BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10228
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 285 bits (729), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 133/159 (83%), Positives = 148/159 (93%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR +REYEVDGRDYHFVSSREQME+DIQNHLFIEAGQYNDNLYGTSVASVR+VAEKGKH
Sbjct: 132 TTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKH 191
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
CILDVSGNAIKRLQVA LYPVA+FIKPKSV+S+MEMN+RMTEEQAKK Y+R++KMEQEFG
Sbjct: 192 CILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKMEQEFG 251
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
E+FT VVQGD E+IY KVK +I QSGP+IWVPSK+ L
Sbjct: 252 EYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIWVPSKESL 290
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 261 bits (667), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 119/159 (74%), Positives = 145/159 (91%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR +R+YEVDGRDYHFV+SREQMEKDIQ H FIEAGQYN++LYGTSV SVR VAEKGKH
Sbjct: 138 TTRPKRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGTSVQSVRAVAEKGKH 197
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
CILDVSGNAIKRLQ+A LYP++IFIKPKS+E+IMEMNKR+T+EQA+K ++R++++EQEF
Sbjct: 198 CILDVSGNAIKRLQIAQLYPISIFIKPKSMENIMEMNKRLTDEQARKTFERAVRLEQEFT 257
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
E FTA+VQGD EDIY +VK++I+EQSGP IWVP+K+ L
Sbjct: 258 EHFTAIVQGDTLEDIYNQVKQIIEEQSGPYIWVPAKEKL 296
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 244 bits (622), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 109/159 (68%), Positives = 140/159 (88%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR +REYE+DGRDYHFVSSRE+MEKDIQ H FIEAGQYN +LYGTSV SVR+VAE+GKH
Sbjct: 143 TTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKH 202
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
CILDVS NA++RLQ A L+P+AIFI+P+S+E+++E+NKR+TEEQA+K +DR+ K+EQEF
Sbjct: 203 CILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFT 262
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
E F+A+V+GD E+IY KVK VI++ SGP IWVP+++ L
Sbjct: 263 ECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARERL 301
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 243 bits (621), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 109/159 (68%), Positives = 140/159 (88%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR +REYE+DGRDYHFVSSRE+MEKDIQ H FIEAGQYN +LYGTSV SVR+VAE+GKH
Sbjct: 137 TTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKH 196
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
CILDVS NA++RLQ A L+P+AIFI+P+S+E+++E+NKR+TEEQA+K +DR+ K+EQEF
Sbjct: 197 CILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFT 256
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
E F+A+V+GD E+IY KVK VI++ SGP IWVP+++ L
Sbjct: 257 ECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARERL 295
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 241 bits (615), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 108/159 (67%), Positives = 140/159 (88%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR +REYE+DGRDYHFVSSRE+MEKDI+ H FIEAGQYN +LYGTSV SVR+VAE+GKH
Sbjct: 563 TTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKH 622
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
CILDVS NA++RLQ A L+P+AIFI+P+S+E+++E+NKR+TEEQA+K +DR+ K+EQEF
Sbjct: 623 CILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFT 682
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
E F+A+V+GD E+IY KVK VI++ SGP IWVP+++ L
Sbjct: 683 ECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARERL 721
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 88/153 (57%), Gaps = 10/153 (6%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR R E DG+DY+FV+ RE M++DI FIE +++ NLYGTS +VR V +
Sbjct: 39 TTRNPRPGEEDGKDYYFVT-REMMQRDIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRI 97
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM----TEEQ-AKKMYDRSMKM 181
C+LDV ++ ++ L P+ IF++P S++ ++E R+ TEE AK++ M
Sbjct: 98 CVLDVDLQGVRSIKKTDLCPIYIFVQPPSLD-VLEQRLRLRNTETEESLAKRLAAARTDM 156
Query: 182 E--QEFGEFFTAVVQGDMPEDIYQKVKEVIQEQ 212
E +E G F ++ D+ + Y +K+ + E+
Sbjct: 157 ESSKEPGLFDLVIINDDL-DKAYATLKQALSEE 188
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 22/156 (14%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR R EV+G+DY+FVS E + I+N+ FIE Q++ N YG++VASV+ V++ GK
Sbjct: 52 TTRTPRAGEVNGKDYNFVSVDE-FKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKT 110
Query: 127 CILDVSGNAIKRLQ-VASLYPVAIFIKPKSVESIME------------MNKRMTEEQAKK 173
CILD+ +K ++ + L +FI P SVE + + +NKR++ QA+
Sbjct: 111 CILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAEL 170
Query: 174 MYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVI 209
Y E G +V D+ + Y+++K+ I
Sbjct: 171 AY-------AETGAHDKVIVNDDL-DKAYKELKDFI 198
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 22/160 (13%)
Query: 63 TTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAE 122
+ TTR R EV+G+DY+FVS ++ + I+N+ FIE Q++ N YG++VASV+ V++
Sbjct: 33 SVSSTTRTPRAGEVNGKDYNFVSV-DEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSK 91
Query: 123 KGKHCILDVSGNAIKRLQ-VASLYPVAIFIKPKSVESIME------------MNKRMTEE 169
GK CILD+ +K ++ + L +FI P SVE + + +NKR++
Sbjct: 92 SGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAA 151
Query: 170 QAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVI 209
QA+ Y E G +V D+ + Y+++K+ I
Sbjct: 152 QAELAY-------AETGAHDKVIVNDDL-DKAYKELKDFI 183
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 22/160 (13%)
Query: 63 TTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAE 122
+ TTR R EV+G+DY+FVS ++ + I+N+ FIE Q++ N YG++VASV+ V++
Sbjct: 32 SVSSTTRTPRAGEVNGKDYNFVSV-DEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSK 90
Query: 123 KGKHCILDVSGNAIKRLQ-VASLYPVAIFIKPKSVESIME------------MNKRMTEE 169
GK CILD+ +K ++ + L +FI P SVE + + +NKR++
Sbjct: 91 SGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAA 150
Query: 170 QAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVI 209
QA+ Y E G +V D+ + Y+++K+ I
Sbjct: 151 QAELAY-------AETGAHDKVIVNDDL-DKAYKELKDFI 182
>pdb|3LH5|A Chain A, Crystal Structure Of The Sh3-Guanylate Kinase Core Domain
Of Zo-1
Length = 251
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 116 SVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEE---QAK 172
+++ + ++ KH +LDV+ NA+ RL A YP+ +F+ P S + + M R+ E A+
Sbjct: 141 TIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSAR 200
Query: 173 KMYDRSMKMEQEFGEFFTAVVQ-GDMPEDIYQKVKEVIQEQSGPSIWV 219
K+Y+RS K+ + FT + M + Y +KE IQ+Q +WV
Sbjct: 201 KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWV 248
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 116 SVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEE---QAK 172
+++ + ++ KH +LDV+ NA+ RL A YP+ +F+ P S + + M R+ E A+
Sbjct: 273 TIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSAR 332
Query: 173 KMYDRSMKMEQEFGEFFTAVVQ-GDMPEDIYQKVKEVIQEQSGPSIWV 219
K+Y+RS K+ + FT + M + Y +KE IQ+Q +WV
Sbjct: 333 KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWV 380
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 116 SVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEE---QAK 172
+++ + ++ KH +LDV+ NA+ RL A YP+ +F+ P S + + M R+ E A+
Sbjct: 281 TIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSAR 340
Query: 173 KMYDRSMKMEQEFGEFFTAVVQ-GDMPEDIYQKVKEVIQEQSGPSIWV 219
K+Y+RS K+ + FT + M + Y +KE IQ+Q +WV
Sbjct: 341 KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWV 388
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR R+ E DG++YHF+S+ E+M ++I + F+E G Y N++GT +V + ++ K
Sbjct: 54 TTRPPRKSEEDGKEYHFIST-EEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKI 112
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
ILD+ +K ++ A L P +FI P ++ E +++ S + ++
Sbjct: 113 AILDIEPQTLKIVRTAELSPFIVFIAP--------TDQGTQTEALQQLQKDSEAIRSQYA 164
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWV 219
+F + + ++ +K++E + WV
Sbjct: 165 HYFDLSLVNNGVDETLKKLQEAFDQACSSPQWV 197
>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of
Human Cask
Length = 180
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 80/144 (55%), Gaps = 6/144 (4%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR ++ E +G++Y+FVS +QM +DI N+ ++E G + D +YGT + ++R + E+G
Sbjct: 40 TTRPPKKDEENGKNYYFVS-HDQMMQDISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLI 98
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
ILDV A+K L+ A P +FI ++ + +E +++ S +++ +
Sbjct: 99 AILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLN-----EDESLQRLQKESDILQRTYA 153
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQ 210
+F + + ++ + ++E ++
Sbjct: 154 HYFDLTIINNEIDETIRHLEEAVE 177
>pdb|3KFV|A Chain A, Crystal Structure Of The Sh3-Kinase Fragment Of Tight
Junction Protein 3 (Tjp3) In Apo-Form
Length = 308
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 116 SVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM---TEEQAK 172
+VR +AEK KH +LDV+ +AI+RL YP+ +F P+S ++ + + + + +
Sbjct: 190 TVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLAPASRRSTR 249
Query: 173 KMYDRSMKMEQEFGEFFTAVVQGDMPEDI-YQKVKEVIQEQSGPSIWV 219
++Y ++ K+ + FTA + + D YQ++K +I+EQ IW
Sbjct: 250 RLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPIWT 297
>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase
Length = 204
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR +RE E +G DY+FV ++ E+ ++ F+E +Y +N YGT + +GK
Sbjct: 47 TTRNKREKETNGVDYYFVD-KDDFERKLKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKI 105
Query: 127 CILDVSGNAIKRLQVASLY--PVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQE 184
C+ + + N +K+L+ + + IF+KP S++ ++ K E+ +++ R ++ +E
Sbjct: 106 CLFEXNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRXQELTRE 165
>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium
Falciparum
Length = 218
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 80/150 (53%), Gaps = 9/150 (6%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR +RE E +G DY+F+ + E ++N F+E Y +N YGT + E+ K
Sbjct: 58 TTRKKREKEKEGVDYYFID-KTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKI 116
Query: 127 CILDVSGNAIKRLQVASLYPVA--IFIKPKSVESIME-MNKRMTEEQ---AKKMYDRSMK 180
C+ +++ N +K+L+ ++ A IFIKP S + ++ + R TE Q K+M +++
Sbjct: 117 CLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE 176
Query: 181 M-EQEFGEFFTAVVQGDMPEDIYQKVKEVI 209
+ E F +++ D+ YQ++K +
Sbjct: 177 LHEANLLNFNLSIINDDLTL-TYQQLKNYL 205
>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|B Chain B, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|C Chain C, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|D Chain D, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
Length = 207
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR RE EVDG DY F +R+ E I++ FIE +Y N YGT V V+D ++G
Sbjct: 41 TTRQMREGEVDGVDYFF-KTRDAFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHD 99
Query: 127 CILDVSGNAIKRLQVASLYPVA--IFIKPKSVESIME-MNKRMTEEQAK 172
L++ K QV +P A IF+ P S+E + E + R TE K
Sbjct: 100 VFLEIEVEGAK--QVRKKFPDALFIFLAPPSLEHLRERLVGRGTESDEK 146
>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
pdb|3LNC|B Chain B, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
Length = 231
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTRA R+ E +G+DY+FV RE+ + N IE + N YG ++ D +KG
Sbjct: 62 TTRAARKGEKEGKDYYFV-DREEFLRLCSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVS 120
Query: 127 CILDVSG-NAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQA 171
+L + A K +++ + V+IFI P S+E E+ +R+ +A
Sbjct: 121 TLLVIDWQGAFKFMEMMREHVVSIFIMPPSME---ELRRRLCGRRA 163
>pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
pdb|3TAU|B Chain B, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
Length = 208
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 58 TQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASV 117
T D + TTR RE E DG DY+F SRE E+ I++ +E +Y N YGT + V
Sbjct: 34 TSFDYSISXTTRLPREGEQDGVDYYF-RSREVFEQAIKDGKXLEYAEYVGNYYGTPLEYV 92
Query: 118 RDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKP 153
+ G L++ +++ A + IF+ P
Sbjct: 93 EEKLAAGVDIFLEIEVQGAXQVRKAXPEGIFIFLTP 128
>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
pdb|1S96|B Chain B, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
Length = 219
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 10/137 (7%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR R EV G Y FV+ ++ ++ I F+E + N YGTS ++ V G
Sbjct: 52 TTRQPRPGEVHGEHYFFVN-HDEFKEXISRDAFLEHAEVFGNYYGTSREAIEQVLATGVD 110
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM------TEEQAKKMYDRSMK 180
LD+ ++++ + +IFI P S +E+++R+ +EE K +++
Sbjct: 111 VFLDIDWQGAQQIRQKXPHARSIFILPPSK---IELDRRLRGRGQDSEEVIAKRXAQAVA 167
Query: 181 MEQEFGEFFTAVVQGDM 197
+ E+ +V D
Sbjct: 168 EXSHYAEYDYLIVNDDF 184
>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2AN9|B Chain B, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2ANB|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gmp
pdb|2ANC|A Chain A, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|B Chain B, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|C Chain C, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|D Chain D, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|E Chain E, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|F Chain F, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2F3R|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3R|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3T|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|C Chain C, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|D Chain D, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|E Chain E, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|F Chain F, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
Length = 207
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 63 TTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAE 122
+ TTR R EV G Y FV+ ++ ++ I F+E + N YGTS ++ V
Sbjct: 36 SVSHTTRQPRPGEVHGEHYFFVN-HDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLA 94
Query: 123 KGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM 166
G LD+ ++++ + +IFI P S +E+++R+
Sbjct: 95 TGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSK---IELDRRL 135
>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
Tuberculosis Guanylate Kinase
pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gmp
pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gdp
pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
Tuberculosis Guanylate Kinase In Complex With Gdp
Length = 207
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY--GTSVASVRDVAEKG 124
TTRA R EVDG DYHF+ + ++ I +E + + L+ GT VR A G
Sbjct: 54 TTRAPRPGEVDGVDYHFIDP-TRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATG 112
Query: 125 KHCILDVSGNAIKRLQVASLYPVAIFIKPKS 155
+++V + ++ V +F+ P S
Sbjct: 113 VPVLIEVDLAGARAIKKTMPEAVTVFLAPPS 143
>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
Tuberculosis (Rv1389)
Length = 228
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY--GTSVASVRDVAEKG 124
TTRA R EVDG DYHF+ + ++ I +E + + L+ GT VR A G
Sbjct: 57 TTRAPRPGEVDGVDYHFIDP-TRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATG 115
Query: 125 KHCILDVSGNAIKRLQVASLYPVAIFIKPKS 155
+++V + ++ V +F+ P S
Sbjct: 116 VPVLIEVDLAGARAIKKTMPEAVTVFLAPPS 146
>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii
Length = 205
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR +R + +G DY F+ + + ++ F+E + YGT V + G+
Sbjct: 41 TTRPKRPGDQEGVDYFFIDE-TRFQAXVKEGAFLEHATIYERHYGTEKDWVLRQLKAGRD 99
Query: 127 CILDVSGNAIKRLQVASLYP--VAIFIKPKSVESIME-MNKRMTEEQA 171
+L++ + Q+ L+P ++IFI P S+E++ E + KR ++ A
Sbjct: 100 VLLEIDWQGAR--QIRELFPPALSIFILPPSIEALRERLIKRRQDDTA 145
>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From
Mycobacterium Tuberculosis (Rv1389)
Length = 228
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY--GTSVASVRDVAEKG 124
TTR R EVDG DYHF+ + ++ I +E + + L+ GT VR A G
Sbjct: 57 TTRCPRPGEVDGVDYHFIDP-TRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATG 115
Query: 125 KHCILDVSGNAIKRLQVASLYPVAIFIKPKS 155
+++V + ++ V +F+ P S
Sbjct: 116 VPVLIEVDLAGARAIKKTMPEAVTVFLAPPS 146
>pdb|2BMO|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase
pdb|2BMQ|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With Nitrobenzene
pdb|2BMR|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With 3-Nitrotoluene
Length = 447
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 158 SIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFT-AVVQGDMPEDIYQKVKEVIQEQSGPS 216
+I N +T A ++++ +++ E +T A V+ DMPED+ ++V + +Q GP+
Sbjct: 297 TIFPNNSFLTGSAAFRVWN---PIDENTTEVWTYAFVEKDMPEDLKRRVADAVQRSIGPA 353
Query: 217 IWVPSKD 223
+ S D
Sbjct: 354 GFWESDD 360
>pdb|2HMJ|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase
Phe-352-Val Mutant.
pdb|2HML|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Phenanthrene.
pdb|2HMN|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Anthracene
Length = 449
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 191 AVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKD 223
A+V+ DMPED+ +++ + +Q GP+ + S D
Sbjct: 330 AIVEKDMPEDLKRRLADSVQRTVGPAGFWESDD 362
>pdb|1NDO|A Chain A, Napthalene 1,2-Dioxygenase
pdb|1NDO|C Chain C, Napthalene 1,2-Dioxygenase
pdb|1NDO|E Chain E, Napthalene 1,2-Dioxygenase
pdb|1EG9|A Chain A, Naphthalene 1,2-Dioxygenase With Indole Bound In The
Active Site.
pdb|1O7M|A Chain A, Naphthalene 1,2-Dioxygenase, Binary Complex With Dioxygen
pdb|1O7N|A Chain A, Naphthalene 1,2-dioxygenase, Ternary Complex With Dioxygen
And Indole
pdb|1O7P|A Chain A, Naphthalene 1,2-Dioxygenase, Product Complex
pdb|1O7W|A Chain A, Naphthalene 1,2-Dioxygenase, Fully Reduced Form
pdb|1O7G|A Chain A, Naphthalene 1,2-Dioxygenase With Naphthalene Bound In The
Active Site.
pdb|1O7H|A Chain A, Naphthalene 1,2-Dioxygenase With Oxidized Rieske Iron
Sulphur Center Site.
pdb|1UUV|A Chain A, Naphthalene 1,2-Dioxygenase With Nitric Oxide And Indole
Bound In The Active Site.
pdb|1UUW|A Chain A, Naphthalene 1,2-dioxygenase With Nitric Oxide Bound In The
Active Site.
pdb|2HMK|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Phenanthrene
pdb|2HMM|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Anthracene
pdb|2HMO|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
3- Nitrotoluene
Length = 449
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 191 AVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKD 223
A+V+ DMPED+ +++ + +Q GP+ + S D
Sbjct: 330 AIVEKDMPEDLKRRLADSVQRTFGPAGFWESDD 362
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQE--QSGPSIWVPSKD 223
EF A+V G +P++ V++ I+E QSGP I P D
Sbjct: 524 EFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVD 562
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQE--QSGPSIWVPSKD 223
EF A+V G +P++ V++ I+E QSGP I P D
Sbjct: 524 EFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVD 562
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQE--QSGPSIWVPSKD 223
EF A+V G +P++ V++ I+E QSGP I P D
Sbjct: 524 EFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVD 562
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQE--QSGPSIWVPSKD 223
EF A+V G +P++ V++ I+E QSGP I P D
Sbjct: 524 EFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVD 562
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQE--QSGPSIWVPSKD 223
EF A+V G +P++ V++ I+E QSGP I P D
Sbjct: 524 EFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVD 562
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQE--QSGPSIWVPSKD 223
EF A+V G +P++ V++ I+E QSGP I P D
Sbjct: 524 EFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVD 562
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQE--QSGPSIWVPSKD 223
EF A+V G +P++ V++ I+E QSGP I P D
Sbjct: 524 EFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVD 562
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQE--QSGPSIWVPSKD 223
EF A+V G +P++ V++ I+E QSGP I P D
Sbjct: 524 EFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVD 562
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQE--QSGPSIWVPSKD 223
EF A+V G +P++ V++ I+E QSGP I P D
Sbjct: 491 EFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVD 529
>pdb|2LBX|A Chain A, Solution Structure Of The S. Cerevisiae HACA RNP PROTEIN
NHP2P
Length = 121
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 186 GEFFTAVVQGDM-PEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
GE V+ GD+ P D+ + + ++ S P I++PSK L
Sbjct: 35 GEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDL 75
>pdb|2LBW|A Chain A, Solution Structure Of The S. Cerevisiae HACA RNP PROTEIN
NHP2P-S82w Mutant
Length = 121
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 186 GEFFTAVVQGDM-PEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
GE V+ GD+ P D+ + + ++ S P I++PSK L
Sbjct: 35 GEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDL 75
>pdb|1Z84|A Chain A, X-Ray Structure Of Galt-Like Protein From Arabidopsis
Thaliana At5g18200
pdb|1Z84|B Chain B, X-Ray Structure Of Galt-Like Protein From Arabidopsis
Thaliana At5g18200
pdb|1ZWJ|A Chain A, X-Ray Structure Of Galt-Like Protein From Arabidopsis
Thaliana At5g18200
pdb|1ZWJ|B Chain B, X-Ray Structure Of Galt-Like Protein From Arabidopsis
Thaliana At5g18200
pdb|2Q4H|A Chain A, Ensemble Refinement Of The Crystal Structure Of Galt-Like
Protein From Arabidopsis Thaliana At5g18200
pdb|2Q4H|B Chain B, Ensemble Refinement Of The Crystal Structure Of Galt-Like
Protein From Arabidopsis Thaliana At5g18200
pdb|2Q4L|A Chain A, Ensemble Refinement Of The Crystal Structure Of Galt-Like
Protein From Arabidopsis Thaliana At5g18200
pdb|2Q4L|B Chain B, Ensemble Refinement Of The Crystal Structure Of Galt-Like
Protein From Arabidopsis Thaliana At5g18200
Length = 351
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 123 KGKHCILDVSGNAIKRLQVASLYPVAIFIKPK 154
K KH ++D S + + A+ YP I+I PK
Sbjct: 222 KSKHFVIDESSHFVSVAPFAATYPFEIWIIPK 253
>pdb|2H39|A Chain A, Crystal Structure Of An Adp-Glucose Phosphorylase From
Arabidopsis Thaliana With Bound Adp-Glucose
pdb|2H39|B Chain B, Crystal Structure Of An Adp-Glucose Phosphorylase From
Arabidopsis Thaliana With Bound Adp-Glucose
Length = 351
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 123 KGKHCILDVSGNAIKRLQVASLYPVAIFIKPK 154
K KH ++D S + + A+ YP I+I PK
Sbjct: 222 KSKHFVIDESSHFVSVAPFAATYPFEIWIIPK 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,588,301
Number of Sequences: 62578
Number of extensions: 190680
Number of successful extensions: 727
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 59
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)