Query psy10225
Match_columns 207
No_of_seqs 235 out of 1157
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 21:05:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0708|consensus 99.9 7.9E-28 1.7E-32 216.6 -1.7 186 14-201 63-285 (359)
2 KOG3580|consensus 99.8 9.5E-22 2.1E-26 185.6 3.6 142 8-155 495-664 (1027)
3 KOG0609|consensus 99.8 3.8E-22 8.2E-27 186.4 0.8 172 17-191 214-435 (542)
4 PF14604 SH3_9: Variant SH3 do 99.3 6.3E-12 1.4E-16 83.6 5.0 48 22-80 1-48 (49)
5 PF00018 SH3_1: SH3 domain; I 99.3 8.7E-12 1.9E-16 82.0 5.2 48 21-77 1-48 (48)
6 PF07653 SH3_2: Variant SH3 do 99.2 1.1E-11 2.4E-16 83.8 4.5 53 19-82 1-54 (55)
7 KOG2199|consensus 99.1 3.5E-11 7.5E-16 110.0 1.3 52 19-81 217-268 (462)
8 KOG4792|consensus 99.0 2.5E-10 5.4E-15 98.2 3.3 74 3-86 92-183 (293)
9 cd00174 SH3 Src homology 3 dom 99.0 1.5E-09 3.3E-14 70.6 5.6 52 20-81 2-53 (54)
10 smart00326 SH3 Src homology 3 99.0 1.9E-09 4.2E-14 70.8 5.8 54 18-81 3-56 (58)
11 KOG3812|consensus 98.9 6.6E-10 1.4E-14 100.3 3.8 68 17-87 58-127 (475)
12 KOG2070|consensus 98.9 2.2E-09 4.9E-14 100.5 5.4 59 15-84 15-73 (661)
13 KOG1029|consensus 98.8 1.3E-09 2.8E-14 106.3 2.5 53 18-81 1054-1106(1118)
14 KOG1118|consensus 98.8 1.8E-09 3.9E-14 96.2 1.7 57 14-81 303-359 (366)
15 KOG4226|consensus 98.6 1.8E-08 3.9E-13 88.9 1.4 54 19-82 193-248 (379)
16 KOG0162|consensus 98.4 1.6E-07 3.5E-12 91.6 3.6 53 19-82 1053-1105(1106)
17 KOG4225|consensus 98.4 2.6E-07 5.7E-12 85.7 4.0 52 19-81 232-283 (489)
18 KOG4348|consensus 98.3 5.4E-07 1.2E-11 83.8 3.9 56 15-81 259-316 (627)
19 KOG2856|consensus 98.3 2.4E-07 5.3E-12 84.5 1.5 56 16-81 413-469 (472)
20 KOG4226|consensus 98.3 6E-07 1.3E-11 79.4 3.8 53 21-84 111-163 (379)
21 KOG2996|consensus 98.2 8.6E-07 1.9E-11 84.9 3.9 53 20-83 808-862 (865)
22 KOG0515|consensus 98.1 1.3E-06 2.9E-11 83.0 2.3 51 20-81 686-739 (752)
23 KOG3601|consensus 98.1 1.8E-06 4E-11 73.5 2.6 56 15-81 161-216 (222)
24 KOG4225|consensus 98.0 4E-06 8.7E-11 77.9 4.0 58 15-81 430-487 (489)
25 KOG1264|consensus 98.0 3E-06 6.6E-11 83.8 3.3 56 18-83 775-830 (1267)
26 KOG3875|consensus 98.0 9E-07 1.9E-11 79.2 -0.7 57 16-81 267-328 (362)
27 KOG4348|consensus 98.0 1.4E-06 3E-11 81.1 -0.4 53 20-83 103-155 (627)
28 KOG3655|consensus 97.8 5.9E-06 1.3E-10 77.4 1.4 53 18-80 428-480 (484)
29 KOG2546|consensus 97.7 1.5E-05 3.3E-10 74.0 2.4 51 20-81 426-476 (483)
30 PF00625 Guanylate_kin: Guanyl 97.7 1.2E-06 2.7E-11 71.8 -5.0 68 122-191 2-97 (183)
31 KOG1843|consensus 97.7 2E-05 4.3E-10 72.9 1.8 52 19-81 418-471 (473)
32 KOG0197|consensus 97.6 1.7E-05 3.6E-10 74.9 0.4 56 19-83 13-69 (468)
33 KOG1029|consensus 97.5 0.00011 2.4E-09 72.6 4.0 56 16-82 692-749 (1118)
34 KOG3632|consensus 97.1 0.00048 1E-08 69.7 4.0 56 20-83 1141-1202(1335)
35 smart00072 GuKc Guanylate kina 97.1 3.4E-05 7.4E-10 63.4 -3.4 67 122-190 2-96 (184)
36 KOG4278|consensus 97.0 0.00064 1.4E-08 66.8 4.1 53 17-81 91-144 (1157)
37 KOG2222|consensus 96.8 0.00027 5.8E-09 67.1 -0.3 52 19-81 550-601 (848)
38 KOG1702|consensus 96.7 0.0012 2.6E-08 56.5 2.7 53 19-80 209-261 (264)
39 KOG3771|consensus 96.6 0.00096 2.1E-08 62.7 1.8 59 11-80 394-453 (460)
40 KOG4575|consensus 96.5 0.0034 7.4E-08 61.2 4.6 58 14-80 5-62 (874)
41 KOG3557|consensus 96.4 0.00086 1.9E-08 65.2 0.2 55 17-82 500-554 (721)
42 KOG3523|consensus 96.2 0.0013 2.8E-08 63.7 0.0 56 20-84 611-666 (695)
43 KOG3601|consensus 95.4 0.0028 6.1E-08 54.3 -1.0 48 22-80 5-53 (222)
44 KOG3775|consensus 94.7 0.012 2.7E-07 54.4 1.0 55 20-83 265-319 (482)
45 KOG4792|consensus 93.9 0.08 1.7E-06 46.3 4.1 60 12-80 222-281 (293)
46 KOG4773|consensus 93.8 0.011 2.4E-07 54.1 -1.2 50 20-80 178-227 (386)
47 KOG1451|consensus 93.6 0.072 1.6E-06 52.0 3.7 51 20-81 759-810 (812)
48 KOG3632|consensus 93.0 0.061 1.3E-06 55.1 2.4 55 20-82 1247-1306(1335)
49 KOG2528|consensus 93.0 0.031 6.7E-07 52.7 0.3 54 19-82 4-58 (490)
50 KOG3725|consensus 92.6 0.048 1.1E-06 48.5 1.0 52 19-81 319-372 (375)
51 KOG0199|consensus 91.1 0.22 4.8E-06 50.1 3.7 53 20-81 377-430 (1039)
52 KOG4429|consensus 91.0 0.16 3.5E-06 45.9 2.5 52 20-82 366-417 (421)
53 PF14603 hSH3: Helically-exten 90.9 0.36 7.7E-06 36.1 3.8 40 38-82 32-71 (89)
54 PF08239 SH3_3: Bacterial SH3 87.6 0.84 1.8E-05 29.8 3.4 36 40-80 18-54 (55)
55 PLN02772 guanylate kinase 86.9 0.067 1.5E-06 50.0 -3.0 39 121-162 134-176 (398)
56 PRK10884 SH3 domain-containing 83.3 1.3 2.8E-05 37.9 3.3 38 40-82 49-87 (206)
57 smart00287 SH3b Bacterial SH3 82.6 2.1 4.6E-05 28.4 3.7 36 39-79 25-60 (63)
58 PRK14737 gmk guanylate kinase; 81.1 0.23 4.9E-06 41.3 -2.0 64 122-189 4-96 (186)
59 KOG2996|consensus 75.2 1.3 2.7E-05 43.7 0.9 39 38-80 626-665 (865)
60 smart00743 Agenet Tudor-like d 71.2 6 0.00013 26.4 3.3 25 40-64 2-26 (61)
61 KOG0040|consensus 68.3 0.26 5.7E-06 52.7 -5.7 52 19-81 970-1021(2399)
62 PF11302 DUF3104: Protein of u 67.9 6.3 0.00014 28.6 2.9 27 38-64 3-35 (75)
63 KOG3565|consensus 62.0 2.6 5.7E-05 41.8 0.1 56 17-81 578-634 (640)
64 KOG3705|consensus 60.1 8.4 0.00018 36.6 3.0 53 20-81 512-564 (580)
65 PRK13914 invasion associated s 55.8 13 0.00029 35.8 3.6 39 40-83 104-142 (481)
66 COG3103 SH3 domain protein [Si 53.4 20 0.00043 30.7 4.0 40 40-84 49-89 (205)
67 PF06347 SH3_4: Bacterial SH3 52.7 29 0.00064 22.6 4.0 35 39-80 19-53 (55)
68 KOG0707|consensus 28.3 21 0.00046 31.2 0.3 38 119-159 33-75 (231)
69 cd00071 GMPK Guanosine monopho 26.4 17 0.00037 28.3 -0.6 35 124-161 1-39 (137)
70 PRK09371 gas vesicle synthesis 23.4 1.5E+02 0.0032 21.1 3.7 27 157-183 9-36 (68)
No 1
>KOG0708|consensus
Probab=99.93 E-value=7.9e-28 Score=216.64 Aligned_cols=186 Identities=31% Similarity=0.436 Sum_probs=153.9
Q ss_pred CCceeEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhHHhHhhhhccccc
Q psy10225 14 THLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRWERKQRARDRTVK 93 (207)
Q Consensus 14 ~~~s~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~E~~~~~~~~~~~ 93 (207)
+.+..|++++|||+...+...|.+.++|..|++++++...+..||+++++..++.....|++|+....+++.++++++.+
T Consensus 63 ~~~~~~v~~~~d~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~e~~~~r~~s~~~~~~~~~~~~~~~~~~rr~r~r~k~~~ 142 (359)
T KOG0708|consen 63 EWRCLYVDALFDYDLDRGSPGYSRAQSFLYGQILHLISRSDDEWWQARHVSPRGEEKDVGLVPSKSRRARRVRLRLKRDS 142 (359)
T ss_pred CCceeEeeccccccccCCCCCcchhhhhhhhhhhhccccccHHHHHhhccCCCccccccccccccccccccccccccccc
Confidence 36788999999999988777777799999999999999999999999999988888889999999999999999998888
Q ss_pred cccccccc-ccccccc-----c---eeccccccc-------cccccceEEccCCcccccccccCCccCCcccccCCCcch
Q psy10225 94 FQGHVPVL-LEKVSIT-----Q---FSMIELNTI-------FKLIEKSVALGLTRGLKAGQMTSNFKEHKYLDLDVPIGT 157 (207)
Q Consensus 94 f~~~~~~~-~~~~~~~-----~---~~~~~~~~~-------~~~~RPVvilgp~~dv~~~~L~~e~P~~~f~~~~~p~~t 157 (207)
|+.+.+.. +.+.... . .+...+..| +...|||+||||+.|..+++|+.|+|+ +| ++|+||++
T Consensus 143 f~~~~~~~~~~s~d~~~~~~~~~~~~~e~~~lsY~~V~~~~~~~~RPVlilg~~~d~l~~~Lv~e~~~-kF-~~C~~~t~ 220 (359)
T KOG0708|consen 143 FNSGRDFPFLLSKDGLDMSSDENELGKELSLLSYELVERLDSNYLRPVLILGPLLDRLLDNLVNEFPD-KF-KSCLPETL 220 (359)
T ss_pred ccccCCcccccCcccccccccccccccccccccchhhhhhhccccCceEeccchHHHHHHHHHHhhhc-cc-cccchhhh
Confidence 77652111 0011111 0 011112223 889999999999999999999999999 99 99999976
Q ss_pred hH---HHHhhccceEEEE-------EEEEEEEEE-EEeccccc----------cccceeeEEEEe
Q psy10225 158 IR---RFQYGLKKIIQMF-------LYSVTVISI-AICLKNKH----------NELQEHHILVIN 201 (207)
Q Consensus 158 ~~---~~~~~~~~~~~~~-------~~~~~v~~~-~~~~~~~h----------~~~~~~~~~~~~ 201 (207)
++ .+|+.+++++||+ +|||||+|| +|++||.| +|||+-+||=|-
T Consensus 221 ~~~~~eme~~~k~~~fI~~~q~~~~~~~tsv~si~~va~k~~HCiLdv~~~ai~rLq~~~IyPIv 285 (359)
T KOG0708|consen 221 RPSREEMERDSKEETFIDAGQRSNGLYGTSVASIREVAEKGKHCLLDVGGDAIRRLQRNQIYPIV 285 (359)
T ss_pred cccHHHhhhhcccCceeeecccCCCcceehHHHHHHHhcCCCceEEecCcchHHHHHhcceeceE
Confidence 55 5999999999999 459999999 99999999 589999999763
No 2
>KOG3580|consensus
Probab=99.84 E-value=9.5e-22 Score=185.64 Aligned_cols=142 Identities=17% Similarity=0.235 Sum_probs=107.0
Q ss_pred eeeecCCCceeEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEec---CCCeeEEEEcCCCCCCceeeeecCChhHHhH
Q psy10225 8 NVILISTHLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNAS---DDEWWQARRVLPSGDEQGIGIVPSKKRWERK 84 (207)
Q Consensus 8 ~~l~~~~~~s~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~---d~~WW~ar~~~~~~~~~~~G~IPS~~~~E~~ 84 (207)
.|+.+..||+||||++|+|+++.+. +|+|.+||+|+|+++. ..|-|.|.+++.+..+.++|+||++.++|+.
T Consensus 495 ~iv~s~vGDSFyIRtHFE~Eke~P~-----gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPNksRAEQl 569 (1027)
T KOG3580|consen 495 DIVASGVGDSFYIRTHFECEKETPQ-----GLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPNKSRAEQL 569 (1027)
T ss_pred HHHhccCCceeEEeeeeeecCCCCc-----cccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCCccHHHHH
Confidence 3677888999999999999999999 9999999999999984 3467889999887778899999999999976
Q ss_pred hhh---hcc-----ccccccccccccccccc--------------cceeccc--cccccccccceEEccCCccccccccc
Q psy10225 85 QRA---RDR-----TVKFQGHVPVLLEKVSI--------------TQFSMIE--LNTIFKLIEKSVALGLTRGLKAGQMT 140 (207)
Q Consensus 85 ~~~---~~~-----~~~f~~~~~~~~~~~~~--------------~~~~~~~--~~~~~~~~RPVvilgp~~dv~~~~L~ 140 (207)
... ++. ++.|++-.+-+...+.+ ..|..++ ++..++|+|||+||||++||+|+||+
T Consensus 570 ASvq~aqr~~agGdRAdFWR~RGlRsg~KknlrkSREDLsA~~vqtkfPaYERVvLREAgFkRPVvifGPiADiAmeKLa 649 (1027)
T KOG3580|consen 570 ASVQNAQRDNAGGDRADFWRMRGLRSGVKKNLRKSREDLSAVVVQTKFPAYERVVLREAGFKRPVVIFGPIADIAMEKLA 649 (1027)
T ss_pred HHHHhhccccccchHHHHHHHhhhhhhhhhhhhhhhhhhhhceecccCCchhhhhhhhhcccCceEEeccHHHHHHHHHh
Confidence 433 221 22343321111111222 2233333 23448899999999999999999999
Q ss_pred CCccCCcc-cccCCCc
Q psy10225 141 SNFKEHKY-LDLDVPI 155 (207)
Q Consensus 141 ~e~P~~~f-~~~~~p~ 155 (207)
.|+|| .| +...+|.
T Consensus 650 ~E~PD-~fqiAktepr 664 (1027)
T KOG3580|consen 650 NELPD-WFQIAKTEPR 664 (1027)
T ss_pred hhCcc-hhhhhccccc
Confidence 99999 99 6666665
No 3
>KOG0609|consensus
Probab=99.83 E-value=3.8e-22 Score=186.41 Aligned_cols=172 Identities=28% Similarity=0.425 Sum_probs=130.1
Q ss_pred eeEEEEeccCCCCCCCCCCCC--CccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhHHhHhhhhcccc--
Q psy10225 17 FSFSRALFDYDPTKDDGLPSR--GLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRWERKQRARDRTV-- 92 (207)
Q Consensus 17 s~~vRAlfdY~~~~d~~~P~~--eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~E~~~~~~~~~~-- 92 (207)
..|+||+|||+|..|..+||+ +|+|++||||+|++++|.+||+|++.++. ..+..|+|||+..+|++.+..+...
T Consensus 214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~-~~~~AGLiPS~~~qerr~a~~~~~~~~ 292 (542)
T KOG0609|consen 214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDP-FGGLAGLIPSKELQERRVACLRREVSK 292 (542)
T ss_pred eeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCc-cccccccccCHHHHHHHHHHHhhhccc
Confidence 479999999999999999999 99999999999999999999999998753 3577899999999998855543311
Q ss_pred --------cccccc---ccccccccccceeccccccc------cccccceEEccCCccccc----ccccCCccCCccccc
Q psy10225 93 --------KFQGHV---PVLLEKVSITQFSMIELNTI------FKLIEKSVALGLTRGLKA----GQMTSNFKEHKYLDL 151 (207)
Q Consensus 93 --------~f~~~~---~~~~~~~~~~~~~~~~~~~~------~~~~RPVvilgp~~dv~~----~~L~~e~P~~~f~~~ 151 (207)
.+..+. ++++..+.++.++..++++| ++|+|.+|||.+..|+++ .+|+...|+ .| +.
T Consensus 293 ~~~~~~c~~l~kkkk~~~~~y~~~~~~~~d~~~~~tYEEV~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~-~f-~~ 370 (542)
T KOG0609|consen 293 EPEKTRCQRLSKKKKKKKSKYLGKHSAVFDQPELLTYEEVVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNPD-RF-GT 370 (542)
T ss_pred CCcCchhcccchhhhhhhhhhhhhcchhhhccccccHHHHhhhcccccceEEEECCcccchHHHHHHHHhhCcc-cc-cc
Confidence 111111 11234555667777666655 779977888777789887 489999999 99 99
Q ss_pred CCCcchhHH-----------------HHhhccceEEEE-------EEEEEEEEE-EEeccccccc
Q psy10225 152 DVPIGTIRR-----------------FQYGLKKIIQMF-------LYSVTVISI-AICLKNKHNE 191 (207)
Q Consensus 152 ~~p~~t~~~-----------------~~~~~~~~~~~~-------~~~~~v~~~-~~~~~~~h~~ 191 (207)
.||+|||.- ||+-+...=|+. .|-|.+-|| .|+++|+=|-
T Consensus 371 ~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE~GEy~~nlYGTs~dsVr~v~~~gKicv 435 (542)
T KOG0609|consen 371 AVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLEYGEYEGNLYGTSLDSVRNVIASGKICV 435 (542)
T ss_pred CCCCcCCCCCCCCCCCccceeeehHHHhhhhhcCCceecCcchhccccchHHHHHHHHHhCCEEE
Confidence 999988754 444444443444 458888888 8888876553
No 4
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.27 E-value=6.3e-12 Score=83.60 Aligned_cols=48 Identities=38% Similarity=0.801 Sum_probs=43.0
Q ss_pred EeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChh
Q psy10225 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKR 80 (207)
Q Consensus 22 AlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~ 80 (207)
|+|||.++.++ +|+|++||+|.|+.+.+.+||.++. +++.|++|++|+
T Consensus 1 Al~~y~~~~~d-----ELs~~~Gd~i~v~~~~~~~W~~g~~------~g~~G~~P~~yV 48 (49)
T PF14604_consen 1 ALYDYEAQDPD-----ELSFKKGDVITVLEKSDDGWWYGRN------TGRTGLFPANYV 48 (49)
T ss_dssp ESSCBCSSSTT-----B-EB-TTEEEEEEEESSTSEEEEEE------TTEEEEEEGGGE
T ss_pred CCccCCCCCcC-----EeeEcCCCEEEEEEeCCCCEEEEEE------CCEEEEECHHhC
Confidence 68999999999 9999999999999999999999997 589999999985
No 5
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.26 E-value=8.7e-12 Score=82.03 Aligned_cols=48 Identities=46% Similarity=0.837 Sum_probs=43.7
Q ss_pred EEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecC
Q psy10225 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77 (207)
Q Consensus 21 RAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS 77 (207)
+|+|||+++.++ +|+|++||++.|++..+.+||.++... +++.|+||+
T Consensus 1 ~Alydf~~~~~~-----eLs~~~Gd~i~v~~~~~~~Ww~~~~~~----~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPD-----ELSFKKGDIIEVLEKSDDGWWKVRNES----TGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTT-----BSEB-TTEEEEEEEESSSSEEEEEETT----TTEEEEEEG
T ss_pred CCCeeeCCCCCC-----EEeEECCCEEEEEEecCCCEEEEEECC----CCcEEEeeC
Confidence 699999999999 999999999999999999999999974 478999996
No 6
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.23 E-value=1.1e-11 Score=83.76 Aligned_cols=53 Identities=36% Similarity=0.675 Sum_probs=46.1
Q ss_pred EEEEeccCCCCCCCCCCCCCccCCCCCEEEEE-EecCCCeeEEEEcCCCCCCceeeeecCChhHH
Q psy10225 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVT-NASDDEWWQARRVLPSGDEQGIGIVPSKKRWE 82 (207)
Q Consensus 19 ~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl-~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~E 82 (207)
|++|++||.++.++ +|+|++||++.|+ ++.+.+||.++. .++.|+||++++.+
T Consensus 1 ~~~a~~d~~~~~~~-----~Ls~~~Gd~i~v~~~~~~~~ww~~~~------~g~~G~~P~~~v~~ 54 (55)
T PF07653_consen 1 YYRAIFDYVAEDPD-----ELSFKKGDVIEVLGEKDDDGWWLGEN------NGRRGWFPSSYVEE 54 (55)
T ss_dssp EEEESSSBESSSTT-----B-EB-TTEEEEEEEEECSTSEEEEEE------TTEEEEEEGGGEEE
T ss_pred CEEEeEEECCCCCC-----ceEEecCCEEEEEEeecCCCEEEEEE------CCcEEEEcHHHEEE
Confidence 57899999999999 9999999999999 888889999998 47889999998754
No 7
>KOG2199|consensus
Probab=99.07 E-value=3.5e-11 Score=109.96 Aligned_cols=52 Identities=38% Similarity=0.809 Sum_probs=48.7
Q ss_pred EEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 19 ~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
.|||||||++.+++ +|+|++||||+|++..+++||.|.. .+..|+||++|+.
T Consensus 217 kVRALYDFeAaE~n-----ELsFkaGdIItVLd~s~~~WWKG~~------~~~~GlFPsnfVT 268 (462)
T KOG2199|consen 217 KVRALYDFEAAEDN-----ELSFKAGDIITVLDDSDPNWWKGEN------HRGIGLFPSNFVT 268 (462)
T ss_pred hhhhhhcccccCCC-----ccceecCcEEEEcccCCcchhcccc------CCcccccchhhhh
Confidence 58999999999999 9999999999999999999999998 4678999999985
No 8
>KOG4792|consensus
Probab=98.99 E-value=2.5e-10 Score=98.18 Aligned_cols=74 Identities=28% Similarity=0.664 Sum_probs=63.4
Q ss_pred cceEeeeeecCC------------------CceeEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcC
Q psy10225 3 QFYIVNVILIST------------------HLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVL 64 (207)
Q Consensus 3 ~~~~~~~l~~~~------------------~~s~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~ 64 (207)
.||++++|.+++ ....|+||+|||.+.... +|.|++|++|.|+++....||.|+..
T Consensus 92 ~fykihyLdtttLi~p~~r~~~~~~~~~~~~~~~~vr~~fdF~G~dee-----DLPFkkGeiL~I~~K~eeqWW~Arns- 165 (293)
T KOG4792|consen 92 EFYKIHYLDTTTLIEPAKRSRQGSGVILRQEEAEYVRALFDFNGNDEE-----DLPFKKGEILRIRDKPEEQWWNARNS- 165 (293)
T ss_pred hheeEeeeccccccccccccccccCcccchhhhhheeeeeccCCCccc-----cCCcccCcEEEEecCcHHHhhhhhcc-
Confidence 588999887765 113589999999999999 99999999999999999999999984
Q ss_pred CCCCCceeeeecCChhHHhHhh
Q psy10225 65 PSGDEQGIGIVPSKKRWERKQR 86 (207)
Q Consensus 65 ~~~~~~~~G~IPS~~~~E~~~~ 86 (207)
.|..|+||.+|++.....
T Consensus 166 ----~Gk~GmIPvpYVe~~~~~ 183 (293)
T KOG4792|consen 166 ----EGKRGMIPVPYVEKYRPA 183 (293)
T ss_pred ----CCcccceechHHHhhhhh
Confidence 799999999998765543
No 9
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=98.96 E-value=1.5e-09 Score=70.55 Aligned_cols=52 Identities=42% Similarity=0.742 Sum_probs=46.4
Q ss_pred EEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 20 SRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 20 vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
++|+|+|.+..+. +|+|.+||++.|++..+.+||.++..+ ++.|+||..++.
T Consensus 2 ~~a~~~~~~~~~~-----~l~~~~Gd~v~v~~~~~~~w~~~~~~~-----~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPD-----ELSFKKGDIIEVLEKSDDGWWEGRLLG-----GKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCC-----CCCCCCCCEEEEEEcCCCCeEEEEECC-----CCEEEEccccCc
Confidence 5799999999999 999999999999998889999999853 389999998864
No 10
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=98.95 E-value=1.9e-09 Score=70.77 Aligned_cols=54 Identities=39% Similarity=0.664 Sum_probs=47.9
Q ss_pred eEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 18 SFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 18 ~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
.+++|+|+|.+..+. +|+|++||++.|++..+.+||.++.. .++.|+||.+|+.
T Consensus 3 ~~~~a~~~~~~~~~~-----~l~~~~Gd~v~v~~~~~~~w~~~~~~-----~~~~G~vP~~~v~ 56 (58)
T smart00326 3 PQVRALYDYTAQDPD-----ELSFKKGDIITVLEKSDDGWWKGRLG-----RGKEGLFPSNYVE 56 (58)
T ss_pred cEEEEeeeeCCCCCC-----CCCCCCCCEEEEEEcCCCCeEEEEeC-----CCCEEEEchHHEE
Confidence 467899999999888 99999999999999888999999984 3789999998853
No 11
>KOG3812|consensus
Probab=98.92 E-value=6.6e-10 Score=100.30 Aligned_cols=68 Identities=28% Similarity=0.511 Sum_probs=60.3
Q ss_pred eeEEEEeccCCCCCCCCCCCC--CccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhHHhHhhh
Q psy10225 17 FSFSRALFDYDPTKDDGLPSR--GLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRWERKQRA 87 (207)
Q Consensus 17 s~~vRAlfdY~~~~d~~~P~~--eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~E~~~~~ 87 (207)
.|-|+|+.+|++.-++..|.+ +++|+..|+|+|.++.+++||.+|.+.+ .++.||||+.-+.|..+..
T Consensus 58 AFAV~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVke---g~e~gFiPsp~rLen~r~~ 127 (475)
T KOG3812|consen 58 AFAVRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKE---GCEIGFIPSPVRLENIRLQ 127 (475)
T ss_pred eEEEEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhc---CCccccccchHHHHHHHhh
Confidence 356899999999999999998 9999999999999999999999999974 6789999999988865443
No 12
>KOG2070|consensus
Probab=98.87 E-value=2.2e-09 Score=100.54 Aligned_cols=59 Identities=29% Similarity=0.532 Sum_probs=54.4
Q ss_pred CceeEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhHHhH
Q psy10225 15 HLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRWERK 84 (207)
Q Consensus 15 ~~s~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~E~~ 84 (207)
+..+.+||-|.|.+.+.+ +|+|.||||++|....++|||.|.. +|+.||+|++|+.|..
T Consensus 15 ~~pLvvrAkf~F~gsNnD-----ELsf~KgDvItVTq~eeGGWWEGTl------ng~TGWFPsnYV~eik 73 (661)
T KOG2070|consen 15 NNPLVVRAKFNFQGSNND-----ELSFSKGDVITVTQVEEGGWWEGTL------NGRTGWFPSNYVREIK 73 (661)
T ss_pred CCceEEEEEeecccCCCc-----eeccccCCEEEEEEeccCcceeccc------cCccCccchHHHHHHh
Confidence 345689999999999999 9999999999999999999999998 7899999999998865
No 13
>KOG1029|consensus
Probab=98.83 E-value=1.3e-09 Score=106.26 Aligned_cols=53 Identities=36% Similarity=0.721 Sum_probs=49.6
Q ss_pred eEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 18 SFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 18 ~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
.-|.|+|||.++.++ +|+|.+|||+-|+++++++||.+.. +|..|+|||||+.
T Consensus 1054 ~qviamYdY~AqndD-----ELsF~kgdiI~VlnkdepeWW~Ge~------ng~sGLFPSNYV~ 1106 (1118)
T KOG1029|consen 1054 CQVIAMYDYEAQNDD-----ELSFKKGDIINVLNKDEPEWWSGER------NGKSGLFPSNYVQ 1106 (1118)
T ss_pred ceeEEeeccccCCcc-----cccccCCCEEEecCCCChhhhcccc------cCccccCcccccc
Confidence 347799999999999 9999999999999999999999998 6899999999985
No 14
>KOG1118|consensus
Probab=98.79 E-value=1.8e-09 Score=96.18 Aligned_cols=57 Identities=26% Similarity=0.563 Sum_probs=51.4
Q ss_pred CCceeEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 14 THLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 14 ~~~s~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
+.+..++||+|||+|++.. +|.|+.||+|.|+++.|++||.|... |..|++|.+|+.
T Consensus 303 ~~~~p~cralYdFepenEg-----EL~fkeGDlI~l~~QIdenWyeG~~~------g~sG~FPvnYv~ 359 (366)
T KOG1118|consen 303 QMDQPCCRALYDFEPENEG-----ELDFKEGDLITLTNQIDENWYEGEKH------GESGMFPVNYVE 359 (366)
T ss_pred cccchhheeeeccCCCCCC-----ccCcccCceeeehhhcCcchhhheec------CccCccccceeE
Confidence 3445689999999999999 99999999999999999999999995 668999999964
No 15
>KOG4226|consensus
Probab=98.57 E-value=1.8e-08 Score=88.87 Aligned_cols=54 Identities=28% Similarity=0.672 Sum_probs=49.2
Q ss_pred EEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEe--cCCCeeEEEEcCCCCCCceeeeecCChhHH
Q psy10225 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNA--SDDEWWQARRVLPSGDEQGIGIVPSKKRWE 82 (207)
Q Consensus 19 ~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~--~d~~WW~ar~~~~~~~~~~~G~IPS~~~~E 82 (207)
.|.|||.|++..+. +|+|++||.+.|+++ .|++||.++.. .|+.|++|.+|+.+
T Consensus 193 vVvaLYsFsssnde-----ELsFeKGerleivd~Pe~DPdWwkarn~-----~G~vGLVPrNYv~v 248 (379)
T KOG4226|consen 193 VVVALYSFSSSNDE-----ELSFEKGERLEIVDKPENDPDWWKARNA-----RGQVGLVPRNYVVV 248 (379)
T ss_pred EEEEEecccCCChh-----hcccccCceeEeccCCCCCchHHhhccc-----CCccceeecceEEE
Confidence 36799999999999 999999999999997 78999999985 69999999999764
No 16
>KOG0162|consensus
Probab=98.41 E-value=1.6e-07 Score=91.62 Aligned_cols=53 Identities=28% Similarity=0.584 Sum_probs=48.7
Q ss_pred EEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhHH
Q psy10225 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRWE 82 (207)
Q Consensus 19 ~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~E 82 (207)
.++|+|||.++..+ +|+|++||++.|+.++-.|||+|+. +++.||+|.+|+.|
T Consensus 1053 ~~~A~Y~y~gq~~d-----Els~~~~diIei~~edpSGWw~gk~------~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1053 VCEALYDYPGQDVD-----ELSFKKGDIIEIMREDPSGWWLGKL------NGKEGLFPGNYVTE 1105 (1106)
T ss_pred ceeeeccCCCCCcc-----cccccCCCEEEEeccCCCcchhhcc------CCcccccccccccc
Confidence 57799999999999 9999999999999999999999996 68899999999754
No 17
>KOG4225|consensus
Probab=98.38 E-value=2.6e-07 Score=85.66 Aligned_cols=52 Identities=31% Similarity=0.659 Sum_probs=49.0
Q ss_pred EEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 19 ~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
-.||+|+|++++.. +|+|++|||++|+.+.|.+|..+.+ .|+.|++|.+|++
T Consensus 232 ~aralf~F~~qt~k-----EL~~~kGDIVyI~rkvD~nWyeGEh------hGr~GifP~sYvE 283 (489)
T KOG4225|consen 232 AARALFDFEAQTPK-----ELPFNKGDIVYILRKVDQNWYEGEH------HGRVGIFPASYVE 283 (489)
T ss_pred hhhheeccccCCcc-----ccccCCCCEEEEEeeccCceeeeee------cceecceechhee
Confidence 47899999999999 9999999999999999999999998 6899999999974
No 18
>KOG4348|consensus
Probab=98.29 E-value=5.4e-07 Score=83.84 Aligned_cols=56 Identities=29% Similarity=0.576 Sum_probs=50.0
Q ss_pred CceeEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEe--cCCCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 15 HLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNA--SDDEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 15 ~~s~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~--~d~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
+..-|+|++|-|+++.++ +|.|+.|||++.+.+ .|.|||.+.. +|++|++|-|++.
T Consensus 259 KtKeycrv~F~Ye~qndD-----ELt~KEgdil~lItK~cgdaGWweGEL------nGk~GvFPDNFv~ 316 (627)
T KOG4348|consen 259 KTKEYCRVKFVYEPQNDD-----ELTLKEGDILILITKNCGDAGWWEGEL------NGKKGVFPDNFVE 316 (627)
T ss_pred hhhhheeeeeeecCCCcc-----ceeeccccEEEEecccccccceeeeee------cCccccCCchhhh
Confidence 344589999999999999 999999999999876 6889999998 7899999999964
No 19
>KOG2856|consensus
Probab=98.29 E-value=2.4e-07 Score=84.47 Aligned_cols=56 Identities=29% Similarity=0.473 Sum_probs=48.1
Q ss_pred ceeEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEe-cCCCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 16 LFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNA-SDDEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 16 ~s~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~-~d~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
+-+.|||||||.+++.+ +|+|+.||.|..+.. +..||.++|.. .|+.|++|.+|+.
T Consensus 413 ~~v~vraLYDY~gqE~D-----ElsfkaGd~l~kl~eeDeqGWC~Grl~-----~G~vGLyPAnYVe 469 (472)
T KOG2856|consen 413 DFVRVRALYDYAGQEGD-----ELSFKAGDELEKLEEEDEQGWCKGRLD-----SGRVGLYPANYVE 469 (472)
T ss_pred ceeeEEeeeccCccccc-----chhhccccHhhhcCCcccccccccccc-----CCcccccchhhhh
Confidence 33678999999999999 999999999998776 45689888873 6999999999974
No 20
>KOG4226|consensus
Probab=98.29 E-value=6e-07 Score=79.41 Aligned_cols=53 Identities=26% Similarity=0.503 Sum_probs=48.5
Q ss_pred EEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhHHhH
Q psy10225 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRWERK 84 (207)
Q Consensus 21 RAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~E~~ 84 (207)
...|.|.++.++ +|++.+|+.+.|+++...|||++.. +++.||+||+|+.|..
T Consensus 111 vVKf~Y~a~~eD-----ELsLtKGtrv~vmEKssDGWWrG~~------ng~VGWFPSNYv~E~~ 163 (379)
T KOG4226|consen 111 VVKFNYVAERED-----ELSLTKGTRVTVMEKSSDGWWRGSY------NGQVGWFPSNYVTEEV 163 (379)
T ss_pred EEEEeecccccc-----ccccccCcEEEEEEeccCcceeccc------CCeeccccccceehhc
Confidence 346899999999 9999999999999999999999987 6899999999998864
No 21
>KOG2996|consensus
Probab=98.23 E-value=8.6e-07 Score=84.93 Aligned_cols=53 Identities=23% Similarity=0.486 Sum_probs=45.7
Q ss_pred EEEeccCCCCCCCCCCCCCccCCCCCEEEEEEe--cCCCeeEEEEcCCCCCCceeeeecCChhHHh
Q psy10225 20 SRALFDYDPTKDDGLPSRGLPFHYGDILHVTNA--SDDEWWQARRVLPSGDEQGIGIVPSKKRWER 83 (207)
Q Consensus 20 vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~--~d~~WW~ar~~~~~~~~~~~G~IPS~~~~E~ 83 (207)
..|-|||-+.... +|||+.|||+.|.++ .|.|||.|.. +|+.||+|++|+.|.
T Consensus 808 AvarYdf~ard~~-----eLSlk~GDvV~i~~k~g~d~GWWkGev------ngrvGwFPstYVee~ 862 (865)
T KOG2996|consen 808 AVARYDFCARDMR-----ELSLKEGDVVKIYDKVGEDQGWWKGEV------NGRVGWFPSTYVEED 862 (865)
T ss_pred eeeccccCCCchh-----hcccccCCEEEEehhccccCceeccee------cCccccccccccccc
Confidence 4567888777777 999999999999987 5689999998 789999999998764
No 22
>KOG0515|consensus
Probab=98.10 E-value=1.3e-06 Score=82.97 Aligned_cols=51 Identities=39% Similarity=0.621 Sum_probs=44.9
Q ss_pred EEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecC---CCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 20 SRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASD---DEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 20 vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d---~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
|-|+|||+++.++ +|+|..||-++|+..+| -+||.|+. +++.|++|.+|+.
T Consensus 686 vYAlwdYeaqf~D-----ELsf~eGd~lTvirr~d~~eteWWwa~l------ng~eGyVPRnylg 739 (752)
T KOG0515|consen 686 VYALWDYEAQFED-----ELSFDEGDELTVIRRDDEVETEWWWARL------NGEEGYVPRNYLG 739 (752)
T ss_pred eEEeecccccccc-----cccccCCceeEEEecCCcchhhhhhHhh------cCcccccchhhhh
Confidence 4479999999999 99999999999998754 47999996 6889999999975
No 23
>KOG3601|consensus
Probab=98.09 E-value=1.8e-06 Score=73.53 Aligned_cols=56 Identities=25% Similarity=0.528 Sum_probs=51.4
Q ss_pred CceeEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 15 HLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 15 ~~s~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
....|+.|+||++++.+. +|.|++||+++|++..++.||.|... +..|++|+.|+.
T Consensus 161 ~~~~yqQa~~df~~~pp~-----ql~f~~gq~~~v~~~ss~~ww~Gs~l------g~agiFpagyv~ 216 (222)
T KOG3601|consen 161 PTNYYQQALYDFQPQPPG-----QLAFRRGQQIQVLDSSSPFWWFGSKL------GRAGIFPAGYVA 216 (222)
T ss_pred ccchhhhhcCCCCCCCch-----hhccccCCcceeecCCCcchhhcccc------CceeeecCcccc
Confidence 566789999999999999 99999999999999999999999984 789999999864
No 24
>KOG4225|consensus
Probab=98.03 E-value=4e-06 Score=77.92 Aligned_cols=58 Identities=28% Similarity=0.445 Sum_probs=50.4
Q ss_pred CceeEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 15 HLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 15 ~~s~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
++.+-+||||.|.++.++ +|.|..|||+.|+++.|.||..|.... .+..|.+|.+|+.
T Consensus 430 ~~~l~yrAly~Y~pqned-----eLEl~egDii~VmeKcddgWfvGts~r----tg~fGtFPgnyV~ 487 (489)
T KOG4225|consen 430 SEPLKYRALYSYRPQNED-----ELELREGDIIDVMEKCDDGWFVGTSRR----TGKFGTFPGNYVK 487 (489)
T ss_pred CCcccceeccccCCCCch-----hheeccCCEEeeeecccCcceecccee----cccccccCccccc
Confidence 445568999999999999 999999999999999999999984332 6889999999964
No 25
>KOG1264|consensus
Probab=98.03 E-value=3e-06 Score=83.75 Aligned_cols=56 Identities=25% Similarity=0.430 Sum_probs=50.8
Q ss_pred eEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhHHh
Q psy10225 18 SFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRWER 83 (207)
Q Consensus 18 ~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~E~ 83 (207)
+-++|||||.+..++ +|+|-+|-|++++.+..++||+|... ..-.+++||+|+.|.
T Consensus 775 vt~kAL~~Yka~r~D-----ELSFpk~aiItnv~keeg~wWrGdYG-----g~iq~wfPsnyVeei 830 (1267)
T KOG1264|consen 775 VTVKALYDYKAKRSD-----ELSFPKGAIITNVSKEEGGWWRGDYG-----GRIQQWFPSNYVEEI 830 (1267)
T ss_pred hhhhhhhccccCCcc-----cccccccceeEeeeccCCceeecccc-----cceeeeccHHHhhhh
Confidence 568999999999999 99999999999999999999999985 356799999999874
No 26
>KOG3875|consensus
Probab=98.01 E-value=9e-07 Score=79.24 Aligned_cols=57 Identities=23% Similarity=0.355 Sum_probs=48.6
Q ss_pred ceeEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEec-----CCCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 16 LFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNAS-----DDEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 16 ~s~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~-----d~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
+..+.||+|||.+..+. ||+|++||+|.|..+. +.+||+.+..+ .+..|+||.+|+.
T Consensus 267 p~~~arA~YdF~a~np~-----ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~d----g~~tG~iP~NYvk 328 (362)
T KOG3875|consen 267 PHEFARALYDFVARNPV-----ELSLKKGDMLAIASKEDQQGVRCEGWLLATRD----GGTTGLIPINYVK 328 (362)
T ss_pred hHHHHHHHhhhhcCCHH-----HhhhhcCchhhcccccccCCCCCcceeeeecc----CCeeeeeehhhhh
Confidence 33678999999999998 9999999999997763 45699999874 5789999999964
No 27
>KOG4348|consensus
Probab=97.96 E-value=1.4e-06 Score=81.15 Aligned_cols=53 Identities=28% Similarity=0.650 Sum_probs=48.6
Q ss_pred EEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhHHh
Q psy10225 20 SRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRWER 83 (207)
Q Consensus 20 vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~E~ 83 (207)
+.+.|.|.++.++ +|.|+.|||+.|+.....|||.+.. ++..|++|+|++-|.
T Consensus 103 c~v~f~Y~pqndD-----ELelkVGDiIeli~eVEeGWw~G~L------ngk~GmFPsNFVkel 155 (627)
T KOG4348|consen 103 CVVTFAYSPQNDD-----ELELKVGDIIELISEVEEGWWKGKL------NGKVGMFPSNFVKEL 155 (627)
T ss_pred EEEEEeecCCCCc-----eeeeeeccHHHhhhHhhhhhhhcee------cCcccccchhhceec
Confidence 4478999999999 9999999999999998999999998 689999999998763
No 28
>KOG3655|consensus
Probab=97.83 E-value=5.9e-06 Score=77.38 Aligned_cols=53 Identities=25% Similarity=0.639 Sum_probs=48.5
Q ss_pred eEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChh
Q psy10225 18 SFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKR 80 (207)
Q Consensus 18 ~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~ 80 (207)
...+|+|||++..+. +++|..+|++.+++.-|.+||++..- .|..|++|+||+
T Consensus 428 q~A~A~~dyqAAddt-----Eisf~p~d~it~Id~vdegww~g~~p-----dG~~glfPaNyV 480 (484)
T KOG3655|consen 428 QTARALYDYQAADDT-----EISFDPPDAITLIDQVDEGWWTGQGP-----DGEVGLFPANYV 480 (484)
T ss_pred CCccccccccccCCc-----ccccCCccccccccccCCccccccCC-----CCCcCccccccc
Confidence 457899999999999 99999999999999999999999873 578999999996
No 29
>KOG2546|consensus
Probab=97.74 E-value=1.5e-05 Score=73.98 Aligned_cols=51 Identities=33% Similarity=0.599 Sum_probs=47.7
Q ss_pred EEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 20 SRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 20 vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
|+++|||.+..++ ||+|..|-||+|+.+.|.+||.+.. ++..|+||.||+.
T Consensus 426 Vv~iydy~~~Kdd-----eLsf~E~ailyv~kknddgw~EgV~------~~VTglFpgnyve 476 (483)
T KOG2546|consen 426 VVAIYDYTADKDD-----ELSFAEGAILYVLKKNDDGWYEGVQ------DGVTGLFPGNYVE 476 (483)
T ss_pred HHhhccccccccc-----ccccccccEEEEEEecCCcchhhee------cCcceeccCcccc
Confidence 7799999999999 9999999999999999999999997 5789999999964
No 30
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.69 E-value=1.2e-06 Score=71.75 Aligned_cols=68 Identities=19% Similarity=0.186 Sum_probs=55.7
Q ss_pred ccceEEccCC---cccccccccCCccCCcccccCCCcchhH-----------------HHHhhccceEEEE-------EE
Q psy10225 122 IEKSVALGLT---RGLKAGQMTSNFKEHKYLDLDVPIGTIR-----------------RFQYGLKKIIQMF-------LY 174 (207)
Q Consensus 122 ~RPVvilgp~---~dv~~~~L~~e~P~~~f~~~~~p~~t~~-----------------~~~~~~~~~~~~~-------~~ 174 (207)
.||+|++||. ++-..++|.+++|+ +| +.++++|||. .|++.++..-|+. +|
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~-~~-~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~Y 79 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPD-KF-GRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYY 79 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTT-TE-EEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccc-cc-ccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhh
Confidence 5899999999 67777899999999 99 9999999986 5555555555555 56
Q ss_pred EEEEEEE-EEeccccccc
Q psy10225 175 SVTVISI-AICLKNKHNE 191 (207)
Q Consensus 175 ~~~v~~~-~~~~~~~h~~ 191 (207)
.|+.++| .+.+++.||=
T Consensus 80 Gt~~~~i~~~~~~gk~~i 97 (183)
T PF00625_consen 80 GTSKSAIDKVLEEGKHCI 97 (183)
T ss_dssp EEEHHHHHHHHHTTTEEE
T ss_pred hhccchhhHhhhcCCcEE
Confidence 9999999 9999999963
No 31
>KOG1843|consensus
Probab=97.65 E-value=2e-05 Score=72.92 Aligned_cols=52 Identities=29% Similarity=0.634 Sum_probs=46.2
Q ss_pred EEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecC--CCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASD--DEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 19 ~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d--~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
.+.|+|+|..+.+. +|+|++||||.++++.+ ..||.++. ++..|++|.+|+.
T Consensus 418 ~a~a~ysfage~~G-----Dl~f~kgDii~il~ks~s~~dwwtgr~------~~~egifPanyv~ 471 (473)
T KOG1843|consen 418 IATALYSFAGEQPG-----DLSFQKGDIITILKKSDSANDWWTGRG------NGYEGIFPANYVS 471 (473)
T ss_pred eeeeeehhccCCCC-----CcccccCceEEEecCCcchhhHHHhhc------cccccccccceec
Confidence 46799999999999 99999999999999844 57999998 6899999999963
No 32
>KOG0197|consensus
Probab=97.59 E-value=1.7e-05 Score=74.91 Aligned_cols=56 Identities=29% Similarity=0.601 Sum_probs=50.2
Q ss_pred EEEEeccCCCCCCCCCCCCCccCCCCCE-EEEEEecCCCeeEEEEcCCCCCCceeeeecCChhHHh
Q psy10225 19 FSRALFDYDPTKDDGLPSRGLPFHYGDI-LHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRWER 83 (207)
Q Consensus 19 ~vRAlfdY~~~~d~~~P~~eLsF~kGDi-L~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~E~ 83 (207)
.+.|+|||.+..+. +|+|.+||. ++++++.+..||.++... .+..|+||+||+++.
T Consensus 13 ~~valyd~~s~~~~-----dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~----~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 13 IVVALYDYASRTPE-----DLSFRKGDVVLILLETTNGDWWRARSLQ----LGQEGYIPSNYVARN 69 (468)
T ss_pred eEEEeccccCCCcc-----ccccccCceEEEeeccCChhHHHHHHhh----cCCCCcCcCceeecc
Confidence 56699999999998 999999999 999999999999999864 578899999999863
No 33
>KOG1029|consensus
Probab=97.45 E-value=0.00011 Score=72.62 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=47.6
Q ss_pred ceeEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEe--cCCCeeEEEEcCCCCCCceeeeecCChhHH
Q psy10225 16 LFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNA--SDDEWWQARRVLPSGDEQGIGIVPSKKRWE 82 (207)
Q Consensus 16 ~s~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~--~d~~WW~ar~~~~~~~~~~~G~IPS~~~~E 82 (207)
+-++.||+|.|++...+ +++|..|||+.|... ..+||..+.. ++..||||.+|+..
T Consensus 692 ~~vkyrAly~FeaRs~d-----Eisf~pGDII~V~esq~aEPGWlaGel------~gktGWFPenyvEk 749 (1118)
T KOG1029|consen 692 DTVKYRALYPFEARSHD-----EISFEPGDIIIVFESQAAEPGWLAGEL------RGKTGWFPENYVEK 749 (1118)
T ss_pred ceEEEeeecccccCCcc-----cccccCCCEEEEehhccCCccccccee------ccccCcCcHHHHhh
Confidence 45689999999999999 999999999988764 5678876666 68899999999754
No 34
>KOG3632|consensus
Probab=97.09 E-value=0.00048 Score=69.67 Aligned_cols=56 Identities=34% Similarity=0.603 Sum_probs=45.0
Q ss_pred EEEeccCCCCCCCCCCCC-----CccCCCCCEEEEEEecC-CCeeEEEEcCCCCCCceeeeecCChhHHh
Q psy10225 20 SRALFDYDPTKDDGLPSR-----GLPFHYGDILHVTNASD-DEWWQARRVLPSGDEQGIGIVPSKKRWER 83 (207)
Q Consensus 20 vRAlfdY~~~~d~~~P~~-----eLsF~kGDiL~Vl~~~d-~~WW~ar~~~~~~~~~~~G~IPS~~~~E~ 83 (207)
+.|+|||++-.-+ |+. +|+|++|+||.|....| .+.+++.. +++.|+||+|.++|.
T Consensus 1141 fVAlfDYDpl~MS--pNpDAaEeELpFregqIikV~GDkDadgFY~GE~------ngr~GlIPcNmvae~ 1202 (1335)
T KOG3632|consen 1141 FVALFDYDPLQMS--PNPDAAEEELPFREGQIIKVLGDKDADGFYMGEL------NGRRGLIPCNMVAEQ 1202 (1335)
T ss_pred eEeeeccCccccC--CCCChhhhccccccCcEEEEeccccccceeeccc------ccccccccccccccc
Confidence 4499999986544 432 99999999999988654 46777776 789999999999884
No 35
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.08 E-value=3.4e-05 Score=63.45 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=53.8
Q ss_pred ccceEEccCC---cccccccccCCccCCcccccCCCcchhH-----------------HHHhhccceEEEE-------EE
Q psy10225 122 IEKSVALGLT---RGLKAGQMTSNFKEHKYLDLDVPIGTIR-----------------RFQYGLKKIIQMF-------LY 174 (207)
Q Consensus 122 ~RPVvilgp~---~dv~~~~L~~e~P~~~f~~~~~p~~t~~-----------------~~~~~~~~~~~~~-------~~ 174 (207)
.||++++||. ++-..++|.+++|+ .| ..++++||+. .|++.++..-|+. +|
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~-~~-~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~Y 79 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPD-AF-ERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYY 79 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCc-ce-EeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCc
Confidence 5899999999 77777899999999 89 8888877665 5666666666655 55
Q ss_pred EEEEEEE-EEecccccc
Q psy10225 175 SVTVISI-AICLKNKHN 190 (207)
Q Consensus 175 ~~~v~~~-~~~~~~~h~ 190 (207)
.|++.+| ++..+++||
T Consensus 80 Gt~~~~i~~~~~~~~~~ 96 (184)
T smart00072 80 GTSKETIRQVAEQGKHC 96 (184)
T ss_pred ccCHHHHHHHHHcCCeE
Confidence 9999999 888888884
No 36
>KOG4278|consensus
Probab=97.02 E-value=0.00064 Score=66.82 Aligned_cols=53 Identities=32% Similarity=0.483 Sum_probs=44.2
Q ss_pred eeEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEe-cCCCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 17 FSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNA-SDDEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 17 s~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~-~d~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
.+|| |||||.+..+. .|+..+||.|+|+.- .+++|..++.. +|+ ||+||||..
T Consensus 91 NLFV-ALYDFvasGdn-----tLSitKGeklRvLGYN~NgEWcEartK-----NGq-GWVPSNyIt 144 (1157)
T KOG4278|consen 91 NLFV-ALYDFVASGDN-----TLSITKGEKLRVLGYNKNGEWCEARTK-----NGQ-GWVPSNYIT 144 (1157)
T ss_pred ceeE-eeeeeeccccc-----eeeeecCceEEEeeecCCCcceeeccc-----CCC-ccccccccc
Confidence 3444 99999999999 999999999999986 45678888852 455 999999974
No 37
>KOG2222|consensus
Probab=96.81 E-value=0.00027 Score=67.10 Aligned_cols=52 Identities=27% Similarity=0.424 Sum_probs=47.7
Q ss_pred EEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 19 ~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
..+|+.||....++ +|.|++.||++|+.+.|...|.+.. +|-+||+|.+++.
T Consensus 550 rakal~df~r~ddd-----elgfrkndiitiisekdehcwvgel------nglrgwfpakfve 601 (848)
T KOG2222|consen 550 RAKALHDFAREDDD-----ELGFRKNDIITIISEKDEHCWVGEL------NGLRGWFPAKFVE 601 (848)
T ss_pred HHHHHhhhhhcccc-----ccccccccEEEEeecCCcceeeecc------ccccccchHHHHH
Confidence 46789999999999 9999999999999999999999887 6889999999975
No 38
>KOG1702|consensus
Probab=96.68 E-value=0.0012 Score=56.53 Aligned_cols=53 Identities=26% Similarity=0.466 Sum_probs=45.4
Q ss_pred EEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChh
Q psy10225 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKR 80 (207)
Q Consensus 19 ~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~ 80 (207)
..||.|||.++..+ +++|.-||-+.-+...|.||..+.... .|..|..|.||.
T Consensus 209 tyra~ydysaqded-----evsF~dgd~ivnvq~iddGWmygtv~r----tg~tGmlpaNyi 261 (264)
T KOG1702|consen 209 TYRAFYDYSAQDED-----EVSFVDGDYIVNVQSIDDGWMYGTVVR----TGWTGMLPANYI 261 (264)
T ss_pred cchhhccCcccCcc-----eeEEecCCeEEEEEeccCCceeeEEEe----ccccCCCchhhe
Confidence 47899999999999 999999999987888888886666553 688999999995
No 39
>KOG3771|consensus
Probab=96.61 E-value=0.00096 Score=62.75 Aligned_cols=59 Identities=19% Similarity=0.126 Sum_probs=46.2
Q ss_pred ecCCCceeEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEec-CCCeeEEEEcCCCCCCceeeeecCChh
Q psy10225 11 LISTHLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNAS-DDEWWQARRVLPSGDEQGIGIVPSKKR 80 (207)
Q Consensus 11 ~~~~~~s~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~-d~~WW~ar~~~~~~~~~~~G~IPS~~~ 80 (207)
.-.|+....|.++|||.++..+ +|+|+.||+|.|+... ..+||.||+++ ..+-.|.+++
T Consensus 394 ~~~p~~~~~v~a~~dy~a~~~d-----eLsf~~gd~i~vi~s~~~~e~~eg~~mg------~ke~~~~~~~ 453 (460)
T KOG3771|consen 394 DLPPGFLYKVKALHDYAAQDTD-----ELSFEAGDVILVIPSDNPEEQDEGWLMG------VKESDWNGLF 453 (460)
T ss_pred cCCCCCccceeccccccccccc-----cccccCCCEEEEecCCCccchhhHHHhh------hcccccccce
Confidence 3455666789999999999999 9999999999999864 45799999964 4444445554
No 40
>KOG4575|consensus
Probab=96.47 E-value=0.0034 Score=61.23 Aligned_cols=58 Identities=26% Similarity=0.505 Sum_probs=49.6
Q ss_pred CCceeEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChh
Q psy10225 14 THLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKR 80 (207)
Q Consensus 14 ~~~s~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~ 80 (207)
.+..+.+||+|-+.++..+ +|.|..||++.++.-.|+-||...+.. +...|++|+|++
T Consensus 5 ~q~p~~vrA~y~w~ge~eG-----dl~f~egDlie~trI~dgkwwi~lhrN----k~~~g~fpsNFv 62 (874)
T KOG4575|consen 5 KQLPCMVRALYAWPGEREG-----DLKFTEGDLIEQTRIEDGKWWILLHRN----KDEDGLFPSNFV 62 (874)
T ss_pred cCCCceEEeeccCCCCccc-----ccceecccceeEEeeccceeeeeeeec----ccccccCcccce
Confidence 3456789999999999999 999999999999988888888877763 456799999987
No 41
>KOG3557|consensus
Probab=96.41 E-value=0.00086 Score=65.23 Aligned_cols=55 Identities=22% Similarity=0.497 Sum_probs=48.3
Q ss_pred eeEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhHH
Q psy10225 17 FSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRWE 82 (207)
Q Consensus 17 s~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~E 82 (207)
..++..+|||.+.... +|+..+||+|.|++. ...||.++.. .|+.|++|++.+..
T Consensus 500 ~k~~~~~Ydf~arNs~-----ELsV~k~E~LEvl~d-~R~WW~~kn~-----~G~~GyvP~nIL~~ 554 (721)
T KOG3557|consen 500 KKWVLVLYDFQARNSS-----ELSVKKGEVLEVLDD-GRKWWKVKNG-----HGRAGYVPSNILAP 554 (721)
T ss_pred ceeeeeehhhhcccch-----hhhhhhhhhhhhhhc-cccceeccCc-----cCCCCCcchhhhcc
Confidence 4488899999999999 999999999999984 4679999985 58899999998765
No 42
>KOG3523|consensus
Probab=96.18 E-value=0.0013 Score=63.70 Aligned_cols=56 Identities=21% Similarity=0.407 Sum_probs=49.5
Q ss_pred EEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhHHhH
Q psy10225 20 SRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRWERK 84 (207)
Q Consensus 20 vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~E~~ 84 (207)
|-+.-.|.+..++ +|+++.+|++.|..+...||..|.++. .|..||||+.|..|.-
T Consensus 611 v~~~~sy~a~q~D-----el~Le~~Dvv~v~~k~~DGWl~GeRl~----Dge~GWFP~~~veeI~ 666 (695)
T KOG3523|consen 611 VQCVHSYKAKQPD-----ELTLELADVVNVLQKTPDGWLEGERLR----DGERGWFPSSYVEEIT 666 (695)
T ss_pred hheeeccccCCCc-----eeeeehhhhhhhhhcCCCccccccccc----cCccCcchHHHHHHhc
Confidence 4456679999999 999999999999999999999999986 6899999999988743
No 43
>KOG3601|consensus
Probab=95.41 E-value=0.0028 Score=54.32 Aligned_cols=48 Identities=29% Similarity=0.457 Sum_probs=40.7
Q ss_pred EeccCCCCCCCCCCCCCccCCCCCEEEEEEe-cCCCeeEEEEcCCCCCCceeeeecCChh
Q psy10225 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNA-SDDEWWQARRVLPSGDEQGIGIVPSKKR 80 (207)
Q Consensus 22 AlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~-~d~~WW~ar~~~~~~~~~~~G~IPS~~~ 80 (207)
+++++.+...+ ||+|.+||.|.+++. ++.+|..+.. .+..|+||.++.
T Consensus 5 a~n~f~a~i~d-----ELsFlkg~~lk~l~~~d~~nw~~ael------~g~~g~~P~Nai 53 (222)
T KOG3601|consen 5 AKNDFLAGIRD-----ELSFLKGDNLKILNMEDDINWYKAEL------DGPEGFIPKNAI 53 (222)
T ss_pred hhhhhhhcCcc-----cceeecCCceEecchHHhhhhhhHhh------cCccccCccccc
Confidence 67888888888 999999999999886 4557887776 577899999997
No 44
>KOG3775|consensus
Probab=94.68 E-value=0.012 Score=54.36 Aligned_cols=55 Identities=29% Similarity=0.489 Sum_probs=49.5
Q ss_pred EEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhHHh
Q psy10225 20 SRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRWER 83 (207)
Q Consensus 20 vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~E~ 83 (207)
=|++|.|-|..++ +|-+..||-++|-.+.+..|..+..+. .|+.|++|+.|..|.
T Consensus 265 HR~~~rFvPRHpD-----ELeLEIgDav~Ve~eadD~W~~G~NlR----TG~~GIFPA~ya~ev 319 (482)
T KOG3775|consen 265 HRAVFRFVPRHPD-----ELELEIGDAVLVEAEADDFWFEGFNLR----TGERGIFPAFYAHEV 319 (482)
T ss_pred hhhhhhccCCCcc-----eeeeecCCeeEeeecccchhhcccccc----ccccccccceeEEec
Confidence 3778999999999 999999999999999999999999885 799999999998763
No 45
>KOG4792|consensus
Probab=93.85 E-value=0.08 Score=46.28 Aligned_cols=60 Identities=23% Similarity=0.408 Sum_probs=46.1
Q ss_pred cCCCceeEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChh
Q psy10225 12 ISTHLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKR 80 (207)
Q Consensus 12 ~~~~~s~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~ 80 (207)
..+....|.|+.++..|..-+ -.+|.+++||++.|..+.-+|-|.+.. +|+.|.+|-.++
T Consensus 222 l~~~lPa~Arv~q~RVPnAYD---kTaL~levGdiVkVTk~ninGqwegEl------nGk~G~fPfThv 281 (293)
T KOG4792|consen 222 LQQNLPAYARVIQKRVPNAYD---KTALALEVGDIVKVTKKNINGQWEGEL------NGKIGHFPFTHV 281 (293)
T ss_pred cccCCChheeeehhcCCCccC---hhhhhhhcCcEEEEEeeccCceeeeee------cCccccccceeE
Confidence 344455677887776554322 018999999999999999999999998 789999998774
No 46
>KOG4773|consensus
Probab=93.85 E-value=0.011 Score=54.13 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=43.6
Q ss_pred EEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChh
Q psy10225 20 SRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKR 80 (207)
Q Consensus 20 vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~ 80 (207)
.+|++||.+.... +|.|.+||+..++..++.+||.+.. .+-.|++|-.+.
T Consensus 178 ~~a~~df~gns~~-----EL~l~agdV~~~~~r~ek~W~~gk~------R~~~g~yp~sF~ 227 (386)
T KOG4773|consen 178 AEASFDFPGNSKL-----ELNLVAGDVEFLLSRDEKYWLLGKV------RGLTGYYPDSFV 227 (386)
T ss_pred HHhhccCCCCccc-----eeeeehhhHHHHHhhcccceeeeee------ccccccccHHhh
Confidence 3578999998888 9999999999999999999999887 467899988775
No 47
>KOG1451|consensus
Probab=93.55 E-value=0.072 Score=52.02 Aligned_cols=51 Identities=20% Similarity=0.397 Sum_probs=41.0
Q ss_pred EEEeccCCCCCCCCCCCCCccCCCCCEEEEEE-ecCCCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 20 SRALFDYDPTKDDGLPSRGLPFHYGDILHVTN-ASDDEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 20 vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~-~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
++++|.-.+..+. +|+|..|.+|.-+- ....||..|+. +|..|+||++|+.
T Consensus 759 ~k~lyAc~a~h~s-----elsf~~gt~f~nv~~S~e~Gwl~GtL------nGktglip~nyve 810 (812)
T KOG1451|consen 759 VKTLYACTADHHS-----ELSFEPGTIFTNVYESNEDGWLVGTL------NGKTGLIPSNYVE 810 (812)
T ss_pred ccceeccCCCCcc-----cccccCcceeeeecccCCCCceeeec------CCCcccCcccccC
Confidence 4566777777777 99999999997555 56678888887 7899999999963
No 48
>KOG3632|consensus
Probab=93.05 E-value=0.061 Score=55.07 Aligned_cols=55 Identities=33% Similarity=0.474 Sum_probs=42.9
Q ss_pred EEEeccCCCCCCCCCCCC----CccCCCCCEEEEEEecC-CCeeEEEEcCCCCCCceeeeecCChhHH
Q psy10225 20 SRALFDYDPTKDDGLPSR----GLPFHYGDILHVTNASD-DEWWQARRVLPSGDEQGIGIVPSKKRWE 82 (207)
Q Consensus 20 vRAlfdY~~~~d~~~P~~----eLsF~kGDiL~Vl~~~d-~~WW~ar~~~~~~~~~~~G~IPS~~~~E 82 (207)
+.|.|||++++.+ |+. +|.|..|||+.|-...| .+.+.+.. ++++|++|++.+.+
T Consensus 1247 mvaa~dydpqeSS--pg~dgeAelafraGdIitVfg~mdddgfyyGel------ngqkglvpsnfle~ 1306 (1335)
T KOG3632|consen 1247 MVAASDYDPQESS--PGLDGEAELAFRAGDIITVFGKMDDDGFYYGEL------NGQKGLVPSNFLEA 1306 (1335)
T ss_pred hhhhhcCCcccCC--CCcccceeeccccCCeEEeeccccCCccccccc------CCccCccccccccC
Confidence 3478999998755 443 89999999999988754 45555665 68999999998754
No 49
>KOG2528|consensus
Probab=93.02 E-value=0.031 Score=52.68 Aligned_cols=54 Identities=19% Similarity=0.403 Sum_probs=46.5
Q ss_pred EEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEec-CCCeeEEEEcCCCCCCceeeeecCChhHH
Q psy10225 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNAS-DDEWWQARRVLPSGDEQGIGIVPSKKRWE 82 (207)
Q Consensus 19 ~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~-d~~WW~ar~~~~~~~~~~~G~IPS~~~~E 82 (207)
+.|++|||..+... +++...||++.+.+.. -.+||.+.+. .+..|++|..|++-
T Consensus 4 k~RamyDf~~E~~s-----Elsi~~~evl~i~~e~~~~GwLeg~Ns-----rge~GlfPa~yVeV 58 (490)
T KOG2528|consen 4 KARAMYDFQSEGHS-----ELSIWEGEVLSITSEDVIEGWLEGSNS-----RGERGLFPASYVEV 58 (490)
T ss_pred chhhhcchhhcccc-----cccccccceeeecCcccccccccCCCc-----cCccCCCcccceee
Confidence 57999999999888 9999999999998874 4679988874 68999999999653
No 50
>KOG3725|consensus
Probab=92.64 E-value=0.048 Score=48.45 Aligned_cols=52 Identities=27% Similarity=0.445 Sum_probs=44.2
Q ss_pred EEEEeccCCCCCCCCCCCCCccCCCCCEEEEEE--ecCCCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTN--ASDDEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 19 ~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~--~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
..|.+|||++..++ +|++-.+|++.|-. -.|++|..+.+ .+++|-+|-.|..
T Consensus 319 kArVlyDYdAa~s~-----ElslladeiitVyslpGMD~dwlmgEr------GnkkGKvPvtYlE 372 (375)
T KOG3725|consen 319 KARVLYDYDAALSQ-----ELSLLADEIITVYSLPGMDADWLMGER------GNKKGKVPVTYLE 372 (375)
T ss_pred ceeeeecccccchh-----hhhhhhcceEEEEecCCCChHHhhhhh------cCCCCCcchhHHH
Confidence 47889999999999 99999999998855 47889999887 4678999988853
No 51
>KOG0199|consensus
Probab=91.09 E-value=0.22 Score=50.06 Aligned_cols=53 Identities=23% Similarity=0.260 Sum_probs=42.5
Q ss_pred EEEeccCCCCCCCCCCCCCccCCCCCEEEEEEec-CCCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 20 SRALFDYDPTKDDGLPSRGLPFHYGDILHVTNAS-DDEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 20 vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~-d~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
++|.-+|+..+++ .|-|++||.+.|++.. .+.||.+.... +++.|.||.+.+.
T Consensus 377 ~~a~~~~d~~ep~-----aLh~~kgD~IvVIegs~a~y~WfgQn~R----n~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 377 AVARETYDSIEPG-----ALHLTKGDEIVVIEGSGAGYDWFGQNKR----NQKVGTFPRSVVT 430 (1039)
T ss_pred ceeeeeccccCCC-----ceeeccCCeEEEEecCCccceeeccccc----cceecccCcceee
Confidence 3456667778888 9999999999999864 35799998764 7889999987765
No 52
>KOG4429|consensus
Probab=91.05 E-value=0.16 Score=45.90 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=44.9
Q ss_pred EEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhHH
Q psy10225 20 SRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRWE 82 (207)
Q Consensus 20 vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~E 82 (207)
..|+|.|.+..++ +|...+||+..+.+....+||.++.. +..|-+|..++.|
T Consensus 366 cdafYSfqarqdd-----el~~e~gditif~Ekkeeg~~f~rl~------gd~~hf~Aa~iEe 417 (421)
T KOG4429|consen 366 CDAFYSFQARQDD-----ELGGEIGDITIFDEKKEEGPTFCRLL------GDFEHFHAAEIEE 417 (421)
T ss_pred hhhhhcccccccc-----ccCCcccceeeecCcccCCCceeeec------cccCCCcHHHHHH
Confidence 5688999999999 99999999998888889999999984 6678888877654
No 53
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=90.93 E-value=0.36 Score=36.10 Aligned_cols=40 Identities=30% Similarity=0.356 Sum_probs=29.5
Q ss_pred CccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhHH
Q psy10225 38 GLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRWE 82 (207)
Q Consensus 38 eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~E 82 (207)
+|+.++|++|.|++..+.+-|.+|.. .|+-|+||..++.+
T Consensus 32 DLpi~~GE~LeVI~~t~~~kvlCRN~-----~GKYGYV~~~~L~~ 71 (89)
T PF14603_consen 32 DLPIKPGEILEVIQFTDDNKVLCRNS-----EGKYGYVLRSHLLP 71 (89)
T ss_dssp B----TT-B-EEEEESSSSEEEEEET-----TTEEEEEEGGGS--
T ss_pred cCCcCCCCEEEEEEeCCCCeEEEeCC-----CCceeEEEHHHccC
Confidence 89999999999999999999999994 79999999988753
No 54
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=87.55 E-value=0.84 Score=29.76 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=27.6
Q ss_pred cCCCCCEEEEEEecCCC-eeEEEEcCCCCCCceeeeecCChh
Q psy10225 40 PFHYGDILHVTNASDDE-WWQARRVLPSGDEQGIGIVPSKKR 80 (207)
Q Consensus 40 sF~kGDiL~Vl~~~d~~-WW~ar~~~~~~~~~~~G~IPS~~~ 80 (207)
.+..|+.+.|++....+ |.+.+.. ++..|+|++.|+
T Consensus 18 ~l~~g~~v~v~~~~~~~~W~~V~~~-----~g~~GwV~~~~l 54 (55)
T PF08239_consen 18 QLPKGEKVTVLGESGDGNWYKVRTY-----DGKTGWVSSSYL 54 (55)
T ss_dssp EEETTSEEEEEEEETT--EEEEEEE-----TTEEEEEEGGCE
T ss_pred EEeCCCEEEEEEEcCCcEEEEEECc-----CCcEEEEEcccc
Confidence 35789999999986555 9988554 577999998874
No 55
>PLN02772 guanylate kinase
Probab=86.86 E-value=0.067 Score=49.98 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=31.0
Q ss_pred cccceEEccCCccccc----ccccCCccCCcccccCCCcchhHHHH
Q psy10225 121 LIEKSVALGLTRGLKA----GQMTSNFKEHKYLDLDVPIGTIRRFQ 162 (207)
Q Consensus 121 ~~RPVvilgp~~dv~~----~~L~~e~P~~~f~~~~~p~~t~~~~~ 162 (207)
..+|+++.||. ++++ .+|.+++|. .| ..++++|||..-+
T Consensus 134 ~~k~iVlsGPS-GvGKsTL~~~L~~~~p~-~~-~~~vshTTR~pR~ 176 (398)
T PLN02772 134 AEKPIVISGPS-GVGKGTLISMLMKEFPS-MF-GFSVSHTTRAPRE 176 (398)
T ss_pred CCcEEEEECCC-CCCHHHHHHHHhhhccc-cc-cccccccCCCCcc
Confidence 66788888998 5555 468888998 89 9999999986554
No 56
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.27 E-value=1.3 Score=37.91 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=30.9
Q ss_pred cCCCCCEEEEEEecC-CCeeEEEEcCCCCCCceeeeecCChhHH
Q psy10225 40 PFHYGDILHVTNASD-DEWWQARRVLPSGDEQGIGIVPSKKRWE 82 (207)
Q Consensus 40 sF~kGDiL~Vl~~~d-~~WW~ar~~~~~~~~~~~G~IPS~~~~E 82 (207)
.+..|+.++|++..+ .+|.+.+.. +|..|||++.++.+
T Consensus 49 ~l~~G~~v~vl~~~~~~~w~~Vr~~-----~G~~GWV~~~~Ls~ 87 (206)
T PRK10884 49 TLNAGEEVTLLQVNANTNYAQIRDS-----KGRTAWIPLKQLST 87 (206)
T ss_pred EEcCCCEEEEEEEcCCCCEEEEEeC-----CCCEEeEEHHHhcC
Confidence 467899999998765 678888863 68899999999765
No 57
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=82.56 E-value=2.1 Score=28.40 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=27.8
Q ss_pred ccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCCh
Q psy10225 39 LPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKK 79 (207)
Q Consensus 39 LsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~ 79 (207)
-.+..|+.+.+++....+|.+.+.. ++..|+||...
T Consensus 25 ~~l~~g~~v~i~~~~~~~W~~v~~~-----~g~~Gwi~~~~ 60 (63)
T smart00287 25 GTLKKGDKVKVLGVDGQDWAKITYG-----SGQRGYVPGYV 60 (63)
T ss_pred EEecCCCEEEEEEccCCceEEEEcC-----CCCEEEEEeee
Confidence 3467899999998765589988863 47899998754
No 58
>PRK14737 gmk guanylate kinase; Provisional
Probab=81.12 E-value=0.23 Score=41.27 Aligned_cols=64 Identities=9% Similarity=0.102 Sum_probs=43.2
Q ss_pred ccceEEccCCcccccc----cccCCccCCcccccCCCcchhH-----------------HHHhhccceEEEE-------E
Q psy10225 122 IEKSVALGLTRGLKAG----QMTSNFKEHKYLDLDVPIGTIR-----------------RFQYGLKKIIQMF-------L 173 (207)
Q Consensus 122 ~RPVvilgp~~dv~~~----~L~~e~P~~~f~~~~~p~~t~~-----------------~~~~~~~~~~~~~-------~ 173 (207)
.+++++.||. +++++ +|.+++|+ + ...+++|||. .|+..++..-|+. +
T Consensus 4 ~~~ivl~Gps-G~GK~tl~~~l~~~~~~--~-~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~ 79 (186)
T PRK14737 4 PKLFIISSVA-GGGKSTIIQALLEEHPD--F-LFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNY 79 (186)
T ss_pred CeEEEEECCC-CCCHHHHHHHHHhcCCc--c-ccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCee
Confidence 4567777776 66664 67888898 3 3457888764 4677776666666 4
Q ss_pred EEEEEEEE-EEeccccc
Q psy10225 174 YSVTVISI-AICLKNKH 189 (207)
Q Consensus 174 ~~~~v~~~-~~~~~~~h 189 (207)
|.|...+| ++-+++.+
T Consensus 80 YGt~~~~i~~~~~~g~~ 96 (186)
T PRK14737 80 YGTPKAFIEDAFKEGRS 96 (186)
T ss_pred ecCcHHHHHHHHHcCCe
Confidence 57777777 65555555
No 59
>KOG2996|consensus
Probab=75.22 E-value=1.3 Score=43.70 Aligned_cols=39 Identities=26% Similarity=0.573 Sum_probs=31.5
Q ss_pred CccCCCCCEEEEEEe-cCCCeeEEEEcCCCCCCceeeeecCChh
Q psy10225 38 GLPFHYGDILHVTNA-SDDEWWQARRVLPSGDEQGIGIVPSKKR 80 (207)
Q Consensus 38 eLsF~kGDiL~Vl~~-~d~~WW~ar~~~~~~~~~~~G~IPS~~~ 80 (207)
-|.++.||++..+.- ....||.++..+ ....|++||+.+
T Consensus 626 ~l~~~~gdvlel~~~d~~s~~w~gr~~~----sr~sg~fpss~v 665 (865)
T KOG2996|consen 626 RLVLQEGDVLELLKGDAESSWWEGRNHG----SRESGNFPSSTV 665 (865)
T ss_pred ceEecCCceeehhcCCCCCcccccCCcc----CCccCCCCcccc
Confidence 688999999987664 345799999986 578899998764
No 60
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=71.19 E-value=6 Score=26.43 Aligned_cols=25 Identities=32% Similarity=0.691 Sum_probs=21.6
Q ss_pred cCCCCCEEEEEEecCCCeeEEEEcC
Q psy10225 40 PFHYGDILHVTNASDDEWWQARRVL 64 (207)
Q Consensus 40 sF~kGDiL~Vl~~~d~~WW~ar~~~ 64 (207)
.|++||.+.+....+..||.|..+.
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~ 26 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTK 26 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEE
Confidence 5899999999887789999998864
No 61
>KOG0040|consensus
Probab=68.31 E-value=0.26 Score=52.70 Aligned_cols=52 Identities=25% Similarity=0.538 Sum_probs=44.5
Q ss_pred EEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 19 ~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
++.|+|||...++. +.+.++||+++.+...+-.||..+.. .+.|++|.-|+.
T Consensus 970 ~v~alyd~q~kSpr-----ev~mKkgDvltll~s~nkdwwkve~~------d~qg~vpa~yvk 1021 (2399)
T KOG0040|consen 970 CVLALYDYQEKSPR-----EVTMKKGDVLTLLNSINKDWWKVEVN------DRQGFVPAAYVK 1021 (2399)
T ss_pred HHHHHHHHHhcCHH-----HHHHhhhhHHHHHhhcccccccchhh------hhcCcchHHHHH
Confidence 45689999998888 99999999999999889999999984 567899987753
No 62
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=67.93 E-value=6.3 Score=28.62 Aligned_cols=27 Identities=26% Similarity=0.610 Sum_probs=20.7
Q ss_pred CccCCCCCEEEEEEe------cCCCeeEEEEcC
Q psy10225 38 GLPFHYGDILHVTNA------SDDEWWQARRVL 64 (207)
Q Consensus 38 eLsF~kGDiL~Vl~~------~d~~WW~ar~~~ 64 (207)
=|+.+.||.+-|-+. .+.+||+|+-+.
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~ 35 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQVIH 35 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEEEEE
Confidence 477899999877554 357899999874
No 63
>KOG3565|consensus
Probab=62.00 E-value=2.6 Score=41.81 Aligned_cols=56 Identities=23% Similarity=0.417 Sum_probs=44.0
Q ss_pred eeEEEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecC-CCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 17 FSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASD-DEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 17 s~~vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d-~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
.-.+.|+|.|+++.+. .++...|+++.+++.+. .+|=.++.. .++..|++|..|+.
T Consensus 578 ~~~~~a~~~~~~~s~~-----~~si~~~~il~~ie~~~g~gwt~~r~~----~~~~~g~~Ptsyl~ 634 (640)
T KOG3565|consen 578 IRTSKALYAFEGQSEG-----TISIDPGEILQVIEEDKGDGWTRGRLE----PNGEKGYVPTSYLD 634 (640)
T ss_pred ccceecccCcCCCCCC-----ccccCcchhHHHHhhcccCCCCCCCCC----CCCcCCCCCccccc
Confidence 3367789999999999 99999999999998754 456555521 26788999999863
No 64
>KOG3705|consensus
Probab=60.05 E-value=8.4 Score=36.61 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=40.7
Q ss_pred EEEeccCCCCCCCCCCCCCccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhH
Q psy10225 20 SRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRW 81 (207)
Q Consensus 20 vRAlfdY~~~~d~~~P~~eLsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~ 81 (207)
+++.++..|+... ++.++.||++-|-. +-|-+-..+.|-+..+.|++||--+.
T Consensus 512 ~ivi~aH~prt~~-----ei~l~vGD~vgvAG----NHWdGySKG~Nr~t~~~GlfPSyKvr 564 (580)
T KOG3705|consen 512 VIVIEAHIPRTNK-----EIDLKVGDKVGVAG----NHWDGYSKGTNRQTYKEGLFPSYKVR 564 (580)
T ss_pred eEEEEecCCCccc-----ccCcccCCeeeecc----cccccccccccccccccCCCccceee
Confidence 5677888888888 99999999997653 45677666666667889999995443
No 65
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=55.78 E-value=13 Score=35.77 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=31.7
Q ss_pred cCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChhHHh
Q psy10225 40 PFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKRWER 83 (207)
Q Consensus 40 sF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~~E~ 83 (207)
++.+|+.+.|+...+.+|++.+.. +|..|||-+.|+.++
T Consensus 104 sl~~G~~V~Vl~~~~ngW~kI~~~-----~GktGwV~~~YLs~~ 142 (481)
T PRK13914 104 SIKGGTKVTVETTESNGWHKITYN-----DGKTGFVNGKYLTDK 142 (481)
T ss_pred eecCCCEEEEeecccCCeEEEEcC-----CCCEEEEecccccCC
Confidence 478999999987667789999973 488999988887653
No 66
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=53.39 E-value=20 Score=30.73 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=32.3
Q ss_pred cCCCCCEEEEEEecCC-CeeEEEEcCCCCCCceeeeecCChhHHhH
Q psy10225 40 PFHYGDILHVTNASDD-EWWQARRVLPSGDEQGIGIVPSKKRWERK 84 (207)
Q Consensus 40 sF~kGDiL~Vl~~~d~-~WW~ar~~~~~~~~~~~G~IPS~~~~E~~ 84 (207)
+.++|+.+.|+.+... +|-+.+.. .+..|+||+....+..
T Consensus 49 ~i~~Ge~vtvl~~~~~~~~~qI~~~-----~g~t~wi~~~~lt~e~ 89 (205)
T COG3103 49 SIKAGEKVTVLGTDGNTGYYQIRDS-----SGRTGWILSKNLTSEP 89 (205)
T ss_pred EecCCcEEEEEEEcCcccEEEEEec-----CCceEEEechhhcccc
Confidence 4689999999987554 78888874 6899999999887643
No 67
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=52.72 E-value=29 Score=22.55 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=26.6
Q ss_pred ccCCCCCEEEEEEecCCCeeEEEEcCCCCCCceeeeecCChh
Q psy10225 39 LPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSKKR 80 (207)
Q Consensus 39 LsF~kGDiL~Vl~~~d~~WW~ar~~~~~~~~~~~G~IPS~~~ 80 (207)
....+|.++.|+. ...+|.+.+ . ++..|+|+...+
T Consensus 19 ~~l~~g~~v~v~~-~~~~W~~V~-~-----~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVIE-CRGGWCKVR-A-----DGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEEE-ccCCeEEEE-E-----CCeEEeEEeeec
Confidence 4467788888885 567899988 4 578999987653
No 68
>KOG0707|consensus
Probab=28.26 E-value=21 Score=31.17 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=29.1
Q ss_pred cccc-cceEEccCCcccccc----cccCCccCCcccccCCCcchhH
Q psy10225 119 FKLI-EKSVALGLTRGLKAG----QMTSNFKEHKYLDLDVPIGTIR 159 (207)
Q Consensus 119 ~~~~-RPVvilgp~~dv~~~----~L~~e~P~~~f~~~~~p~~t~~ 159 (207)
++.. +|+++-||+ |++.. +|.+|+|+ .| |=.|-+||+.
T Consensus 33 ~p~~~~~ivl~gps-g~gk~tll~~l~ee~~~-~~-~fsvS~ttr~ 75 (231)
T KOG0707|consen 33 PPGDFKPIVLSGPS-GVGKSTLLKRLREELGG-MF-GFSVSHTTRT 75 (231)
T ss_pred CCCCCceEEEeCCC-CcchhHHHHHHHHHcCC-cc-eEEecCCCCC
Confidence 4455 999999998 77775 67889999 88 7677776654
No 69
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=26.44 E-value=17 Score=28.31 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=24.7
Q ss_pred ceEEccCCcccccc----cccCCccCCcccccCCCcchhHHH
Q psy10225 124 KSVALGLTRGLKAG----QMTSNFKEHKYLDLDVPIGTIRRF 161 (207)
Q Consensus 124 PVvilgp~~dv~~~----~L~~e~P~~~f~~~~~p~~t~~~~ 161 (207)
+++|+||. +.++. .|..++|. .| ...+++||+...
T Consensus 1 ~i~i~Gps-GsGKstl~~~L~~~~~~-~~-~~~v~~tTr~p~ 39 (137)
T cd00071 1 LIVLSGPS-GVGKSTLLKRLLEEFDP-NF-GFSVSHTTRKPR 39 (137)
T ss_pred CEEEECCC-CCCHHHHHHHHHhcCCc-cc-eecccccccCCC
Confidence 47888886 55554 67777787 77 778888777553
No 70
>PRK09371 gas vesicle synthesis protein GvpA; Provisional
Probab=23.38 E-value=1.5e+02 Score=21.14 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=21.6
Q ss_pred hhHHHHhhccceEEEEEE-EEEEEEEEE
Q psy10225 157 TIRRFQYGLKKIIQMFLY-SVTVISIAI 183 (207)
Q Consensus 157 t~~~~~~~~~~~~~~~~~-~~~v~~~~~ 183 (207)
---.+++.|+|++.++-+ .++|+.||+
T Consensus 9 LadvldriLDKGiVI~adi~VSl~gieL 36 (68)
T PRK09371 9 LAEVIDRILDKGIVVDAWVRVSLVGIEL 36 (68)
T ss_pred HHHHHHHHccCCeEEEEEEEEEEeeeEE
Confidence 345789999999999966 778888754
Done!