BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10225
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 137 bits (344), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 60/80 (75%), Positives = 70/80 (87%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
+ RALFDYDP +DDGLPSRGLPF +GDILHVTNASDDEWWQARRVL +++ IGIVPSK
Sbjct: 7 YVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSK 66
Query: 79 KRWERKQRARDRTVKFQGHV 98
+RWERK RARDR+VK + +V
Sbjct: 67 RRWERKMRARDRSVKSEENV 86
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 74/99 (74%), Gaps = 4/99 (4%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
+ RALFDYD TKD GLPS+GL F +GDILHV NASDDEWWQAR+V P G+ +G++PSK
Sbjct: 13 YVRALFDYDKTKDSGLPSQGLNFKFGDILHVINASDDEWWQARQVTPDGESDEVGVIPSK 72
Query: 79 KRWERKQRARDRTVKFQGHV----PVLLEKVSITQFSMI 113
+R E+K+RAR +TVKF V PV ++V+ T+ +I
Sbjct: 73 RRVEKKERARLKTVKFNSKVLSYEPVNQQEVNYTRPVII 111
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 8/107 (7%)
Query: 14 THLFS--FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG 71
+H+ S + RALFDYD TKD G S+ L F +GD+LHV +A D+EWWQARRV +
Sbjct: 2 SHMASGFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDD 61
Query: 72 IGIVPSKKRWERKQRARDRTVKF------QGHVPVLLEKVSITQFSM 112
IG +PSK+R ER++ +R + + QG +L ++TQ +
Sbjct: 62 IGFIPSKRRVERREWSRLKAKDWGSSSGSQGREDSVLSYETVTQMEV 108
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 60/98 (61%), Gaps = 6/98 (6%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKR 80
RALFDYD TKD G S+ L F +GD+LHV +A D+EWWQARRV + IG +PSK+R
Sbjct: 5 RALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRR 64
Query: 81 WERKQRARDRTVKF------QGHVPVLLEKVSITQFSM 112
ER++ +R + + QG +L ++TQ +
Sbjct: 65 VERREWSRLKAKDWGSSSGSQGREDSVLSYETVTQMEV 102
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 62/100 (62%), Gaps = 6/100 (6%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
+ RALFDYD TKD G S+ L F +GD+LHV +A D+EWWQARRV + IG +PSK
Sbjct: 429 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSK 488
Query: 79 KRWERKQ----RARD--RTVKFQGHVPVLLEKVSITQFSM 112
+R ER++ +A+D + QG +L ++TQ +
Sbjct: 489 RRVERREWSRLKAKDWGSSSGSQGREDSVLSYETVTQMEV 528
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 40.8 bits (94), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 18 SFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA 60
++ +ALFD+DP +D L F GD +HV + SD WW+
Sbjct: 3 TYVQALFDFDPQEDGELG-----FRRGDFIHVMDNSDPNWWKG 40
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 40.8 bits (94), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 18 SFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA 60
++ +ALFD+DP +D L F GD +HV + SD WW+
Sbjct: 3 TYVQALFDFDPQEDGELG-----FRRGDFIHVMDNSDPNWWKG 40
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 40.8 bits (94), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 18 SFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA 60
++ +ALFD+DP +D L F GD +HV + SD WW+
Sbjct: 3 TYVQALFDFDPQEDGELG-----FRRGDFIHVMDNSDPNWWKG 40
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+DD L FH G+ + N+S+ +WW+AR L +G+ G +PS
Sbjct: 5 ALYDYEAITEDD------LSFHKGEKFQILNSSEGDWWEARS-LTTGE---TGYIPS 51
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+DD L FH G+ + N+S+ +WW+AR L +G+ G +PS
Sbjct: 8 ALYDYEARTEDD------LSFHKGEKFQILNSSEGDWWEARS-LTTGE---TGYIPS 54
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+DD L FH G+ + N+S+ +WW+AR L +G+ G +PS
Sbjct: 10 ALYDYEARTEDD------LSFHKGEKFQILNSSEGDWWEARS-LTTGE---TGYIPS 56
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+DD L FH G+ + N+S+ +WW+AR L +G+ G +PS
Sbjct: 9 ALYDYEARTEDD------LSFHKGEKFQILNSSEGDWWEARS-LTTGE---TGYIPS 55
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+DD L FH G+ + N+S+ +WW+AR L +G+ G +PS
Sbjct: 6 ALYDYEAWTEDD------LSFHKGEKFQILNSSEGDWWEARS-LTTGE---TGYIPS 52
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3
Domain Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 39.7 bits (91), Expect = 0.001, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+DD L FH G+ + N+S+ +WW+AR L +G+ G +PS
Sbjct: 6 ALYDYEARTEDD------LSFHKGEKFQILNSSEGDWWEARS-LTTGE---TGYIPS 52
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 39.7 bits (91), Expect = 0.001, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+DD L FH G+ + N+S+ +WW+AR L +G+ G +PS
Sbjct: 5 ALYDYEARTEDD------LSFHKGEKFQILNSSEGDWWEARS-LTTGE---TGYIPS 51
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 39.7 bits (91), Expect = 0.001, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA 60
+ALFD+DP +D L F GD +HV + SD WW+
Sbjct: 4 QALFDFDPQEDGELG-----FRRGDFIHVMDNSDPNWWKG 38
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 39.7 bits (91), Expect = 0.001, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+DD L FH G+ + N+S+ +WW+AR L +G+ G +PS
Sbjct: 6 ALYDYEARTEDD------LSFHKGEKFQILNSSEGDWWEARS-LTTGE---TGYIPS 52
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn
Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn)
From Mus Musculus At 1.98 A Resolution
Length = 164
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+DD L FH G+ + N+S+ +WW+AR L +G+ G +PS
Sbjct: 9 ALYDYEARTEDD------LSFHKGEKFQILNSSEGDWWEARS-LTTGE---TGYIPS 55
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+DD L FH G+ + N+S+ +WW+AR L +G+ G +PS
Sbjct: 8 ALYDYEARTEDD------LSFHKGEKFQILNSSEGDWWEARS-LTTGE---TGYIPS 54
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 11/58 (18%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
AL+DY+ T+DD L FH G+ + N+S+ +WW+AR L +G+ G +PS
Sbjct: 20 ALYDYEAITEDD------LSFHKGEKFQILNSSEGDWWEARS-LTTGE---TGYIPSN 67
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide
P2l Corresponding To Residues 91-104 Of The P85 Subunit
Of Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 11/58 (18%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
AL+DY+ T+DD L FH G+ + N+S+ +WW+AR L +G+ G +PS
Sbjct: 10 ALYDYEARTEDD------LSFHKGEKFQILNSSEGDWWEARS-LTTGE---TGYIPSN 57
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 18 SFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA 60
++ +ALFD+DP +D L F GD +HV + SD WW+
Sbjct: 159 TYVQALFDFDPQEDGELG-----FRRGDFIHVMDNSDPNWWKG 196
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 38.1 bits (87), Expect = 0.004, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
+ RALFD++ G LPF GDIL + + +++WW A S ++G+ VP
Sbjct: 5 YVRALFDFN-----GNDEEDLPFKKGDILRIRDKPEEQWWNAE---DSEGKRGMIPVPYV 56
Query: 79 KRW 81
+++
Sbjct: 57 EKY 59
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 11/58 (18%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
AL+DY+ T+DD L FH G+ + N+S+ +WW+AR L +G+ G +PS
Sbjct: 20 ALYDYEAWTEDD------LSFHKGEKFQILNSSEGDWWEARS-LTTGE---TGYIPSN 67
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From
Oncogene Protein C-Crk
Length = 58
Score = 37.7 bits (86), Expect = 0.004, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
+ RALFD++ G LPF GDIL + + +++WW A S ++G+ VP
Sbjct: 3 YVRALFDFN-----GNDEEDLPFKKGDILRIRDKPEEQWWNAE---DSEGKRGMIPVPYV 54
Query: 79 KRW 81
+++
Sbjct: 55 EKY 57
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM
NMR RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 37.7 bits (86), Expect = 0.004, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+DD L FH G+ + N+S+ +WW+ R L +G+ G +PS
Sbjct: 12 ALYDYEARTEDD------LSFHKGEKFQILNSSEGDWWEVRS-LTTGE---TGYIPS 58
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 37.7 bits (86), Expect = 0.004, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
+ RALFD++ G LPF GDIL + + +++WW A S ++G+ VP
Sbjct: 3 YVRALFDFN-----GNDEEDLPFKKGDILRIRDKPEEQWWNAE---DSEGKRGMIPVPYV 54
Query: 79 KRW 81
+++
Sbjct: 55 EKY 57
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 37.7 bits (86), Expect = 0.004, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
+ RALFD++ G LPF GDIL + + +++WW A S ++G+ VP
Sbjct: 5 YVRALFDFN-----GNDEEDLPFKKGDILRIRDKPEEQWWNAE---DSEGKRGMIPVPYV 56
Query: 79 KRW 81
+++
Sbjct: 57 EKY 59
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 11/58 (18%)
Query: 21 RALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+DD L FH G+ + N+S+ +WW+AR L +G+ G +PS
Sbjct: 9 EALYDYEARTEDD------LSFHKGEKFQILNSSEGDWWEARS-LTTGE---TGYIPS 56
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
Length = 57
Score = 37.7 bits (86), Expect = 0.005, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
+ RALFD++ G LPF GDIL + + +++WW A S ++G+ VP
Sbjct: 3 YVRALFDFN-----GNDEEDLPFKKGDILRIRDKPEEQWWNAE---DSEGKRGMIPVPYV 54
Query: 79 KRW 81
+++
Sbjct: 55 EKY 57
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated
N- Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 37.4 bits (85), Expect = 0.005, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
+ RALFD++ G LPF GDIL + + +++WW A S ++G+ VP
Sbjct: 2 YVRALFDFN-----GNDEEDLPFKKGDILRIRDKPEEQWWNAE---DSEGKRGMIPVPYV 53
Query: 79 KRW 81
+++
Sbjct: 54 EKY 56
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 37.4 bits (85), Expect = 0.006, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
RAL+ ++P D L F GDI+++T+ SD WW+ G +G G++PS
Sbjct: 11 RALYTFEPRTPDELY-----FEEGDIIYITDMSDTNWWK-------GTSKGRTGLIPS 56
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 10 ILISTHLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA 60
+++ + RALFD++ G LPF GDIL + + +++WW A
Sbjct: 7 VILRQEEAEYVRALFDFN-----GNDEEDLPFKKGDILRIRDKPEEQWWNA 52
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR 61
+ RALFD++ D+ LP F GDIL + + +++WW A
Sbjct: 3 YVRALFDFNGNDDEDLP-----FKKGDILKIRDKPEEQWWNAE 40
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 36.6 bits (83), Expect = 0.009, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
RAL+ ++P D L F GDI+++T+ SD WW+ G +G G++PS
Sbjct: 7 RALYTFEPRTPDELY-----FEEGDIIYITDMSDTNWWK-------GTSKGRTGLIPS 52
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 11/58 (18%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
RAL+D++ +D+ L F +G+I+ V + SD WW+ + +GIG+ PS
Sbjct: 21 RALYDFEAVEDNELT-----FKHGEIIIVLDDSDANWWKGE------NHRGIGLFPSN 67
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 10 ILISTHLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA 60
+++ + RALFD++ G LPF GDIL + + +++WW A
Sbjct: 127 VILRQEEAEYVRALFDFN-----GNDEEDLPFKKGDILRIRDKPEEQWWNA 172
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 36.6 bits (83), Expect = 0.011, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 10/53 (18%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA-----RRVLPS 66
F +ALFD++P + S L F GD++ + N D WW+ R + PS
Sbjct: 4 FVQALFDFNPQE-----SGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPS 51
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 36.6 bits (83), Expect = 0.011, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 10/53 (18%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA-----RRVLPS 66
F +ALFD++P + S L F GD++ + N D WW+ R + PS
Sbjct: 4 FVQALFDFNPQE-----SGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPS 51
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 10 ILISTHLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA 60
+++ + RALFD++ G LPF GDIL + + +++WW A
Sbjct: 129 VILRQEEAEYVRALFDFN-----GNDEEDLPFKKGDILRIRDKPEEQWWNA 174
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 10 ILISTHLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA 60
+++ + RALFD++ G LPF GDIL + + +++WW A
Sbjct: 127 VILRQEEAEYVRALFDFN-----GNDEEDLPFKKGDILRIRDKPEEQWWNA 172
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 35.8 bits (81), Expect = 0.016, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 10/53 (18%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA-----RRVLPS 66
F +ALFD++P + S L F GD++ + N D WW+ R + PS
Sbjct: 6 FVQALFDFNPQE-----SGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPS 53
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 11/58 (18%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
RA++D++ +D+ L F G+I+ V + SD WW+ QGIG+ PS
Sbjct: 21 RAIYDFEAAEDNELT-----FKAGEIITVLDDSDPNWWKGET------HQGIGLFPSN 67
>pdb|1T3L|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium
Channel Beta Subunit Functional Core In Complex With
Alpha1 Interaction Domain
pdb|1T3S|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium
Channel Beta Subunit Functional Core
Length = 337
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 21 RALFDYDPTKDDGLPSRGLP--FHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
R Y +D +P G+ F D LHV +++WW R++ G E IG +PS+
Sbjct: 42 RTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIG-RLVKEGCE--IGFIPSR 98
Query: 79 -----KRWERKQRARD 89
R + +QRA++
Sbjct: 99 VKLENMRLQHEQRAKE 114
>pdb|1VYT|A Chain A, Beta3 Subunit Complexed With Aid
pdb|1VYT|B Chain B, Beta3 Subunit Complexed With Aid
Length = 351
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 38 GLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRWE-----RKQRAR 88
G+ F D LH+ ++WW R V GD I +PS +R E ++Q+AR
Sbjct: 69 GVNFEAKDFLHIKEKYSNDWWIGRLVKEGGD---IAFIPSPQRLESIRLKQEQKAR 121
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDD---EWWQAR 61
AL+DY+P DD LP + GD + + + D+ EWW AR
Sbjct: 175 ALWDYEPQNDDELPMK-----EGDCMTIIHREDEDEIEWWWAR 212
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDD---EWWQAR 61
AL+DY+P DD LP + GD + + + D+ EWW AR
Sbjct: 175 ALWDYEPQNDDELPMK-----EGDCMTIIHREDEDEIEWWWAR 212
>pdb|1VYU|A Chain A, Beta3 Subunit Of Voltage-Gated Ca2+-Channel
pdb|1VYU|B Chain B, Beta3 Subunit Of Voltage-Gated Ca2+-Channel
Length = 351
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 38 GLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRWE-----RKQRAR 88
G+ F D LH+ ++WW R V GD I +PS +R E ++Q+AR
Sbjct: 69 GVNFEAKDFLHIKEKYSNDWWIGRLVKEGGD---IAFIPSPQRLESIRLKQEQKAR 121
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 39 LPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRWERKQRARDRTVK 93
LPF G+ L + + ++ +WW+AR L + G+VP+ + + DRT K
Sbjct: 164 LPFEQGERLEILSKTNQDWWEARNALGT-----TGLVPANYVQIQMEFHNDRTSK 213
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4
And Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
Length = 59
Score = 33.9 bits (76), Expect = 0.073, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 16 LFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA 60
L S RA F++ T +D L F GD++HVT + WW+
Sbjct: 3 LGSVVRAKFNFQQTNEDELS-----FSKGDVIHVTRVEEGGWWEG 42
>pdb|1VYV|A Chain A, Beta4 Subunit Of Ca2+ Channel
pdb|1VYV|B Chain B, Beta4 Subunit Of Ca2+ Channel
Length = 359
Score = 33.5 bits (75), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 30 KDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRWE 82
+D +PS + F D LH+ +++WW R++ G E IG +PS R E
Sbjct: 60 EDVPVPSSAVSFDAKDFLHIKEKYNNDWWIG-RLVKEGCE--IGFIPSPLRLE 109
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 33.5 bits (75), Expect = 0.095, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR 61
++RAL+D++ ++D L F G+++ V ++S+ WW R
Sbjct: 5 WARALYDFEALEEDELG-----FRSGEVVEVLDSSNPSWWTGR 42
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 33.5 bits (75), Expect = 0.096, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR 61
++RAL+D++ ++D L F G+++ V ++S+ WW R
Sbjct: 4 WARALYDFEALEEDELG-----FRSGEVVEVLDSSNPSWWTGR 41
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 33.5 bits (75), Expect = 0.096, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR 61
++RAL+D++ ++D L F G+++ V ++S+ WW R
Sbjct: 7 WARALYDFEALEEDELG-----FRSGEVVEVLDSSNPSWWTGR 44
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 33.1 bits (74), Expect = 0.10, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR 61
++RAL+D++ ++D L F G+++ V ++S+ WW R
Sbjct: 3 WARALYDFEALEEDELG-----FRSGEVVEVLDSSNPSWWTGR 40
>pdb|4DEX|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel
Beta-2 Subunit In Complex With The Cav2.2 I-Ii Linker
Length = 339
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 21 RALFDYDPTKDDGLPSRGLP--FHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS- 77
R Y +D +P G+ F D LHV +++WW R++ G E IG +PS
Sbjct: 44 RTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIG-RLVKEGCE--IGFIPSP 100
Query: 78 ----KKRWERKQRARD 89
R + +QRA++
Sbjct: 101 VKLENMRLQHEQRAKE 116
>pdb|4DEY|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel
Beta-2 Subunit In Complex With The Cav1.2 I-Ii Linker
Length = 337
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 21 RALFDYDPTKDDGLPSRGLP--FHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS- 77
R Y +D +P G+ F D LHV +++WW R++ G E IG +PS
Sbjct: 42 RTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIG-RLVKEGCE--IGFIPSP 98
Query: 78 ----KKRWERKQRARD 89
R + +QRA++
Sbjct: 99 VKLENMRLQHEQRAKE 114
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 32.7 bits (73), Expect = 0.14, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA 60
RA F++ T +D L F GD++HVT + WW+
Sbjct: 12 RAKFNFQQTNEDELS-----FSKGDVIHVTRVEEGGWWEG 46
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGI-GIVPS 77
A++DY +D L F G +++V N D +WWQ G+ G+ G+ PS
Sbjct: 23 AMYDYAANNEDELS-----FSKGQLINVMNKDDPDWWQ-------GEINGVTGLFPS 67
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
Length = 61
Score = 32.7 bits (73), Expect = 0.14, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA 60
RA F++ T +D L F GD++HVT + WW+
Sbjct: 10 RAKFNFQQTNEDELS-----FSKGDVIHVTRVEEGGWWEG 44
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 32.7 bits (73), Expect = 0.16, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA 60
RA F++ T +D L F GD++HVT + WW+
Sbjct: 10 RAKFNFQQTNEDELS-----FSKGDVIHVTRVEEGGWWEG 44
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 39 LPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
LPF G+ L + + ++ +WW+AR L + G+VP+
Sbjct: 135 LPFEQGERLEILSKTNQDWWEARNALGT-----TGLVPA 168
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 17 FSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR 61
+ R L+D+ P D + LPF G+IL + +++WW AR
Sbjct: 125 LEYVRTLYDF-PGND----AEDLPFKKGEILVIIEKPEEQWWSAR 164
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 17 FSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR 61
+ R L+D+ P D + LPF G+IL + +++WW AR
Sbjct: 125 LEYVRTLYDF-PGND----AEDLPFKKGEILVIIEKPEEQWWSAR 164
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
RAL+ ++P D L GDI+++T+ SD WW+ G +G G++PS
Sbjct: 18 RALYTFEPRTPDELY-----IEEGDIIYITDXSDTNWWK-------GTSKGRTGLIPS 63
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
AL+DY+ T+ L FH G+ + + +WW+AR L +G+ G +PS
Sbjct: 11 ALYDYNATR-----WTDLSFHKGEKFQILDGDSGDWWEARS-LTTGE---TGYIPSN 58
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 11 LISTHLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR 61
LIS + AL+D+ T DD + L F GD++ V +A++ EWW R
Sbjct: 61 LISDGSVVCAEALWDH-VTXDD----QELGFKAGDVIEVXDATNREWWWGR 106
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 11 LISTHLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR 61
LIS + AL+D+ T DD + L F GD++ V +A++ EWW R
Sbjct: 24 LISDGSVVCAEALWDH-VTMDD----QELGFKAGDVIEVMDATNREWWWGR 69
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 31.6 bits (70), Expect = 0.32, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T +D L F G+ + N ++ +WW+AR + + G +PS
Sbjct: 10 ALYDYEARTTED------LSFKKGERFQIINNTEGDWWEARSIATGKN----GYIPS 56
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
++DY DD L F G I++V N D +WW+ G+ G +G+ PS
Sbjct: 7 GMYDYTAQNDDELA-----FSKGQIINVLNKEDPDWWK-------GEVSGQVGLFPS 51
>pdb|1T0J|A Chain A, Crystal Structure Of A Complex Between Voltage-Gated
Calcium Channel Beta2a Subunit And A Peptide Of The
Alpha1c Subunit
Length = 132
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 26 YDPTKDDGLPSRGLP--FHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS-----K 78
Y ++D +P G+ F D LHV +++WW R++ G E IG +PS
Sbjct: 57 YSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIG-RLVKEGCE--IGFIPSPVKLEN 113
Query: 79 KRWERKQRAR 88
R + +QRA+
Sbjct: 114 MRLQHEQRAK 123
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related
Kinase
Length = 77
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSG---DEQGIGIVPS 77
ALFDY T +D L F GD L V + S + WW AR + G +Q G +PS
Sbjct: 12 ALFDYQARTAED------LSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPS 65
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In
Complex With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 20 SRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA 60
RAL+D++P + L F GDI+ +TN D+ W++
Sbjct: 14 CRALYDFEPENEGELG-----FKEGDIITLTNQIDENWYEG 49
>pdb|1T0H|A Chain A, Crystal Structure Of The Rattus Norvegicus Voltage Gated
Calcium Channel Beta Subunit Isoform 2a
Length = 132
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 26 YDPTKDDGLPSRG--LPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS-----K 78
Y ++D +P G + F D LHV +++WW R++ G E IG +PS
Sbjct: 57 YSAAQEDDVPVPGXAISFEAKDFLHVKEKFNNDWWIG-RLVKEGCE--IGFIPSPVKLEN 113
Query: 79 KRWERKQRAR 88
R + +QRA+
Sbjct: 114 XRLQHEQRAK 123
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 11 LISTHLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR 61
LIS + AL+D+ T DD + L F GD++ V +A++ EWW R
Sbjct: 30 LISDGSVVCAEALWDH-VTMDD----QELGFKAGDVIEVMDATNREWWWGR 75
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA 60
RAL+D++P + L F GDI+ +TN D+ W++
Sbjct: 11 RALYDFEPENEGELG-----FKEGDIITLTNQIDENWYEG 45
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 26/79 (32%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRW 81
AL+DY R + GDIL + N+++ +WW+
Sbjct: 11 ALYDYQEK-----SPREVTMKKGDILTLLNSTNKDWWKV--------------------- 44
Query: 82 ERKQRARDRTVKFQGHVPV 100
E K A D+T + QG VP
Sbjct: 45 EVKATANDKTYERQGFVPA 63
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 30.0 bits (66), Expect = 0.98, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA 60
R L+D++P L F GDI+ +TN D+ W++
Sbjct: 7 RGLYDFEPENQGELG-----FKEGDIITLTNQIDENWYEG 41
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
AL+DY+ T+ L FH G+ + +WW+AR L +G+ G +PS
Sbjct: 11 ALYDYNATR-----WTDLSFHKGEKFQILEFGPGDWWEARS-LTTGE---TGYIPSN 58
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 29.6 bits (65), Expect = 1.2, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG 71
AL+DY R + GDIL + N+++ +WW+ GD QG
Sbjct: 11 ALYDYQEKS-----PREVTMKKGDILTLLNSTNKDWWKVE----VGDRQG 51
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 20 SRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA 60
+AL+D++P D L F GD++ +TN D+ W++
Sbjct: 16 CKALYDFEPEND-----GELGFREGDLITLTNQIDENWYEG 51
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRV 63
AL+DY+ T +D L F G+ + N ++ +WW+AR +
Sbjct: 32 ALYDYEARTTED------LSFKKGERFQIINNTEGDWWEARSI 68
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR 61
A++DY +D L F G +++V N D +WWQ
Sbjct: 39 AMYDYAANNEDELS-----FSKGQLINVMNKDDPDWWQGE 73
>pdb|2A5D|B Chain B, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|B Chain B, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2A5G|B Chain B, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 193
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
Query: 5 YIVNVILISTHLFSFSRALFDYDPTKDDGLPSR--GLPF---------HYG---DILHVT 50
Y + VI + ++F+ + L Y P DD S G+P+ H+G + LH
Sbjct: 84 YYIYVIATAPNMFNVNDVLGAYSPHPDDQDVSALGGIPYSQIYGWYRVHFGVLDEQLHRN 143
Query: 51 NASDDEWWQARRVLPSGDEQGIGIVPSKKRWERKQ 85
D ++ + P+ D G+ P + R R++
Sbjct: 144 RGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREE 178
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 28.9 bits (63), Expect = 2.1, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 33 GLPSRGLPFHYGDILHVTNASD--DEWWQAR 61
G S LPF GD++ + SD ++WW R
Sbjct: 14 GEESGDLPFRKGDVITILKKSDSQNDWWTGR 44
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
Length = 64
Score = 28.5 bits (62), Expect = 3.0, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+ D L F G+ L + N ++ +WW A L +G G +PS
Sbjct: 12 ALYDYESRTETD------LSFKKGERLQIVNNTEGDWWLAHS-LTTGQ---TGYIPS 58
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 28.5 bits (62), Expect = 3.1, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+ D L F G+ L + N ++ +WW A L +G G +PS
Sbjct: 12 ALYDYESRTETD------LSFKKGERLQIVNNTEGDWWLAHS-LTTGQ---TGYIPS 58
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 28.1 bits (61), Expect = 3.3, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+ D L F G+ L + N ++ +WW A L +G G +PS
Sbjct: 7 ALYDYESRTETD------LSFKKGERLQIVNNTEGDWWLAHS-LSTGQ---TGYIPS 53
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 28.1 bits (61), Expect = 3.4, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQA 60
+ LFDY P +D L GD++ V ++ WW
Sbjct: 8 KVLFDYSPQNED-----ELELIVGDVIDVIEEVEEGWWSG 42
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Proline- Serine-Threonine Phosphatase-Interacting
Protein 1
Length = 69
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARR 62
RAL+DY D L GDIL V +D WW R
Sbjct: 12 RALYDYTAQNPDELD-----LSAGDILEVILEGEDGWWTVER 48
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Hexagonal Crystal Obtained In Sodium
Formate At Ph 6.5
Length = 62
Score = 27.7 bits (60), Expect = 4.5, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG 71
AL+DY D + + GDIL + N+++ +WW+ D QG
Sbjct: 11 ALYDYQEKSPDEVTMKK-----GDILTLLNSTNKDWWKVE----VNDRQG 51
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 34 LPSRGLPFHYGDILHVTNASDDEWWQAR 61
+ +R L F GD++ V +AS+ +WW +
Sbjct: 22 MANRELAFKAGDVIKVLDASNKDWWWGQ 49
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+ D L F G+ L + N ++ +WW A L +G G +PS
Sbjct: 7 ALYDYESRTETD------LSFKKGERLQIVNNTEGDWWLAHS-LSTGQ---TGYIPS 53
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase
C-src, In Complex With Amp-pnp
Length = 452
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+ D L F G+ L + N ++ +WW A L +G G +PS
Sbjct: 7 ALYDYESRTETD------LSFKKGERLQIVNNTEGDWWLAHS-LSTGQ---TGYIPS 53
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+ D L F G+ L + N ++ +WW A L +G G +PS
Sbjct: 7 ALYDYESRTETD------LSFKKGERLQIVNNTEGDWWLAHS-LSTGQ---TGYIPS 53
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 27.7 bits (60), Expect = 5.2, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQ 59
AL+DY D + + GDIL + N+++ +WW+
Sbjct: 6 ALYDYQEKGDSEVTMKK-----GDILTLLNSTNKDWWK 38
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 26/79 (32%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRW 81
AL+DY R + GDIL + N+++ +WW+
Sbjct: 11 ALYDYQEK-----SPREVTMKKGDILTLLNSTNKDWWKV--------------------- 44
Query: 82 ERKQRARDRTVKFQGHVPV 100
E K A +T + QG VP
Sbjct: 45 EVKATANGKTYERQGFVPA 63
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
7
Length = 57
Score = 27.3 bits (59), Expect = 5.5, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQ 59
AL+DY D + + GDIL + N+++ +WW+
Sbjct: 6 ALYDYQEKSPDEVTMKK-----GDILTLLNSTNKDWWK 38
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of
P67phox Complexed With The C-Terminal Tail Region Of
P47phox
Length = 62
Score = 27.3 bits (59), Expect = 6.0, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 13/56 (23%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVP 76
ALF Y+ T+ + L F GDI+ V + ++EW + G+ +G +GI P
Sbjct: 10 ALFSYEATQPEDLE-----FQEGDIILVLSKVNEEWLE-------GESKGKVGIFP 53
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+ D L F G+ L + N ++ +WW A L +G G +PS
Sbjct: 8 ALYDYESRTETD------LSFKKGERLQIVNNTEGDWWLAHS-LTTGQ---TGYIPS 54
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 14 THLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIG 73
HL L+D+ D+ L F GD+ HV +++WW A + +G G
Sbjct: 7 AHLGPKYVGLWDFKSRTDEELS-----FRAGDVFHVAR-KEEQWWWATLLDEAGGAVAQG 60
Query: 74 IVP 76
VP
Sbjct: 61 YVP 63
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 22 ALFDYDP-TKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+ D L F G+ L + N ++ +WW A L +G G +PS
Sbjct: 90 ALYDYESRTETD------LSFKKGERLQIVNNTEGDWWLAHS-LSTGQ---TGYIPS 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,044,253
Number of Sequences: 62578
Number of extensions: 243091
Number of successful extensions: 595
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 512
Number of HSP's gapped (non-prelim): 111
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)