RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10223
(606 letters)
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 109 bits (276), Expect = 5e-27
Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 17/221 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG-----TPMSPQL 96
ILK IS ++ G+ + G G+GK LL +++ T G + L G S +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-ATSGTVNLFGKMPGKVGYSAET 94
Query: 97 FQTTCGYVN--HRTDLIPSLTVEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNV 153
+ G+V+ V + A SIG Q Q+L + +S
Sbjct: 95 VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAK 154
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR-KSR 212
A++ I L+ E +RV+I L+ P +L+LDEP LD ++ ++S+L S + +
Sbjct: 155 AQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTL 214
Query: 213 AVLLT---MEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
A++ +E ++ + L G I G +L
Sbjct: 215 AMIYVTHFIE----EITANFSKILLLKDGQSIQQGAVEDIL 251
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 96.0 bits (240), Expect = 8e-23
Identities = 38/203 (18%), Positives = 81/203 (39%), Gaps = 22/203 (10%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPMSPQLFQ 98
L+ I++ + G V+ G G GK + + + +GEII +G P++ +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPITK--VK 77
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
++ + ++VE L A L I L + + ++ ++ +
Sbjct: 78 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK-L 131
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTM 218
EL+ RRV + + L+ + + +LD+P V +D S + ++ + K K ++ +
Sbjct: 132 GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS- 190
Query: 219 EKPRSDVLPFLDRTAYLCLGDLI 241
+ L + D L
Sbjct: 191 ----REELSYCDVNENLHKYSTK 209
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 90.7 bits (226), Expect = 1e-20
Identities = 38/192 (19%), Positives = 75/192 (39%), Gaps = 18/192 (9%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIIL 87
+ G L K IS E+ GE+ ++G G+GK R + +I + G + +
Sbjct: 23 KRIGKK-EIL--KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTV 74
Query: 88 DGTPMS--PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVL 145
G + P + Y+ ++ + L + A S + +
Sbjct: 75 FGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERAT 131
Query: 146 ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
L + +S + R+++I L+ +P L +LDEPT LD L+ + +L
Sbjct: 132 EIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191
Query: 206 YAKRKSRAVLLT 217
++ +L++
Sbjct: 192 ASQEG-LTILVS 202
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 85.3 bits (212), Expect = 8e-19
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 20/168 (11%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---M 92
++ + L +S EVR GE+L ++G G+GK LL ++ +S +G I G P
Sbjct: 9 DVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GKGSIQFAGQPLEAW 66
Query: 93 SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
S Y++ + + V L H R + V LAL +
Sbjct: 67 SATKLALHRAYLSQQQTPPFATPVWHYLTLHQH----D----KTRTELLNDVAGALALDD 118
Query: 153 VARRNISELTPSEHRRVVI-------GTQLVKDPVLLLLDEPTVNLDP 193
R+ ++L+ E +RV + Q LLLLDEP +LD
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 166
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 84.9 bits (211), Expect = 2e-18
Identities = 56/283 (19%), Positives = 102/283 (36%), Gaps = 72/283 (25%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDGTPMSP----- 94
LK I++ ++ GEV A+LG G GK L + + G + G I+ D P+
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFN----GILKPSSGRILFDNKPIDYSRKGI 79
Query: 95 ----------------QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ---VSRY 135
QLF + V Q + + G +
Sbjct: 80 MKLRESIGIVFQDPDNQLFSAS---------------VYQDVSF------GAVNMKLPED 118
Query: 136 VRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
R+ L + ++ + L+ + +RV I LV +P +L+LDEPT LDP+
Sbjct: 119 EIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMG 178
Query: 196 TYLIVSMLSSYAKRKSRAVLLT---MEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML-- 250
I+ +L K +++ ++ V + D + G +I G + +
Sbjct: 179 VSEIMKLLVEMQKELGITIIIATHDID----IVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
Query: 251 -EYFRSIGFPCPELENPLMYYLCLSTVDRRSRERFIESNNQIV 292
E R + L P + +L +E+ +++
Sbjct: 235 KEVIRKVN-----LRLPRIGHLM-----EILKEKDGFVFDELD 267
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 83.8 bits (208), Expect = 3e-18
Identities = 46/208 (22%), Positives = 96/208 (46%), Gaps = 16/208 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+ + ++ ++ G++LAVLG G GK LL+++ +G+I + +
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-PIQGKIEVYQ----------SI 68
Query: 102 GYVNHRTDLIPSLTVEQTLYY--AAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS 159
G+V + +V + + H++ + + Q L L L+++A+R +
Sbjct: 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY-QVAMQALDYLNLTHLAKREFT 127
Query: 160 ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTME 219
L+ + + ++I + + L+LLDEPT LD + +++S+L A+ ++ V+ T
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187
Query: 220 KPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+P V+ ++T L G TR
Sbjct: 188 QPNQ-VVAIANKTLLLN-KQNFKFGETR 213
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 81.4 bits (202), Expect = 1e-17
Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 30/188 (15%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIIL 87
+V + ILK ISL V+ GE ++++G+ GSGK LL ++ G T G++ L
Sbjct: 12 KVIRGYE---ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-----GLLDAPTEGKVFL 63
Query: 88 DGTPMSP-------QLFQTTCGYVNHRTDLIPSLT----VEQTLYYAAHLSIGPQVSRYV 136
+G + L G+V LIP LT V + +
Sbjct: 64 EGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG-------KPKKE 116
Query: 137 RNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196
R +L++L L + R EL+ E +RV I L +P+LL DEPT NLD +T
Sbjct: 117 AKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANT 176
Query: 197 YLIVSMLS 204
++ +
Sbjct: 177 KRVMDIFL 184
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 80.9 bits (200), Expect = 3e-17
Identities = 46/220 (20%), Positives = 86/220 (39%), Gaps = 39/220 (17%)
Query: 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TP 91
G L++I+LEV GE + +LG GSGK LL IS G I ++G
Sbjct: 13 GKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLP--YSGNIFINGMEVRK 69
Query: 92 MSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSI------GPQVSRYVRNARIRQVL 145
+ + Y + + Y +++ ++ + ++L
Sbjct: 70 IRNYI-----RYST---------NLPE--AYEIGVTVNDIVYLYEELKG-LDRDLFLEML 112
Query: 146 ADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
L L + RR + +L+ + V L P ++ LDEP N+D ++I +
Sbjct: 113 KALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK 172
Query: 205 SYAKRKSRAVLLT--MEKPRSDVLPFLDRTAYLCLGDLIY 242
Y K +L+T ++ + + + AY +G+ +
Sbjct: 173 EYGK---EGILVTHELD----MLNLYKEYKAYFLVGNRLQ 205
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 78.0 bits (193), Expect = 4e-16
Identities = 55/258 (21%), Positives = 102/258 (39%), Gaps = 33/258 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDGTPMSPQLFQT 99
L+++SL + GE L V G+ GSGK LL++++ G T G+++ DG +
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVA----GLIEPTSGDVLYDGERKKGYEIRR 78
Query: 100 TCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQ---VSRYVRNARIRQVLADLALS--N 152
G + V + + + R +++ + + L +
Sbjct: 79 NIGIAFQYPEDQFF-AERVFDEVAF------AVKNFYPDRDPVP-LVKKAMEFVGLDFDS 130
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
R L+ E RRV I + +V +P +L+LDEP V LD ++ ++ +
Sbjct: 131 FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 190
Query: 213 AVLLT--MEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYY 270
+L++ +E V+ +DR L G ++ G E+ + +M
Sbjct: 191 VILISHDIE----TVINHVDRVVVLEKGKKVFDGTRM---EFLEKYDPRFFTSKMLVMRR 243
Query: 271 LCLSTVDR--RSRERFIE 286
L L D S + +E
Sbjct: 244 LVLKGEDPFSMSDDELLE 261
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 78.8 bits (195), Expect = 5e-16
Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 34/174 (19%)
Query: 31 QRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIIL 87
R + N L ++SL+V GE +LG G+GK LE+I +G G I+L
Sbjct: 8 SRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELI----AGFHVPDSGRILL 59
Query: 88 DGTPMS---PQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN 138
DG ++ P+ ++Q Y L P + V++ L + G ++ +
Sbjct: 60 DGKDVTDLSPEKHDIAFVYQN---YS-----LFPHMNVKKNLEF------GMRMKKIKDP 105
Query: 139 ARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R+ DL + ++ RN L+ E +RV + LV +P +LLLDEP LD
Sbjct: 106 KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 80.4 bits (199), Expect = 6e-16
Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 20/175 (11%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP-MSPQLFQTT 100
L+ E+R GEV+ ++G G GK +++++ T G++ D T PQ
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKVEWDLTVAYKPQ----- 424
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE 160
TV + L +++ N ++L L + ++ RN+ +
Sbjct: 425 ------YIKAEYEGTVYELL----SKIDSSKLNS---NFYKTELLKPLGIIDLYDRNVED 471
Query: 161 LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
L+ E +RV I L++D + LLDEP+ LD + + ++ + L
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
Score = 74.7 bits (184), Expect = 3e-14
Identities = 30/194 (15%), Positives = 70/194 (36%), Gaps = 35/194 (18%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR-----SSGTTRGEIILDGTPMSP-- 94
+ V+ G V+ ++G G+GK +++++ + + ++ +
Sbjct: 106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ 165
Query: 95 ------------QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIR 142
+ + DL+P + + + + +
Sbjct: 166 NYFERLKNGEIRPVVKP------QYVDLLPKAVKGK---------VRELLKKVDEVGKFE 210
Query: 143 QVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202
+V+ +L L NV R + +L+ E +RV I L++ DEP+ LD + +
Sbjct: 211 EVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARV 270
Query: 203 LSSYAKRKSRAVLL 216
+ + +AVL+
Sbjct: 271 I-RRLANEGKAVLV 283
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 74.5 bits (184), Expect = 3e-15
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 33/182 (18%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIILDGTPMSP--- 94
LK+++L ++ GE ++++G GSGK +L +I G T GE+ +D +
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-----GCLDKPTEGEVYIDNIKTNDLDD 74
Query: 95 ----QLFQTTCGYVNHRTDLIPSLT----VEQTLYYAAHLSIGPQVSRYVRNARIRQVLA 146
++ + G+V + +LIP LT VE L + +S R R + L
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIF----KYRGAMSGEERRKRALECLK 130
Query: 147 DLALSNVARRNISELTPSE-----HRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201
L + P++ +RV I L +P ++L D+PT LD + I+
Sbjct: 131 MAELEE----RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ 186
Query: 202 ML 203
+L
Sbjct: 187 LL 188
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 77.0 bits (190), Expect = 5e-15
Identities = 35/177 (19%), Positives = 70/177 (39%), Gaps = 22/177 (12%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS--PQ-LFQ 98
L + E + GE++ +LG G GK ++ + G + + +S PQ +F
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-ADEGSVTPEKQILSYKPQRIFP 341
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
TV+Q L A+ ++ + +V L L + N+
Sbjct: 342 N------------YDGTVQQYLENASKDALST------SSWFFEEVTKRLNLHRLLESNV 383
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
++L+ E +++ I L K+ L +LD+P+ LD Y++ + + +
Sbjct: 384 NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440
Score = 68.9 bits (169), Expect = 2e-12
Identities = 30/186 (16%), Positives = 71/186 (38%), Gaps = 27/186 (14%)
Query: 43 LKDISLEV-RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII-----LDGTPMSPQL 96
K L + +L VLG G GK +L++++ GEII + ++
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILA--------GEIIPNFGDPNSKVGKDEV 65
Query: 97 FQTTCG-----YVNH-RTDLIPSLTVEQ---TLYYAAHLSIGPQVSRYVRNARIRQVLAD 147
+ G Y ++ + + Q ++ +++ + +V
Sbjct: 66 LKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKEL 125
Query: 148 LALSNVARRNISELTPS--EHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
L ++N+ ++ + L S +R+++ L+++ + + D+P+ LD + +
Sbjct: 126 LNMTNLWNKDANIL--SGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE 183
Query: 206 YAKRKS 211
K K
Sbjct: 184 LLKNKY 189
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 76.2 bits (188), Expect = 1e-14
Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 27/188 (14%)
Query: 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRR-----SSGTTRGEIIL---DGTPMSPQ 95
V+ G V+ ++G G+GK +++++ + + ++ G +
Sbjct: 38 LYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97
Query: 96 LFQTTCGYV--NHR---TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
+ G + + DLIP + + + + ++ +V+ L L
Sbjct: 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGK---------VIELLKKADETGKLEEVVKALEL 148
Query: 151 SNVARRNISELTPS--EHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
NV R I L S E +RV I L+++ DEP+ LD +
Sbjct: 149 ENVLEREIQHL--SGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR-LS 205
Query: 209 RKSRAVLL 216
+ ++VL+
Sbjct: 206 EEGKSVLV 213
Score = 76.2 bits (188), Expect = 1e-14
Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 28/179 (15%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTP-MSPQL 96
L+ E++ GEV+ ++G G GK + L V T G+I D T PQ
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP-----TEGKIEWDLTVAYKPQ- 354
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
TV + L +++ N ++L L + ++ R
Sbjct: 355 ----------YIKADYEGTVYELL----SKIDASKLN---SNFYKTELLKPLGIIDLYDR 397
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
++EL+ E +RV I L++D + LLDEP+ LD + + ++ + L
Sbjct: 398 EVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 76.2 bits (188), Expect = 1e-14
Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 24/192 (12%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGK----RALLEVI---SRRSSGTTRGEIILDGTPMS- 93
RPG+VL ++G+ G GK + L R + I+ S
Sbjct: 92 FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSE 151
Query: 94 -----PQLFQTTCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLA 146
++ + + D IP ++ + L ++ +++ +
Sbjct: 152 LQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQKVGELL---KLRMEKSPEDVKRYIK 207
Query: 147 DLALSNVARRNISELTPS--EHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
L L NV +R+I +L S E +R IG V++ + + DEP+ LD ++
Sbjct: 208 ILQLENVLKRDIEKL--SGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIR 265
Query: 205 SYAKRKSRAVLL 216
S ++ V+
Sbjct: 266 S-LLAPTKYVIC 276
Score = 76.2 bits (188), Expect = 1e-14
Identities = 29/178 (16%), Positives = 57/178 (32%), Gaps = 26/178 (14%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPMSPQLF 97
+L E E+L ++G G+GK + L + G+ I
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-----PDEGQDIPKLNV------ 415
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
+ TV Q L +++ V+ L + ++ +
Sbjct: 416 ----SMKPQKIAPKFPGTVRQ-------LFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQE 464
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
+ L+ E +RV I L + L+DEP+ LD + ++ + +
Sbjct: 465 VQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 73.4 bits (181), Expect = 3e-14
Identities = 53/177 (29%), Positives = 73/177 (41%), Gaps = 34/177 (19%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILD 88
+ F N L DISL + PGE+L ++G+ G GK LL + +G GEI L
Sbjct: 12 KSFQN-TPVL--NDISLSLDPGEILFIIGASGCGKTTLLRCL----AGFEQPDSGEISLS 64
Query: 89 GTPMSPQL-------------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRY 135
G + + Q V L P LTV + + Y L G
Sbjct: 65 GKTIFSKNTNLPVRERRLGYLVQE---GV-----LFPHLTVYRNIAYG--LGNGK-GRTA 113
Query: 136 VRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
RI +L +S +A R EL+ + +R + L DP L+LLDEP LD
Sbjct: 114 QERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 72.3 bits (178), Expect = 8e-14
Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 27/164 (16%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMS---P 94
++ +S ++R GE++ +LG GSGK +L +I +G T+G++ + G ++ P
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLI----AGLERPTKGDVWIGGKRVTDLPP 84
Query: 95 Q------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL 148
Q +FQ Y L +TV + + L +V + +AR+R++L +
Sbjct: 85 QKRNVGLVFQN---YA-----LFQHMTVYDNVSFG--LRE-KRVPKDEMDARVRELLRFM 133
Query: 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L + A R EL+ + +RV + L P +LL DEP +D
Sbjct: 134 RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 68.8 bits (169), Expect = 4e-13
Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 19/169 (11%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
FG+++ +LK I++ +R GEV+ V+G GSGK L ++ GEII+DG +
Sbjct: 34 FGSLE---VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-FDEGEIIIDGINLK 89
Query: 94 PQL-----FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGP----QVSRYVRNARIRQV 144
+ + G V R +L P +TV ++++ P + R A+ ++
Sbjct: 90 AKDTNLNKVREEVGMVFQRFNLFPHMTVLN------NITLAPMKVRKWPREKAEAKAMEL 143
Query: 145 LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
L + L + A L+ + +RV I L +P ++L DEPT LDP
Sbjct: 144 LDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP 192
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 66.4 bits (163), Expect = 2e-12
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 30/160 (18%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDG---TPMSPQ--- 95
++ E+ + +LG G+GK LE+I+ G RGE+ L+G TP+ P+
Sbjct: 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIA----GIVKPDRGEVRLNGADITPLPPERRG 71
Query: 96 ---LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
+ Q Y L P L+V + + Y V R R+ R+R++ L +++
Sbjct: 72 IGFVPQD---YA-----LFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAH 118
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ R + L+ E +RV + LV P LLLLDEP +D
Sbjct: 119 LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 9e-12
Identities = 84/504 (16%), Positives = 142/504 (28%), Gaps = 155/504 (30%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRAL-LEVISRRSSGTTRGEIILDGTPMSP 94
++ AL LE+RP + + + G GSGK + L+V S M
Sbjct: 139 KLRQAL------LELRPAKNVLIDGVLGSGKTWVALDVC--LSYKVQCK--------MDF 182
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVR--------NARIRQVLA 146
++F N ++ L Q L Y + + A +R++L
Sbjct: 183 KIFWLNLKNCNSPETVLEML---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 147 D-------LALSNVARRNISE--------------------LTPSEHRRVVIGTQ---LV 176
L L NV L+ + + + L
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 177 KDPVLLLL---------DEP--TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDV 225
D V LL D P + +P +I + + +K
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK----- 354
Query: 226 LPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIG-FP---------------------CPEL 263
L L L + F + FP +
Sbjct: 355 ---LTTIIESSLNVL----EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 264 ENPLMYYLCLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVIMDHGNSTIPS 323
N L Y S V+++ +E I + + L K + E A +R I+DH N IP
Sbjct: 408 VNKLHKY---SLVEKQPKESTISIPSIYLELKVKLENEYALHRS-----IVDHYN--IPK 457
Query: 324 LTSHKMPLVNFSKPGGFQDYQWSF---------MSRNGLIFSSISGSY-FISTFIAAFTF 373
+ P Q Y +S +F + + F+ I +
Sbjct: 458 ----TFDSDDLIPPYLDQ-YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 374 P----------VHRTRYYQE---AQEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQA 420
+ + ++Y+ + Y + + F LP +I
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYER--LVNAILDF-LP------KIEENLI--- 560
Query: 421 TGLSTSTDLFQFSLMLWSCFLFAE 444
S TDL + +LM +F E
Sbjct: 561 --CSKYTDLLRIALMAEDEAIFEE 582
Score = 50.6 bits (120), Expect = 1e-06
Identities = 85/645 (13%), Positives = 167/645 (25%), Gaps = 197/645 (30%)
Query: 7 TGEEEY-YLKIDLQH--PALVETGSCFQRVFGNIQTALILKDISLEVRP----GEVLAVL 59
TGE +Y Y I L A V+ C KD+ + E+ ++
Sbjct: 11 TGEHQYQYKDI-LSVFEDAFVDNFDC--------------KDVQDMPKSILSKEEIDHII 55
Query: 60 GSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVN---HRTDLIPSLTV 116
SK + L + S + ++ + + ++ PS+
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEE------VLRINYKFLMSPIKTEQRQPSMMT 109
Query: 117 EQTLYYAAHLSIGPQ------VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVV 170
+ L Q VSR ++RQ L EL P + V+
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-------------LELRP--AKNVL 154
Query: 171 I-G------TQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRS 223
I G T + D + L + + + S +L M
Sbjct: 155 IDGVLGSGKTWVALD---VCLSYKVQCKMDFKIFWL-----NLKNCNSPETVLEM----- 201
Query: 224 DVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLCLSTVDRRSRER 283
L L+Y ++ + ++ L + ++ R
Sbjct: 202 -------------LQKLLY----QIDPNW-------TSRSDHSSNIKLRIHSIQAELRRL 237
Query: 284 FIESNNQIVALV----------EKFKIEGAPYRKC-------ASSVIMDHGNSTIPSLTS 326
+ LV F + C V + + T+
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNL------SCKILLTTRFKQVT----DFLSAATTT 287
Query: 327 HKMPLVNFSKPGGFQDYQWSFMSRNGL-IFSSISGSYFISTFIAAFTFPVHRTRYYQEAQ 385
H + L + + + P +E
Sbjct: 288 H-ISLD---------HHSMTLTPDEVKSLLLKYLD-------CRPQDLP-------REVL 323
Query: 386 EGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSL----------M 435
P + S+ + G A+W ++ T + + SL M
Sbjct: 324 TT---NPRRL------SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 436 LWSCFLFAE--YLSVALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMS 493
+F ++ LL ++ + V +N L + + + +
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN---------KLHKYSLVEKQPKEST 425
Query: 494 YGTQARYVGAFLSRQMFGDGRLRNMYSDKYS--NCTIPHPFGCRYTDG--ASFLSERYGH 549
+ Y+ L ++ + L D Y+ Y D S + + H
Sbjct: 426 ISIPSIYLE--LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG--H-H 480
Query: 550 -----ETGDFSFFITKYTDGASFLSERYGHET----GDFSLSDVL 585
+ F + D FL ++ H++ S+ + L
Sbjct: 481 LKNIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNTL 524
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 64.5 bits (158), Expect = 9e-12
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 43/187 (22%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGK----RAL--LEVISRRSSGTTRGEIIL 87
+G + +LK +SL+ R G+V++++GS GSGK R + LE + G II+
Sbjct: 16 YGGHE---VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-------SEGAIIV 65
Query: 88 DGTPMSPQLFQTTCGYVNHRTD----------------LIPSLTVEQTLYYAAHLSIGP- 130
+G ++ + V + L +TV + ++ P
Sbjct: 66 NGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE------NVMEAPI 119
Query: 131 ---QVSRYVRNARIRQVLADLALSNVARRNI-SELTPSEHRRVVIGTQLVKDPVLLLLDE 186
+S++ R + LA + + A+ L+ + +RV I L +P +LL DE
Sbjct: 120 QVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE 179
Query: 187 PTVNLDP 193
PT LDP
Sbjct: 180 PTSALDP 186
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 64.0 bits (157), Expect = 1e-11
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TP 91
G I +K I L+V G+++ ++G+ G+GK L I+ +G+II +G T
Sbjct: 17 GAIH---AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-AQKGKIIFNGQDITN 72
Query: 92 MSP-QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
+ + V + P LTV + L A Y R + + DL
Sbjct: 73 KPAHVINRMGIALVPEGRRIFPELTVYENLMMGA----------YNRKDK-EGIKRDLEW 121
Query: 151 SNVARRNISELTP--SEHRR-------------VVIGTQLVKDPVLLLLDEPTVNLDPL 194
I L P E + + IG L+ P LL++DEP++ L P+
Sbjct: 122 -------IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPI 173
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 64.7 bits (157), Expect = 6e-11
Identities = 34/177 (19%), Positives = 65/177 (36%), Gaps = 28/177 (15%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+L L ++ + G G GK L+ I+ +DG P +
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ---------VDGFPTQEEC---RT 497
Query: 102 GYVNHRTDLIPS-LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-RRNIS 159
YV H D S +V ++ + I+ L + ++ IS
Sbjct: 498 VYVEHDIDGTHSDTSVLDFVFESG----------VGTKEAIKDKLIEFGFTDEMIAMPIS 547
Query: 160 ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
L+ ++ + ++++ +LLLDEPT +LD ++ V+ L +Y +
Sbjct: 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVN----VAWLVNYLNTCGITSIT 600
Score = 50.0 bits (119), Expect = 2e-06
Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
Query: 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS--NVARRNISELTPSEHRRVVIGT 173
+ ++ R + I + + L L V+ I L+ + ++V+
Sbjct: 855 SKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAA 914
Query: 174 QLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+ P L++LDEPT LD S + LS K V++
Sbjct: 915 GTWQRPHLIVLDEPTNYLDRDS----LGALSKALKEFEGGVII 953
Score = 32.3 bits (73), Expect = 0.57
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR 76
+ DI+ + +AV+G G+GK L+ V++
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 62.3 bits (152), Expect = 1e-10
Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 26/175 (14%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS----PQL-- 96
L ++SL V G++ V+G+ G+GK L+ ++ T G +++DG ++ +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTEGSVLVDGQELTTLSESELTK 102
Query: 97 --------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL 148
FQ + N L+ S TV + L + R+ ++L+ +
Sbjct: 103 ARRQIGMIFQ----HFN----LLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLV 151
Query: 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
L + S L+ + +RV I L +P +LL D+ T LDP +T I+ +L
Sbjct: 152 GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 58.1 bits (141), Expect = 3e-09
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 32/167 (19%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSPQL--- 96
L ++++ + GE +LG G+GK + +I+ G + GE+ D ++
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIA----GLDVPSTGELYFDDRLVASNGKLI 76
Query: 97 -----------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVL 145
FQT + L P+LT + + + ++S+ R+ +V
Sbjct: 77 VPPEDRKIGMVFQT---WA-----LYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVA 125
Query: 146 ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L + +V EL+ ++ +RV + LVKDP LLLLDEP NLD
Sbjct: 126 KILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 53.3 bits (129), Expect = 5e-08
Identities = 41/179 (22%), Positives = 69/179 (38%), Gaps = 40/179 (22%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDG- 89
FG AL +S+ V G+V ++G GSGK L+ VI +G G + +
Sbjct: 17 FGEF-KAL--DGVSISVNKGDVTLIIGPNGSGKSTLINVI----TGFLKADEGRVYFENK 69
Query: 90 --TPMSPQL---------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN 138
T P FQ + + +TV + L ++
Sbjct: 70 DITNKEPAELYHYGIVRTFQ------TPQ--PLKEMTVLENLLIGEICPGESPLNSLFYK 121
Query: 139 ARIRQ----------VLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187
I + +L L LS++ R EL+ + + V IG L+ +P ++++DEP
Sbjct: 122 KWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 53.0 bits (128), Expect = 1e-07
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 30/174 (17%)
Query: 31 QRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIIL 87
+ FGN L +I+L+++ GE +A+LG GSGK LL I+ G T G+I
Sbjct: 10 VKKFGNFT---ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIA----GIYKPTSGKIYF 62
Query: 88 DG---TPMSPQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN 138
D T + P+ +FQ + L P +TV + + + L + R +
Sbjct: 63 DEKDVTELPPKDRNVGLVFQN---WA-----LYPHMTVYKNIAFPLELR---KAPREEID 111
Query: 139 ARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
++R+V L + + R +L+ + +RV I LVK+P +LLLDEP NLD
Sbjct: 112 KKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, binding; 1.70A {Thermus
thermophilus} PDB: 2d2f_A*
Length = 250
Score = 51.4 bits (124), Expect = 2e-07
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT-TRGEIILDG---TPMSP 94
ILK ++L V GEV A++G G+GK L ++++ T RGEI+LDG +SP
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP 74
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 51.0 bits (123), Expect = 3e-07
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT-TRGEIILDG---TPMSP 94
IL+ +SL+V PGEV A++G GSGK L ++ R T G + G +SP
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 50.6 bits (122), Expect = 1e-06
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
+L ++ V+PG ++AVLG GSGK L+ +I R RG + +D
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID-PERGRVEVDELD 406
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 49.9 bits (120), Expect = 1e-06
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 30/174 (17%)
Query: 31 QRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIIL 87
++ FG ++ + +S EV+ GE +A+LG G GK L +++ G T GEI
Sbjct: 10 KKYFGKVK---AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLA----GIYKPTSGEIYF 62
Query: 88 DG---TPMSPQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN 138
D + P+ +FQ Y L P +TV + + + ++S+
Sbjct: 63 DDVLVNDIPPKYREVGMVFQN---YA-----LYPHMTVFENIAFPLRAR---RISKDEVE 111
Query: 139 ARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R+ ++ L + N+ R ++L+ + +RV + LVK P +LL DEP NLD
Sbjct: 112 KRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 47.9 bits (115), Expect = 3e-06
Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 46/191 (24%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS-------- 93
LK I+ + G A++G GSGK + +++ R G+I + G ++
Sbjct: 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--AEGDIKIGGKNVNKYNRNSIR 92
Query: 94 ------PQ---LFQTTCGYVNHRTDLI----PSLTVEQTLYYAAHLSIGPQVSRYVRNAR 140
PQ LF T Y N I T E+ + A ++A+
Sbjct: 93 SIIGIVPQDTILFNETIKY-N-----ILYGKLDATDEE-VIKAT------------KSAQ 133
Query: 141 IRQVLADLAL---SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197
+ + L + V + + +L+ E +R+ I L+KDP +++ DE T +LD + Y
Sbjct: 134 LYDFIEALPKKWDTIVGNKGM-KLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY 192
Query: 198 LIVSMLSSYAK 208
L + K
Sbjct: 193 LFQKAVEDLRK 203
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 48.8 bits (117), Expect = 3e-06
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 30/173 (17%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILD 88
+ FGN + ++L ++ GE L +LG G GK L +I+ G T G I
Sbjct: 19 KRFGNFT---AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA----GLEEPTEGRIYFG 71
Query: 89 G---TPMSPQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNA 139
T + P+ +FQ+ Y + P +TV + + + + + + +
Sbjct: 72 DRDVTYLPPKDRNISMVFQS---YA-----VWPHMTVYENIAFPLKIK---KFPKDEIDK 120
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R+R L + + R ++L+ + +RV + +V +P +LL+DEP NLD
Sbjct: 121 RVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 47.9 bits (115), Expect = 3e-06
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 31 QRVFGNIQ-----------TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG 79
+I + +IL +I+L ++ GEV+ ++G GSGK L ++I R
Sbjct: 2 HHHHHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI- 60
Query: 80 TTRGEIILDGT 90
G++++DG
Sbjct: 61 PENGQVLIDGH 71
Score = 30.1 bits (69), Expect = 1.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 168 RVVIGTQLVKDPVLLLLDEPTVNLD 192
R+ I LV +P +L+ DE T LD
Sbjct: 153 RIAIARALVNNPKILIFDEATSALD 177
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 47.9 bits (115), Expect = 4e-06
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 24/79 (30%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKR---ALLEVISRRSSGTTRGEIILDGTPMS----- 93
+L+ ++ + PG+V A++G GSGK ALL+ T G+++LDG P+
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ----NLYQPTGGKVLLDGEPLVQYDHH 89
Query: 94 ------------PQLFQTT 100
P LF +
Sbjct: 90 YLHTQVAAVGQEPLLFGRS 108
Score = 34.8 bits (81), Expect = 0.063
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 168 RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
V + L++ P LL+LD T LD + + +L + SR VL
Sbjct: 164 AVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVL 211
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and
permease protein; asymmetric dimer, tetramer,
P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus
lactis} SCOP: c.37.1.12
Length = 243
Score = 47.1 bits (113), Expect = 5e-06
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
IL+DIS E +P ++A G G GK + ++ R T GEI +DG P
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-PTAGEITIDGQP 65
Score = 30.5 bits (70), Expect = 1.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 168 RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
R+ I +++P +L+LDE T +LD S ++
Sbjct: 147 RLAIARAFLRNPKILMLDEATASLDSESESMV 178
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 46.8 bits (112), Expect = 9e-06
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 45/191 (23%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS-------- 93
L+D+S V PG+ LA++G G+GK +L ++ R + G I +DG +S
Sbjct: 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF-RFYDISSGCIRIDGQDISQVTQASLR 127
Query: 94 ------PQ---LFQTTCGYVNHRTDLI----PSLTVEQTLYYAAHLSIGPQVSRYVRNAR 140
PQ LF T N I + ++ + AA + A
Sbjct: 128 SHIGVVPQDTVLFNDTIAD-N-----IRYGRVTAGNDE-VEAAA------------QAAG 168
Query: 141 IRQVLADLAL---SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197
I + + V R + +L+ E +RV I ++K P ++LLDE T LD +
Sbjct: 169 IHDAIMAFPEGYRTQVGERGL-KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Query: 198 LIVSMLSSYAK 208
I + L+
Sbjct: 228 AIQASLAKVCA 238
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 47.0 bits (112), Expect = 1e-05
Identities = 38/174 (21%), Positives = 60/174 (34%), Gaps = 41/174 (23%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS------- 93
IL++IS + PG+ + +LG GSGK LL R T GEI +DG
Sbjct: 35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--NTEGEIQIDGVSWDSITLEQW 92
Query: 94 ----------PQLFQTTCGY----VNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNA 139
+F T +D Q ++ A + +
Sbjct: 93 RKAFGVIPQKVFIFSGTFRKNLDPNAAHSD--------QEIWKVADEV---GLRSVIEQ- 140
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
L V L+ + + + ++ +LLLDEP+ +LDP
Sbjct: 141 ------FPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 188
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 45.4 bits (108), Expect = 2e-05
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGT 80
+LKDI+ ++ G++LAV GS G+GK +LL +I S G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 94
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 46.1 bits (110), Expect = 2e-05
Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 42/182 (23%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGK----R--ALLEVISRRSSGTTRGEI 85
+VFG + ++++SLEV+ GE + +LG G GK R A LE +RG+I
Sbjct: 11 KVFGEVT---AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-------SRGQI 60
Query: 86 ILDGTPMSPQL---------------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGP 130
+ ++ FQ+ Y L P +TV + + L
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQS---YA-----LYPHMTVYDNIAFPLKLR--- 109
Query: 131 QVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190
+V R + R+R+V L L+ + R EL+ + +RV +G +V+ P + L+DEP N
Sbjct: 110 KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 191 LD 192
LD
Sbjct: 170 LD 171
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 46.0 bits (110), Expect = 3e-05
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
L++I+L++ G+ +A++G GSGK + +I+R G I++DG
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD-IDEGHILMDGHD 406
Score = 28.3 bits (64), Expect = 9.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 175 LVKDPVLLLLDEPTVNLDPLSTYLI 199
L++D +L+LDE T LD S I
Sbjct: 495 LLRDSPILILDEATSALDTESERAI 519
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 46.0 bits (110), Expect = 3e-05
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 30 FQRV-FG-NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL 87
+ V F + L +S + G+ +A++G GSGK + + +R G I L
Sbjct: 344 VKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD-VDSGSICL 402
Query: 88 DGTP 91
DG
Sbjct: 403 DGHD 406
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 44.5 bits (106), Expect = 4e-05
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVI 73
+LKDI+ ++ G++LAV GS G+GK +LL +I
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMI 54
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 45.3 bits (108), Expect = 5e-05
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTP 91
ILKDI+L + GE +A +G G GK L+ +I R T G+I++DG
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR----FYDVTSGQILIDGHN 404
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 43.7 bits (104), Expect = 6e-05
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 22/81 (27%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGT--TRGEI----------- 85
L I+ + G ++AV+G G GK +LL + + G +G +
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQN 79
Query: 86 ------ILDGTPMSPQLFQTT 100
IL G + +++
Sbjct: 80 DSLRENILFGCQLEEPYYRSV 100
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 43.7 bits (104), Expect = 1e-04
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGK---RALLEVISRRSSGTTRGEIILDGTP 91
I +D SL + G V A++G GSGK +LL R G I LDG
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL----RLYDPASGTISLDGHD 407
Score = 30.6 bits (70), Expect = 1.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 168 RVVIGTQLVKDPVLLLLDEPTVNLD 192
R+ I L+K+P +LLLDE T LD
Sbjct: 491 RIAIARALLKNPKILLLDEATSALD 515
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 42.9 bits (102), Expect = 2e-04
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 30/171 (17%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGT 90
+G + + KDI+L++ GE + +G G GK LL +I +G T G++ +
Sbjct: 13 WGEVV---VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMI----AGLETITSGDLFIGEK 65
Query: 91 PM---SPQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARI 141
M P +FQ+ Y L P L+V + + + L+ + V N R+
Sbjct: 66 RMNDTPPAERGVGMVFQS---YA-----LYPHLSVAENMSFGLKLA---GAKKEVINQRV 114
Query: 142 RQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
QV L L+++ R L+ + +RV IG LV +P + LLDEP NLD
Sbjct: 115 NQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 43.1 bits (102), Expect = 3e-04
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 36/108 (33%)
Query: 25 ETGSCFQRVFGNIQ------------TALILKDISLEVRPGEVLAVLGSKGSGK---RAL 69
++G + GN++ ILK ++L+V+ G+ +A++G+ G GK L
Sbjct: 376 KSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQL 435
Query: 70 LEVISRRSSGTTRGEIILDGTPMS-----------------PQLFQTT 100
++ R G + +DG + P LF TT
Sbjct: 436 MQ----RLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATT 479
Score = 41.6 bits (98), Expect = 8e-04
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 36/108 (33%)
Query: 25 ETGSCFQRVFGNIQ------------TALILKDISLEVRPGEVLAVLGSKGSGKR---AL 69
G + GN+Q + +L+ +SLEV+ G+ LA++GS G GK L
Sbjct: 1019 TQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQL 1078
Query: 70 LEVISRRSSGTTRGEIILDGTPMS-----------------PQLFQTT 100
LE R G + LDG + P LF +
Sbjct: 1079 LE----RFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCS 1122
Score = 33.9 bits (78), Expect = 0.17
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 168 RVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
R+ I LV+ P +LLLDE T LD S
Sbjct: 1179 RIAIARALVRQPHILLLDEATSALDTES 1206
Score = 33.1 bits (76), Expect = 0.34
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 168 RVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
R+ I LV++P +LLLDE T LD S
Sbjct: 534 RIAIARALVRNPKILLLDEATSALDTES 561
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 0.001
Identities = 57/422 (13%), Positives = 112/422 (26%), Gaps = 147/422 (34%)
Query: 161 LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL----DPLSTYLIVSMLSSYAKRKSRAVLL 216
L P+ I +QL ++ +L EPT +P + ++ + S V
Sbjct: 21 LVPTAS--FFIASQL-QEQFNKILPEPTEGFAADDEPTT---PAELVGKFLGYVSSLVEP 74
Query: 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLC---- 272
+ VL L L F + YL
Sbjct: 75 SKVGQFDQVL--------------------NLCLTEFENC-------------YLEGNDI 101
Query: 273 ---LSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVIMDH---GNSTIPSLTS 326
+ + + + +++ I + + P+ K ++S + GN+ + ++
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-- 159
Query: 327 HKMPLVNFSKPGGFQ----DYQWSFMSRNGLIFS---SISGSY--FISTFI--AAFTF-- 373
F GG Q DY F + +Y + I +A T
Sbjct: 160 -------F---GG-QGNTDDY-----------FEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 374 ----PVHRTRYYQEAQEGL----------YSGPLFILTYIFFSLPFSILSVGAASWIIF- 418
+ + + + GL + L I S P + + A +++
Sbjct: 198 LIRTTLDAEKVFTQ---GLNILEWLENPSNTPDKDYLLSIPISCPLIGV-IQLAHYVVTA 253
Query: 419 QATGLSTSTDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYINIIFLVLGSG- 477
+ G + YL + TA ++ +
Sbjct: 254 KLLGFTPGE--------------LRSYLK-GATGHSQGLVTAVAIAE----------TDS 288
Query: 478 ---YLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGRLRNMYSDKYSNCTIPHP-FG 533
+ S R L ++ Y L + D +N +P P
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED--------SLENNEGVPSPMLS 340
Query: 534 CR 535
Sbjct: 341 IS 342
Score = 40.8 bits (95), Expect = 0.001
Identities = 41/259 (15%), Positives = 72/259 (27%), Gaps = 93/259 (35%)
Query: 404 PFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFL---------FA---EYLSVALL 451
P LS G+ L T F + L F FA E + A L
Sbjct: 8 PL-TLSHGSLE------HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 452 LVVESGFTAAVV-----SSYINIIFLVLG---SGYLR-----------------SFRSMA 486
+ G+ +++V + ++ L L + YL +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 487 EWLVYMSYGTQARYVG----------AFLSRQ---------MFGDGR---------LRNM 518
E + +Y AR + A +FG G+ LR++
Sbjct: 121 ELIK--NY-ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-GQGNTDDYFEELRDL 176
Query: 519 YSDKYSNCTIPHPFGCRYTDGASFLSERYGHETGDFSFFITKYTDGASFLSERYGHETGD 578
Y Y H ++ T D T+ + +L
Sbjct: 177 Y-QTY------HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP------- 222
Query: 579 FSLSDVLDSNFNMTITLSF 597
S+ D ++ ++I +S
Sbjct: 223 ---SNTPDKDYLLSIPISC 238
Score = 40.4 bits (94), Expect = 0.002
Identities = 66/403 (16%), Positives = 128/403 (31%), Gaps = 131/403 (32%)
Query: 8 GEEEYYLKIDLQHPALVETGSCFQRVFGNIQT-ALILKDISLEVRPGEVLAVLGSKGSGK 66
G + Y + +L+ L +T I+ A L ++ E + ++G
Sbjct: 164 GNTDDYFE-ELRD--LYQTYHVLVGDL--IKFSAETLSELIRTTLDAEKVF---TQG--- 212
Query: 67 RALLEVIS-RRSSGTTRGEIILDGTPMS-P-----QL--FQTTC---------------G 102
L ++ + T + L P+S P QL + T G
Sbjct: 213 ---LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 103 YVNHRTDLIPSLTV-----EQTLYYAAHLS------IGPQVSRYVRNARIR-QVLAD--- 147
H L+ ++ + ++ + + + IG + N + +L D
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 148 ---------LALSNVARRNISEL-------TPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191
L++SN+ + + + P ++V I LV L++ P +L
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP-AGKQVEIS--LVNGAKNLVVSGPPQSL 386
Query: 192 DPLSTYLIVSMLSSYAKRKSRA--------VLLTMEKPRSDV------LPF----LDRTA 233
L+ L RK++A + + K + PF L +
Sbjct: 387 YGLNLTL----------RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 234 YLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLCLSTVD----RRSRERFIESNN 289
L DL+ ++ F +++ P+ Y T D R E
Sbjct: 437 DLINKDLV-----------KNNVSFNAKDIQIPV-Y----DTFDGSDLRVLSGSISER-- 478
Query: 290 QIVALVEKFKI--EGAPYRKCASSVIMDHG---NSTIPSLTSH 327
IV + + + E + ++ I+D G S + LT
Sbjct: 479 -IVDCIIRLPVKWETTT--QFKATHILDFGPGGASGLGVLTHR 518
Score = 37.3 bits (86), Expect = 0.017
Identities = 44/241 (18%), Positives = 79/241 (32%), Gaps = 78/241 (32%)
Query: 322 PSLTSHKMPLVNFSKPGGFQDYQWSFMSRNGLIFSSISGSYFISTFIAAFTFP---VHRT 378
+LT H F G + + ++ + +IF +I + I F H T
Sbjct: 1670 VNLTIH------FGGEKGKRIRE-NYSA---MIFETIVDGKLKTEKI----FKEINEHST 1715
Query: 379 RYYQEAQEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWS 438
Y +++GL L T F+ P ++ + A++ ++ GL +
Sbjct: 1716 SYTFRSEKGL----LS-ATQ--FTQP-ALTLMEKAAFEDLKSKGLIPADA---------- 1757
Query: 439 CFLFA-----EYLSVALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMS 493
FA EY AL A++ + + S S+ E +V+
Sbjct: 1758 --TFAGHSLGEY--AAL---------ASL-------------ADVM-SIESLVE-VVF-- 1787
Query: 494 YGTQARYVGAFLSRQMFGDGRLRNMYSDKYSNCTIPHPFGCRYTDGASFLSERYGHETGD 553
R G + + D R+ Y N + + ++ ER G TG
Sbjct: 1788 ----YR--GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ--EALQYVVERVGKRTGW 1839
Query: 554 F 554
Sbjct: 1840 L 1840
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 39.8 bits (94), Expect = 0.002
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 8/66 (12%)
Query: 30 FQRV-FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEI 85
F+ V F + +LKDI+ ++PG+ +A++G GSGK ++ ++ R RG+I
Sbjct: 357 FKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMR----FYDVDRGQI 412
Query: 86 ILDGTP 91
++DG
Sbjct: 413 LVDGID 418
>1ha8_A Pheromone, ER-23; NMR {Euplotes raikovi} SCOP: g.58.1.1
Length = 51
Score = 30.0 bits (67), Expect = 0.20
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 524 SNCTIPHPFGCRYTDGASFLSERYG 548
+NC +P GC +D +FLS+ YG
Sbjct: 25 ANCLAGYPAGCSNSDCTAFLSQCYG 49
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A;
dynamin-like protein 1A, GTPase, membrane fission,
motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB:
3t35_A*
Length = 360
Score = 29.8 bits (67), Expect = 2.4
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 31 QRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR-----RSSGT-TRGE 84
QR + + +AV+G + SGK ++LE I R SG TR
Sbjct: 12 QRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71
Query: 85 IIL 87
++L
Sbjct: 72 LVL 74
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_B*
Length = 770
Score = 30.2 bits (67), Expect = 2.7
Identities = 10/57 (17%), Positives = 13/57 (22%), Gaps = 3/57 (5%)
Query: 313 IMDHGNSTIPSLTSHKMPLVNFSKPGGFQDYQWSFMSRNG---LIFSSISGSYFIST 366
S P NF KP + Y W F + +Y
Sbjct: 223 FYSSLISYEEDQRQGAEPRKNFVKPNETKTYFWKVQHHMAPTKDEFDCKAWAYSSDV 279
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 28.9 bits (65), Expect = 2.8
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR-RNISELTPSEHRRVVIG 172
E A + R + L + + R ++ L+ E + +
Sbjct: 13 KIGELASEIFAEF---TEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLA 69
Query: 173 TQL------VKDPVLLLLDEPTVNLDP 193
+L + LL+LDEPT LD
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDE 96
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 29.6 bits (66), Expect = 3.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 168 RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
R+ + L + LL+LDEPT LD +++++ Y K+
Sbjct: 262 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 303
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA
dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A
{Podospora anserina}
Length = 438
Score = 28.0 bits (63), Expect = 9.0
Identities = 6/47 (12%), Positives = 12/47 (25%), Gaps = 14/47 (29%)
Query: 132 VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKD 178
S + A + I + RR + ++K
Sbjct: 385 FSDLLNTAVVLP--------------IFDGGNVGIRRRHLQQLMLKP 417
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA
dehydrogenase, flavoprotein, isovaleric acidemia; HET:
FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 394
Score = 28.3 bits (64), Expect = 9.0
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 15/47 (31%)
Query: 132 VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKD 178
+ R++R+A++ + I T SE RR+VIG D
Sbjct: 361 MGRFLRDAKLYE--------------IGAGT-SEVRRLVIGRAFNAD 392
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 28.0 bits (63), Expect = 9.6
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 12/68 (17%)
Query: 276 VDRRSRERFIESNNQIVALVEKFKIEGAP------YRKCASSVIMDHGNSTIPSLTSHKM 329
+D ++ E+ QI V+ E AP + + V++ IP
Sbjct: 145 IDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP------T 198
Query: 330 PLVNFSKP 337
P +
Sbjct: 199 PKRDPDAT 206
>3ddc_B RAS association domain-containing family protein; oncogene,
tumorsuppressor, ubiquitin fold, RAS effector, RAP
rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A
{Mus musculus}
Length = 163
Score = 27.4 bits (60), Expect = 9.6
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 291 IVALVEKFKIEGAPYRKCASSVIMDHGNSTIPSLTSHKMPLV 332
I L++KF + P + I G L+ PL
Sbjct: 103 IQGLLDKFMVVDNPQKFALFKRIHKDGQVLFQKLSIADYPLY 144
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis,
TIM-barrel, His biosynthesis, tryptophan biosynthesis;
HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A
2y85_A*
Length = 244
Score = 27.9 bits (63), Expect = 9.8
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 167 RRVVIGTQLVKDPVLL 182
RV +GT +++P
Sbjct: 98 ARVNVGTAALENPQWC 113
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.408
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,180,043
Number of extensions: 554477
Number of successful extensions: 1494
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1444
Number of HSP's successfully gapped: 99
Length of query: 606
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 507
Effective length of database: 3,937,614
Effective search space: 1996370298
Effective search space used: 1996370298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (26.8 bits)