RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10223
(606 letters)
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 115 bits (288), Expect = 1e-29
Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 11/224 (4%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG--TP 91
G + ILK IS E+ GE+ ++G G+GK L +IS + G + + G
Sbjct: 12 IGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-PSSGIVTVFGKNVV 67
Query: 92 MSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
P + Y+ ++ + L + A S + + L
Sbjct: 68 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLG 124
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
+ +S + R+++I L+ +P L +LDEPT LD L+ + +L ++
Sbjct: 125 EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGL 184
Query: 212 RAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRS 255
++ + +V DR A + G ++ G + E +++
Sbjct: 185 TILVSSHN--MLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 226
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 110 bits (277), Expect = 4e-28
Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 9/217 (4%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
+ FGN + ++L ++ GE L +LG G GK L +I+ T G I
Sbjct: 14 KRFGNFT---AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-PTEGRIYFGDRD 69
Query: 92 MSPQLFQTTC-GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
++ + V + P +TV + + + + + + + R+R L +
Sbjct: 70 VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQI 126
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
+ R ++L+ + +RV + +V +P +LL+DEP NLD + + + ++
Sbjct: 127 EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 186
Query: 211 SRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+ + + DR A + G L+ G
Sbjct: 187 KVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPT 222
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 110 bits (276), Expect = 4e-28
Identities = 51/225 (22%), Positives = 99/225 (44%), Gaps = 12/225 (5%)
Query: 32 RVFGNIQTAL-ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT 90
+ + + + LK+++L ++ GE ++++G GSGK +L +I T GE+ +D
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-PTEGEVYIDNI 67
Query: 91 PMS-------PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ 143
+ ++ + G+V + +LIP LT + + +S R R +
Sbjct: 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE 127
Query: 144 VLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202
L L A ++L+ + +RV I L +P ++L D+PT LD + I+ +
Sbjct: 128 CLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187
Query: 203 LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
L + + V++ +V F +R YL G++ R
Sbjct: 188 LKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKDGEVEREEKLR 230
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 109 bits (275), Expect = 1e-27
Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 25/235 (10%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
+G + +LK +SL+ R G+V++++GS GSGK L I+ + G II++G ++
Sbjct: 12 YGGHE---VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-PSEGAIIVNGQNIN 67
Query: 94 ----------------PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVR 137
+L +T V +L +TV + + A +G +S++
Sbjct: 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG--LSKHDA 125
Query: 138 NARIRQVLADLALSNVAR-RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196
R + LA + + A+ + L+ + +RV I L +P +LL DEPT LDP
Sbjct: 126 RERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 185
Query: 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
++ ++ A+ V++T E +L G + G +
Sbjct: 186 GEVLRIMQQLAEEGKTMVVVTHE--MGFARHVSSHVIFLHQGKIEEEGDPEQVFG 238
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 105 bits (263), Expect = 3e-26
Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 12/227 (5%)
Query: 32 RVFGNIQTAL-ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT 90
+VF + L ++SL V G++ V+G+ G+GK L+ ++ T G +++DG
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTEGSVLVDGQ 67
Query: 91 PMS------PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV 144
++ + G + +L+ S TV + L + R+ ++
Sbjct: 68 ELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTEL 124
Query: 145 LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
L+ + L + S L+ + +RV I L +P +LL DE T LDP +T I+ +L
Sbjct: 125 LSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLK 184
Query: 205 SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
+R +LL + V D A + G+LI +
Sbjct: 185 DINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVFS 230
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 103 bits (259), Expect = 4e-26
Identities = 43/194 (22%), Positives = 85/194 (43%), Gaps = 14/194 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+L+ I++ + G V+ G G GK LL+ IS +GEII +G P++ +
Sbjct: 16 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-PLKGEIIYNGVPITK--VKGKI 72
Query: 102 GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISEL 161
++ + ++VE L A L V I L + + ++ ++ + EL
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASLYGVK-----VNKNEIMDALESVEVLDLKKK-LGEL 126
Query: 162 TPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221
+ RRV + + L+ + + +LD+P V +D S + ++ + K K ++ +
Sbjct: 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS---- 182
Query: 222 RSDVLPFLDRTAYL 235
+ L + D L
Sbjct: 183 -REELSYCDVNENL 195
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 104 bits (260), Expect = 9e-26
Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 20/228 (8%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
FG + L +S+ V G+V ++G GSGK L+ VI+ G + + ++
Sbjct: 14 FGEFK---ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-ADEGRVYFENKDIT 69
Query: 94 P----QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYV----------RNA 139
+L+ + +TV + L ++
Sbjct: 70 NKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE 129
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
+ ++L L LS++ R EL+ + + V IG L+ +P ++++DEP + P + I
Sbjct: 130 KAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 189
Query: 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+ + + +++ VL ++D + G +I G
Sbjct: 190 FNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEGRGE 235
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 101 bits (252), Expect = 8e-25
Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 22/226 (9%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---M 92
++ + L +S EVR GE+L ++G G+GK LL ++ +S +G I G P
Sbjct: 8 DVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GKGSIQFAGQPLEAW 65
Query: 93 SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
S Y++ + + V L H R + V LAL +
Sbjct: 66 SATKLALHRAYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDD 117
Query: 153 VARRNISELTPSEHRRVVIGTQLVK-------DPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
R+ ++L+ E +RV + +++ LLLLDEP +LD + +LS+
Sbjct: 118 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 177
Query: 206 YAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
++ A++++ + L R L G ++ +G +L
Sbjct: 178 LCQQG-LAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEVLT 221
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 96.4 bits (240), Expect = 6e-23
Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 11/215 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLFQ 98
ILKDI+L + GE +A +G G GK L+ +I R T G+I++DG +
Sbjct: 33 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD-VTSGQILIDGHNIKDFLTGSLR 91
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA--LSNVARR 156
G V ++ S TV++ + + +V + A + +L
Sbjct: 92 NQIGLVQQDN-ILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE 150
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+L+ + +R+ I + +P +L+LDE T LD S +I L +K ++ +++
Sbjct: 151 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRT-TLIV 209
Query: 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
R + D+ + G ++ G R ++
Sbjct: 210 A---HRLSTITHADKIVVIENGHIVETGTHRELIA 241
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 95.0 bits (236), Expect = 1e-22
Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 9/221 (4%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
+ +G + + KDI+L++ GE + +G G GK LL +I+ + T G++ +
Sbjct: 8 KAWGEVV---VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-ITSGDLFIGEKR 63
Query: 92 MS-PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
M+ + G V L P L+V + + + L+ + V N R+ QV L L
Sbjct: 64 MNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQL 120
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
+++ R L+ + +RV IG LV +P + LLDEP NLD + +S KR
Sbjct: 121 AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180
Query: 211 SRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
R ++ + + D+ L G + G +
Sbjct: 181 GRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 220
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 93.4 bits (232), Expect = 5e-22
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 8/223 (3%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP-- 91
+ N L+L+ ++ +RPGEV A++G GSGK + ++ T G+++LDG P
Sbjct: 21 YPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ-PTGGQLLLDGKPLP 79
Query: 92 -MSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
+ V + E Y +++ + ++ L
Sbjct: 80 QYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQ 139
Query: 151 SN--VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
S+L+ + + V + L++ P +L+LD+ T LD S + +L +
Sbjct: 140 GYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPE 199
Query: 209 RKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
R SR+VLL + ++ D +L G + G + ++E
Sbjct: 200 RYSRSVLLITQ--HLSLVEQADHILFLEGGAIREGGTHQQLME 240
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 92.7 bits (230), Expect = 8e-22
Identities = 41/218 (18%), Positives = 83/218 (38%), Gaps = 13/218 (5%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIILDGT 90
+G I +K I L+V G+++ ++G+ G+GK L I+ R G
Sbjct: 16 YGAIH---AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITN 72
Query: 91 PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA- 149
+ + + V + P LTV + L A+ + + + + +
Sbjct: 73 KPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN----RKDKEGIKRDLEWIFSLFPR 128
Query: 150 LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
L ++ L+ E + + IG L+ P LL++DEP++ L P+ + ++ +
Sbjct: 129 LKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE 188
Query: 210 KSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+ +L+ L L G ++ G
Sbjct: 189 GTTILLVEQNA--LGALKVAHYGYVLETGQIVLEGKAS 224
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 92.3 bits (229), Expect = 9e-22
Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 15/227 (6%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
+VFG + ++++SLEV+ GE + +LG G GK L +I+ +RG+I +
Sbjct: 11 KVFGEVT---AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-PSRGQIYIGDKL 66
Query: 92 MSP-------QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV 144
++ V L P +TV + + L +V R + R+R+V
Sbjct: 67 VADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREV 123
Query: 145 LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
L L+ + R EL+ + +RV +G +V+ P + L+DEP NLD + + L
Sbjct: 124 AELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELK 183
Query: 205 SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
++ + + + DR A + G L G + +
Sbjct: 184 KLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 92.2 bits (229), Expect = 1e-21
Identities = 45/215 (20%), Positives = 86/215 (40%), Gaps = 10/215 (4%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQLFQ 98
L++I+L++ G+ +A++G GSGK + +I+R G I++DG + +
Sbjct: 30 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD-IDEGHILMDGHDLREYTLASLR 88
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL--ALSNVARR 156
V+ L Y Q+ R A + + L +
Sbjct: 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGE 148
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
N L+ + +R+ I L++D +L+LDE T LD S I + L K ++ ++++
Sbjct: 149 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRT-SLVI 207
Query: 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
R + D + G ++ G +L
Sbjct: 208 A---HRLSTIEQADEIVVVEDGIIVERGTHSELLA 239
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 88.8 bits (220), Expect = 3e-20
Identities = 44/206 (21%), Positives = 83/206 (40%), Gaps = 18/206 (8%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+LK+I+L + GE+LA+ GS GSGK +LL +I + G I G
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE-ASEGIIKHSG----------RV 99
Query: 102 GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA--LSNVARRNIS 159
+ + + ++P T+++ + + + V+ +++Q + A + V
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD-EYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 157
Query: 160 ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTME 219
L+ + R+ + + KD L LLD P LD + + +L+T
Sbjct: 158 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS- 216
Query: 220 KPRSDVLPFLDRTAYLCLGDLIYAGP 245
+ + L D+ L G + G
Sbjct: 217 --KMEHLRKADKILILHQGSSYFYGT 240
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 85.1 bits (210), Expect = 3e-19
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 11/212 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS------PQ 95
L ++++ + GE +LG G+GK + +I+ + GE+ D ++
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-PSTGELYFDDRLVASNGKLIVP 78
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
G V L P+LT + + + ++S+ R+ +V L + +V
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLN 135
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
EL+ ++ +RV + LVKDP LLLLDEP NLD +++ R +L
Sbjct: 136 HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLL 195
Query: 216 LTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+ P +D+ DR L G L+ G
Sbjct: 196 VVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 84.9 bits (210), Expect = 3e-19
Identities = 44/215 (20%), Positives = 95/215 (44%), Gaps = 10/215 (4%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSPQLFQ 98
IL+DIS E +P ++A G G GK + ++ R T GEI +DG +S + ++
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-PTAGEITIDGQPIDNISLENWR 75
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR--R 156
+ G+V+ + ++ E Y + + + A R + ++
Sbjct: 76 SQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE 135
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+++ + +R+ I +++P +L+LDE T +LD S ++ L S K ++ +++
Sbjct: 136 RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRT-TLVI 194
Query: 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
R + D+ ++ G + +G ++
Sbjct: 195 A---HRLSTIVDADKIYFIEKGQITGSGKHNELVA 226
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 84.3 bits (208), Expect = 5e-19
Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 13/219 (5%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
+ N L ++SL+V GE +LG G+GK LE+I+ + I+LDG ++
Sbjct: 11 WKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG-RILLDGKDVT 65
Query: 94 -PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
+ +V L P + V++ L + + + R+ DL + +
Sbjct: 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM------KKIKDPKRVLDTARDLKIEH 119
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
+ RN L+ E +RV + LV +P +LLLDEP LDP + MLS K+
Sbjct: 120 LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179
Query: 213 AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
VL + DR A + G LI G + E
Sbjct: 180 TVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIFE 217
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 84.2 bits (208), Expect = 7e-19
Identities = 47/215 (21%), Positives = 93/215 (43%), Gaps = 11/215 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLFQ 98
IL +I+L ++ GEV+ ++G GSGK L ++I R G++++DG P +
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPNWLR 76
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
G V L + ++ + A +V + A +++L
Sbjct: 77 RQVGVVLQDNVL-LNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 135
Query: 159 --SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+ L+ + +R+ I LV +P +L+ DE T LD S ++I+ + K ++ +++
Sbjct: 136 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRT-VIII 194
Query: 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
R + DR + G ++ G + +L
Sbjct: 195 A---HRLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 70.8 bits (173), Expect = 2e-14
Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 14/219 (6%)
Query: 30 FQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG 89
++ GN + ++ E+ + +LG G+GK LE+I+ RGE+ L+G
Sbjct: 7 AEKRLGNFRL-----NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVK-PDRGEVRLNG 59
Query: 90 TPMSPQ-LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL 148
++P + G+V L P L+V + + Y V R R+ R+R++ L
Sbjct: 60 ADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKL 114
Query: 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
++++ R + L+ E +RV + LV P LLLLDEP +D + +++ L +
Sbjct: 115 GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174
Query: 209 RKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+L + D A + G ++ G +
Sbjct: 175 EFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLK 212
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 41.0 bits (94), Expect = 3e-04
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 164 SEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
R+ + L + LL+LDEPT LD +++++ Y K+ + +L++
Sbjct: 288 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 341
Score = 27.5 bits (59), Expect = 5.4
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII 86
D +E + G + ++G GSGK +LL+ I R + I
Sbjct: 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYWPLRIKDI 56
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 37.0 bits (84), Expect = 0.005
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 171 IGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
+ L + LL+LDEPT LD +++++ Y K+ + +L++
Sbjct: 218 MSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 264
Score = 36.7 bits (83), Expect = 0.007
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
D +E + G ++G GSGK +LL+ I R + I T
Sbjct: 14 HSDTVVEFKEGIN-LIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYID 72
Query: 103 YVNH 106
+
Sbjct: 73 LIFE 76
>d1ha8a_ g.58.1.1 (A:) Pheromone ER-23 {Euplotes raikovi [TaxId:
5938]}
Length = 51
Score = 30.0 bits (67), Expect = 0.073
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 524 SNCTIPHPFGCRYTDGASFLSERYG 548
+NC +P GC +D +FLS+ YG
Sbjct: 25 ANCLAGYPAGCSNSDCTAFLSQCYG 49
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 31.6 bits (70), Expect = 0.26
Identities = 6/48 (12%), Positives = 18/48 (37%)
Query: 170 VIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
+ + +LDE LD + I + + + + ++++
Sbjct: 346 LFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVIS 393
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate
uridylyltransferase {Escherichia coli [TaxId: 562]}
Length = 176
Score = 29.3 bits (65), Expect = 0.84
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 185 DEPTVNLDPLS-TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240
D P +PL+ +++VS R R E P VLP D +LC G++
Sbjct: 7 DHPHRRYNPLTGQWILVS-----PHRAKRPWQGAQETPAKQVLPAHDPDCFLCAGNV 58
>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase
{Escherichia coli [TaxId: 562]}
Length = 120
Score = 28.4 bits (62), Expect = 0.93
Identities = 13/83 (15%), Positives = 25/83 (30%)
Query: 276 VDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVIMDHGNSTIPSLTSHKMPLVNFS 335
+D R RF ++ + + I GA V +T V++
Sbjct: 23 IDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSYD 82
Query: 336 KPGGFQDYQWSFMSRNGLIFSSI 358
KP + L +++
Sbjct: 83 KPIIVSCGSGVTAAVVLLALATL 105
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 27.9 bits (61), Expect = 2.3
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 55 VLAVLGSKGSGKRALLEVISRR 76
V V+G K SGK L+E
Sbjct: 3 VWQVVGYKHSGKTTLMEKWVAA 24
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 27.9 bits (61), Expect = 3.3
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 56 LAVLGSKGSGKRALLEVIS------RRSSGTTRGEIIL 87
+ V+GS+ SGK ++LE I R S TR +IL
Sbjct: 27 IVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLIL 64
>d1j5sa_ c.1.9.8 (A:) Uronate isomerase TM0064 {Thermotoga maritima
[TaxId: 2336]}
Length = 451
Score = 26.8 bits (59), Expect = 7.5
Identities = 8/36 (22%), Positives = 10/36 (27%)
Query: 550 ETGDFSFFITKYTDGASFLSERYGHETGDFSLSDVL 585
TD LS E LS+V+
Sbjct: 385 SVDLLYNLAGMVTDSRKLLSFGSRTEMFRRVLSNVV 420
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 27.0 bits (58), Expect = 7.5
Identities = 28/269 (10%), Positives = 68/269 (25%), Gaps = 23/269 (8%)
Query: 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHR 107
L+ + VLG + +GK +++++ + + + ++ +
Sbjct: 24 LKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKE 83
Query: 108 TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHR 167
+ + I + N + L+ L + +
Sbjct: 84 INKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLD 143
Query: 168 RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLP 227
+L +L L NL + + S + +
Sbjct: 144 EAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRV--------EDPESPL 195
Query: 228 FLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELE--------NPLMY-YLCLSTVDR 278
F + + L + F+ + E P Y +D
Sbjct: 196 FGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGGIPGWLTYFGFIYLDN 255
Query: 279 RSRERFI-----ESNNQIVALVEKFKIEG 302
++ + I + I+ E F + G
Sbjct: 256 KNLDFAINQTLEYAKKLILKEFENF-LHG 283
>d1g9ga_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F)
{Clostridium cellulolyticum [TaxId: 1521]}
Length = 629
Score = 27.1 bits (60), Expect = 7.9
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 10/36 (27%)
Query: 547 YGHETGD--FSFFITKYTDGASFLSERYGHETGDFS 580
YGH T S+++ +L +G +GDF+
Sbjct: 48 YGHVTTSEAMSYYM--------WLEAMHGRFSGDFT 75
>d2vgba3 c.49.1.1 (A:440-573) Pyruvate kinase, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 26.1 bits (57), Expect = 7.9
Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 443 AEYLSVALLLVV-ESGFTAAVVSSYINIIFLVLGSGYLRSFRSMA-EWLVYMSY 494
A A ++V+ +G +A ++S Y ++ + ++ R + V+
Sbjct: 24 AFKCCAAAIIVLTTTGRSAQLLSRYRPRAAVIAVTRSAQAARQVHLCRGVFPLL 77
>d1l1ya_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F)
{Clostridium thermocellum [TaxId: 1515]}
Length = 642
Score = 27.1 bits (60), Expect = 7.9
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 10/36 (27%)
Query: 547 YGHETGD--FSFFITKYTDGASFLSERYGHETGDFS 580
YGH T FS+++ +L YG+ TG++S
Sbjct: 53 YGHVTTSEAFSYYV--------WLEAMYGNLTGNWS 80
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 26.4 bits (57), Expect = 9.7
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 56 LAVLGSKGSGKRALLEVIS------RRSSGTTRGEIIL 87
+AV+G + +GK ++LE R S TR ++L
Sbjct: 29 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVL 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.408
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,196,257
Number of extensions: 102124
Number of successful extensions: 423
Number of sequences better than 10.0: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 40
Length of query: 606
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 515
Effective length of database: 1,158,166
Effective search space: 596455490
Effective search space used: 596455490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.3 bits)