RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10225
(207 letters)
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 119 bits (300), Expect = 4e-33
Identities = 38/79 (48%), Positives = 52/79 (65%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
+ RALFDYD TKD G S+ L F +GD+LHV +A D+EWWQARRV + IG +PSK
Sbjct: 3 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSK 62
Query: 79 KRWERKQRARDRTVKFQGH 97
+R ER++ +R + +
Sbjct: 63 RRVERREWSRLKAKDWGSS 81
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 115 bits (290), Expect = 1e-31
Identities = 60/81 (74%), Positives = 70/81 (86%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
+ RALFDYDP +DDGLPSRGLPF +GDILHVTNASDDEWWQARRVL +++ IGIVPSK
Sbjct: 7 YVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSK 66
Query: 79 KRWERKQRARDRTVKFQGHVP 99
+RWERK RARDR+VK + +V
Sbjct: 67 RRWERKMRARDRSVKSEENVL 87
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 91.8 bits (227), Expect = 2e-22
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 5/111 (4%)
Query: 21 RALFDYDPTKDDGLPSR--GLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
R Y +D +P + F D LHV +++WW R V + IG +PS
Sbjct: 42 RTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLV---KEGCEIGFIPSP 98
Query: 79 KRWERKQRARDRTVKFQGHVPVLLEKVSITQFSMIELNTIFKLIEKSVALG 129
+ E + ++ K + + + V +G
Sbjct: 99 VKLENMRLQHEQRAKEFKLHSKEKRMPFFKKTEHTPPYDVVPSMRPVVLVG 149
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 84.6 bits (208), Expect = 2e-19
Identities = 38/79 (48%), Positives = 52/79 (65%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPSK 78
+ RALFDYD TKD G S+ L F +GD+LHV +A D+EWWQARRV + IG +PSK
Sbjct: 429 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSK 488
Query: 79 KRWERKQRARDRTVKFQGH 97
+R ER++ +R + +
Sbjct: 489 RRVERREWSRLKAKDWGSS 507
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 78.3 bits (192), Expect = 1e-17
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTN---------ASDDEWWQARRVLPSGDEQG 71
R F+ +P+ GL F GD+ HV + + W A R+ EQ
Sbjct: 8 RTHFELEPSPPSGLG-----FTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQE 62
Query: 72 IGIVPSKKRWERKQRARDRTVKFQGH 97
GI+P++ R E+
Sbjct: 63 RGIIPNQSRAEQLASLEAAQRAVGVG 88
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 71.4 bits (174), Expect = 7e-15
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 15 HLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNAS---DDEWWQARRVLPSGDEQG 71
+ R F+Y+ GL F+ G++ V + W A R+ + E
Sbjct: 104 GDSFYIRTHFEYEKESPYGLS-----FNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVE 158
Query: 72 IGIVPSKKRWERKQRARDRTVKFQGH 97
GI+P+K R E+ + K G
Sbjct: 159 RGIIPNKNRAEQLASVQYTLPKTAGG 184
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 71.1 bits (173), Expect = 1e-14
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 8/100 (8%)
Query: 1 MNQFYIVNVILISTHLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDE---W 57
+ ++ + R F+Y+ GL F+ G++ V + +
Sbjct: 82 KKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLS-----FNKGEVFRVVDTLYNGKLGS 136
Query: 58 WQARRVLPSGDEQGIGIVPSKKRWERKQRARDRTVKFQGH 97
W A R+ + E GI+P+K R E+ + K G
Sbjct: 137 WLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGG 176
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A
2kr3_A
Length = 65
Score = 57.7 bits (140), Expect = 7e-12
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR-RVLPSGDEQG-IGIVPS 77
AL+DY + GDIL + N+++ +WW+ ++ +G G VP+
Sbjct: 5 LALYDYQEKSPREVT-----MKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPA 58
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 57.2 bits (139), Expect = 9e-12
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY P + L GD + S+ WW+AR +G E G +PS
Sbjct: 12 VALYDYMPMNANDLQ-----LRKGDEYFILEESNLPWWRAR--DKNGQE---GYIPS 58
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 57.0 bits (138), Expect = 1e-11
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
L+D+ D+ L F GD+ HV + WW A + +G G VP
Sbjct: 14 VGLWDFKSRTDEELS-----FRAGDVFHVARKEEQWWW-ATLLDEAGGAVAQGYVPH 64
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 57.0 bits (138), Expect = 1e-11
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG---IGIVPS 77
ALFDY + L F GD L V + S + WW AR + G G G +PS
Sbjct: 11 VALFDYQARTAEDLS-----FRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPS 65
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 56.0 bits (136), Expect = 2e-11
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
RALFD++ ++ LP F GDIL + + +++WW A G G++P
Sbjct: 5 RALFDFNGNDEEDLP-----FKKGDILRIRDKPEEQWWNAE--DSEGKR---GMIPV 51
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 56.2 bits (136), Expect = 3e-11
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ +D L FH G+ + N+S+ +WW+AR + +G+ G +PS
Sbjct: 19 VALYDYEAITEDDLS-----FHKGEKFQILNSSEGDWWEARSLT-TGET---GYIPS 66
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3
domain, phosphorylation; NMR {Mus musculus} SCOP:
b.34.2.1
Length = 67
Score = 56.1 bits (136), Expect = 3e-11
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
A++D+ T+ L G + +D WW+AR G E G +PS
Sbjct: 6 VAMYDFQATEAHDLR-----LERGQEYIILEKNDLHWWRAR--DKYGSE---GYIPS 52
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 55.3 bits (134), Expect = 6e-11
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
RALFD++ ++ LP F GDIL + + +++WW A G G++P
Sbjct: 7 RALFDFNGNDEEDLP-----FKKGDILRIRDKPEEQWWNAE--DSEGKR---GMIPV 53
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 55.0 bits (133), Expect = 7e-11
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
A+ D+ + L F G+IL V D WW A+ G+E G+VP
Sbjct: 14 IAVGDFTAQQVGDLT-----FKKGEILLVIEKKPDGWWIAK--DAKGNE---GLVPR 60
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 55.2 bits (133), Expect = 2e-10
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ + L F G+ + N ++ +WW+AR + +G G +PS
Sbjct: 31 VALYDYEARTTEDLS-----FKKGERFQIINNTEGDWWEARS-IATGKS---GYIPS 78
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 54.3 bits (131), Expect = 2e-10
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ +D L FH G+ + N+S+ +WW+AR L +G+ G +PS
Sbjct: 9 EALYDYEARTEDDLS-----FHKGEKFQILNSSEGDWWEARS-LTTGET---GYIPS 56
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C
4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A
1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C
1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 54.3 bits (131), Expect = 2e-10
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ T+ L FH G+ + +WW+AR + +G+ G +PS
Sbjct: 10 VALYDYNATRWTDLS-----FHKGEKFQILEFGPGDWWEARSLT-TGET---GYIPS 57
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 53.9 bits (130), Expect = 3e-10
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 12/58 (20%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
AL+DY L + + ++S+ WW+ + D G G VPS
Sbjct: 23 IALYDYQTNDPQELA-----LRRNEEYCLLDSSEIHWWRVQ------DRNGHEGYVPS 69
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 52.7 bits (127), Expect = 5e-10
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
A F Y +D L F + VT+ D EW+ +GD GI P
Sbjct: 11 VAQFPYKSDYEDDLN-----FEKDQEIIVTSVEDAEWYFGEYQDSNGDVI-EGIFPK 61
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 52.8 bits (127), Expect = 6e-10
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
++ DY+ ++ F G + V + + WW + + G + G VPS
Sbjct: 14 VSIADYEGDEET------AGFQEGVSMEVLERNPNGWWYCQIL--DGVKPFKGWVPS 62
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 52.7 bits (127), Expect = 6e-10
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
+ ++D DD L F G+++ VT D EWW G + G+ P
Sbjct: 14 KTIYDCQADNDDELT-----FIEGEVIIVTGEEDQEWWIGHI---EGQPERKGVFPV 62
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 52.4 bits (126), Expect = 7e-10
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 12/58 (20%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
AL+DY L + ++ ++S+ WW+ + D+ G G PS
Sbjct: 24 IALYDYQTNDPQELA-----LRCDEEYYLLDSSEIHWWRVQ------DKNGHEGYAPS 70
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 51.5 bits (124), Expect = 1e-09
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDE-WWQARRVLPSGDEQGIGIVPS 77
A +++ T + LP F GD+L + + D W++A+ G E GI+P+
Sbjct: 15 IAKYNFHGTAEQDLP-----FCKGDVLTIVAVTKDPNWYKAK--NKVGRE---GIIPA 62
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 52.0 bits (125), Expect = 1e-09
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY + GDIL + N+++ +WW+ D Q G VP+
Sbjct: 6 LALYDYQEKSPREVT-----MKKGDILTLLNSTNKDWWKVE----VNDRQ--GFVPA 51
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 51.5 bits (124), Expect = 2e-09
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 11/57 (19%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
A+ DY T + L F G+ + + + +WW R +G G +P+
Sbjct: 11 VAIADYAATDETQLS-----FLRGEKILILRQTTADWWWGER---AGCC---GYIPA 56
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane;
2.05A {Saccharomyces cerevisiae}
Length = 70
Score = 51.2 bits (123), Expect = 2e-09
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
+AL+ YD DD + + F +IL V++ + WW+ARR +G+ GI+PS
Sbjct: 9 KALYPYDADDDD---AYEISFEQNEILQVSD-IEGRWWKARR--ANGET---GIIPS 56
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 51.2 bits (123), Expect = 2e-09
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
A +D+ + LP GDI+ ++ W A+ L G ++ G VP+
Sbjct: 6 EAAYDFPGSGSSS----ELPLKKGDIVFISRDEPSGWSLAK--LLDGSKE--GWVPT 54
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 51.2 bits (123), Expect = 2e-09
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY + D L H GDI+ V +++WW + G E G P+
Sbjct: 10 VALYDYTANRSDELT-----IHRGDIIRVFFKDNEDWWYGS--IGKGQE---GYFPA 56
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 52.2 bits (125), Expect = 2e-09
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
L+++ +DD L G+ L + D EW+ A+ + G G+VP
Sbjct: 7 VTLYEFKAERDDELD-----VSPGENLSICAHYDYEWFIAKPI---NRLGGPGLVPV 55
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 51.2 bits (123), Expect = 2e-09
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 10/58 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDE-WWQARRVLPSGDEQGIGIVPS 77
++ K L F GD++ + A +++ W++ + SG E G++ +
Sbjct: 21 ITKCEHTRPKPGELA-----FRKGDVVTILEACENKSWYRVKHHT-SGQE---GLLAA 69
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 50.7 bits (122), Expect = 2e-09
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
A +D+ + LP GD++++T W + + D G VP+
Sbjct: 4 EAAYDFPGSGSPS----ELPLKKGDVIYITREEPSGWSLGKLL----DGSKEGWVPT 52
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 50.7 bits (122), Expect = 3e-09
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL Y + + L G+ + V D W + +L +G GI PS
Sbjct: 11 VALHTYSAHRPEELD-----LQKGEGIRVLGKYQDGWLKGLSLL-TGR---TGIFPS 58
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 51.4 bits (123), Expect = 3e-09
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 21 RALFDYDPTKDDGLPSRG---LPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVP 76
ALFDYDP P LPF G I+ V D + + G+ +G++P
Sbjct: 21 VALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYR------GETCARLGLIP 74
Query: 77 S 77
Sbjct: 75 C 75
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 77
Score = 50.8 bits (122), Expect = 3e-09
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDE-WWQARRVLPSGDEQGIGIVPS 77
R ++D+ + L G+I+ VTN + W + + G++ G+VP+
Sbjct: 13 RVMYDFAAEPGNN----ELTVTEGEIITVTNPNVGGGWLEGK--NNKGEQ---GLVPT 61
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 50.5 bits (121), Expect = 6e-09
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ + L F GD + V S + WW+AR L + E G +PS
Sbjct: 29 VALYDYEAIHHEDLS-----FQKGDQMVVLEESGE-WWKARS-LATRKE---GYIPS 75
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 50.5 bits (121), Expect = 7e-09
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
A++DY +D L F G +++V N D +WWQ G+ G G+ PS
Sbjct: 38 IAMYDYAANNEDELS-----FSKGQLINVMNKDDPDWWQ-------GEINGVTGLFPS 83
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 50.6 bits (121), Expect = 9e-09
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
++ L+D+ K D L + G+ L + + EW+ A+ P G G G+VP
Sbjct: 7 YAIVLYDFKAEKADELT-----TYVGENLFICAHHNCEWFIAK---PIGRLGGPGLVPV 57
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 49.3 bits (118), Expect = 9e-09
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASD-----DEWWQARRVLPSGDEQGIG 73
F+RAL+D+ P + + GD++ + + D +WW+ R +G+ G
Sbjct: 9 FARALYDFVPENPEM----EVALKKGDLMAILSKKDPLGRDSDWWKVR--TKNGNI---G 59
Query: 74 IVPS 77
+P
Sbjct: 60 YIPY 63
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2
domain, signaling protein; NMR {Homo sapiens}
Length = 72
Score = 49.6 bits (119), Expect = 9e-09
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 11/57 (19%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
A FDY ++ L + L + + S WW+ R G VPS
Sbjct: 11 VAKFDYVAQQEQELD-----IKKNERLWLLDDSKS-WWRVRNS--MNKT---GFVPS 56
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 49.2 bits (118), Expect = 1e-08
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASD-DEWWQARRVLPSGDEQGIGIVPS 77
A++ ++ + + + G+ L + D W + RR G E G VP+
Sbjct: 11 VAIYHFEGSSEGTIS-----MAEGEDLSLMEEDKGDGWTRVRR--KEGGE---GYVPT 58
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 49.2 bits (118), Expect = 1e-08
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY + GDIL + N+++ +WW+ D Q G VP+
Sbjct: 9 LALYDYQEKSPREVT-----MKKGDILTLLNSTNKDWWKVE----VNDRQ--GFVPA 54
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 49.8 bits (119), Expect = 1e-08
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 14/60 (23%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTN--ASDDEWWQARRVLPSGDEQG-IGIVPS 77
+ L+ + ++ L F G+ + V +D EWW+ + + +G +G+VP
Sbjct: 21 QTLYPFSSVTEEELN-----FEKGETMEVIEKPENDPEWWKCK------NARGQVGLVPK 69
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 49.5 bits (118), Expect = 1e-08
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
RAL D+ D L GD++ V D W+ IG P
Sbjct: 22 RALKDFWNLHDPT----ALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPP 74
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 48.7 bits (117), Expect = 1e-08
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR 61
RAL+ ++P D L F GDI+++T+ SD WW+
Sbjct: 7 RALYTFEPRTPDELY-----FEEGDIIYITDMSDTNWWKGT 42
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 49.3 bits (118), Expect = 1e-08
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY + GDIL + N+++ +WW+ D Q G VP+
Sbjct: 21 LALYDYQEKSPREVT-----MKKGDILTLLNSTNKDWWKVE----VNDRQ--GFVPA 66
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 49.3 bits (118), Expect = 1e-08
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASD-DEWWQARRVLPSGDEQGIGIVPS 77
+ ++ Y ++ D L ++L V D ++W +AR G G VP
Sbjct: 17 KVVYSYKASQPDELT-----IEEHEVLEVIEDGDMEDWVKARN--KVGQV---GYVPE 64
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein
3, protein-protein interaction, structural genomics;
NMR {Homo sapiens}
Length = 68
Score = 48.8 bits (117), Expect = 1e-08
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 11/57 (19%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
+ L++++ L G+ L V + S WW + +G G +PS
Sbjct: 11 QVLYEFEARNPRELT-----VVQGEKLEVLDHSKR-WWLVKNE--AGRS---GYIPS 56
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 48.7 bits (117), Expect = 1e-08
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
RAL+ ++P D L F GDI+++T+ SD WW+ G +G G++PS
Sbjct: 11 RALYTFEPRTPDELY-----FEEGDIIYITDMSDTNWWK-------GTSKGRTGLIPS 56
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 48.8 bits (117), Expect = 2e-08
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 11/57 (19%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
A +DY +D L + L + + S WW+ R + G VPS
Sbjct: 8 IAKWDYTAQQDQELD-----IKKNERLWLLDDSKT-WWRVRNA--ANRT---GYVPS 53
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 48.4 bits (116), Expect = 2e-08
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
A +DYD +D+ L F D + DD+WW + G + G+ PS
Sbjct: 4 TAEYDYDAAEDNELT-----FVENDKIINIEFVDDDWWLG-ELEKDGSK---GLFPS 51
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 49.0 bits (117), Expect = 2e-08
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 11/57 (19%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
Y +D + F G + V + WW R G+ + G PS
Sbjct: 12 MTCSAYQKVQDSEIS-----FPAGVEVQVLEKQESGWWYVR----FGELE--GWAPS 57
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42
guanine nucleotide exchange factor (GEF) 9, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 48.9 bits (117), Expect = 2e-08
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
A++D+ + L F GD++ V +AS+ +WW G G P+
Sbjct: 14 EAVWDHVTMANRELA-----FKAGDVIKVLDASNKDWWW-------GQIDDEEGWFPA 59
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 47.9 bits (115), Expect = 2e-08
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+D++P D+ L GDI+ ++ W A SG + G+VP
Sbjct: 5 VALYDFEPENDNELR-----LAEGDIVFISYKHGQGWLVAE--NESGSKT--GLVPE 52
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 48.5 bits (116), Expect = 2e-08
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+D++P D+ L GDI+ ++ W A SG + G+VP
Sbjct: 9 VALYDFEPENDNELR-----LAEGDIVFISYKHGQGWLVAE--NESGSKT--GLVPE 56
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 48.6 bits (116), Expect = 2e-08
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 10/57 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
L DY F G+ L V + + WW+A L +G E +P
Sbjct: 21 AVLSDYPSPDISPPI-----FRRGEKLRVIS-DEGGWWKAIS-LSTGRE---SYIPG 67
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel
beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP:
b.34.2.1 PDB: 1n5z_A
Length = 92
Score = 49.1 bits (117), Expect = 2e-08
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASD-----DEWWQARRVLPSGDEQGIG 73
F+RAL+D+ P + + GD++ + + D +WW+ R +G+ G
Sbjct: 16 FARALYDFVPENPEM----EVALKKGDLMAILSKKDPLGRDSDWWKVR--TKNGNI---G 66
Query: 74 IVPS 77
+P
Sbjct: 67 YIPY 70
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 48.5 bits (116), Expect = 2e-08
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
+AL D++ DD L F DI+ + + D+ W G+ G G P+
Sbjct: 11 KALLDFERHDDDELG-----FRKNDIITIISQKDEHCWV-------GELNGLRGWFPA 56
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 48.0 bits (115), Expect = 3e-08
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+ YD D L F G+ + V EWW+A+ L + E G +PS
Sbjct: 11 VALYPYDGIHPDDLS-----FKKGEKMKVLE-EHGEWWKAKS-LLTKKE---GFIPS 57
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 48.6 bits (116), Expect = 3e-08
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
+ Y + + L G ++ + + WWQ Q G P+
Sbjct: 11 QVTSAYVASGSEQLS-----LAPGQLILILKKNTSGWWQGELQARGKKRQ-KGWFPA 61
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 48.6 bits (116), Expect = 3e-08
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
RAL+D++ +D+ L F +G+I+ V + SD WW+ G+ IG+ PS
Sbjct: 21 RALYDFEAVEDNELT-----FKHGEIIIVLDDSDANWWK-------GENHRGIGLFPS 66
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 48.0 bits (115), Expect = 3e-08
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGI 72
A F+++ + F G+ + + D+ W++ R +P QGI
Sbjct: 10 IAKFNFNGDTQVEMS-----FRKGERITLLRQVDENWYEGR--IPGTSRQGI 54
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 48.1 bits (115), Expect = 3e-08
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 12/59 (20%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTN--ASDDEWWQARRVLPSGDEQGIGIVPS 77
+ L+ + ++ L F G+ + V +D EWW+ + G G+VP
Sbjct: 10 QTLYPFSSVTEEELN-----FEKGETMEVIEKPENDPEWWKCKNA--RGQV---GLVPK 58
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels,
signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP:
b.34.2.1 PDB: 1h92_A 1kik_A
Length = 62
Score = 47.7 bits (114), Expect = 3e-08
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL Y+P+ D L F G+ L + S + WW+A+ L +G E G +P
Sbjct: 10 IALHSYEPSHDGDLG-----FEKGEQLRILEQSGE-WWKAQS-LTTGQE---GFIPF 56
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein;
1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A
1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A
1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A
...
Length = 62
Score = 47.6 bits (114), Expect = 3e-08
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
L+DY L GDIL + N+++ +WW+ G G VP+
Sbjct: 10 LVLYDYQEKSPRELT-----VKKGDILTLLNSTNKDWWKIEV-------NGRQGFVPA 55
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 48.5 bits (116), Expect = 3e-08
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY D L F GD + V EWW+AR L + E G +PS
Sbjct: 7 VALYDYVSWSPDDLS-----FQKGDQMVVLE-ESGEWWKARS-LATRKE---GYIPS 53
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein,
membrane, nuclear protein, phosphorylation,
polymorphism, transport, structural genomics; NMR {Homo
sapiens}
Length = 70
Score = 48.0 bits (115), Expect = 3e-08
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGI 72
A F+++ + F G+ + + D+ W++ R +P QGI
Sbjct: 11 IAKFNFNGDTQVEMS-----FRKGERITLLRQVDENWYEGR--IPGTSRQGI 55
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 47.6 bits (114), Expect = 3e-08
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQ 59
+ALFD+DP +D L F GD +HV + SD WW+
Sbjct: 6 QALFDFDPQEDGELG-----FRRGDFIHVMDNSDPNWWK 39
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 47.6 bits (114), Expect = 4e-08
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
RA++ Y P +D L GD + V DD W+ + G P
Sbjct: 11 RAMYQYRPQNEDELE-----LREGDRVDVMQQCDDGWFVG-VSRRTQK---FGTFPG 58
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 47.4 bits (113), Expect = 4e-08
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR 61
AL+DY + GDIL + N+++ +WW+
Sbjct: 25 LALYDYQEKSPREVT-----MKKGDILTLLNSTNKDWWKVE 60
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 47.6 bits (114), Expect = 4e-08
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
R LF + P + L G+I+ V +D W G G+VP
Sbjct: 11 RVLFGFVPETKEELQ-----VMPGNIVFVLKKGNDNWAT-------VMFNGQKGLVPC 56
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 47.8 bits (114), Expect = 4e-08
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASD-----DEWWQARRVLPSGDEQGIG 73
F+RAL+D+ P + + GD++ + + D +WW+ R +G+ G
Sbjct: 16 FARALYDFVPENPEM----EVALKKGDLMAILSKKDPLGRDSDWWKVR--TKNGNI---G 66
Query: 74 IVPS 77
+P
Sbjct: 67 YIPY 70
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics,
SH3 domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 47.7 bits (114), Expect = 4e-08
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
+A F++ T +D L GDI++VT + WW+ G G G PS
Sbjct: 14 KARFNFKQTNEDELS-----VCKGDIIYVTRVEEGGWWE-------GTLNGRTGWFPS 59
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 47.7 bits (114), Expect = 4e-08
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
A F Y L F GD+L + + +WW+ G+ G G++P
Sbjct: 14 VACFAYTGRTAQELS-----FRRGDVLRLHERASSDWWR-------GEHNGMRGLIPH 59
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 47.2 bits (113), Expect = 5e-08
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNAS-DDEWWQARRVLPSGDEQGIGIVPS 77
+D+ D L GD +++ + +WW +++ SG G+VP+
Sbjct: 6 IVQYDFMAESQDELT-----IKSGDKVYILDDKKSKDWWMC-QLVDSGKS---GLVPA 54
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif)
2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 47.2 bits (113), Expect = 5e-08
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR 61
RAL+D++ +D+ L F +G+++ V + SD WWQ
Sbjct: 9 RALYDFEAVEDNELT-----FKHGELITVLDDSDANWWQGE 44
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil,
cytoplasm, SH3 domain, signaling protein; NMR {Homo
sapiens} PDB: 2rol_A
Length = 68
Score = 47.3 bits (113), Expect = 5e-08
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 11/57 (19%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
+D+ L D+L V + S WW+ R P+G E G VP
Sbjct: 12 LCNYDFQARNSSELS-----VKQRDVLEVLDDSRK-WWKVR--DPAGQE---GYVPY 57
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic
protein NCK2; T-cell receptor, SH3 domain, immunology,
SH2 domain; NMR {Homo sapiens}
Length = 86
Score = 47.9 bits (114), Expect = 5e-08
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 11/57 (19%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
A +DY +D L + L + + S WW+ R + G VPS
Sbjct: 35 IAKWDYTAQQDQELD-----IKKNERLWLLDDSKT-WWRVRN--AANRT---GYVPS 80
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton,
phosphorylation, SH3 domain, DNA damage, DNA repair,
nucleus; NMR {Saccharomyces cerevisiae}
Length = 71
Score = 47.3 bits (113), Expect = 6e-08
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDD-EWWQARRVLPSGDEQGIGIVPS 77
+D+ D L GD +++ + +WW +++ SG G+VP+
Sbjct: 10 IVQYDFMAESQDELT-----IKSGDKVYILDDKKSKDWWMC-QLVDSGKS---GLVPA 58
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 47.3 bits (113), Expect = 6e-08
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
A++DY K+D L F G I++V +DD W++ G G G+ P
Sbjct: 21 VAIYDYTKDKEDELS-----FQEGAIIYVIKKNDDGWYE-------GVMNGVTGLFPG 66
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 46.8 bits (112), Expect = 6e-08
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR 61
RAL+D++ ++D L F G+++ V ++S+ WW R
Sbjct: 5 RALYDFEALEEDELG-----FRSGEVVEVLDSSNPSWWTGR 40
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 47.3 bits (113), Expect = 6e-08
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
+AL+ + +DD L GDI+ + ++ WW G G G P+
Sbjct: 11 KALYSFQARQDDELN-----LEKGDIVIIHEKKEEGWWF-------GSLNGKKGHFPA 56
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 47.4 bits (113), Expect = 6e-08
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 12/57 (21%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
L Y + + GDIL + N+++ +WW+ G VP+
Sbjct: 4 PPLPPYSAGGRE------VTMKKGDILTLLNSTNKDWWKVEV------NDRQGFVPA 48
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein;
2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB:
2sem_A 3sem_A 1k76_A 1kfz_A
Length = 58
Score = 46.8 bits (112), Expect = 6e-08
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQ 59
+ALFD++P + L F GD++ + N D WW+
Sbjct: 6 QALFDFNPQESGELA-----FKRGDVITLINKDDPNWWE 39
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 47.2 bits (113), Expect = 6e-08
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
RA FD+ LP GDI+++ D W++ G+ G +GI P
Sbjct: 11 RAKFDFKAQTLKELP-----LQKGDIVYIYKQIDQNWYE-------GEHHGRVGIFPR 56
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C*
2o88_A 1bbz_A 1awo_A
Length = 63
Score = 46.8 bits (112), Expect = 7e-08
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDD-EWWQARRVLPSGDEQGIGIVPS 77
AL+D+ + D+ L G+ L V + + EW +A+ + G G VPS
Sbjct: 9 VALYDFVASGDNTLS-----ITKGEKLRVLGYNHNGEWCEAQT------KNGQGWVPS 55
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 46.9 bits (112), Expect = 7e-08
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 11/57 (19%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
+ +Y ++ L G+++ V ++ WW +EQ G VP+
Sbjct: 12 VVVSNYKKQENSELS-----LQAGEVVDVIEKNESGWWFVST----SEEQ--GWVPA 57
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3,
SH3-containing adapter molecule 1, SCAM-1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 90
Score = 47.4 bits (113), Expect = 7e-08
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
A + + + L F G+ + + ++ W++ R+ +G + GI P+
Sbjct: 21 VAQYTFKGDLEVELS-----FRKGEHICLIRKVNENWYEG-RITGTGRQ---GIFPA 68
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like
protein; SH3, EPS8, EPS8L2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 46.9 bits (112), Expect = 7e-08
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 11/57 (19%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
+ L+D+ + L ++L V WW+ R SG G VP
Sbjct: 11 KILYDFTARNANELS-----VLKDEVLEVLEDGRQ-WWKLRSR--SGQA---GYVPC 56
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 46.8 bits (112), Expect = 7e-08
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQ 59
AL+ +DP +D L GD + + EW++
Sbjct: 6 EALYQFDPQQDGDLG-----LKPGDKVQLLEKLSPEWYK 39
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 46.4 bits (111), Expect = 7e-08
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
+ L+ Y DD + GD + + W +G+ G+VP+
Sbjct: 5 KVLYAYVQKDDDEIT-----ITPGDKISLVARDTGSGWTKINNDTTGET---GLVPT 53
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 46.9 bits (112), Expect = 8e-08
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
RAL+DY D L GDIL V +D WW + G G VP
Sbjct: 12 RALYDYTAQNPDELD-----LSAGDILEVILEGEDGWWT-------VERNGQRGFVPG 57
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 46.5 bits (111), Expect = 8e-08
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
+ LF+Y P +D L GDI+ + ++ WW G +G+ PS
Sbjct: 11 KVLFEYIPQNEDELE-----LKVGDIIDINEEVEEGWWS-------GTLNNKLGLFPS 56
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 46.4 bits (111), Expect = 8e-08
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
+AL+ YD D L F+ DI+ + WW G +G G+ P+
Sbjct: 9 KALYAYDAQDTDELS-----FNANDIIDIIKEDPSGWWT-------GRLRGKQGLFPN 54
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 46.9 bits (112), Expect = 9e-08
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 12/57 (21%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+ Y + L F G+ + VT D EWW GD GI PS
Sbjct: 12 IALYPYSSVEPGDLT-----FTEGEEILVTQ-KDGEWWTGS----IGDRS--GIFPS 56
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural
genomics, northeast structural genomics consortiu
PSI-2, protein structure initiative; NMR {Homo sapiens}
Length = 72
Score = 46.5 bits (111), Expect = 1e-07
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
RA++D++ +D+ L F G+I+ V + SD WW+ G+ IG+ PS
Sbjct: 21 RAIYDFEAAEDNELT-----FKAGEIITVLDDSDPNWWK-------GETHQGIGLFPS 66
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 47.0 bits (112), Expect = 1e-07
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
AL+DY DD + F DI+ DD WW+ G +G G+ P+
Sbjct: 21 VALYDYQAAGDDEIS-----FDPDDIITNIEMIDDGWWR-------GVCKGRYGLFPA 66
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 46.5 bits (111), Expect = 1e-07
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
AL+ + P +++ L GDI+ + S+++WW+ G Q IG P+
Sbjct: 11 VALYKFVPQENEDLE-----MRPGDIITLLEDSNEDWWK-------GKIQDRIGFFPA 56
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins,
CIN85, PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 46.5 bits (111), Expect = 1e-07
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
RA F++ T +D L F GD++HVT + WW+ G G G PS
Sbjct: 10 RAKFNFQQTNEDELS-----FSKGDVIHVTRVEEGGWWE-------GTHNGRTGWFPS 55
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 68
Score = 46.1 bits (110), Expect = 1e-07
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
+ F Y P DD L GDI+ V ++ WW+ G G G+ PS
Sbjct: 11 QVAFSYLPQNDDELE-----LKVGDIIEVVGEVEEGWWE-------GVLNGKTGMFPS 56
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 71
Score = 46.1 bits (110), Expect = 1e-07
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 11/57 (19%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
+ Y D + F G + V + + WW R G E G P+
Sbjct: 12 VTVQPYTSQSKDEIG-----FEKGVTVEVIRKNLEGWWYIRY---LGKE---GWAPA 57
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 45.7 bits (109), Expect = 1e-07
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 11/59 (18%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
++++ +D+ L D+L + + WW+ R SGD G VP+
Sbjct: 3 YAKSKYDFVARNSSELS-----VMKDDVLEILDDRRQ-WWKVRN--ASGDS---GFVPN 50
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 46.2 bits (110), Expect = 2e-07
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 15/61 (24%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASD----DEWWQARRVLPSGDEQGIGIVP 76
A++ + + L L + D EWW A +G + G VP
Sbjct: 17 FAVYTFKARNPNELS-----VSANQKLKILEFKDVTGNTEWWLAEV---NGKK---GYVP 65
Query: 77 S 77
S
Sbjct: 66 S 66
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 46.2 bits (110), Expect = 2e-07
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
A FDY L F G L + + D+WW+ G G G++P
Sbjct: 13 IAKFDYVGRTARELS-----FKKGASLLLYQRASDDWWE-------GRHNGIDGLIPH 58
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 46.1 bits (110), Expect = 2e-07
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQ 59
+AL+D++P D L F GD++ +TN D+ W++
Sbjct: 17 KALYDFEPENDGELG-----FREGDLITLTNQIDENWYE 50
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 45.7 bits (109), Expect = 2e-07
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
ALF Y+ T+ + L F GDI+ V + ++EW + G+ +G +GI P
Sbjct: 9 EALFSYEATQPEDLE-----FQEGDIILVLSKVNEEWLE-------GESKGKVGIFPK 54
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 45.6 bits (109), Expect = 2e-07
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
+AL+DYD D L F GD + V WW+ G+ G G VP+
Sbjct: 7 KALYDYDAQTGDELT-----FKEGDTIIVHQKDPAGWWE-------GELNGKRGWVPA 52
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 45.9 bits (109), Expect = 2e-07
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 11/61 (18%)
Query: 21 RALFDYDPTKDDGLPSRG--LPFHYGDILHVTNASDDE-WWQARRVLPSGDEQG-IGIVP 76
A DYDP L GD++ V DD+ ++ G+ G G+VP
Sbjct: 11 IAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYY-------GELGGHRGLVP 63
Query: 77 S 77
+
Sbjct: 64 A 64
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 45.7 bits (109), Expect = 2e-07
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR 61
A FDY L F G L + + + ++WW+ R
Sbjct: 10 IAKFDYVGRSARELS-----FKKGASLLLYHRASEDWWEGR 45
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain
protein 2A, endophilin 1, EEN-B1, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 45.7 bits (109), Expect = 2e-07
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
RAL+D++P + L F GDI+ +TN D+ W++ G G G P
Sbjct: 11 RALYDFEPENEGELG-----FKEGDIITLTNQIDENWYE-------GMLHGHSGFFPI 56
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 45.3 bits (108), Expect = 2e-07
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
RA F++ T +D L F GD++HVT + WW+ G G G PS
Sbjct: 8 RAKFNFQQTNEDELS-----FSKGDVIHVTRVEEGGWWE-------GTHNGRTGWFPS 53
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 45.7 bits (109), Expect = 2e-07
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
R FD+ L GDI+++ D W + G+ G +GI P+
Sbjct: 5 RLKFDFQAQSPKELT-----LQKGDIVYIHKEVDKNWLE-------GEHHGRLGIFPA 50
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 45.7 bits (109), Expect = 2e-07
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
AL+DY DD + F DI+ DD WW+ G +G G+ P+
Sbjct: 13 IALYDYQAAGDDEIS-----FDPDDIITNIEMIDDGWWR-------GVCKGRYGLFPA 58
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 45.7 bits (109), Expect = 2e-07
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
+AL +Y L F+ GD++ + D+ W+Q G+ G GI P+
Sbjct: 11 KALCNYRGKNPGDLK-----FNKGDVILLRRQLDENWYQ-------GEINGVSGIFPA 56
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 46.3 bits (110), Expect = 2e-07
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 14/61 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDE----WWQARRVLPSGDEQGIGIVP 76
RA +D+ D+ + F GD+L++ W A D Q G++P
Sbjct: 21 RAEYDFVAVSDEEIS-----FRAGDMLNLALKEQQPKVRGWLLASL-----DGQTTGLIP 70
Query: 77 S 77
+
Sbjct: 71 A 71
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 45.3 bits (108), Expect = 3e-07
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGI 72
+AL+DY + D L F G ++H + WW+ Q
Sbjct: 11 KALYDYKAKRSDELT-----FCRGALIHNVSKEPGGWWKGDY---GTRIQQY 54
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 45.9 bits (109), Expect = 3e-07
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
+ F Y P DD L GDI+ V ++ WW+ G G G+ PS
Sbjct: 22 QVAFSYLPQNDDELE-----LKVGDIIEVVGEVEEGWWE-------GVLNGKTGMFPS 67
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 45.4 bits (108), Expect = 3e-07
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQ 59
+ALFDY ++D L F I+ + WW+
Sbjct: 10 KALFDYKAQREDELT-----FIKSAIIQNVEKQEGGWWR 43
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 46.0 bits (109), Expect = 3e-07
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 21 RALFDYDPTKDDGLPSRG-LPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
A + Y+P LP G L+V D++ + +L G G+VPS
Sbjct: 21 VARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL-DGQR---GLVPS 74
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 45.5 bits (108), Expect = 4e-07
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
F+Y ++D L G + V D WW+ G G +G PS
Sbjct: 21 YVKFNYMAEREDELS-----LIKGTKVIVMEKCSDGWWR-------GSYNGQVGWFPS 66
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 44.9 bits (107), Expect = 4e-07
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
+ LF+Y P +D L GDI+ + ++ WW G +G+ PS
Sbjct: 5 KVLFEYIPQNEDELE-----LKVGDIIDINEEVEEGWWS-------GTLNNKLGLFPS 50
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma
1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus}
PDB: 1ywp_A 1ywo_A
Length = 61
Score = 44.5 bits (106), Expect = 4e-07
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQ 59
+ALFDY ++D L F I+ D WW+
Sbjct: 7 KALFDYKAQREDELT-----FTKSAIIQNVEKQDGGWWR 40
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 45.0 bits (107), Expect = 4e-07
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWW 58
RAL DY+ + LP F DI+ +T + W
Sbjct: 14 RALKDYNVSDTSLLP-----FKRNDIITITFKDQENKW 46
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 44.9 bits (107), Expect = 4e-07
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQ 59
R L+D++P L F GDI+ +TN D+ W++
Sbjct: 7 RGLYDFEPENQGELG-----FKEGDIITLTNQIDENWYE 40
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 44.5 bits (106), Expect = 5e-07
Identities = 15/58 (25%), Positives = 19/58 (32%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
FDY DD L G+I+ D WW+ G G G+ P
Sbjct: 5 IVEFDYQAQHDDELT-----ISVGEIITNIRKEDGGWWE-------GQINGRRGLFPD 50
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding
protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A
1neb_A 3i35_A
Length = 64
Score = 44.5 bits (106), Expect = 6e-07
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
RA++DY +D + F GD + DD W V +G G++P+
Sbjct: 10 RAMYDYSAQDEDEVS-----FRDGDYIVNVQPIDDGWMYG-TVQRTGRT---GMLPA 57
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 46.7 bits (110), Expect = 6e-07
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
F + ++ LP F G+ L + + ++ +WW+AR G G+VP+
Sbjct: 122 VGTFKFTGERETDLP-----FEQGERLEILSKTNQDWWEARNA--LGTT---GLVPA 168
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold
protein 1, islet-brain-1, IB-1, mitogen-activated P
kinase 8-interacting protein 1; 3.00A {Rattus
norvegicus}
Length = 71
Score = 44.2 bits (105), Expect = 7e-07
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
RA+F + P +D L D L V ++D W++A + +G G+ P+
Sbjct: 10 RAIFRFVPRHEDELE-----LEVDDPLLVELQAEDYWYEAYN-MRTGA---RGVFPA 57
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 44.3 bits (105), Expect = 8e-07
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 21 RALFDYDPTKDDGLPSRG--LPFHYGDILHVTNASDDE-WWQARRVLPSGDEQG-IGIVP 76
AL+DYDP + L F GDI+ V D++ ++ G+ G G+VP
Sbjct: 11 VALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYY-------GELNGQKGLVP 63
Query: 77 S 77
S
Sbjct: 64 S 64
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 44.8 bits (106), Expect = 9e-07
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 15/60 (25%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTN--ASDDEWWQARRVLPSGDEQG-IGIVPS 77
RAL+ ++ D + F+ GDI+ V + W G QG G P
Sbjct: 9 RALYPFEARNHD-----EMSFNSGDIIQVDEKTVGEPGWLY-------GSFQGNFGWFPC 56
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 43.8 bits (104), Expect = 1e-06
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDE-WWQAR 61
A +D+ T DD L F GDIL V N D+ W++A
Sbjct: 13 IAKYDFKATADDELS-----FKRGDILKVLNEECDQNWYKAE 49
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3
domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo
sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A
1wlp_B
Length = 193
Score = 46.5 bits (110), Expect = 1e-06
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
RA+ DY+ T + GD++ V S+ WW + ++ G +P+
Sbjct: 15 RAIADYEKTSGSEMA-----LSTGDVVEVVEKSESGWWFCQ----MKAKR--GWIPA 60
Score = 42.7 bits (100), Expect = 2e-05
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 11/57 (19%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
A+ Y + D + G+ + V + D WW R G PS
Sbjct: 85 VAIKAYTAVEGDEVS-----LLEGEAVEVIHKLLDGWWVIR---KDDV---TGYFPS 130
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 44.2 bits (105), Expect = 1e-06
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQ 59
ALFD+ L F GD++ + + + +W +
Sbjct: 22 EALFDFTGNSKLELN-----FKAGDVIFLLSRINKDWLE 55
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 43.9 bits (104), Expect = 1e-06
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 14/58 (24%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
+AL + KD+ L F DI+ V + WW G+ G G P
Sbjct: 14 QALCSWTAKKDN-----HLNFSKHDIITVLE-QQENWWF-------GEVHGGRGWFPK 58
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 47.1 bits (111), Expect = 1e-06
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
F + ++ LP F G+ L + + ++ +WW+AR G G+VP+
Sbjct: 151 VGTFKFTGERETDLP-----FEQGERLEILSKTNQDWWEAR--NALGTT---GLVPA 197
Score = 41.4 bits (96), Expect = 1e-04
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 11/64 (17%)
Query: 15 HLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IG 73
L + ++ FD P D L G + VT + ++ + G IG
Sbjct: 245 RLPAKAKVTFDRVPNAYD---PTQLRVKKGQTVLVTQKMSNGMYK-------AELDGQIG 294
Query: 74 IVPS 77
VP
Sbjct: 295 SVPH 298
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 43.3 bits (103), Expect = 1e-06
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 13/58 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
ALFD+ L F GD++ + + + +W + G +G GI P
Sbjct: 8 EALFDFTGNSKLELN-----FKAGDVIFLLSRINKDWLE-------GTVRGATGIFPL 53
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 43.3 bits (103), Expect = 1e-06
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDE-WWQARRVLPSGDEQGIGIVPS 77
RAL+DYD + D L F GD L D++ W + R L SG G+ P+
Sbjct: 7 RALYDYDGQEQDELS-----FKAGDELTKLGEEDEQGWCRGR--LDSGQL---GLYPA 54
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 43.4 bits (103), Expect = 1e-06
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTN--ASDDEWWQARRVLPSGDEQG-IGIVPS 77
R LF Y T +D L F G+I+H+ + + WW+ G+ G G+ P
Sbjct: 10 RTLFPYTGTNED-----ELTFREGEIIHLISKETGEAGWWK-------GELNGKEGVFPD 57
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN
structural genomics consortium, SGC; 2.00A {Homo
sapiens}
Length = 89
Score = 44.1 bits (104), Expect = 2e-06
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 15/62 (24%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTN-----ASDDEWWQARRVLPSGDEQGIGIV 75
A+FDY+ D+ L GD + V + + D+ WW + LPSG G+
Sbjct: 33 TAVFDYEAAGDE-----ELTLRRGDRVQVLSQDCAVSGDEGWWTGQ--LPSGRV---GVF 82
Query: 76 PS 77
PS
Sbjct: 83 PS 84
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3,
signaling protein; NMR {Homo sapiens}
Length = 67
Score = 43.1 bits (102), Expect = 2e-06
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 11/60 (18%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
++R + P D L G+++ VT + W+ G+ G G P
Sbjct: 8 YARVIQKRVPNAYD---KTALALEVGELVKVTKINVSGQWE-------GECNGKRGHFPF 57
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 46.7 bits (111), Expect = 2e-06
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ + L F G+ L + N ++ +WW A L +G G +PS
Sbjct: 7 ALYDYESRTETDLS-----FKKGERLQIVNNTEGDWWLAHS-LSTGQT---GYIPS 53
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 43.1 bits (102), Expect = 2e-06
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 15 HLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTN---ASDDEWWQAR 61
HL ++AL+D D L F GDI+ V D WW
Sbjct: 1 HLNVLAKALYDNVAESPD-----ELSFRKGDIMTVLEQDTQGLDGWWLCS 45
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 43.1 bits (102), Expect = 2e-06
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
F++A+ P D L GDI+ VT + + W+ G+ G G+ P
Sbjct: 3 FAKAIQKRVPCAYD---KTALALEVGDIVKVTRMNINGQWE-------GEVNGRKGLFPF 52
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 42.6 bits (101), Expect = 3e-06
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
RA+F + P +D L D L V ++D W++A + +G G+ P+
Sbjct: 7 RAIFRFVPRHEDELE-----LEVDDPLLVELQAEDYWYEAYNMR-TGA---RGVFPA 54
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 42.7 bits (101), Expect = 3e-06
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
RA+ Y D + F GD+ V N +D W L + ++ G++
Sbjct: 11 RAILPYTKVPDTDE----ISFLKGDMFIVHNELEDGWMWV-TNLRTDEQ---GLIVE 59
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 42.6 bits (101), Expect = 3e-06
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 15/60 (25%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTN--ASDDEWWQARRVLPSGDEQG-IGIVPS 77
+ +F Y+ DD L GDI+ + N D WW+ G+ G G+ P
Sbjct: 11 KVIFPYEAQNDD-----ELTIKEGDIVTLINKDCIDVGWWE-------GELNGRRGVFPD 58
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 42.3 bits (100), Expect = 3e-06
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 16/61 (26%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTN---ASDDEWWQARRVLPSGDEQG-IGIVP 76
+AL+DY+ DD L F G I+ + N DD +W+ G+ G IG+ P
Sbjct: 12 KALYDYEGQTDD-----ELSFPEGAIIRILNKENQDDDGFWE-------GEFNGRIGVFP 59
Query: 77 S 77
S
Sbjct: 60 S 60
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 45.1 bits (106), Expect = 4e-06
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
A +D+ T DD L F GDIL V N D+ W + +G + G +P
Sbjct: 4 IAKYDFKATADDELS-----FKRGDILKVLNEECDQNWYKAEL--NGKD---GFIPK 50
Score = 38.5 bits (89), Expect = 6e-04
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
+ +ALFD+DP +D L F GD +HV + SD WW+ G G+ P
Sbjct: 160 YVQALFDFDPQEDGELG-----FRRGDFIHVMDNSDPNWWKGAC---HGQT---GMFPR 207
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 43.9 bits (103), Expect = 4e-06
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 14/59 (23%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDE-WWQARRVLPSGDEQG-IGIVPS 77
+A +D+ L GDI+ + N + WW+ G+ G IG PS
Sbjct: 9 KARYDFCARDRSELS-----LKEGDIIKILNKKGQQGWWR-------GEIYGRIGWFPS 55
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 42.3 bits (100), Expect = 4e-06
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 15/60 (25%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTN--ASDDEWWQARRVLPSGDEQG-IGIVPS 77
A +++ L GD++ + + D WW+ G+ G IG PS
Sbjct: 11 VARYNFAARDMR-----ELSLREGDVVRIYSRIGGDQGWWK-------GETNGRIGWFPS 58
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 41.9 bits (99), Expect = 5e-06
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 15/60 (25%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTN--ASDDEWWQARRVLPSGDEQG-IGIVPS 77
+ +F Y+ DD L GDI+ + N D WW+ G+ G G+ P
Sbjct: 13 KVIFPYEAQNDD-----ELTIKEGDIVTLINKDCIDVGWWE-------GELNGRRGVFPD 60
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain,
SH2 domain, SRC homology 3, RAS signaling pathway,
proto- oncogene, phosphorylation; 1.5A {Homo sapiens}
PDB: 2j06_A
Length = 65
Score = 42.0 bits (99), Expect = 5e-06
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
RA+ Y D + F GD+ V N +D W L + ++ G++
Sbjct: 9 RAILPYTKVPDTDE----ISFLKGDMFIVHNELEDGWMWV-TNLRTDEQ---GLIVE 57
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR
{Homo sapiens}
Length = 88
Score = 42.5 bits (100), Expect = 5e-06
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
F++A+ P D L GDI+ VT + + W+ G+ G G+ P
Sbjct: 18 FAKAIQKRVPCAYD---KTALALEVGDIVKVTRMNINGQWE-------GEVNGRKGLFPF 67
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 41.9 bits (99), Expect = 5e-06
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
+A+F + + L L F GD++ + + W + G P
Sbjct: 11 KAIFSHAAGDNSTL----LSFKEGDLITLLVPEARDGWHYGESEKTKMR---GWFPF 60
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 72
Score = 41.9 bits (99), Expect = 6e-06
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 14/59 (23%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDE-WWQARRVLPSGDEQG-IGIVPS 77
+AL+ D L F G + + S + W + G G G++P
Sbjct: 14 KALYACKAEHDS-----ELSFTAGTVFDNVHPSQEPGWLE-------GTLNGKTGLIPE 60
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 41.4 bits (98), Expect = 6e-06
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 12/58 (20%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
+DYD DD L G+I+ +E W G+ G G+ P
Sbjct: 5 IVEYDYDAVHDDELT-----IRVGEIIRNVKKLQEEGWL------EGELNGRRGMFPD 51
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 42.8 bits (100), Expect = 7e-06
Identities = 8/59 (13%), Positives = 22/59 (37%), Gaps = 9/59 (15%)
Query: 19 FSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
A++++ + L GD++ + + +W++ + + GI P
Sbjct: 61 HGVAIYNFQGSGAPQLS-----LQIGDVVRIQE-TCGDWYRGYLIKHKMLQ---GIFPK 110
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling
protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 41.5 bits (98), Expect = 8e-06
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTN--ASDDEWWQ 59
+ +F Y+ DD L GDI+ + N D WW+
Sbjct: 6 KVIFPYEAQNDD-----ELTIKEGDIVTLINKDCIDVGWWE 41
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 41.0 bits (97), Expect = 8e-06
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 12/58 (20%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
A++ Y+ DD + GDI+ V D W G+ G G+ P+
Sbjct: 4 EAIYAYEAQGDDEIS-----IDPGDIITVIRGDDGSGWT------YGECDGLKGLFPT 50
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 81
Score = 41.6 bits (98), Expect = 9e-06
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 13/59 (22%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTN--ASDDEWWQARRVLPSGDEQGIGIVPS 77
R L+DYD L +++ V + D +W R + G VP
Sbjct: 21 RVLYDYDAANST-----ELSLLADEVITVFSVVGMDSDWLMGER---GNQK---GKVPI 68
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 40.6 bits (95), Expect = 1e-05
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 5/41 (12%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR 61
F Y ++D L G + V D WW+
Sbjct: 5 FVXFAYVAEREDELS-----LVXGSRVTVMEXCSDGWWRGS 40
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 44.0 bits (104), Expect = 1e-05
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+D+ + D+ L G+ L V + + W + + G G VPS
Sbjct: 48 ALYDFVASGDNTLS-----ITKGEKLRVLGYNHNGEWCEAQ-----TKNGQGWVPS 93
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 40.7 bits (96), Expect = 1e-05
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 16/61 (26%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTN---ASDDEWWQARRVLPSGDEQG-IGIVP 76
RAL+D P D L F GDIL + + WW+ G G+ P
Sbjct: 11 RALYDNCPDCSD-----ELAFSRGDILTILEQHVPESEGWWK-------CLLHGRQGLAP 58
Query: 77 S 77
+
Sbjct: 59 A 59
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 85
Score = 40.5 bits (95), Expect = 2e-05
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 7/43 (16%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTN--ASDDEWWQAR 61
AL Y L FH GD++ + + W
Sbjct: 12 IALRSYITDNCS-----LLSFHRGDLIKLLPVATLEPGWQFGS 49
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 40.5 bits (95), Expect = 2e-05
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 11/58 (18%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
R D+ P+ D + L GDI+ + + W G +G
Sbjct: 13 RVHTDFTPSPYD---TDSLKLKKGDIIDIISKPPMGTWM-------GLLNNKVGTFKF 60
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor
complex, DOWN-regulated kinase, ordered activation
loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A*
2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 43.2 bits (102), Expect = 2e-05
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ + L F GD + V EWW+AR L + E G +PS
Sbjct: 13 ALYDYEAIHHEDLS-----FQKGDQMVVLE-ESGEWWKARS-LATRKE---GYIPS 58
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 39.8 bits (94), Expect = 2e-05
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASD--DEWWQAR 61
AL+ + + LPF GD++ + SD ++WW R
Sbjct: 7 VALYSFAGEESG-----DLPFRKGDVITILKKSDSQNDWWTGR 44
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 40.1 bits (94), Expect = 3e-05
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDD--EWWQARRVLPSGDEQG-IGIVPS 77
AL+ ++ + L F GD + V + +D +WW+ G +G GI P+
Sbjct: 21 TALYSFEGQQPG-----DLNFQAGDRITVISKTDSHFDWWE-------GKLRGQTGIFPA 68
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 41.9 bits (99), Expect = 6e-05
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNAS-DDEWWQARRVLPSGDEQGIGIVPS 77
A +++ T + LP F GD+L + + D W++A+ G E GI+P+
Sbjct: 16 AKYNFHGTAEQDLP-----FCKGDVLTIVAVTKDPNWYKAK--NKVGRE---GIIPA 62
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 38.5 bits (90), Expect = 9e-05
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDE-WWQARRVLPSGDEQGI 72
+ +F + + L L F GD+L + + + W + +G
Sbjct: 11 KTIFPHTAGNNKTL----LSFAQGDVLTLLIPEEKDGWLYGE--HDTTKARGW 57
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein
1; IRTKS-SH3, espfu, complex structure, protein
binding; NMR {Homo sapiens}
Length = 67
Score = 38.5 bits (90), Expect = 9e-05
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDE-WWQARRVLPSGDEQGI 72
+ +F + + L L F GD++ + + + W +G
Sbjct: 10 KTIFPHTAGSNKTL----LSFAQGDVITLLIPEEKDGWLYGE--HDVSKARGW 56
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 40.9 bits (96), Expect = 1e-04
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGD 68
++DY DD L F G I++V N D +WW+ G
Sbjct: 6 IGMYDYTAQNDDELA-----FSKGQIINVLNKEDPDWWKGEVSGQVGL 48
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 38.5 bits (90), Expect = 1e-04
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 10/57 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
+ + D + D++ V +D W R+ + G P
Sbjct: 21 EITKAFFAKQAD-----EVTLQQADVVLVLQ-QEDGWLYGERLR----DGETGWFPE 67
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 40.6 bits (95), Expect = 2e-04
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
AL+DY+ + L F G+ L + N ++ +WW A L +G G +PS
Sbjct: 90 ALYDYESRTETDLS-----FKKGERLQIVNNTEGDWWLAHS-LSTGQT---GYIPS 136
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 37.5 bits (87), Expect = 2e-04
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 39 LPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
+ GDIL + N+++ +WW+ D Q G VP+
Sbjct: 8 VTMKKGDILTLLNSTNKDWWKVE----VNDRQ--GFVPA 40
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 37.9 bits (88), Expect = 2e-04
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 13/61 (21%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVT----NASDDEWWQARRVLPSGDEQGIGIVP 76
+ ++ Y P DD L GD + ++ ++ + W L +G G++P
Sbjct: 20 QVIYPYTPQNDD-----ELELVPGDFIFMSPMEQTSTSEGWIYG-TSLTTGCS---GLLP 70
Query: 77 S 77
Sbjct: 71 E 71
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 40.1 bits (92), Expect = 2e-04
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 15 HLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDE-WWQARRVLPSGDEQGIG 73
RAL+DY+ + D L F GD L D++ W + R L +G G
Sbjct: 426 GTEVRVRALYDYEGQEHDELS-----FKAGDELTKMEDEDEQGWCKGR--LDNGQV---G 475
Query: 74 IVPS 77
+ P+
Sbjct: 476 LYPA 479
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 38.1 bits (88), Expect = 3e-04
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 14/66 (21%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNAS-----DDEWWQARRVLPSGDEQGI--- 72
+A DY T D L GD++ V D+ W + + +
Sbjct: 48 QAQHDYTATDTD-----ELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKC 102
Query: 73 -GIVPS 77
G+ P
Sbjct: 103 RGVFPE 108
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 37.3 bits (86), Expect = 3e-04
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG 71
RAL+ + + + L GD+L V+ A+ A G
Sbjct: 15 RALYPFRRERPE-----DLELLPGDVLVVSRAALQALGVAEGGERCPQSVG 60
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 36.6 bits (85), Expect = 4e-04
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 39 LPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVPS 77
+ GDIL + N+++ +WW+ + G VP+
Sbjct: 6 VTMKKGDILTLLNSTNKDWWK-------VEVNDRQGFVPA 38
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 38.8 bits (89), Expect = 6e-04
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGI 72
ALFD+ L F GD++ + + + +W + GI
Sbjct: 178 EALFDFTGNSKLELN-----FKAGDVIFLLSRINKDWLEGT----VRGATGI 220
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 37.4 bits (86), Expect = 0.001
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARR 62
AL Y+P+ D L F G+ L + EWW+A+
Sbjct: 16 IALHSYEPSHDGDLG-----FEKGEQLRILE-QSGEWWKAQS 51
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 37.9 bits (87), Expect = 0.001
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 39 LPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
LPF GDIL + + +++WW A + + G++P
Sbjct: 153 LPFKKGDILRIRDKPEEQWWNAE----DSEGK-RGMIPV 186
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 38.0 bits (88), Expect = 0.001
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 11 LISTHLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR 61
LIS + AL+D+ D L F GD++ V +A++ EWW R
Sbjct: 24 LISDGSVVCAEALWDHVTMDDQELG-----FKAGDVIEVMDATNREWWWGR 69
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 36.9 bits (84), Expect = 0.002
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 12/61 (19%)
Query: 18 SFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG-IGIVP 76
+ RALFD++ ++ LP F GDIL + + +++WW A D +G G++P
Sbjct: 135 EYVRALFDFNGNDEEDLP-----FKKGDILRIRDKPEEQWWNAE------DSEGKRGMIP 183
Query: 77 S 77
Sbjct: 184 V 184
Score = 36.9 bits (84), Expect = 0.003
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 11/66 (16%)
Query: 13 STHLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG- 71
+ ++R + P D L G+++ VT + W+ G+ G
Sbjct: 233 LQNGPIYARVIQKRVPNAYD---KTALALEVGELVKVTKINVSGQWE-------GECNGK 282
Query: 72 IGIVPS 77
G P
Sbjct: 283 RGHFPF 288
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 36.5 bits (83), Expect = 0.004
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 11 LISTHLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQAR 61
+ +F+ + L GDI+ VT + + W+
Sbjct: 233 TQNGPVFAKAIQKRVPCAYDKTALA-----LEVGDIVKVTRMNINGQWEGE 278
Score = 34.6 bits (78), Expect = 0.017
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
R L+D+ + LP F G+IL + +++WW AR G +G++P
Sbjct: 129 RTLYDFPGNDAEDLP-----FKKGEILVIIEKPEEQWWSAR--NKDGR---VGMIPV 175
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.012
Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 32/136 (23%)
Query: 32 DGLPSRGLPFHYGDILHVTNASDDEWWQARRV-------LPS------GDEQGIGIVPSK 78
D +R L +G + HV ++ A ++ LP D++ P+
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE-----PTT 56
Query: 79 KRWERKQRARDRTVKFQGHVPVLLEKVSITQFSMIELNTIFKLIEKSVALG-----LTRG 133
+ KF G+V L+E + QF + LN E G L
Sbjct: 57 P--------AELVGKFLGYVSSLVEPSKVGQFDQV-LNLCLTEFENCYLEGNDIHALAAK 107
Query: 134 LKAGQMTSNFKEHKYL 149
L T+ K + +
Sbjct: 108 LLQENDTTLVKTKELI 123
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 33.1 bits (75), Expect = 0.014
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 14 THLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTN---ASDDEWWQA--RRVLPSGD 68
+H S + AL DY D L H G +++V + +W +
Sbjct: 19 SHPISMAVALQDYMA-PDCRF----LTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDL 73
Query: 69 EQGIGIVPSK 78
+G PS
Sbjct: 74 AARLGYFPSS 83
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein
complex, DOCK2, ELMO1, SH3 domain, PH domain bundle,
proline-rich sequence, cytoskeleton; 2.10A {Homo
sapiens}
Length = 184
Score = 33.9 bits (77), Expect = 0.018
Identities = 8/60 (13%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
Query: 18 SFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQGIGIVPS 77
A++++ + L GD++ + + +W++ + + GI P
Sbjct: 18 RHGVAIYNFQGSGAP-----QLSLQIGDVVRIQE-TCGDWYRGYLI---KHKMLQGIFPK 68
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3
domain, peptide complex, alternative splicing, disease
mutation, HOST-virus interaction, phosphoprotein,
polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A
1pnj_A 2pni_A 1pks_A 1pkt_A
Length = 83
Score = 32.0 bits (72), Expect = 0.026
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 21 RALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLPSGDEQG 71
RAL+DY +++ + H GDIL V S + +E G
Sbjct: 9 RALYDYKKEREE-----DIDLHLGDILTVNKGSLVALGFSDGQEARPEEIG 54
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 31.9 bits (72), Expect = 0.029
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 39 LPFHYGDILHVTNASDDE-WWQARRVLPSGDEQGIGIVPS 77
L + GDI+ +T A + WW+ R + + +G P
Sbjct: 35 LRLNPGDIVELTKAEAEHNWWEG-RNTATNE---VGWFPC 70
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex,
GRB2,VAV, signaling protein/signaling protein complex;
1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 30.3 bits (68), Expect = 0.076
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 39 LPFHYGDILHVTNASDDE-WWQARRVLPSGDEQGIGIVPS 77
L + GDI+ +T A + WW+ R + + +G P
Sbjct: 27 LRLNPGDIVELTKAEAEHNWWEG-RNTATNE---VGWFPC 62
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.084
Identities = 19/166 (11%), Positives = 42/166 (25%), Gaps = 56/166 (33%)
Query: 59 QARRVLPSGDEQGIGIVPSKK-----RWER-KQRARDRTVKFQGHVPVLLEKVSITQFSM 112
+ P + + I+ W+ K D+ + S+
Sbjct: 321 EVLTTNP----RRLSIIAESIRDGLATWDNWKHVNCDKLTTII--------ESSLNVLEP 368
Query: 113 IELNTIFKLIEKSVALGLTRGLKAGQMTSNFKEHKYLDLDVPIGTIRRFQYGLKKIIQMF 172
E +F L + F +P + + + K M
Sbjct: 369 AEYRKMFD------RLSV------------FPP----SAHIPTILLSLIWFDVIKSDVMV 406
Query: 173 L----------------YSVTVISIAICLKNKHNELQEHHILVINK 202
+ ++++ SI + LK K H +++
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Score = 26.7 bits (58), Expect = 7.7
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 146 HKYLDLDVPIGTIRRFQYGLKKIIQMFL 173
H ++D + QY K I+ +F
Sbjct: 4 HHHMDFET-----GEHQYQYKDILSVFE 26
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 28.7 bits (63), Expect = 1.5
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 14 THLFSFSRALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWW 58
A++ + P D +P GDI+ V D +
Sbjct: 439 GQNAHNQIAIYAHQPRTADEIP-----MEPGDIIGVAGNHWDGYS 478
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A
{Leuconostoc mesenteroides} PDB: 3tto_A*
Length = 1108
Score = 27.3 bits (60), Expect = 4.9
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 43 YGDIL--HVTNASDDEWWQARRVLPSGDEQGIGI 74
D++ V N E A R G++ G
Sbjct: 930 MADVVDNQVYNLPGKEVVSATRAGVYGNDDATGF 963
>3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL;
1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A*
3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A
1l7q_A 1l7r_A
Length = 587
Score = 26.8 bits (59), Expect = 5.7
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 22 ALFDYDPTKDDGLPSRGLPFHYGDILHVTNASDDEWWQARRVLP 65
P + L R +P+ ++ + +DE WQ+ +
Sbjct: 201 GAASVTPLAEQPLLGRLIPWVIDQVVD--HPDNDESWQSISLFE 242
>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET:
SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A*
2osw_A* 2oyl_A* 2oym_A* 2osy_A*
Length = 481
Score = 26.9 bits (58), Expect = 6.2
Identities = 3/38 (7%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 39 LPFHYGDILHVTNASDDEWWQA-RRVLPSGDEQGIGIV 75
+ + D ++ + E+G ++
Sbjct: 85 FLISWRSVEPAPGVYDQQYLDRVEDRVGWYAERGYKVM 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.412
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,256,914
Number of extensions: 190641
Number of successful extensions: 698
Number of sequences better than 10.0: 1
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 206
Length of query: 207
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,216,824
Effective search space: 497585232
Effective search space used: 497585232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (24.9 bits)