LLLDEP LDP
Sbjct: 124 ARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDP 162
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 61.1 bits (148), Expect = 3e-10
Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 27/225 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLE----VISRRSSGTTRGEIILDGTPMSPQL-- 96
LK+I+L + EV A++G G GK ++ +I + GE+ +G+ +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 97 ---FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV----SRYVRNARIRQVLADLA 149
+ G V + + P + Y GP++ ++ + + L D+A
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAY-------GPRIHGTKNKKKLQEIVEKSLKDVA 140
Query: 150 LSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
L + + + L+ + +R+ I L +P +LL+DEPT LDP+ST I ++
Sbjct: 141 LWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK 200
Query: 206 YAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
K K V++T ++ + D+TA+ +G+L+ T M
Sbjct: 201 L-KEKYTIVIVTHNMQQAARVS--DQTAFFYMGELVECNDTNKMF 242
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 61.2 bits (149), Expect = 3e-10
Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 35/225 (15%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----SGTTRGEIILDGTPMS-PQL- 96
L DIS+ + V A +G G GK LL +R + + GEI LDG + ++
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100
Query: 97 ---FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ G V R + P E +Y G ++ + N R+ + +L
Sbjct: 101 VAELRRRVGMVFQRPNPFPKSIYENVVY-------GLRLQG-INNRRVLDEAVERSLRGA 152
Query: 154 A---------RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
A N L+ + +R+VI + +P +LLLDEPT LDP+ST L + L
Sbjct: 153 ALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIST-LKIEELI 211
Query: 205 SYAKRKSRAVLLT--MEK-PRSDVLPFLDRTAYLCLGDLIYAGPT 246
+ K K V++T M++ R D TA++ +G L+ G T
Sbjct: 212 TELKSKYTIVIVTHNMQQAARVS-----DYTAFMYMGKLVEYGDT 251
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 60.4 bits (147), Expect = 3e-10
Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 15/160 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
IL D+SL + G++ A++G G GK LL+ +R + + G + L P+S +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQS-GTVFLGDKPIS----MLSS 71
Query: 102 GYVNHRTDLIPS-------LTVEQTLYY--AAHLSIGPQVSRYVRNARIRQVLADLALSN 152
+ R L+P +TV + + Y + LS+ ++S AR+ Q + +++
Sbjct: 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDN-ARVNQAMEQTRINH 130
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+A R +++L+ + +R + L +D ++LLDEPT LD
Sbjct: 131 LADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 60.6 bits (148), Expect = 4e-10
Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 56/237 (23%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDGT-----PM 92
LKDI+L++ +V A++G G GK LL ++R GE++LDG +
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 93 SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVR---NARIRQVLADLA 149
+ G V + + P ++Y +++ G ++ + + L A
Sbjct: 82 DVVELRRRVGMVFQKPNPFP-----MSIY--DNVAYGLRLHGIKDKELDEIVESSLKKAA 134
Query: 150 LSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY----LIVS 201
L + + + + L+ + +R+ I L P +LL+DEPT LDP+ST LI
Sbjct: 135 LWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITE 194
Query: 202 MLSSY-----------AKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+ Y A R S D TA+ LG+L+ GPT
Sbjct: 195 LKKKYTIVIVTHNMQQAARVS------------------DYTAFFYLGELVEFGPTD 233
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 59.9 bits (145), Expect = 5e-10
Identities = 51/227 (22%), Positives = 104/227 (45%), Gaps = 27/227 (11%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIILDGTPMSPQLF 97
+K++++++ ++ A++G G GK LL I+R + G+I G +
Sbjct: 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77
Query: 98 QTT-----CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV----SRYVRNARIRQVLADL 148
T G V + P ++Y +++ GP++ S++ + + + L
Sbjct: 78 DVTEYRKKVGMVFQKPTPFP-----MSIY--DNVAFGPRIHGVKSKHKLDRIVEESLKKA 130
Query: 149 ALSNVAR----RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
AL + + + + L+ + +R+ I L +P ++LLDEPT LDP++T I +L
Sbjct: 131 ALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLE 190
Query: 205 SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
++ + ++ + D A++ G+LI GPTR ++E
Sbjct: 191 ELSENYTIVIV---THNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 61.9 bits (151), Expect = 5e-10
Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 7/155 (4%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISR-RSSGTTRGEIILDGTPMSPQLFQTT- 100
L ++SL+VR GE++++ G G+GK L++V+S GT GEII +G + + T
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80
Query: 101 -CGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARR 156
G + L+ L+V + ++ ++ G + R +++LA L L N A
Sbjct: 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP 140
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191
+ L + + V I L K LL+LDEPT +L
Sbjct: 141 -VGNLGLGQQQLVEIAKALNKQARLLILDEPTASL 174
Score = 45.7 bits (109), Expect = 6e-05
Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 36/212 (16%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---SP-QLF 97
+ D+S +R GE+L + G G+G+ L++ + G GEI +DG P+ +P Q
Sbjct: 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336
Query: 98 QTTCGYV---NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NV 153
V R ++P + V + + AA + R+ +RI D A
Sbjct: 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAA-------LDRFTGGSRI-----DDAAELKT 384
Query: 154 ARRNISEL---TPSEHRRV-----------VIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
+I L T S + V+ L+ +P +L+LDEPT +D + Y I
Sbjct: 385 ILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEI 444
Query: 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDR 231
+++ ++ ++++ E P +VL DR
Sbjct: 445 YKLINQLVQQGVAIIVISSELP--EVLGLSDR 474
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 59.3 bits (144), Expect = 6e-10
Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 19/195 (9%)
Query: 29 CFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILD 88
Q V A IL +IS +R GE + G G GK LL++++ S T G ++ +
Sbjct: 9 QLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS-PTSGTLLFE 67
Query: 89 GTP---MSPQLFQTTCGYVNHRTDLIPSL---TVEQTLYYAAHL-SIGPQVSRYVRNARI 141
G + P++++ Y P+L TV L + + + P + ++ +
Sbjct: 68 GEDISTLKPEIYRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDD--- 120
Query: 142 RQVLADLAL-SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200
L AL + +NI+EL+ E +R+ + L P +LLLDE T LD + + +
Sbjct: 121 ---LERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVN 177
Query: 201 SMLSSYAKRKSRAVL 215
++ Y + ++ AVL
Sbjct: 178 EIIHRYVREQNIAVL 192
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 59.6 bits (145), Expect = 7e-10
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 22/160 (13%)
Query: 46 ISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVN 105
+S EVR GE+L ++G G+GK LL ++ G+ G I G P+ +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS--GSIQFAGQPLE-AW--SAAELAR 69
Query: 106 HRTDLI------PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS 159
HR L ++ V Q Y H + + + +V L L + R+++
Sbjct: 70 HRAYLSQQQTPPFAMPVFQ--YLTLHQPDKTRT--EAVASALNEVAEALGLDDKLGRSVN 125
Query: 160 ELTPSEHRRV-VIGTQLVKDPV------LLLLDEPTVNLD 192
+L+ E +RV + L P LLLLDEP +LD
Sbjct: 126 QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD 165
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 59.5 bits (144), Expect = 7e-10
Identities = 52/233 (22%), Positives = 103/233 (44%), Gaps = 30/233 (12%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDG-----TPM 92
IL DI+L++ EV A +G G GK L +R + +GE+ +DG
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 93 SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
+ L + G V + + P + Y GP++ +N + + + +L++
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAY-------GPKLHGLAKNKKKLDEIVEKSLTS 132
Query: 153 VA---------RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
V + + EL+ + +R+ I + P +LL+DEP LDP++T +I +++
Sbjct: 133 VGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLI 192
Query: 204 SSYAKRKSRAVLL-TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRS 255
K + V+ +M++ + DR A+ G ++ T+ + + +S
Sbjct: 193 QELKKNFTIIVVTHSMKQAKK----VSDRVAFFQSGRIVEYNTTQEIFKNPQS 241
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 59.3 bits (144), Expect = 8e-10
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 26/188 (13%)
Query: 45 DISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPMSP-QLFQT 99
D++L ++ GEVLA++G GSGK A+L ++ + T GEI+LDG P+ P +
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT-QTSGEILLDGRPLLPLSIRGR 62
Query: 100 TCGYV--NHRTDLIPSLTVEQ----TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ N RT P T+ TL LS + A I + L + L +
Sbjct: 63 HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQAR-------ALILEALEAVGLPDP 115
Query: 154 ARRNISELTPSEH-----RRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
+ + P + +RV+I L+ +P L+ DEPT +LD ++ ++ +L +
Sbjct: 116 EE--VLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 209 RKSRAVLL 216
+LL
Sbjct: 174 LFGTGILL 181
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 59.4 bits (144), Expect = 9e-10
Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---SPQLFQ 98
+L +SL G+V ++G GSGK LL+++ R + GEI+LD P+ S + F
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSE-GEILLDAQPLESWSSKAFA 84
Query: 99 TTCGYVNHRTDLIPSLTVEQTL---YYAAHLSIGPQVSRYVRN--ARIRQVLADLALSNV 153
Y+ + +TV + + Y H ++G R+ ++ + ++ + L +
Sbjct: 85 RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALG----RFGAADREKVEEAISLVGLKPL 140
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
A R + L+ E +R I + +D LLLDEPT LD
Sbjct: 141 AHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 59.1 bits (143), Expect = 1e-09
Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 27/226 (11%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDGTPMS----- 93
L DI++ + V A++G G GK LL +R G+I+ +G +
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV----SRYVRNARIRQVLADLA 149
+ G V R + P E Y GP++ ++ + + + L A
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAY-------GPRIHGEKNKKTLDTIVEKSLKGAA 134
Query: 150 LSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
L + + + + L+ + +R+ I L +P ++L+DEP LDP++T I ++
Sbjct: 135 LWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194
Query: 206 YAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
K + ++ + + V D T ++ LG LI T + E
Sbjct: 195 LKKEYTVIIVTHNMQQAARV---SDYTGFMYLGKLIEFDKTTQIFE 237
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 60.2 bits (146), Expect = 1e-09
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 15/141 (10%)
Query: 58 VLGSKGSGKRALLEVIS---RRSSGTTRGEIILDGTPMS---PQLFQTTCGYVNHRTDLI 111
+LG G GK LL +++ + SG I+LDG ++ P L V L
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSG----SIMLDGEDVTNVPPHL--RHINMVFQSYALF 54
Query: 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVI 171
P +TVE+ + + + +V R R+ + L + L A R +L+ + +RV +
Sbjct: 55 PHMTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVAL 111
Query: 172 GTQLVKDPVLLLLDEPTVNLD 192
LV P +LLLDEP LD
Sbjct: 112 ARALVFKPKILLLDEPLSALD 132
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 59.1 bits (143), Expect = 1e-09
Identities = 61/256 (23%), Positives = 100/256 (39%), Gaps = 40/256 (15%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVI------SRRSSGTT-RGEIILDGTPM-- 92
IL+D+SL + PG V A+LG G+GK LL+ + G G++ L+G P+
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 93 --SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHL-SIG--PQVSRYVRNARIRQVLAD 147
+P+L + ++P + A + +G P R +A
Sbjct: 76 IDAPRLAR--------LRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAW 127
Query: 148 LAL-----SNVARRNISELTPSEHRRVVIGTQLVK---------DPVLLLLDEPTVNLDP 193
AL + + R+++ L+ E RV L + P LLLDEPT LD
Sbjct: 128 QALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDL 187
Query: 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE-- 251
+ ++ + A+ + VL + P DR A L G ++ G +L
Sbjct: 188 AHQHRLLDTVRRLARDWNLGVLAIVHDPNL-AARHADRIAMLADGAIVAHGAPADVLTPA 246
Query: 252 -YFRSIGFPCPELENP 266
R GF ++
Sbjct: 247 HIARCYGFAVRLVDAG 262
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 59.0 bits (143), Expect = 1e-09
Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 25/223 (11%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
FG Q A +L ++SL + GE + +LG G GK L ++ +G + G +
Sbjct: 18 FGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK-PAQGTVSFRGQDLY 76
Query: 94 P-------------QL-FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNA 139
QL FQ + VN P +TV Q + L + + A
Sbjct: 77 QLDRKQRRAFRRDVQLVFQDSPSAVN------PRMTVRQII--GEPLRHLTSLDESEQKA 128
Query: 140 RIRQVLADLAL-SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198
RI ++L + L S A + +L+ + +R+ I L P L++LDE NLD + +
Sbjct: 129 RIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAV 188
Query: 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI 241
I+ +L + A L R V F R A + G ++
Sbjct: 189 ILELLRKLQQAFGTAYLFITHDLRL-VQSFCQRVAVMDKGQIV 230
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 58.3 bits (142), Expect = 1e-09
Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKR---ALLEVISRRSSGTTRGEIILDGTPMS---PQ 95
ILK +SL + PG+ +A++GS G GK +LLE R T GEI+LDG + +
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE----RFYDPTSGEILLDGVDIRDLNLR 73
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL--ALSNV 153
++ G V+ L T+ + + Y + +V + A I + L +
Sbjct: 74 WLRSQIGLVSQEPVLF-DGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTL 132
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
S+L+ + +R+ I L+++P +LLLDE T LD S L+
Sbjct: 133 VGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV 178
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 59.0 bits (142), Expect = 1e-09
Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 17/212 (8%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTR-GEIILDGTPMSPQL-- 96
L DI LEV+ G A++G GSGK LL+ ++ + + G G+I++ T ++
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ---VSRYVRNARIRQVLADLALSN- 152
+ G V + S E+T+ ++ GPQ + + + L + L++
Sbjct: 82 VRKKVGVVFQFPE---SQLFEETVL--KDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADE 136
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
++ EL+ + RRV I L +P +L+LDEPT LDP + ++ + S +
Sbjct: 137 FWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQT 196
Query: 213 AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
VL+T DV + D L G +I G
Sbjct: 197 VVLVT--HLMDDVADYADYVYLLEKGHIISCG 226
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 58.4 bits (141), Expect = 2e-09
Identities = 53/228 (23%), Positives = 102/228 (44%), Gaps = 30/228 (13%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT----RGEIILDGTPMSPQ--- 95
L DI+L + ++ A++G G GK L ++R + + GE++LDG + +
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 96 --LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ G V + + P + Y GP++ +++ + + + AL
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAY-------GPRIHG-IKDKKELDKIVEWALKKA 131
Query: 154 A---------RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
A +++ +L+ + +R+ I + P ++L+DEPT LDP+ST I ++
Sbjct: 132 ALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMV 191
Query: 205 SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT-RLMLE 251
K + ++ + S V D TA+ +GDLI T ++ LE
Sbjct: 192 ELKKEYTIVIVTHNMQQASRV---SDYTAFFLMGDLIEFNKTEKIFLE 236
>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter.
Length = 210
Score = 57.7 bits (140), Expect = 2e-09
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 2/149 (1%)
Query: 346 SFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLPF 405
++R GL+F SI + F S + F R +E LYS ++L I LP
Sbjct: 48 GGLNRPGLLFFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPI 107
Query: 406 SILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSS 465
S+L I++ GL + F F L+L L A L + + + S A+ +
Sbjct: 108 SLLQAIIFLLIVYFMVGL-PVSRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGP 166
Query: 466 YINIIFLVLGSGYLRSFRSMAEWLVYMSY 494
+ + L+L SG+ SM WL ++ Y
Sbjct: 167 LLLLPLLLL-SGFFIPVDSMPGWLQWIYY 194
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 58.5 bits (142), Expect = 2e-09
Identities = 61/248 (24%), Positives = 111/248 (44%), Gaps = 48/248 (19%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ------- 95
L ++++E+ GE + ++G GSGK L++ ++ T+ G+II+DG ++ +
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS-GKIIIDGVDITDKKVKLSDI 81
Query: 96 ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ---VSRYVRNARIRQVLA 146
+FQ Y ++ E+T+ ++ GP +S R+++ +
Sbjct: 82 RKKVGLVFQ----YPEYQL-------FEETIE--KDIAFGPINLGLSEEEIENRVKRAMN 128
Query: 147 DLALSNVARRNIS--ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
+ L ++ S EL+ + RRV I + +P +L+LDEPT LDP I++ +
Sbjct: 129 IVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIK 188
Query: 205 SYAKRKSRAVLL---TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFR------S 255
K + ++L +ME DV DR + G G R E F+ S
Sbjct: 189 ELHKEYNMTIILVSHSME----DVAKLADRIIVMNKGKCELQGTPR---EVFKEVETLES 241
Query: 256 IGFPCPEL 263
IG P++
Sbjct: 242 IGLAVPQV 249
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 58.4 bits (142), Expect = 2e-09
Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 47/164 (28%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDG 89
FG + + +S ++ GE L ++G G GK R +L + T GEI+ +G
Sbjct: 20 FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE-----EPTSGEILFEG 74
Query: 90 TPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA 149
++ ++S+ R R+ ++L +
Sbjct: 75 KDIT-------------------------------------KLSKEERRERVLELLEKVG 97
Query: 150 LS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L R EL+ + +R+ I L +P L++ DEP LD
Sbjct: 98 LPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALD 141
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 59.7 bits (145), Expect = 2e-09
Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---SPQLF 97
L ++L VRPGE +A++G G+GK L +++ R G I+LDG + P
Sbjct: 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD-PQSGRILLDGVDLRQLDPAEL 412
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA---LSNVA 154
+ V L + +V + + Y + +V R A + ++ L + +
Sbjct: 413 RARMALVPQDPVLF-AASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLG 471
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
R ++ L+ + +R+ I ++KD +LLLDE T LD S L+
Sbjct: 472 ERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLV 515
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 58.1 bits (140), Expect = 2e-09
Identities = 56/233 (24%), Positives = 105/233 (45%), Gaps = 29/233 (12%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
R++ I ILKDI++++ + ++G GSGK LL+V++R +I +DG
Sbjct: 15 RLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-IYDSKIKVDGKV 73
Query: 92 M--SPQLFQTTC-------GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIR 142
+ +FQ G V + + P L++ + Y P S ++ R
Sbjct: 74 LYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAY-------PLKSHGIKEKREI 126
Query: 143 QVLADLALSNVA-------RRN--ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
+ + + L V R N S+L+ + +R+ I L P +LL+DEPT +D
Sbjct: 127 KKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI 186
Query: 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
+++ I +++ + A+++ P+ V D A+L G+L+ G +
Sbjct: 187 VNSQAIEKLITEL--KNEIAIVIVSHNPQQ-VARVADYVAFLYNGELVEWGSS 236
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 57.8 bits (140), Expect = 3e-09
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 30/164 (18%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVI---SRRSSGTTRGEIILDGT 90
FG + +L D+SLE++PG++L +LG G+GK L+ V+ G +
Sbjct: 14 FGQRR---VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK-------- 62
Query: 91 PMSPQLFQTTCGYVNHRTDLIPS--LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL 148
+ +L GYV + L + LTV + L ++ + I L +
Sbjct: 63 -RNGKL---RIGYVPQKLYLDTTLPLTVNRFL----------RLRPGTKKEDILPALKRV 108
Query: 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
++ + +L+ E +RV++ L+ P LL+LDEPT +D
Sbjct: 109 QAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 57.7 bits (140), Expect = 3e-09
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 14/208 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIILDGTPMSPQL-FQ 98
LK IS + GE++ +G G+GK L+++S + +SG R + P + F
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVR---VAGLVPWKRRKKFL 93
Query: 99 TTCGYV-NHRTDLIPSLTVEQTLYYAAHL-SIGPQVSRYVRNARIRQVLADLALSNVARR 156
G V +T L L V + Y A + + P +R+ + R+ ++ L L +
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP--ARFKK--RLDELSELLDLEELLDT 149
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+ +L+ + R I L+ +P +L LDEPT+ LD ++ I + L Y + + VLL
Sbjct: 150 PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLL 209
Query: 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
T + D+ R + G L+Y G
Sbjct: 210 TSHYMK-DIEALARRVLVIDKGRLLYDG 236
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 58.1 bits (141), Expect = 3e-09
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 22/222 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSPQLFQ 98
L +SLE+ G+ + V+GS G+GK LL I+ T G+I++DG T S
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-PTSGQILIDGVDVTKKSVAKRA 79
Query: 99 TTCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSR---YVRNARIRQVLA--DLALS 151
V + P LT+E+ L A +S R + R+ LA L L
Sbjct: 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE 139
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS--YAKR 209
N I L+ + + + + + P +LLLDE T LDP T V L++ +
Sbjct: 140 NRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDP-KTAEFVMELTAKIVEEH 198
Query: 210 KSRAVLLT--MEKPRSDVLPFLDRTAYLCLGDLI--YAGPTR 247
K +++T ME D L + +R L G ++ G +
Sbjct: 199 KLTTLMVTHNME----DALDYGNRLIMLHSGKIVLDVTGEEK 236
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 57.9 bits (140), Expect = 3e-09
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 9/156 (5%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
+K +S +R G+ LA++G GSGK L ++++ T+ GEI+++ P+ +
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS-GEILINDHPLHFGDYSFRSK 87
Query: 103 YV-----NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL-SNVARR 156
+ + T L P L + Q L L + + R +I + L + L + A
Sbjct: 88 RIRMIFQDPNTSLNPRLRIGQIL--DFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY 145
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L P + +RV + L+ P +++ DE +LD
Sbjct: 146 YPHMLAPGQKQRVALARALILRPKIIIADEALASLD 181
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 57.1 bits (138), Expect = 4e-09
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 23/189 (12%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTR---GEIILDGTPMSP- 94
+L+++SL V GE + + G GSGK LL + G +D P
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 95 ---QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
++ +TT GYV+ +IP ++ L A + V R V A+ +L L
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVS---ALDVVAEPLLARGVPREVARAKAADLLTRL--- 139
Query: 152 NVARRNISELTPS-----EHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
N+ R + L P+ E +RV I + D +LLLDEPT +LD + ++V ++
Sbjct: 140 NLPER-LWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE- 197
Query: 207 AKRKSRAVL 215
AK + A++
Sbjct: 198 AKARGAALV 206
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 58.6 bits (142), Expect = 4e-09
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 22 ALVETGSCFQRVFGNIQTALIL--KDISLEVRPGEVLAVLGSKGSGKRALLE------VI 73
AL++ G + + +T L+L + SL++ GE+ ++G GSGK LL +
Sbjct: 19 ALLDQGKTREEI--LDRTGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPV 76
Query: 74 SRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIG 129
SR S G+ +D L V + L+P TVE+ + + +
Sbjct: 77 SRGSVLVKDGDGSVDVANCDAATLRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQ-- 134
Query: 130 PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189
+ + R R+ + L + L+ A R EL+ +RV + + +LL+DEP
Sbjct: 135 -GMPKAERRKRVDEQLELVGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFS 193
Query: 190 NLDPL 194
LDPL
Sbjct: 194 ALDPL 198
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 57.4 bits (139), Expect = 4e-09
Identities = 48/176 (27%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRAL---LEVISRRSSGTTRGEIILDGTPM-----SP 94
LK I+ + GE++A+LG G+GK L I + +SG E+++ G P+ S
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSG----EVLIKGEPIKYDKKSL 73
Query: 95 QLFQTTCGYV-NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ T G V + D + + TVE+ + + L++G +S+ R+++ L + +
Sbjct: 74 LEVRKTVGIVFQNPDDQLFAPTVEEDVAFGP-LNLG--LSKEEVEKRVKEALKAVGMEGF 130
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
+ L+ + +RV I L P +++LDEPT LDP+ I+ +L K
Sbjct: 131 ENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE 186
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 56.9 bits (137), Expect = 5e-09
Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 34/229 (14%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTC 101
L + L + GE++A+LG GSGK LL R SG G D + S +L T
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLL----RHLSGLITG----DKSAGSHIELLGRTV 71
Query: 102 -----------------GYVNHRTDLIPSLTVEQTLYYAAHLSIGP---QVSRY---VRN 138
GY+ + +L+ L+V + + A L P + +
Sbjct: 72 QREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA-LGSTPFWRTCFSWFTREQK 130
Query: 139 ARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198
R Q L + + + A + +S L+ + +RV I L++ ++L DEP +LDP S +
Sbjct: 131 QRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARI 190
Query: 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
++ L + V++T+ + L + +R L G + Y G ++
Sbjct: 191 VMDTLRDINQNDGITVVVTLHQVDY-ALRYCERIVALRQGHVFYDGSSQ 238
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 56.4 bits (137), Expect = 6e-09
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 31/196 (15%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQLFQT 99
L ++SL +R GE +A++G GSGK LL++++ T G ++LDGT + P +
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-PTSGSVLLDGTDIRQLDPADLRR 78
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN-- 157
GYV L T+ + A + RI + +++ ++
Sbjct: 79 NIGYVPQDVTLF-YGTLRDNITLGA---------PLADDERILRAAELAGVTDFVNKHPN 128
Query: 158 -----ISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
I E L+ + + V + L+ DP +LLLDEPT +D S + L
Sbjct: 129 GLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG 188
Query: 209 RKS------RAVLLTM 218
K+ R LL +
Sbjct: 189 DKTLIIITHRPSLLDL 204
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 57.1 bits (138), Expect = 6e-09
Identities = 57/212 (26%), Positives = 100/212 (47%), Gaps = 17/212 (8%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
L D++L + G A +G GSGK ++++++ T G + +D T ++
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ-GSVRVDDTLITSTSKNKDIK 81
Query: 103 YVNHRTDLI----PSLTVEQTLYYAAHLSIGPQ---VSRYVRNARIRQVLADLALS-NVA 154
+ + L+ S E+T+ ++ GPQ VS+ A R+ LA + +S ++
Sbjct: 82 QIRKKVGLVFQFPESQLFEETVL--KDVAFGPQNFGVSQEEAEALAREKLALVGISESLF 139
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
+N EL+ + RRV I L +P +L+LDEPT LDP ++++ + V
Sbjct: 140 EKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIV 199
Query: 215 LLT--MEKPRSDVLPFLDRTAYLCLGDLIYAG 244
L+T M+ DV + D L G L+ +G
Sbjct: 200 LVTHLMD----DVANYADFVYVLEKGKLVLSG 227
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 56.5 bits (137), Expect = 6e-09
Identities = 47/209 (22%), Positives = 80/209 (38%), Gaps = 46/209 (22%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS-RRSSGTTRGEIILDG---TPMSPQ-- 95
ILK ++L V+ GE+ A++G GSGK L + I+ S T G I+ G + P
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74
Query: 96 -------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL 148
FQ + IP ++ + L A + R+AR + L L
Sbjct: 75 ARAGLFLAFQY--------PEEIPGVSNLEFLRSALNA---------RRSARGEEPLDLL 117
Query: 149 ALSNVARRNISELTPSE---HRRVVIG------------TQLVKDPVLLLLDEPTVNLDP 193
+ + ++ L E +R V G + +P L +LDE LD
Sbjct: 118 DFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDI 177
Query: 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPR 222
+ ++ ++ + R+ L+ R
Sbjct: 178 DALKIVAEGINRL-REPDRSFLIITHYQR 205
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 56.3 bits (136), Expect = 7e-09
Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 55/220 (25%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKR---ALLEVISRRSSGTTRGEIILDGTPMSPQLF 97
L+L+D+S + PGEV A++G GSGK ALLE G+++LDG P+S
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLE----NFYQPQGGQVLLDGKPIS---- 79
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV---- 153
Q Y+ H + + E L+ +R +++ I L + V
Sbjct: 80 QYEHKYL-HSK--VSLVGQEPVLF-----------ARSLQD-NIAYGLQSCSFECVKEAA 124
Query: 154 ----ARRNISE---------------LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194
A ISE L+ + +RV I L+++P +L+LDE T LD
Sbjct: 125 QKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184
Query: 195 STYLIVSMLSSYAKRKSRAV----LLTMEKPRSDVLPFLD 230
S + L + +R++ V L T+E R+D + LD
Sbjct: 185 SEQQVQQALYDWPERRTVLVIAHRLSTVE--RADQILVLD 222
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 56.7 bits (137), Expect = 7e-09
Identities = 53/226 (23%), Positives = 99/226 (43%), Gaps = 24/226 (10%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS----GTTRGEIILD-----GTPMSPQ 95
D++L + P V A +G G GK +L ++R GE++LD G + P
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
+ T G V R + P++++ + A L + ++ + + + L L N +
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNV--VAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK 139
Query: 156 RNI----SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
+ L+ + +R+ I + +P +LL+DEP LDP+ST L + L + K+
Sbjct: 140 DRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPIST-LAIEDLINELKQDY 198
Query: 212 RAVLLTMEKPRSDVLPFLDRTAYLCL------GDLIYAGPTRLMLE 251
V++T ++ + D+TA+ L G L+ T +
Sbjct: 199 TIVIVTHNMQQAARVS--DQTAFFNLEATGKPGRLVEIDDTEKIFS 242
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 58.0 bits (141), Expect = 7e-09
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 11/156 (7%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
L DIS + R G+V A++G G+GK LL+++S G I++DG M F +T
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA-GSILIDGQEMR---FASTTA 75
Query: 103 YVNH-------RTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
+ L+P +TV + LY G V+R + N R+ L L +
Sbjct: 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPD 135
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191
+ L+ + + V I L ++ ++ DEPT +L
Sbjct: 136 TPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSL 171
Score = 36.0 bits (84), Expect = 0.057
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 46 ISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMSP 94
IS VR GE++ + G G+G+ L++++ G TR G++ LDG P+
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLL----YGATRRTAGQVYLDGKPIDI 319
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 56.5 bits (136), Expect = 8e-09
Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 20/195 (10%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------- 94
+LK +SL+ G+V++++GS GSGK L I+ + G I+++G ++
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-PSEGSIVVNGQTINLVRDKDGQ 78
Query: 95 ---------QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVL 145
+L +T V +L +TV + + A +G +S+ R + L
Sbjct: 79 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG--LSKQEARERAVKYL 136
Query: 146 ADLALSNVAR-RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
A + + A+ + L+ + +RV I L +P +LL DEPT LDP ++ ++
Sbjct: 137 AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQ 196
Query: 205 SYAKRKSRAVLLTME 219
A+ V++T E
Sbjct: 197 QLAEEGKTMVVVTHE 211
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 55.6 bits (134), Expect = 9e-09
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 7/176 (3%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+ + V GE L V G G+GK LL V++ G+I +DG +
Sbjct: 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH-VESGQIQIDGKTATRGDRSRFM 84
Query: 102 GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISEL 161
Y+ H L L+ + L++ L G + + +A LA + L+ + +L
Sbjct: 85 AYLGHLPGLKADLSTLENLHFLCGLH-GRRAKQMPGSA-----LAIVGLAGYEDTLVRQL 138
Query: 162 TPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
+ + +R+ + + L LLDEP NLD L+ M+S++ + A++ T
Sbjct: 139 SAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTT 194
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 55.8 bits (135), Expect = 1e-08
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 32/179 (17%)
Query: 33 VFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDG 89
+ G Q +L ++SL ++ GE +A+LG G GK L +R G ++G + G
Sbjct: 18 LSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTL----ARLLVGLESPSQGNVSWRG 73
Query: 90 TPMSP-------------QL-FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRY 135
P++ Q+ FQ + VN R + + + L HL + +
Sbjct: 74 EPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREII--REPL---RHLL---SLDKA 125
Query: 136 VRNARIRQVL--ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R AR ++L DL S + +R +L+ + +RV + L +P LL+LDE NLD
Sbjct: 126 ERLARASEMLRAVDLDDSVLDKRP-PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 57.0 bits (138), Expect = 2e-08
Identities = 59/240 (24%), Positives = 95/240 (39%), Gaps = 42/240 (17%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQT--- 99
L ISL + PGE +A++G GSGK L+ +I R G+I+LDG ++ +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE-PDSGQILLDGHDLADYTLASLRR 406
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR--- 156
V+ L T+ + Y Q R A I + LA + +
Sbjct: 407 QVALVSQDVVLFND-TIANNIAYGR----TEQADR----AEIERALAAAYAQDFVDKLPL 457
Query: 157 --------NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
N L+ + +R+ I L+KD +L+LDE T LD S L+ + L +
Sbjct: 458 GLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ 517
Query: 209 RKSRAV----LLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE------YFRSIGF 258
++ V L T+EK DR + G ++ G +L ++ F
Sbjct: 518 GRTTLVIAHRLSTIEKA--------DRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQF 569
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 55.2 bits (133), Expect = 2e-08
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 22/178 (12%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT- 90
+ FG + +L ++ V GE +A++G GSGK +L ++ G+I ++G
Sbjct: 8 KRFGILT---VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE-PIDEGQIQVEGEQ 63
Query: 91 ---------PMSP------QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRY 135
P+ P + + G V +L P TV + A L +G ++R
Sbjct: 64 LYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLG--MARA 121
Query: 136 VRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
R ++L + L++ A ++L+ + +RV I L P ++L DE T LDP
Sbjct: 122 EAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDP 179
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 55.0 bits (133), Expect = 2e-08
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 11/162 (6%)
Query: 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMS 93
T ++L D+SL++ G + +++G G+GK LL ++SR + GEI +DG T
Sbjct: 11 YGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS-GEITIDGLELTSTP 69
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAH-LSIGPQVSRYVRNAR--IRQVLADLAL 150
+ + + LTV + + S G R + R I + + L L
Sbjct: 70 SKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQG----RLTKEDRRIINEAIEYLHL 125
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+++ R + EL+ + +R I L +D +LLDEP NLD
Sbjct: 126 EDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 54.5 bits (132), Expect = 2e-08
Identities = 53/192 (27%), Positives = 87/192 (45%), Gaps = 41/192 (21%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS-------- 93
+LKD+S + G+ +A++G GSGK +L ++ R + G I++DG +
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD-VSSGSILIDGQDIREVTLDSLR 74
Query: 94 ------PQ---LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV 144
PQ LF T GY N R P T E+ + AA + A+I
Sbjct: 75 RAIGVVPQDTVLFNDTIGY-NIRYGR-PDATDEE-VIEAA------------KAAQIHDK 119
Query: 145 LADLALSN-----VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
+ + + V R + +L+ E +RV I ++K+P +LLLDE T LD + I
Sbjct: 120 I--MRFPDGYDTIVGERGL-KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI 176
Query: 200 VSMLSSYAKRKS 211
+ L +K ++
Sbjct: 177 QAALRDVSKGRT 188
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays
the role of a scaffold protein for assembly of
iron-sulfur clusters and delivery to target proteins;
SufS is a cysteine desulfurase which mobilizes the
sulfur atom from cysteine and provides it to the
cluster; SufE has no associated function yet.
Length = 200
Score = 54.1 bits (131), Expect = 3e-08
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT-TRGEIILDG---TPMSPQ 95
ILK ++L ++ GEV A++G GSGK L + I T GEI+ G T + P+
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE 72
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 55.0 bits (132), Expect = 3e-08
Identities = 57/221 (25%), Positives = 95/221 (42%), Gaps = 27/221 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----SGTTRGEI------ILDGTPM 92
+ DIS+++ V A++G G GK L I+R + S + GEI ILD
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96
Query: 93 SPQLFQTTCGYVNHRTDLIPSL---TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA 149
L + G V + + P + L YA + + V + + + L A
Sbjct: 97 VVNL-RREIGMVFQKPNPFPKSIYNNITHALKYAG------ERRKSVLDEIVEESLTKAA 149
Query: 150 LSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
L + + + L+ + +R+ I L P +LLLDEP LDP+S I +++
Sbjct: 150 LWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITE 209
Query: 206 YAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
K + +++T ++ L DRTA+ GDL+ T
Sbjct: 210 L-KEEYSIIIVTHNMQQA--LRVSDRTAFFLNGDLVEYDQT 247
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 54.9 bits (132), Expect = 3e-08
Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 29/217 (13%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDGTPM-----S 93
LK+I+L++ EV A++G G GK ++ ++R S T G+I+ + S
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ +T G V + + P + Y GP++ +++ + + + +L
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTY-------GPKIHG-IKDKKTLDEIVEKSLRGA 151
Query: 154 A---------RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
A N L+ + +R+ I L +P ++L+DEPT LDP+ST + ++
Sbjct: 152 AIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQ 211
Query: 205 SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI 241
K+ +++T ++ + D+TA+ G +
Sbjct: 212 EL-KKDYSIIIVTHNMQQAARIS--DKTAFFLNGYVN 245
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 54.5 bits (131), Expect = 3e-08
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 12/165 (7%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
+G IQ L ++SL + GE++ ++G+ G+GK LL + T G I+ DG ++
Sbjct: 15 YGKIQA---LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT-SGRIVFDGKDIT 70
Query: 94 ----PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA 149
++ + V + +TVE+ L + Q R + ++ L
Sbjct: 71 DWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQE--RIKWVYELFPRLH 128
Query: 150 LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194
+ R ++ E + + IG L+ P LLLLDEP++ L P+
Sbjct: 129 ERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPI 171
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 56.1 bits (136), Expect = 4e-08
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 64/193 (33%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+L + L + E + ++G G+GK L+++++ GE++LD
Sbjct: 18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILN--------GEVLLDD------------ 57
Query: 102 GYVNHRTDLI-------PSLTVEQTLY---------YAAHLSIGPQVSRYV------RN- 138
G + + DLI P VE T+Y A +L +S V +N
Sbjct: 58 GRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNL 117
Query: 139 -------------------ARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDP 179
RI +VLA L L +S L+ R+ +G LV +P
Sbjct: 118 NELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNP 175
Query: 180 VLLLLDEPTVNLD 192
+LLLDEPT +LD
Sbjct: 176 DVLLLDEPTNHLD 188
Score = 37.6 bits (88), Expect = 0.021
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIILDGTPMSPQLFQ 98
++KD S +V+ G+ +A++G G GK LL+++ + SG GT + F
Sbjct: 334 LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-----GTKLEVAYFD 388
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLA---DLALS-NVA 154
HR +L P TV +L+ G Q + N R R VL D A
Sbjct: 389 ------QHRAELDPEKTVMD------NLAEGKQ--EVMVNGRPRHVLGYLQDFLFHPKRA 434
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
+ L+ E R+++ +K LL+LDEPT +LD + L+ +L SY
Sbjct: 435 MTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY 486
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 54.5 bits (131), Expect = 4e-08
Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 22/218 (10%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS---SGTT-RGEIILDGTPMSPQL-- 96
LK I+L + +V A++G G GK LL ++R + G G++ +DG + +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 97 --FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
+ G V + + P E Y I + V + + + L AL +
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIK---DKKVLDEVVERSLRGAALWDEV 135
Query: 155 RRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
+ + L+ + +R+ I + +P ++L+DEPT LDP++T+ I ++ K+
Sbjct: 136 KDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL-KKN 194
Query: 211 SRAVLLT--MEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
V++T M++ R DRTA+ +G+L+ T
Sbjct: 195 YTIVIVTHSMQQARR----ISDRTAFFLMGELVEHDDT 228
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 55.6 bits (135), Expect = 5e-08
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 25/164 (15%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---SPQLFQT 99
L ++SL +RPGE +A++G GSGK LL+++ T G ++LDG + P +
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ-PTEGSVLLDGVDIRQIDPADLRR 539
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN-- 157
GYV L T+ + A Y + I + ++ RR+
Sbjct: 540 NIGYVPQDPRLF-YGTLRDNIALGA---------PYADDEEILRAAELAGVTEFVRRHPD 589
Query: 158 -----ISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
I E L+ + + V + L++DP +LLLDEPT +D
Sbjct: 590 GLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD 633
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the
uptake of monosaccharides, such as pentoses (such as
xylose, arabinose, and ribose) and hexoses (such as
xylose, arabinose, and ribose), that cannot be broken
down to simple sugars by hydrolysis. Pentoses include
xylose, arabinose, and ribose. Important hexoses
include glucose, galactose, and fructose. In members of
the Carb_monos family, the single hydrophobic gene
product forms a homodimer while the ABC protein
represents a fusion of two nucleotide-binding domains.
However, it is assumed that two copies of the ABC
domains are present in the assembled transporter.
Length = 163
Score = 52.0 bits (126), Expect = 7e-08
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDGT 90
FG ++ L +SL VR GEV A+LG G+GK L++++ SG GEI++DG
Sbjct: 10 FGGVK---ALDGVSLSVRRGEVHALLGENGAGKSTLMKIL----SGLYKPDSGEILVDGK 62
Query: 91 PMSP 94
+S
Sbjct: 63 EVSF 66
Score = 32.4 bits (75), Expect = 0.28
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 154 ARRN----ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
ARR + +L+ E + V I L ++ LL+LDEPT L P
Sbjct: 72 ARRAGIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTP 115
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 53.7 bits (129), Expect = 8e-08
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 16/183 (8%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDGTPMSPQLFQT 99
L +I+ +AV+G G+GK L R +G T G +++ G P++ + +
Sbjct: 20 LNNINFIAPRNSRIAVIGPNGAGKSTLF----RHFNGILKPTSGSVLIRGEPITKENIRE 75
Query: 100 TCGYV----NHRTDLIPSLTVEQTLYYA-AHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
+V + D I S TVEQ + + +L + + + R+ L L L +
Sbjct: 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH----RVSSALHMLGLEELR 131
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
R L+ E +RV I + +P +L+LDEPT LDP ++ L+ + V
Sbjct: 132 DRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTV 191
Query: 215 LLT 217
+ +
Sbjct: 192 IFS 194
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 54.0 bits (131), Expect = 9e-08
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 30/178 (16%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISR--RSSGTTRGEIILDG---TPMSPQ-- 95
L ++SL + GE+ V+G+ G+GK L+ I+ R + G +++DG T +S +
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTS---GRVLVDGQDLTALSEKEL 77
Query: 96 ---------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLA 146
+FQ H +L+ S TV + L+ + AR+ ++L
Sbjct: 78 RKARRQIGMIFQ-------H-FNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLE 126
Query: 147 DLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
+ LS+ A R ++L+ + +RV I L +P +LL DE T LDP +T I+ +L
Sbjct: 127 LVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLK 184
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 54.7 bits (132), Expect = 1e-07
Identities = 52/226 (23%), Positives = 92/226 (40%), Gaps = 34/226 (15%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---SPQLFQ 98
L+ IS ++ GE LA++G GSGK L +I T G + LDG + + F
Sbjct: 333 TLRGISFSLQAGEALAIIGPSGSGKSTLARLIV-GIWPPTSGSVRLDGADLKQWDRETFG 391
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
GY+ +L P ++ ++R+ NA +++ L+ V +
Sbjct: 392 KHIGYLPQDVELFPG-------------TVAENIARFGENADPEKIIEAAKLAGVHELIL 438
Query: 159 --------------SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
+ L+ + +R+ + L DP L++LDEP NLD + + +
Sbjct: 439 RLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK 498
Query: 205 SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
+ R V++T R +L +D+ L G + G +L
Sbjct: 499 ALKARGITVVVITH---RPSLLGCVDKILVLQDGRIARFGERDEVL 541
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 53.3 bits (128), Expect = 1e-07
Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 17/219 (7%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPM 92
N TAL +D S V G + A++G GSGK L + + G R G+I + G P
Sbjct: 18 NGHTAL--RDASFTVPGGSIAALVGVNGSGKSTLFKALM----GFVRLASGKISILGQPT 71
Query: 93 SPQLFQTTCGYVNHRTDL---IPSLTVEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADL 148
L + YV ++ P L VE + + +G + ++ + LA +
Sbjct: 72 RQALQKNLVAYVPQSEEVDWSFPVL-VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARV 130
Query: 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
+ R I EL+ + +RV + + + ++LLDEP +D + I+S+L +
Sbjct: 131 DMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL-R 189
Query: 209 RKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+ + +L++ S V F D T + G ++ +GPT
Sbjct: 190 DEGKTMLVSTHNLGS-VTEFCDYTV-MVKGTVLASGPTE 226
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 53.6 bits (128), Expect = 1e-07
Identities = 54/230 (23%), Positives = 111/230 (48%), Gaps = 27/230 (11%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS---SGTT-RGEIILDGT--- 90
+T +L D++L+++ +V A +G G GK L +++ + GT+ GEI GT
Sbjct: 93 RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152
Query: 91 --PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVS----RYVRNARIRQV 144
+S +T G V + P+ E +++ +++ GP+ + R + + +
Sbjct: 153 SKKISSLELRTRIGMVFQK----PT-PFEMSIF--DNVAYGPRNNGINDRKILEKIVEKS 205
Query: 145 LADLALSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200
L AL + + ++ + L+ + +R+ I + +P +LL+DEPT LDP++T I
Sbjct: 206 LKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIE 265
Query: 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
++ K+K +++T ++ + D T + G + AG T+ +
Sbjct: 266 ELILEL-KKKYSIIIVTHSMAQAQRIS--DETVFFYQGWIEEAGETKTIF 312
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 54.3 bits (131), Expect = 1e-07
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 37/193 (19%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKR---ALLEVISRRSSGTTRGEIILDGTPMSPQLFQ 98
+LK ++ + PGEV+A++G GSGK ALL+ T G+++LDG P+ Q
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQ----NLYQPTGGQVLLDGVPLV----Q 547
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
Y+ HR + + E L+ S+ ++ + + +++A +N A I
Sbjct: 548 YDHHYL-HRQ--VALVGQEPVLFSG---SVRENIAYGLTDTPDEEIMAAAKAAN-AHDFI 600
Query: 159 SELTPSEH---------------RRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
E +R+ I LV+ P +L+LDE T LD L L
Sbjct: 601 MEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQL----L 656
Query: 204 SSYAKRKSRAVLL 216
R SR VLL
Sbjct: 657 QESRSRASRTVLL 669
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 54.2 bits (131), Expect = 1e-07
Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 25/181 (13%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---SP 94
+L+D+SLE+ PGE +A++G GSGK LL+++ G I+LDG +
Sbjct: 484 DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ-GRILLDGVDLNDIDL 542
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAA---HLSIGPQVSRY---VRNARIRQVLADL 148
+ GYV + L+ + ++++G + + A++ +
Sbjct: 543 ASLRRQVGYV----------LQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFI 592
Query: 149 -ALSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
L + E L+ + +R+ + L+ P +LLLDE T LDP + +I+ L
Sbjct: 593 ENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNL 652
Query: 204 S 204
Sbjct: 653 L 653
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 52.8 bits (126), Expect = 1e-07
Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 12/218 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT----RGEIILDGTPM----S 93
+L +S+ V +++G GSGK L ++R + + G+++L G +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLY-YAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
F+ G + R + P ++ L AH + + R V AR+ +V A+ +
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD 155
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
+ L+ + + + + L +P +LLLDEPT LDP +T I + S A R +
Sbjct: 156 RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLT- 214
Query: 213 AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
+++T ++ + DR A G L+ GPT +
Sbjct: 215 VIIVTHNLAQAARIS--DRAALFFDGRLVEEGPTEQLF 250
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 52.7 bits (127), Expect = 2e-07
Identities = 46/177 (25%), Positives = 71/177 (40%), Gaps = 37/177 (20%)
Query: 46 ISLEVRPGEVLAVLGSKGSGKRALLEVIS--RRSSGTTRGEIILDGTPMSPQLFQTTCGY 103
++LEVR E+++++G G+GK + ++ + +G G I+L G + G
Sbjct: 24 VNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTG---GTILLRGQHIE--------GL 72
Query: 104 VNH--------RT----DLIPSLTVEQTLYYAAHLSIG----------PQVSRYVRNA-- 139
H RT L +TV + L A H + P R A
Sbjct: 73 PGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALD 132
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196
R L + L A R L + RR+ I +V P +L+LDEP L+P T
Sbjct: 133 RAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKET 189
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 52.7 bits (127), Expect = 2e-07
Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 34/198 (17%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTR-GEIILDGTPMSPQL-- 96
L D+++ + G +A++G GSGK LL+ ++ + +SGT GE ++ + +L
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 97 --------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ---VSRYVRNARIRQVL 145
FQ + H+ E+T+ + GP VS + R+++
Sbjct: 83 LRKKVGIVFQ----FPEHQL-------FEETV--EKDICFGPMNFGVSEEDAKQKAREMI 129
Query: 146 ADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
+ L + R+ EL+ + RRV I L +P +L+LDEPT LDP ++ M
Sbjct: 130 ELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFY 189
Query: 205 SYAKRKSRAVLL---TME 219
K K +L +ME
Sbjct: 190 KLHKEKGLTTVLVTHSME 207
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 52.8 bits (127), Expect = 2e-07
Identities = 56/232 (24%), Positives = 95/232 (40%), Gaps = 42/232 (18%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----SGTTRGEIILDG-----TPMS 93
L D+ L++ V A +G G GK L ++R + G+I LDG +
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN-ARIRQV----LADL 148
+ G V + + P E Y GP++ R+ A + ++ L
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAY-------GPRIHGLARSKAELDEIVETSLRKA 147
Query: 149 ALSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY----LIV 200
L + + E L+ + +R+ I + P ++L+DEP LDP++T LI
Sbjct: 148 GLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207
Query: 201 SMLSSYAKRKSRAVLLT--MEK-PRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249
+ +Y V++T M++ R RTA+ LG+L+ G T M
Sbjct: 208 ELRQNYT-----IVIVTHSMQQAARVS-----QRTAFFHLGNLVEVGDTEKM 249
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 54.2 bits (130), Expect = 2e-07
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 20/202 (9%)
Query: 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQL--FQTTCGYVNHR 107
VRPGE +LG G+GK ++++ ++ T G+ + G + + GY
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTT-VTSGDATVAGKSILTNISDVHQNMGYCPQF 2020
Query: 108 TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV----LADLALSNVARRNISELTP 163
+ LT + LY A L R V I +V + L LS A R +
Sbjct: 2021 DAIDDLLTGREHLYLYARL-------RGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSG 2073
Query: 164 SEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT---MEK 220
R++ L+ P L+LLDEPT +DP + ++ + + S R+ RAV+LT ME+
Sbjct: 2074 GNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII-REGRAVVLTSHSMEE 2132
Query: 221 PRS--DVLPFLDRTAYLCLGDL 240
+ L + + A+ CLG +
Sbjct: 2133 CEALCTRLAIMVKGAFQCLGTI 2154
Score = 48.5 bits (115), Expect = 1e-05
Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 16/210 (7%)
Query: 54 EVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQL--FQTTCGYVNHRTDLI 111
++ A LG G+GK L +++ T+ G +++ G + L + + G L
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPPTS-GTVLVGGKDIETNLDAVRQSLGMCPQHNILF 1015
Query: 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ--VLADLALSNVARRNISELTPSEHRRV 169
LTV + + + A L R A++ +L D L + +L+ R++
Sbjct: 1016 HHLTVAEHILFYAQLK-----GRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKL 1070
Query: 170 VIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL-TMEKPRSDVLPF 228
+ V D +++LDEPT +DP S I +L Y R R +++ T +D+L
Sbjct: 1071 SVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY--RSGRTIIMSTHHMDEADLLG- 1127
Query: 229 LDRTAYLCLGDLIYAGPTRLMLEYFRSIGF 258
DR A + G L Y T L L+ GF
Sbjct: 1128 -DRIAIISQGRL-YCSGTPLFLKNCFGTGF 1155
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 53.5 bits (129), Expect = 2e-07
Identities = 56/205 (27%), Positives = 79/205 (38%), Gaps = 36/205 (17%)
Query: 18 LQHPALVETGSCFQRVFGNIQ--TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS- 74
AL G + IL ++S +V PGE ++G G+GK LL +I+
Sbjct: 249 SARHALPANEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
Query: 75 ---------------RRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHR--TDLIPSLTVE 117
RR SG T +I + GYV+ D S +V
Sbjct: 309 DHPQGYSNDLTLFGRRRGSGETIWDI------------KKHIGYVSSSLHLDYRVSTSVR 356
Query: 118 QTLYYAAHLSIG--PQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQ 174
+ SIG VS + +Q L L + A L+ + R +I
Sbjct: 357 NVILSGFFDSIGIYQAVSDRQQ-KLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA 415
Query: 175 LVKDPVLLLLDEPTVNLDPLSTYLI 199
LVK P LL+LDEP LDPL+ L+
Sbjct: 416 LVKHPTLLILDEPLQGLDPLNRQLV 440
Score = 41.9 bits (99), Expect = 8e-04
Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 37/221 (16%)
Query: 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQL---FQTTC-- 101
SL + G+ A +G+ GSGK AL ++ GE+ L +S + F
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALA--------GELPL----LSGERQSQFSHITRL 70
Query: 102 -----------GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
+ + TD++ S + T A + I +V AR Q+ +
Sbjct: 71 SFEQLQKLVSDEWQRNNTDML-SPGEDDTGRTTAEI-IQDEVKD---PARCEQLAQQFGI 125
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
+ + R L+ E R+ ++ L+ +P LL+LDEP LD S + +L+S +
Sbjct: 126 TALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSG 185
Query: 211 SRAVLLTMEKPRSDVLP-FLDRTAYLCLGDLIYAGPTRLML 250
VL+ R D +P F+ L L G +L
Sbjct: 186 ITLVLVL---NRFDEIPDFVQFAGVLADCTLAETGEREEIL 223
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 53.5 bits (129), Expect = 2e-07
Identities = 51/216 (23%), Positives = 80/216 (37%), Gaps = 35/216 (16%)
Query: 9 EEEYYLKIDLQHPALVETGSCFQR----VFGNIQTALILKDISLEVRPGEVLAVLGSKGS 64
+ E + P L F IL IS + G+ +A++G G+
Sbjct: 241 DVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGA 300
Query: 65 GKRALLEVISRRSSGTTRGEIILDGT--------------PMSPQ---LFQTTCGYVNHR 107
GK +L ++ R + G I +DG + PQ LF T Y
Sbjct: 301 GKSTILRLLFRFYDVNS-GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKY 359
Query: 108 TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHR 167
P T E+ A I + Q L + + V R + +L+ E +
Sbjct: 360 GR--PDATAEEVGAAAEAAQIHDFI----------QSLPEGYDTGVGERGL-KLSGGEKQ 406
Query: 168 RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
RV I ++K+P +L+LDE T LD + I + L
Sbjct: 407 RVAIARTILKNPPILILDEATSALDTHTEQAIQAAL 442
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 51.4 bits (123), Expect = 2e-07
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 12/157 (7%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVIS--RRSSGTTRGEIILDGTPMSPQLFQTT 100
L+ ++ +RPGE+ + G G+GK LL++I R S G+I G ++ +L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSA---GKIWFSGHDIT-RLKNRE 73
Query: 101 CGYVNHRTDLI---PSLTVEQTLY--YAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
++ + +I L +++T+Y A L I +R R+ L + L + A+
Sbjct: 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRR-RVSAALDKVGLLDKAK 132
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+L+ E +RV I +V P +LL DEPT NLD
Sbjct: 133 NFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 51.5 bits (124), Expect = 4e-07
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 36/172 (20%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRR---SSGT----TRGEIILDGTPMSPQ-- 95
D+S ++ PGEVL ++G GSGK LL +S R +G R + D +S
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83
Query: 96 --LFQTTCGYV--NHRTDLIPSLT----VEQTLYYAAHLSIGPQVSRYVRN-ARIRQVLA 146
L +T G+V + R L ++ + + L +++G R+ IR
Sbjct: 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERL-----MAVG------ARHYGDIRATAG 132
Query: 147 D-LALSNVARRNISELTPSE-----HRRVVIGTQLVKDPVLLLLDEPTVNLD 192
D L + I +L P+ +R+ I LV P L+ +DEPT LD
Sbjct: 133 DWLERVEIDAARIDDL-PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 52.4 bits (126), Expect = 4e-07
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 32/169 (18%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLFQ 98
+LK I + GEV A+LG G+GK L+++I+ + G + + G P ++P
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS-GTLEIGGNPCARLTPAKAH 84
Query: 99 TTCGY-VNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL--------- 148
Y V L P+L+V++ + + L + +++Q+LA L
Sbjct: 85 QLGIYLVPQEPLLFPNLSVKENILFG--LPKRQASMQ-----KMKQLLAALGCQLDLDSS 137
Query: 149 -ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196
VA R I E I L++D +L+LDEPT +L P T
Sbjct: 138 AGSLEVADRQIVE----------ILRGLMRDSRILILDEPTASLTPAET 176
Score = 40.8 bits (96), Expect = 0.002
Identities = 46/178 (25%), Positives = 70/178 (39%), Gaps = 51/178 (28%)
Query: 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVIS--RRSSGTTRGEIILDG---TPMSPQ--- 95
++ISLEVR GE+L + G G+G+ L E + R + G G I+L+G +S
Sbjct: 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG---GRIMLNGKEINALSTAQRL 336
Query: 96 ---------------------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSR 134
L C ++R + + A L R
Sbjct: 337 ARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNR----RGFWI-KPARENAVL------ER 385
Query: 135 YVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
Y R I+ A+ A AR L+ ++V+I L P LL++DEPT +D
Sbjct: 386 YRRALNIKFNHAEQA----ART----LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 49.0 bits (118), Expect = 5e-07
Identities = 41/177 (23%), Positives = 61/177 (34%), Gaps = 67/177 (37%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTT 100
L+LKDISL + PG+ + ++G G+GK LL++I+ G + T
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE-GIVTWGST---------- 62
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE 160
+ Y LS G
Sbjct: 63 -----------------VKIGYFEQLSGG------------------------------- 74
Query: 161 LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
E R+ + L+++P LLLLDEPT +LD S + L Y V+L
Sbjct: 75 ----EKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILV 123
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 51.1 bits (123), Expect = 5e-07
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 2 VEITITGEEEYYLKIDLQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGS 61
+ I E+ Y LK L+ + + LKDIS E+ GE + ++G
Sbjct: 11 KKFRIYHEKSYSLKKRLKG---------LAKGGRKVAEFWALKDISFEIYKGERVGIIGH 61
Query: 62 KGSGKRALLEVISRRSSGT---TRGEIILDGTPMSP 94
G+GK LL++I +G T G++ + G
Sbjct: 62 NGAGKSTLLKLI----AGIYKPTSGKVKVTGKVAPL 93
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 51.3 bits (123), Expect = 5e-07
Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 31/201 (15%)
Query: 19 QHPALVET-GSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS 77
LV+ G F R GN I +ISL V G++ A++G G GK LL +I +
Sbjct: 3 SVANLVDMRGVSFTR--GN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI 57
Query: 78 SGTTRGEIILDGTPMSPQLFQTTCGYVNHRTD-------LIPSLTVEQTLYYA--AHLSI 128
+ GEI+ DG + P + ++ V R L + V + Y H +
Sbjct: 58 A-PDHGEILFDGENI-PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQL 115
Query: 129 GPQVSRYVRNARIRQVLADLALSNVARRNISELTPSE-----HRRVVIGTQLVKDPVLLL 183
+ V+ + L V R ++L PSE RR + + +P L++
Sbjct: 116 PAPLLHST-------VM--MKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIM 166
Query: 184 LDEPTVNLDPLSTYLIVSMLS 204
DEP V DP++ ++V ++S
Sbjct: 167 FDEPFVGQDPITMGVLVKLIS 187
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 51.0 bits (122), Expect = 5e-07
Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 15/189 (7%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ 95
++ + L +S EVR GE+L ++G G+GK LL ++ +SG+ G I G P+
Sbjct: 8 DVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS--GSIQFAGQPLEA- 64
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
+ HR L T + +L++ R + V LAL +
Sbjct: 65 --WSATELARHRAYLSQQQTPPFAMPVWHYLTL--HQPDKTRTELLNDVAGALALDDKLG 120
Query: 156 RNISELTPSEHRRV-------VIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
R+ ++L+ E +RV I LLLLDEP +LD + +LS+
Sbjct: 121 RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC- 179
Query: 209 RKSRAVLLT 217
++ A++++
Sbjct: 180 QQGLAIVMS 188
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 52.0 bits (125), Expect = 5e-07
Identities = 53/210 (25%), Positives = 99/210 (47%), Gaps = 34/210 (16%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEV---ISRRSSGTTRGEIILDGTPMSPQLFQT 99
++D+S ++ GE+L + G G+ + ++E I +S+GT I L G ++
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGT----ITLHGKKINNH---N 316
Query: 100 TCGYVNHRTDLIPSLTVE--QTLYYAAHLSIG-----PQVSRY------VRNARIRQ--- 143
+NH L+ T E T YA +L IG + Y + N+R++
Sbjct: 317 ANEAINHGFALV---TEERRSTGIYA-YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQ 372
Query: 144 -VLADLALSNVARR-NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201
V+ + + R I L+ ++V+IG L+ P +L+LDEPT +D + + I
Sbjct: 373 WVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQ 432
Query: 202 MLSSYAKRKSRAVLLTMEKPRSDVLPFLDR 231
+++ AK+ ++++ E P ++L DR
Sbjct: 433 LIAELAKKDKGIIIISSEMP--ELLGITDR 460
Score = 37.4 bits (87), Expect = 0.019
Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 11/156 (7%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEV---ISRRSSGTTRGEIILDGTPM----SPQ 95
L +++L+VRP + A++G G+GK LL+ I ++ S G I+ G + S +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDS----GSILFQGKEIDFKSSKE 69
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
+ V+ +L+ +V ++ + + G V + + + +L + R
Sbjct: 70 ALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPR 129
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191
++ L+ S+ + + I + ++++DEPT +L
Sbjct: 130 AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL 165
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 52.2 bits (125), Expect = 5e-07
Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 21/197 (10%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+L++++LE++PG+V+AV+G G+GK LL +I G RGE ++
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKG--RGEEKYRPDSGKVEV----- 450
Query: 102 GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIR-QVLADLALSNVA--RRNI 158
N + LIP E ++I + + ++L LS+ RR
Sbjct: 451 -PKNTVSALIPG-EYEPEF---GEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKF 505
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTM 218
SEL+ + R + L + P +LL+DE +LD L+ + +S A+ +++
Sbjct: 506 SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVT 565
Query: 219 EKP------RSDVLPFL 229
+P R D L +
Sbjct: 566 HRPEVGNALRPDTLILV 582
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 51.4 bits (124), Expect = 7e-07
Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 32/171 (18%)
Query: 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDG-- 89
G Q ++K I L+V GE + ++G G GK LL +++ G T GEI + G
Sbjct: 15 GKTQ---VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVA----GLERITSGEIWIGGRV 67
Query: 90 -TPMSPQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSI-GPQVSRYVRNARI 141
+ P +FQ Y L P ++V + + Y L I G + + R+
Sbjct: 68 VNELEPADRDIAMVFQN---YA-----LYPHMSVRENMAYG--LKIRG--MPKAEIEERV 115
Query: 142 RQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ L L + R EL+ + +RV +G +V++P + L DEP NLD
Sbjct: 116 AEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 50.8 bits (122), Expect = 7e-07
Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 36/196 (18%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSP 94
LK++S E+ GE +A+LG GSGK IS+ +G GEI +DG +S
Sbjct: 20 SENNALKNVSFEINEGEYVAILGHNGSGK----STISKILTGLLKPQSGEIKIDGITISK 75
Query: 95 Q-----------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ 143
+ +FQ N I + TVE ++ G + + +++
Sbjct: 76 ENLKEIRKKIGIIFQ------NPDNQFIGA-TVE------DDIAFGLENKKVPPK-KMKD 121
Query: 144 VLADLA----LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
++ DLA + + + L+ + +RV I + L +P +++ DE T LDP I
Sbjct: 122 IIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREI 181
Query: 200 VSMLSSYAKRKSRAVL 215
++ K + + ++
Sbjct: 182 KKIMVDLRKTRKKTLI 197
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 50.9 bits (122), Expect = 8e-07
Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 28/221 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
+ D++ E G+ A++G GSGK L++ I+ TT G + +D ++ +
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT-GTVTVDDITITHKTKDKYIR 81
Query: 103 YVNHRTDLIPSL--------TVEQTLYYAAHLSIGPQ-VSRYVRNARIR--QVLADLALS 151
V R ++ TVE+ + + GP+ + + ++L DL S
Sbjct: 82 PVRKRIGMVFQFPESQLFEDTVEREIIF------GPKNFKMNLDEVKNYAHRLLMDLGFS 135
Query: 152 NVARRNISELTP-----SEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
R++ +P + R++ I + L +P +++LDEPT LDP S ++ +L S
Sbjct: 136 ----RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL 191
Query: 207 AKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+++ ++L ++V + D + G ++ +
Sbjct: 192 QTDENKTIILVSHD-MNEVARYADEVIVMKEGSIVSQTSPK 231
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and
a cytoplasmic membrane protein MPA2.
Length = 224
Score = 49.8 bits (120), Expect = 9e-07
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP 94
LKD+S EV GE + ++G G+GK LL +++ G + + G S
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP-PDSGTVTVRGRVSSL 88
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 49.5 bits (119), Expect = 1e-06
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 7/157 (4%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLFQ 98
+LKDI+ ++PGE +A++G G+GK L+ ++ R +G+I++DG +S + +
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLM-RFYDPQKGQILIDGIDIRDISRKSLR 76
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA--LSNVARR 156
+ G V T L T+ + + + +V + A + L V
Sbjct: 77 SMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGE 135
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
N L+ E + + I +++DP +L+LDE T N+D
Sbjct: 136 NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDT 172
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 50.1 bits (120), Expect = 1e-06
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 42/177 (23%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---T 90
FG+ ++ +++L ++ G ++ +LG G GK +L +++ T G+I +DG T
Sbjct: 16 FGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK-PTEGQIFIDGEDVT 71
Query: 91 PMSPQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV---------SRY 135
S Q +FQ+ Y L P H+S+G V +
Sbjct: 72 HRSIQQRDICMVFQS---YA-----LFP------------HMSLGENVGYGLKMLGVPKE 111
Query: 136 VRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R R+++ L + L+ R + +++ + +RV + L+ P +LL DEP NLD
Sbjct: 112 ERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLD 168
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 49.1 bits (117), Expect = 2e-06
Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 22/166 (13%)
Query: 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRR---SSGT----TRGEIILDGTPMSP-- 94
+D+S ++ PGEVL ++G GSGK LL ++ R GT R L+ +S
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 95 --QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLAD-LALS 151
+L +T G+V+ P + + A++ IR D L
Sbjct: 80 RRRLMRTEWGFVHQN----PRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEV 135
Query: 152 NVARRNISELTPSE-----HRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ I +L P +R+ I LV P L+ +DEPT LD
Sbjct: 136 EIDPTRIDDL-PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD 180
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 49.2 bits (117), Expect = 2e-06
Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 26/221 (11%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----SGTTRGEIILDG-----TPMS 93
LK++S+++ V A++G G GK + ++R + + G++ ++G +
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV---SRYVRNARIRQVLADLAL 150
+ G V + + P + Y GP++ ++ + + L AL
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAY-------GPRIHGANKKDLDGVVENALRSAAL 140
Query: 151 ----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
S+ + L+ + +R+ I L P ++L DEPT LDP+ST I ++ +
Sbjct: 141 WDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL 200
Query: 207 AKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
K+ V++T ++ + D T + +G+LI G TR
Sbjct: 201 -KKDYTIVIVTHNMQQAARIS--DYTGFFLMGELIEFGQTR 238
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 49.5 bits (119), Expect = 2e-06
Identities = 52/170 (30%), Positives = 74/170 (43%), Gaps = 39/170 (22%)
Query: 43 LKDISLEVR---PGE-VLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMSPQ 95
L D+ L V P + + A+ G G+GK +L+ IS G TR G I+L+G
Sbjct: 10 LGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAIS----GLTRPQKGRIVLNGR----V 61
Query: 96 LF---QTTC--------GYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIR 142
LF + C GYV + R L P V L Y A+
Sbjct: 62 LFDAEKGICLPPEKRRIGYVFQDAR--LFPHYKVRGNLRYGM---------AKSMVAQFD 110
Query: 143 QVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+++A L + + R L+ E +RV IG L+ P LLL+DEP +LD
Sbjct: 111 KIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 49.0 bits (117), Expect = 3e-06
Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 34/172 (19%)
Query: 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRR---SSGT----TRGEIILDGTPMSP-- 94
+D+S ++ PGEVL ++G GSGK LL+ IS R +GT R D MS
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 95 --QLFQTTCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQV----SRYVRNAR------ 140
+L +T G+V N R L ++ A +IG ++ +R+ N R
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQVS--------AGGNIGERLMAIGARHYGNIRAEAQDW 134
Query: 141 IRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ +V DL + R S +R+ I LV P L+ +DEPT LD
Sbjct: 135 LEEVEIDLDRIDDLPRTFSG---GMQQRLQIARNLVTRPRLVFMDEPTGGLD 183
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 49.7 bits (119), Expect = 4e-06
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 9/176 (5%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLF 97
+LKDIS + PGE +A++G GSGK L++++ R T GEI++DG +S
Sbjct: 343 PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD-PTSGEILIDGIDIRDISLDSL 401
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL---SNVA 154
+ G V+ L S T+ + + + ++ ++ A + +A+L + V
Sbjct: 402 RKRIGIVSQDPLLF-SGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVG 460
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
R ++ L+ + +R+ I L+++P +L+LDE T LD + LI L K +
Sbjct: 461 ERGVN-LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGR 515
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 48.5 bits (116), Expect = 4e-06
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSPQL- 96
L L D++LEV+ GE L +LG GSGK I++ + + G++ +DG S +
Sbjct: 24 LALDDVNLEVKKGEFLVILGRNGSGK----STIAKHMNALLIPSEGKVYVDGLDTSDEEN 79
Query: 97 ---FQTTCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
+ G V N ++ ++ E + +L I P+ R R+ + L + +
Sbjct: 80 LWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIR----ERVDESLKKVGMY 135
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
R L+ + +RV I L P ++ DEPT LDP
Sbjct: 136 EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP 177
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 48.0 bits (114), Expect = 5e-06
Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 19/218 (8%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDGT-----PM 92
ILK+++L++ V A++G G GK + ++R G I LDG +
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 93 SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
+ G V + + P + Y L I + R+ + L AL +
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAY---GLRIHGEDDEDFIEERVEESLKAAALWD 134
Query: 153 VARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
+ + + L+ + +R+ I + P ++L+DEP LDP+ST I ++ K
Sbjct: 135 EVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL-K 193
Query: 209 RKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
V++T ++ + T++ G++I +G T
Sbjct: 194 EDYTIVIVTHNMQQATRVS--KYTSFFLNGEIIESGLT 229
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 47.5 bits (113), Expect = 9e-06
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 25/188 (13%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG------TTRGEIILDGTPMSPQ 95
L DIS + G A++G GSGK IS+ +G +I +DG
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGK----STISKLINGLLLPDDNPNSKITVDGI----T 73
Query: 96 LFQTTCGYVNHRTDLI---PS-----LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLAD 147
L T + + ++ P TV + + V R +R VLAD
Sbjct: 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLE---NRAVPRPEMIKIVRDVLAD 130
Query: 148 LALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYA 207
+ + + + L+ + +RV I L +P +++LDE T LDP I+ ++
Sbjct: 131 VGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLK 190
Query: 208 KRKSRAVL 215
K+ + V+
Sbjct: 191 KKNNLTVI 198
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 46.7 bits (112), Expect = 9e-06
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVI 73
G +T+ LKDI+LEV GE++A++G GSGK +LL +
Sbjct: 13 GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSAL 51
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 48.4 bits (116), Expect = 9e-06
Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 49/187 (26%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEV---ISRRSSGTTRGEIILDGTPMSPQLFQ 98
ILKDISL PG + VLG G+GK LL + + + +G R +P +
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEAR---------PAPGI-- 68
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRY------------------VRNAR 140
GY+ L P+ TV + + I + R+ A
Sbjct: 69 -KVGYLPQEPQLDPTKTVRENVEEGVA-EIKDALDRFNEISAKFAEPDADMDALLAEQAE 126
Query: 141 IRQVLADLALSNVARR---------------NISELTPSEHRRVVIGTQLVKDPVLLLLD 185
+++++ ++ R+ ++++L+ E RRV + L+ P +LLLD
Sbjct: 127 LQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLD 186
Query: 186 EPTVNLD 192
EPT +LD
Sbjct: 187 EPTNHLD 193
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 47.3 bits (112), Expect = 1e-05
Identities = 39/177 (22%), Positives = 77/177 (43%), Gaps = 13/177 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+ +++++E+ G A++G G GK LL +SR + G + LDG +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-PAHGHVWLDGE----HIQHYAS 76
Query: 102 GYVNHRTDLI------PSLTVEQTLYYAAHLSIGPQVSRYVRN--ARIRQVLADLALSNV 153
V R L+ P Q L P +R+ + + + + ++++
Sbjct: 77 KEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL 136
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
A +++ L+ + +R I L ++ ++LLDEPT LD ++ +LS + K
Sbjct: 137 ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREK 193
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 48.0 bits (115), Expect = 1e-05
Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 41/177 (23%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPM- 92
Q ILK IS ++ GE L ++G GSGK R L+ + T G + LDG +
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP-----PTSGSVRLDGADLR 401
Query: 93 --SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLA---- 146
+ GY+ +L +I ++R+ A +V+
Sbjct: 402 QWDREQLGRHIGYLPQDVELFDG-------------TIAENIARFGEEADPEKVIEAARL 448
Query: 147 ----DLAL-------SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+L L + + + L+ + +R+ + L DP L++LDEP NLD
Sbjct: 449 AGVHELILRLPQGYDTRIGEGGAT-LSGGQRQRIALARALYGDPFLVVLDEPNSNLD 504
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 46.6 bits (110), Expect = 2e-05
Identities = 41/181 (22%), Positives = 81/181 (44%), Gaps = 20/181 (11%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIILDGTPMSPQLFQ 98
L +I++++ + A++G G GK L ++R + G +I +G + F
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNAR-----IRQVLADLALSNV 153
+ + ++ + ++S GP++ ++ + + Q L AL N
Sbjct: 83 IL--ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHG-TKDKKKLDEIVEQSLKKSALWNE 139
Query: 154 AR----RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST----YLIVSMLSS 205
+ N L+ + +R+ I L +P ++L+DEPT LDP+ST LI+++ S
Sbjct: 140 VKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKES 199
Query: 206 Y 206
Y
Sbjct: 200 Y 200
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 46.6 bits (111), Expect = 2e-05
Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 36/174 (20%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKR-------ALLEVISRRSSGTTRGEIILDGT 90
Q L D+S V+ GE L+++G GSGK LLE S G+II+DG
Sbjct: 18 QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES--------GQIIIDGD 69
Query: 91 PMSPQ-----------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNA 139
++ + +FQ N + + TVE + + +
Sbjct: 70 LLTEENVWDIRHKIGMVFQ------NPDNQFVGA-TVEDDVAFGLE---NKGIPHEEMKE 119
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
R+ + L + + + R + L+ + +RV I + P +++LDE T LDP
Sbjct: 120 RVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 46.6 bits (110), Expect = 2e-05
Identities = 40/191 (20%), Positives = 85/191 (44%), Gaps = 16/191 (8%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT-------- 90
T IL+ +S+E+ +V A++G G GK L+ ++R + E+ ++G
Sbjct: 19 TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE--LESEVRVEGRVEFFNQNI 76
Query: 91 ---PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVS--RYVRNARIRQVL 145
++ + V+ + +L P + Y + P++ V +A L
Sbjct: 77 YERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADL 136
Query: 146 ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
D + + ++ +L+ + +R+ I L P +LL+DEP LDP+++ + S++ S
Sbjct: 137 WD-EIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQS 195
Query: 206 YAKRKSRAVLL 216
R +++
Sbjct: 196 LRLRSELTMVI 206
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 47.3 bits (113), Expect = 2e-05
Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 24/155 (15%)
Query: 43 LKDISLEVRPG-----EVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLF 97
D LEV G EV+ +LG G GK +++++ E L PQ
Sbjct: 352 YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLK-VSYKPQ-- 408
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
Y++ D TVE L A + G S Y + +++ L L ++ R
Sbjct: 409 -----YISPDYDG----TVEDLLRSAIRSAFG---SSYFKT----EIVKPLNLEDLLERP 452
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ EL+ E +RV I L ++ L LLDEP+ LD
Sbjct: 453 VDELSGGELQRVAIAAALSREADLYLLDEPSAYLD 487
Score = 40.7 bits (96), Expect = 0.002
Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 52/172 (30%)
Query: 50 VRPGEVLAVLGSKGSGKRALLEVIS--------------------RRSSGTTRGEI---I 86
RPG+V+ +LG G GK L++++ +R GT +
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL 156
Query: 87 LDG---TPMSPQLFQTTCGYVNHRTDLIPSL---TVEQTLYYAAHLSIGPQVSRYVRNAR 140
+G PQ YV DLIP + V + L + +
Sbjct: 157 YEGELRAVHKPQ-------YV----DLIPKVVKGKVGELL------------KKVDERGK 193
Query: 141 IRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+V+ L L NV R++SEL+ E +RV I L++D + DEP+ LD
Sbjct: 194 FDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD 245
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 46.3 bits (110), Expect = 2e-05
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----SGTTRGEIILDGT-----PMS 93
L D+S+++ +V A++G G GK L I+R + + GE+ G +
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN--ARIRQVLADLALS 151
P + G V + + P + Y G ++ Y + R+ + L AL
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAY-------GLKIQGYDGDIDERVEESLRRAALW 167
Query: 152 NVARRNIS----ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196
+ + + +L+ + +R+ I + DP ++L+DEP LDP++T
Sbjct: 168 DEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVAT 216
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 47.0 bits (112), Expect = 2e-05
Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 35/186 (18%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQ 95
+ +L +++L+++PGE + ++G GSGK L +++ R + G++++DG ++ P
Sbjct: 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT-PQHGQVLVDGVDLAIADPA 527
Query: 96 LFQTTCGYVNHRTDLI------------PSLTVEQTLYYA----AHLSIGPQVSRYVRNA 139
+ G V L P E ++ A AH I Y
Sbjct: 528 WLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEV 587
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
+ L+ + +R+ I LV +P +L+ DE T LD S LI
Sbjct: 588 GEKGAN---------------LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALI 632
Query: 200 VSMLSS 205
+ +
Sbjct: 633 MRNMRE 638
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 45.6 bits (109), Expect = 2e-05
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
+LK+IS ++PGE + ++G GSGK +LL + R + G I++DG +S
Sbjct: 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-LSSGSILIDGVDIS 69
Score = 30.2 bits (69), Expect = 2.5
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 175 LVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
L++ +L+LDE T ++DP + LI + K VL
Sbjct: 154 LLRKSKILVLDEATASVDPETDALIQKTIRE--AFKDCTVL 192
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 46.7 bits (112), Expect = 2e-05
Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 38/162 (23%)
Query: 43 LKDISLEV-----RPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPMS 93
L D SLEV GEV+ ++G G GK + L V+ GE+ + +S
Sbjct: 350 LGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-----PDEGEVDPELK-IS 403
Query: 94 --PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV-SRYVRNARIRQVLADLAL 150
PQ Y+ + D TVE L SI + S Y ++ +++ L L
Sbjct: 404 YKPQ-------YI--KPD--YDGTVEDLLR-----SITDDLGSSYYKS----EIIKPLQL 443
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ +N+ +L+ E +RV I L +D L LLDEP+ +LD
Sbjct: 444 ERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
Score = 39.0 bits (92), Expect = 0.007
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
++ +V+ L L N+ R+ISEL+ E +RV I L++D DEPT LD
Sbjct: 192 KLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 45.5 bits (108), Expect = 3e-05
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 26/157 (16%)
Query: 43 LKDISLEVRPG-----EVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS--PQ 95
L + +LEV G EV+ +LG G GK +++++ G+I ++ +S PQ
Sbjct: 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK-PDEGDIEIELDTVSYKPQ 68
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
Y+ + TV L SI Y ++ L + +
Sbjct: 69 -------YIKADYEG----TVRDLLS-----SITKDF--YTHPYFKTEIAKPLQIEQILD 110
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R + EL+ E +RV I L KD + LLDEP+ LD
Sbjct: 111 REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 45.8 bits (109), Expect = 3e-05
Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 28/170 (16%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSP 94
LKD+S V GE +A++G GSGK L +++ +G G I + G +S
Sbjct: 18 AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLL----NGLLLPEAGTITVGGMVLSE 73
Query: 95 Q-----------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ 143
+ +FQ N + + TV+ + + +IG V R R+ Q
Sbjct: 74 ETVWDVRRQVGMVFQ------NPDNQFVGA-TVQDDVAFGLE-NIG--VPREEMVERVDQ 123
Query: 144 VLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
L + + + R L+ + +RV I L P +++LDE T LDP
Sbjct: 124 ALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 46.4 bits (110), Expect = 4e-05
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 37/179 (20%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
F ++ + D+S E + G+ +A++G G+GK L+ ++ +R T G+I++DG ++
Sbjct: 342 FEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLL-QRVYDPTVGQILIDGIDIN 400
Query: 94 -----------PQLFQTTCGYVNH---------RTDLIPSLTVEQTLYYAAHLSIGPQVS 133
+FQ G N R E AAH I + +
Sbjct: 401 TVTRESLRKSIATVFQDA-GLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSN 459
Query: 134 RYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
Y + V R + L+ E +R+ I ++K+ +L+LDE T LD
Sbjct: 460 GY--------------DTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALD 503
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 45.0 bits (106), Expect = 5e-05
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 11/159 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRAL---LEVISRRSSGTTRGEIILDGTPMSPQLFQT 99
L++I+L ++ GE + ++G GSGK L L + R G I G Q +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 100 TCGYV--NHRTDLIPSLTVEQTLYYAA-HLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
G V N T + TVE+ L + +L + P R R+ + LA++ L R
Sbjct: 78 LVGIVFQNPETQFV-GRTVEEDLAFGPENLCLPPIEIR----KRVDRALAEIGLEKYRHR 132
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
+ L+ + + V + L +P L+ DE T LDP S
Sbjct: 133 SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 45.2 bits (107), Expect = 5e-05
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 160 ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTME 219
ELT E ++V+I L P LL+ DEPT +++P + I +LS + + +LL
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217
Query: 220 KPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
+ + + D+ L G + + P+ ++
Sbjct: 218 DLQM-ISQWADKINVLYCGQTVESAPSEELVT 248
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 44.4 bits (105), Expect = 9e-05
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 15/185 (8%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLE---VISRRSSGTTRGEIILDGTPMSPQLFQT 99
L +IS E+ G +A++G GSGK L++ + + SSGT I + G ++P+
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGT----ITIAGYHITPETGNK 78
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLS---IGPQ---VSRYVRNARIRQVLADLALS-N 152
+ + L+ E L+ L GP+ S + + L + LS +
Sbjct: 79 NLKKLRKKVSLVFQFP-EAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSED 137
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
+ ++ EL+ + RRV I + +P +L LDEP LDP ++ + Y K
Sbjct: 138 LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHT 197
Query: 213 AVLLT 217
+L+T
Sbjct: 198 VILVT 202
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 44.1 bits (104), Expect = 9e-05
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 30/186 (16%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----SGTTRGEIILDGTPMSPQ--- 95
+K ++ ++ V A++G G GK L I+R + S T G ++ DG + +
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114
Query: 96 --LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGP---------QVSRYVRNARIRQV 144
L + G V + + P + Y GP Q+ V + +
Sbjct: 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAY-------GPRLHGINDKKQLEEIVEKSLRKAA 167
Query: 145 LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY----LIV 200
L D +S+ +N L+ + +R+ + L +P +LLLDEPT LDP +T LI
Sbjct: 168 LWD-EVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQ 226
Query: 201 SMLSSY 206
+ SY
Sbjct: 227 ELRGSY 232
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 44.6 bits (106), Expect = 1e-04
Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 22/159 (13%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEV---ISRRSSGTTR---GEIILDGTPMSPQL 96
L +L V PG V+A++G G+GK +++V I R +G+ E+ +G P S Q
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG-PKSSQ- 77
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ-VSRYVR------NARIRQVLADLA 149
+ G ++ +LIP LT+ A ++ +G + V+R+ R A ++LA L
Sbjct: 78 -EAGIGIIHQELNLIPQLTI------AENIFLGREFVNRFGRIDWKKMYAEADKLLARLN 130
Query: 150 LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188
L + + + EL+ E + V I L + ++++DEPT
Sbjct: 131 LRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPT 169
Score = 40.0 bits (94), Expect = 0.003
Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 26/197 (13%)
Query: 10 EEYYLKIDLQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRAL 69
E+ Y ++D G +V + + D+S +R GE+L V G G+G+ L
Sbjct: 243 EDQYPRLDKAP------GEVRLKVDN--LSGPGVNDVSFTLRKGEILGVSGLMGAGRTEL 294
Query: 70 LEVISRRSSGTTRGEIILDGTPMSPQLFQT--TCGYV-----NHRTDLIPSLTVEQTLYY 122
++V+ + T G + LDG + + Q G V R L+ ++V++ +
Sbjct: 295 MKVLY-GALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSL 353
Query: 123 AA--HLSIGPQVSRYVRNARIRQVLAD-LALSNVARRN----ISELTPSEHRRVVIGTQL 175
A + S + +++A +Q ++D + L N+ + I L+ ++V I L
Sbjct: 354 TALRYFS---RAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGL 410
Query: 176 VKDPVLLLLDEPTVNLD 192
+ P +L+LDEPT +D
Sbjct: 411 MTRPKVLILDEPTRGVD 427
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 43.5 bits (103), Expect = 2e-04
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 12/154 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+L + L + G+ +AV+G G GK LL +++ + + GE++ P++ T
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET-PSAGELLAGTAPLAEAREDTRL 85
Query: 102 GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISEL 161
+ + R L+P V ++G + R Q LA + L++ A + L
Sbjct: 86 MFQDAR--LLPWKKVID--------NVGLGLKGQWR-DAALQALAAVGLADRANEWPAAL 134
Query: 162 TPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
+ + +RV + L+ P LLLLDEP LD L+
Sbjct: 135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 44.2 bits (105), Expect = 2e-04
Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 36/180 (20%)
Query: 34 FG-NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDG 89
FG + ++++ SL ++PG+ +A++G GSGK I++ +G GEI+ DG
Sbjct: 485 FGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGK----STIAKLVAGLYQPWSGEILFDG 540
Query: 90 TP---MSPQLFQTTCGYVNHRTDLIPSLTVEQ--TLYYAAHLSIGPQVSRYVRNARIRQV 144
P + ++ + V+ L TV TL+ + +A + +
Sbjct: 541 IPREEIPREVLANSVAMVDQDIFLF-EGTVRDNLTLW-----------DPTIPDADLVRA 588
Query: 145 LADLALSNVARR-------NISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
D A+ +V ++E L+ + +R+ I LV++P +L+LDE T LDP
Sbjct: 589 CKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDP 648
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 43.2 bits (102), Expect = 2e-04
Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 22/179 (12%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---- 93
QT +K +S +R G+ LA++G GSGK L ++++ T+ GE+++D P+
Sbjct: 24 QTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS-GELLIDDHPLHFGDY 82
Query: 94 -------PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLA 146
+FQ + T L P + Q L + L + + R +I + L
Sbjct: 83 SYRSQRIRMIFQ------DPSTSLNPRQRISQILDFP--LRLNTDLEPEQREKQIIETLR 134
Query: 147 DLAL-SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD-PLSTYLIVSML 203
+ L + A L P + +R+ + L+ P +++ DE +LD + + LI ML
Sbjct: 135 QVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLML 193
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 43.5 bits (102), Expect = 2e-04
Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 24/191 (12%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMSP 94
Q +LK ++L+ V ++G+ G GK L +S G R G ++ G P+
Sbjct: 12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLS----GLLRPQKGAVLWQGKPLD- 66
Query: 95 QLFQTTCGYVNHRTDLIPSLT-VEQTLYYAAHLSIGPQVSRYVRNARI------RQVLAD 147
+ G + R + EQ ++Y I ++ +RN + R+V
Sbjct: 67 ---YSKRGLLALRQQVATVFQDPEQQIFYT---DIDSDIAFSLRNLGVPEAEITRRVDEA 120
Query: 148 LALSNVAR---RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
L L + + I L+ + +RV I LV LLLDEPT LDP +++++
Sbjct: 121 LTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIR 180
Query: 205 SYAKRKSRAVL 215
+ + ++
Sbjct: 181 RIVAQGNHVII 191
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 42.9 bits (101), Expect = 2e-04
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS-RRSSGTTRGEIILDG 89
IL+ ++LEVRPGEV A++G GSGK L ++ R T G + G
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 64
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 44.0 bits (104), Expect = 2e-04
Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 8/168 (4%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
IL DISL ++ ++G GSGK L +++ + GEI+L+G + T
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS-GEILLNGFSLKDIDRHTLR 547
Query: 102 GYVNH--RTDLIPSLTVEQTLYYAAHLSIGPQ-VSRYVRNARIRQVLADLAL---SNVAR 155
++N+ + I S ++ + L A ++ + A I+ + ++ L + ++
Sbjct: 548 QFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSE 607
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
S ++ + +R+ + L+ D +L+LDE T NLD ++ IV+ L
Sbjct: 608 EG-SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL 654
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 42.7 bits (100), Expect = 3e-04
Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 24/172 (13%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS---GTT-------RGEIILDGT 90
L L D+ L++ +++A +G G GK LL +R + G R I D
Sbjct: 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93
Query: 91 PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNAR--IRQVLADL 148
S +L + G V R + P E +++ P+ + Y N + L
Sbjct: 94 INSVKL-RRQVGMVFQRPNPFPKSIYE-------NIAFAPRANGYKGNLDELVEDSLRRA 145
Query: 149 ALSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196
A+ + + E L+ + +R+ I + P +LL+DEP LDP+ST
Sbjct: 146 AIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPIST 197
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se [Transport and binding proteins,
Anions].
Length = 1490
Score = 43.7 bits (103), Expect = 3e-04
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT---PMSPQLFQ 98
+L+D+S V G+ + +LG GSGK LL + R S T GEI +DG ++ Q ++
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWR 1291
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL--ALSNVARR 156
G + + I S T + L S ++ + ++ V+ L V
Sbjct: 1292 KAFGVIPQKV-FIFSGTFRKNLDPYEQWS-DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD 1349
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
L+ + + + ++ +LLLDEP+ +LDP++ +I
Sbjct: 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII 1392
Score = 41.0 bits (96), Expect = 0.002
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVI 73
+LK+IS ++ G++LAV GS GSGK +LL +I
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMI 472
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 42.3 bits (99), Expect = 4e-04
Identities = 39/186 (20%), Positives = 82/186 (44%), Gaps = 16/186 (8%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--GTTRGEIILD-------GTPMS 93
++ IS+++ +V A++G G GK ++ ++R S G + E ++D ++
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ G V R + P E Y + I ++ + + + L AL
Sbjct: 83 INRLRRQIGMVFQRPNPFPMSIYENVAY---GVRISAKLPQADLDEIVESALKGAALWQE 139
Query: 154 ARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
+ +++ L+ + +R+ I L P +LL+DEP LDP++T + ++ S
Sbjct: 140 VKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSE 199
Query: 210 KSRAVL 215
+ A++
Sbjct: 200 LTIAIV 205
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 43.0 bits (102), Expect = 4e-04
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALL 70
LIL D+SL++ PGE +A++G GSGK LL
Sbjct: 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLL 496
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 41.9 bits (99), Expect = 4e-04
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT-TRGEI------ILD 88
++ ILK ++L + GE+ A++G GSGK L +VI+ + G+I ILD
Sbjct: 16 SVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILD 75
Query: 89 GTP 91
P
Sbjct: 76 LEP 78
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 42.5 bits (100), Expect = 4e-04
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
R+ L+ + RRV I L P +L+ DEPT LDP + ++ ++ AK ++ V
Sbjct: 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD-AKANNKTVF 230
Query: 216 L---TMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
+ TME VL D + G ++ G
Sbjct: 231 VITHTMEH----VLEVADEVIVMDKGKILKTG 258
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 42.3 bits (100), Expect = 4e-04
Identities = 44/176 (25%), Positives = 66/176 (37%), Gaps = 46/176 (26%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRAL---LEVISRRSSGTTR--GEIILDGTPMSPQL- 96
L +S + G+ LAV+G G GK L L +I + G G+ +L P + +L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 97 -------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA 149
FQ G +N P V Q L L I +S R + ++A +
Sbjct: 91 RQKIQIVFQNPYGSLN------PRKKVGQIL--EEPLLINTSLSAAERREKALAMMAKVG 142
Query: 150 LSNVARRNISELTPSEH-------------RRVVIGTQLVKDPVLLLLDEPTVNLD 192
L EH +R+ I L+ DP +++ DEP LD
Sbjct: 143 LR------------PEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 41.7 bits (98), Expect = 6e-04
Identities = 36/179 (20%), Positives = 75/179 (41%), Gaps = 24/179 (13%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----SGTTRGEIILDGTPM---- 92
L +K++ L++ ++ A +G G GK +L +R + G++ G +
Sbjct: 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83
Query: 93 -SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRY-------VRNARIRQV 144
P + G V + + P + Y G +++ Y V + +
Sbjct: 84 VDPVEVRRRIGMVFQKPNPFPKSIYDNIAY-------GARINGYKGDMDELVERSLRQAA 136
Query: 145 LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
L D + + +++ L+ + +R+ I + P ++L+DEP LDP+ST I ++
Sbjct: 137 LWD-EVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELM 194
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 41.6 bits (98), Expect = 8e-04
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
R+ EL+ + RRV + L +P L+ DEPT LDP I+ + + K+ +L
Sbjct: 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIIL 220
Query: 216 LTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
+T + +VL + RT + G +I G T
Sbjct: 221 VTHD--LDNVLEWTKRTIFFKDGKIIKDGDT 249
Score = 34.3 bits (79), Expect = 0.15
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLE 71
L ++S+E+ GE +A++G GSGK +E
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIE 51
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The
CFTR subfamily domain 1. The cystic fibrosis
transmembrane regulator (CFTR), the product of the gene
mutated in patients with cystic fibrosis, has adapted
the ABC transporter structural motif to form a tightly
regulated anion channel at the apical surface of many
epithelia. Use of the term assembly of a functional ion
channel implies the coming together of subunits, or at
least smaller not-yet functional components of the
active whole. In fact, on the basis of current
knowledge only the CFTR polypeptide itself is required
to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2.
Length = 282
Score = 41.4 bits (97), Expect = 8e-04
Identities = 17/32 (53%), Positives = 26/32 (81%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVI 73
+LK+I+L++ GE+LA+ GS GSGK +LL +I
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLI 83
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 40.9 bits (96), Expect = 0.001
Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 22/186 (11%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
LK +SL + G A+LG G+GK LL ++ RG + + G ++ +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL-PQRGRVKVMGREVNAE----NEK 75
Query: 103 YVNHRTDLI---P-----SLTVEQTLYYAAHLSIGPQ---VSRYVRNARIRQVLADLALS 151
+V + L+ P S TV + + GP + + R+ + L + +
Sbjct: 76 WVRSKVGLVFQDPDDQVFSSTVWDDVAF------GPVNMGLDKDEVERRVEEALKAVRMW 129
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
+ + L+ + +RV I L DP +++LDEP LDP ++ +L +
Sbjct: 130 DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGK 189
Query: 212 RAVLLT 217
++ T
Sbjct: 190 TVIVAT 195
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 41.0 bits (96), Expect = 0.001
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 29/177 (16%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT---PMSPQLFQ 98
+L++IS + PG+ + +LG GSGK LL R + T G+I +DG + Q ++
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQKWR 76
Query: 99 TTCGYVNHRTDLIPSLTVEQTL-YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
G + + I S T + L Y + I +V ++ L +V +
Sbjct: 77 KAFGVIPQKV-FIFSGTFRKNLDPYGKW-----------SDEEIWKVAEEVGLKSVIEQF 124
Query: 158 ISELT----------PSEHRRVV-IGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
+L H++++ + ++ +LLLDEP+ +LDP++ +I L
Sbjct: 125 PGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTL 181
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 41.5 bits (98), Expect = 0.001
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 31/163 (19%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR-SSGTTRGEIIL---DGTPMSPQL 96
+L +++ EVRPGE L + G G+GK +LL ++ G+ G I + PQ
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS--GRISMPADSALLFLPQR 464
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
Y +P T+ + L Y P + +A + VL + L ++A R
Sbjct: 465 -----PY-------LPQGTLREALCY-------PNAAPDFSDAELVAVLHKVGLGDLAER 505
Query: 157 --NIS----ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
L+ E +R+ L+ P + LDE T LD
Sbjct: 506 LDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 40.9 bits (96), Expect = 0.001
Identities = 38/172 (22%), Positives = 81/172 (47%), Gaps = 22/172 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDGTPM-----S 93
+K++ ++ G+V A++G G GK +L ++R + +G ++ DGT +
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNAR--IRQVLADLALS 151
P + G V + + P E +++ G +++ Y + + + L A+
Sbjct: 89 PVEVRRRIGMVFQQPNPFPKSIYE-------NIAFGARINGYTGDMDELVERSLRKAAVW 141
Query: 152 NVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
+ + ++E L+ + +R+ I + +P ++L+DEP LDP+ST I
Sbjct: 142 DECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKI 193
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 40.6 bits (95), Expect = 0.002
Identities = 47/201 (23%), Positives = 75/201 (37%), Gaps = 48/201 (23%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDGTPMSPQLFQ 98
LK +S+++ V A++G G GK L ++R + G + LDG ++Q
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQ----DIYQ 116
Query: 99 TTCGYVNHRTDL---------IPSLTVEQTLY-----------YAAHL-------SIGPQ 131
V R + P E Y A L +
Sbjct: 117 DGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDEL 176
Query: 132 VSRYVRNA----RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187
V R +R A + L D AL L+ + +R+ I L DP ++L+DEP
Sbjct: 177 VERSLRQAALWDEVNDRLDDNALG---------LSGGQQQRLCIARCLAVDPEVILMDEP 227
Query: 188 TVNLDPLSTYLIVSMLSSYAK 208
LDP++T I ++ A+
Sbjct: 228 ASALDPIATSKIEDLIEELAE 248
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 40.5 bits (95), Expect = 0.002
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 8/159 (5%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQ 98
+ LKD+S + G+ +++G GSGK + +++ GEI + ++ F+
Sbjct: 21 ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-VKSGEIFYNNQAITDDNFE 79
Query: 99 TT---CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARI-RQVLADLALSNVA 154
G V D + V + Y + Y R + L + + A
Sbjct: 80 KLRKHIGIVFQNPD---NQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA 136
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
+ L+ + +RV I L +P +++LDE T LDP
Sbjct: 137 DYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDP 175
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 40.4 bits (95), Expect = 0.003
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 20/192 (10%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---SPQLFQT 99
L++I+ ++ G+ +A++G GSGK + +++R GEI+LDG + + +
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD-IDEGEILLDGHDLRDYTLASLRN 417
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRY--VRNARIRQVL-----ADLALSN 152
V+ L T+ + YA Q SR AR+ + D L
Sbjct: 418 QVALVSQNVHLFND-TIANNIAYAR----TEQYSREQIEEAARMAYAMDFINKMDNGLDT 472
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
V N L+ + +R+ I L++D +L+LDE T LD S I + L K ++
Sbjct: 473 VIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTS 532
Query: 213 AV----LLTMEK 220
V L T+EK
Sbjct: 533 LVIAHRLSTIEK 544
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 40.1 bits (94), Expect = 0.003
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 34/170 (20%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTT 100
L+L++I+L V +A++G GSGK L ++ T GEI LDG P+S
Sbjct: 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP-LTEGEIRLDGRPLSS------ 407
Query: 101 CGYVNHRTDLIPSLTVEQ-------TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
++H V+Q T A++++G R + ++ Q L + L+ +
Sbjct: 408 ---LSHSVLRQGVAMVQQDPVVLADTFL--ANVTLG----RDISEEQVWQALETVQLAEL 458
Query: 154 ARR-------NISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
AR + E L+ + + + + LV+ P +L+LDE T N+D
Sbjct: 459 ARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANID 508
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 39.9 bits (94), Expect = 0.004
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 41/172 (23%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
++D+S E +PG+ +A++G G+GK L+ ++ R + G I++DGT
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS-GRILIDGT------------ 397
Query: 103 YVNHRTDLIPSL-----TVEQT--LY---YAAHLSIG-PQVSRYVRNARIRQVL-ADLAL 150
+ RT SL V Q L+ ++ +G P + + +R A
Sbjct: 398 --DIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDAT----DEEMRAAAERAQAH 451
Query: 151 SNVARR------NISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ R+ + E L+ E +R+ I L+KDP +L+LDE T LD
Sbjct: 452 DFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALD 503
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 38.8 bits (90), Expect = 0.005
Identities = 51/236 (21%), Positives = 103/236 (43%), Gaps = 39/236 (16%)
Query: 28 SC-FQRVF-GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR--------RS 77
C ++F GN + ++D + +R E+ +G G GK +L ++R R
Sbjct: 10 DCKLDKIFYGNF---MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRF 66
Query: 78 SGTTR--GEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRY 135
G G+ + G + P + + G V + + S+++ +++ G +++RY
Sbjct: 67 EGHVHFLGQDVY-GKGVDPVVVRRYIGMVFQQPNPF-SMSIFD------NVAFGLRLNRY 118
Query: 136 VRNA--RIRQVLADLALSNVARRNIS----ELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189
+ R++ L AL + + + L+ + +R+ I + +P +LLLDEP
Sbjct: 119 KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCS 178
Query: 190 NLDPLSTYLIVSMLSSYAKRKSRAVLL-TMEKPR--SDVLPFLD-------RTAYL 235
LDP++T + ++ K + A++ M++ +D F RT YL
Sbjct: 179 ALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYL 234
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 38.9 bits (91), Expect = 0.006
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
L++++ ++PG++L + G GSGK LL +I R + G+I P++
Sbjct: 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD-VSEGDIRFHDIPLT 380
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 38.7 bits (91), Expect = 0.008
Identities = 38/202 (18%), Positives = 84/202 (41%), Gaps = 43/202 (21%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMS-- 93
+ ++ + G+ +A++G G+GK +LL + G +G + ++G +
Sbjct: 361 DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALL----GFLPYQGSLKINGIELREL 416
Query: 94 ---------------PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN 138
PQL T + + + Q+ + + N
Sbjct: 417 DPESWRKHLSWVGQNPQLPHGT---------------LRDNVLLGNPDASDEQLQQALEN 461
Query: 139 ARIRQVLADLAL---SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
A + + L L + + + L+ + +R+ + L++ LLLLDEPT +LD S
Sbjct: 462 AWVSEFLPLLPQGLDTPIGDQAAG-LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520
Query: 196 TYLIVSMLSSYAKRKSRAVLLT 217
L++ L++ ++R++ +++T
Sbjct: 521 EQLVMQALNAASRRQT-TLMVT 541
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 38.7 bits (90), Expect = 0.009
Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 31/175 (17%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKR----ALLEVISRRSSGTTRGEIIL--------DGT 90
++++S ++ GE LA++G GSGK AL+ ++ + +++L + +
Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91
Query: 91 PMSPQLFQTTCG------YVNHRTDLIPSLTVEQTLYYAAHLSIG-------PQVSRYVR 137
S + G + T L P TV + + + L G + R +
Sbjct: 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLD 151
Query: 138 NARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
RI + L+ R +L+ +RV+I L P +L+ DEPT LD
Sbjct: 152 QVRIPEAQTILS------RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALD 200
Score = 36.0 bits (83), Expect = 0.055
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 9/51 (17%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDG 89
++ +S ++ PGE L+++G GSGK RALL ++ + GEII +G
Sbjct: 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQG-----GEIIFNG 385
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 38.1 bits (88), Expect = 0.011
Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 10/155 (6%)
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRA 213
+R+ EL+ + RRV + + D L+LDEPT LDP +++ K +
Sbjct: 144 VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKR 203
Query: 214 VLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCP-ELENPLMYYLC 272
+++ VL D + G +I G E F + E++ P +Y L
Sbjct: 204 IIMVTHN-MDQVLRIADEVIVMHEGKVISIGSP---FEIFSNQELLTKIEIDPPKLYQLM 259
Query: 273 LSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRK 307
+ + + I+ N+ + +E+F E A K
Sbjct: 260 Y-----KLKNKGIDLLNKNIRTIEEFAKELAKVLK 289
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 37.8 bits (88), Expect = 0.012
Identities = 52/213 (24%), Positives = 82/213 (38%), Gaps = 46/213 (21%)
Query: 34 FGNIQTALILKD-ISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM 92
FG+ D IS V+ GEV+ ++G GSGK SS G I G M
Sbjct: 13 FGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSV--------SSLAIMGLIDYPGRVM 64
Query: 93 SPQL--------------------------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHL 126
+ +L FQ + T L P TV + A +
Sbjct: 65 AEKLEFNGQDLQRISEKERRNLVGAEVAMIFQ------DPMTSLNPCYTVGFQIMEAIKV 118
Query: 127 SIGPQVSRYVRNARIRQVLADLALSNVARR---NISELTPSEHRRVVIGTQLVKDPVLLL 183
G ++ R R +L + + + A R +L+ +RV+I + P LL+
Sbjct: 119 HQGG--NKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLI 176
Query: 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
DEPT LD I+ +L ++++ A++L
Sbjct: 177 ADEPTTALDVTIQAQIIELLLELQQKENMALVL 209
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 37.9 bits (88), Expect = 0.013
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 160 ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
ELT E ++V+I L P LL+ DEPT ++P + I +L+ + + +LL
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILL 214
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 38.5 bits (89), Expect = 0.014
Identities = 17/60 (28%), Positives = 37/60 (61%)
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
N S+L+ + +R+ I ++++P +L+LDE T +LD S YL+ +++ ++R ++
Sbjct: 576 NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITII 635
Score = 33.8 bits (77), Expect = 0.33
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 161 LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
L+ + +R+ I L+++P +LLLDE T +LD S LI
Sbjct: 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLI 1397
Score = 31.9 bits (72), Expect = 1.1
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILD 88
I KD++ + G+ A +G G GK +L++I R T G+II++
Sbjct: 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD-PTEGDIIIN 445
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 37.4 bits (87), Expect = 0.015
Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 35/220 (15%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPM-SPQL- 96
+K I ++ ++ A++G GSGK L ++R + G+I+ G + ++
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 97 ---FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ--------VSRYVRNARI-RQV 144
+ G V R + E + A G + V ++ A + QV
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITF--ALERAGVKDKKVLDEIVETSLKQAALWDQV 153
Query: 145 LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
DL S + L+ + +R+ I + P +LL+DEP LDP+ST + +
Sbjct: 154 KDDLHKSALT------LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMF 207
Query: 205 SYAKRKSRAVLLT--MEKP-RSDVLPFLDRTAYLCLGDLI 241
K+ +++T M++ R+ D TA+ LGDLI
Sbjct: 208 EL-KKNYTIIIVTHNMQQAARAS-----DYTAFFYLGDLI 241
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 37.5 bits (87), Expect = 0.019
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 7/53 (13%)
Query: 46 ISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIILDGTPMSPQ 95
I+L ++ GE++ ++G GSGK L +++ + S GEI+LDG P+S +
Sbjct: 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQS----GEILLDGKPVSAE 390
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 36.2 bits (84), Expect = 0.025
Identities = 36/158 (22%), Positives = 73/158 (46%), Gaps = 16/158 (10%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+LK++S +V+ GE + ++G G+GK L+ + R G+I +DG +S +
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE-GKIEIDGIDISTIPLED-- 79
Query: 102 GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISEL 161
+ +IP + TL+ +I + + + ++ L +S L
Sbjct: 80 --LRSSLTIIPQ---DPTLFSG---TIRSNLDPFDEYSD-EEIYGALRVSEGG----LNL 126
Query: 162 TPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
+ + + + + L+K P +L+LDE T ++D + LI
Sbjct: 127 SQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI 164
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 37.2 bits (87), Expect = 0.028
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
SE+ P RV++ L +P +LLLDEPT NLD
Sbjct: 154 SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLD 187
Score = 32.6 bits (75), Expect = 0.70
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALL 70
+ K+++L + GE LA++G G GK LL
Sbjct: 334 LFKNLNLLLEAGERLAIIGENGVGKTTLL 362
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 35.6 bits (82), Expect = 0.039
Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 12/165 (7%)
Query: 28 SCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL 87
S Q F Q L D+S+ P + + G+ G GK +LL +I+ ++ G I
Sbjct: 3 SLHQLQFNIEQKNLF--DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSS-GNIYY 59
Query: 88 DGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLAD 147
++ + + C Y+ H L +TV + L + + + Y + +
Sbjct: 60 KNCNIN-NIAKPYCTYIGHNLGLKLEMTVFENLKFWSEI--------YNSAETLYAAIHY 110
Query: 148 LALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L ++ L+ + V I + L LLDE NL
Sbjct: 111 FKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 35.8 bits (83), Expect = 0.039
Identities = 41/169 (24%), Positives = 65/169 (38%), Gaps = 46/169 (27%)
Query: 50 VRPGEVLAVLGSKGSGKRALLEVIS-----------------------RRSSGTTRGEII 86
R G+VL ++G G GK L++++ R S +
Sbjct: 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82
Query: 87 LDGT---PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ 143
L+G + PQ YV DLIP A +G + + ++ +
Sbjct: 83 LEGDVKVIVKPQ-------YV----DLIPK---------AVKGKVGELLKKKDERGKLDE 122
Query: 144 VLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
++ L L +V RNI +L+ E +RV I L +D DEP+ LD
Sbjct: 123 LVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 36.5 bits (84), Expect = 0.057
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG 89
L+L+ I++ + GE + ++G G+GK +L + R + + GEII+DG
Sbjct: 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE-SAEGEIIIDG 1347
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 36.0 bits (83), Expect = 0.063
Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 27/165 (16%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
FG L+ K+++ + +A++G G GK +L++IS GE+ P S
Sbjct: 516 FGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIS--------GEL----QPSS 563
Query: 94 PQLFQTT----CGYVNHRTDLIPSLTVEQT-LYYAAHLSIGPQVSRYVRNARIRQVLADL 148
+F++ + H D L + L Y G V ++R L
Sbjct: 564 GTVFRSAKVRMAVFSQHHVD---GLDLSSNPLLYMMRCFPG------VPEQKLRAHLGSF 614
Query: 149 ALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
++ N+A + + L+ + RV K P +LLLDEP+ +LD
Sbjct: 615 GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
Score = 35.6 bits (82), Expect = 0.091
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 131 QVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189
+ Y AR +LA L+ + + + + R+ + L +P LLLLDEPT
Sbjct: 314 LIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTN 373
Query: 190 NLDP-----LSTYLI 199
+LD L TYL+
Sbjct: 374 HLDLHAVLWLETYLL 388
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 35.5 bits (81), Expect = 0.064
Identities = 37/177 (20%), Positives = 73/177 (41%), Gaps = 8/177 (4%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---LFQT 99
L +S + GE ++++G GSGK +I G++ +DG ++ + +
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE-EFEGKVKIDGELLTAENVWNLRR 81
Query: 100 TCGYVNHRTD-LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
G V D TVE + + + R R+ + L + + + R
Sbjct: 82 KIGMVFQNPDNQFVGATVEDDVAFGME---NQGIPREEMIKRVDEALLAVNMLDFKTREP 138
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
+ L+ + +RV + + P +++LDE T LDP I+ ++ ++ VL
Sbjct: 139 ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVL 195
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 35.5 bits (83), Expect = 0.074
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALL 70
ILKDISL PG + VLG G+GK LL
Sbjct: 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLL 50
Score = 35.5 bits (83), Expect = 0.095
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+++L+ E RRV + L++ P +LLLDEPT +LD
Sbjct: 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form
(CCALD), the milder adult form, adrenomyeloneuropathy
(AMN), and variants without neurologic involvement
(i.e. asymptomatic).
Length = 166
Score = 34.4 bits (80), Expect = 0.080
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS 74
++LKD+S E++PG+ L + G G+GK +L ++
Sbjct: 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALA 48
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 33.8 bits (78), Expect = 0.12
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 116 VEQTLYYAAHLSIGPQVSRYVRNARIR----QVLADLALSNVA-RRNISELTPSEHRRVV 170
V + LY + + + ++ RN I Q L D+ L + + +S L+ E +RV
Sbjct: 38 VNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVK 97
Query: 171 IGTQLVKDP--VLLLLDEPTVNLDPLSTYLIVSML 203
+ ++L +P L +LDEP+ L ++ ++
Sbjct: 98 LASELFSEPPGTLFILDEPSTGLHQQDINQLLEVI 132
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 34.9 bits (80), Expect = 0.12
Identities = 43/191 (22%), Positives = 71/191 (37%), Gaps = 39/191 (20%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMSP----- 94
L I L + G+++ ++G G GK L ++ G GEI+LDG +S
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLF----CGLYIPQEGEILLDGAAVSADSRDD 413
Query: 95 --QLFQTTCGYVNHRTDLI-------PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVL 145
LF + DLI SL Q Y L I +V +
Sbjct: 414 YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQ--YLQRLEIADKVK-----------I 460
Query: 146 ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
D S + L+ + +R+ + ++D +LL DE + DP L
Sbjct: 461 EDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515
Query: 206 YAKRKSRAVLL 216
KR+ + +++
Sbjct: 516 DLKRQGKTIII 526
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 34.7 bits (80), Expect = 0.17
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT 90
L +I+L+V G ++A++GS G GK +L+ + + +++ GT
Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGT 680
Score = 33.6 bits (77), Expect = 0.39
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 18/76 (23%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG------------ 89
+L +S E+ P E + ++G G+GK ++L + R RG I++DG
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE-LERGRILIDGCDISKFGLMDLR 1312
Query: 90 -----TPMSPQLFQTT 100
P +P LF T
Sbjct: 1313 KVLGIIPQAPVLFSGT 1328
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 33.9 bits (78), Expect = 0.19
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 29/167 (17%)
Query: 44 KDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDG---TPMSPQ- 95
++L + GE L V+G G GK RA++ ++ T GE+ G M
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK-----ATDGEVAWLGKDLLGMKDDE 92
Query: 96 ----------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVL 145
+FQ +N R I + E Y LS +V V+ ++ L
Sbjct: 93 WRAVRSDIQMIFQDPLASLNPRMT-IGEIIAEPLRTYHPKLS-RQEVKDRVKAMMLKVGL 150
Query: 146 ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L N+ R E + + +R+ I L+ +P L++ DEP LD
Sbjct: 151 ----LPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD 193
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 34.0 bits (78), Expect = 0.29
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 21 PALVETGSCFQRVFGNIQT------ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS 74
P V+ GS VF +Q L+L+ +S + P E + ++G GSGK LL
Sbjct: 1301 PHPVQAGSL---VFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFM 1357
Query: 75 RRSSGTTRGEIILDGTPM 92
R GEI ++G +
Sbjct: 1358 RMVE-VCGGEIRVNGREI 1374
Score = 34.0 bits (78), Expect = 0.32
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLE 71
+L+D+S+ V G++ VLG+ GSGK LL+
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQ 704
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA
and the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial
binding of EF-G as well. The dissociation of EF-G
leaves the ribosome ready to accept the next
aminoacyl-tRNA into the A site. This group contains
only bacterial members.
Length = 268
Score = 32.6 bits (75), Expect = 0.45
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 56 LAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
+A++G GSGK L E + + R + DG +S
Sbjct: 2 IALVGHSGSGKTTLAEALLYATGAIDRLGRVEDGNTVS 39
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 32.8 bits (75), Expect = 0.61
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 19/154 (12%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTT 100
+IL I L + PG + +LG G+GK L+++++ + GEI L Q
Sbjct: 326 IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA-PVSGEIGLAKGIKLGYFAQHQ 384
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLS-IGPQVSRYVRNARIRQVLADLALSNVARRNIS 159
++ R D P HL+ + PQ ++R L +
Sbjct: 385 LEFL--RADESP----------LQHLARLAPQELE----QKLRDYLGGFGFQGDKVTEET 428
Query: 160 E-LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ E R+V+ + + P LLLLDEPT +LD
Sbjct: 429 RRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 32.4 bits (73), Expect = 0.63
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 174 QLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
+ LLL+DEP L P +V +L +++ ++ ++ T
Sbjct: 206 SALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQ-LIFT 248
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 549
Score = 32.6 bits (74), Expect = 0.69
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVIS 74
L +IS EV GE++ ++G GSGK L +I+
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIA 71
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 32.6 bits (74), Expect = 0.78
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 18/76 (23%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG------------ 89
+L +S V P E + V+G G+GK ++L + R +G I++D
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE-LEKGRIMIDDCDVAKFGLTDLR 1309
Query: 90 -----TPMSPQLFQTT 100
P SP LF T
Sbjct: 1310 RVLSIIPQSPVLFSGT 1325
Score = 31.1 bits (70), Expect = 2.3
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT----PMSPQLFQ 98
L DI+LE+ G ++A++G G GK +L+ + S +++ G+ P +F
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFN 692
Query: 99 TT 100
T
Sbjct: 693 AT 694
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only
detects a fraction of this vast family. The poorly
conserved N-terminal helix is missing from the
alignment.
Length = 148
Score = 30.4 bits (68), Expect = 1.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 52 PGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQ 98
PGEV+ ++G GSGK L ++R G I +DG + ++
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLD 47
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 30.9 bits (70), Expect = 1.4
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG 89
+T L DISL+ G+V+ ++G GSGK L +I S T G++ +G
Sbjct: 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIG-GSLSPTVGKVDRNG 85
>gnl|CDD|219123 pfam06653, Claudin_3, Tight junction protein, Claudin-like. This
is a family of probable membrane tight junction,
Claudin-like, proteins.
Length = 165
Score = 30.4 bits (69), Expect = 1.5
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 5/98 (5%)
Query: 388 LYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAEYLS 447
L + + S +I+ V WI L S ++ + ++
Sbjct: 2 LRVKLKALGVLVVISFILNIVGVFTPGWITDTGGFLEPS-----IGIVPFYSTEGGWLVA 56
Query: 448 VALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSM 485
+ ++ + ++ YI + V +GY R +
Sbjct: 57 ASWMMYISFALFLVLILIYIVAVRKVKKNGYSHYQRKL 94
>gnl|CDD|235619 PRK05826, PRK05826, pyruvate kinase; Provisional.
Length = 465
Score = 31.3 bits (72), Expect = 1.6
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 19/68 (27%)
Query: 127 SIGPQVSRYVRNARIRQVLADLALS--NVARRNISELTPSEHRRVVIGTQLVKD------ 178
++GP + L L + NV R N S + EH + LV++
Sbjct: 11 TLGPASDSP-------ENLEKLIEAGVNVVRLNFSHGSHEEHGKRA---ALVREIAAKLG 60
Query: 179 -PVLLLLD 185
PV +LLD
Sbjct: 61 RPVAILLD 68
>gnl|CDD|145416 pfam02252, PA28_beta, Proteasome activator pa28 beta subunit. PA28
activator complex (also known as 11s regulator of 20S
proteasome) is a ring shaped hexameric structure of
alternating alpha and beta subunits. This family
represents the beta subunit. The activator complex binds
to the 20S proteasome ana simulates peptidase activity
in and ATP-independent manner.
Length = 150
Score = 30.3 bits (69), Expect = 1.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 284 FIESNNQIVALVEKFKIEGAPYRKCASSVIM 314
F+ SN +IVAL+EK K E + + V +
Sbjct: 4 FVPSNEKIVALLEKVKPEIRELIEKCNLVKL 34
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 30.7 bits (70), Expect = 1.8
Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 33/183 (18%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRAL-LEVI----SRRS----SGTTRGEIILDGTPMS 93
LK++ +++ +++ + G GSGK +L + I RR S R + P
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKP-- 68
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQ-TLYYAAHLSIGP--QVSRYVR----NARIR---Q 143
V+ L P++ ++Q T ++G ++ Y+R IR
Sbjct: 69 ---------DVDSIEGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLG 119
Query: 144 VLADLALSNVA-RRNISELTPSEHRRVVIGTQLVK--DPVLLLLDEPTVNLDPLSTYLIV 200
L D+ L + R+ L+ E +R+ + TQ+ VL +LDEP++ L P ++
Sbjct: 120 FLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLI 179
Query: 201 SML 203
L
Sbjct: 180 ETL 182
>gnl|CDD|201524 pfam00954, S_locus_glycop, S-locus glycoprotein family. In
Brassicaceae, self-incompatible plants have a
self/non-self recognition system. This is
sporophytically controlled by multiple alleles at a
single locus (S). S-locus glycoproteins, as well as
S-receptor kinases, are in linkage with the S-alleles.
Length = 110
Score = 29.2 bits (66), Expect = 2.0
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 18/71 (25%)
Query: 351 NGLIFSSI----SGSYFISTFI-----AAFTFPVHRTRYYQEAQEGLYSGPLFILTYI-- 399
NG+ FS I SY++ F +T+ + Y G L T+I
Sbjct: 7 NGIRFSGIPEMQKLSYYVYNFTENNEEVYYTYRMTNNSIYSRLTLS-SEGSLERFTWIPN 65
Query: 400 ------FFSLP 404
F+S P
Sbjct: 66 SQDWNLFWSAP 76
>gnl|CDD|203425 pfam06328, Lep_receptor_Ig, Ig-like C2-type domain. This domain is
a ligand-binding immunoglobulin-like domain. The two
cysteine residues form a disulphide bridge.
Length = 89
Score = 28.6 bits (64), Expect = 2.3
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 285 IESNNQIVALVEKFKIEGAPYRKC---ASSVIMDHGNSTIPSLTSHKMP 330
S +I+ + KI YR+ SSV + NS P+LT K+
Sbjct: 34 SVSAKKILWKLNLAKIPEEQYRRINDTTSSVTFPNLNSLNPALTCCKLA 82
>gnl|CDD|181221 PRK08072, PRK08072, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 277
Score = 30.4 bits (69), Expect = 2.3
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 30 FQRVFGNIQTALILKDISLEVRPGEVLAVLGSKG------SGKRALLEVISRRS 77
++ + I+ L KD V+ GE++A + +G +G+R +L +I R S
Sbjct: 57 YKLLDERIEVELHKKD-GDLVKKGEIIATV--QGPVASLLTGERVILNLIQRMS 107
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 30.7 bits (70), Expect = 2.5
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRA---LLEVISRRSSGTTRGEIILDGTPMSPQ 95
+ I+L ++ GE+L ++G GSGK LL + + S GEI+LDG P++ +
Sbjct: 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQS----GEILLDGKPVTAE 390
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 31.0 bits (70), Expect = 2.7
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRAL 69
LK+IS+E P E++ + G GSGK +L
Sbjct: 16 LKNISIEFCPREIVLLTGVSGSGKSSL 42
>gnl|CDD|223545 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and
metabolism].
Length = 477
Score = 30.6 bits (70), Expect = 2.9
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 15/67 (22%)
Query: 128 IGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKD-------PV 180
+GP + + L + + NV R N S EH++ + V++ PV
Sbjct: 13 LGPATESE---EMLEK-LIEAGM-NVVRLNFSHGDHEEHKKRI---DNVREAAEKLGRPV 64
Query: 181 LLLLDEP 187
+LLD
Sbjct: 65 AILLDLK 71
>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated
Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like
families. RERG (Ras-related and Estrogen- Regulated
Growth inhibitor) and Ras-like 11 are members of a novel
subfamily of Ras that were identified based on their
behavior in breast and prostate tumors, respectively.
RERG expression was decreased or lost in a significant
fraction of primary human breast tumors that lack
estrogen receptor and are correlated with poor clinical
prognosis. Elevated RERG expression correlated with
favorable patient outcome in a breast tumor subtype that
is positive for estrogen receptor expression. In
contrast to most Ras proteins, RERG overexpression
inhibited the growth of breast tumor cells in vitro and
in vivo. RasL11 was found to be ubiquitously expressed
in human tissue, but down-regulated in prostate tumors.
Both RERG and RasL11 lack the C-terminal CaaX
prenylation motif, where a = an aliphatic amino acid and
X = any amino acid, and are localized primarily in the
cytoplasm. Both are believed to have tumor suppressor
activity.
Length = 166
Score = 29.6 bits (67), Expect = 3.4
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 56 LAVLGSKGSGKRALL-EVISRRSSG--------TTRGEIILDGTPMSPQLFQTTC 101
+AVLG+ G GK AL +++R G ++ +DG +S ++ T
Sbjct: 2 IAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPG 56
>gnl|CDD|223455 COG0378, HypB, Ni2+-binding GTPase involved in regulation of
expression and maturation of urease and hydrogenase
[Posttranslational modification, protein turnover,
chaperones / Transcription].
Length = 202
Score = 29.5 bits (67), Expect = 3.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 49 EVRPGEVLAVLGSKGSGKRALLEVISRR 76
+ RP + V G GSGK AL+E R
Sbjct: 9 KNRPMLRIGVGGPPGSGKTALIEKTLRA 36
>gnl|CDD|233951 TIGR02614, ftsW, cell division protein FtsW. This family consists
of FtsW, an integral membrane protein with ten
transmembrane segments. In general, it is one of two
paralogs involved in peptidoglycan biosynthesis, the
other being RodA, and is essential for cell division.
All members of the seed alignment for this model are
encoded in operons for the biosynthesis of
UDP-N-acetylmuramoyl-pentapeptide, a precursor of murein
(peptidoglycan). The FtsW designation is not used in
endospore-forming bacterial (e.g. Bacillus subtilis),
where the member of this family is designated SpoVE and
three or more RodA/FtsW/SpoVE family paralogs are
present. SpoVE acts in spore cortex formation and is
dispensible for growth. Biological rolls for FtsW in
cell division include recruitment of penicillin-binding
protein 3 to the division site [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan, Cellular processes, Cell division].
Length = 356
Score = 29.8 bits (68), Expect = 3.7
Identities = 38/199 (19%), Positives = 69/199 (34%), Gaps = 44/199 (22%)
Query: 345 WSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLP 404
+ F+ R Y + I F R++++ S P+ ++ + L
Sbjct: 35 FYFLKRQLF--------YALLGLILMFVASRLPLRFWRK-----LSVPILLIAIVLLVLV 81
Query: 405 FSI---LSV-GAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAE---------------- 444
V GA WI + S + + +L+++ + A
Sbjct: 82 LIPGIGKEVNGARRWIGLGGFSIQPS-EFAKLALIIYLAWYLARKQKEVKSFLKFLKPLA 140
Query: 445 --YLSVALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSM------AEWLVYMSYGT 496
L V LLL+++ F VV +I + L L LR F + ++ +S
Sbjct: 141 VLGLLVGLLLLLQPDFGTTVVIFFITLGMLFLAGAPLRYFALLLLLGLLGGAILIVSSPY 200
Query: 497 QARYVGAFL--SRQMFGDG 513
+ R + +FL FG G
Sbjct: 201 RMRRILSFLDPWADPFGSG 219
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit
that fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 29.5 bits (66), Expect = 4.9
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQT 99
+LK + ++PG+ + + G GSGK + L + R G+I++DG +S T
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSS-LSLAFFRMVDIFDGKIVIDGIDISKLPLHT 92
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 29.1 bits (65), Expect = 5.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 160 ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+L+ E +RV I L+++ L DEP+ LD
Sbjct: 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 29.3 bits (66), Expect = 5.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 167 RRVVIGTQLVKDPVLLLLDEPTVNLD 192
+RV+I L+ P LL+ DEPT LD
Sbjct: 168 QRVMIAMALLCRPKLLIADEPTTALD 193
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 28.7 bits (65), Expect = 6.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 181 LLLLDEPTVNLDP 193
+L LDEPT NLD
Sbjct: 142 ILALDEPTTNLDE 154
>gnl|CDD|224677 COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis
protein [Coenzyme metabolism].
Length = 161
Score = 28.5 bits (64), Expect = 7.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 55 VLAVLGSKGSGKRALLEVISRRSSG 79
+L ++G K SGK L+E + R+
Sbjct: 4 ILGIVGYKNSGKTTLIEKLVRKLKA 28
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 29.2 bits (66), Expect = 8.0
Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 24/91 (26%)
Query: 77 SSGTTRGEIILDGTPMSPQLFQTTCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSR 134
+SGTT G P + L +V NH DL+P T + A LS G
Sbjct: 171 TSGTT-------GRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHG----- 218
Query: 135 YVRNARIRQVLADLALSNVARRNISELTPSE 165
A I Q L VAR + L PSE
Sbjct: 219 ----AGIHQ------LCQVARGAATVLLPSE 239
>gnl|CDD|219835 pfam08426, ICE2, ICE2. ICE2 is a fungal ER protein which has been
shown to play an important role in forming/maintaining
the cortical ER. It has also bee identified as a protein
which is necessary for nuclear inner membrane targeting.
Length = 406
Score = 28.9 bits (65), Expect = 9.4
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 352 GLIFS-SISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLP-FSILS 409
GL FS ++ YFI T + T R+ +++ + YS I + + L FS
Sbjct: 29 GLAFSLTLFVLYFILTTLKLLT---RRSSWFRWSSILYYSQHFIIPSLLILFLSYFSNDE 85
Query: 410 VGAASWIIFQA----------TGLSTSTDLFQ 431
+ +W+++ T LS ST +F
Sbjct: 86 LNKKNWVLYLFYYSGLVEPWDTLLSYSTPVFT 117
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.408
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,450,085
Number of extensions: 3152920
Number of successful extensions: 4936
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4572
Number of HSP's successfully gapped: 562
Length of query: 606
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 503
Effective length of database: 6,369,140
Effective search space: 3203677420
Effective search space used: 3203677420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (27.6 bits)