RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10226
(208 letters)
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal
transduction, structural genom structural genomics
consortium, SGC, signaling protein; 1.85A {Homo
sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A
1iu0_A 1iu2_A
Length = 102
Score = 132 bits (333), Expect = 3e-40
Identities = 60/89 (67%), Positives = 70/89 (78%)
Query: 11 SEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
S ++YEEI LERG +GLGFSIAGG DNPH+ DD I+ITK+IPGGAAA DGRL VND +
Sbjct: 1 SMFKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVL 60
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+VN V V +V HS AVEALK AG VV L+
Sbjct: 61 RVNEVDVSEVVHSRAVEALKEAGPVVRLV 89
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 129 bits (327), Expect = 2e-39
Identities = 39/90 (43%), Positives = 55/90 (61%)
Query: 10 DSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVI 69
D EEI L RG +GLGF+I GGTD ++ +D+ IY++++ GAAA DGRLQ D I
Sbjct: 3 DYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKI 62
Query: 70 HQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
VN + ++ H AV+ + AG V+L
Sbjct: 63 LSVNGQDLKNLLHQDAVDLFRNAGYAVSLR 92
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 126 bits (319), Expect = 5e-38
Identities = 38/94 (40%), Positives = 51/94 (54%)
Query: 6 VNGGDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQV 65
+ E+ E+ + LG SI+G D G+ T IY+ LIPG AAA DGR++
Sbjct: 6 SDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEP 65
Query: 66 NDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
ND I +V+ V V + S VE L+ AGN V LL
Sbjct: 66 NDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLL 99
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 126 bits (317), Expect = 1e-37
Identities = 39/90 (43%), Positives = 55/90 (61%)
Query: 10 DSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVI 69
D EEI L RG +GLGF+I GGTD ++ +D+ IY++++ GAAA DGRLQ D I
Sbjct: 13 DYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKI 72
Query: 70 HQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
VN + ++ H AV+ + AG V+L
Sbjct: 73 LSVNGQDLKNLLHQDAVDLFRNAGYAVSLR 102
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 120 bits (304), Expect = 5e-36
Identities = 44/87 (50%), Positives = 54/87 (62%)
Query: 13 WEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQV 72
E+ L +G GLGFSIAGG N HI D SIYITK+I GGAA DGRLQ+ D + V
Sbjct: 2 MTIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV 61
Query: 73 NHVTVVDVPHSAAVEALKRAGNVVTLL 99
N+ + DV H AV +LK ++V L
Sbjct: 62 NNTNLQDVRHEEAVASLKNTSDMVYLK 88
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 121 bits (306), Expect = 6e-36
Identities = 45/88 (51%), Positives = 54/88 (61%)
Query: 12 EWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQ 71
EI+L +G GLGFSIAGG N HI D SIY+TK+I GGAA DGRLQV D +
Sbjct: 22 SMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLM 81
Query: 72 VNHVTVVDVPHSAAVEALKRAGNVVTLL 99
VN+ ++ +V H AV LK VV L
Sbjct: 82 VNNYSLEEVTHEEAVAILKNTSEVVYLK 109
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 123 bits (311), Expect = 9e-36
Identities = 65/89 (73%), Positives = 72/89 (80%)
Query: 11 SEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
EYEEI LERG +GLGFSIAGGTDNPHIGDD SI+ITK+IPGGAAA DGRL+VND I
Sbjct: 2 GSMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 61
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
VN V V +V HSAAVEALK AG++V L
Sbjct: 62 FVNEVDVREVTHSAAVEALKEAGSIVRLY 90
Score = 103 bits (259), Expect = 5e-28
Identities = 48/87 (55%), Positives = 56/87 (64%)
Query: 13 WEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQV 72
+ EI+L +G GLGFSIAGG N HI D SIY+TK+I GGAA DGRLQ+ D I V
Sbjct: 99 EKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 158
Query: 73 NHVTVVDVPHSAAVEALKRAGNVVTLL 99
N V + DV H AV ALK +VV L
Sbjct: 159 NSVGLEDVMHEDAVAALKNTYDVVYLK 185
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens}
PDB: 2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 119 bits (301), Expect = 2e-35
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
Query: 8 GGDSEWEYEEIRLERG-GAGLGFSIAGGTDNPHI-GDDTSIYITKLIPGGAAASDGRLQV 65
G WE + L R G G G +I+GG DNPH +TSI I+ ++ GG A +G+LQ
Sbjct: 1 GSHMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQE 58
Query: 66 NDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
ND + VN V++ +V H+ AV+ L+++G +
Sbjct: 59 NDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKIT 92
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 119 bits (301), Expect = 3e-35
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 10 DSEWEYEEIRLER-GGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDV 68
S +E + L R G LG I G H G+ + IY+ +IPG AA +G +QVND
Sbjct: 11 SSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDK 70
Query: 69 IHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
I V+ V + + VE L+ AG VV L
Sbjct: 71 IVAVDGVNIQGFANHDVVEVLRNAGQVVHLT 101
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 105
Score = 117 bits (295), Expect = 1e-34
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 8 GGDSEWEYEEIRLERGGAGLGFSIAGGTDN-PHIGDDTSIYITKLIPGGAAASDGRLQVN 66
G L R GLGFSIAGG + P+ D I+++++ GGAA G LQV
Sbjct: 1 GSSGSSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVG 60
Query: 67 DVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
D + +N V V + H AV L A + LL
Sbjct: 61 DRVLSINGVDVTEARHDHAVSLLTAASPTIALL 93
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 117 bits (295), Expect = 2e-34
Identities = 44/86 (51%), Positives = 56/86 (65%)
Query: 14 EYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVN 73
+ EI+L +G GLGFSIAGG N HI D SIY+TK+I GGAA DG+LQ+ D + VN
Sbjct: 3 KIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN 62
Query: 74 HVTVVDVPHSAAVEALKRAGNVVTLL 99
V++ +V H AV ALK + V L
Sbjct: 63 SVSLEEVTHEEAVTALKNTSDFVYLK 88
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1,
HOST-virus interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 114 bits (288), Expect = 2e-33
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 11 SEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
S E ++ L + GLG +IAG + + + I++ + A DGR+Q+ D I
Sbjct: 1 SMSETFDVELTKNVQGLGITIAGYIGDKKLEP-SGIFVKSITKSSAVEHDGRIQIGDQII 59
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
V+ + + AVE L+ G V L
Sbjct: 60 AVDGTNLQGFTNQQAVEVLRHTGQTVLLT 88
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens}
Length = 97
Score = 114 bits (287), Expect = 2e-33
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 13 WEYEEIRLERGGAGLGFSIAGGTDNPH-IGDDTSIYITKLIPGGAAASDGRLQVNDVIHQ 71
E + + R GLG SIAGG + GDD I+I+++ G AA G ++V D + +
Sbjct: 2 MEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLE 60
Query: 72 VNHVTVVDVPHSAAVEALKRAGNVVTLL 99
VN V + H AVEAL+ AG V +
Sbjct: 61 VNGVALQGAEHHEAVEALRGAGTAVQMR 88
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 114 bits (288), Expect = 2e-33
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 11 SEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
S + LERG +GLG + G +YI L+PG AA+DGRL + D I
Sbjct: 5 SSGYVFTVELERGPSGLGMGLIDGMHTHL--GAPGLYIQTLLPGSPAAADGRLSLGDRIL 62
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHE 110
+VN +++ + + AV+ ++ G + L K+ +
Sbjct: 63 EVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKK 102
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 114 bits (288), Expect = 2e-33
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 9 GDSEWEYEEIRLERG-GAGLGFSIAGGTD----NPHIGDDTSIYITKLIPGGAAASDGRL 63
G S E+ +++ G LG SI GG NP D I+I+K+ P GAA DGRL
Sbjct: 4 GSSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRL 63
Query: 64 QVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+V + +VN +++ + H AV+ L+ G+ +T+L
Sbjct: 64 RVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVL 99
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 114 bits (287), Expect = 3e-33
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 11 SEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
+ + L RG AG G ++ GG D DT + + L+ G A GRL+V D++
Sbjct: 8 QASGHFSVELVRGYAGFGLTLGGGRDVAG---DTPLAVRGLLKDGPAQRCGRLEVGDLVL 64
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+N + + H+ AVE ++ G + L+
Sbjct: 65 HINGESTQGLTHAQAVERIRAGGPQLHLV 93
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 113 bits (286), Expect = 5e-33
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 9 GDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIG-DDTSIYITKLIPGGAAASDGRLQVND 67
G S E + LE+ GLG SI G G + I++ + GGAA DGR+QVND
Sbjct: 4 GSSGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVND 63
Query: 68 VIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
I +V+ +++V V + A L+ V +
Sbjct: 64 QIVEVDGISLVGVTQNFAATVLRNTKGNVRFV 95
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 112 bits (281), Expect = 2e-32
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 8 GGDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVND 67
+++Y + +E+G G GFSI GG + +Y+ +L G A +GR++V D
Sbjct: 5 SSGQDFDYFTVDMEKGAKGFGFSIRGGREYKM-----DLYVLRLAEDGPAIRNGRMRVGD 59
Query: 68 VIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
I ++N + D+ H+ A+E +K G V LL
Sbjct: 60 QIIEINGESTRDMTHARAIELIKSGGRRVRLL 91
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 112 bits (282), Expect = 2e-32
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 12 EWEYEEIRLERGGAGLGFSIAGGTDNPHIG-DDTSIYITKLIPGGAAASDGRLQVNDVIH 70
E + LE+ GLG SI G +G + I++ + GGAA DGR+QVND++
Sbjct: 2 HMELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLV 61
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+V+ ++V V S A L+ V +
Sbjct: 62 EVDGTSLVGVTQSFAASVLRNTKGRVRFM 90
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 112 bits (281), Expect = 2e-32
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 9 GDSEWEYEEIRLERGGAGLGFSIAGGTDNPH-IGDDTSIYITKLIPGGAAASDGRLQVND 67
E E + + R GLG SIAGG + GDD I+I+++ G AA G ++V D
Sbjct: 10 ARIEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGD 68
Query: 68 VIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+ +VN V + H AVEAL+ AG V +
Sbjct: 69 KLLEVNGVALQGAEHHEAVEALRGAGTAVQMR 100
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 111 bits (280), Expect = 5e-32
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 2 SCEKVNGGDSEWEYEEIRLERG-GAGLGFSIAGGTDNPHIGD-DTSIYITKLIPGGAAAS 59
S + WE + L++ G G +++GG DNPH + +TSI I+ ++PGG A
Sbjct: 2 SSGSSGMEEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA-- 59
Query: 60 DGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
DG LQ ND + VN + DV HS AV+ L+++G + ++
Sbjct: 60 DGLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIV 99
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 111 bits (279), Expect = 5e-32
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 7 NGGDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVN 66
N ++ + LERG G GFS+ GG + + +Y+ +L G A G++++
Sbjct: 17 NLYFQSMDFYTVELERGAKGFGFSLRGGREY-----NMDLYVLRLAEDGPAERSGKMRIG 71
Query: 67 DVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKNLENV 107
D I ++N T ++ HS A+E +K G V L ++ +V
Sbjct: 72 DEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGETSV 112
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 109 bits (275), Expect = 1e-31
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 14 EYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVN 73
+ E+ L + LG S+ GG + IY+ +IP GAA SDGR+ D + VN
Sbjct: 5 DIFEVELAKNDNSLGISVTGGVNTSV--RHGGIYVKAVIPQGAAESDGRIHKGDRVLAVN 62
Query: 74 HVTVVDVPHSAAVEALKRAGNVVTLLGEK 102
V++ H AVE L+ G VV LL EK
Sbjct: 63 GVSLEGATHKQAVETLRNTGQVVHLLLEK 91
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 110 bits (276), Expect = 2e-31
Identities = 40/90 (44%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 10 DSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVI 69
S + + I LERG GLGFSI GG +PH D IY+ + GAA+ DGRL+ D I
Sbjct: 21 QSMPQCKSITLERGPDGLGFSIVGGYGSPH--GDLPIYVKTVFAKGAASEDGRLKRGDQI 78
Query: 70 HQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
VN ++ V H AV LKR VTL+
Sbjct: 79 IAVNGQSLEGVTHEEAVAILKRTKGTVTLM 108
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 109 bits (274), Expect = 2e-31
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 13 WEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQV 72
E+ L + G GF I GG + + IT + PGG A +G ++ D + V
Sbjct: 2 MRTVEVTLHKEGNTFGFVIRGGAHDDR-NKSRPVVITSVRPGGPADREGTIKPGDRLLSV 60
Query: 73 NHVTVVDVPHSAAVEALKRAGNVVTLL 99
+ + ++ H+ A+ LK+ G LL
Sbjct: 61 DGIRLLGTTHAEAMSILKQCGQEAALL 87
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 108 bits (273), Expect = 2e-31
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 17 EIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
I + +G GLG SI GG+D I I ++ GAA DGRL D I +VN +
Sbjct: 7 TIEISKGRTGLGLSIVGGSDTLLGA----IIIHEVYEEGAACKDGRLWAGDQILEVNGID 62
Query: 77 VVDVPHSAAVEALKRAGNVVTLL 99
+ H A+ L++ V L
Sbjct: 63 LRKATHDEAINVLRQTPQRVRLT 85
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 108 bits (272), Expect = 5e-31
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 11 SEWEYEEIRLERGGAGLGFSIAGG---TDNPHIGDDTSIYITKLIPGGAAASDGRLQVND 67
S + + L R LGF+I GG DN I+++K++ G AA +G LQ++D
Sbjct: 5 SSGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHD 64
Query: 68 VIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
I +VN + H AVEA K A + +
Sbjct: 65 RIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQ 96
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 109 bits (273), Expect = 6e-31
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 9 GDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDV 68
D E I LE+ GLG S+AG D + I++ + P G AA+DGR+++ D
Sbjct: 20 ADLPGELHIIELEKDKNGLGLSLAGNKDRSRMS----IFVVGINPEGPAAADGRMRIGDE 75
Query: 69 IHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+ ++N+ + H A +K A + V L+
Sbjct: 76 LLEINNQILYGRSHQNASAIIKTAPSKVKLV 106
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 106 bits (267), Expect = 4e-30
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 11 SEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
+ E + G AGLG S+ G G D I+I +I GGAA DGRL++ND +
Sbjct: 23 EQLTLEIPLNDSGSAGLGVSLKGNKSRET-GTDLGIFIKSIIHGGAAFKDGRLRMNDQLI 81
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
VN T++ + A+E L+R+ ++ +
Sbjct: 82 AVNGETLLGKSNHEAMETLRRSMSMEGNI 110
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 106 bits (266), Expect = 4e-30
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 14 EYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVN 73
+ I + +G +GLG SI GG D P I I ++ GAAA DGRL D I +VN
Sbjct: 17 QEMIIEISKGRSGLGLSIVGGKDTPLNA----IVIHEVYEEGAAARDGRLWAGDQILEVN 72
Query: 74 HVTVVDVPHSAAVEALKRAGNVVTLL 99
V + + H A+ AL++ V L+
Sbjct: 73 GVDLRNSSHEEAITALRQTPQKVRLV 98
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 105 bits (263), Expect = 1e-29
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Query: 11 SEWEYEEIRLER-GGAGLGFSIAGGTDNPHIG-DDTSIYITKLIPGGAAASDGRLQVNDV 68
+ + L++ G G I G T I+I ++P A GRL+V D
Sbjct: 2 AGELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDR 61
Query: 69 IHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
I +N V + A ++ +K A + L
Sbjct: 62 ILSLNGKDVRNSTEQAVIDLIKEADFKIELE 92
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 104 bits (262), Expect = 2e-29
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 7 NGGDSEWEYEEIRLER-GGAGLGFSIAGGTDNPHIGDDTS--IYITKLIPGGAAASDGRL 63
+G + ++ + R G GF I + P G + I ++I G A +L
Sbjct: 3 SGSSGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKL 62
Query: 64 QVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+V D I VN +++++PH+ V+ +K AG VTL
Sbjct: 63 KVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLR 98
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 105 bits (263), Expect = 2e-29
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 7 NGGDSEWEYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQV 65
N + +++G LG SIAGG +P D I+I + P G AA +L+V
Sbjct: 17 NLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPL--GDVPIFIAMMHPTGVAAQTQKLRV 74
Query: 66 NDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
D I + + + H+ AV LK A + +
Sbjct: 75 GDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQ 108
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 113 bits (283), Expect = 2e-29
Identities = 69/94 (73%), Positives = 77/94 (81%)
Query: 6 VNGGDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQV 65
VNG + E EYEEI LERG +GLGFSIAGGTDNPHIGDD SI+ITK+IPGGAAA DGRL+V
Sbjct: 51 VNGTEGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRV 110
Query: 66 NDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
ND I VN V V +V HSAAVEALK AG++V L
Sbjct: 111 NDSILFVNEVDVREVTHSAAVEALKEAGSIVRLY 144
Score = 78.0 bits (191), Expect = 4e-17
Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 10 DSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVI 69
D E I + RG GLGF+I GG D I+I+ ++ GG A G L+ D I
Sbjct: 303 DIPREPRRIVIHRGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRKGDQI 356
Query: 70 HQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEE 111
VN V + + H A ALK AG VT++ + E + E
Sbjct: 357 LSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFE 398
Score = 74.6 bits (182), Expect = 7e-16
Identities = 54/152 (35%), Positives = 67/152 (44%)
Query: 13 WEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQV 72
+ EI+L +G GLGFSIAGG N HI D SIY+TK+I GGAA DGRLQ+ D I V
Sbjct: 153 EKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 212
Query: 73 NHVTVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEEAVATLKATHERVNLLIGKFEP 132
N V + DV H AV ALK +VV L K + T +L
Sbjct: 213 NSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHS 272
Query: 133 ALRNSTNHLAHPSDIPSSPNPSLTKEPMPPPP 164
+ + A P +P
Sbjct: 273 SYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDI 304
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling
protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 103 bits (259), Expect = 3e-29
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 7 NGGDSEWEYEEIRLERGGAGLGFSIAGGTD---NPHIGDDTSIYITKLIPGGAAASDGRL 63
G + + +R+E+ LGFSI+GG NP DD I++T++ P G A L
Sbjct: 4 MGHELAKQEIRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLL 60
Query: 64 QVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
Q D I Q N + +++ H AV LK N V L+
Sbjct: 61 QPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELI 96
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 103 bits (258), Expect = 6e-29
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 6 VNGGDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQV 65
+ E E + L + G+G SI D IY+ ++ GGAA DGRL
Sbjct: 3 LGSDHKEPEIITVTL-KKQNGMGLSIVAAKGAGQ--DKLGIYVKSVVKGGAADVDGRLAA 59
Query: 66 NDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
D + V+ ++V + A E + R +VVTL
Sbjct: 60 GDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLE 93
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 102 bits (257), Expect = 1e-28
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 7 NGGDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVN 66
+ + + L++ G GF+I GG + D + + +IP G AA DG+++
Sbjct: 12 DASQLKGTFLSTTLKKSNMGFGFTIIGGDEP-----DEFLQVKSVIPDGPAAQDGKMETG 66
Query: 67 DVIHQVNHVTVVDVPHSAAVEALKRA--GNVVTLL 99
DVI +N V V+ H+ V+ + G V L+
Sbjct: 67 DVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLV 101
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 102 bits (255), Expect = 2e-28
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 14 EYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTS----IYITKLIPGGAAASDGRLQVNDV 68
+ + L R LG SI GG + I+I ++ A +G L+ D
Sbjct: 4 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 63
Query: 69 IHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
I +V+ + + D H AVEA+++AGN V +
Sbjct: 64 IVEVDGMDLRDASHEQAVEAIRKAGNPVVFM 94
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 101 bits (254), Expect = 2e-28
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 14 EYEEIRLERG--GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQ 71
E ++ L + G LG + TD P ++I L+ GG AA DGRL ND +
Sbjct: 3 EILQVALHKRDSGEQLGIKLVRRTDEP------GVFILDLLEGGLAAQDGRLSSNDRVLA 56
Query: 72 VNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+N + A + ++ +G V L
Sbjct: 57 INGHDLKYGTPELAAQIIQASGERVNLT 84
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 93
Score = 101 bits (253), Expect = 2e-28
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 14 EYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVN 73
+ L + GLGF+I GG + ++ IYI+++IPGG A G L+ D + VN
Sbjct: 5 SSGVVELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQLLSVN 59
Query: 74 HVTVVDVPHSAAVEALKRAGNVVTLL 99
V+V H AVE LK A V L+
Sbjct: 60 GVSVEGEQHEKAVELLKAAQGSVKLV 85
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 101 bits (254), Expect = 2e-28
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 12 EWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQ 71
EE+ L G+GLGF I GG + + + ++PGG A DGRLQ D I +
Sbjct: 13 WGHVEEVELINDGSGLGFGIVGGKTSG-------VVVRTIVPGGLADRDGRLQTGDHILK 65
Query: 72 VNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+ V + + L+ GN V +L
Sbjct: 66 IGGTNVQGMTSEQVAQVLRNCGNSVRML 93
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 101 bits (253), Expect = 3e-28
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 8 GGDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVND 67
G S ++ ++ L R +G GF I GG + I I +I G+A DGRL D
Sbjct: 3 SGSSGYKELDVHLRRMESGFGFRILGGDE-----PGQPILIGAVIAMGSADRDGRLHPGD 57
Query: 68 VIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
+ V+ + V H ++ + A +
Sbjct: 58 ELVYVDGIPVAGKTHRYVIDLMHHAARNGQV 88
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 100 bits (252), Expect = 3e-28
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 13 WEYEEIRLERGGAGLGFSIAGGTD---NPHIGDDTSIYITKLIPGGAAASDGRLQVNDVI 69
+R+E+ LGFSI+GG NP DD I++T++ P G A LQ D I
Sbjct: 2 SMEIRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKI 58
Query: 70 HQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
Q N + +++ H AV LK N V L+
Sbjct: 59 IQANGYSFINIEHGQAVSLLKTFQNTVELI 88
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding;
1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 101 bits (253), Expect = 3e-28
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 11 SEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
S + L+R G LG +I+G + I I+ L GG A G + + D I
Sbjct: 2 SGAIIYTVELKRYGGPLGITISGTEEP-----FDPIIISSLTKGGLAERTGAIHIGDRIL 56
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+N ++ P S A+ L+ AG VTL
Sbjct: 57 AINSSSLKGKPLSEAIHLLQMAGETVTLK 85
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 101 bits (254), Expect = 4e-28
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 7 NGGDSEWEYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTS----IYITKLIPGGAAASDG 61
N + + L R LG SI GG + I+I ++ A +G
Sbjct: 17 NLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNG 76
Query: 62 RLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
L+ D I +V+ + + D H AVEA+++AGN V +
Sbjct: 77 TLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFM 114
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 100 bits (252), Expect = 5e-28
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 14 EYEEIRLERGGAGLGFSIAGGTD---NPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
+ E+ L + LG S+ D IY+ +IP GAA SDGR+ D +
Sbjct: 9 DIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVL 68
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHE 110
VN V++ H AVE L+ G VV LL EK + E
Sbjct: 69 AVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPTSKE 108
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 100 bits (252), Expect = 5e-28
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 10 DSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVI 69
D E I + RG GLGF+I GG I+I+ ++ GG A G L+ D I
Sbjct: 7 DIPREPRRIVIHRGSTGLGFNIVGGEXGE------GIFISFILAGGPADLSGELRKGDQI 60
Query: 70 HQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEEA 112
VN V + + H A ALK AG VT++ + E + EA
Sbjct: 61 LSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEA 103
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 99.6 bits (249), Expect = 8e-28
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 16 EEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHV 75
++I L R G GF I GG + IYI ++P GAA +DGRL+ D + V+
Sbjct: 4 QDIFLWRKETGFGFRILGGNEP-----GEPIYIGHIVPLGAADTDGRLRSGDELISVDGT 58
Query: 76 TVVDVPHSAAVEALKRAGNV--VTLL 99
V+ H V+ +++A V L
Sbjct: 59 PVIGKSHQLVVQLMQQAAKQGHVNLT 84
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 99.6 bits (249), Expect = 1e-27
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 11 SEWEYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVI 69
S + I L++ G GLG SI G + DT ++++ ++ GG A +DGRL D I
Sbjct: 1 SMSDTLTIGLQKKPGKGLGLSIVGKRN------DTGVFVSDIVKGGIADADGRLMQGDQI 54
Query: 70 HQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
VN V + A LK + VTL
Sbjct: 55 LMVNGEDVRNATQEAVAALLKCSLGTVTLE 84
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 101 bits (254), Expect = 1e-27
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 12 EWEYEEIRLERGGAGLGFSIAGGTD-NPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
E + LE+ GLG SI G + I++ + GGAA DGR+QVND++
Sbjct: 78 RLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLV 137
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+V+ ++V V S A L+ V +
Sbjct: 138 EVDGTSLVGVTQSFAASVLRNTKGRVRFM 166
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural
genomics, alternative splicing, cell cycle, cell
division, cell junction, coiled coil; NMR {Mus
musculus} PDB: 2ogp_A
Length = 111
Score = 100 bits (250), Expect = 1e-27
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 6 VNGGDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQV 65
V + I+L++G GLGFSI IG IY+ ++P GAA DGRL+
Sbjct: 3 VYNTKKVGKRLNIQLKKGTEGLGFSITSRDV--TIGGSAPIYVKNILPRGAAIQDGRLKA 60
Query: 66 NDVIHQVNHVTVVDVPHSAAVEALKRAG--NVVTLL 99
D + +VN V + V L+ V+LL
Sbjct: 61 GDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLL 96
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 100 bits (250), Expect = 1e-27
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 7 NGGDSEWEYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQV 65
N + + +++ G LG ++AGG + D IY+ + PGG + DGR++
Sbjct: 17 NLYFQSMHEKVVNIQKDPGESLGMTVAGGASHRE--WDLPIYVISVEPGGVISRDGRIKT 74
Query: 66 NDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
D++ V+ V + +V S AV LKR + + L
Sbjct: 75 GDILLNVDGVELTEVSRSEAVALLKRTSSSIVLK 108
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus
musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 99.3 bits (248), Expect = 1e-27
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 12 EWEYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
+ + + + GLG SI GG +N I I+K+ G AA L V D I
Sbjct: 2 SLQRRRVTVRKADAGGLGISIKGGRENKM-----PILISKIFKGLAADQTEALFVGDAIL 56
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
VN + H AV+ALK+ G V L
Sbjct: 57 SVNGEDLSSATHDEAVQALKKTGKEVVLE 85
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 102 bits (255), Expect = 2e-27
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 13 WEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQV 72
+ E+ L + G GF I GG + + IT + PGG A +G ++ D + V
Sbjct: 105 FRTVEVTLHKEGNTFGFVIRGGAHDDRNKSR-PVVITCVRPGGPADREGTIKPGDRLLSV 163
Query: 73 NHVTVVDVPHSAAVEALKRAGNVVTLL 99
+ + ++ H+ A+ LK+ G TLL
Sbjct: 164 DGIRLLGTTHAEAMSILKQCGQEATLL 190
Score = 99.8 bits (249), Expect = 1e-26
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 9 GDSEWEYEEI--RLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVN 66
G ++ + +++ G LG +++GG D D ++ L GG AA +L V
Sbjct: 1 GPGSFKGSTVVELMKKEGTTLGLTVSGGIDK-----DGKPRVSNLRQGGIAARSDQLDVG 55
Query: 67 DVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
D I VN + + H + LK G V L
Sbjct: 56 DYIKAVNGINLAKFRHDEIISLLKNVGERVVLE 88
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 99.0 bits (247), Expect = 3e-27
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 2 SCEKVNGGDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDG 61
S G E +I L +G GLGF+I GG D I+++ ++ GG A G
Sbjct: 3 SGSSGRPGGDAREPRKIILHKGSTGLGFNIVGGEDGE------GIFVSFILAGGPADLSG 56
Query: 62 RLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEEAVAT 115
L+ D I VN V + + H A ALKRAG VT++ + E + E+
Sbjct: 57 ELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESSGP 110
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 98.7 bits (246), Expect = 4e-27
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 17 EIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
+ GLG I GG + +YI ++IPGG DGRL+ D + +N +
Sbjct: 17 RVITVTKETGLGLKILGGINRNE---GPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKES 73
Query: 77 VVDVPHSAAVEALKRAGN 94
++ V A + RA
Sbjct: 74 MIGVSFEEAKSIITRAKL 91
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 98.6 bits (246), Expect = 4e-27
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 14 EYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVN 73
E + + L + GLGFSI +P + I I L+ G A G L D + VN
Sbjct: 15 EVKIVELVKDCKGLGFSILDY-QDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVN 73
Query: 74 HVTVVDVPHSAAVEALKRAGN-VVTLL 99
+ + + AVE LK +V L
Sbjct: 74 EYCLDNTSLAEAVEILKAVPPGLVHLG 100
>2i04_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; PDZ, E6 binding, tumor
suppressor, peptide binding protein; 2.15A {Mus
musculus}
Length = 85
Score = 98.1 bits (245), Expect = 4e-27
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 17 EIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
+L + G GF++ GG + D + I L+ G AA DG+++ DVI VN
Sbjct: 3 HTKLRKSSRGFGFTVVGGDEP-----DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTC 57
Query: 77 VVDVPHSAAVEALKRA--GNVVTLL 99
V+ H+ V+ + G V L
Sbjct: 58 VLGHTHAQVVKIFQSIPIGASVDLE 82
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 99.0 bits (247), Expect = 4e-27
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 10 DSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVI 69
+ I+L++G GLGFSI IG IY+ ++P GAA DGRL+ D +
Sbjct: 26 KKIGKRLNIQLKKGTEGLGFSITSRDV--TIGGSAPIYVKNILPRGAAIQDGRLKAGDRL 83
Query: 70 HQVNHVTVVDVPHSAAVEALKRA--GNVVTLL 99
+VN V +V V L+ V+LL
Sbjct: 84 IEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLL 115
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 98.7 bits (246), Expect = 5e-27
Identities = 18/78 (23%), Positives = 32/78 (41%)
Query: 22 RGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVP 81
G GLG I GG + P + YI K++PGG+A G+L + + N + +
Sbjct: 27 VSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKT 86
Query: 82 HSAAVEALKRAGNVVTLL 99
+ + + +
Sbjct: 87 YEEVQSIISQQSGEAEIC 104
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 98.7 bits (246), Expect = 5e-27
Identities = 38/109 (34%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 4 EKVNGGDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRL 63
E + D E I + RG GLGF+I GG D I+I+ ++ GG A G L
Sbjct: 4 EFLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGEL 57
Query: 64 QVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEEA 112
+ D I VN V + + H A ALK AG VT++ + E + EA
Sbjct: 58 RKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEA 106
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 100 bits (251), Expect = 6e-27
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 2/89 (2%)
Query: 12 EWEYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
E E+ L G G + G I+ + A G LQ+ D +
Sbjct: 4 HTETTEVVLTADPVTGFGIQLQGSVFATETLSS-PPLISYIEADSPAERCGVLQIGDRVM 62
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+N + D A + L+ + +
Sbjct: 63 AINGIPTEDSTFEEANQLLRDSSITSKVT 91
Score = 89.1 bits (221), Expect = 2e-22
Identities = 14/87 (16%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 13 WEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQV 72
+ ++ LG +I+ + + I+ + G A G L++ D + +
Sbjct: 107 GTFHVKLPKKHSVELGITISSPSSRKP---GDPLVISDIKKGSVAHRTGTLELGDKLLAI 163
Query: 73 NHVTVVDVPHSAAVEALKRAGNVVTLL 99
+++ + AV+ L++ ++V L
Sbjct: 164 DNIRLDSCSMEDAVQILQQCEDLVKLK 190
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 97.8 bits (244), Expect = 1e-26
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 4 EKVNGGDSEWEYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGR 62
+ + E L + GLGFS+ G + I++ ++ G A DGR
Sbjct: 10 QLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENR--GELGIFVQEIQEGSVAHRDGR 67
Query: 63 LQVNDVIHQVNHVTV-VDVPHSAAVEALKRAGNVVTLL 99
L+ D I +N + + H A+ L++A + V L+
Sbjct: 68 LKETDQILAINGQALDQTITHQQAISILQKAKDTVQLV 105
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 97.5 bits (243), Expect = 2e-26
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 14 EYEEIRLERGGA-GLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQV 72
+ E I +ER GLGFS+ I++ + PG A D RL+ ND I +
Sbjct: 25 QIEYIDIERPSTGGLGFSVVALRSQNL--GKVDIFVKDVQPGSVADRDQRLKENDQILAI 82
Query: 73 NHVTV-VDVPHSAAVEALKRAGNVVTLL 99
NH + ++ H A+ L++ + L+
Sbjct: 83 NHTPLDQNISHQQAIALLQQTTGSLRLI 110
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 96.0 bits (239), Expect = 6e-26
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 7 NGGDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVN 66
N + + ++ +L + G GF++ GG + D + I L+ G AA DG+++
Sbjct: 11 NPSELKGKFIHTKLRKSSRGFGFTVVGGDEP-----DEFLQIKSLVLDGPAALDGKMETG 65
Query: 67 DVIHQVNHVTVVDVPHSAAVEALKRA--GNVVTLL 99
DVI VN V+ H+ V+ + G V L
Sbjct: 66 DVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLE 100
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 95.6 bits (238), Expect = 9e-26
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 11 SEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
+ + I + GAGLGFS+AGG D + I + ++ P G A+ +G +Q + +
Sbjct: 13 LDGIHVTILHKEEGAGLGFSLAGGADLENKV----ITVHRVFPNGLASQEGTIQKGNEVL 68
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+N ++ H A+ L++A +
Sbjct: 69 SINGKSLKGTTHHDALAILRQAREPRQAV 97
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 95.7 bits (238), Expect = 1e-25
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 12 EWEYEEIRLERG--GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVI 69
E E EE+ L R LG ++ TD+ D IYI+++ P AA DGR++ D I
Sbjct: 17 ELELEEVDLYRMNSQDKLGLTVCYRTDDED---DIGIYISEIDPNSIAAKDGRIREGDRI 73
Query: 70 HQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
Q+N + V + + A+ + N L+
Sbjct: 74 IQINGIEVQNREEAVALLTSEENKNFSLLI 103
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 95.6 bits (238), Expect = 1e-25
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 11 SEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
+E + LE+ AGLGFS+ GG + H D + I ++ G A+ +Q D I
Sbjct: 26 AEATVCTVTLEKMSAGLGFSLEGGKGSLH--GDKPLTINRIFKGAASEQSETVQPGDEIL 83
Query: 71 QVNHVTVVDVPHSAAVEALKRAGN-VVTLL 99
Q+ + + A +K + VT++
Sbjct: 84 QLGGTAMQGLTRFEAWNIIKALPDGPVTIV 113
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 94.0 bits (234), Expect = 2e-25
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 7 NGGDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVN 66
+G E +R + GLGFSI GG+++ IY++ + PG A +G L+V
Sbjct: 3 SGSSGEVRLVSLRRAKAHEGLGFSIRGGSEH-----GVGIYVSLVEPGSLAEKEG-LRVG 56
Query: 67 DVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
D I +VN ++ V H+ AV+ALK + +V +
Sbjct: 57 DQILRVNDKSLARVTHAEAVKALKGSKKLVLSV 89
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 93.3 bits (232), Expect = 4e-25
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 9 GDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDV 68
G S +R+++ A LG +I GG + I + GG+A + G+L+V V
Sbjct: 1 GSSGSSGTLVRVKKSAATLGIAIEGGANTRQ----PLPRIVTIQRGGSAHNCGQLKVGHV 56
Query: 69 IHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
I +VN +T+ H A + A
Sbjct: 57 ILEVNGLTLRGKEHREAARIIAEAFKTKDR 86
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A*
1mc7_A
Length = 108
Score = 93.3 bits (232), Expect = 4e-25
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 11 SEWEYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVI 69
S + L LG SI G ++ D IYI ++ GGA A+DGR++ D++
Sbjct: 2 SHMNIITVTLNMEKYNFLGISIVGQSNERG---DGGIYIGSIMKGGAVAADGRIEPGDML 58
Query: 70 HQVNHVTVVDVPHSAAVEALKRAGN---VVTLL 99
QVN + ++ + AV L+ + + L
Sbjct: 59 LQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLT 91
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 93.8 bits (233), Expect = 6e-25
Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 38/162 (23%)
Query: 9 GDSEWEYE--EIRL-ERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQV 65
G E +RL +R GLGF + P + I+ LI GGAA G +Q
Sbjct: 1 GSHMIEPNVISVRLFKRKVGGLGFLVKERVSKP------PVIISDLIRGGAAEQSGLIQA 54
Query: 66 NDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEEAVATLKATHERVNL 125
D+I VN L +++++ A+ L+ ++
Sbjct: 55 GDIILAVNDR---------------------------PLVDLSYDSALEVLRGIASETHV 87
Query: 126 LIGKFEPALRNSTNHLAHPSDIPSSPNPSLTKEPMPPPPQAL 167
++ P T HL +P +P+ PP +A+
Sbjct: 88 VLILRGP--EGFTTHLETTFTGDGTPKTIRVTQPLGPPTKAV 127
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 92.9 bits (231), Expect = 8e-25
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 7 NGGDSEWEYEEIRLER--GGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQ 64
+ +++RL R L ++ GG D+P + ++ + GGAA G +
Sbjct: 8 MFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSP----VGKVVVSAVYEGGAAERHGGVV 63
Query: 65 VNDVIHQVNHVTVVDVPHSAAVEALKRA----GNVVTLL 99
D I +N V D + A AL++A G+ + L+
Sbjct: 64 KGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLV 102
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 91.3 bits (227), Expect = 3e-24
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 18 IRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
+ L+ GLG SI GG ++ I I+++ PG A G L V D I VN V +
Sbjct: 14 LLLKEDHEGLGISITGGKEH-----GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNL 68
Query: 78 VDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEE 111
D H AV L + + H
Sbjct: 69 RDTKHKEAVTILSQQRGEIEFEVVYVALEHHHHH 102
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 91.0 bits (226), Expect = 4e-24
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 16 EEIRLERG-GAGLGFSIAGGTDNPHIG----DDTSIYITKLIPGGAAASDGRLQVNDVIH 70
+ + R LG SI GG + I+I +++ A L+ D I
Sbjct: 17 RIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKIL 76
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+V+ V + + HS AVEA+K AGN V +
Sbjct: 77 EVSGVDLQNASHSEAVEAIKNAGNPVVFI 105
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide;
peptide binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 90.1 bits (224), Expect = 7e-24
Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 9/87 (10%)
Query: 14 EYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQV 72
E + L + G LG S++ + I LI G D +LQ D+I +
Sbjct: 2 EKFNVDLMKKAGKELGLSLSPN--------EIGCTIADLIQGQYPEIDSKLQRGDIITKF 53
Query: 73 NHVTVVDVPHSAAVEALKRAGNVVTLL 99
N + +P K A V++
Sbjct: 54 NGDALEGLPFQVCYALFKGANGKVSME 80
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L
homolog; PDZ domain, cellular signaling, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 90.7 bits (225), Expect = 7e-24
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 2/93 (2%)
Query: 7 NGGDSEWEYEEIRLER-GGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQV 65
G E E+ L G G + G + I+ + A G LQ+
Sbjct: 8 AGQVVHTETTEVVLTADPVTGFGIQLQGSVFATE-TLSSPPLISYIEADSPAERCGVLQI 66
Query: 66 NDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
D + +N + D A + L+ + +
Sbjct: 67 GDRVMAINGIPTEDSTFEEANQLLRDSSITSKV 99
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 89.3 bits (222), Expect = 2e-23
Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 9 GDSEWEYEEIRLE-RGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVND 67
G S ++ + ++ +GGA GF++ GG ++ + ++K+ GG AA +++ D
Sbjct: 4 GSSGGSFQYVPVQLQGGAPWGFTLKGGLEHCE-----PLTVSKIEDGGKAALSQKMRTGD 58
Query: 68 VIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+ +N + A+ +K + ++ L+
Sbjct: 59 ELVNINGTP-LYGSRQEALILIKGSFRILKLI 89
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1qav_B
Length = 112
Score = 88.7 bits (220), Expect = 3e-23
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 17 EIRL-ERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHV 75
+RL +R GLGF + P + I+ LI GGAA G +Q D+I VN
Sbjct: 4 SVRLFKRKVGGLGFLVKERVSKP------PVIISDLIRGGAAEQSGLIQAGDIILAVNDR 57
Query: 76 TVVDVPHSAAVEALKRAGNVVTLL 99
+VD+ + +A+E L+ + ++
Sbjct: 58 PLVDLSYDSALEVLRGIASETHVV 81
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 88.8 bits (220), Expect = 4e-23
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 12 EWEYEEIRLERGGA--GLGFSIAGGTDNPHIG----DDTSIYITKLIPGGAAASDGRLQV 65
+ +RL + G LGF I G+ I+I++L+PGG A S G L V
Sbjct: 27 PETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAV 86
Query: 66 NDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
ND + +VN + V + + + +
Sbjct: 87 NDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIIT 120
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 88.3 bits (219), Expect = 6e-23
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 14 EYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQV 72
++ L++ +G SI GG +YI ++ AA DG + D I V
Sbjct: 19 VPGKVTLQKDAQNLIGISIGGGAQY-----CPCLYIVQVFDNTPAALDGTVAAGDEITGV 73
Query: 73 NHVTVVDVPHSAAVEALKRAGNVVTLL 99
N ++ + ++ VT+
Sbjct: 74 NGRSIKGKTKVEVAKMIQEVKGEVTIH 100
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain,
scaffolding protein, membrane, sensory transduction,
vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A
2qku_A
Length = 96
Score = 87.0 bits (216), Expect = 8e-23
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 11 SEWEYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVI 69
+ E + L + G LG S++ + I LI G D +LQ D+I
Sbjct: 5 NSLEKFNVDLMKKAGKELGLSLSPN--------EIGCTIADLIQGQYPEIDSKLQRGDII 56
Query: 70 HQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+ N + +P + K A V++
Sbjct: 57 TKFNGDALEGLPFQVSYALFKGANGKVSME 86
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 87.5 bits (217), Expect = 9e-23
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 14 EYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVN 73
+ + L+ GLG SI GG ++ I I+++ PG A G L V D I VN
Sbjct: 28 IRKVLLLKEDHEGLGISITGGKEH-----GVPILISEIHPGQPADRCGGLHVGDAILAVN 82
Query: 74 HVTVVDVPHSAAVEALKRAGNVVTLL 99
V + D H AV L + +
Sbjct: 83 GVNLRDTKHKEAVTILSQQRGEIEFE 108
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 87.6 bits (217), Expect = 1e-22
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 10 DSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVI 69
S + + +L G GLG + I + + I+ LI GAAASDG LQ DV+
Sbjct: 23 SSLNKVIQTKLTVGNLGLGLVV--------IQNGPYLQISHLINKGAAASDGILQPGDVL 74
Query: 70 HQVNHVTVVDVPHSAAVEALK--RAGNVVTLL 99
V H V+ ++ L+ G V+ +
Sbjct: 75 ISVGHANVLGYTLREFLKLLQNITIGTVLQIK 106
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 85.6 bits (212), Expect = 6e-22
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 17 EIRLERGGAG-LGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHV 75
++ L++ +G SI GG +YI ++ AA DG + D I VN
Sbjct: 27 KVTLQKDAQNLIGISIGGGAQY-----CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR 81
Query: 76 TVVDVPHSAAVEALKRAGNVVTL 98
++ + ++ VT+
Sbjct: 82 SIKGKTKVEVAKMIQEVKGEVTI 104
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 84.3 bits (209), Expect = 7e-22
Identities = 17/95 (17%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 17 EIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
+ L + A + + G+ I++ ++ G A DG L D+I ++N
Sbjct: 3 GVLLMKSRANEEYGLRLGSQ---------IFVKEMTRTGLATKDGNLHEGDIILKINGTV 53
Query: 77 VVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEE 111
++ + A + ++++ + L+ ++LE+ H
Sbjct: 54 TENMSLTDARKLIEKSRGKLQLVVLRDLEHHHHHH 88
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 83.1 bits (206), Expect = 2e-21
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 9 GDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDV 68
G S + + G A GF I+GG D I +TK+ G A + L+ D+
Sbjct: 1 GSSGSSGLTVDV-AGPAPWGFRISGGRDFHT-----PIIVTKVTERGKAEAAD-LRPGDI 53
Query: 69 IHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
I +N + ++ H+ A ++++ + + L
Sbjct: 54 IVAINGQSAENMLHAEAQSKIRQSASPLRLQ 84
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 82.4 bits (204), Expect = 5e-21
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 18 IRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
IRL + LG +I +I + +++ GGAA G + V D + +VN + V
Sbjct: 8 IRLVKNREPLGATIKKDEQTG------AIIVARIMRGGAADRSGLIHVGDELREVNGIPV 61
Query: 78 VDVPHSAAVEALKRAGNVVTL 98
D ++ L ++ +T
Sbjct: 62 EDKRPEEIIQILAQSQGAITF 82
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium
channel 3 chimera; PDZ domain, PDZ binding, GIRK3
regulation, early endosomes; 1.68A {Rattus norvegicus}
PDB: 3qdo_A 3qgl_A
Length = 107
Score = 82.4 bits (204), Expect = 7e-21
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 18 IRLERGGAGLGFSIAGGTDNPHIGDDTS-------IYITKLIPGGAAASDGRLQVNDVIH 70
+R+ + +G GF++ G + +++ ++PGGAA G ++ D I
Sbjct: 10 VRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRIL 68
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+VN V V H V+ ++ + L
Sbjct: 69 EVNGVNVEGATHKQVVDLIRAGEKELILT 97
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 82.9 bits (205), Expect = 7e-21
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 17 EIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHV 75
+ + + G+ LG S+ + + I I ++ P G L D I ++
Sbjct: 18 MVEIVKTPGSALGISLTTTSLRN----KSVITIDRIKPASVVDRSGALHPGDHILSIDGT 73
Query: 76 TVVDVPHSAAVEALKRAGNVVTL 98
++ A + L V L
Sbjct: 74 SMEHCSLLEATKLLASISEKVRL 96
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein;
1.70A {Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 81.5 bits (202), Expect = 8e-21
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 22 RGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVP 81
G A GF I GG D T I +TK+ G A D L+ D+I +N + +
Sbjct: 9 AGPAPWGFRITGGRDF-----HTPIMVTKVAERGKAK-DADLRPGDIIVAINGESAEGML 62
Query: 82 HSAAVEALKRAGNVVTLL 99
H+ A ++++ + + L
Sbjct: 63 HAEAQSKIRQSPSPLRLQ 80
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 81.2 bits (201), Expect = 1e-20
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 10 DSEWEYEEIRLER--GGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVND 67
+ E ++ L + G GFS+A G +Y+ + P G G L+ D
Sbjct: 2 PTPVELHKVTLYKDSGMEDFGFSVADGLLEK------GVYVKNIRPAGPGDLGG-LKPYD 54
Query: 68 VIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+ QVNHV D V + +GN + L+
Sbjct: 55 RLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV 86
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 80.8 bits (200), Expect = 2e-20
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 14 EYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVN 73
+ ++ L G A GF + GG D + + I++L PGG AA G + V D + ++
Sbjct: 3 DSFKVVL-EGPAPWGFRLQGGKDF-----NVPLSISRLTPGGKAAQAG-VAVGDWVLSID 55
Query: 74 HVTVVDVPHSAAVEALKRAGNVVTLL 99
+ H A ++ G ++L
Sbjct: 56 GENAGSLTHIEAQNKIRACGERLSLG 81
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma
homolog, phosphorylation, signaling PR LIM domain, PDZ
domain; 1.5A {Homo sapiens}
Length = 88
Score = 80.4 bits (199), Expect = 2e-20
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 22 RGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVP 81
G A GF + GG D + + I+ L GG AA +++ DV+ ++ + +
Sbjct: 10 VGPAPWGFRLQGGKDF-----NMPLTISSLKDGGKAA-QANVRIGDVVLSIDGINAQGMT 63
Query: 82 HSAAVEALKRAGNVVTLL 99
H A +K + +
Sbjct: 64 HLEAQNKIKGCTGSLNMT 81
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 83.0 bits (205), Expect = 5e-20
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 14 EYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVN 73
+ I L+ +G + GG +N T IT + P G A+D RL++ D I +N
Sbjct: 18 KKILIELKVEKKPMGVIVCGGKNNHV---TTGCVITHVYPEGQVAADKRLKIFDHICDIN 74
Query: 74 HVTV--VDVPHSAAVEALKRAGNVVTLL 99
+ + + L
Sbjct: 75 GTPIHVGSMTTLKVHQLFHTTYEKAVTL 102
Score = 79.9 bits (197), Expect = 7e-19
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 12 EWEYEEIRLER-GGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
E E + L + G LG S+ ++ I LI G D +LQ D+I
Sbjct: 111 ELEKFNVDLMKKAGKELGLSL--------SPNEIGCTIADLIQGQYPEIDSKLQRGDIIT 162
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+ N + +P K A V++
Sbjct: 163 KFNGDALEGLPFQVCYALFKGANGKVSME 191
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 80.1 bits (198), Expect = 5e-20
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 7 NGGDSEWEYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQV 65
+G +R+E+ LGFS+ GG+++ I+++K+ G +A G L V
Sbjct: 3 SGSSGSDIIHSVRVEKSPAGRLGFSVRGGSEH-----GLGIFVSKVEEGSSAERAG-LCV 56
Query: 66 NDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
D I +VN +++ +AV+ L + + ++
Sbjct: 57 GDKITEVNGLSLESTTMGSAVKVLTSSSRLHMMV 90
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 117
Score = 80.2 bits (198), Expect = 7e-20
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 14 EYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVN 73
E +++++G LG SI G IY++K+ G A G L+ D + + N
Sbjct: 19 EPRHVKVQKGSEPLGISIVSGEKGG-------IYVSKVTVGSIAHQAG-LEYGDQLLEFN 70
Query: 74 HVTVVDVPHSAAVEALKRAGNVVTLL 99
+ + A + + + +T+L
Sbjct: 71 GINLRSATEQQARLIIGQQCDTITIL 96
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 80.2 bits (198), Expect = 9e-20
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 14 EYEEIRLER-GGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQV 72
++ + R GA LG + GG +ITK+ G A + G L+ D + +
Sbjct: 36 RLKDGSVPRDSGAMLGLKVVGGKMTES--GRLCAFITKVKKGSLADTVGHLRPGDEVLEW 93
Query: 73 NHVTVVDVPHSAAVEALKRAGNVVTL 98
N + + + +
Sbjct: 94 NGRLLQGATFEEVYNIILESKPEPQV 119
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 78.5 bits (194), Expect = 1e-19
Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
Query: 17 EIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
+ R G +A I++ ++ AA DG +Q DV+ ++N
Sbjct: 5 TLVKSRKNEEYGLRLASH-----------IFVKEISQDSLAARDGNIQEGDVVLKINGTV 53
Query: 77 VVDVPHSAAVEALKRAGNVVTLL 99
++ + A ++R+ + ++
Sbjct: 54 TENMSLTDAKTLIERSKGKLKMV 76
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 78.6 bits (194), Expect = 2e-19
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 9 GDSEWEYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVND 67
G S E+ LE+ G GLG ++ + + I L+ GG A G L + D
Sbjct: 4 GSSGDNCREVHLEKRRGEGLGVALVESGWGSLLP---TAVIANLLHGGPAERSGALSIGD 60
Query: 68 VIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
+ +N ++V +P +A A++ + ++
Sbjct: 61 RLTAINGTSLVGLPLAACQAAVRETKSQTSV 91
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A
2ocs_A
Length = 91
Score = 77.7 bits (192), Expect = 3e-19
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 18 IRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
LE+G G GF + G YI + PG A G L D + +VN V
Sbjct: 7 CCLEKGPNGYGFHLHGEKGKL------GQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENV 59
Query: 78 VDVPHSAAVEALKRAGNVVTLL 99
H V ++ A N V LL
Sbjct: 60 EKETHQQVVSRIRAALNAVRLL 81
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 77.8 bits (192), Expect = 3e-19
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 7 NGGDSEWEYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQV 65
N +++ + L++ GA LGF+I GG + I+I+K+IP A G LQ
Sbjct: 8 NNELTQFLPRIVTLKKPPGAQLGFNIRGGKAS-----QLGIFISKVIPDSDAHRAG-LQE 61
Query: 66 NDVIHQVNHVTVVDVPHSAAVEALKRAGNVV 96
D + VN V D+ HS AVE LK A +
Sbjct: 62 GDQVLAVNDVDFQDIEHSKAVEILKTAREIS 92
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 80.2 bits (197), Expect = 6e-19
Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 7/169 (4%)
Query: 18 IRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
+++G +G GF++ P +I + P A + G L+ D I +VN V +
Sbjct: 13 CTMKKGPSGYGFNLHSDKSKP------GQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCM 65
Query: 78 VDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEEAVATLKATHERVNLLIGKFEPALRNS 137
H V A++ G+ LL + ++ H L + ++
Sbjct: 66 EGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKE 125
Query: 138 TNHLAHPSDIPSSPNPSLTKEPMPPPPQALETSVHSLHSSTTALHPMPP 186
+ A SP P+L + + L + +TA
Sbjct: 126 NSREALAEAALESPRPALVRSASSDTSEELNSQDSPPKQDSTAPSSTSS 174
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 76.5 bits (189), Expect = 1e-18
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 22 RGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVP 81
RG + GF + GG D + I+++ G AA L D+I +N + +
Sbjct: 15 RGPSPWGFRLVGGRDF-----SAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMT 68
Query: 82 HSAAVEALKRAGNVVTLL 99
H A +K + +TL
Sbjct: 69 HLEAQNRIKGCHDHLTLS 86
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 76.1 bits (188), Expect = 1e-18
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 22 RGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVP 81
G GF + GG D + + I+++ PG AA +L D++ ++ V +
Sbjct: 8 TGPGPWGFRLQGGKDF-----NMPLTISRITPGSKAA-QSQLSQGDLVVAIDGVNTDTMT 61
Query: 82 HSAAVEALKRAGNVVTLL 99
H A +K A ++L
Sbjct: 62 HLEAQNKIKSASYNLSLT 79
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 77.2 bits (190), Expect = 1e-18
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 14 EYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQV 72
+ +++ L G G LG +I GG + IYIT + PG A G L+V D I +V
Sbjct: 20 DEKKVNLVLGDGRSLGLTIRGGAEY-----GLGIYITGVDPGSEAEGSG-LKVGDQILEV 73
Query: 73 NHVTVVDVPHSAAVEALKRAGNVVTLL 99
N + +++ H AV LK + +++ +
Sbjct: 74 NGRSFLNILHDEAVRLLKSSRHLILTV 100
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 76.3 bits (188), Expect = 2e-18
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 11 SEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
S + L G A GF + GG D + + I+ L GG A+ +++ DV+
Sbjct: 2 SSGSSGSVSL-VGPAPWGFRLQGGKDF-----NMPLTISSLKDGGKAS-QAHVRIGDVVL 54
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
++ ++ + H A +K + +
Sbjct: 55 SIDGISAQGMTHLEAQNKIKACTGSLNMT 83
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 75.8 bits (187), Expect = 2e-18
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 18 IRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
L +G G GF++ P YI + PG AA G L+ D + +VN V
Sbjct: 8 CHLRKGPQGYGFNLHSDKSRPGQ------YIRSVDPGSPAARSG-LRAQDRLIEVNGQNV 60
Query: 78 VDVPHSAAVEALKRAGNVVTLL 99
+ H+ V ++K + LL
Sbjct: 61 EGLRHAEVVASIKAREDEARLL 82
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell
junction, membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 75.5 bits (186), Expect = 2e-18
Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 17 EIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
+ G +A I++ ++ AA DG +Q DV+ ++N
Sbjct: 7 TLVKSAKNEEYGLRLASH-----------IFVKEISQDSLAARDGNIQEGDVVLKINGTV 55
Query: 77 VVDVPHSAAVEALKRAGNVVTLL 99
++ + A ++R+ + ++
Sbjct: 56 TENMSLTDAKTLIERSKGKLKMV 78
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 76.0 bits (187), Expect = 2e-18
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 22 RGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVP 81
G GLG SI+ G I+I+ + PG +A G L++ D I +VN V ++
Sbjct: 24 VGSRGLGCSISSGPIQ-----KPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLD 77
Query: 82 HSAAVEALKRAGNVVTLL 99
H AV LK + ++ +
Sbjct: 78 HKEAVNVLKSSRSLTISI 95
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 75.5 bits (186), Expect = 2e-18
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 18 IRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
+++G +G GF++ P +I + P A + G L+ D I +VN V +
Sbjct: 13 CTMKKGPSGYGFNLHSDKSKPGQ------FIRSVDPDSPAEASG-LRAQDRIVEVNGVCM 65
Query: 78 VDVPHSAAVEALKRAGNVVTLL 99
H V A++ G+ LL
Sbjct: 66 EGKQHGDVVSAIRAGGDETKLL 87
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 76.2 bits (187), Expect = 4e-18
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 12 EWEYEEIRLERG----GAGLGFSIAGGTDNPHIGD-------DTSIYITKLIPGGAAASD 60
+ + + + + LGFSI GG D + D IY+T++ GG A
Sbjct: 21 QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIA 80
Query: 61 GRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
G LQ+ D I QVN + V H A + L + V L
Sbjct: 81 G-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRL 118
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 74.7 bits (184), Expect = 4e-18
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 22 RGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVP 81
+G GF + GG D + + I+++ PG AA L + DVI ++ ++
Sbjct: 10 QGPGPWGFRLVGGKDF-----EQPLAISRVTPGSKAAL-ANLCIGDVITAIDGENTSNMT 63
Query: 82 HSAAVEALKRAGNVVTLL 99
H A +K + +TL
Sbjct: 64 HLEAQNRIKGCTDNLTLT 81
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 96
Score = 75.1 bits (185), Expect = 4e-18
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 7 NGGDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVN 66
+G +I + GF I+ + + + GG+A G+L
Sbjct: 3 SGSSGVRHTVKIDKDTLLQDYGFHISESLP---------LTVVAVTAGGSA--HGKLFPG 51
Query: 67 DVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
D I Q+N+ D+ AV+ L+ A + +++
Sbjct: 52 DQILQMNNEPAEDLSWERAVDILREAEDSLSIT 84
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 79.0 bits (194), Expect = 5e-18
Identities = 47/184 (25%), Positives = 63/184 (34%), Gaps = 31/184 (16%)
Query: 10 DSEWEYEEIRLERGGA-GLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDV 68
+ + + + A GLG SI GG +N I I+K+ G AA L V D
Sbjct: 73 ALLLQRRRVTVRKADAGGLGISIKGGRENKM-----PILISKIFKGLAADQTEALFVGDA 127
Query: 69 IHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEEAVATLKATHERVNLLIG 128
I VN + H AV+ALK+ G V L + E
Sbjct: 128 ILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKE----------------------- 164
Query: 129 KFEPALRNSTNHLAHPSD-IPSSPNPSLTKEPMPPPPQALETSVHSLHSSTTALHPMPPL 187
P +NS + D P+SP P P P E SL + + P
Sbjct: 165 -VSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLSEAKHVSLKMAYVSRRCTPTD 223
Query: 188 PHPE 191
P P
Sbjct: 224 PEPR 227
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 74.7 bits (184), Expect = 5e-18
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 18 IRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
+ LE+G G GF + + ++ ++ PG A G +Q D + V +V
Sbjct: 7 LHLEKGPQGFGFLLREE---KGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESV 62
Query: 78 VDVPHSAAVEALKRAGNVVTLL 99
+ H V ++ G+ V+L
Sbjct: 63 EGLGHEETVSRIQGQGSCVSLT 84
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 76.9 bits (188), Expect = 8e-18
Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 14/140 (10%)
Query: 25 AGLGFSIAGGTD---NPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVP 81
LGFSI+GG NP DD I++T++ P G A LQ D I Q N + +++
Sbjct: 2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIE 59
Query: 82 HSAAVEALKRAGNVVTLLGEKNLENVTHEEAVATLKATHERVNLLIGKFEPALRNSTNHL 141
H AV LK N V L+ + + N +E ++ + + +T
Sbjct: 60 HGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAAT--- 116
Query: 142 AHPSDIPSSPNPSLTKEPMP 161
P+S S
Sbjct: 117 ------PTSLLISWDASYYG 130
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics, KIAA0705 protein; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 96
Score = 74.3 bits (183), Expect = 8e-18
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 8 GGDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVND 67
G + E + + +G G GF+IA + G L D
Sbjct: 4 GSSGQAELMTLTIVKGAQGFGFTIADSPTGQRVKQILD-------IQGCP----GLCEGD 52
Query: 68 VIHQVNHVTVVDVPHSAAVEALK--RAGNVVTLL 99
+I ++N V ++ H+ V+ LK G+ +L+
Sbjct: 53 LIVEINQQNVQNLSHTEVVDILKDCPIGSETSLI 86
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A
{Homo sapiens}
Length = 95
Score = 74.0 bits (182), Expect = 9e-18
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 9/87 (10%)
Query: 14 EYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVN 73
+E+ + + LG +I +I ++ GG S + V D I +N
Sbjct: 5 IEKEVNVYKSEDSLGLTITDNGVGY-------AFIKRIKDGGVIDSVKTICVGDHIESIN 57
Query: 74 HVTVVDVPHSAAVEALK--RAGNVVTL 98
+V H + LK + + T+
Sbjct: 58 GENIVGWRHYDVAKKLKELKKEELFTM 84
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 74.3 bits (183), Expect = 9e-18
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 22 RGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVP 81
G A GF ++GG D + + IT++ PG AA L DVI ++ +
Sbjct: 12 PGPAPWGFRLSGGIDF-----NQPLVITRITPGSKAA-AANLCPGDVILAIDGFGTESMT 65
Query: 82 HSAAVEALKRAGNVVTLL 99
H+ A + +K A + L
Sbjct: 66 HADAQDRIKAASYQLCLK 83
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 72.7 bits (179), Expect = 3e-17
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 11 SEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
S + + +++G G GF + G + I + PG A + G L+ ND++
Sbjct: 2 SPHQPRVVVIKKGSNGYGFYLRAGPEQK------GQIIKDIEPGSPAEAAG-LKNNDLVV 54
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
VN +V + H VE +++ G+ TLL
Sbjct: 55 AVNGKSVEALDHDGVVEMIRKGGDQTTLL 83
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 72.8 bits (179), Expect = 3e-17
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 11 SEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIH 70
S + L + G GFS+ +Y+T + P G A G + +D +
Sbjct: 5 SSGQPRLCYLVKEGGSYGFSLKTVQGKK------GVYMTDITPQGVAMRAG-VLADDHLI 57
Query: 71 QVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+VN V D H VE +K++G+ V L
Sbjct: 58 EVNGENVEDASHEEVVEKVKKSGSRVMFL 86
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens}
PDB: 3nfl_A 2vph_A
Length = 107
Score = 72.9 bits (179), Expect = 3e-17
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 7 NGGDSEWEYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAA-SDGRLQ 64
NGG IR++ GF++ GG D + ++++ PG A RL
Sbjct: 10 NGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQ-----KMPVIVSRVAPGTPADLCVPRLN 64
Query: 65 VNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
D + +N + + H V +K + +
Sbjct: 65 EGDQVVLINGRDIAEHTHDQVVLFIKASCERHSG 98
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 75.0 bits (184), Expect = 4e-17
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 14 EYEEIRLER-GGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQV 72
+ +E+RL+R GLG S+ GG + ++I+ LI GG A S G LQV D I ++
Sbjct: 84 KLKEVRLDRLHPEGLGLSVRGGLEF-----GCGLFISHLIKGGQADSVG-LQVGDEIVRI 137
Query: 73 NHVTVVDVPHSAAVEALKRAGNVVTLL 99
N ++ H + ++ V +
Sbjct: 138 NGYSISSCTHEEVINLIRTEKTVSIKV 164
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 72.5 bits (178), Expect = 5e-17
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 17 EIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHV 75
+R+E+ LG ++ D S+ I++++ GGAA G L D + ++N +
Sbjct: 28 IVRIEKARDIPLGATVRNEMD--------SVIISRIVKGGAAEKSGLLHEGDEVLEINGI 79
Query: 76 TVVDVPHSAAVEALKRAGNVVTLL 99
+ + + L +T +
Sbjct: 80 EIRGKDVNEVFDLLSDMHGTLTFV 103
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 72.1 bits (177), Expect = 5e-17
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 8 GGDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVND 67
G E +I + RG G GF+I D+P + + GG A G LQ D
Sbjct: 9 GDPENGEKLQITIRRGKDGFGFTICC--DSPV-------RVQAVDSGGPAERAG-LQQLD 58
Query: 68 VIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+ Q+N V ++ + + LL
Sbjct: 59 TVLQLNERPVEHWKCVELAHEIRSCPSEIILL 90
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 71.9 bits (177), Expect = 6e-17
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 18 IRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
RL +G G GF + P +I ++ GG A G L+ DVI +VN V V
Sbjct: 7 CRLAKGENGYGFHLNAIRGLPGS------FIKEVQKGGPADLAG-LEDEDVIIEVNGVNV 59
Query: 78 VDVPHSAAVEALKRAGNVVTLL 99
+D P+ V+ ++ +G VTLL
Sbjct: 60 LDEPYEKVVDRIQSSGKNVTLL 81
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 71.5 bits (176), Expect = 6e-17
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 18 IRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
+ + RG AG GF+++G P ++ ++ G A G L+ D I VN + V
Sbjct: 6 VEVARGRAGYGFTLSG--QAP-------CVLSCVMRGSPADFVG-LRAGDQILAVNEINV 55
Query: 78 VDVPHSAAVEALKRAGNVVTLL 99
H V+ + + V+ ++
Sbjct: 56 KKASHEDVVKLIGKCSGVLHMV 77
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 72.6 bits (178), Expect = 7e-17
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 7 NGGDSEWEYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAA-SDGRLQ 64
NGG IR++ GF++ GG D + ++++ PG A RL
Sbjct: 8 NGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQ-----KMPVIVSRVAPGTPADLCVPRLN 62
Query: 65 VNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
D + +N + + H V +K + +
Sbjct: 63 EGDQVVLINGRDIAEHTHDQVVLFIKASCERHSG 96
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 71.2 bits (175), Expect = 7e-17
Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 17 EIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHV 75
++ ++ +G ++ N + +++ GG G L V D I ++N +
Sbjct: 4 LVQFQKNTDEPMGITLKMNELNH-------CIVARIMHGGMIHRQGTLHVGDEIREINGI 56
Query: 76 TVVDVPHSAAVEALKRAGNVVTL 98
+V + + L+ +T
Sbjct: 57 SVANQTVEQLQKMLREMRGSITF 79
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 71.6 bits (176), Expect = 8e-17
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 17 EIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHV 75
I+ E+ +G + + +++ GG G L V D I ++N
Sbjct: 15 LIQFEKVTEEPMGICLKLNEKQS-------CTVARILHGGMIHRQGSLHVGDEILEINGT 67
Query: 76 TVVDVPHSAAVEALKRAGNVVTL 98
V + +A+K +++L
Sbjct: 68 NVTNHSVDQLQKAMKETKGMISL 90
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 72.2 bits (177), Expect = 1e-16
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
Query: 10 DSEWEYEEIRL--ERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVND 67
++L R G +G +AGG D I++ ++ AA +G L+ D
Sbjct: 22 GHMILRPSMKLVKFRKGDSVGLRLAGGNDVG-------IFVAGVLEDSPAAKEG-LEEGD 73
Query: 68 VIHQVNHVTVVDVPHSAAVEALKRA--GNVVTLLGEKNLE 105
I +VN+V ++ AV L G VT+L +K +
Sbjct: 74 QILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKD 113
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ
domain, protein, acetylation, cell projection, disease
mutation, membrane; NMR {Homo sapiens}
Length = 128
Score = 72.2 bits (177), Expect = 1e-16
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 18 IRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
+++G +G GF++ P +I + P A + G L+ D I +VN V +
Sbjct: 13 CTMKKGPSGYGFNLHSDKSKPGQ------FIRSVDPDSPAEASG-LRAQDRIVEVNGVCM 65
Query: 78 VDVPHSAAVEALKRAGNVVTLL 99
H V A++ G+ LL
Sbjct: 66 EGKQHGDVVSAIRAGGDETKLL 87
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; structural genomi consortium, SGC,
ATP-binding, cell junction; 1.60A {Homo sapiens}
Length = 88
Score = 70.4 bits (173), Expect = 2e-16
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 13 WEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQV 72
E + + +G G GF+IA + +++ + L+ D+I +V
Sbjct: 2 MELITVHIVKGPMGFGFTIADSPGGGGQ------RVKQIVD---SPRSRGLKEGDLIVEV 52
Query: 73 NHVTVVDVPHSAAVEALKR--AGNVVTLL 99
N V + H+ V+ L G+ VTLL
Sbjct: 53 NKKNVQALTHNQVVDMLVESPKGSEVTLL 81
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 69.7 bits (171), Expect = 3e-16
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 14 EYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVN 73
Y +I + RG G GF+I D+ + + + GG A G LQ D + Q+N
Sbjct: 3 RYRQITIPRGKDGFGFTICC---------DSPVRVQAVDSGGPAERAG-LQQLDTVLQLN 52
Query: 74 HVTVVDVPHSAAVEALKRAGNVVTLL 99
V ++ + + LL
Sbjct: 53 ERPVEHWKCVELAHEIRSCPSEIILL 78
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 68.9 bits (169), Expect = 1e-15
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 18 IRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
+ +++G G GF + G + I + PG A + G L+ ND++ VN +V
Sbjct: 10 VVIKKGSNGYGFYLRAGPEQK------GQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSV 62
Query: 78 VDVPHSAAVEALKRAGNVVTLL 99
+ H VE +++ G+ TLL
Sbjct: 63 EALDHDGVVEMIRKGGDQTTLL 84
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 68.6 bits (168), Expect = 1e-15
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 18 IRLERGGAGLGFSIAGGTDNPHIGDDTS--IYITKLIPGGAAASDGRLQVNDVIHQVNHV 75
I + G GFS+ D + + + G A G L+ D+I +N
Sbjct: 6 IVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGE 64
Query: 76 TVVDVPHSAAVEALKRAGNVVTLL 99
+V+ + H VE L ++GN ++L
Sbjct: 65 SVLGLVHMDVVELLLKSGNKISLR 88
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 67.8 bits (166), Expect = 2e-15
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 14/91 (15%)
Query: 14 EYEEIRL-----ERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDV 68
++ ++R+ GF+I I++ + G A +LQV+D
Sbjct: 1 QFSDMRISINQTPGKSLDFGFTIKWDIP--------GIFVASVEAGSPAE-FSQLQVDDE 51
Query: 69 IHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
I +N+ EA+ +A L+
Sbjct: 52 IIAINNTKFSYNDSKEWEEAMAKAQETGHLV 82
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding;
1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 66.6 bits (163), Expect = 6e-15
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 18 IRLERG-GAGLGFSIAGGTDNPHIGD--DTSIYITKLIPGGAAASDGRLQVNDVIHQVNH 74
+ LE+G GF I + + ++ ++ A G L D I VN
Sbjct: 8 LTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNG 66
Query: 75 VTVVDVPHSAAVEALKRAGNVVTLL 99
+ V + H V+ +K +GNV+ L
Sbjct: 67 LNVEGIRHREIVDIIKASGNVLRLE 91
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 66.7 bits (163), Expect = 8e-15
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 17 EIRLER-GGAGLGFSIAGGTDNPHIGDDTS--IYITKLIPGGAAASDGRLQVNDVIHQVN 73
+ +E+ GF I + I K+ A G LQ DV+ +N
Sbjct: 18 LVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANIN 76
Query: 74 HVTVVDVPHSAAVEALKRAGNVVTLL 99
V+ + V+ ++ +GN++T+
Sbjct: 77 GVSTEGFTYKQVVDLIRSSGNLLTIE 102
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 70.8 bits (172), Expect = 9e-15
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 1 MSCEKVNGGDSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASD 60
+ + ++ +SE E + G LG + ++ + ++ GG AA
Sbjct: 192 YNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGSI---LPTVILANMMNGGPAARS 248
Query: 61 GRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
G+L + D I +N ++V +P + +K N +
Sbjct: 249 GKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQV 286
Score = 67.3 bits (163), Expect = 2e-13
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 13/89 (14%)
Query: 10 DSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVI 69
I+ LGFS+ G I L+ GG A G ++V I
Sbjct: 293 CPPVTTVLIKRPDLKYQLGFSVQNG------------IICSLMRGGIAERGG-VRVGHRI 339
Query: 70 HQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
++N +VV H V+AL + + +
Sbjct: 340 IEINGQSVVATAHEKIVQALSNSVGEIHM 368
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 67.2 bits (164), Expect = 2e-14
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 17 EIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHV 75
E+ L + +G + D I++ + A+ G L+ D + Q+N
Sbjct: 7 EVILCKDQDGKIGLRLKSI--------DNGIFVQLVQANSPASLVG-LRFGDQVLQINGE 57
Query: 76 TVVDVPHSAAVEALKRA-GNVVTLL 99
A + LK+A G +T+
Sbjct: 58 NCAGWSSDKAHKVLKQAFGEKITMT 82
Score = 46.0 bits (109), Expect = 1e-06
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 10 DSEWEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVI 69
D +E + +GF G IT ++ +AA +G L I
Sbjct: 85 DRPFERTITMHKDSTGHVGFIFKNG------------KITSIVKDSSAARNG-LLTEHNI 131
Query: 70 HQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
++N V+ + S + L +G VVT+
Sbjct: 132 CEINGQNVIGLKDSQIADILSTSGTVVTIT 161
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 64.9 bits (158), Expect = 4e-14
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 14 EYEEIRLERGGAGLGFSIAGGTDNPHIGDDTS-------IYITKLIPGGAAASDGRLQVN 66
E + ++ G GF + G I + T Y+ + GG A G L++
Sbjct: 8 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMG 66
Query: 67 DVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
D + +VN VV V H V +++ GN + +
Sbjct: 67 DFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK 99
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70
kDa, Na/PI cotransporter C- terminal-associated
protein, NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 64.8 bits (158), Expect = 4e-14
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 6 VNGGDSEWEYEEIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQ 64
+G S + E +L + G GF + D I + G A G L
Sbjct: 5 SSGMASTFNPRECKLSKQEGQNYGFFLRIEKDTDGH------LIRVIEEGSPAEKAG-LL 57
Query: 65 VNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
D + ++N V V H+ VE ++++GN VTLL
Sbjct: 58 DGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL 92
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI,
signaling protein; 1.80A {Mus musculus}
Length = 106
Score = 64.0 bits (156), Expect = 8e-14
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 17 EIRLERG-GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHV 75
E +L + G GF + D I + G A G L D + ++N V
Sbjct: 4 ESKLSKQEGQNYGFFLRIEKDTDGH------LIRVIEEGSPAEKAG-LLDGDRVLRINGV 56
Query: 76 TVVDVPHSAAVEALKRAGNVVTLL 99
V H+ VE ++++GN VTLL
Sbjct: 57 FVDKEEHAQVVELVRKSGNSVTLL 80
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding,
protein-binding, RHOB, nitration, cytoplasm, PDZ
domain, CAsp8; 1.82A {Homo sapiens}
Length = 109
Score = 63.3 bits (154), Expect = 2e-13
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 18 IRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
IR LGF++ G + + L P +A+ G + D I + V
Sbjct: 27 IRFTAEEGDLGFTLRGNAP---------VQVHFLDPYCSASVAG-AREGDYIVSIQLVDC 76
Query: 78 VDVPHSAAVEALKRAGNVVTLL 99
+ S ++ LK G +
Sbjct: 77 KWLTLSEVMKLLKSFGEDEIEM 98
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 63.0 bits (153), Expect = 3e-13
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 24/105 (22%)
Query: 18 IRLERGGAGLGFSIAGGTDNP-----------------------HIGDDTSIYITKLIPG 54
+ L+R G GF++ P + +I++ ++ G
Sbjct: 12 VTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEG 71
Query: 55 GAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
G A G L D I +VN +V+ +S + ++ + + L
Sbjct: 72 GPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELS 115
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 63.1 bits (153), Expect = 3e-13
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 14 EYEEIRLERGGAGLGFSIAGGTDNPHIGDDTS-------IYITKLIPGGAAASDGRLQVN 66
E + ++ G GF + G I + T Y+ + GG A G L++
Sbjct: 28 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMG 86
Query: 67 DVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
D + +VN VV V H V +++ GN + +
Sbjct: 87 DFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK 119
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ
domain, arhgef11, KIAA0380, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 61.9 bits (151), Expect = 4e-13
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 18 IRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
+ +++ G GF+++G D + + PGGAA G ++ D I +VN V
Sbjct: 12 VIIQKDQHGFGFTVSG--DRIV-------LVQSVRPGGAAMKAG-VKEGDRIIKVNGTMV 61
Query: 78 VDVPHSAAVEALKRAGNVVTLL 99
+ H V+ +K V L
Sbjct: 62 TNSSHLEVVKLIKSGAYVALTL 83
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 60.0 bits (146), Expect = 1e-12
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 18 IRLERGGAG-LGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVT 76
I + + G +GF G IT ++ +AA +G L I ++N
Sbjct: 8 ITMHKDSTGHVGFIFKNGK------------ITSIVKDSSAARNG-LLTEHNICEINGQN 54
Query: 77 VVDVPHSAAVEALKRAGNVVTLL 99
V+ + S + L +G VVT+
Sbjct: 55 VIGLKDSQIADILSTSGTVVTIT 77
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 3; structural genomics consortium, SGC, PDZ
domain, signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 60.6 bits (147), Expect = 2e-12
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 14 EYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVN 73
I L +G G GF+IA + + LQ D+I ++
Sbjct: 12 LLVTIPLIKGPKGFGFAIADSPTGQKVKMILD-----------SQWCQGLQKGDIIKEIY 60
Query: 74 HVTVVDVPHSAAVEALKRA--GNVVTLL 99
H V ++ H VE LK+ G V LL
Sbjct: 61 HQNVQNLTHLQVVEVLKQFPVGADVPLL 88
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs
large homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 58.6 bits (142), Expect = 6e-12
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 9 GDSEWEYEEIRLER-GGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVND 67
G S + + + G LG + + + I +++ GG A G L V D
Sbjct: 1 GSSGSSGRMVGIRKTAGEHLGVTFRV--------EGGELVIARILHGGMVAQQGLLHVGD 52
Query: 68 VIHQVNHVTVVDVPHSAAVEALKRAGNVVTLL 99
+I +VN V A E L+ A V L
Sbjct: 53 IIKEVNGQP-VGSDPRALQELLRNASGSVILK 83
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 59.0 bits (143), Expect = 6e-12
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 18 IRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
I LGF++ G T + + L P +A+ G + D I + V
Sbjct: 19 IHFTVEEGDLGFTLRGNTP---------VQVHFLDPHCSASLAG-AKEGDYIVSIQGVDC 68
Query: 78 VDVPHSAAVEALKRAGNVVTLL 99
+ S ++ LK G +
Sbjct: 69 KWLTVSEVMKLLKSFGGEEVEM 90
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1;
copper chaperone for superoxide dismutase, neuronal
adaptor, protein transport; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 90
Score = 58.2 bits (141), Expect = 8e-12
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 18 IRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
IR LGFS+ G I L+ GG A G ++V I ++N +V
Sbjct: 17 IRRPDLRYQLGFSVQNG------------IICSLMRGGIAERGG-VRVGHRIIEINGQSV 63
Query: 78 VDVPHSAAVEALKRAGNVVTLL 99
V PH V L A + +
Sbjct: 64 VATPHEKIVHILSNAVGEIHMK 85
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 62.2 bits (150), Expect = 1e-11
Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 13/143 (9%)
Query: 9 GDSEWEYEEIRL--ERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVN 66
G ++L R G +G +AGG +D I++ ++ AA +G L+
Sbjct: 1 GSHMILRPSMKLVKFRKGDSVGLRLAGG-------NDVGIFVAGVLEDSPAAKEG-LEEG 52
Query: 67 DVIHQVNHVTVVDVPHSAAVEALKRA--GNVVTLLGEKNLENVTHEEAVATLKATHERVN 124
D I +VN+V ++ AV L G VT+L +K + + + R +
Sbjct: 53 DQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTH 112
Query: 125 L-LIGKFEPALRNSTNHLAHPSD 146
+ L + + D
Sbjct: 113 FEYEKESPYGLSFNKGEVFRVVD 135
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 56.5 bits (135), Expect = 1e-09
Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 12/133 (9%)
Query: 18 IRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTV 77
++ +G +G +AGG +D I++ ++ AA +G L+ D I +VN+V
Sbjct: 5 VKFRKGD-SVGLRLAGG-------NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDF 55
Query: 78 VDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEEAVATLKATHERVNLLI---GKFEPAL 134
++ AV L + + + V + + + L
Sbjct: 56 TNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGL 115
Query: 135 RNSTNHLAHPSDI 147
+ + D
Sbjct: 116 SFNKGEVFRVVDT 128
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 51.2 bits (122), Expect = 6e-09
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 18 IRLERGGA---GLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNH 74
I +E+ GFS++ ++ +Y+ + G A+ G L+ D I ++N+
Sbjct: 19 IHIEKSDTAADTYGFSLSSVEEDG----IRRLYVNSVKETGLASKKG-LKAGDEILEINN 73
Query: 75 VTVVDVPHSAAVEALKRAGNVVTL 98
+ S + L + + +
Sbjct: 74 RAADALNSSMLKDFLSQPSLGLLV 97
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 48.4 bits (115), Expect = 3e-08
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 19 RLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVV 78
+ + GFS++ ++ +Y+ + G A+ G L+ D I ++N+
Sbjct: 14 KSDTAADTYGFSLSSVEED----GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAAD 68
Query: 79 DVPHSAAVEALKR 91
+ S + L +
Sbjct: 69 ALNSSMLKDFLSQ 81
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 41.8 bits (98), Expect = 2e-05
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 23 GGAGLGFSIAGGTDNPHIGDDTS--IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDV 80
G + + G +N + + I ++PG A L VI +N + ++
Sbjct: 2 GSSHHHHHHSSGRENLYFQGHQPDGVQIDSVVPGSPA--SKVLTPGLVIESINGMPTSNL 59
Query: 81 PHSAAVEALKRAGNVVTLLGEKNLENVT 108
+A G V+ + ++ ++
Sbjct: 60 TTYSAALKTISVGEVINITTDQGTFHLK 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 6e-04
Identities = 16/111 (14%), Positives = 40/111 (36%), Gaps = 24/111 (21%)
Query: 19 RLERGGAGLG-FSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNH--- 74
R E G + G +I G + Y+ + + + +++ VN+
Sbjct: 1799 RDELGRSNYGMIAINPGRVAASFSQEALQYVVERV---GKRTGWLVEI------VNYNVE 1849
Query: 75 --VTVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEEAVATLKATHERV 123
V + + AL NV+ + + ++ + +++++ E V
Sbjct: 1850 NQQYVA----AGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL-----EEV 1891
Score = 36.6 bits (84), Expect = 0.004
Identities = 35/207 (16%), Positives = 61/207 (29%), Gaps = 75/207 (36%)
Query: 27 LGFSIAG-GTDNP-----HIGDDTSIYITKLIPG--GAAASDGRLQVNDVIHQVNHVT-- 76
GFSI +NP H G + I + DG+L+ + ++N +
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 77 ---------------------VVDVPHSAAVEALKRAGNVVTL-------LGE------- 101
+++ AA E LK G + LGE
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEK---AAFEDLKSKGLIPADATFAGHSLGEYAALASL 1773
Query: 102 ---KNLENVTHEEAVATLKATHERVNLLIGKF-EPALRNSTNHLAHPSDI---PSSPNPS 154
++E + ++ R G + A+ ++ I P S
Sbjct: 1774 ADVMSIE--------SLVEVVFYR-----GMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 155 LTKEPMPPPPQALETSVHSLHSSTTAL 181
++E AL+ V + T L
Sbjct: 1821 FSQE-------ALQYVVERVGKRTGWL 1840
Score = 32.3 bits (73), Expect = 0.11
Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 30/156 (19%)
Query: 45 SIYITKLIPGG--AAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEK 102
S+ L+P AS + Q N ++ + D + E L+G K
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE----------LVG-K 63
Query: 103 NLENVTHEEAVATLKATHERVNLLIGKFEPA-LRNSTNH-LAH--PSDIPSSPNPS---- 154
L V+ + + + +NL + +FE L + H LA + ++ +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 155 --------LTKEPMPPPPQ-ALETSVHSLHSSTTAL 181
+ K P AL +V ++ A+
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 37.3 bits (87), Expect = 0.002
Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 27 LGFSIAGGTDNPHIGDDTS-IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAA 85
G ++ + + + A G ++ D+I N V DV +
Sbjct: 368 YGLALRAFEQESPPHGNVIGVQVVGASENSAGWRAG-IRPGDIIISANKKPVTDV--KSL 424
Query: 86 VEALKRAGNVVTLL 99
+ + +
Sbjct: 425 QTIAQEKKKELLVQ 438
Score = 29.6 bits (67), Expect = 0.76
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 48 ITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
++++ P A G L+ D+I Q+N + +L R G+ V +
Sbjct: 286 VSQVNPNSPAELAG-LKAGDIITQINDTKITQATQVKTTISLLRVGSTVKI 335
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 37.3 bits (87), Expect = 0.002
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 3/86 (3%)
Query: 14 EYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVN 73
A +D I I +++ G AA G LQ +DVI VN
Sbjct: 333 TSTSSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAG-LQKDDVIIGVN 391
Query: 74 HVTVVDVPHSAAVEALKRAGNVVTLL 99
V + + + L ++ L
Sbjct: 392 RDRVNSI--AEMRKVLAAKPAIIALQ 415
Score = 29.5 bits (67), Expect = 0.82
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 48 ITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
+++++PG +A G ++ D+I +N + + A G V L
Sbjct: 267 VSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKL 316
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 36.9 bits (86), Expect = 0.003
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 14 EYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVN 73
+ + +++ G A ++ G D + + + G AA G L+ DVI N
Sbjct: 356 QSSQNQVDSSSIFNGIEGAEMSNK---GKDQGVVVNNVKTGTPAAQIG-LKKGDVIIGAN 411
Query: 74 HVTVVDVPHSAAVEALKRAGNVVTLL 99
V ++ + + L +V+ L
Sbjct: 412 QQAVKNI--AELRKVLDSKPSVLALN 435
Score = 29.6 bits (67), Expect = 0.74
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 48 ITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
+++++P +AA G ++ DVI +N + A G+ +TL
Sbjct: 290 VSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTL 339
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 33.6 bits (76), Expect = 0.013
Identities = 13/78 (16%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 27 LGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASD-GRLQVNDVIHQVNHVTVVDVPHSAA 85
GFS+ + + + T++ + ++ + ++ + D I ++N V +
Sbjct: 29 RGFSVTVESASSNYA--TTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEV 86
Query: 86 VEALKRAGNVVTLLGEKN 103
+A+K+ + LL E +
Sbjct: 87 EDAIKQTSQTLQLLIEHD 104
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 33.0 bits (76), Expect = 0.014
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
+Y+ ++P AA GRL+ D I ++ + + K+AG+ V +
Sbjct: 7 VYVMSVLPNMPAA--GRLEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRV 57
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 32.6 bits (75), Expect = 0.019
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
IY + ++ A G+++V D I + + K+AG+ VTL
Sbjct: 3 IYASSVVENMPA--KGKIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTL 53
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes}
PDB: 2kjk_A 3i1e_A
Length = 100
Score = 32.3 bits (74), Expect = 0.023
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
+Y+ + AA L D+I +++ K+ G+ V +
Sbjct: 9 VYVMSVKDDVPAA--DVLHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKI 59
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 33.0 bits (76), Expect = 0.048
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 22/97 (22%)
Query: 23 GGAGLGFSI--------------AGGTDNPHIG-------DDTSIYITKLIPGGAAASDG 61
G GLGF+I G + +G D I +++ GGAAA+ G
Sbjct: 200 GSIGLGFAIPVDQAKRIADELISTGKASHASLGVQVTNDKDTLGAKIVEVVAGGAAANAG 259
Query: 62 RLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
+ V+ +V+ + A K G V L
Sbjct: 260 -VPKGVVVTKVDDRPINSADALVAAVRSKAPGATVAL 295
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type
2 secretion system, protein transport, membrane
protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 29.9 bits (67), Expect = 0.21
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 37 NPHIGDDTS--IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGN 94
+ DD ++ S G LQ D+ +N + + D +
Sbjct: 28 SQVKRDDKVLGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMT 86
Query: 95 VVTL 98
++L
Sbjct: 87 EMSL 90
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 30.7 bits (70), Expect = 0.28
Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 34 GTDNPHIGDDTS-IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA 92
P D + I K+I G A G L+ DVI + V + + V R
Sbjct: 245 QLREPSFPDVQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN---AEDVYEAVRT 300
Query: 93 GNVVTLL----GEKNLENVTHEEA 112
+ + + E VT E
Sbjct: 301 QSQLAVQIRRGRETLTLYVTPEVT 324
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria,
peptid module, hydrolase; 2.75A {Homo sapiens} SCOP:
b.36.1.4
Length = 113
Score = 29.6 bits (67), Expect = 0.28
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 34 GTDNPHIGDDTS-IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA 92
P D + I K+I G A G L+ DVI + V + + V R
Sbjct: 24 QLREPSFPDVQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN---AEDVYEAVRT 79
Query: 93 GNVVTL 98
+ + +
Sbjct: 80 QSQLAV 85
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 30.4 bits (68), Expect = 0.33
Identities = 15/129 (11%), Positives = 35/129 (27%), Gaps = 6/129 (4%)
Query: 24 GAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHS 83
G G S+ ++ ++ G D I +N + +
Sbjct: 1 GMGSSQSVEIPGGGTE-----GYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDT 55
Query: 84 AAVEALKRAGNVVTLLGEKNLENVTHEEAVATLKATHERVNLLIGKFEPALRNSTNHLAH 143
V +L + E +V + L + + + ++ H
Sbjct: 56 LKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWH 115
Query: 144 PSDI-PSSP 151
++ +SP
Sbjct: 116 VLEVESNSP 124
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 29.1 bits (66), Expect = 0.55
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 46 IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
+ + + A +G L+ DVI +V+ + + G+ + +
Sbjct: 59 VIVRSVQSNMPA--NGHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKI 109
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 28.4 bits (64), Expect = 0.73
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 34 GTDNPHIGDDTS-IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVD 79
NP + +S IY+ ++ P + G +Q D+I +VN +VD
Sbjct: 24 KASNPDFPEVSSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVD 69
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 29.2 bits (66), Expect = 0.88
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 34 GTDNPHIGDDTS-IYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRA 92
+ D S YI ++IP A + G L+ NDVI +N +VV + V + +
Sbjct: 243 KDRHRDFPDVISGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVVS---ANDVSDVIKR 298
Query: 93 GNVVTL 98
+ + +
Sbjct: 299 ESTLNM 304
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 29.1 bits (66), Expect = 1.0
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 48 ITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
+++++PG +A G ++ D+I +N + + A G V L
Sbjct: 267 VSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKL 316
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase;
4.00A {Methanosarcina mazei}
Length = 621
Score = 29.0 bits (64), Expect = 1.1
Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 6/110 (5%)
Query: 13 WEYEEIRLERGGAGLGFSIAGGTDNPHIGDDTSIYITKLIPGGAAA---SDGRLQVNDVI 69
+ ++ RG G+G S A G T I ++K P A N+
Sbjct: 101 SRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKI-LSKTSPTAPAHYYELMINTSTNEPD 159
Query: 70 HQVNHVTVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEEAVATLKAT 119
V+ V PH +E RA +++ A+ A
Sbjct: 160 ILVDEVRDWFRPHGTQIELEMRA--AYVKGRRQSIYEYLKATAIVNPHAR 207
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type
2 secretion system, protein transport, membrane
protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 27.1 bits (60), Expect = 1.7
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Query: 41 GDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVDVPHSAAVEALKRAGNVVTL 98
++ S G LQ D+ +N + + D + ++L
Sbjct: 16 DKVLGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSL 72
>1xe7_A YML079WP, hypothetical 22.5 kDa protein in TUB1-CPR3 intergenic
region; jelly roll motif, cupin superfamily, structural
genomics; HET: GUN; 1.75A {Saccharomyces cerevisiae}
SCOP: b.82.1.16 PDB: 1xe8_A*
Length = 203
Score = 27.5 bits (60), Expect = 2.9
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 12/58 (20%)
Query: 142 AHPSDIPSSPN--PSLTKEPMPPPPQALETSVHSLHSSTTALHPMPPLPHPENGIVKE 197
A+ + ++ S K PMP PP +L+ ++ H E G KE
Sbjct: 3 ANVQEAANAAIEPASFVKVPMPEPPSSLQQLINDWQLI----------KHREGGYFKE 50
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 26.7 bits (59), Expect = 3.2
Identities = 4/36 (11%), Positives = 6/36 (16%)
Query: 161 PPPPQALETSVHSLHSSTTALHPMPPLPHPENGIVK 196
L + L P G +
Sbjct: 8 AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLS 43
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.50A
{Oenococcus oeni psu-1}
Length = 395
Score = 27.5 bits (62), Expect = 3.2
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 76 TVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEE 111
T+V + + G VTL+G+ E +T EE
Sbjct: 321 TMVKLDRKYPI------GTRVTLIGKDGGEQITVEE 350
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin
resistance, center for STR genomics of infectious
diseases (csgid); HET: MSE; 2.02A {Enterococcus
faecalis}
Length = 374
Score = 27.5 bits (62), Expect = 3.2
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 76 TVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEE 111
VDV V + G++ TL+G+ E +T
Sbjct: 317 LAVDVTDIPNV----KTGSIATLIGKDGKEEITAPM 348
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 27.5 bits (62), Expect = 3.4
Identities = 9/54 (16%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 74 HVTVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEEAVATLKATHERVNLLI 127
V D+ + + ++ L++ + T + +VT ++ + ER+++L
Sbjct: 32 KVIATDI-NESKLQELEKYPGIQTRVL-----DVTKKKQIDQFANEVERLDVLF 79
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain,
pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP
KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Length = 367
Score = 27.4 bits (62), Expect = 3.8
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 76 TVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEEAVATLKAT 119
+ +P + G VTL+G + +T + VAT + T
Sbjct: 313 ITIRLPKLYPL------GTKVTLIGSNGDKEITATQ-VATYRVT 349
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM
barrel, structural genomics, NEW YORK SGX center for
structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Length = 380
Score = 27.5 bits (62), Expect = 3.9
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 76 TVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEE 111
+V +PH + G VTL+G+ T +
Sbjct: 317 MMVALPHEYPI------GTEVTLIGKSGKYENTLYD 346
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 26.3 bits (58), Expect = 4.3
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 156 TKEPMPPPPQALETSVHSLHSSTTALHPMPPLPHPENGIVKE 197
+ P P+ L+ S+ H PP+ +G+++E
Sbjct: 3 SGSSGPDAPRNLQLSLPREAEGVIVGHWAPPIHT--HGLIRE 42
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET:
PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Length = 371
Score = 27.1 bits (61), Expect = 4.6
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 76 TVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEE 111
++ + V G VVTL+G+ E T +
Sbjct: 317 CMIRLAEEVPV------GPVVTLVGKDGNEENTLQM 346
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine
phosphonate; HET: IN5; 1.60A {Geobacillus
stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A*
2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A*
1ftx_A* 3uw6_A
Length = 388
Score = 27.1 bits (61), Expect = 4.7
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 76 TVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEE 111
++ +P V G VTL+G + E ++ ++
Sbjct: 315 CMIRLPGPLPV------GTKVTLIGRQGDEVISIDD 344
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP;
2.15A {Staphylococcus aureus} PDB: 3oo2_A
Length = 382
Score = 26.7 bits (60), Expect = 5.5
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 6/36 (16%)
Query: 76 TVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEE 111
T+V VP G+ V L+ + E
Sbjct: 315 TIVKVPDQVKA------GDSVILIDNHRESPQSVEV 344
>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM
barrel, NADPH oxidoreductase, enone reductase; HET: FMN;
1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A*
4df2_A*
Length = 407
Score = 26.8 bits (60), Expect = 6.2
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 144 PSDIPSSPNPSLTKEPMPPPPQALETS 170
S S E + P +AL T
Sbjct: 134 ASATYESDAAKEAAEAVGNPVRALTTQ 160
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX
DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2
c.1.6.1 PDB: 1vfh_A* 1vft_A*
Length = 386
Score = 26.3 bits (59), Expect = 7.0
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 76 TVVDVPHSAAVEALKRAGNVVTLLGEKNLENVTHEE 111
VVD+ A AG+ +LG+ T E+
Sbjct: 321 FVVDLGEDLA-----EAGDEAVILGDAERGEPTAED 351
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc
genomics, protein structure initiative; 2.20A
{Campylobacter jejuni}
Length = 464
Score = 26.0 bits (58), Expect = 9.2
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 19/69 (27%)
Query: 34 GTDNPHIGDDTSIYITKLIPGGAAASDGRLQVNDVIHQVNHVTVVD----VPHSAAVEAL 89
G D H G YI ++ + ++ Q+ V+++ S
Sbjct: 243 GAD--HHG-----YIPRMKAAMEFLGFDSNNLEIILAQM--VSLLKDGEPYKMS------ 287
Query: 90 KRAGNVVTL 98
KRAGN + +
Sbjct: 288 KRAGNFILM 296
>2kup_A Fibroblast growth factor receptor substrate 3; complex, SNT-2, PTB
domain, HALK, structural genomics, signa protein,
NPPSFA; NMR {Homo sapiens} PDB: 2ys5_A
Length = 146
Score = 25.5 bits (55), Expect = 9.5
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 135 RNSTNHLAHPSDIPSSPNPSLTKEPMPP-PPQALETSVHS 173
NS N + P I + +P+ P P PP AL +V S
Sbjct: 107 CNSINVMEEPVIITRNSHPAELDLPRAPQPPNALGYTVSS 146
>1v02_A Dhurrinase, dhurrinase-1; beta-glucosidase, dhurrin hydrolysis,
PEST defense, family GH1, hydrolase; 1.9A {Sorghum
bicolor} SCOP: c.1.8.4 PDB: 1v02_E 1v03_A*
Length = 565
Score = 26.1 bits (58), Expect = 10.0
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
Query: 132 PALRNSTNHLAHPSDIPSSPNP------SLTKEPMPPPPQALETSVHS----LHSSTTAL 181
L ++ NH AHP+ + S PN L P + S + S + +
Sbjct: 3 LLLASAINHTAHPAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGI 62
Query: 182 HPMPPLPHPE 191
H + P P
Sbjct: 63 HRLSPWEIPR 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.130 0.382
Gapped
Lambda K H
0.267 0.0841 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,295,106
Number of extensions: 197668
Number of successful extensions: 1067
Number of sequences better than 10.0: 1
Number of HSP's gapped: 843
Number of HSP's successfully gapped: 283
Length of query: 208
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 119
Effective length of database: 4,216,824
Effective search space: 501802056
Effective search space used: 501802056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (24.8 bits)