Query psy10226
Match_columns 208
No_of_seqs 170 out of 1747
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 21:06:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3550|consensus 99.7 2.9E-16 6.2E-21 118.2 8.3 91 10-105 86-176 (207)
2 PF00595 PDZ: PDZ domain (Also 99.6 3E-15 6.5E-20 103.3 9.9 78 17-99 1-79 (81)
3 KOG3209|consensus 99.6 1.9E-14 4E-19 130.4 14.9 116 14-134 649-841 (984)
4 KOG3209|consensus 99.6 4.1E-15 8.9E-20 134.5 10.0 87 10-101 894-980 (984)
5 KOG3580|consensus 99.6 8.9E-14 1.9E-18 124.2 14.2 88 9-98 3-92 (1027)
6 KOG1892|consensus 99.5 6.4E-14 1.4E-18 130.1 11.2 85 11-98 930-1014(1629)
7 KOG3551|consensus 99.5 8.2E-14 1.8E-18 118.9 9.8 79 16-99 86-165 (506)
8 KOG3549|consensus 99.5 5.3E-14 1.1E-18 118.7 8.3 88 7-99 47-135 (505)
9 KOG3571|consensus 99.5 1.7E-13 3.8E-18 120.2 10.5 128 2-156 237-365 (626)
10 KOG3553|consensus 99.5 3.3E-13 7E-18 94.8 7.7 88 3-91 4-105 (124)
11 cd00992 PDZ_signaling PDZ doma 99.3 9.8E-11 2.1E-15 80.3 11.0 77 16-98 2-79 (82)
12 smart00228 PDZ Domain present 99.2 4.5E-10 9.7E-15 77.2 11.5 80 15-100 2-81 (85)
13 cd00136 PDZ PDZ domain, also c 99.1 7.8E-10 1.7E-14 73.6 8.9 65 26-98 2-67 (70)
14 KOG3605|consensus 99.0 2.8E-10 6.1E-15 102.8 4.9 110 15-128 646-812 (829)
15 KOG3651|consensus 99.0 8.5E-09 1.8E-13 86.1 10.9 83 15-102 5-88 (429)
16 KOG3606|consensus 98.9 3E-09 6.5E-14 87.5 7.6 83 16-98 160-248 (358)
17 cd00988 PDZ_CTP_protease PDZ d 98.8 6.9E-08 1.5E-12 66.6 8.6 66 25-99 2-68 (85)
18 KOG3552|consensus 98.7 2.2E-08 4.8E-13 93.7 7.5 79 12-102 53-131 (1298)
19 PF13180 PDZ_2: PDZ domain; PD 98.7 5.9E-08 1.3E-12 66.9 6.2 66 26-100 2-69 (82)
20 KOG3580|consensus 98.6 8.6E-07 1.9E-11 80.2 12.0 76 16-102 200-277 (1027)
21 KOG0609|consensus 98.4 8.1E-07 1.8E-11 79.5 8.2 79 15-100 123-202 (542)
22 KOG3542|consensus 98.4 3.4E-07 7.3E-12 83.8 4.6 76 13-94 534-611 (1283)
23 cd00991 PDZ_archaeal_metallopr 98.3 3.8E-06 8.3E-11 57.4 8.2 54 43-99 9-64 (79)
24 cd00990 PDZ_glycyl_aminopeptid 98.3 3.6E-06 7.9E-11 57.2 7.6 44 27-79 3-46 (80)
25 cd00989 PDZ_metalloprotease PD 98.3 6E-06 1.3E-10 55.9 8.1 53 44-99 12-65 (79)
26 PLN00049 carboxyl-terminal pro 98.2 1.1E-05 2.4E-10 71.3 9.4 74 24-100 84-158 (389)
27 COG0793 Prc Periplasmic protea 98.2 4.2E-06 9.1E-11 74.3 6.3 77 18-102 93-170 (406)
28 TIGR00225 prc C-terminal pepti 98.1 9E-06 1.9E-10 70.4 7.9 67 24-99 50-117 (334)
29 KOG3605|consensus 98.1 2.3E-06 5E-11 78.0 4.1 69 17-98 739-809 (829)
30 KOG3938|consensus 98.1 3.8E-06 8.2E-11 69.2 4.2 72 14-92 126-197 (334)
31 cd00987 PDZ_serine_protease PD 98.1 1.7E-05 3.6E-10 54.9 6.7 54 43-99 23-78 (90)
32 PRK11186 carboxy-terminal prot 98.0 2.1E-05 4.6E-10 73.7 7.6 70 24-101 243-318 (667)
33 cd00986 PDZ_LON_protease PDZ d 98.0 5.9E-05 1.3E-09 51.3 8.0 52 44-99 8-61 (79)
34 KOG0606|consensus 97.9 2.2E-05 4.7E-10 75.7 7.1 86 9-98 620-711 (1205)
35 KOG1738|consensus 97.7 0.00011 2.4E-09 67.1 7.8 71 22-99 210-280 (638)
36 TIGR02037 degP_htrA_DO peripla 97.6 0.00015 3.2E-09 64.9 6.4 55 43-100 256-312 (428)
37 TIGR01713 typeII_sec_gspC gene 97.6 0.00028 6E-09 59.1 7.2 54 43-99 190-245 (259)
38 TIGR02037 degP_htrA_DO peripla 97.5 0.00044 9.5E-09 61.9 7.9 53 44-99 362-416 (428)
39 PRK10139 serine endoprotease; 97.5 0.00045 9.7E-09 62.4 7.7 53 44-99 390-442 (455)
40 PRK10942 serine endoprotease; 97.4 0.0005 1.1E-08 62.4 7.7 53 44-99 408-460 (473)
41 PRK10779 zinc metallopeptidase 97.4 0.0012 2.6E-08 59.5 9.7 53 45-100 222-275 (449)
42 PRK10139 serine endoprotease; 97.4 0.00043 9.3E-09 62.5 6.6 55 43-100 289-345 (455)
43 PRK10898 serine endoprotease; 97.3 0.00055 1.2E-08 59.8 6.5 54 43-99 278-333 (353)
44 PRK10942 serine endoprotease; 97.3 0.00063 1.4E-08 61.7 6.7 54 43-99 310-365 (473)
45 TIGR00054 RIP metalloprotease 97.3 0.00092 2E-08 59.8 7.3 53 44-99 203-256 (420)
46 TIGR02038 protease_degS peripl 97.2 0.00066 1.4E-08 59.3 5.9 54 44-100 278-333 (351)
47 PRK10779 zinc metallopeptidase 97.2 0.00047 1E-08 62.2 5.0 54 46-100 128-181 (449)
48 PF04495 GRASP55_65: GRASP55/6 97.0 0.0034 7.5E-08 47.6 7.5 80 14-98 10-96 (138)
49 TIGR02860 spore_IV_B stage IV 96.6 0.014 3.1E-07 51.7 9.0 65 24-101 95-168 (402)
50 TIGR03279 cyano_FeS_chp putati 96.5 0.0016 3.4E-08 58.1 2.1 39 48-89 2-40 (433)
51 KOG4407|consensus 96.4 0.0047 1E-07 60.9 5.2 134 12-147 43-218 (1973)
52 TIGR00054 RIP metalloprotease 96.3 0.006 1.3E-07 54.6 4.7 44 44-90 128-171 (420)
53 COG3975 Predicted protease wit 96.1 0.0056 1.2E-07 55.4 3.6 42 25-75 451-492 (558)
54 KOG1320|consensus 95.9 0.03 6.5E-07 50.5 7.2 54 43-99 397-452 (473)
55 KOG4371|consensus 95.6 0.025 5.4E-07 54.9 5.8 80 14-102 1147-1226(1332)
56 KOG3129|consensus 95.5 0.027 5.8E-07 45.3 4.7 38 43-81 138-175 (231)
57 KOG3532|consensus 95.4 0.051 1.1E-06 50.8 7.0 73 24-106 385-457 (1051)
58 COG0265 DegQ Trypsin-like seri 95.4 0.037 8.1E-07 48.0 6.0 56 43-99 269-324 (347)
59 PF14685 Tricorn_PDZ: Tricorn 95.3 0.093 2E-06 36.7 6.6 55 44-100 12-76 (88)
60 PRK09681 putative type II secr 94.1 0.19 4.1E-06 42.5 6.6 30 58-90 221-250 (276)
61 COG3480 SdrC Predicted secrete 93.6 0.16 3.4E-06 43.5 5.4 55 44-102 130-186 (342)
62 KOG3549|consensus 90.2 1.7 3.8E-05 37.8 7.8 53 78-130 85-139 (505)
63 KOG1421|consensus 89.7 0.76 1.6E-05 43.3 5.6 53 43-99 302-355 (955)
64 COG3031 PulC Type II secretory 89.3 1.7 3.8E-05 35.9 6.8 53 18-90 198-250 (275)
65 KOG4407|consensus 87.9 0.19 4E-06 50.3 0.5 54 45-99 144-197 (1973)
66 PF06663 DUF1170: Protein of u 87.4 0.72 1.6E-05 36.5 3.4 27 182-208 46-74 (189)
67 PF12812 PDZ_1: PDZ-like domai 86.3 2.4 5.1E-05 28.8 5.1 45 45-92 31-75 (78)
68 PF00595 PDZ: PDZ domain (Also 86.1 1.9 4.2E-05 28.8 4.7 38 91-128 44-81 (81)
69 KOG4371|consensus 85.8 1.3 2.8E-05 43.7 4.8 68 17-90 1248-1316(1332)
70 KOG0792|consensus 85.3 0.65 1.4E-05 45.6 2.6 70 25-94 716-799 (1144)
71 KOG3550|consensus 80.9 3 6.5E-05 32.1 4.2 38 92-129 136-173 (207)
72 KOG3834|consensus 78.8 3.8 8.2E-05 36.6 4.7 55 43-98 14-68 (462)
73 KOG1945|consensus 77.8 0.82 1.8E-05 39.7 0.4 83 17-99 102-185 (377)
74 KOG3834|consensus 75.6 4.6 0.0001 36.1 4.4 66 27-98 94-162 (462)
75 KOG2921|consensus 73.3 6.2 0.00014 35.0 4.6 50 40-91 216-265 (484)
76 COG0750 Predicted membrane-ass 69.1 5.3 0.00011 34.8 3.3 33 47-80 132-164 (375)
77 KOG3551|consensus 67.6 23 0.0005 31.6 6.8 38 93-130 132-169 (506)
78 PF11874 DUF3394: Domain of un 64.7 26 0.00056 27.8 6.1 38 27-73 113-150 (183)
79 PRK13810 orotate phosphoribosy 54.4 22 0.00047 28.2 4.1 38 60-97 116-153 (187)
80 KOG1703|consensus 53.0 7.1 0.00015 35.6 1.3 70 26-102 9-78 (479)
81 KOG1421|consensus 47.1 29 0.00063 33.3 4.2 48 43-94 861-908 (955)
82 COG0461 PyrE Orotate phosphori 44.9 40 0.00087 27.2 4.3 41 57-97 103-143 (201)
83 cd00136 PDZ PDZ domain, also c 44.6 77 0.0017 19.8 5.3 37 91-127 32-69 (70)
84 KOG1712|consensus 44.4 1.2E+02 0.0027 23.7 6.6 42 55-96 111-152 (183)
85 TIGR01744 XPRTase xanthine pho 43.9 35 0.00076 27.1 3.8 35 63-97 114-148 (191)
86 COG4273 Uncharacterized conser 42.9 46 0.001 24.8 3.9 71 46-122 48-126 (135)
87 PRK09219 xanthine phosphoribos 42.2 36 0.00079 27.0 3.7 36 62-97 113-148 (189)
88 smart00228 PDZ Domain present 41.1 96 0.0021 19.9 5.4 41 90-130 44-84 (85)
89 PRK05500 bifunctional orotidin 34.7 64 0.0014 29.6 4.4 40 58-97 385-424 (477)
90 PRK09203 rplP 50S ribosomal pr 33.9 42 0.00091 25.3 2.7 36 55-95 89-124 (138)
91 PRK13812 orotate phosphoribosy 33.7 66 0.0014 25.1 3.9 37 60-96 101-137 (176)
92 cd00992 PDZ_signaling PDZ doma 33.4 1.3E+02 0.0029 19.2 5.4 37 91-127 45-81 (82)
93 TIGR00336 pyrE orotate phospho 33.2 63 0.0014 25.0 3.7 36 61-96 103-138 (173)
94 cd01433 Ribosomal_L16_L10e Rib 32.1 43 0.00094 24.1 2.4 35 57-95 70-104 (112)
95 PRK13809 orotate phosphoribosy 31.9 75 0.0016 25.6 4.0 36 61-96 113-148 (206)
96 TIGR01164 rplP_bact ribosomal 31.7 44 0.00095 24.8 2.4 35 55-94 88-122 (126)
97 PF01455 HupF_HypC: HupF/HypC 31.3 60 0.0013 21.3 2.8 28 63-90 38-65 (68)
98 PLN02293 adenine phosphoribosy 30.9 78 0.0017 25.0 3.9 36 61-96 120-155 (187)
99 KOG3552|consensus 30.0 56 0.0012 32.5 3.3 40 91-130 93-132 (1298)
100 PRK12560 adenine phosphoribosy 29.9 87 0.0019 24.7 4.0 35 63-97 111-145 (187)
101 KOG0708|consensus 28.7 55 0.0012 28.8 2.8 37 71-107 2-38 (359)
102 PF03612 EIIBC-GUT_N: Sorbitol 26.2 1.7E+02 0.0037 23.2 4.9 66 17-98 2-76 (183)
103 PRK14367 Maf-like protein; Pro 26.2 3.4E+02 0.0074 21.7 7.3 36 63-98 72-109 (202)
104 PRK09213 pur operon repressor; 25.5 1.2E+02 0.0026 25.6 4.3 35 63-97 193-227 (271)
105 COG0503 Apt Adenine/guanine ph 25.2 1.2E+02 0.0027 23.7 4.1 38 61-98 111-148 (179)
106 PF01436 NHL: NHL repeat; Int 24.7 40 0.00086 17.7 0.8 13 195-207 9-21 (28)
107 COG2144 Selenophosphate synthe 24.3 55 0.0012 28.1 2.0 52 23-74 119-171 (324)
108 COG0197 RplP Ribosomal protein 23.4 36 0.00077 26.0 0.7 38 54-96 91-128 (146)
109 TIGR01743 purR_Bsub pur operon 23.3 1.3E+02 0.0028 25.4 4.0 34 63-96 191-224 (268)
110 CHL00044 rpl16 ribosomal prote 22.0 66 0.0014 24.2 1.9 35 56-95 90-124 (135)
111 PRK06031 phosphoribosyltransfe 20.9 1.3E+02 0.0028 24.8 3.5 35 63-97 151-185 (233)
112 KOG3686|consensus 20.8 1.4E+02 0.0031 28.8 4.2 69 10-92 588-657 (740)
113 PRK10943 cold shock-like prote 20.4 2.6E+02 0.0055 18.1 4.7 44 17-71 7-52 (69)
114 COG1625 Fe-S oxidoreductase, r 20.4 88 0.0019 28.1 2.5 33 47-80 4-37 (414)
115 COG5233 GRH1 Peripheral Golgi 20.2 62 0.0013 28.2 1.5 31 47-78 66-96 (417)
No 1
>KOG3550|consensus
Probab=99.66 E-value=2.9e-16 Score=118.19 Aligned_cols=91 Identities=34% Similarity=0.545 Sum_probs=82.5
Q ss_pred CCCcceEEEEEEeCCCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHH
Q psy10226 10 DSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEAL 89 (208)
Q Consensus 10 ~~~~~~~~v~l~k~~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l 89 (208)
++.-..+.|+|.|-.+||||.+-||++. +.+|||++|.|||.|+|.|.|+.||++++|||+++++..|+.|+++|
T Consensus 86 eghahprvvelpktdeglgfnvmggkeq-----nspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavell 160 (207)
T KOG3550|consen 86 EGHAHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELL 160 (207)
T ss_pred ccCCCCceeecCccccccceeeccCccc-----CCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHH
Confidence 4445567899999899999999999885 78999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEeeeeeCC
Q psy10226 90 KRAGNVVTLLGEKNLE 105 (208)
Q Consensus 90 ~~~~~~v~l~~~~~~~ 105 (208)
+.+.+.|.|++++...
T Consensus 161 kaa~gsvklvvrytpk 176 (207)
T KOG3550|consen 161 KAAVGSVKLVVRYTPK 176 (207)
T ss_pred HHhcCcEEEEEecChH
Confidence 9999999998766443
No 2
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.63 E-value=3e-15 Score=103.30 Aligned_cols=78 Identities=37% Similarity=0.704 Sum_probs=70.8
Q ss_pred EEEEEe-CCCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCE
Q psy10226 17 EIRLER-GGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNV 95 (208)
Q Consensus 17 ~v~l~k-~~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~ 95 (208)
+|.|.| ...+|||.+.++.+.. ..++||..|.++|+|+++| |++||+|++|||+++.+++|.+++.+|+.+++.
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~----~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~ 75 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDND----EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNP 75 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSS----SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSE
T ss_pred CEEEEeCCCCCcCEEEEecCCCC----cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCc
Confidence 478888 5888999999977642 3699999999999999999 999999999999999999999999999999998
Q ss_pred EEEe
Q psy10226 96 VTLL 99 (208)
Q Consensus 96 v~l~ 99 (208)
++|+
T Consensus 76 v~L~ 79 (81)
T PF00595_consen 76 VTLT 79 (81)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 3
>KOG3209|consensus
Probab=99.60 E-value=1.9e-14 Score=130.36 Aligned_cols=116 Identities=31% Similarity=0.469 Sum_probs=104.4
Q ss_pred ceEEEEEEeCCCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhC-
Q psy10226 14 EYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA- 92 (208)
Q Consensus 14 ~~~~v~l~k~~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~- 92 (208)
+..+|.|.|...||||.|.||.+- +++|||..|.+.|+|+++|||+.||.|++|+|++|++.+|.+|+.++..+
T Consensus 649 k~ldV~L~rkesGFGFRiLGG~ep-----~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AA 723 (984)
T KOG3209|consen 649 KELDVFLRRKESGFGFRILGGDEP-----GQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAA 723 (984)
T ss_pred cceeEEEEeeccccceEEecCCCC-----CCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHH
Confidence 445788999899999999998764 78999999999999999999999999999999999999999999999965
Q ss_pred -CCEEEE-------------------------------------------------------------------------
Q psy10226 93 -GNVVTL------------------------------------------------------------------------- 98 (208)
Q Consensus 93 -~~~v~l------------------------------------------------------------------------- 98 (208)
.+.|.|
T Consensus 724 rnghV~LtVRRkv~~~~~~rsp~~s~~~~~~yDV~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDri 803 (984)
T KOG3209|consen 724 RNGHVNLTVRRKVRTGPARRSPRNSAAPSGPYDVVLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRI 803 (984)
T ss_pred hcCceEEEEeeeeeeccccCCcccccCCCCCeeeEEecccCCceeEEEEecccCCCCCccccccCChhHhhccccccceE
Confidence 334555
Q ss_pred --eeeeeCCCCCHHHHHHHHHhcCCeEEEEEccCCccc
Q psy10226 99 --LGEKNLENVTHEEAVATLKATHERVNLLIGKFEPAL 134 (208)
Q Consensus 99 --~~~~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~ 134 (208)
+||.++.+++|.+.++++|.++-.|+|+|..++...
T Consensus 804 lAVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~ee~~ 841 (984)
T KOG3209|consen 804 LAVNGQSILNLSHADIVSLIKDAGLSVTLTIIPPEEAG 841 (984)
T ss_pred EEecCeeeeccCchhHHHHHHhcCceEEEEEcChhccC
Confidence 899999999999999999999999999999886655
No 4
>KOG3209|consensus
Probab=99.60 E-value=4.1e-15 Score=134.54 Aligned_cols=87 Identities=33% Similarity=0.607 Sum_probs=81.3
Q ss_pred CCCcceEEEEEEeCCCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHH
Q psy10226 10 DSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEAL 89 (208)
Q Consensus 10 ~~~~~~~~v~l~k~~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l 89 (208)
.++...++|+|.|+..||||+|+||+.+ .+++||-++.+.|||.++|||++||+|++|||.+..+++|..|+++|
T Consensus 894 ~qn~~~~~VelErG~kGFGFSiRGGrey-----nM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelI 968 (984)
T KOG3209|consen 894 SQNGDLYTVELERGAKGFGFSIRGGREY-----NMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELI 968 (984)
T ss_pred cccCCeeEEEeeccccccceEeeccccc-----ccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHH
Confidence 5678899999999999999999999775 78999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEeee
Q psy10226 90 KRAGNVVTLLGE 101 (208)
Q Consensus 90 ~~~~~~v~l~~~ 101 (208)
++.+..+.|+..
T Consensus 969 k~gg~~vll~Lr 980 (984)
T KOG3209|consen 969 KQGGRRVLLLLR 980 (984)
T ss_pred HhCCeEEEEEec
Confidence 999999888644
No 5
>KOG3580|consensus
Probab=99.55 E-value=8.9e-14 Score=124.25 Aligned_cols=88 Identities=40% Similarity=0.745 Sum_probs=79.2
Q ss_pred CCCCcceEEEEEEeC-CCcccEEEeccCCCCCCCC-CCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHH
Q psy10226 9 GDSEWEYEEIRLERG-GAGLGFSIAGGTDNPHIGD-DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAV 86 (208)
Q Consensus 9 ~~~~~~~~~v~l~k~-~~~lGf~i~gg~~~~~~~~-~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av 86 (208)
++..|+..+|+|.|+ ..|||+.|.||+|+|+++. ...|+|+.|.+|||| .|+|+.||+|+.|||++++++.|.-|+
T Consensus 3 E~~IWEQhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPA--eG~LQenDrvvMVNGvsMenv~haFAv 80 (1027)
T KOG3580|consen 3 EELIWEQHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPA--EGLLQENDRVVMVNGVSMENVLHAFAV 80 (1027)
T ss_pred hhhhhhhheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCc--ccccccCCeEEEEcCcchhhhHHHHHH
Confidence 345799999999997 8899999999999988743 567899999999999 588999999999999999999999999
Q ss_pred HHHHhCCCEEEE
Q psy10226 87 EALKRAGNVVTL 98 (208)
Q Consensus 87 ~~l~~~~~~v~l 98 (208)
+.|+.++....+
T Consensus 81 QqLrksgK~A~I 92 (1027)
T KOG3580|consen 81 QQLRKSGKVAAI 92 (1027)
T ss_pred HHHHhhccceeE
Confidence 999999886554
No 6
>KOG1892|consensus
Probab=99.53 E-value=6.4e-14 Score=130.06 Aligned_cols=85 Identities=31% Similarity=0.534 Sum_probs=76.8
Q ss_pred CCcceEEEEEEeCCCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy10226 11 SEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90 (208)
Q Consensus 11 ~~~~~~~v~l~k~~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~ 90 (208)
.+.++..|+|+|. +|+|++|+..++. +....||||++|.+||+|+.+|||..||+||.|||+++.+++.+.|++++.
T Consensus 930 ~~pei~~vtL~Kn-nGmGLSIVAAkGa--Gq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmt 1006 (1629)
T KOG1892|consen 930 KEPEIITVTLKKN-NGMGLSIVAAKGA--GQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMT 1006 (1629)
T ss_pred cCCceEEEEEecc-CCceEEEEeeccC--CccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHh
Confidence 3577889999886 8999999976665 345889999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEE
Q psy10226 91 RAGNVVTL 98 (208)
Q Consensus 91 ~~~~~v~l 98 (208)
+.|..|.|
T Consensus 1007 rtg~vV~l 1014 (1629)
T KOG1892|consen 1007 RTGNVVHL 1014 (1629)
T ss_pred ccCCeEEE
Confidence 99988888
No 7
>KOG3551|consensus
Probab=99.51 E-value=8.2e-14 Score=118.87 Aligned_cols=79 Identities=42% Similarity=0.607 Sum_probs=74.7
Q ss_pred EEEEEEe-CCCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCC
Q psy10226 16 EEIRLER-GGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGN 94 (208)
Q Consensus 16 ~~v~l~k-~~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~ 94 (208)
+.|++.| +.+|||++|.||+++ ..+|.|++|.+|-+|++.+.|..||.|++|||.++.+.||++||+.||++|.
T Consensus 86 R~V~V~K~d~gGLGISIKGGreN-----kMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGk 160 (506)
T KOG3551|consen 86 RRVRVVKQDAGGLGISIKGGREN-----KMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGK 160 (506)
T ss_pred ceeEEEEecCCcceEEeecCccc-----CCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCc
Confidence 6788888 488999999999997 7799999999999999999999999999999999999999999999999999
Q ss_pred EEEEe
Q psy10226 95 VVTLL 99 (208)
Q Consensus 95 ~v~l~ 99 (208)
.|.|-
T Consensus 161 eV~le 165 (506)
T KOG3551|consen 161 EVLLE 165 (506)
T ss_pred eeeee
Confidence 99884
No 8
>KOG3549|consensus
Probab=99.51 E-value=5.3e-14 Score=118.72 Aligned_cols=88 Identities=36% Similarity=0.543 Sum_probs=81.9
Q ss_pred cCCCCCcceEEEEEEeC-CCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHH
Q psy10226 7 NGGDSEWEYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAA 85 (208)
Q Consensus 7 ~~~~~~~~~~~v~l~k~-~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~a 85 (208)
.|.-++-..++|.|.|. -+|||++|.||.+. ..++.|++|.+.-+|+..|.|.+||-|++|||+.+..++|+++
T Consensus 47 sG~p~~s~eRtVtirRQ~vGGlGLSIKGGaEH-----n~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~Heev 121 (505)
T KOG3549|consen 47 SGPPMESKERTVTIRRQKVGGLGLSIKGGAEH-----NLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEV 121 (505)
T ss_pred CCCCccCCceeEEEEeeecCcceeeecccccc-----CccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHH
Confidence 47777788889999997 67899999999886 6799999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEe
Q psy10226 86 VEALKRAGNVVTLL 99 (208)
Q Consensus 86 v~~l~~~~~~v~l~ 99 (208)
|.+||++|+.|+|+
T Consensus 122 V~iLRNAGdeVtlT 135 (505)
T KOG3549|consen 122 VNILRNAGDEVTLT 135 (505)
T ss_pred HHHHHhcCCEEEEE
Confidence 99999999999994
No 9
>KOG3571|consensus
Probab=99.49 E-value=1.7e-13 Score=120.16 Aligned_cols=128 Identities=23% Similarity=0.322 Sum_probs=101.5
Q ss_pred ccccccCCCCCcceEEEEEEeC-CCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCC
Q psy10226 2 SCEKVNGGDSEWEYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDV 80 (208)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~l~k~-~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~ 80 (208)
|+..+..+.+..++.+|.|..+ ..-||++|+|...+ +++.+|||..|.+||+.+.+|||.+||+||+||.++++++
T Consensus 237 SfSSiTdSsmslnIITV~LnMe~vnfLGiSivgqsn~---rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENm 313 (626)
T KOG3571|consen 237 SFSSITDSSMSLNIITVTLNMETVNFLGISIVGQSNA---RGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENM 313 (626)
T ss_pred ccccccccccceeEEEEEecccccccceeEeecccCc---CCCCceEEeeeccCceeeccCccCccceEEEeeecchhhc
Confidence 6777888999999999999988 45599999997764 4689999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhCCCEEEEeeeeeCCCCCHHHHHHHHHhcCCeEEEEEccCCccccccccccCCCCCCCCCCCCCCC
Q psy10226 81 PHSAAVEALKRAGNVVTLLGEKNLENVTHEEAVATLKATHERVNLLIGKFEPALRNSTNHLAHPSDIPSSPNPSLT 156 (208)
Q Consensus 81 t~~~av~~l~~~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~~~~~~~~~~~~~~s~~~~~~p~~~~ 156 (208)
+.++||+.||++- .....+.|+|.+..+...+.+..+..-.|..+.-|..|.
T Consensus 314 SNd~AVrvLREaV------------------------~~~gPi~ltvAk~~DP~~q~~fTipr~epvrPIDp~awv 365 (626)
T KOG3571|consen 314 SNDQAVRVLREAV------------------------SRPGPIKLTVAKCWDPNPQSYFTIPRGEPVRPIDPAAWV 365 (626)
T ss_pred CchHHHHHHHHHh------------------------ccCCCeEEEEeeccCCCCcccccCCCCCcCCcCCHHHHH
Confidence 9999999999741 222335566766655555556766666655444444443
No 10
>KOG3553|consensus
Probab=99.45 E-value=3.3e-13 Score=94.79 Aligned_cols=88 Identities=34% Similarity=0.521 Sum_probs=72.7
Q ss_pred cccccCCCCCcceEEEEEEeCC----Cc-----ccEEEeccCC-----CCCCCCCCcEEEEEECCCCcccccCCCCCCCE
Q psy10226 3 CEKVNGGDSEWEYEEIRLERGG----AG-----LGFSIAGGTD-----NPHIGDDTSIYITKLIPGGAAASDGRLQVNDV 68 (208)
Q Consensus 3 ~~~~~~~~~~~~~~~v~l~k~~----~~-----lGf~i~gg~~-----~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~ 68 (208)
+.-+-|...+.-...|+|+|.. .| +||.|-||.| +|+...+.|+||..|.+||||+++| |+.+|.
T Consensus 4 ~~h~pG~aveclsi~velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDK 82 (124)
T KOG3553|consen 4 MSHIPGQAVECLSIRVELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDK 82 (124)
T ss_pred cccCCCCceEEEEEEEEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecce
Confidence 3344455555555578888853 33 7999999986 3555568899999999999999999 999999
Q ss_pred EEEECCeecCCCCHHHHHHHHHh
Q psy10226 69 IHQVNHVTVVDVPHSAAVEALKR 91 (208)
Q Consensus 69 Il~Vng~~l~~~t~~~av~~l~~ 91 (208)
|++|||-++.-+||++|+..|++
T Consensus 83 IlQvNG~DfTMvTHd~Avk~i~k 105 (124)
T KOG3553|consen 83 ILQVNGWDFTMVTHDQAVKRITK 105 (124)
T ss_pred EEEecCceeEEEEhHHHHHHhhH
Confidence 99999999999999999999986
No 11
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.27 E-value=9.8e-11 Score=80.28 Aligned_cols=77 Identities=44% Similarity=0.778 Sum_probs=67.2
Q ss_pred EEEEEEeC-CCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCC
Q psy10226 16 EEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGN 94 (208)
Q Consensus 16 ~~v~l~k~-~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~ 94 (208)
+++.+.+. ..+|||.+.++... ..+++|..|.++++|+++| |++||+|++|||..+..+++.++.+.++....
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~-----~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~ 75 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDS-----GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGD 75 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccC-----CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCC
Confidence 56788886 78899999985442 3589999999999999988 99999999999999999999999999998776
Q ss_pred EEEE
Q psy10226 95 VVTL 98 (208)
Q Consensus 95 ~v~l 98 (208)
.+.|
T Consensus 76 ~v~l 79 (82)
T cd00992 76 EVTL 79 (82)
T ss_pred eEEE
Confidence 6665
No 12
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.20 E-value=4.5e-10 Score=77.15 Aligned_cols=80 Identities=44% Similarity=0.723 Sum_probs=67.7
Q ss_pred eEEEEEEeCCCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCC
Q psy10226 15 YEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGN 94 (208)
Q Consensus 15 ~~~v~l~k~~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~ 94 (208)
...+.+.+....|||.+...... ..+++|..|.++++|+++| |++||+|++|||..+.++++.+++.+++..+.
T Consensus 2 ~~~~~~~~~~~~~G~~~~~~~~~-----~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~ 75 (85)
T smart00228 2 PRLVELEKGGGGLGFSLVGGKDE-----GGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGG 75 (85)
T ss_pred cEEEEEEECCCcccEEEECCCCC-----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 34677888777899999874331 1589999999999999999 99999999999999999999999999988776
Q ss_pred EEEEee
Q psy10226 95 VVTLLG 100 (208)
Q Consensus 95 ~v~l~~ 100 (208)
.+.|..
T Consensus 76 ~~~l~i 81 (85)
T smart00228 76 KVTLTV 81 (85)
T ss_pred eEEEEE
Confidence 777643
No 13
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.10 E-value=7.8e-10 Score=73.64 Aligned_cols=65 Identities=42% Similarity=0.611 Sum_probs=57.4
Q ss_pred cccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCC-CEEEE
Q psy10226 26 GLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAG-NVVTL 98 (208)
Q Consensus 26 ~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~-~~v~l 98 (208)
+|||.+.+..+ .+++|..|.++++|+.+| |++||+|++|||..+.+++++++.++|+... ..+.|
T Consensus 2 ~~G~~~~~~~~-------~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l 67 (70)
T cd00136 2 GLGFSIRGGTE-------GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTL 67 (70)
T ss_pred CccEEEecCCC-------CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEE
Confidence 58999988432 389999999999999999 9999999999999999999999999999865 56666
No 14
>KOG3605|consensus
Probab=99.01 E-value=2.8e-10 Score=102.78 Aligned_cols=110 Identities=26% Similarity=0.407 Sum_probs=94.3
Q ss_pred eEEEEEEeC-CCcccEEEec-cCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhC
Q psy10226 15 YEEIRLERG-GAGLGFSIAG-GTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA 92 (208)
Q Consensus 15 ~~~v~l~k~-~~~lGf~i~g-g~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~ 92 (208)
.++|.|.|. ++.||+.|+- |++.- -.-++|..+..+|||+|+|+|-.||+|+.|||.+|.+++...+..+||+.
T Consensus 646 qKEVvv~K~kGEiLGVViVESGWGSm----LPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~ 721 (829)
T KOG3605|consen 646 QKEVVLEKHKGEILGVVIVESGWGSI----LPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGL 721 (829)
T ss_pred cceeeeecccCceeeEEEEecCcccc----chHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcc
Confidence 457888885 8889999874 66542 23467899999999999999999999999999999999999999999987
Q ss_pred CCE--EEE-----------------------------------------------------eeeeeCCCCCHHHHHHHHH
Q psy10226 93 GNV--VTL-----------------------------------------------------LGEKNLENVTHEEAVATLK 117 (208)
Q Consensus 93 ~~~--v~l-----------------------------------------------------~~~~~~~~~~~~~~~~~l~ 117 (208)
++. |+| +|++++..++|+..+++|.
T Consensus 722 KnQT~VkltiV~cpPV~~V~I~RPd~kyQLGFSVQNGiICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs 801 (829)
T KOG3605|consen 722 KNQTAVKLNIVSCPPVTTVLIRRPDLRYQLGFSVQNGIICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLS 801 (829)
T ss_pred cccceEEEEEecCCCceEEEeecccchhhccceeeCcEeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHH
Confidence 764 444 8999999999999999999
Q ss_pred hcCCeEEEEEc
Q psy10226 118 ATHERVNLLIG 128 (208)
Q Consensus 118 ~~~~~~~l~v~ 128 (208)
.+...+++..+
T Consensus 802 ~aVGEIhMKTM 812 (829)
T KOG3605|consen 802 NAVGEIHMKTM 812 (829)
T ss_pred Hhhhhhhhhcc
Confidence 99888877665
No 15
>KOG3651|consensus
Probab=98.95 E-value=8.5e-09 Score=86.10 Aligned_cols=83 Identities=27% Similarity=0.383 Sum_probs=73.6
Q ss_pred eEEEEEEeCC-CcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCC
Q psy10226 15 YEEIRLERGG-AGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAG 93 (208)
Q Consensus 15 ~~~v~l~k~~-~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~ 93 (208)
...|+|.|+. +-.|++|-||...+ .-+||.+|..+.||+++|+++-||.|+.|||+++.+.+..+++++|+.+.
T Consensus 5 ~~~v~ltKD~~nliGISIGGGapyC-----PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~ 79 (429)
T KOG3651|consen 5 SETVELTKDEKNLIGISIGGGAPYC-----PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSL 79 (429)
T ss_pred cCcEEEeeccccceeEEecCCCCcC-----CeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhc
Confidence 3468999974 44799999988764 47899999999999999999999999999999999999999999999999
Q ss_pred CEEEEeeee
Q psy10226 94 NVVTLLGEK 102 (208)
Q Consensus 94 ~~v~l~~~~ 102 (208)
+.|.+..++
T Consensus 80 ~eV~IhyNK 88 (429)
T KOG3651|consen 80 NEVKIHYNK 88 (429)
T ss_pred cceEEEehh
Confidence 999885443
No 16
>KOG3606|consensus
Probab=98.93 E-value=3e-09 Score=87.46 Aligned_cols=83 Identities=31% Similarity=0.559 Sum_probs=68.7
Q ss_pred EEEEEEeC--CCcccEEEeccCC---CCC-CCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHH
Q psy10226 16 EEIRLERG--GAGLGFSIAGGTD---NPH-IGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEAL 89 (208)
Q Consensus 16 ~~v~l~k~--~~~lGf~i~gg~~---~~~-~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l 89 (208)
+.|+|+|. ...|||.|+.|.. .+. .+...||||+++.+||.|+..|.|.++|.||+|||+.+.++|.+|+..|+
T Consensus 160 RRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMM 239 (358)
T KOG3606|consen 160 RRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMM 239 (358)
T ss_pred hheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHH
Confidence 37899994 5679999998773 121 23377999999999999999999999999999999999999999999988
Q ss_pred HhCCCEEEE
Q psy10226 90 KRAGNVVTL 98 (208)
Q Consensus 90 ~~~~~~v~l 98 (208)
-.....+-+
T Consensus 240 vANshNLIi 248 (358)
T KOG3606|consen 240 VANSHNLII 248 (358)
T ss_pred hhcccceEE
Confidence 866554433
No 17
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.76 E-value=6.9e-08 Score=66.59 Aligned_cols=66 Identities=29% Similarity=0.508 Sum_probs=55.2
Q ss_pred CcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHh-CCCEEEEe
Q psy10226 25 AGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKR-AGNVVTLL 99 (208)
Q Consensus 25 ~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~-~~~~v~l~ 99 (208)
.+|||.+... ..+++|..|.++++|+++| |++||+|++|||..+.++++.++..+++. .+..+.|.
T Consensus 2 ~~lG~~~~~~--------~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~ 68 (85)
T cd00988 2 GGIGLELKYD--------DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLT 68 (85)
T ss_pred eEEEEEEEEc--------CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEE
Confidence 4688888651 3479999999999999999 99999999999999999988998888875 35566664
No 18
>KOG3552|consensus
Probab=98.75 E-value=2.2e-08 Score=93.70 Aligned_cols=79 Identities=29% Similarity=0.521 Sum_probs=67.1
Q ss_pred CcceEEEEEEeCCCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHh
Q psy10226 12 EWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKR 91 (208)
Q Consensus 12 ~~~~~~v~l~k~~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~ 91 (208)
.|+.+.|.+.|. ..|||-++.| .+++|..|.+||++ .|+|.+||+|++|||.++++.+++.++.++|.
T Consensus 53 ~~~pr~vq~~r~-~~lGFgfvag---------rPviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRa 120 (1298)
T KOG3552|consen 53 RWEPRQVQLQRN-ASLGFGFVAG---------RPVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRA 120 (1298)
T ss_pred cCcchhhhhhcc-ccccceeecC---------CceEEEEecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHH
Confidence 466777888774 4456555553 37899999999999 58899999999999999999999999999999
Q ss_pred CCCEEEEeeee
Q psy10226 92 AGNVVTLLGEK 102 (208)
Q Consensus 92 ~~~~v~l~~~~ 102 (208)
|...|.|++-+
T Consensus 121 ce~sv~ltV~q 131 (1298)
T KOG3552|consen 121 CESSVNLTVCQ 131 (1298)
T ss_pred HhhhcceEEec
Confidence 99999997666
No 19
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.68 E-value=5.9e-08 Score=66.86 Aligned_cols=66 Identities=33% Similarity=0.527 Sum_probs=49.9
Q ss_pred cccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHH--hCCCEEEEee
Q psy10226 26 GLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK--RAGNVVTLLG 100 (208)
Q Consensus 26 ~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~--~~~~~v~l~~ 100 (208)
.||+.+....+ ..+++|..|.++|||+++| |+.||+|++|||..+.+ ..+....+. ..+..+.|..
T Consensus 2 ~lGv~~~~~~~------~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~~~~g~~v~l~v 69 (82)
T PF13180_consen 2 GLGVTVQNLSD------TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNS--SEDLVNILSKGKPGDTVTLTV 69 (82)
T ss_dssp E-SEEEEECSC------SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSS--HHHHHHHHHCSSTTSEEEEEE
T ss_pred EECeEEEEccC------CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEEEE
Confidence 47888877332 3589999999999999999 99999999999999954 466666664 3466666643
No 20
>KOG3580|consensus
Probab=98.57 E-value=8.6e-07 Score=80.20 Aligned_cols=76 Identities=20% Similarity=0.377 Sum_probs=67.2
Q ss_pred EEEEEEeC--CCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCC
Q psy10226 16 EEIRLERG--GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAG 93 (208)
Q Consensus 16 ~~v~l~k~--~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~ 93 (208)
.-|.|+|. ++.||+.+.. .|||+.|...|.|+++|.|+.||.||+|||+..++++..++-.+|..+.
T Consensus 200 ~kv~LvKsR~nEEyGlrLgS-----------qIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~ 268 (1027)
T KOG3580|consen 200 IKVLLVKSRANEEYGLRLGS-----------QIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSR 268 (1027)
T ss_pred ceEEEEeeccchhhcccccc-----------hhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhcc
Confidence 34566663 7789998876 7999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeeee
Q psy10226 94 NVVTLLGEK 102 (208)
Q Consensus 94 ~~v~l~~~~ 102 (208)
+.+.|++.+
T Consensus 269 GKL~lvVlR 277 (1027)
T KOG3580|consen 269 GKLQLVVLR 277 (1027)
T ss_pred CceEEEEEe
Confidence 888886655
No 21
>KOG0609|consensus
Probab=98.43 E-value=8.1e-07 Score=79.46 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=69.8
Q ss_pred eEEEEEEeC-CCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCC
Q psy10226 15 YEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAG 93 (208)
Q Consensus 15 ~~~v~l~k~-~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~ 93 (208)
.+.|.+.|. +..+|.+++-... . .++|..|..||.|++.|.|++||.|++|||+.+.+..-.++..+|+++.
T Consensus 123 vriv~i~k~~~eplG~Tik~~e~------~-~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~ 195 (542)
T KOG0609|consen 123 VRIVRIVKNTGEPLGATIRVEED------T-KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR 195 (542)
T ss_pred eEEEEEeecCCCccceEEEeccC------C-ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC
Confidence 446888887 8889999987222 2 7899999999999999999999999999999999999999999999999
Q ss_pred CEEEEee
Q psy10226 94 NVVTLLG 100 (208)
Q Consensus 94 ~~v~l~~ 100 (208)
+.+++..
T Consensus 196 G~itfki 202 (542)
T KOG0609|consen 196 GSITFKI 202 (542)
T ss_pred CcEEEEE
Confidence 9888843
No 22
>KOG3542|consensus
Probab=98.38 E-value=3.4e-07 Score=83.81 Aligned_cols=76 Identities=25% Similarity=0.448 Sum_probs=67.7
Q ss_pred cceEEEEEEeC--CCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy10226 13 WEYEEIRLERG--GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90 (208)
Q Consensus 13 ~~~~~v~l~k~--~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~ 90 (208)
.+.+.|.|.|. ...+-|.+.||.+. ..+|||..|.+|+.|++.| |+.||+|++|||.+.++++...|+++|+
T Consensus 534 AK~RqviLtk~sre~pl~f~L~GGsEk-----GfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLr 607 (1283)
T KOG3542|consen 534 AKPRQVILTKASREDPLMFRLVGGSEK-----GFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILR 607 (1283)
T ss_pred ccceeEEEecccccCCceeEeccCccc-----cceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhc
Confidence 34567888884 56699999999886 5699999999999999999 9999999999999999999999999999
Q ss_pred hCCC
Q psy10226 91 RAGN 94 (208)
Q Consensus 91 ~~~~ 94 (208)
+.-.
T Consensus 608 nnth 611 (1283)
T KOG3542|consen 608 NNTH 611 (1283)
T ss_pred CCce
Confidence 8755
No 23
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.34 E-value=3.8e-06 Score=57.40 Aligned_cols=54 Identities=30% Similarity=0.406 Sum_probs=44.9
Q ss_pred CCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCEEEEe
Q psy10226 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA--GNVVTLL 99 (208)
Q Consensus 43 ~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~--~~~v~l~ 99 (208)
..+++|..|.++++|+++| |+.||+|++|||..+.. +.+....|... +..+.|.
T Consensus 9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~--~~d~~~~l~~~~~g~~v~l~ 64 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITT--LEDFMEALKPTKPGEVITVT 64 (79)
T ss_pred CCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCC--HHHHHHHHhcCCCCCEEEEE
Confidence 5589999999999999999 99999999999999984 56777777753 5566664
No 24
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.32 E-value=3.6e-06 Score=57.23 Aligned_cols=44 Identities=23% Similarity=0.210 Sum_probs=37.8
Q ss_pred ccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCC
Q psy10226 27 LGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVD 79 (208)
Q Consensus 27 lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~ 79 (208)
+|+.+... +.++.|..|.++|+|+.+| |++||+|++|||..+.+
T Consensus 3 ~G~~~~~~--------~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~ 46 (80)
T cd00990 3 LGLTLDKE--------EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA 46 (80)
T ss_pred ccEEEEcc--------CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH
Confidence 67777541 3468999999999999999 99999999999999876
No 25
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.29 E-value=6e-06 Score=55.90 Aligned_cols=53 Identities=28% Similarity=0.441 Sum_probs=42.9
Q ss_pred CcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhC-CCEEEEe
Q psy10226 44 TSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA-GNVVTLL 99 (208)
Q Consensus 44 ~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~-~~~v~l~ 99 (208)
..+.|..|.++++|++.| |+.||.|++|||..+.+ +.++...+... +..+.+.
T Consensus 12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~--~~~~~~~l~~~~~~~~~l~ 65 (79)
T cd00989 12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS--WEDLVDAVQENPGKPLTLT 65 (79)
T ss_pred cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHCCCceEEEE
Confidence 357999999999999999 99999999999999985 46676777654 4455553
No 26
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.17 E-value=1.1e-05 Score=71.29 Aligned_cols=74 Identities=24% Similarity=0.379 Sum_probs=56.8
Q ss_pred CCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHh-CCCEEEEee
Q psy10226 24 GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKR-AGNVVTLLG 100 (208)
Q Consensus 24 ~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~-~~~~v~l~~ 100 (208)
..|+|+.+.-..+. .....+++|..|.++|||+++| |+.||+|++|||..+.+++..++..+|+. .+..+.|..
T Consensus 84 ~~GiG~~~~~~~~~--~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv 158 (389)
T PLN00049 84 VTGVGLEVGYPTGS--DGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTL 158 (389)
T ss_pred ceEEEEEEEEccCC--CCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEE
Confidence 45788887642211 0002378999999999999999 99999999999999999988888888874 455666643
No 27
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.15 E-value=4.2e-06 Score=74.30 Aligned_cols=77 Identities=23% Similarity=0.291 Sum_probs=63.3
Q ss_pred EEEEeCCCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHh-CCCEE
Q psy10226 18 IRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKR-AGNVV 96 (208)
Q Consensus 18 v~l~k~~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~-~~~~v 96 (208)
..+..+..|+|+.+.-.. ...+.|..+.+++||+++| |++||.|+.|||.++.+++-++++..|+. .|..|
T Consensus 93 ~~~~~~~~GiG~~i~~~~-------~~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V 164 (406)
T COG0793 93 TDTSGEFGGIGIELQMED-------IGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKV 164 (406)
T ss_pred hhccccccceeEEEEEec-------CCCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeE
Confidence 334445678898888632 1578999999999999999 99999999999999999999999999995 46678
Q ss_pred EEeeee
Q psy10226 97 TLLGEK 102 (208)
Q Consensus 97 ~l~~~~ 102 (208)
+|...+
T Consensus 165 ~L~i~r 170 (406)
T COG0793 165 TLTILR 170 (406)
T ss_pred EEEEEE
Confidence 885444
No 28
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.13 E-value=9e-06 Score=70.41 Aligned_cols=67 Identities=25% Similarity=0.383 Sum_probs=54.5
Q ss_pred CCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHh-CCCEEEEe
Q psy10226 24 GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKR-AGNVVTLL 99 (208)
Q Consensus 24 ~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~-~~~~v~l~ 99 (208)
..++||.+... ..+++|..|.++|||+++| |+.||+|++|||..+.+++..++..+++. .+..+.|.
T Consensus 50 ~~~lG~~~~~~--------~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~ 117 (334)
T TIGR00225 50 LEGIGIQVGMD--------DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLE 117 (334)
T ss_pred eEEEEEEEEEE--------CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEE
Confidence 44688888641 2378999999999999999 99999999999999999877777777764 45566663
No 29
>KOG3605|consensus
Probab=98.12 E-value=2.3e-06 Score=77.97 Aligned_cols=69 Identities=32% Similarity=0.522 Sum_probs=60.9
Q ss_pred EEEEEeC--CCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCC
Q psy10226 17 EIRLERG--GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGN 94 (208)
Q Consensus 17 ~v~l~k~--~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~ 94 (208)
+|.|+|. ..-|||++..| +|.++..||.|+|.| +++|-||++|||.+|....|+..|++|..+-+
T Consensus 739 ~V~I~RPd~kyQLGFSVQNG------------iICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~aVG 805 (829)
T KOG3605|consen 739 TVLIRRPDLRYQLGFSVQNG------------IICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNAVG 805 (829)
T ss_pred EEEeecccchhhccceeeCc------------EeehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHhhh
Confidence 5777774 34599999873 788999999999999 99999999999999999999999999999877
Q ss_pred EEEE
Q psy10226 95 VVTL 98 (208)
Q Consensus 95 ~v~l 98 (208)
.|.+
T Consensus 806 EIhM 809 (829)
T KOG3605|consen 806 EIHM 809 (829)
T ss_pred hhhh
Confidence 6655
No 30
>KOG3938|consensus
Probab=98.08 E-value=3.8e-06 Score=69.22 Aligned_cols=72 Identities=19% Similarity=0.320 Sum_probs=63.5
Q ss_pred ceEEEEEEeCCCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhC
Q psy10226 14 EYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA 92 (208)
Q Consensus 14 ~~~~v~l~k~~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~ 92 (208)
+.++|++.|....||++|... +.+-.||+.|.+||.-++-..+++||.|-+|||.++.++-|-+++++||+-
T Consensus 126 q~kEv~v~KsedalGlTITDN-------G~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel 197 (334)
T KOG3938|consen 126 QAKEVEVVKSEDALGLTITDN-------GAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKEL 197 (334)
T ss_pred cceeEEEEecccccceEEeeC-------CcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhc
Confidence 355799999989999999861 234569999999999999888999999999999999999999999999974
No 31
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.06 E-value=1.7e-05 Score=54.91 Aligned_cols=54 Identities=35% Similarity=0.460 Sum_probs=43.1
Q ss_pred CCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCEEEEe
Q psy10226 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA--GNVVTLL 99 (208)
Q Consensus 43 ~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~--~~~v~l~ 99 (208)
..+++|..|.++++|+++| |+.||+|++|||..+.++ .+...++... +..+.+.
T Consensus 23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~ 78 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLT 78 (90)
T ss_pred CCEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEE
Confidence 4589999999999999999 999999999999999864 4455555543 5555553
No 32
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.97 E-value=2.1e-05 Score=73.67 Aligned_cols=70 Identities=30% Similarity=0.348 Sum_probs=55.6
Q ss_pred CCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECC-----eecCCCCHHHHHHHHHh-CCCEEE
Q psy10226 24 GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNH-----VTVVDVPHSAAVEALKR-AGNVVT 97 (208)
Q Consensus 24 ~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng-----~~l~~~t~~~av~~l~~-~~~~v~ 97 (208)
..|+|+.+... +..++|..|.+||||++++.|++||+|++||+ .++.++..++++.+|+. .|..|+
T Consensus 243 ~~GIGa~l~~~--------~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~ 314 (667)
T PRK11186 243 LEGIGAVLQMD--------DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVR 314 (667)
T ss_pred eeEEEEEEEEe--------CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEE
Confidence 46788887651 23689999999999999833999999999994 46678889999999995 566788
Q ss_pred Eeee
Q psy10226 98 LLGE 101 (208)
Q Consensus 98 l~~~ 101 (208)
|.+.
T Consensus 315 LtV~ 318 (667)
T PRK11186 315 LEIL 318 (667)
T ss_pred EEEE
Confidence 8653
No 33
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.97 E-value=5.9e-05 Score=51.28 Aligned_cols=52 Identities=23% Similarity=0.403 Sum_probs=41.9
Q ss_pred CcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCEEEEe
Q psy10226 44 TSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKR--AGNVVTLL 99 (208)
Q Consensus 44 ~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~--~~~~v~l~ 99 (208)
.|++|..|.++++|+. | |+.||.|++|||..+.. +++...++.. .+..+.|.
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~ 61 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLK 61 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEE
Confidence 4789999999999986 8 99999999999999884 5667777764 35566664
No 34
>KOG0606|consensus
Probab=97.94 E-value=2.2e-05 Score=75.67 Aligned_cols=86 Identities=26% Similarity=0.334 Sum_probs=70.0
Q ss_pred CCCCcceE-EEEEEeCCCcccEEEeccCCCCCCCCCC-----cEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCH
Q psy10226 9 GDSEWEYE-EIRLERGGAGLGFSIAGGTDNPHIGDDT-----SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPH 82 (208)
Q Consensus 9 ~~~~~~~~-~v~l~k~~~~lGf~i~gg~~~~~~~~~~-----~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~ 82 (208)
+......+ .|.+.+.+.+|||++..-+-+ .|+. ...|..|.+|++|..+| |+.+|.|..|||+.+.++.|
T Consensus 620 s~~~~~~~ppI~i~~~~~~yGft~~airVy---~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H 695 (1205)
T KOG0606|consen 620 SAAMLSLRPPITIHFSGKKYGFTLRAIRVY---MGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVH 695 (1205)
T ss_pred chhhcCcCCceeeeccccccCceeeeEEEe---cCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhH
Confidence 33344444 488999999999998753331 1233 35689999999999999 99999999999999999999
Q ss_pred HHHHHHHHhCCCEEEE
Q psy10226 83 SAAVEALKRAGNVVTL 98 (208)
Q Consensus 83 ~~av~~l~~~~~~v~l 98 (208)
.+++++|-..++.+.+
T Consensus 696 ~ev~~Lll~~gn~v~~ 711 (1205)
T KOG0606|consen 696 TEVMELLLKSGNKVTL 711 (1205)
T ss_pred HHHHHHHHhcCCeeEE
Confidence 9999999999988777
No 35
>KOG1738|consensus
Probab=97.73 E-value=0.00011 Score=67.09 Aligned_cols=71 Identities=23% Similarity=0.269 Sum_probs=61.9
Q ss_pred eCCCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEEEEe
Q psy10226 22 RGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99 (208)
Q Consensus 22 k~~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v~l~ 99 (208)
+...|+|+.|..-- +..++|+.+.++++|++.+.|..||.|++||+..+.++.+.-+|..|+....-|.++
T Consensus 210 kp~eglg~~I~Ssy-------dg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~ 280 (638)
T KOG1738|consen 210 SPSEGLGLYIDSSY-------DGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELT 280 (638)
T ss_pred CcccCCceEEeeec-------CCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceee
Confidence 45788999998744 457799999999999999999999999999999999999999999999876666553
No 36
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.59 E-value=0.00015 Score=64.92 Aligned_cols=55 Identities=27% Similarity=0.401 Sum_probs=44.2
Q ss_pred CCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCEEEEee
Q psy10226 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKR--AGNVVTLLG 100 (208)
Q Consensus 43 ~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~--~~~~v~l~~ 100 (208)
..+++|..|.++|+|+++| |+.||+|++|||..+..+ .+...++.. .+..+.|..
T Consensus 256 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~--~~~~~~l~~~~~g~~v~l~v 312 (428)
T TIGR02037 256 QRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISSF--ADLRRAIGTLKPGKKVTLGI 312 (428)
T ss_pred CCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEE
Confidence 3689999999999999999 999999999999999864 445555543 466677643
No 37
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.55 E-value=0.00028 Score=59.11 Aligned_cols=54 Identities=20% Similarity=0.139 Sum_probs=43.2
Q ss_pred CCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCEEEEe
Q psy10226 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKR--AGNVVTLL 99 (208)
Q Consensus 43 ~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~--~~~~v~l~ 99 (208)
..|+.|..+.++++|++.| |+.||.|++|||.++.+. +++.+++.+ .+..+.|.
T Consensus 190 ~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~~~v~l~ 245 (259)
T TIGR01713 190 LEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDP--EQAFQALQMLREETNLTLT 245 (259)
T ss_pred eeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCeEEEE
Confidence 3589999999999999999 999999999999999964 445555554 33456654
No 38
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.47 E-value=0.00044 Score=61.87 Aligned_cols=53 Identities=38% Similarity=0.525 Sum_probs=44.7
Q ss_pred CcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCEEEEe
Q psy10226 44 TSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKR--AGNVVTLL 99 (208)
Q Consensus 44 ~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~--~~~~v~l~ 99 (208)
.+++|..|.++|+|+++| |++||+|++|||..+.+ .++..++|++ .+..+.|.
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~g~~v~l~ 416 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSS--VAELRKVLDRAKKGGRVALL 416 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEE
Confidence 589999999999999999 99999999999999985 5677777775 35566664
No 39
>PRK10139 serine endoprotease; Provisional
Probab=97.45 E-value=0.00045 Score=62.38 Aligned_cols=53 Identities=30% Similarity=0.381 Sum_probs=44.5
Q ss_pred CcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEEEEe
Q psy10226 44 TSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99 (208)
Q Consensus 44 ~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v~l~ 99 (208)
.+++|..|.++++|+++| |+.||+|++|||..+.. +++..+++++....+.|.
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~v~l~ 442 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQ 442 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEE
Confidence 478999999999999999 99999999999999975 577777777655555553
No 40
>PRK10942 serine endoprotease; Provisional
Probab=97.43 E-value=0.0005 Score=62.37 Aligned_cols=53 Identities=26% Similarity=0.342 Sum_probs=45.3
Q ss_pred CcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEEEEe
Q psy10226 44 TSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99 (208)
Q Consensus 44 ~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v~l~ 99 (208)
.+++|..|.++|+|+++| |++||+|++|||..+.+ .++..++++..+..+.|.
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s--~~dl~~~l~~~~~~v~l~ 460 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKN--IAELRKILDSKPSVLALN 460 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEE
Confidence 479999999999999999 99999999999999996 577777777765665553
No 41
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.39 E-value=0.0012 Score=59.47 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=43.3
Q ss_pred cEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHh-CCCEEEEee
Q psy10226 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKR-AGNVVTLLG 100 (208)
Q Consensus 45 ~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~-~~~~v~l~~ 100 (208)
+..|..|.++|+|+++| |++||+|++|||..+.. +++..+.++. .+..+.+..
T Consensus 222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s--~~dl~~~l~~~~~~~v~l~v 275 (449)
T PRK10779 222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQ--WQTFVTLVRDNPGKPLALEI 275 (449)
T ss_pred CcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCCEEEEEE
Confidence 47899999999999999 99999999999999974 5677777765 345666643
No 42
>PRK10139 serine endoprotease; Provisional
Probab=97.37 E-value=0.00043 Score=62.48 Aligned_cols=55 Identities=16% Similarity=0.346 Sum_probs=45.2
Q ss_pred CCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCEEEEee
Q psy10226 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKR--AGNVVTLLG 100 (208)
Q Consensus 43 ~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~--~~~~v~l~~ 100 (208)
..+++|..|.++|+|+++| |++||+|++|||..+.. +.+..+.|.. .+..+.|..
T Consensus 289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~V 345 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGL 345 (455)
T ss_pred CCceEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEE
Confidence 4589999999999999999 99999999999999986 4666666654 466676643
No 43
>PRK10898 serine endoprotease; Provisional
Probab=97.32 E-value=0.00055 Score=59.85 Aligned_cols=54 Identities=30% Similarity=0.546 Sum_probs=42.3
Q ss_pred CCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHH--hCCCEEEEe
Q psy10226 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK--RAGNVVTLL 99 (208)
Q Consensus 43 ~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~--~~~~~v~l~ 99 (208)
..+++|..|.++++|+++| |+.||+|++|||..+..+ .+..+.+. ..+..+.|.
T Consensus 278 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~l~ 333 (353)
T PRK10898 278 LQGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIPVV 333 (353)
T ss_pred CCeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEE
Confidence 3689999999999999999 999999999999998764 34444444 345556654
No 44
>PRK10942 serine endoprotease; Provisional
Probab=97.29 E-value=0.00063 Score=61.73 Aligned_cols=54 Identities=22% Similarity=0.429 Sum_probs=43.6
Q ss_pred CCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCEEEEe
Q psy10226 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKR--AGNVVTLL 99 (208)
Q Consensus 43 ~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~--~~~~v~l~ 99 (208)
..+++|..|.++++|+++| |+.||+|++|||..+..+ .+....+.. .+..+.|.
T Consensus 310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~ 365 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLG 365 (473)
T ss_pred CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEE
Confidence 4589999999999999999 999999999999999864 555555553 35566664
No 45
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.26 E-value=0.00092 Score=59.77 Aligned_cols=53 Identities=21% Similarity=0.343 Sum_probs=44.0
Q ss_pred CcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhC-CCEEEEe
Q psy10226 44 TSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA-GNVVTLL 99 (208)
Q Consensus 44 ~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~-~~~v~l~ 99 (208)
.++.|..|.++++|+++| |++||+|++|||..+.+ .++..+.++.. +..+.+.
T Consensus 203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s--~~dl~~~l~~~~~~~v~l~ 256 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRS--WTDFVSAVKENPGKSMDIK 256 (420)
T ss_pred cCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCceEEE
Confidence 468999999999999999 99999999999999975 57777777763 4455554
No 46
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.22 E-value=0.00066 Score=59.29 Aligned_cols=54 Identities=28% Similarity=0.398 Sum_probs=43.8
Q ss_pred CcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCEEEEee
Q psy10226 44 TSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKR--AGNVVTLLG 100 (208)
Q Consensus 44 ~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~--~~~~v~l~~ 100 (208)
.+++|..|.++++|+++| |+.||.|++|||..+.. +.+..+.+.+ .+..+.|..
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~dl~~~l~~~~~g~~v~l~v 333 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIG--AEELMDRIAETRPGSKVMVTV 333 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEE
Confidence 589999999999999999 99999999999999986 4555565653 466666643
No 47
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.21 E-value=0.00047 Score=62.15 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=40.8
Q ss_pred EEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEEEEee
Q psy10226 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLG 100 (208)
Q Consensus 46 i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v~l~~ 100 (208)
.+|..|.++|||+++| |+.||+|++|||+.+.+...-...-..+..+..+.+..
T Consensus 128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v 181 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITV 181 (449)
T ss_pred ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEE
Confidence 4789999999999999 99999999999999998744333323333455566643
No 48
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.05 E-value=0.0034 Score=47.59 Aligned_cols=80 Identities=18% Similarity=0.190 Sum_probs=47.9
Q ss_pred ceEEEEEEe--C---CCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCC-CCEEEEECCeecCCCCHHHHHH
Q psy10226 14 EYEEIRLER--G---GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQV-NDVIHQVNHVTVVDVPHSAAVE 87 (208)
Q Consensus 14 ~~~~v~l~k--~---~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~-gD~Il~Vng~~l~~~t~~~av~ 87 (208)
.+|+|.+.- . .+-||++|+-..-. .....++-|..|.++|||+.+| |.+ .|.|+.+++..+.+. ++..+
T Consensus 10 ~~R~v~i~ps~~w~~~g~LG~sv~~~~~~--~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~--~~l~~ 84 (138)
T PF04495_consen 10 TTREVSIVPSKKWGGQGLLGISVRFESFE--GAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDE--DDLFE 84 (138)
T ss_dssp SEEEEEE---SSSSSSSSS-EEEEEEE-T--TGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--ST--CHHHH
T ss_pred eEEEEEEccCcccCCCCCCcEEEEEeccc--ccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCH--HHHHH
Confidence 345555533 1 34489999864332 1125688899999999999999 998 699999999888854 45555
Q ss_pred HHHhC-CCEEEE
Q psy10226 88 ALKRA-GNVVTL 98 (208)
Q Consensus 88 ~l~~~-~~~v~l 98 (208)
++.+. +..+.|
T Consensus 85 ~v~~~~~~~l~L 96 (138)
T PF04495_consen 85 LVEANENKPLQL 96 (138)
T ss_dssp HHHHTTTS-EEE
T ss_pred HHHHcCCCcEEE
Confidence 55543 335555
No 49
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.60 E-value=0.014 Score=51.65 Aligned_cols=65 Identities=18% Similarity=0.350 Sum_probs=46.4
Q ss_pred CCcccEEEeccCCCCCCCCCCcEEEEEEC--------CCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhC-CC
Q psy10226 24 GAGLGFSIAGGTDNPHIGDDTSIYITKLI--------PGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA-GN 94 (208)
Q Consensus 24 ~~~lGf~i~gg~~~~~~~~~~~i~I~~v~--------~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~-~~ 94 (208)
+..+|+.+.. .|++|.... .++||+.+| |+.||.|++|||..+.. ++++.+++++. +.
T Consensus 95 G~~iGI~l~t----------~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s--~~DL~~iL~~~~g~ 161 (402)
T TIGR02860 95 GQSIGVKLNT----------KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKN--MDDLANLINKAGGE 161 (402)
T ss_pred CEEEEEEEec----------CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCC
Confidence 4456666654 356664432 358999999 99999999999999985 57777888765 45
Q ss_pred EEEEeee
Q psy10226 95 VVTLLGE 101 (208)
Q Consensus 95 ~v~l~~~ 101 (208)
.+.|...
T Consensus 162 ~V~LtV~ 168 (402)
T TIGR02860 162 KLTLTIE 168 (402)
T ss_pred eEEEEEE
Confidence 6666443
No 50
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=96.45 E-value=0.0016 Score=58.06 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=32.8
Q ss_pred EEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHH
Q psy10226 48 ITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEAL 89 (208)
Q Consensus 48 I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l 89 (208)
|..|.+||+|+++| |++||+|++|||+.+.++ .+....+
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw--~D~~~~l 40 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRDL--IDYQFLC 40 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHh
Confidence 56789999999999 999999999999999754 4554444
No 51
>KOG4407|consensus
Probab=96.43 E-value=0.0047 Score=60.88 Aligned_cols=134 Identities=12% Similarity=0.094 Sum_probs=97.5
Q ss_pred CcceE-EEEEEeCCCcccEEEeccCCCCCCCC--------------------CCcEEEEEECCCCcccccCCCCCCCEEE
Q psy10226 12 EWEYE-EIRLERGGAGLGFSIAGGTDNPHIGD--------------------DTSIYITKLIPGGAAASDGRLQVNDVIH 70 (208)
Q Consensus 12 ~~~~~-~v~l~k~~~~lGf~i~gg~~~~~~~~--------------------~~~i~I~~v~~gg~A~~~G~L~~gD~Il 70 (208)
.|..+ .|.+.|.+.||||+++....+|.... .--+++.++..++++..+| +..+|.|+
T Consensus 43 S~~~~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v~ 121 (1973)
T KOG4407|consen 43 SIQPKLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGVA 121 (1973)
T ss_pred cCCCceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-ccccccee
Confidence 46666 45555569999999975544332110 1135788899999999999 99999999
Q ss_pred EECCeecCCCCHHHHHHH---------------------HHhCCCEEEEeeeeeCCCCCHHHHHHHHHhcCCeEEEEEcc
Q psy10226 71 QVNHVTVVDVPHSAAVEA---------------------LKRAGNVVTLLGEKNLENVTHEEAVATLKATHERVNLLIGK 129 (208)
Q Consensus 71 ~Vng~~l~~~t~~~av~~---------------------l~~~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~v~~ 129 (208)
.|||..+.+.+.. ..-. .-+.++.|.+++....-++...+++..++...-.+++-+..
T Consensus 122 ~itG~e~~~~TS~-~~~~vk~~eT~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P 200 (1973)
T KOG4407|consen 122 GITGLEPTSPTSL-PPYQVKAMETIFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVP 200 (1973)
T ss_pred eecccccCCCccc-cHHHHhhhhhhhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCCCCCCceecc
Confidence 9999998877632 1111 12457778888988999999999999999998888888888
Q ss_pred CCccccccccccCCCCCC
Q psy10226 130 FEPALRNSTNHLAHPSDI 147 (208)
Q Consensus 130 ~~~~~~~~~~~~~~~s~~ 147 (208)
.+......+|.....+|.
T Consensus 201 ~~~dv~q~~~t~i~~tP~ 218 (1973)
T KOG4407|consen 201 KECDVLQMHYTSIAHTPE 218 (1973)
T ss_pred ccCchHhhhccccccCCC
Confidence 777665666655555543
No 52
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=96.26 E-value=0.006 Score=54.56 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=36.7
Q ss_pred CcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy10226 44 TSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90 (208)
Q Consensus 44 ~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~ 90 (208)
.+.+|..|.++|||+++| |++||.|++|||..+.+. .+..+.+.
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~--~dl~~~ia 171 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGF--KDVRQQIA 171 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHH
Confidence 467899999999999999 999999999999999875 44443333
No 53
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.09 E-value=0.0056 Score=55.38 Aligned_cols=42 Identities=31% Similarity=0.419 Sum_probs=35.8
Q ss_pred CcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCe
Q psy10226 25 AGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHV 75 (208)
Q Consensus 25 ~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~ 75 (208)
..||+.+..- .....|..|.+||||..+| |.+||.|+.|||.
T Consensus 451 ~~LGl~v~~~--------~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 451 YYLGLKVKSE--------GGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred cccceEeccc--------CCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 3577776651 3467899999999999999 9999999999998
No 54
>KOG1320|consensus
Probab=95.88 E-value=0.03 Score=50.51 Aligned_cols=54 Identities=20% Similarity=0.383 Sum_probs=44.6
Q ss_pred CCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCC--CEEEEe
Q psy10226 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAG--NVVTLL 99 (208)
Q Consensus 43 ~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~--~~v~l~ 99 (208)
.++++|.+|.+++++...+ +..||+|+.|||+.+.++ .+...+|+.|. +.|.++
T Consensus 397 ~q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~~~~v~vl 452 (473)
T KOG1320|consen 397 VQLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL--KHLYELIEECSTEDKVAVL 452 (473)
T ss_pred eeEEEEEEeccCCCccccc-ccCCCEEEEECCEEeech--HHHHHHHHhcCcCceEEEE
Confidence 4578999999999999999 999999999999999987 45566777665 366554
No 55
>KOG4371|consensus
Probab=95.58 E-value=0.025 Score=54.89 Aligned_cols=80 Identities=26% Similarity=0.376 Sum_probs=62.0
Q ss_pred ceEEEEEEeCCCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCC
Q psy10226 14 EYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAG 93 (208)
Q Consensus 14 ~~~~v~l~k~~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~ 93 (208)
+.+.+++.|..+.||..+..-.. .+.|+...-.+...+-. |++||.|+.+||+.+++..|++|+.+++..+
T Consensus 1147 ~~i~~~~~r~~~~l~~~~a~~~~--------~~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~ 1217 (1332)
T KOG4371|consen 1147 RVIDVELDRNEGSLGVQIASLSG--------RVCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGG 1217 (1332)
T ss_pred ccccccCCCCCCCCCceeccCcc--------ceehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccC
Confidence 34466777766779998886322 34566666556555555 9999999999999999999999999999999
Q ss_pred CEEEEeeee
Q psy10226 94 NVVTLLGEK 102 (208)
Q Consensus 94 ~~v~l~~~~ 102 (208)
+.|.|-+.|
T Consensus 1218 ~~~~~~~~r 1226 (1332)
T KOG4371|consen 1218 DRVVLGVQR 1226 (1332)
T ss_pred ceEEEEeec
Confidence 999884444
No 56
>KOG3129|consensus
Probab=95.46 E-value=0.027 Score=45.35 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=31.8
Q ss_pred CCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCC
Q psy10226 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVP 81 (208)
Q Consensus 43 ~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t 81 (208)
...++|..|.++|||+.+| |+.||.|+++..+.--+..
T Consensus 138 ~~Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~ 175 (231)
T KOG3129|consen 138 RPFAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFL 175 (231)
T ss_pred cceEEEeecCCCChhhhhC-cccCceEEEecccccccch
Confidence 3467899999999999999 9999999998776555543
No 57
>KOG3532|consensus
Probab=95.41 E-value=0.051 Score=50.77 Aligned_cols=73 Identities=16% Similarity=0.308 Sum_probs=56.5
Q ss_pred CCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEEEEeeeee
Q psy10226 24 GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKN 103 (208)
Q Consensus 24 ~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v~l~~~~~ 103 (208)
...+|+..... +.+.+.|..|.++++|+++. +++||.+++|||+++. +-.++.+.++.....+.....++
T Consensus 385 s~~ig~vf~~~-------~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~~ 454 (1051)
T KOG3532|consen 385 SSPIGLVFDKN-------TNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVERS 454 (1051)
T ss_pred cCceeEEEecC-------CceEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEeec
Confidence 34466655542 25678999999999999998 9999999999999987 46889999998777776654454
Q ss_pred CCC
Q psy10226 104 LEN 106 (208)
Q Consensus 104 ~~~ 106 (208)
+..
T Consensus 455 ~~~ 457 (1051)
T KOG3532|consen 455 LDD 457 (1051)
T ss_pred ccc
Confidence 443
No 58
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.037 Score=48.04 Aligned_cols=56 Identities=29% Similarity=0.445 Sum_probs=41.8
Q ss_pred CCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEEEEe
Q psy10226 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99 (208)
Q Consensus 43 ~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v~l~ 99 (208)
..|++|..+.+++||+++| ++.||.|+++||..+.+.......-.....+..+.+.
T Consensus 269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~ 324 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALK 324 (347)
T ss_pred CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEE
Confidence 4468999999999999999 9999999999999999754332222222345555553
No 59
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=95.31 E-value=0.093 Score=36.66 Aligned_cols=55 Identities=25% Similarity=0.340 Sum_probs=33.0
Q ss_pred CcEEEEEECCC--------CcccccC-CCCCCCEEEEECCeecCCCCHHHHHHHHH-hCCCEEEEee
Q psy10226 44 TSIYITKLIPG--------GAAASDG-RLQVNDVIHQVNHVTVVDVPHSAAVEALK-RAGNVVTLLG 100 (208)
Q Consensus 44 ~~i~I~~v~~g--------g~A~~~G-~L~~gD~Il~Vng~~l~~~t~~~av~~l~-~~~~~v~l~~ 100 (208)
.++.|..|.+| ||-...| .+++||.|++|||+.+.... ....+|. +++..|.|.+
T Consensus 12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~--~~~~lL~~~agk~V~Ltv 76 (88)
T PF14685_consen 12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADA--NPYRLLEGKAGKQVLLTV 76 (88)
T ss_dssp TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB---HHHHHHTTTTSEEEEEE
T ss_pred CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCC--CHHHHhcccCCCEEEEEE
Confidence 46778888887 5555555 25599999999999998642 3444555 5666777743
No 60
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=94.06 E-value=0.19 Score=42.45 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=23.4
Q ss_pred cccCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy10226 58 ASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90 (208)
Q Consensus 58 ~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~ 90 (208)
.+.| |+.||.+++|||.++.+.. ++.++++
T Consensus 221 ~~~G-Lq~GDva~sING~dL~D~~--qa~~l~~ 250 (276)
T PRK09681 221 DASG-FKEGDIAIALNQQDFTDPR--AMIALMR 250 (276)
T ss_pred HHcC-CCCCCEEEEeCCeeCCCHH--HHHHHHH
Confidence 4578 9999999999999999754 4444444
No 61
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=93.65 E-value=0.16 Score=43.52 Aligned_cols=55 Identities=20% Similarity=0.375 Sum_probs=44.9
Q ss_pred CcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCEEEEeeee
Q psy10226 44 TSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKR--AGNVVTLLGEK 102 (208)
Q Consensus 44 ~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~--~~~~v~l~~~~ 102 (208)
.|+|+..+..++++ .|.|+.||.|++|||..+.. .++....++. .|+.|++...|
T Consensus 130 ~gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k~Gd~VtI~~~r 186 (342)
T COG3480 130 AGVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFTS--SDELIDYVSSKKPGDEVTIDYER 186 (342)
T ss_pred eeEEEEEccCCcch--hceeccCCeEEeeCCeecCC--HHHHHHHHhccCCCCeEEEEEEe
Confidence 37899999999999 57799999999999999985 4677777764 57788886543
No 62
>KOG3549|consensus
Probab=90.20 E-value=1.7 Score=37.80 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHh--CCCEEEEeeeeeCCCCCHHHHHHHHHhcCCeEEEEEccC
Q psy10226 78 VDVPHSAAVEALKR--AGNVVTLLGEKNLENVTHEEAVATLKATHERVNLLIGKF 130 (208)
Q Consensus 78 ~~~t~~~av~~l~~--~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 130 (208)
..+..++++.+-.. -|+.+--+||..++..+|+|++++|+++++.++|+|.--
T Consensus 85 SkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeVtlTV~~l 139 (505)
T KOG3549|consen 85 SKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEVTLTVKHL 139 (505)
T ss_pred ehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEEEEEeHhh
Confidence 44555666665443 356666699999999999999999999999999998743
No 63
>KOG1421|consensus
Probab=89.70 E-value=0.76 Score=43.35 Aligned_cols=53 Identities=23% Similarity=0.393 Sum_probs=40.6
Q ss_pred CCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHh-CCCEEEEe
Q psy10226 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKR-AGNVVTLL 99 (208)
Q Consensus 43 ~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~-~~~~v~l~ 99 (208)
.+-+.|..|.++|+|+.. |++||.++.||+..+.++ .++.++|-+ .|..+.|+
T Consensus 302 tgmLvV~~vL~~gpa~k~--Le~GDillavN~t~l~df--~~l~~iLDegvgk~l~Lt 355 (955)
T KOG1421|consen 302 TGMLVVETVLPEGPAEKK--LEPGDILLAVNSTCLNDF--EALEQILDEGVGKNLELT 355 (955)
T ss_pred ceeEEEEEeccCCchhhc--cCCCcEEEEEcceehHHH--HHHHHHHhhccCceEEEE
Confidence 345678999999999885 999999999999888764 555566654 45666663
No 64
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=89.31 E-value=1.7 Score=35.90 Aligned_cols=53 Identities=23% Similarity=0.338 Sum_probs=34.9
Q ss_pred EEEEeCCCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy10226 18 IRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90 (208)
Q Consensus 18 v~l~k~~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~ 90 (208)
.-+.|+..-+|+.+..|++ ++.-+..| |+.||..+++|+.++.+- +++.++|+
T Consensus 198 tpv~r~eki~Gyr~~pgkd-----------------~slF~~sg-lq~GDIavaiNnldltdp--~~m~~llq 250 (275)
T COG3031 198 TPVIRNEKIEGYRFEPGKD-----------------GSLFYKSG-LQRGDIAVAINNLDLTDP--EDMFRLLQ 250 (275)
T ss_pred eeEeeCCceEEEEecCCCC-----------------cchhhhhc-CCCcceEEEecCcccCCH--HHHHHHHH
Confidence 3344555667877776554 34456678 999999999999777642 34444444
No 65
>KOG4407|consensus
Probab=87.89 E-value=0.19 Score=50.26 Aligned_cols=54 Identities=28% Similarity=0.406 Sum_probs=49.9
Q ss_pred cEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEEEEe
Q psy10226 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99 (208)
Q Consensus 45 ~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v~l~ 99 (208)
-+||..|.++++|+.+. |+.||+++.||...+.++...+++.++++....+.++
T Consensus 144 T~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~ 197 (1973)
T KOG4407|consen 144 TIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLH 197 (1973)
T ss_pred hhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCCCCCCce
Confidence 46899999999999998 9999999999999999999999999999988877663
No 66
>PF06663 DUF1170: Protein of unknown function (DUF1170); InterPro: IPR010599 This region of unknown function is situated between the IPR001478 from INTERPRO and IPR001849 from INTERPRO domains in a cytoplasmic and membrane associated protein which appears to function as an adapter protein or regulator of Ras signalling pathways [].; GO: 0009966 regulation of signal transduction, 0005737 cytoplasm, 0016020 membrane
Probab=87.40 E-value=0.72 Score=36.50 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=22.8
Q ss_pred CCCCCCCCCCCcccccCCc--eeeccCCC
Q psy10226 182 HPMPPLPHPENGIVKENGN--VTCTDSGQ 208 (208)
Q Consensus 182 ~~~pp~~~p~~~~~~~~~~--~~~~~~~~ 208 (208)
.+.+..++.||++||++++ ||++|+||
T Consensus 46 ~~~~kGSESPNSfLDqE~rrrfti~e~d~ 74 (189)
T PF06663_consen 46 LPGSKGSESPNSFLDQESRRRFTIAESDQ 74 (189)
T ss_pred CCCCCCCCCCccccchhhccccccccccc
Confidence 3456777899999999998 99999886
No 67
>PF12812 PDZ_1: PDZ-like domain
Probab=86.25 E-value=2.4 Score=28.80 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=34.9
Q ss_pred cEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhC
Q psy10226 45 SIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA 92 (208)
Q Consensus 45 ~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~ 92 (208)
+.++.....|+++...| +..|-.|.+||++.+.++ ++.++.+++.
T Consensus 31 ~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~L--d~f~~vvk~i 75 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPDL--DDFIKVVKKI 75 (78)
T ss_pred CEEEEEecCCChhhhCC-CCCCeEEEeECCcCCcCH--HHHHHHHHhC
Confidence 35666678888888777 999999999999998864 5666666654
No 68
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=86.14 E-value=1.9 Score=28.76 Aligned_cols=38 Identities=21% Similarity=0.447 Sum_probs=34.4
Q ss_pred hCCCEEEEeeeeeCCCCCHHHHHHHHHhcCCeEEEEEc
Q psy10226 91 RAGNVVTLLGEKNLENVTHEEAVATLKATHERVNLLIG 128 (208)
Q Consensus 91 ~~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~v~ 128 (208)
+.|+.+.-+|++.+.++++.++..+++.+...++|.+.
T Consensus 44 ~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V~ 81 (81)
T PF00595_consen 44 KVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTVQ 81 (81)
T ss_dssp STTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEEE
T ss_pred chhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEEC
Confidence 56888888999999999999999999999999888873
No 69
>KOG4371|consensus
Probab=85.78 E-value=1.3 Score=43.68 Aligned_cols=68 Identities=29% Similarity=0.392 Sum_probs=55.1
Q ss_pred EEEEEe-CCCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy10226 17 EIRLER-GGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90 (208)
Q Consensus 17 ~v~l~k-~~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~ 90 (208)
.+.|.+ .-.++|+.+....- ..++||..+...+.|...|++++||++...+|.++.+.+-.+..+.++
T Consensus 1248 ~~~~~~~p~~~~~~~~~~~~~------s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~ 1316 (1332)
T KOG4371|consen 1248 SVMLLKKPMATLGLSLAKRTM------SDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLK 1316 (1332)
T ss_pred hheeeecccccccccccccCc------CCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhh
Confidence 344444 36778888876332 568999999999999999999999999999999999988776666555
No 70
>KOG0792|consensus
Probab=85.28 E-value=0.65 Score=45.60 Aligned_cols=70 Identities=20% Similarity=0.379 Sum_probs=55.0
Q ss_pred CcccEEEeccCCCCCCCCCCcEEEEEEC-------------CCCcccc-cCCCCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy10226 25 AGLGFSIAGGTDNPHIGDDTSIYITKLI-------------PGGAAAS-DGRLQVNDVIHQVNHVTVVDVPHSAAVEALK 90 (208)
Q Consensus 25 ~~lGf~i~gg~~~~~~~~~~~i~I~~v~-------------~gg~A~~-~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~ 90 (208)
+-|||.+.|+.+...-.-..+..+.++. |++.|+. .-++..||+++.+||.++....|++++.+|+
T Consensus 716 g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~ir 795 (1144)
T KOG0792|consen 716 GRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLIR 795 (1144)
T ss_pred ccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHHh
Confidence 3499999998875322223566777787 8877754 4567889999999999999999999999999
Q ss_pred hCCC
Q psy10226 91 RAGN 94 (208)
Q Consensus 91 ~~~~ 94 (208)
....
T Consensus 796 s~r~ 799 (1144)
T KOG0792|consen 796 SPRE 799 (1144)
T ss_pred hhhh
Confidence 7644
No 71
>KOG3550|consensus
Probab=80.90 E-value=3 Score=32.08 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=33.7
Q ss_pred CCCEEEEeeeeeCCCCCHHHHHHHHHhcCCeEEEEEcc
Q psy10226 92 AGNVVTLLGEKNLENVTHEEAVATLKATHERVNLLIGK 129 (208)
Q Consensus 92 ~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~v~~ 129 (208)
.|+++.-+||.++++..|+.++.+||.+.+.+.|.+.-
T Consensus 136 rgdqllsvngvsvege~hekavellkaa~gsvklvvry 173 (207)
T KOG3550|consen 136 RGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLVVRY 173 (207)
T ss_pred ccceeEeecceeecchhhHHHHHHHHHhcCcEEEEEec
Confidence 36777779999999999999999999999999988753
No 72
>KOG3834|consensus
Probab=78.83 E-value=3.8 Score=36.64 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=41.8
Q ss_pred CCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEEEE
Q psy10226 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98 (208)
Q Consensus 43 ~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v~l 98 (208)
..+.-|.+|..+++|+++|-.---|.|++|||..|.+- .+....+|++....|+|
T Consensus 14 teg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~d-nd~Lk~llk~~sekVkl 68 (462)
T KOG3834|consen 14 TEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKD-NDTLKALLKANSEKVKL 68 (462)
T ss_pred ceeEEEEEeecCChHHhcCcchhhhhhheeCcccccCc-hHHHHHHHHhcccceEE
Confidence 44667888999999999994444799999999988854 45556667765555666
No 73
>KOG1945|consensus
Probab=77.85 E-value=0.82 Score=39.69 Aligned_cols=83 Identities=33% Similarity=0.508 Sum_probs=66.1
Q ss_pred EEEEEeCCCcccEEEec-cCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCE
Q psy10226 17 EIRLERGGAGLGFSIAG-GTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNV 95 (208)
Q Consensus 17 ~v~l~k~~~~lGf~i~g-g~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~ 95 (208)
.+.+.++..++||++.| +.+...+-...++++.+..+|+.-+|.|+..+-|.+..+.+..+..++...+++..+.+...
T Consensus 102 e~av~~~~~g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~~~~r~g~~sved~~~s~~~k~lp~vp~s~~~es~g~S~~~ 181 (377)
T KOG1945|consen 102 EVAVEKGAEGLGVSIIGMGVGKKSGLEELGIFVKSATSGGAVHRDGRWSVEDVEVSVDSKSLPGVPFSWFAESLGGSSSR 181 (377)
T ss_pred hhhccCCcCCCCccccccccchhccchhhcceeecccccccccccccccccccccccccCCCCCcchhhhhcccccchhc
Confidence 46677777788888776 22222333466899999999999999999999999999999999999988888888877666
Q ss_pred EEEe
Q psy10226 96 VTLL 99 (208)
Q Consensus 96 v~l~ 99 (208)
+.+.
T Consensus 182 ~n~~ 185 (377)
T KOG1945|consen 182 VNFT 185 (377)
T ss_pred cCCc
Confidence 6553
No 74
>KOG3834|consensus
Probab=75.60 E-value=4.6 Score=36.12 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=43.0
Q ss_pred ccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCC-CCCEEEEE-CCeecCCCCHHHHHHHHHh-CCCEEEE
Q psy10226 27 LGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQ-VNDVIHQV-NHVTVVDVPHSAAVEALKR-AGNVVTL 98 (208)
Q Consensus 27 lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~-~gD~Il~V-ng~~l~~~t~~~av~~l~~-~~~~v~l 98 (208)
||++|+-.... .....-+-|-.|.++++|+++| |+ .+|.|+-+ +.+ ....++...+|.. -+..++|
T Consensus 94 lGvsvrFcsf~--~A~~~vwHvl~V~p~SPaalAg-l~~~~DYivG~~~~~---~~~~eDl~~lIeshe~kpLkl 162 (462)
T KOG3834|consen 94 LGVSVRFCSFD--GAVESVWHVLSVEPNSPAALAG-LRPYTDYIVGIWDAV---MHEEEDLFTLIESHEGKPLKL 162 (462)
T ss_pred cceEEEeccCc--cchhheeeeeecCCCCHHHhcc-cccccceEecchhhh---ccchHHHHHHHHhccCCCcce
Confidence 88888754432 1124456799999999999999 77 78999877 542 2223455555553 3445555
No 75
>KOG2921|consensus
Probab=73.27 E-value=6.2 Score=35.05 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=39.4
Q ss_pred CCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHh
Q psy10226 40 IGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKR 91 (208)
Q Consensus 40 ~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~ 91 (208)
+....++.|..|...||+.--..|.+||.|.++||..+... +++.+.++.
T Consensus 216 ya~g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v--~dW~ecl~t 265 (484)
T KOG2921|consen 216 YAHGEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKV--SDWLECLAT 265 (484)
T ss_pred hhcCceEEEEeccccCCCcCcccCCccceEEecCCcccCCH--HHHHHHHHh
Confidence 33466888999999888865545999999999999999864 566666665
No 76
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=69.10 E-value=5.3 Score=34.76 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=29.6
Q ss_pred EEEEECCCCcccccCCCCCCCEEEEECCeecCCC
Q psy10226 47 YITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDV 80 (208)
Q Consensus 47 ~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~ 80 (208)
++..+..+++|..+| ++.||+++++|+..+..+
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~ 164 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVASW 164 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEccCH
Confidence 444799999999999 999999999999999865
No 77
>KOG3551|consensus
Probab=67.58 E-value=23 Score=31.55 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=32.5
Q ss_pred CCEEEEeeeeeCCCCCHHHHHHHHHhcCCeEEEEEccC
Q psy10226 93 GNVVTLLGEKNLENVTHEEAVATLKATHERVNLLIGKF 130 (208)
Q Consensus 93 ~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 130 (208)
++.+--+||..+...+|+|+++.||.++..|.+.|.--
T Consensus 132 gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~levKy~ 169 (506)
T KOG3551|consen 132 GDAILSVNGEDLRDATHDEAVQALKRAGKEVLLEVKYM 169 (506)
T ss_pred ccEEEEecchhhhhcchHHHHHHHHhhCceeeeeeeee
Confidence 44555599999999999999999999999998887644
No 78
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=64.67 E-value=26 Score=27.84 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=31.6
Q ss_pred ccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEEC
Q psy10226 27 LGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVN 73 (208)
Q Consensus 27 lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vn 73 (208)
.|+.+.. .+..+.|..|..||+|++.| +..+++|.+|-
T Consensus 113 ~GL~l~~--------e~~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v~ 150 (183)
T PF11874_consen 113 AGLTLME--------EGGKVIVDEVEFGSPAEKAG-IDFDWEITEVE 150 (183)
T ss_pred CCCEEEe--------eCCEEEEEecCCCCHHHHcC-CCCCcEEEEEE
Confidence 5777765 14478999999999999999 99999888873
No 79
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=54.40 E-value=22 Score=28.24 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=34.1
Q ss_pred cCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEEE
Q psy10226 60 DGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVT 97 (208)
Q Consensus 60 ~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v~ 97 (208)
.|.+..||+++-|+++--.+-|-..++++++++|..|.
T Consensus 116 ~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~ 153 (187)
T PRK13810 116 VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIK 153 (187)
T ss_pred EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEE
Confidence 45588999999999999999999999999999988653
No 80
>KOG1703|consensus
Probab=52.99 E-value=7.1 Score=35.62 Aligned_cols=70 Identities=27% Similarity=0.443 Sum_probs=59.5
Q ss_pred cccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEEEEeeee
Q psy10226 26 GLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEK 102 (208)
Q Consensus 26 ~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v~l~~~~ 102 (208)
.|||.+.++ +. ...+-|..+.+++.+.... +..+|.+..+++..-..+.|.++...++..+....+...+
T Consensus 9 ~~~~r~~~~-~~-----~~~l~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 78 (479)
T KOG1703|consen 9 PWGFRLQGG-DF-----LQPLRILRVTPGGKAADAE-LDPGDIIAAIDGENEETMTHLEAQNKIKGSGSQLALTLSR 78 (479)
T ss_pred Cceeeeccc-cc-----ccccceeccCCCCcccccc-ccccccccccccccccccccccccCccccccccccccccc
Confidence 688886664 32 4568899999999999998 9999999999999999999999999998888887775544
No 81
>KOG1421|consensus
Probab=47.07 E-value=29 Score=33.27 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=40.7
Q ss_pred CCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCC
Q psy10226 43 DTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGN 94 (208)
Q Consensus 43 ~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~ 94 (208)
-.++|+...-.|+||.+ + |+....|..|||+.... .++-+.+|+...+
T Consensus 861 p~gvyvt~rg~gspalq-~-l~aa~fitavng~~t~~--lddf~~~~~~ipd 908 (955)
T KOG1421|consen 861 PEGVYVTSRGYGSPALQ-M-LRAAHFITAVNGHDTNT--LDDFYHMLLEIPD 908 (955)
T ss_pred CCceEEeecccCChhHh-h-cchheeEEEecccccCc--HHHHHHHHhhCCC
Confidence 35899999999999998 6 99999999999988774 5777888886544
No 82
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=44.93 E-value=40 Score=27.18 Aligned_cols=41 Identities=27% Similarity=0.248 Sum_probs=35.6
Q ss_pred ccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEEE
Q psy10226 57 AASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVT 97 (208)
Q Consensus 57 A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v~ 97 (208)
.-..|....|++++-|+++-..+.+-.++++.|++.|..|.
T Consensus 103 ~~ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~ 143 (201)
T COG0461 103 GLIEGGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVV 143 (201)
T ss_pred ceeEecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEE
Confidence 44455577899999999999999999999999999998763
No 83
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=44.57 E-value=77 Score=19.78 Aligned_cols=37 Identities=30% Similarity=0.501 Sum_probs=31.1
Q ss_pred hCCCEEEEeeeeeCCCCCHHHHHHHHHhcC-CeEEEEE
Q psy10226 91 RAGNVVTLLGEKNLENVTHEEAVATLKATH-ERVNLLI 127 (208)
Q Consensus 91 ~~~~~v~l~~~~~~~~~~~~~~~~~l~~~~-~~~~l~v 127 (208)
+.++.+.-+++..+...++++..++++... ..+.|.+
T Consensus 32 ~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 32 QAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 568888889999999999999999998865 6677655
No 84
>KOG1712|consensus
Probab=44.41 E-value=1.2e+02 Score=23.72 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=36.2
Q ss_pred CcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEE
Q psy10226 55 GAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVV 96 (208)
Q Consensus 55 g~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v 96 (208)
...-+.|.+.+|++++-|++.--.+=|..-|.+++.+.|..|
T Consensus 111 ~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~v 152 (183)
T KOG1712|consen 111 RFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEV 152 (183)
T ss_pred ceeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccEE
Confidence 344456779999999999999999999999999999988865
No 85
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=43.88 E-value=35 Score=27.12 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=32.5
Q ss_pred CCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEEE
Q psy10226 63 LQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVT 97 (208)
Q Consensus 63 L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v~ 97 (208)
+..||+++-|+++--.+-|...++++++++|..+.
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vv 148 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIA 148 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEE
Confidence 77999999999999999999999999999998753
No 86
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=42.85 E-value=46 Score=24.81 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=48.0
Q ss_pred EEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEEEE--------eeeeeCCCCCHHHHHHHHH
Q psy10226 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL--------LGEKNLENVTHEEAVATLK 117 (208)
Q Consensus 46 i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v~l--------~~~~~~~~~~~~~~~~~l~ 117 (208)
.-+..|-.|.++...- -+.|++|+.++| ++..-|...|..+|-.+.+ +-.+.......+++...+.
T Consensus 48 ~C~agvg~gv~~l~~~-arsgrrIlalDG-----Cp~~Catk~l~~AGv~~D~~l~itdlGikK~~~~D~~~edv~kv~~ 121 (135)
T COG4273 48 SCTAGVGAGVPALVDA-ARSGRRILALDG-----CPLRCATKCLAEAGVQADVHLTITDLGIKKTYPSDCKDEDVEKVAR 121 (135)
T ss_pred eeeecccCCcHHHHHH-hhcCCceEEecC-----ChHHHHHHHHHHhccceeEEEEehhcccccCCCCCCCHHHHHHHHH
Confidence 3466677777877765 788999999988 5566777888888776655 2233445566677666665
Q ss_pred hcCCe
Q psy10226 118 ATHER 122 (208)
Q Consensus 118 ~~~~~ 122 (208)
.-.+.
T Consensus 122 ~i~e~ 126 (135)
T COG4273 122 TIKEA 126 (135)
T ss_pred HHHHH
Confidence 44333
No 87
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=42.23 E-value=36 Score=27.00 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=33.0
Q ss_pred CCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEEE
Q psy10226 62 RLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVT 97 (208)
Q Consensus 62 ~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v~ 97 (208)
.+..||+++-|+++--.+-|...++++++++|..+.
T Consensus 113 ~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vv 148 (189)
T PRK09219 113 FLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVA 148 (189)
T ss_pred hCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEE
Confidence 388999999999999999999999999999998753
No 88
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=41.10 E-value=96 Score=19.89 Aligned_cols=41 Identities=29% Similarity=0.376 Sum_probs=33.8
Q ss_pred HhCCCEEEEeeeeeCCCCCHHHHHHHHHhcCCeEEEEEccC
Q psy10226 90 KRAGNVVTLLGEKNLENVTHEEAVATLKATHERVNLLIGKF 130 (208)
Q Consensus 90 ~~~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 130 (208)
-+.++.+.-+++..+....+.+....++.....+.+.+.+.
T Consensus 44 l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~r~ 84 (85)
T smart00228 44 LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRG 84 (85)
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence 45688888899999999999999888888777888877654
No 89
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=34.67 E-value=64 Score=29.58 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=35.4
Q ss_pred cccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEEE
Q psy10226 58 ASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVT 97 (208)
Q Consensus 58 ~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v~ 97 (208)
...|.+..||+++-|+++-..+-|-.++++++++.|..|.
T Consensus 385 ~ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~ 424 (477)
T PRK05500 385 LIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVR 424 (477)
T ss_pred eEecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEE
Confidence 3456688999999999999999999999999999987663
No 90
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=33.88 E-value=42 Score=25.32 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=26.2
Q ss_pred CcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCE
Q psy10226 55 GAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNV 95 (208)
Q Consensus 55 g~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~ 95 (208)
.+..-.-++.+|+.|+++.| .+.+.|.++|+.+...
T Consensus 89 ~~~~~varVk~G~iifEi~~-----~~~~~a~~al~~a~~K 124 (138)
T PRK09203 89 SPEYWVAVVKPGRILFEIAG-----VSEELAREALRLAAAK 124 (138)
T ss_pred CCcEEEEEECCCCEEEEEeC-----CCHHHHHHHHHHHhcc
Confidence 33334445889999999988 4567888888887553
No 91
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=33.72 E-value=66 Score=25.13 Aligned_cols=37 Identities=30% Similarity=0.474 Sum_probs=33.3
Q ss_pred cCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEE
Q psy10226 60 DGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVV 96 (208)
Q Consensus 60 ~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v 96 (208)
.|.+..|++++-|+++--.+-|...++++++++|..+
T Consensus 101 ~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~v 137 (176)
T PRK13812 101 EGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATV 137 (176)
T ss_pred EecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeE
Confidence 3558899999999999999999999999999998764
No 92
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=33.42 E-value=1.3e+02 Score=19.22 Aligned_cols=37 Identities=35% Similarity=0.531 Sum_probs=31.2
Q ss_pred hCCCEEEEeeeeeCCCCCHHHHHHHHHhcCCeEEEEE
Q psy10226 91 RAGNVVTLLGEKNLENVTHEEAVATLKATHERVNLLI 127 (208)
Q Consensus 91 ~~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~v 127 (208)
+.|+.+.-+++..+....+.+....++.....+.+.+
T Consensus 45 ~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v 81 (82)
T cd00992 45 RVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV 81 (82)
T ss_pred CCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence 4688888899999999999999999998776666654
No 93
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=33.19 E-value=63 Score=25.00 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=32.5
Q ss_pred CCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEE
Q psy10226 61 GRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVV 96 (208)
Q Consensus 61 G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v 96 (208)
|.+..|++++-|+++--.+-|...++++|+++|..+
T Consensus 103 g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v 138 (173)
T TIGR00336 103 GELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQV 138 (173)
T ss_pred cCCCCCCEEEEEeccccChHHHHHHHHHHHHcCCeE
Confidence 447889999999999999999999999999998755
No 94
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=32.09 E-value=43 Score=24.07 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=24.5
Q ss_pred ccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCE
Q psy10226 57 AASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNV 95 (208)
Q Consensus 57 A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~ 95 (208)
....-++++|+.|+++.+.+. .+.+.+.++.+...
T Consensus 70 ~~~~a~v~~G~iifEi~~~~~----~~~~~~alk~a~~K 104 (112)
T cd01433 70 EGWVARVKPGQILFEVRGVPE----EEVAKEALRRAAKK 104 (112)
T ss_pred cEEEEEECCCCEEEEEeCcCc----HHHHHHHHHHhhcc
Confidence 333345788999999998665 66777777766543
No 95
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=31.89 E-value=75 Score=25.60 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=32.6
Q ss_pred CCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEE
Q psy10226 61 GRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVV 96 (208)
Q Consensus 61 G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v 96 (208)
|.+..|++++-|+++--.+-|-.+++++|+++|..+
T Consensus 113 g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~v 148 (206)
T PRK13809 113 GLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVV 148 (206)
T ss_pred cccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEE
Confidence 447799999999999999999999999999998765
No 96
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=31.70 E-value=44 Score=24.80 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=24.7
Q ss_pred CcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCC
Q psy10226 55 GAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGN 94 (208)
Q Consensus 55 g~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~ 94 (208)
.+..-.-++++|+.|++|.+ .+.+.|.++|+.+..
T Consensus 88 ~~~~~varV~~G~ilfEi~~-----~~~~~a~~al~~a~~ 122 (126)
T TIGR01164 88 NPEYWVAVVKPGKILFEIAG-----VPEEVAREAFRLAAS 122 (126)
T ss_pred CCCEEEEEECCCCEEEEEeC-----CCHHHHHHHHHHHHh
Confidence 33333445889999999988 456777888886643
No 97
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=31.26 E-value=60 Score=21.28 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=22.5
Q ss_pred CCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy10226 63 LQVNDVIHQVNHVTVVDVPHSAAVEALK 90 (208)
Q Consensus 63 L~~gD~Il~Vng~~l~~~t~~~av~~l~ 90 (208)
+++||.++-=.|..++.++.++|.+.+.
T Consensus 38 v~~Gd~VLVHaG~Ai~~ideeeA~e~l~ 65 (68)
T PF01455_consen 38 VKVGDYVLVHAGFAIEKIDEEEAEETLD 65 (68)
T ss_dssp B-TT-EEEEETTEEEEEE-HHHHHHHHH
T ss_pred CCCCCEEEEecChhheeCCHHHHHHHHH
Confidence 8899999999999999999999887764
No 98
>PLN02293 adenine phosphoribosyltransferase
Probab=30.94 E-value=78 Score=25.03 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=32.7
Q ss_pred CCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEE
Q psy10226 61 GRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVV 96 (208)
Q Consensus 61 G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v 96 (208)
|.+..|++++-|+++--.+-|...+++++++.|..+
T Consensus 120 ~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~ 155 (187)
T PLN02293 120 GAVEPGERALVIDDLIATGGTLCAAINLLERAGAEV 155 (187)
T ss_pred CccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEE
Confidence 447899999999999999999999999999998864
No 99
>KOG3552|consensus
Probab=30.05 E-value=56 Score=32.53 Aligned_cols=40 Identities=15% Similarity=0.322 Sum_probs=37.1
Q ss_pred hCCCEEEEeeeeeCCCCCHHHHHHHHHhcCCeEEEEEccC
Q psy10226 91 RAGNVVTLLGEKNLENVTHEEAVATLKATHERVNLLIGKF 130 (208)
Q Consensus 91 ~~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~v~~~ 130 (208)
+.|++|..+|+..++..+.+.++++++.+.+.+.|+|..+
T Consensus 93 ~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qP 132 (1298)
T KOG3552|consen 93 QPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQP 132 (1298)
T ss_pred cCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEecc
Confidence 4578888899999999999999999999999999999986
No 100
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=29.86 E-value=87 Score=24.71 Aligned_cols=35 Identities=14% Similarity=0.298 Sum_probs=32.2
Q ss_pred CCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEEE
Q psy10226 63 LQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVT 97 (208)
Q Consensus 63 L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v~ 97 (208)
+..|++++-|+++--.+-|...++++++++|..+.
T Consensus 111 ~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv 145 (187)
T PRK12560 111 IEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVS 145 (187)
T ss_pred CCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEE
Confidence 77899999999999999999999999999998653
No 101
>KOG0708|consensus
Probab=28.74 E-value=55 Score=28.82 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=31.9
Q ss_pred EECCeecCCCCHHHHHHHHHhCCCEEEEeeeeeCCCC
Q psy10226 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKNLENV 107 (208)
Q Consensus 71 ~Vng~~l~~~t~~~av~~l~~~~~~v~l~~~~~~~~~ 107 (208)
.+||+++.+.+|.++...++.+++.+.+.....++++
T Consensus 2 ~~~~~~~~~~~~~~~a~~l~~sg~~~~i~~q~~~e~~ 38 (359)
T KOG0708|consen 2 SVNGVDGRNATHEDAAAALKTSGDSVYIRAQYRPEEY 38 (359)
T ss_pred cccccccccchHHHHHHHhhcCCCceEEEEEechhhh
Confidence 5789999999999999999999999999776655543
No 102
>PF03612 EIIBC-GUT_N: Sorbitol phosphotransferase enzyme II N-terminus; InterPro: IPR011618 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria. Escherichia coli consists of IIA protein, a IIC protein and a IIBC protein. This entry represents the N-terminal conserved region of the IIBC component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=26.24 E-value=1.7e+02 Score=23.24 Aligned_cols=66 Identities=21% Similarity=0.381 Sum_probs=36.7
Q ss_pred EEEEEeCCCccc--EEEeccCCCCCCCCCCcEEEEEECCCCc-------ccccCCCCCCCEEEEECCeecCCCCHHHHHH
Q psy10226 17 EIRLERGGAGLG--FSIAGGTDNPHIGDDTSIYITKLIPGGA-------AASDGRLQVNDVIHQVNHVTVVDVPHSAAVE 87 (208)
Q Consensus 17 ~v~l~k~~~~lG--f~i~gg~~~~~~~~~~~i~I~~v~~gg~-------A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~ 87 (208)
.|++.|+.+||| +.|..- ...-.|..|.-|+. |+..| . -.|||..-. .+.++..-
T Consensus 2 ~v~I~kG~gGwGGPL~i~pt--------~~k~Kiv~iTGG~i~pia~kIaelTG-~------eaVdGFkt~-vPdeEi~~ 65 (183)
T PF03612_consen 2 SVKIEKGSGGWGGPLVITPT--------EKKNKIVYITGGGIPPIADKIAELTG-A------EAVDGFKTS-VPDEEIAC 65 (183)
T ss_pred cEEEecCCCCcCCCEEEeec--------CCCCEEEEEeCCCCCHHHHHHHHHHC-C------eecCCccCC-CChHHeEE
Confidence 478889888898 555431 11224444554432 22222 1 245665533 44666666
Q ss_pred HHHhCCCEEEE
Q psy10226 88 ALKRAGNVVTL 98 (208)
Q Consensus 88 ~l~~~~~~v~l 98 (208)
.+-.||++++.
T Consensus 66 vVIDCGGTlRC 76 (183)
T PF03612_consen 66 VVIDCGGTLRC 76 (183)
T ss_pred EEEecCCceee
Confidence 67777777776
No 103
>PRK14367 Maf-like protein; Provisional
Probab=26.19 E-value=3.4e+02 Score=21.71 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=26.4
Q ss_pred CCCCCEEEEECCeecCC-CCHHHHHHHHHhC-CCEEEE
Q psy10226 63 LQVNDVIHQVNHVTVVD-VPHSAAVEALKRA-GNVVTL 98 (208)
Q Consensus 63 L~~gD~Il~Vng~~l~~-~t~~~av~~l~~~-~~~v~l 98 (208)
+-..|.|+.+||.-+.. .+.++|.++|+.- |....+
T Consensus 72 vI~aDTvV~~dg~IlgKP~~~eeA~~~L~~lsG~~h~V 109 (202)
T PRK14367 72 LITADTCVVSDGIILGKPRSQAEAIEFLNRLSGKQHTV 109 (202)
T ss_pred EEEeCcEEEECCEEecCCCCHHHHHHHHHHhCCCCeEE
Confidence 44569999999987775 6778999999963 444444
No 104
>PRK09213 pur operon repressor; Provisional
Probab=25.50 E-value=1.2e+02 Score=25.60 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=32.4
Q ss_pred CCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEEE
Q psy10226 63 LQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVT 97 (208)
Q Consensus 63 L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v~ 97 (208)
|..|++++-|+++--.+-|...+++++++++..|.
T Consensus 193 l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~Vv 227 (271)
T PRK09213 193 LKEGSRVLIVDDFMKAGGTINGMISLLKEFDAEVV 227 (271)
T ss_pred cCCcCEEEEEeeecccCHhHHHHHHHHHHCCCEEE
Confidence 78999999999999999999999999999988653
No 105
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=25.19 E-value=1.2e+02 Score=23.66 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=33.7
Q ss_pred CCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEEEE
Q psy10226 61 GRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98 (208)
Q Consensus 61 G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v~l 98 (208)
+.|..||+++=|++.--.+-|-.-..+++.++|..+.-
T Consensus 111 ~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg 148 (179)
T COG0503 111 DALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVVG 148 (179)
T ss_pred hhCCCCCEEEEEecchhcChHHHHHHHHHHHCCCEEEE
Confidence 34889999999999999999999999999999987643
No 106
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=24.72 E-value=40 Score=17.70 Aligned_cols=13 Identities=46% Similarity=0.820 Sum_probs=10.9
Q ss_pred cccCCceeeccCC
Q psy10226 195 VKENGNVTCTDSG 207 (208)
Q Consensus 195 ~~~~~~~~~~~~~ 207 (208)
++.+|+++++|++
T Consensus 9 v~~~g~i~VaD~~ 21 (28)
T PF01436_consen 9 VDSDGNIYVADSG 21 (28)
T ss_dssp EETTSEEEEEECC
T ss_pred EeCCCCEEEEECC
Confidence 4799999999975
No 107
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=24.31 E-value=55 Score=28.12 Aligned_cols=52 Identities=23% Similarity=0.368 Sum_probs=31.4
Q ss_pred CCCcccEEEeccCCCCCCCC-CCcEEEEEECCCCcccccCCCCCCCEEEEECC
Q psy10226 23 GGAGLGFSIAGGTDNPHIGD-DTSIYITKLIPGGAAASDGRLQVNDVIHQVNH 74 (208)
Q Consensus 23 ~~~~lGf~i~gg~~~~~~~~-~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng 74 (208)
+...||+-|.||.-.+..+. ...+.|..+...-+--+++.-++||.|+.+-.
T Consensus 119 ~a~kfgvpivGGhthpd~~y~vl~v~i~gl~~~e~Ii~s~~Ak~GD~lI~~~d 171 (324)
T COG2144 119 GARKFGVPIVGGHTHPDTPYCVLDVVIGGLIAEEPIITSGTAKPGDLLIFVGD 171 (324)
T ss_pred HHHhcCCceecCccCCCCCCceeeeEEecccccccccccCCCCcCCEEEEEec
Confidence 34579999999976553222 12223333333344444666899999998643
No 108
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=23.44 E-value=36 Score=26.04 Aligned_cols=38 Identities=26% Similarity=0.332 Sum_probs=25.9
Q ss_pred CCcccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEE
Q psy10226 54 GGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVV 96 (208)
Q Consensus 54 gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v 96 (208)
|.|-...-++++|+.|++|.|++-+ .|.+.|+.+...+
T Consensus 91 G~pegwaArVkpG~vlfei~g~~e~-----~A~EAlr~Aa~KL 128 (146)
T COG0197 91 GKPEGWAARVKPGRVLFEIAGVPEE-----LAREALRRAAAKL 128 (146)
T ss_pred CCccEEEEEecCCcEEEEEecCcHH-----HHHHHHHHHhhcC
Confidence 3344444458999999999885443 3888888776543
No 109
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=23.28 E-value=1.3e+02 Score=25.43 Aligned_cols=34 Identities=9% Similarity=0.097 Sum_probs=31.9
Q ss_pred CCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEE
Q psy10226 63 LQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVV 96 (208)
Q Consensus 63 L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v 96 (208)
|..|++++-|+++--.+-|-..+++++++++..+
T Consensus 191 l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~V 224 (268)
T TIGR01743 191 LKTGSKVLIIDDFMKAGGTINGMINLLDEFDAEV 224 (268)
T ss_pred CCCcCEEEEEeeecccCHHHHHHHHHHHHCCCEE
Confidence 7899999999999999999999999999998765
No 110
>CHL00044 rpl16 ribosomal protein L16
Probab=22.03 E-value=66 Score=24.18 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=24.2
Q ss_pred cccccCCCCCCCEEEEECCeecCCCCHHHHHHHHHhCCCE
Q psy10226 56 AAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNV 95 (208)
Q Consensus 56 ~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~ 95 (208)
+.+-.-++++|+.|+++.|++ .+.|.++|+.+...
T Consensus 90 ~~~~va~V~~G~ilfEi~g~~-----~~~ak~al~~a~~K 124 (135)
T CHL00044 90 PEYWVAVVKPGRILYEMGGVS-----ETIARAAIKIAAYK 124 (135)
T ss_pred ccEEEEEECCCcEEEEEeCCC-----HHHHHHHHHHHhhc
Confidence 333344588999999998844 35677888776543
No 111
>PRK06031 phosphoribosyltransferase; Provisional
Probab=20.90 E-value=1.3e+02 Score=24.80 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=31.4
Q ss_pred CCCCCEEEEECCeecCCCCHHHHHHHHHhCCCEEE
Q psy10226 63 LQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVT 97 (208)
Q Consensus 63 L~~gD~Il~Vng~~l~~~t~~~av~~l~~~~~~v~ 97 (208)
+..|++++-|+++--.|-|...++++++++|..+.
T Consensus 151 ~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vv 185 (233)
T PRK06031 151 LLEGRRVALIDDVISSGASIVAGLRLLAACGIEPA 185 (233)
T ss_pred cCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEE
Confidence 45799999999999999999999999999987654
No 112
>KOG3686|consensus
Probab=20.80 E-value=1.4e+02 Score=28.85 Aligned_cols=69 Identities=14% Similarity=0.009 Sum_probs=53.0
Q ss_pred CCCcceEEEEEEeC-CCcccEEEeccCCCCCCCCCCcEEEEEECCCCcccccCCCCCCCEEEEECCeecCCCCHHHHHHH
Q psy10226 10 DSEWEYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEA 88 (208)
Q Consensus 10 ~~~~~~~~v~l~k~-~~~lGf~i~gg~~~~~~~~~~~i~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~~~t~~~av~~ 88 (208)
+..++..+..+.+. .+.+||.+.- ...+..+...+-|+.+| + |-++..++...+.-.+|+.+..+
T Consensus 588 t~G~e~~~~~~~r~~~~~~~fhv~~-----------e~~~~~~e~~~~~~~a~-l--g~~~~~~~~~~~~Tla~~~~~~l 653 (740)
T KOG3686|consen 588 TGGLEVETRALYRADAEAVGFHVST-----------EGNGDVQEKWKHAGNAE-L--GSRENTRKKYTRETLATKFCDVL 653 (740)
T ss_pred ccCceeeeeeecccccccccceecc-----------cccceeecccccccccc-c--cceeeeehhhhhhhhhhhhhhhh
Confidence 44456666777764 4448888775 23667788889999999 6 99999999999999899988888
Q ss_pred HHhC
Q psy10226 89 LKRA 92 (208)
Q Consensus 89 l~~~ 92 (208)
++-.
T Consensus 654 ~~~s 657 (740)
T KOG3686|consen 654 LVLS 657 (740)
T ss_pred hhhh
Confidence 7743
No 113
>PRK10943 cold shock-like protein CspC; Provisional
Probab=20.42 E-value=2.6e+02 Score=18.15 Aligned_cols=44 Identities=11% Similarity=0.297 Sum_probs=23.6
Q ss_pred EEEEEeCCCcccEEEeccCCCCCCCCCCcEEEE--EECCCCcccccCCCCCCCEEEE
Q psy10226 17 EIRLERGGAGLGFSIAGGTDNPHIGDDTSIYIT--KLIPGGAAASDGRLQVNDVIHQ 71 (208)
Q Consensus 17 ~v~l~k~~~~lGf~i~gg~~~~~~~~~~~i~I~--~v~~gg~A~~~G~L~~gD~Il~ 71 (208)
.|+--....||||-.... +...+|+. .+...+ . .+|..||+|--
T Consensus 7 ~Vk~f~~~kGfGFI~~~~-------g~~dvFvH~s~l~~~g---~-~~l~~G~~V~f 52 (69)
T PRK10943 7 QVKWFNESKGFGFITPAD-------GSKDVFVHFSAIQGNG---F-KTLAEGQNVEF 52 (69)
T ss_pred EEEEEeCCCCcEEEecCC-------CCeeEEEEhhHccccC---C-CCCCCCCEEEE
Confidence 344444578999954431 12345644 444333 1 23888887754
No 114
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=20.36 E-value=88 Score=28.10 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=27.3
Q ss_pred EEEEECCCCcccccCCCCCCCEEEEEC-CeecCCC
Q psy10226 47 YITKLIPGGAAASDGRLQVNDVIHQVN-HVTVVDV 80 (208)
Q Consensus 47 ~I~~v~~gg~A~~~G~L~~gD~Il~Vn-g~~l~~~ 80 (208)
.|..+.+++.++..| +..||.++.|| |..+..+
T Consensus 4 ~i~~v~~~~~~d~~G-fe~~~~l~~Vn~~~~~~~c 37 (414)
T COG1625 4 KISKVGGISGADCDG-FEEGDYLLKVNPGFGCKDC 37 (414)
T ss_pred ceeeccCCCcccccC-ccccceeeecCCCCCCCcC
Confidence 577888899999999 99999999999 7666554
No 115
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=20.18 E-value=62 Score=28.17 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=26.7
Q ss_pred EEEEECCCCcccccCCCCCCCEEEEECCeecC
Q psy10226 47 YITKLIPGGAAASDGRLQVNDVIHQVNHVTVV 78 (208)
Q Consensus 47 ~I~~v~~gg~A~~~G~L~~gD~Il~Vng~~l~ 78 (208)
-+-+|.+-++|+.+| +-+||.|+-+|+..+.
T Consensus 66 ~~lrv~~~~~~e~~~-~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 66 EVLRVNPESPAEKAG-MVVGDYILGINEDPLR 96 (417)
T ss_pred hheeccccChhHhhc-cccceeEEeecCCcHH
Confidence 466788899999999 9999999999986643
Done!