BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10226
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 66/94 (70%)
Query: 6 VNGGDSEWEYEEIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQV 65
VNG + E EYEEI LER TDNPHIGDD SI+ITK+IPGGAAA DGRL+V
Sbjct: 51 VNGTEGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRV 110
Query: 66 NDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
ND I VN V V +V HSAAVEALK AG++V L
Sbjct: 111 NDSILFVNEVDVREVTHSAAVEALKEAGSIVRLY 144
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 40/62 (64%)
Query: 37 NPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVV 96
N HI D SIY+TK+I GGAA DGRLQ+ D I VN V + DV H AV ALK +VV
Sbjct: 177 NQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVV 236
Query: 97 TL 98
L
Sbjct: 237 YL 238
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 42 DDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGE 101
D I+I+ ++ GG A G L+ D I VN V + + H A ALK AG VT++ +
Sbjct: 329 DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQ 388
Query: 102 KNLENVTHEEA 112
E + EA
Sbjct: 389 YKPEEYSRFEA 399
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 62/86 (72%)
Query: 13 WEYEEIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQV 72
+EYEEI LER TDNPHIGDD+SI+ITK+I GGAAA DGRL+VND I +V
Sbjct: 10 YEYEEITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRV 69
Query: 73 NHVTVVDVPHSAAVEALKRAGNVVTL 98
N V V DV HS AVEALK AG++V L
Sbjct: 70 NEVDVRDVTHSKAVEALKEAGSIVRL 95
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 107 bits (266), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 63/90 (70%)
Query: 9 GDSEWEYEEIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDV 68
G E+E+EEI LER TDNPHIGDD I+ITK+IPGGAAA DGRL+VND
Sbjct: 4 GSPEFEFEEITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDC 63
Query: 69 IHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
I +VN V V +V HS AVEALK AG++V L
Sbjct: 64 ILRVNEVDVSEVSHSKAVEALKEAGSIVRL 93
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 61/86 (70%)
Query: 13 WEYEEIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQV 72
EYEEI LER TDNPHIGDD SI+ITK+IPGGAAA DGRL+VND I V
Sbjct: 4 MEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 63
Query: 73 NHVTVVDVPHSAAVEALKRAGNVVTL 98
N V V +V HSAAVEALK AG++V L
Sbjct: 64 NEVDVREVTHSAAVEALKEAGSIVRL 89
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 45/82 (54%)
Query: 17 EIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
EI+L + N HI D SIY+TK+I GGAA DGRLQ+ D I VN V
Sbjct: 103 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG 162
Query: 77 VVDVPHSAAVEALKRAGNVVTL 98
+ DV H AV ALK +VV L
Sbjct: 163 LEDVMHEDAVAALKNTYDVVYL 184
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 61/86 (70%)
Query: 13 WEYEEIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQV 72
EYEEI LER TDNPHIGDD SI+ITK+IPGGAAA DGRL+VND I V
Sbjct: 1 MEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 60
Query: 73 NHVTVVDVPHSAAVEALKRAGNVVTL 98
N V V +V HSAAVEALK AG++V L
Sbjct: 61 NEVDVREVTHSAAVEALKEAGSIVRL 86
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 61/86 (70%)
Query: 13 WEYEEIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQV 72
EYEEI LER TDNPHIGDD SI+ITK+IPGGAAA DGRL+VND I V
Sbjct: 1 MEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 60
Query: 73 NHVTVVDVPHSAAVEALKRAGNVVTL 98
N V V +V HSAAVEALK AG++V L
Sbjct: 61 NEVDVREVTHSAAVEALKEAGSIVRL 86
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 45/82 (54%)
Query: 17 EIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
EI+L + N HI D SIY+TK+I GGAA DGRLQ+ D I VN V
Sbjct: 100 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG 159
Query: 77 VVDVPHSAAVEALKRAGNVVTL 98
+ DV H AV ALK +VV L
Sbjct: 160 LEDVMHEDAVAALKNTYDVVYL 181
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 60/85 (70%)
Query: 14 EYEEIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVN 73
EYEEI LER TDNPHIGDD+SI+ITK+I GGAAA DGRL+VND I +VN
Sbjct: 1 EYEEITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVN 60
Query: 74 HVTVVDVPHSAAVEALKRAGNVVTL 98
V DV HS AVEALK AG++V L
Sbjct: 61 EADVRDVTHSKAVEALKEAGSIVRL 85
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 61/85 (71%)
Query: 14 EYEEIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVN 73
EYEEI LER TDNPHIGDD SI+ITK+IPGGAAA DGRL+VND I VN
Sbjct: 1 EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 60
Query: 74 HVTVVDVPHSAAVEALKRAGNVVTL 98
V V +V HSAAVEALK AG++V L
Sbjct: 61 EVDVREVTHSAAVEALKEAGSIVRL 85
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 61/85 (71%)
Query: 14 EYEEIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVN 73
EYEEI LER TDNPHIGDD SI+ITK+IPGGAAA DGRL+VND I VN
Sbjct: 1 EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 60
Query: 74 HVTVVDVPHSAAVEALKRAGNVVTL 98
V V +V HSAAVEALK AG++V L
Sbjct: 61 EVDVREVTHSAAVEALKEAGSIVRL 85
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 61/86 (70%)
Query: 13 WEYEEIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQV 72
EYEEI LER TDNPHIGDD SI+ITK+IPGGAAA DGRL+VND I V
Sbjct: 11 MEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 70
Query: 73 NHVTVVDVPHSAAVEALKRAGNVVTL 98
N V V +V HSAAVEALK AG++V L
Sbjct: 71 NEVDVREVTHSAAVEALKEAGSIVRL 96
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 45/82 (54%)
Query: 17 EIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
EI+L + N HI D SIY+TK+I GGAA DGRLQ+ D I VN V
Sbjct: 110 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG 169
Query: 77 VVDVPHSAAVEALKRAGNVVTL 98
+ DV H AV ALK +VV L
Sbjct: 170 LEDVMHEDAVAALKNTYDVVYL 191
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 55/83 (66%)
Query: 11 SEWEYEEIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
S ++YEEI LER DNPH+ DD I+ITK+IPGGAAA DGRL VND +
Sbjct: 1 SMFKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVL 60
Query: 71 QVNHVTVVDVPHSAAVEALKRAG 93
+VN V V +V HS AVEALK AG
Sbjct: 61 RVNEVDVSEVVHSRAVEALKEAG 83
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 52/113 (46%), Gaps = 27/113 (23%)
Query: 17 EIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
EI+L + N HI D SIY+TK+I GGAA DGRLQV D + VN+ +
Sbjct: 27 EIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYS 86
Query: 77 VVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEEAVATLKATHERVNLLIGK 129
LE VTHEEAVA LK T E V L +GK
Sbjct: 87 ---------------------------LEEVTHEEAVAILKNTSEVVYLKVGK 112
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 45/82 (54%)
Query: 17 EIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
EI+L + N HI D SIY+TK+I GGAA DGRLQ+ D I VN V
Sbjct: 6 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG 65
Query: 77 VVDVPHSAAVEALKRAGNVVTL 98
+ DV H AV ALK +VV L
Sbjct: 66 LEDVMHEDAVAALKNTYDVVYL 87
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%)
Query: 37 NPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVV 96
N HI D SIYITK+I GGAA DGRLQ+ D + VN+ + DV H AV +LK ++V
Sbjct: 26 NQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMV 85
Query: 97 TL 98
L
Sbjct: 86 YL 87
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%)
Query: 17 EIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
EI+L + N HI D SIY+TK+I GGAA DG+LQ+ D + VN+V
Sbjct: 14 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVC 73
Query: 77 VVDVPHSAAVEALKRAGNVVTL 98
+ +V H AV ALK + V L
Sbjct: 74 LEEVTHEEAVTALKNTSDFVYL 95
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%)
Query: 17 EIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
EI+L + N HI D SIY+TK+I GGAA DG+LQ+ D + VN+V
Sbjct: 12 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVC 71
Query: 77 VVDVPHSAAVEALKRAGNVVTL 98
+ +V H AV ALK + V L
Sbjct: 72 LEEVTHEEAVTALKNTSDFVYL 93
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%)
Query: 17 EIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
EI+L + N HI D SIY+TK+I GGAA DG+LQ+ D + VN+V
Sbjct: 2 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVC 61
Query: 77 VVDVPHSAAVEALKRAGNVVTL 98
+ +V H AV ALK + V L
Sbjct: 62 LEEVTHEEAVTALKNTSDFVYL 83
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%)
Query: 17 EIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
EI+L + N HI D SIY+TK+I GGAA DG+LQ+ D + VN V+
Sbjct: 6 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVS 65
Query: 77 VVDVPHSAAVEALKRAGNVVTL 98
+ +V H AV ALK + V L
Sbjct: 66 LEEVTHEEAVTALKNTSDFVYL 87
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 44/82 (53%)
Query: 17 EIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
EI+L + N HI D SIY+TK+I GGAA DG+LQ+ D + VN V
Sbjct: 6 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVC 65
Query: 77 VVDVPHSAAVEALKRAGNVVTL 98
+ +V H AV ALK + V L
Sbjct: 66 LEEVTHEEAVTALKNTSDFVYL 87
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 44/82 (53%)
Query: 17 EIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
EI+L + N HI D SIY+TK+I GGAA DG+LQ+ D + VN V
Sbjct: 1 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVC 60
Query: 77 VVDVPHSAAVEALKRAGNVVTL 98
+ +V H AV ALK + V L
Sbjct: 61 LEEVTHEEAVTALKNTSDFVYL 82
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 44/82 (53%)
Query: 17 EIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
EI+L + N HI D SIY+TK+I GGAA DG+LQ+ D + VN V
Sbjct: 6 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVG 65
Query: 77 VVDVPHSAAVEALKRAGNVVTL 98
+ +V H AV ALK + V L
Sbjct: 66 LEEVTHEEAVTALKNTSDFVYL 87
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 44/82 (53%)
Query: 17 EIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
EI+L + N H D SIY+TK+I GGAA DG+LQ+ D + VN+V
Sbjct: 11 EIKLIKGPKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVA 70
Query: 77 VVDVPHSAAVEALKRAGNVVTL 98
+ +V H AV ALK + V L
Sbjct: 71 LEEVTHEEAVTALKNTSDFVYL 92
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 39/62 (62%)
Query: 37 NPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVV 96
N H D SIY+TK+I GGAA DG+LQ+ D + VN+V + +V H AV ALK + V
Sbjct: 25 NQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFV 84
Query: 97 TL 98
L
Sbjct: 85 YL 86
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%)
Query: 17 EIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
EI+L + N HI D SIY+T ++ GGAA DG+LQ+ D + VN V
Sbjct: 6 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVG 65
Query: 77 VVDVPHSAAVEALKRAGNVVTL 98
+ +V H AV ALK + V L
Sbjct: 66 LEEVTHEEAVTALKNTSDFVYL 87
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 16 EEIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHV 75
EEI L R TD ++ +D+ IY++++ GAAA DGRLQ D I VN
Sbjct: 9 EEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQ 68
Query: 76 TVVDVPHSAAVEALKRAGNVVTLLGEKNLE 105
+ ++ H AV+ + AG V+L + LE
Sbjct: 69 DLKNLLHQDAVDLFRNAGYAVSLRVQHRLE 98
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%)
Query: 16 EEIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHV 75
EEI L R TD ++ +D+ IY++++ GAAA DGRLQ D I VN
Sbjct: 19 EEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQ 78
Query: 76 TVVDVPHSAAVEALKRAGNVVTL 98
+ ++ H AV+ + AG V+L
Sbjct: 79 DLKNLLHQDAVDLFRNAGYAVSL 101
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 36/59 (61%)
Query: 36 DNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGN 94
D G+ T IY+ LIPG AAA DGR++ ND I +V+ V V + S VE L+ AGN
Sbjct: 36 DQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGN 94
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 102
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%)
Query: 16 EEIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHV 75
EEI L R TD ++ +D+ IY++++ GAAA DGRLQ D I VN
Sbjct: 11 EEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQ 70
Query: 76 TVVDVPHSAAVEALKRAGNVVTL 98
+ ++ H AV+ + AG V+L
Sbjct: 71 DLKNLLHQDAVDLFRNAGYAVSL 93
>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse
Tjp2
Length = 117
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 13 WEYEEIRLER-XXXXXXXXXXXXTDNPHI-GDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
WE + L++ DNPH +TSI I+ ++PGG A DG LQ ND +
Sbjct: 13 WEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQENDRVV 70
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
VN + DV HS AV+ L+++G + ++
Sbjct: 71 MVNGTPMEDVLHSFAVQQLRKSGKIAAIV 99
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKN 103
IY+ +IP GAA SDGR+ D + VN V++ H AVE L+ G VV LL EK
Sbjct: 43 GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 101
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKN 103
IY+ +IP GAA SDGR+ D + VN V++ H AVE L+ G VV LL EK
Sbjct: 41 GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 99
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKN 103
IY+ +IP GAA SDGR+ D + VN V++ H AVE L+ G VV LL EK
Sbjct: 33 GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 91
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKN 103
IY+ +IP GAA SDGR+ D + VN V++ H AVE L+ G VV LL EK
Sbjct: 38 GIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 96
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKN 103
IY+ +IP GAA SDGR+ D + VN V++ H AVE L+ G VV LL EK
Sbjct: 34 GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 92
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 37 NPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVV 96
NP D I+I+K+ P GAA DGRL+V + +VN +++ + H AV+ L+ G+ +
Sbjct: 37 NPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTL 96
Query: 97 TLL 99
T+L
Sbjct: 97 TVL 99
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKN 103
IY+ +IP GAA SDGR+ D + VN V++ H AVE L+ G VV LL EK
Sbjct: 34 GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 92
>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And
Claudins Upon Binding To The 1st Pdz Domain Of Zonula
Occludens 1
Length = 100
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 8 GGDSEWEYEEIRLERX-XXXXXXXXXXXTDNPHI-GDDTSIYITKLIPGGAAASDGRLQV 65
G D WE + L R DNPH +TSI I+ ++ GG A +G+LQ
Sbjct: 4 GSDHIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQE 61
Query: 66 NDVIHQVNHVTVVDVPHSAAVEALKRAG 93
ND + VN V++ +V H+ AV+ L+++G
Sbjct: 62 NDRVAMVNGVSMDNVEHAFAVQQLRKSG 89
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 41 GDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA 92
G D I+I +I GGAA DGRL++ND + VN T++ + A+E L+R+
Sbjct: 52 GTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRS 103
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 39 HIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
H G+ + IY+ +IPG AA +G +QVND I V+ V + + VE L+ AG VV L
Sbjct: 41 HTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHL 100
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA 92
D I++ +I GGAA+ DGRL+VND + VN +++ + A+E L+R+
Sbjct: 38 DLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLRRS 87
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA 92
D I++ +I GGAA+ DGRL+VND + VN +++ + A+E L+R+
Sbjct: 35 DLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLRRS 84
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 16 EEIRLERXXXXXXXXXXXXTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHV 75
+ I LER +PH D IY+ + GAA+ DGRL+ D I VN
Sbjct: 27 KSITLERGPDGLGFSIVGGYGSPH--GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQ 84
Query: 76 TVVDVPHSAAVEALKRAGNVVTLL 99
++ V H AV LKR VTL+
Sbjct: 85 SLEGVTHEEAVAILKRTKGTVTLM 108
>pdb|2H3M|A Chain A, Crystal Structure Of Zo-1 Pdz1
Length = 97
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 13 WEYEEIRLERX-XXXXXXXXXXXTDNPHI-GDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
WE + L R DNPH +TSI I+ ++ GG A +G+LQ ND +
Sbjct: 6 WEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVA 63
Query: 71 QVNHVTVVDVPHSAAVEALKRAG 93
VN V++ +V H+ AV+ L+++G
Sbjct: 64 MVNGVSMDNVEHAFAVQQLRKSG 86
>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived
Ligand (Wrrttwv)
Length = 107
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Query: 36 DNPHI-GDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAG 93
DNPH +TSI I+ ++ GG A +G+LQ ND + VN V++ +V H+ AV+ L+++G
Sbjct: 30 DNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSG 86
>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived
Ligand (wrrttyl)
Length = 107
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Query: 36 DNPHI-GDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAG 93
DNPH +TSI I+ ++ GG A +G+LQ ND + VN V++ +V H+ AV+ L+++G
Sbjct: 30 DNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSG 86
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA-GNVVTLLG 100
I++ + GGAA DGR+QVND I +V+ +++V V + A L+ GNV ++G
Sbjct: 112 GIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIG 168
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 42 DDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGE 101
D I+++ ++ GG A G L+ D I VN V + + H A ALKRAG VT++ +
Sbjct: 37 DGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQ 96
Query: 102 KNLENVTHEEA 112
E + E+
Sbjct: 97 YRPEEYSRFES 107
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 42 DDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGE 101
D I+++ ++ GG A G L+ D I VN V + + H A ALKRAG VT++ +
Sbjct: 34 DGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQ 93
Query: 102 KNLENVTHEEA 112
E + E+
Sbjct: 94 YRPEEYSRFES 104
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 38 PHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVT 97
P+ GDD I+I+++ G AA G ++V D + +VN V + H AVEAL+ AG V
Sbjct: 40 PYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQ 98
Query: 98 L 98
+
Sbjct: 99 M 99
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA-GNVVTLLGEK 102
I++ + GGAA DGR+QVND I +V+ +++V V + A L+ GNV ++G +
Sbjct: 41 GIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE 99
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA-GNVVTLLGEK 102
I++ + GGAA DGR+QVND++ +V+ ++V V S A L+ G V ++G +
Sbjct: 113 IFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA-GNVVTLLGEK 102
I++ + GGAA DGR+QVND++ +V+ ++V V S A L+ G V ++G +
Sbjct: 112 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 42 DDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGE 101
D I+++ ++ GG A G LQ D I VN + + H A ALK AG VT++ +
Sbjct: 25 DGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALKGAGQTVTIIAQ 84
Query: 102 KNLENVTHEEA 112
E+ EA
Sbjct: 85 YQPEDYARFEA 95
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA-GNVVTLLGEK 102
I++ + GGAA DGR+QVND I +V+ +++V V + A L+ GNV ++G +
Sbjct: 36 GIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE 94
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human
Scrib1
Length = 97
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 37 NPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVV 96
P+ GDD I+I+++ G AA G ++V D + +VN V + H AVEAL+ AG V
Sbjct: 27 TPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAV 85
Query: 97 TL 98
+
Sbjct: 86 QM 87
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
D IY+ + PGG + DGR++ D++ V+ V + +V S AV LKR + + L
Sbjct: 52 DLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVL 107
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 42 DDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGE 101
D I+I+ ++ GG A G L+ D I VN V + + H A ALK AG VT++ +
Sbjct: 36 DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQ 95
Query: 102 KNLENVTHEEA 112
E + EA
Sbjct: 96 YKPEEYSRFEA 106
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 42 DDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGE 101
D I+I+ ++ GG A G L+ D I VN V + + H A ALK AG VT++ +
Sbjct: 36 DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQ 95
Query: 102 KNLENVTHEEA 112
E + EA
Sbjct: 96 YKPEEYSRFEA 106
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 42 DDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
D IY+ ++ GGAA DGRL D + V+ ++V + A E + R +VVTL
Sbjct: 30 DKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTL 86
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
Length = 106
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 42 DDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
D IY+ ++ GGAA DGRL D + V+ ++V + A E + R +VVTL
Sbjct: 36 DKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTL 92
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery
Of Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 42 DDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
D IY+ ++ GGAA DGRL D + V+ ++V + A E + R +VVTL
Sbjct: 36 DKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTL 92
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+YI L+PG AA+DGRL + D I +VN +++ + + AV+ ++ G + L
Sbjct: 37 GLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFL 91
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 42 DDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
D IY+ ++ GGAA DGRL D + V+ ++V + A E + R +VVTL
Sbjct: 30 DKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTL 86
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA-GNVVTLLGEKN 103
I++ + GGAA DGR+QVND++ +V+ ++V V S A L+ G V ++G +
Sbjct: 36 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRER 95
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
IYI+++IPGG A G L+ D + VN V+V H AVE LK A V L+
Sbjct: 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLV 85
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 37 NPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVV 96
P+ D I+++++ GGAA G LQV D + +N V V + H AV L A +
Sbjct: 31 TPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTI 90
Query: 97 TLLGEK 102
LL E+
Sbjct: 91 ALLLER 96
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
D IYI ++ GGA A+DGR++ D++ QVN V ++ + AV L+
Sbjct: 25 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLR 72
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+Y+ +L G A +GR++V D I ++N + D+ H+ A+E +K G V LL
Sbjct: 38 LYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLL 91
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With
Its Inhibitor
Length = 90
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
D IYI ++ GGA A+DGR++ D++ QVN V ++ + AV L+
Sbjct: 28 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLR 75
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKNL 104
I+I+ ++ GG A G L+ D I VN V + + H A ALK AG VT++ +
Sbjct: 31 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 90
Query: 105 ENVTHEEA 112
E + EA
Sbjct: 91 EEYSRFEA 98
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKNL 104
I+I+ ++ GG A G L+ D I VN V + + H A ALK AG VT++ +
Sbjct: 36 GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 95
Query: 105 ENVTHEEA 112
E + EA
Sbjct: 96 EEYSRFEA 103
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
D IYI ++ GGA A+DGR++ D++ QVN + ++ + AV L+
Sbjct: 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
D IYI ++ GGA A+DGR++ D++ QVN + ++ + AV L+
Sbjct: 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
D IYI ++ GGA A+DGR++ D++ QVN + ++ + AV L+
Sbjct: 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled
2 (Homologous To Drosophila Dsh)
Length = 100
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
D IYI ++ GGA A+DGR++ D++ QVN + ++ + AV L+
Sbjct: 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
D IYI ++ GGA A+DGR++ D++ QVN + ++ + AV L+
Sbjct: 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
I I+K+ PG AA L++ D I VN + H AV+ALKRAG V L
Sbjct: 31 ILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVLL 83
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 37 NPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVV 96
NP DD I++T++ P G A+ LQ D I Q N + +++ H AV LK N V
Sbjct: 18 NPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTV 75
Query: 97 TLLGEKNLENVTHEE 111
L+ + + N +E
Sbjct: 76 ELIIVREVGNGAKQE 90
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 37 NPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVV 96
NP DD I++T++ P G A+ LQ D I Q N + +++ H AV LK N V
Sbjct: 17 NPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTV 74
Query: 97 TLLGEKNLENVTHEE 111
L+ + + N +E
Sbjct: 75 ELIIVREVGNGAKQE 89
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+Y+ +L G A G++++ D I ++N T ++ HS A+E +K G V L
Sbjct: 51 LYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLF 104
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 30/99 (30%)
Query: 41 GDDT---SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVT 97
G DT +I I ++ GAAA DGRL D I +VN V
Sbjct: 37 GKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGV---------------------- 74
Query: 98 LLGEKNLENVTHEEAVATLKATHERVNLLIGKFEPALRN 136
+L N +HEEA+ L+ T ++V L++ + E R+
Sbjct: 75 -----DLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRD 108
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 40 IGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
IG IY+ ++P GAA DGRL+ D + +VN V +V V L+
Sbjct: 54 IGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLR 104
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 37 NPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVV 96
NP DD I++T++ P G A+ LQ D I Q N + +++ H AV LK N V
Sbjct: 28 NPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTV 85
Query: 97 TLL 99
L+
Sbjct: 86 ELI 88
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
D IYI + GGA A+DGR++ D + QVN + + + AV L+
Sbjct: 26 DGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR 73
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
+ I+ LI GGAA G +Q D+I VN +VD+ + +A+E L+
Sbjct: 30 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLR 74
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 37 NPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVV 96
NP DD I++T++ P G A+ LQ D I Q N + +++ H AV LK N V
Sbjct: 36 NPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTV 93
Query: 97 TLL 99
L+
Sbjct: 94 ELI 96
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In
Human Cdna, Kiaa1095
Length = 107
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA 92
I+++K++ G AA +G LQ++D I +VN + H AVEA K A
Sbjct: 43 IFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTA 89
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
+ I+ LI GGAA G +Q D+I VN +VD+ + +A+E L+
Sbjct: 28 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLR 72
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated
Peptide
Length = 127
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
+ I+ LI GGAA G +Q D+I VN +VD+ + +A+E L+
Sbjct: 35 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLR 79
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
Length = 98
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
D IYI + GGA A+DGR++ D + QVN + + + AV L+
Sbjct: 28 DGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR 75
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Inad- Like Protein
Length = 111
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 41 GDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
G + + + ++PGG A DGRLQ D I ++ V + + L+ GN V +L
Sbjct: 35 GKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRML 93
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
D IYI + GGA A+DGR++ D + QVN + + + AV L+
Sbjct: 28 DGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR 75
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 35 TDNPHIGD--DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEAL-KR 91
+ NP D D IY+T++ GG A G LQ+ D I QVN + V H A + L KR
Sbjct: 53 SQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKR 111
Query: 92 AGNVVTLL 99
+ VV LL
Sbjct: 112 SEEVVRLL 119
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues
450-558)
Length = 111
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 40 IGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
IG IY+ ++P GAA DGRL+ D + +VN V + V L+
Sbjct: 35 IGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLR 85
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 35 TDNPHIGD--DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEAL-KR 91
+ NP D D IY+T++ GG A G LQ+ D I QVN + V H A + L KR
Sbjct: 42 SQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKR 100
Query: 92 AGNVVTLL 99
+ VV LL
Sbjct: 101 SEEVVRLL 108
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 42 DDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAV 86
DD IYI+++ P AA DGR++ D I Q+N + V + + A+
Sbjct: 46 DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVAL 90
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 35 TDNPHIGD--DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEAL-KR 91
+ NP D D IY+T++ GG A G LQ+ D I QVN + V H A + L KR
Sbjct: 42 SQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKR 100
Query: 92 AGNVVTLL 99
+ VV LL
Sbjct: 101 SEEVVRLL 108
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 42 DDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
+DT ++++ ++ GG A +DGRL D I VN V + A LK + VTL
Sbjct: 27 NDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTL 83
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 35 TDNPHIGD--DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEAL-KR 91
+ NP D D IY+T++ GG A G LQ+ D I QVN + V H A + L KR
Sbjct: 42 SQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKR 100
Query: 92 AGNVVTLL 99
+ VV LL
Sbjct: 101 SEEVVRLL 108
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 35 TDNPHIGD--DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEAL-KR 91
+ NP D D IY+T++ GG A G LQ+ D I QVN + V H A + L KR
Sbjct: 43 SQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKR 101
Query: 92 AGNVVTLL 99
+ VV LL
Sbjct: 102 SEEVVRLL 109
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 40 IGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
IG IY+ ++P GAA DGRL+ D + +VN V + V L+
Sbjct: 29 IGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLR 79
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEAL-KRAGNVVTLL 99
D IY+T++ GG A G LQ+ D I QVN + V H A + L KR+ VV LL
Sbjct: 42 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 98
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
I+I++L+PGG A S G L VND + +VN + V
Sbjct: 67 IFISRLVPGGLAQSTGLLAVNDEVLEVNGIEV 98
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEAL-KRAGNVVTLL 99
D IY+T++ GG A G LQ+ D I QVN + V H A + L KR+ VV LL
Sbjct: 44 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 100
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
I+I++L+PGG A S G L VND + +VN + V
Sbjct: 42 IFISRLVPGGLAESTGLLAVNDEVIEVNGIEV 73
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
I+I++L+PGG A S G L VND + +VN + V
Sbjct: 40 IFISRLVPGGLAESTGLLAVNDEVIEVNGIEV 71
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
I+I++L+PGG A S G L VND + +VN + V
Sbjct: 68 IFISRLVPGGLAESTGLLAVNDEVIEVNGIEV 99
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
I+I++L+PGG A S G L VND + +VN + V
Sbjct: 68 IFISRLVPGGLAESTGLLAVNDEVIEVNGIEV 99
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA 92
I+I+K+IP A G LQ D + VN V D+ HS AVE LK A
Sbjct: 43 IFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTA 88
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 48 ITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
I ++I G A +L+V D I VN +++++PH+ V+ +K AG VTL
Sbjct: 47 IGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTL 97
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
I+I ++ A +G L+ D I +V+ + + D H AVEA+++AGN V +
Sbjct: 41 IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFM 94
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
D + + +IP G AA DG+++ DVI +N V V+ H+ V+ +
Sbjct: 43 DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQ 90
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA 92
IYI ++P GAA +DGRL+ D + V+ V+ H V+ +++A
Sbjct: 29 IYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQA 75
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
I+I ++ A +G L+ D I +V+ + + D H AVEA+++AGN V +
Sbjct: 61 IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFM 114
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA 92
+YI ++IPGG DGRL+ D + +N +++ V A + RA
Sbjct: 43 VYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRA 89
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
I+I +++ A L+ D I +V+ V + + HS AVEA+K AGN V +
Sbjct: 52 IFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFI 105
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 39 HIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
I DT ++ ++I G+ A L D + ++N V V H+ VE ++++GN VTL
Sbjct: 32 RIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTL 91
Query: 99 LGEKNLENVTHEEAV 113
L L+ ++E+AV
Sbjct: 92 L---VLDGDSYEKAV 103
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 39 HIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
I DT ++ ++I G+ A L D + ++N V V H+ VE ++++GN VTL
Sbjct: 21 RIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTL 80
Query: 99 LGEKNLENVTHEEAV 113
L L+ ++E+AV
Sbjct: 81 L---VLDGDSYEKAV 92
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 39 HIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
I DT ++ ++I G+ A L D + ++N V V H+ VE ++++GN VTL
Sbjct: 20 RIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTL 79
Query: 99 LGEKNLENVTHEEAV 113
L L+ ++E+AV
Sbjct: 80 L---VLDGDSYEKAV 91
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 27/88 (30%)
Query: 42 DDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGE 101
D+ ++I L+ GG AA DGRL ND + +N
Sbjct: 27 DEPGVFILDLLEGGLAAQDGRLSSNDRVLAING--------------------------- 59
Query: 102 KNLENVTHEEAVATLKATHERVNLLIGK 129
+L+ T E A ++A+ ERVNL I +
Sbjct: 60 HDLKYGTPELAAQIIQASGERVNLTIAR 87
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKNL 104
SI++ + P G AA+DGR+++ D + ++N+ + H A +K A + V L+ +N
Sbjct: 52 SIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNE 111
Query: 105 ENVTH 109
+ V
Sbjct: 112 DAVNQ 116
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 47 YITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+I ++ GG A G L+ DVI +VN V V+D P+ V+ ++ +G VTLL
Sbjct: 34 FIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLL 85
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
Length = 91
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 47 YITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+I ++ GG A G L+ DVI +VN V V+D P+ V+ ++ +G VTLL
Sbjct: 30 FIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLL 81
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 47 YITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+I ++ GG A G L+ DVI +VN V V+D P+ V+ ++ +G VTLL
Sbjct: 30 FIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLL 81
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
IY++ + PG A +G L+V D I +VN ++ V H+ AV+ALK
Sbjct: 37 IYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALK 80
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 74 HVTVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEEAVATLKATHERV 123
+V++V+ P S A + R G+ + + +K+L VTH EAV LK + + V
Sbjct: 38 YVSLVE-PGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLV 86
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 33.5 bits (75), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 87 EALKRAGNVVTLLGEKNLENVTHEEAVATLKATHERVNL---LIGKFEPALRNSTNHLAH 143
EAL ++++ GE +L + TH+EAV LK T + V L + + P +NS +
Sbjct: 120 EALFVGDAILSVNGE-DLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSV 178
Query: 144 PSDIPSSPNPSLTKEPMPPPPQ 165
D P P L ++P P PQ
Sbjct: 179 GWDSP--PASPLQRQPSSPGPQ 198
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 42 DDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGE 101
D I+I+ ++ GG A G L+ D I VN V + H A ALK AG VT++ +
Sbjct: 29 DGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQ 88
Query: 102 KNLENVTHEEA 112
E + + A
Sbjct: 89 YRPEEYSRQHA 99
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 39 HIGDD----TSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGN 94
+IGD + I++ + A DGR+Q+ D I V+ + + AVE L+ G
Sbjct: 24 YIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQ 83
Query: 95 VVTL 98
V L
Sbjct: 84 TVLL 87
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+Y+T + P G A G L +D + +VN V D H VE +K++G+ V L
Sbjct: 34 VYMTDITPQGVAMRAGVL-ADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFL 86
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 40 IGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAG 93
+ DT + + L+ G A GRL+V D++ +N + + H+ AVE ++ G
Sbjct: 34 VAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGG 87
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 30/95 (31%)
Query: 41 GDDT---SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVT 97
G DT +I I ++ GAA DGRL D I +VN +
Sbjct: 24 GSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGI---------------------- 61
Query: 98 LLGEKNLENVTHEEAVATLKATHERVNLLIGKFEP 132
+L TH+EA+ L+ T +RV L + + E
Sbjct: 62 -----DLRKATHDEAINVLRQTPQRVRLTLYRDEA 91
>pdb|2DB5|A Chain A, Solution Structure Of The First Pdz Domain Of Inad-Like
Protein
Length = 128
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 26/84 (30%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKNLE 105
I++ + PG A D RL+ ND I +NH T +D +
Sbjct: 56 IFVKDVQPGSVADRDQRLKENDQILAINH-TPLD-------------------------Q 89
Query: 106 NVTHEEAVATLKATHERVNLLIGK 129
N++H++A+A L+ T + L++ +
Sbjct: 90 NISHQQAIALLQQTTGSLRLIVAR 113
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 72 VNHVTVVDVPHSAAVEALKRAGNVVTLLG--EKNLENVTHEEAVATLKATHERVNLL 126
V++ V+DVP A+ EA+K+A + L +KN EN EEA K E +L
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN--KEEAERRFKQVAEAYEVL 63
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
D + I L+ G AA DG+++ DVI VN V+ H+ V+ +
Sbjct: 42 DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQ 89
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 42 DDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGE 101
D I+I+ ++ GG A G L+ D I VN V + H A ALK AG VT++ +
Sbjct: 26 DGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQ 85
>pdb|1WIF|A Chain A, The Solution Structure Of Rsgi Ruh-020, A Pdz Domain Of
Hypothetical Protein From Mouse
Length = 126
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 48 ITKLIPGGAAASDGRLQVNDVIHQVNHVTVV 78
I+ LI GAAASDG LQ DV+ V H V+
Sbjct: 53 ISHLINKGAAASDGILQPGDVLISVGHANVL 83
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
D + I L+ G AA DG+++ DVI VN V+ H+ V+ +
Sbjct: 24 DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQ 71
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 48 ITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
I K I G+ A L+ ND++ VN +V + H VE +++ G+ TLL
Sbjct: 32 IIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLL 83
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 73 NHVTVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEEAVATLKATHERVNLLI 127
++ VD P S A + RA + + + +N+E + H E VA++KA + LL+
Sbjct: 30 QYIRSVD-PGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 83
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 47 YITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
Y+ + GG A G L++ D + +VN VV V H V +++ GN + +
Sbjct: 68 YLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMV 118
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 48 ITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
I K I G+ A L+ ND++ VN +V + H VE +++ G+ TLL
Sbjct: 33 IIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLL 84
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex
Reveals A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex
Reveals A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex
Reveals A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex
Reveals A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 47 YITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
Y+ + GG A G L++ D + +VN VV V H V +++ GN + +
Sbjct: 48 YLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMV 98
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 47 YITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
Y+ + GG A G L++ D + +VN VV V H V +++ GN + +
Sbjct: 48 YLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMV 98
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The
Hdl-Receptor Sr-Bi With The Pdz3 Domain Of Its Adaptor
Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The
Hdl-Receptor Sr-Bi With The Pdz3 Domain Of Its Adaptor
Protein Pdzk1
Length = 89
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 48 ITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
I K I G+ A L+ ND++ VN +V + H VE +++ G+ TLL
Sbjct: 29 IIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLL 80
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid
Beta A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90
++ I ++ GG A G+L + D I +N ++V +P S +K
Sbjct: 34 TVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIK 79
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA 92
D I+I + P G AA +L+V D I + + + H+ AV LK A
Sbjct: 52 DVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA 101
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGN 94
++ I ++ GG A G+L + D I +N ++V +P S +K N
Sbjct: 30 TVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKN 79
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVP 81
++ + ++ GG AA G+L + D I +N ++V +P
Sbjct: 217 TVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLP 253
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 44 TSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA 92
T I+I ++P A GRL+V D I +N V + A ++ +K A
Sbjct: 37 TGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEA 85
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGN 94
++ I ++ GG A G+L + D I +N ++V +P S +K N
Sbjct: 30 TVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKN 79
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 55 GAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
G+ A + L+ D+I +N +V+ + H VE L ++GN ++L
Sbjct: 44 GSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISL 87
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
+I + ++ GGAA G + V D + +VN + V D ++ L ++ +T
Sbjct: 29 AIIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITF 82
>pdb|2E7K|A Chain A, Solution Structure Of The Pdz Domain From Human Maguk
P55 Subfamily Member 2
Length = 91
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 35 TDNPHIG-----DDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEAL 89
T H+G + + I +++ GG A G L V D+I +VN V P A E L
Sbjct: 15 TAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPR-ALQELL 73
Query: 90 KRAGNVVTL 98
+ A V L
Sbjct: 74 RNASGSVIL 82
>pdb|2PKT|A Chain A, Crystal Structure Of The Human Clp-36 (Pdlim1) Bound To
The C-Terminal Peptide Of Human Alpha-Actinin-1
Length = 91
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 81 PHSAAVEALKRAGNVVTLLGEKNLENVTHEEAVATLKATHERVNLLIGKFE 131
P S A A G+V+T + +N N+TH EA +K + + L + + E
Sbjct: 36 PGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSE 86
>pdb|1M5Z|A Chain A, The Pdz7 Of Glutamate Receptor Interacting Protein Binds
To Its Target Via A Novel Hydrophobic Surface Area
Length = 91
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEK 102
+ +Y+ + P G G L+ D + QVNHV D V + +GN + L+ +
Sbjct: 31 EKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISR 89
Query: 103 N 103
N
Sbjct: 90 N 90
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 63 LQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEEAVATLKATHER 122
L+ D+I Q+N + +L R G+ V ++ E++ + +T V +K+ ++
Sbjct: 300 LKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVTDIKSHEQK 359
Query: 123 V 123
+
Sbjct: 360 L 360
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 63 LQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEEAVATLKATHER 122
L+ D+I Q+N + +L R G+ V ++ E++ + +T V +K+ ++
Sbjct: 300 LKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVTDIKSHEQK 359
Query: 123 V 123
+
Sbjct: 360 L 360
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 63 LQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEEAVATLKATHER 122
L+ D+I Q+N + +L R G+ V ++ E++ + +T V +K +HE+
Sbjct: 300 LKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVTDIK-SHEQ 358
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.129 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,445,624
Number of Sequences: 62578
Number of extensions: 247517
Number of successful extensions: 820
Number of sequences better than 100.0: 191
Number of HSP's better than 100.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 248
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (23.5 bits)