Query psy10228
Match_columns 225
No_of_seqs 164 out of 1177
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 21:09:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0194 Gmk Guanylate kinase [ 100.0 7.2E-50 1.6E-54 333.0 18.7 162 49-212 3-183 (191)
2 PRK14737 gmk guanylate kinase; 100.0 2.9E-47 6.4E-52 319.6 20.0 158 50-211 4-184 (186)
3 KOG0609|consensus 100.0 1.2E-47 2.6E-52 357.2 16.7 190 30-222 322-539 (542)
4 PF00625 Guanylate_kin: Guanyl 100.0 5.4E-46 1.2E-50 309.1 18.2 159 50-212 2-183 (183)
5 smart00072 GuKc Guanylate kina 100.0 5E-45 1.1E-49 304.0 20.6 161 50-212 2-183 (184)
6 PLN02772 guanylate kinase 100.0 3.1E-42 6.6E-47 316.3 19.5 165 47-213 132-320 (398)
7 PRK14738 gmk guanylate kinase; 100.0 7.7E-36 1.7E-40 253.4 20.3 166 45-212 8-195 (206)
8 KOG0708|consensus 100.0 3E-36 6.5E-41 271.7 16.4 191 17-222 132-359 (359)
9 KOG0707|consensus 100.0 2.1E-35 4.5E-40 252.9 10.3 165 47-213 34-223 (231)
10 TIGR03263 guanyl_kin guanylate 100.0 1.4E-31 3.1E-36 220.2 20.0 158 51-210 2-179 (180)
11 PRK00300 gmk guanylate kinase; 100.0 2.4E-30 5.1E-35 217.3 19.5 161 50-212 5-185 (205)
12 cd00071 GMPK Guanosine monopho 100.0 1.3E-30 2.8E-35 208.6 14.3 118 52-205 1-136 (137)
13 PRK10078 ribose 1,5-bisphospho 99.9 3.4E-22 7.4E-27 166.6 13.4 154 51-215 3-180 (186)
14 TIGR02322 phosphon_PhnN phosph 99.9 1.5E-20 3.4E-25 154.7 17.0 151 51-211 2-178 (179)
15 KOG3580|consensus 99.8 3E-20 6.5E-25 175.6 9.5 181 12-222 589-789 (1027)
16 PRK08356 hypothetical protein; 99.8 4.6E-20 1E-24 154.9 6.8 157 48-213 3-194 (195)
17 COG3709 Uncharacterized compon 99.8 3.8E-17 8.2E-22 134.1 15.3 153 50-213 5-184 (192)
18 PRK00091 miaA tRNA delta(2)-is 99.2 2.1E-12 4.5E-17 116.5 1.6 99 51-165 5-130 (307)
19 cd00227 CPT Chloramphenicol (C 99.1 4E-11 8.6E-16 98.8 3.7 155 50-209 2-174 (175)
20 PRK00698 tmk thymidylate kinas 98.8 2.7E-08 5.8E-13 82.9 9.6 152 50-212 3-203 (205)
21 TIGR00174 miaA tRNA isopenteny 98.8 3E-09 6.5E-14 95.2 2.7 70 52-135 1-98 (287)
22 PRK04040 adenylate kinase; Pro 98.6 9.3E-08 2E-12 80.4 7.7 68 143-210 108-188 (188)
23 PRK06762 hypothetical protein; 98.3 4.1E-06 8.9E-11 67.9 9.1 147 51-210 3-163 (166)
24 PRK01184 hypothetical protein; 98.3 3.1E-06 6.7E-11 69.8 8.2 154 52-213 3-180 (184)
25 PRK00081 coaE dephospho-CoA ki 98.2 1.2E-06 2.6E-11 73.7 3.1 81 125-211 107-193 (194)
26 PRK00098 GTPase RsgA; Reviewed 98.0 1.2E-06 2.6E-11 78.5 0.2 76 50-126 164-277 (298)
27 cd01672 TMPK Thymidine monopho 98.0 1.5E-05 3.3E-10 65.3 6.5 148 52-210 2-199 (200)
28 TIGR03574 selen_PSTK L-seryl-t 98.0 1.4E-05 3E-10 69.4 5.8 150 52-211 1-169 (249)
29 PLN02840 tRNA dimethylallyltra 97.9 6.1E-06 1.3E-10 77.5 2.0 73 50-136 21-121 (421)
30 TIGR01360 aden_kin_iso1 adenyl 97.9 0.00011 2.5E-09 60.0 9.3 91 121-211 79-187 (188)
31 PRK05480 uridine/cytidine kina 97.8 6.7E-05 1.5E-09 63.2 7.9 68 143-210 124-207 (209)
32 PRK04182 cytidylate kinase; Pr 97.8 0.00011 2.4E-09 59.6 8.9 89 123-214 73-176 (180)
33 PRK14732 coaE dephospho-CoA ki 97.8 9E-05 2E-09 62.7 8.3 84 123-212 102-191 (196)
34 PRK05541 adenylylsulfate kinas 97.8 1.7E-05 3.7E-10 65.0 3.4 151 49-210 6-171 (176)
35 PRK00131 aroK shikimate kinase 97.8 0.00026 5.7E-09 56.9 9.7 67 145-212 97-172 (175)
36 TIGR02173 cyt_kin_arch cytidyl 97.6 0.0002 4.3E-09 57.7 7.2 87 119-209 69-170 (171)
37 COG1936 Predicted nucleotide k 97.6 0.00094 2E-08 55.9 10.9 142 52-211 2-156 (180)
38 TIGR01313 therm_gnt_kin carboh 97.6 0.00085 1.8E-08 54.1 9.9 92 115-210 61-162 (163)
39 PHA02530 pseT polynucleotide k 97.5 0.00026 5.6E-09 62.6 7.3 122 51-178 3-140 (300)
40 PRK14530 adenylate kinase; Pro 97.5 0.00044 9.6E-09 58.7 8.1 89 124-212 107-214 (215)
41 PRK08233 hypothetical protein; 97.5 0.0011 2.3E-08 53.9 9.9 69 144-212 97-178 (182)
42 PRK05057 aroK shikimate kinase 97.5 0.0035 7.7E-08 51.6 13.0 65 145-211 97-171 (172)
43 TIGR01359 UMP_CMP_kin_fam UMP- 97.5 0.0024 5.2E-08 52.2 11.8 86 124-209 76-182 (183)
44 PRK14730 coaE dephospho-CoA ki 97.5 0.00011 2.3E-09 62.0 3.8 81 124-210 107-193 (195)
45 TIGR00152 dephospho-CoA kinase 97.5 0.0004 8.6E-09 57.7 7.1 80 124-206 105-187 (188)
46 PRK12339 2-phosphoglycerate ki 97.4 0.00056 1.2E-08 58.0 7.8 92 117-210 90-196 (197)
47 PRK14531 adenylate kinase; Pro 97.4 0.0017 3.6E-08 53.8 10.3 85 124-209 79-182 (183)
48 TIGR00041 DTMP_kinase thymidyl 97.4 0.00024 5.2E-09 58.8 5.2 15 50-64 3-17 (195)
49 PRK13946 shikimate kinase; Pro 97.4 0.0017 3.6E-08 53.9 10.2 92 114-213 70-178 (184)
50 PRK13947 shikimate kinase; Pro 97.4 0.0038 8.2E-08 50.5 11.7 63 146-210 95-166 (171)
51 cd02023 UMPK Uridine monophosp 97.4 0.0014 3.1E-08 54.5 9.5 82 124-206 99-192 (198)
52 TIGR00235 udk uridine kinase. 97.4 0.00083 1.8E-08 56.7 7.8 70 143-212 124-205 (207)
53 PRK14532 adenylate kinase; Pro 97.3 0.00048 1E-08 56.9 5.7 151 53-210 3-186 (188)
54 PF13671 AAA_33: AAA domain; P 97.3 9.5E-05 2.1E-09 57.8 1.0 108 52-166 1-119 (143)
55 COG0563 Adk Adenylate kinase a 97.3 0.0017 3.7E-08 54.3 8.5 146 53-209 3-177 (178)
56 PRK13975 thymidylate kinase; P 97.2 0.001 2.3E-08 55.0 7.0 71 145-215 113-194 (196)
57 PLN02200 adenylate kinase fami 97.2 0.0018 3.8E-08 56.3 8.2 155 51-212 44-225 (234)
58 PRK14733 coaE dephospho-CoA ki 97.2 0.0039 8.4E-08 53.3 10.0 67 145-212 129-199 (204)
59 PRK13808 adenylate kinase; Pro 97.2 0.0038 8.2E-08 57.2 10.5 87 126-212 80-194 (333)
60 PRK14731 coaE dephospho-CoA ki 97.2 0.002 4.3E-08 54.7 8.1 66 146-212 135-203 (208)
61 PRK14527 adenylate kinase; Pro 97.1 0.0033 7.1E-08 52.3 9.0 63 147-209 114-190 (191)
62 PRK03839 putative kinase; Prov 97.1 0.017 3.6E-07 47.4 12.8 147 52-216 2-158 (180)
63 PRK05416 glmZ(sRNA)-inactivati 97.1 0.0054 1.2E-07 55.1 10.2 84 126-211 59-160 (288)
64 PRK06696 uridine kinase; Valid 97.0 0.0037 8E-08 53.4 8.6 76 122-199 126-213 (223)
65 PTZ00451 dephospho-CoA kinase; 97.0 0.0051 1.1E-07 54.0 9.2 82 125-212 118-208 (244)
66 PRK14729 miaA tRNA delta(2)-is 97.0 0.0003 6.5E-09 63.5 1.4 71 51-135 5-102 (300)
67 TIGR01351 adk adenylate kinase 97.0 0.0075 1.6E-07 50.9 9.9 42 168-209 162-209 (210)
68 PRK13948 shikimate kinase; Pro 97.0 0.013 2.9E-07 49.1 11.2 146 50-211 10-175 (182)
69 PRK00279 adk adenylate kinase; 96.9 0.017 3.6E-07 49.0 11.8 45 167-211 164-214 (215)
70 KOG1384|consensus 96.9 0.0012 2.7E-08 60.1 4.9 80 50-140 7-113 (348)
71 PRK09270 nucleoside triphospha 96.9 0.0051 1.1E-07 52.7 8.5 54 144-197 160-222 (229)
72 PRK00889 adenylylsulfate kinas 96.9 0.0012 2.5E-08 54.0 4.3 148 50-211 4-170 (175)
73 PLN02422 dephospho-CoA kinase 96.9 0.0084 1.8E-07 52.3 9.7 89 125-219 108-202 (232)
74 PRK08154 anaerobic benzoate ca 96.9 0.0084 1.8E-07 54.1 9.9 154 47-214 130-304 (309)
75 PLN02924 thymidylate kinase 96.8 0.0051 1.1E-07 53.0 7.7 95 114-211 90-203 (220)
76 PLN02748 tRNA dimethylallyltra 96.8 0.00063 1.4E-08 64.9 2.0 72 46-130 18-117 (468)
77 PRK13973 thymidylate kinase; P 96.7 0.011 2.3E-07 50.3 9.0 97 115-212 80-207 (213)
78 PRK06761 hypothetical protein; 96.7 0.014 3.1E-07 52.3 10.0 46 51-99 4-68 (282)
79 PRK14528 adenylate kinase; Pro 96.7 0.0036 7.8E-08 52.2 5.8 150 52-208 3-185 (186)
80 KOG3812|consensus 96.7 0.0078 1.7E-07 55.1 8.2 89 125-213 263-355 (475)
81 COG1102 Cmk Cytidylate kinase 96.7 0.019 4.2E-07 47.8 9.6 87 124-214 73-175 (179)
82 PRK03731 aroL shikimate kinase 96.6 0.036 7.9E-07 44.8 11.1 64 145-211 94-170 (171)
83 PLN02165 adenylate isopentenyl 96.6 0.0062 1.4E-07 55.8 6.9 71 49-130 42-139 (334)
84 PRK13949 shikimate kinase; Pro 96.6 0.041 8.8E-07 45.3 11.1 13 52-64 3-15 (169)
85 KOG3209|consensus 96.5 0.00085 1.8E-08 66.2 0.9 48 65-115 68-115 (984)
86 PRK04220 2-phosphoglycerate ki 96.5 0.058 1.3E-06 48.9 12.2 92 117-212 183-291 (301)
87 PLN02674 adenylate kinase 96.4 0.0091 2E-07 52.4 6.8 42 168-209 196-243 (244)
88 PLN02348 phosphoribulokinase 96.4 0.012 2.6E-07 55.1 7.9 37 28-64 27-63 (395)
89 PF08433 KTI12: Chromatin asso 96.4 0.00075 1.6E-08 60.0 -0.1 145 52-205 3-169 (270)
90 cd00464 SK Shikimate kinase (S 96.4 0.014 3E-07 46.0 7.1 49 145-197 92-149 (154)
91 cd02022 DPCK Dephospho-coenzym 96.4 0.0048 1E-07 51.0 4.5 53 144-197 121-175 (179)
92 PRK02496 adk adenylate kinase; 96.4 0.0094 2E-07 49.0 6.2 65 145-209 107-182 (184)
93 COG0125 Tmk Thymidylate kinase 96.3 0.011 2.4E-07 50.7 6.5 153 50-212 3-204 (208)
94 COG4639 Predicted kinase [Gene 96.3 0.048 1E-06 45.1 9.6 139 51-199 3-152 (168)
95 PRK14526 adenylate kinase; Pro 96.3 0.039 8.4E-07 47.2 9.5 45 167-211 159-209 (211)
96 KOG3079|consensus 96.2 0.033 7.3E-07 47.1 8.6 144 51-211 9-193 (195)
97 PRK14734 coaE dephospho-CoA ki 96.2 0.037 8E-07 46.8 9.0 69 145-214 126-197 (200)
98 PRK13974 thymidylate kinase; P 96.2 0.16 3.4E-06 43.1 12.8 95 117-211 88-206 (212)
99 PRK13976 thymidylate kinase; P 96.2 0.039 8.3E-07 47.2 9.0 95 117-212 79-202 (209)
100 KOG3354|consensus 96.1 0.031 6.6E-07 46.5 7.8 147 50-210 12-187 (191)
101 COG0324 MiaA tRNA delta(2)-iso 96.1 0.0083 1.8E-07 54.4 4.8 67 51-130 4-98 (308)
102 COG0703 AroK Shikimate kinase 96.1 0.15 3.1E-06 42.7 11.8 148 51-212 3-169 (172)
103 PRK12338 hypothetical protein; 96.0 0.033 7.2E-07 50.8 8.5 90 121-214 102-207 (319)
104 PRK03846 adenylylsulfate kinas 96.0 0.0077 1.7E-07 50.5 4.1 26 187-212 166-193 (198)
105 PRK07933 thymidylate kinase; V 96.0 0.35 7.5E-06 41.3 14.1 13 52-64 2-14 (213)
106 cd02020 CMPK Cytidine monophos 96.0 0.052 1.1E-06 42.2 8.4 33 147-179 85-124 (147)
107 TIGR00455 apsK adenylylsulfate 95.9 0.0026 5.6E-08 52.4 0.8 144 50-208 18-183 (184)
108 COG2019 AdkA Archaeal adenylat 95.9 0.043 9.4E-07 46.0 7.8 154 51-211 5-188 (189)
109 cd02026 PRK Phosphoribulokinas 95.9 0.015 3.2E-07 51.7 5.5 54 143-196 114-177 (273)
110 PF06414 Zeta_toxin: Zeta toxi 95.8 0.0037 8.1E-08 52.4 1.3 101 50-155 15-131 (199)
111 PF07931 CPT: Chloramphenicol 95.8 0.028 6.1E-07 46.9 6.4 144 51-209 2-173 (174)
112 PRK06217 hypothetical protein; 95.8 0.06 1.3E-06 44.4 8.3 47 118-165 58-104 (183)
113 TIGR01663 PNK-3'Pase polynucle 95.8 0.022 4.7E-07 55.3 6.4 95 48-166 367-469 (526)
114 PLN02842 nucleotide kinase 95.7 0.16 3.5E-06 49.1 12.0 52 162-213 147-204 (505)
115 PRK14529 adenylate kinase; Pro 95.6 0.17 3.6E-06 43.9 10.7 12 53-64 3-14 (223)
116 cd02021 GntK Gluconate kinase 95.5 0.046 1E-06 43.2 6.4 13 52-64 1-13 (150)
117 PRK03333 coaE dephospho-CoA ki 95.5 0.031 6.7E-07 52.3 6.1 70 144-214 123-195 (395)
118 PTZ00301 uridine kinase; Provi 95.5 0.081 1.8E-06 45.3 8.2 69 143-211 125-205 (210)
119 PRK08118 topology modulation p 95.5 0.067 1.5E-06 43.9 7.4 13 52-64 3-15 (167)
120 KOG3220|consensus 95.5 0.13 2.7E-06 44.4 9.1 92 124-218 107-201 (225)
121 PRK07667 uridine kinase; Provi 95.4 0.046 9.9E-07 45.7 6.4 82 93-178 91-174 (193)
122 PRK07261 topology modulation p 95.3 0.068 1.5E-06 43.9 6.9 48 113-161 48-95 (171)
123 PRK13477 bifunctional pantoate 95.3 0.27 5.8E-06 47.7 11.9 28 191-218 481-510 (512)
124 PRK14021 bifunctional shikimat 95.2 0.31 6.7E-06 47.4 12.1 150 50-211 6-176 (542)
125 PRK05506 bifunctional sulfate 95.1 0.012 2.6E-07 58.1 2.2 151 50-211 460-628 (632)
126 PRK09087 hypothetical protein; 95.1 0.081 1.7E-06 45.6 7.0 104 51-161 45-160 (226)
127 PF00485 PRK: Phosphoribulokin 95.0 0.01 2.2E-07 49.5 1.2 99 92-196 77-188 (194)
128 cd02027 APSK Adenosine 5'-phos 94.9 0.014 3E-07 46.9 1.6 104 52-159 1-110 (149)
129 PRK06547 hypothetical protein; 94.8 0.33 7.3E-06 40.1 9.9 16 49-64 14-29 (172)
130 cd02030 NDUO42 NADH:Ubiquinone 94.8 0.064 1.4E-06 45.7 5.7 23 145-167 142-165 (219)
131 PRK07429 phosphoribulokinase; 94.8 0.064 1.4E-06 49.0 6.0 54 143-196 123-186 (327)
132 cd01428 ADK Adenylate kinase ( 94.7 0.37 8.1E-06 39.3 9.8 12 53-64 2-13 (194)
133 PRK00023 cmk cytidylate kinase 94.7 0.77 1.7E-05 39.5 12.1 67 145-211 140-221 (225)
134 PRK00625 shikimate kinase; Pro 94.6 0.5 1.1E-05 39.1 10.4 13 52-64 2-14 (173)
135 PLN02459 probable adenylate ki 94.6 0.23 5E-06 44.1 8.8 46 168-213 202-253 (261)
136 PRK05537 bifunctional sulfate 94.5 0.035 7.6E-07 54.3 3.7 155 50-212 392-563 (568)
137 PRK12337 2-phosphoglycerate ki 94.5 0.71 1.5E-05 44.4 12.3 91 117-211 352-461 (475)
138 COG1162 Predicted GTPases [Gen 94.4 0.0087 1.9E-07 54.1 -0.7 71 50-126 164-277 (301)
139 PRK09825 idnK D-gluconate kina 94.3 0.6 1.3E-05 38.6 10.3 15 50-64 3-17 (176)
140 PF00406 ADK: Adenylate kinase 94.3 0.15 3.2E-06 40.5 6.4 55 124-179 74-136 (151)
141 cd01673 dNK Deoxyribonucleosid 94.2 0.15 3.2E-06 42.0 6.4 13 52-64 1-13 (193)
142 PLN02318 phosphoribulokinase/u 94.0 0.11 2.4E-06 51.4 5.9 71 142-212 174-271 (656)
143 KOG1969|consensus 93.9 0.05 1.1E-06 54.5 3.4 104 50-160 326-474 (877)
144 PF03193 DUF258: Protein of un 93.9 0.021 4.6E-07 47.1 0.7 14 51-64 36-49 (161)
145 PF03668 ATP_bind_2: P-loop AT 93.9 1.3 2.9E-05 39.8 12.2 72 136-211 73-156 (284)
146 COG4619 ABC-type uncharacteriz 93.9 0.047 1E-06 46.2 2.7 44 50-94 29-79 (223)
147 PRK06620 hypothetical protein; 93.8 0.5 1.1E-05 40.4 8.9 14 51-64 45-58 (214)
148 COG1136 SalX ABC-type antimicr 93.7 0.049 1.1E-06 47.4 2.7 40 48-89 29-76 (226)
149 PRK14951 DNA polymerase III su 93.7 0.98 2.1E-05 44.8 12.0 121 52-178 40-195 (618)
150 PRK07003 DNA polymerase III su 93.7 0.73 1.6E-05 46.9 11.0 116 52-178 40-190 (830)
151 PRK14958 DNA polymerase III su 93.5 0.93 2E-05 43.9 11.2 147 52-210 40-226 (509)
152 PRK14960 DNA polymerase III su 93.2 0.97 2.1E-05 45.3 11.0 148 51-210 38-225 (702)
153 KOG3347|consensus 93.2 0.78 1.7E-05 38.0 8.6 140 52-210 9-165 (176)
154 cd01918 HprK_C HprK/P, the bif 93.2 0.049 1.1E-06 44.5 1.7 66 50-132 14-79 (149)
155 COG0237 CoaE Dephospho-CoA kin 93.2 0.47 1E-05 40.4 7.8 83 126-214 107-195 (201)
156 COG3840 ThiQ ABC-type thiamine 93.2 0.054 1.2E-06 46.3 1.9 34 188-221 180-213 (231)
157 TIGR00554 panK_bact pantothena 93.0 0.037 8.1E-07 49.8 0.8 51 4-64 26-76 (290)
158 COG1126 GlnQ ABC-type polar am 93.0 0.05 1.1E-06 47.4 1.5 17 48-64 26-42 (240)
159 COG1660 Predicted P-loop-conta 92.9 1.5 3.2E-05 39.3 10.6 77 136-212 73-158 (286)
160 PF13189 Cytidylate_kin2: Cyti 92.9 0.35 7.7E-06 39.9 6.4 87 106-195 78-177 (179)
161 COG4088 Predicted nucleotide k 92.8 0.78 1.7E-05 40.0 8.5 53 124-178 74-138 (261)
162 PHA00729 NTP-binding motif con 92.8 0.095 2.1E-06 45.6 3.0 43 52-95 19-74 (226)
163 COG5008 PilU Tfp pilus assembl 92.7 0.73 1.6E-05 41.7 8.5 120 52-219 129-258 (375)
164 PRK14961 DNA polymerase III su 92.7 1.1 2.4E-05 41.2 10.1 13 52-64 40-52 (363)
165 COG3839 MalK ABC-type sugar tr 92.6 0.055 1.2E-06 49.8 1.4 19 46-64 25-43 (338)
166 PF13207 AAA_17: AAA domain; P 92.6 0.043 9.2E-07 41.5 0.6 13 52-64 1-13 (121)
167 PRK14957 DNA polymerase III su 92.6 0.98 2.1E-05 44.2 9.9 146 52-209 40-225 (546)
168 COG4185 Uncharacterized protei 92.5 1.9 4.1E-05 36.2 10.1 132 51-194 3-153 (187)
169 TIGR00959 ffh signal recogniti 92.4 1.5 3.2E-05 41.7 10.7 37 188-224 240-277 (428)
170 COG1618 Predicted nucleotide k 92.4 1.3 2.7E-05 37.2 8.9 13 52-64 7-19 (179)
171 PLN02199 shikimate kinase 92.3 1.1 2.3E-05 40.8 9.2 103 50-163 102-213 (303)
172 TIGR01526 nadR_NMN_Atrans nico 92.3 0.27 5.8E-06 44.8 5.4 15 50-64 162-176 (325)
173 PRK12323 DNA polymerase III su 92.2 1.1 2.5E-05 44.8 10.0 121 52-178 40-195 (700)
174 PRK08099 bifunctional DNA-bind 92.2 1.2 2.5E-05 41.9 9.7 156 49-212 218-393 (399)
175 PRK08691 DNA polymerase III su 92.1 1.3 2.8E-05 44.6 10.3 148 52-210 40-226 (709)
176 cd03115 SRP The signal recogni 92.0 0.72 1.6E-05 37.3 7.2 13 52-64 2-14 (173)
177 PRK14964 DNA polymerase III su 91.9 2 4.4E-05 41.5 11.1 147 52-210 37-223 (491)
178 COG3842 PotA ABC-type spermidi 91.8 0.11 2.3E-06 48.2 2.2 29 33-64 17-45 (352)
179 PRK14969 DNA polymerase III su 91.6 1.4 3E-05 42.8 9.8 115 52-178 40-190 (527)
180 COG1116 TauB ABC-type nitrate/ 91.6 0.085 1.8E-06 46.5 1.3 19 46-64 25-43 (248)
181 PRK06645 DNA polymerase III su 91.2 2.3 5E-05 41.3 10.8 99 112-210 108-235 (507)
182 TIGR02881 spore_V_K stage V sp 91.0 0.17 3.6E-06 44.2 2.6 15 50-64 42-56 (261)
183 COG3265 GntK Gluconate kinase 90.8 6.9 0.00015 32.3 11.5 143 56-211 1-159 (161)
184 PF01121 CoaE: Dephospho-CoA k 90.7 0.58 1.3E-05 39.1 5.4 69 125-199 105-179 (180)
185 cd02029 PRK_like Phosphoribulo 90.7 0.33 7.1E-06 43.5 4.1 13 52-64 1-13 (277)
186 PRK15453 phosphoribulokinase; 90.7 0.16 3.6E-06 45.7 2.2 14 51-64 6-19 (290)
187 PLN03025 replication factor C 90.7 2.2 4.8E-05 38.3 9.6 13 52-64 36-48 (319)
188 cd01895 EngA2 EngA2 subfamily. 90.6 0.83 1.8E-05 35.5 6.1 13 52-64 4-16 (174)
189 COG1125 OpuBA ABC-type proline 90.5 0.12 2.7E-06 46.1 1.3 18 47-64 24-41 (309)
190 PRK07764 DNA polymerase III su 90.3 4.2 9.1E-05 41.8 12.1 96 113-209 101-226 (824)
191 KOG3062|consensus 90.3 0.48 1E-05 41.7 4.6 52 109-163 59-119 (281)
192 cd00820 PEPCK_HprK Phosphoenol 90.1 0.16 3.4E-06 39.2 1.4 15 50-64 15-29 (107)
193 CHL00181 cbbX CbbX; Provisiona 89.8 3.5 7.5E-05 36.9 10.0 15 50-64 59-73 (287)
194 TIGR00157 ribosome small subun 89.8 0.17 3.7E-06 44.1 1.6 15 50-64 120-134 (245)
195 COG2256 MGS1 ATPase related to 89.8 1.8 3.9E-05 40.9 8.3 65 113-179 85-176 (436)
196 cd02028 UMPK_like Uridine mono 89.7 0.61 1.3E-05 38.5 4.8 13 52-64 1-13 (179)
197 PRK05800 cobU adenosylcobinami 89.6 0.65 1.4E-05 38.3 4.8 13 52-64 3-15 (170)
198 PF01926 MMR_HSR1: 50S ribosom 89.6 0.12 2.6E-06 38.9 0.4 12 53-64 2-13 (116)
199 COG0529 CysC Adenylylsulfate k 89.5 5.6 0.00012 33.8 10.2 83 122-212 93-192 (197)
200 TIGR03575 selen_PSTK_euk L-ser 89.4 2.9 6.4E-05 38.5 9.4 13 52-64 1-13 (340)
201 COG1703 ArgK Putative periplas 89.2 5.6 0.00012 36.3 10.8 150 47-221 48-230 (323)
202 PF01745 IPT: Isopentenyl tran 88.9 0.22 4.8E-06 43.3 1.6 33 52-84 3-61 (233)
203 COG0572 Udk Uridine kinase [Nu 88.9 0.67 1.5E-05 40.2 4.5 14 51-64 9-22 (218)
204 PRK14088 dnaA chromosomal repl 88.8 1.9 4E-05 40.9 7.9 106 51-161 131-270 (440)
205 PF09439 SRPRB: Signal recogni 88.7 0.17 3.6E-06 42.6 0.6 14 51-64 4-17 (181)
206 PRK05896 DNA polymerase III su 88.6 5.2 0.00011 39.7 11.0 14 51-64 39-52 (605)
207 PRK12289 GTPase RsgA; Reviewed 88.5 0.21 4.6E-06 46.1 1.3 14 51-64 173-186 (352)
208 PRK14965 DNA polymerase III su 88.3 3.8 8.3E-05 40.2 9.9 115 52-178 40-190 (576)
209 PRK14949 DNA polymerase III su 88.3 4.6 0.0001 41.9 10.7 13 52-64 40-52 (944)
210 PRK07994 DNA polymerase III su 88.2 3.6 7.8E-05 41.1 9.7 116 52-178 40-190 (647)
211 PRK10867 signal recognition pa 88.2 7.7 0.00017 36.9 11.5 37 188-224 241-278 (433)
212 PRK09111 DNA polymerase III su 87.9 5.5 0.00012 39.5 10.7 13 52-64 48-60 (598)
213 PRK14086 dnaA chromosomal repl 87.8 2 4.3E-05 42.7 7.6 105 51-161 315-453 (617)
214 KOG1970|consensus 87.8 0.32 6.8E-06 47.6 2.0 58 50-113 110-188 (634)
215 PRK14948 DNA polymerase III su 87.8 4.6 9.9E-05 40.2 10.1 13 52-64 40-52 (620)
216 PF04548 AIG1: AIG1 family; I 87.7 0.18 3.8E-06 42.8 0.2 34 53-86 3-56 (212)
217 PF13238 AAA_18: AAA domain; P 87.6 0.21 4.5E-06 37.6 0.5 12 53-64 1-12 (129)
218 smart00382 AAA ATPases associa 87.5 0.26 5.7E-06 36.4 1.0 14 51-64 3-16 (148)
219 TIGR00362 DnaA chromosomal rep 87.4 5.9 0.00013 36.8 10.2 107 51-161 137-275 (405)
220 PRK14956 DNA polymerase III su 87.3 4.7 0.0001 38.9 9.6 86 125-210 123-228 (484)
221 PRK07399 DNA polymerase III su 87.1 2.9 6.2E-05 37.9 7.7 66 112-178 104-194 (314)
222 cd02019 NK Nucleoside/nucleoti 86.9 0.28 6.2E-06 34.1 0.9 13 52-64 1-13 (69)
223 TIGR03238 dnd_assoc_3 dnd syst 86.9 0.3 6.5E-06 47.1 1.3 18 47-64 29-46 (504)
224 PRK05428 HPr kinase/phosphoryl 86.6 0.48 1.1E-05 43.1 2.4 65 51-132 147-212 (308)
225 PRK05439 pantothenate kinase; 86.4 0.64 1.4E-05 42.3 3.1 15 50-64 86-100 (311)
226 cd00009 AAA The AAA+ (ATPases 86.3 0.39 8.5E-06 35.9 1.4 15 50-64 19-33 (151)
227 COG3638 ABC-type phosphate/pho 86.3 0.36 7.9E-06 42.6 1.4 18 47-64 27-44 (258)
228 PTZ00265 multidrug resistance 86.2 0.41 8.9E-06 51.9 2.0 56 67-123 1270-1334(1466)
229 cd01131 PilT Pilus retraction 86.1 0.31 6.7E-06 40.9 0.8 13 52-64 3-15 (198)
230 PF13401 AAA_22: AAA domain; P 86.1 0.27 5.9E-06 37.3 0.4 15 50-64 4-18 (131)
231 COG1118 CysA ABC-type sulfate/ 85.9 0.45 9.7E-06 43.5 1.8 19 46-64 24-42 (345)
232 PRK00149 dnaA chromosomal repl 85.7 3.7 7.9E-05 38.8 8.0 44 118-161 238-287 (450)
233 PRK12288 GTPase RsgA; Reviewed 85.6 0.35 7.6E-06 44.5 1.0 14 51-64 206-219 (347)
234 PRK14962 DNA polymerase III su 85.6 6.4 0.00014 37.8 9.6 13 52-64 38-50 (472)
235 PF00004 AAA: ATPase family as 85.5 0.32 7E-06 36.6 0.6 12 53-64 1-12 (132)
236 PRK08451 DNA polymerase III su 85.3 9.4 0.0002 37.4 10.7 13 52-64 38-50 (535)
237 cd01849 YlqF_related_GTPase Yl 85.3 0.37 8.1E-06 38.4 0.9 27 50-76 100-143 (155)
238 PF13555 AAA_29: P-loop contai 85.3 0.38 8.3E-06 33.5 0.8 13 52-64 25-37 (62)
239 PRK06647 DNA polymerase III su 85.2 8.5 0.00018 37.8 10.4 13 52-64 40-52 (563)
240 KOG3877|consensus 85.2 2.1 4.6E-05 38.9 5.6 58 114-171 161-244 (393)
241 PRK14950 DNA polymerase III su 84.7 11 0.00024 37.0 11.0 13 52-64 40-52 (585)
242 cd04155 Arl3 Arl3 subfamily. 84.6 0.81 1.8E-05 36.3 2.6 14 51-64 15-28 (173)
243 PF02223 Thymidylate_kin: Thym 84.5 13 0.00028 30.2 9.9 53 115-167 71-141 (186)
244 COG4136 ABC-type uncharacteriz 84.2 0.52 1.1E-05 39.4 1.3 15 50-64 28-42 (213)
245 PF07728 AAA_5: AAA domain (dy 84.2 0.4 8.7E-06 37.2 0.6 13 52-64 1-13 (139)
246 PRK06305 DNA polymerase III su 84.1 8.9 0.00019 36.5 9.8 13 52-64 41-53 (451)
247 PF05729 NACHT: NACHT domain 84.1 0.55 1.2E-05 36.7 1.4 14 51-64 1-14 (166)
248 cd01855 YqeH YqeH. YqeH is an 84.1 0.47 1E-05 39.0 1.0 14 51-64 128-141 (190)
249 PRK13951 bifunctional shikimat 84.1 7.3 0.00016 37.6 9.2 13 52-64 2-14 (488)
250 PRK05563 DNA polymerase III su 84.0 8 0.00017 37.9 9.6 14 51-64 39-52 (559)
251 TIGR00678 holB DNA polymerase 83.9 8.5 0.00018 31.5 8.5 13 52-64 16-28 (188)
252 COG2884 FtsE Predicted ATPase 83.9 0.49 1.1E-05 40.7 1.0 15 50-64 28-42 (223)
253 cd03238 ABC_UvrA The excision 83.8 0.5 1.1E-05 39.2 1.1 15 50-64 21-35 (176)
254 COG1117 PstB ABC-type phosphat 83.8 0.52 1.1E-05 41.2 1.2 15 50-64 33-47 (253)
255 PF00448 SRP54: SRP54-type pro 83.7 0.4 8.7E-06 40.5 0.4 35 189-223 142-177 (196)
256 cd01852 AIG1 AIG1 (avrRpt2-ind 83.4 0.78 1.7E-05 37.9 2.1 12 53-64 3-14 (196)
257 PF12775 AAA_7: P-loop contain 83.4 0.47 1E-05 42.2 0.8 16 49-64 32-47 (272)
258 KOG0991|consensus 83.2 4 8.7E-05 36.4 6.4 48 164-211 170-221 (333)
259 COG1484 DnaC DNA replication p 83.1 2.1 4.5E-05 37.6 4.7 94 22-130 58-174 (254)
260 PRK14952 DNA polymerase III su 83.1 16 0.00035 36.1 11.3 97 113-210 99-225 (584)
261 TIGR02857 CydD thiol reductant 83.0 0.86 1.9E-05 43.6 2.5 46 47-93 345-397 (529)
262 PF13191 AAA_16: AAA ATPase do 83.0 0.44 9.6E-06 38.2 0.4 17 48-64 22-38 (185)
263 PF00005 ABC_tran: ABC transpo 83.0 0.52 1.1E-05 36.3 0.8 15 50-64 11-25 (137)
264 cd01897 NOG NOG1 is a nucleola 82.6 0.7 1.5E-05 36.4 1.4 13 52-64 2-14 (168)
265 COG4525 TauB ABC-type taurine 82.6 0.65 1.4E-05 40.3 1.3 15 50-64 31-45 (259)
266 cd03283 ABC_MutS-like MutS-lik 82.6 0.72 1.6E-05 38.9 1.6 15 50-64 25-39 (199)
267 COG1132 MdlB ABC-type multidru 82.4 0.59 1.3E-05 45.2 1.1 74 49-123 354-441 (567)
268 TIGR02639 ClpA ATP-dependent C 82.3 11 0.00025 37.9 10.2 14 51-64 204-217 (731)
269 PRK13342 recombination factor 82.2 16 0.00034 34.1 10.6 13 52-64 38-50 (413)
270 PRK05707 DNA polymerase III su 82.2 12 0.00027 34.0 9.6 13 52-64 24-36 (328)
271 cd03227 ABC_Class2 ABC-type Cl 82.1 0.77 1.7E-05 37.1 1.5 31 32-64 5-35 (162)
272 TIGR00679 hpr-ser Hpr(Ser) kin 82.1 0.6 1.3E-05 42.4 0.9 65 51-132 147-212 (304)
273 COG2812 DnaX DNA polymerase II 82.0 5.9 0.00013 38.6 7.7 116 53-179 41-191 (515)
274 KOG1533|consensus 81.7 0.74 1.6E-05 40.8 1.3 17 53-69 5-31 (290)
275 PRK14955 DNA polymerase III su 81.5 9.8 0.00021 35.4 8.8 13 52-64 40-52 (397)
276 cd03271 ABC_UvrA_II The excisi 81.4 0.77 1.7E-05 40.6 1.4 15 50-64 21-35 (261)
277 cd04105 SR_beta Signal recogni 81.3 3.7 8E-05 34.4 5.4 12 53-64 3-14 (203)
278 cd01896 DRG The developmentall 81.1 0.84 1.8E-05 39.3 1.5 12 53-64 3-14 (233)
279 TIGR00960 3a0501s02 Type II (G 81.1 0.79 1.7E-05 38.4 1.3 17 48-64 27-43 (216)
280 PRK15177 Vi polysaccharide exp 81.0 0.83 1.8E-05 38.6 1.4 16 49-64 12-27 (213)
281 PRK11131 ATP-dependent RNA hel 80.8 0.29 6.4E-06 52.1 -1.7 39 26-64 65-103 (1294)
282 PF13245 AAA_19: Part of AAA d 80.8 0.85 1.8E-05 32.7 1.2 15 50-64 10-24 (76)
283 TIGR01166 cbiO cobalt transpor 80.6 0.84 1.8E-05 37.5 1.3 16 49-64 17-32 (190)
284 cd03270 ABC_UvrA_I The excisio 80.6 0.75 1.6E-05 39.3 1.0 18 48-65 19-36 (226)
285 cd04164 trmE TrmE (MnmE, ThdF, 80.6 0.78 1.7E-05 35.2 1.0 13 52-64 3-15 (157)
286 PTZ00202 tuzin; Provisional 80.4 3.1 6.7E-05 40.3 5.1 15 50-64 286-300 (550)
287 cd04163 Era Era subfamily. Er 80.4 0.77 1.7E-05 35.2 0.9 14 51-64 4-17 (168)
288 cd03263 ABC_subfamily_A The AB 80.4 0.85 1.8E-05 38.3 1.3 17 48-64 26-42 (220)
289 cd03292 ABC_FtsE_transporter F 80.2 0.87 1.9E-05 38.0 1.3 16 49-64 26-41 (214)
290 COG0470 HolB ATPase involved i 80.1 7.5 0.00016 34.1 7.3 13 52-64 26-38 (325)
291 PRK14971 DNA polymerase III su 80.1 14 0.00031 36.6 9.8 14 51-64 40-53 (614)
292 cd00879 Sar1 Sar1 subfamily. 80.1 1.1 2.5E-05 36.2 1.9 14 51-64 20-33 (190)
293 TIGR02315 ABC_phnC phosphonate 80.0 0.9 1.9E-05 38.7 1.3 17 48-64 26-42 (243)
294 cd01130 VirB11-like_ATPase Typ 80.0 0.83 1.8E-05 37.7 1.1 15 50-64 25-39 (186)
295 PF07724 AAA_2: AAA domain (Cd 79.9 0.7 1.5E-05 38.1 0.6 13 52-64 5-17 (171)
296 cd03224 ABC_TM1139_LivF_branch 79.8 0.87 1.9E-05 38.2 1.1 17 48-64 24-40 (222)
297 cd01120 RecA-like_NTPases RecA 79.7 0.85 1.8E-05 35.2 1.0 13 52-64 1-13 (165)
298 TIGR02397 dnaX_nterm DNA polym 79.7 18 0.00039 32.3 9.7 13 52-64 38-50 (355)
299 TIGR02673 FtsE cell division A 79.5 0.95 2.1E-05 37.8 1.3 17 48-64 26-42 (214)
300 COG0645 Predicted kinase [Gene 79.5 32 0.00069 28.8 10.2 14 51-64 2-15 (170)
301 TIGR03420 DnaA_homol_Hda DnaA 79.4 1.1 2.3E-05 37.6 1.5 16 49-64 37-52 (226)
302 cd03259 ABC_Carb_Solutes_like 79.3 0.97 2.1E-05 37.8 1.3 17 48-64 24-40 (213)
303 cd03256 ABC_PhnC_transporter A 79.3 0.98 2.1E-05 38.4 1.3 17 48-64 25-41 (241)
304 cd03225 ABC_cobalt_CbiO_domain 79.2 0.97 2.1E-05 37.7 1.2 16 49-64 26-41 (211)
305 cd01854 YjeQ_engC YjeQ/EngC. 79.2 0.93 2E-05 40.4 1.2 14 51-64 162-175 (287)
306 cd03226 ABC_cobalt_CbiO_domain 79.2 0.97 2.1E-05 37.6 1.2 16 49-64 25-40 (205)
307 cd03255 ABC_MJ0796_Lo1CDE_FtsE 79.2 0.98 2.1E-05 37.8 1.3 16 49-64 29-44 (218)
308 cd03262 ABC_HisP_GlnQ_permease 79.2 1 2.2E-05 37.6 1.3 17 48-64 24-40 (213)
309 PF04665 Pox_A32: Poxvirus A32 79.1 0.91 2E-05 39.9 1.1 13 52-64 15-27 (241)
310 cd03235 ABC_Metallic_Cations A 79.1 0.99 2.1E-05 37.7 1.2 17 48-64 23-39 (213)
311 cd03219 ABC_Mj1267_LivG_branch 79.1 0.97 2.1E-05 38.3 1.2 17 48-64 24-40 (236)
312 cd03273 ABC_SMC2_euk Eukaryoti 79.0 1 2.2E-05 38.9 1.4 15 50-64 25-39 (251)
313 cd03230 ABC_DR_subfamily_A Thi 78.9 1 2.2E-05 36.6 1.2 17 48-64 24-40 (173)
314 cd03261 ABC_Org_Solvent_Resist 78.9 1 2.2E-05 38.3 1.3 17 48-64 24-40 (235)
315 cd03269 ABC_putative_ATPase Th 78.9 1 2.2E-05 37.6 1.3 17 48-64 24-40 (210)
316 PRK08727 hypothetical protein; 78.8 0.91 2E-05 39.1 0.9 14 51-64 42-55 (233)
317 cd03265 ABC_DrrA DrrA is the A 78.6 1.1 2.3E-05 37.8 1.3 16 49-64 25-40 (220)
318 cd04159 Arl10_like Arl10-like 78.5 0.98 2.1E-05 34.5 1.0 12 53-64 2-13 (159)
319 PF04670 Gtr1_RagA: Gtr1/RagA 78.4 0.84 1.8E-05 39.8 0.6 12 53-64 2-13 (232)
320 cd03258 ABC_MetN_methionine_tr 78.4 1.1 2.3E-05 38.0 1.3 17 48-64 29-45 (233)
321 cd03260 ABC_PstB_phosphate_tra 78.3 1.1 2.4E-05 37.9 1.3 17 48-64 24-40 (227)
322 PRK14954 DNA polymerase III su 78.3 17 0.00036 36.3 9.7 13 52-64 40-52 (620)
323 COG1127 Ttg2A ABC-type transpo 78.2 1.6 3.4E-05 38.7 2.2 41 50-91 34-81 (263)
324 cd03257 ABC_NikE_OppD_transpor 78.2 1.1 2.4E-05 37.7 1.2 17 48-64 29-45 (228)
325 PRK13540 cytochrome c biogenes 78.1 1.1 2.5E-05 37.2 1.3 17 48-64 25-41 (200)
326 cd03293 ABC_NrtD_SsuB_transpor 78.1 1 2.3E-05 37.8 1.1 16 49-64 29-44 (220)
327 TIGR00993 3a0901s04IAP86 chlor 78.0 0.79 1.7E-05 46.0 0.4 36 51-86 119-173 (763)
328 PRK08058 DNA polymerase III su 78.0 15 0.00033 33.3 8.7 13 52-64 30-42 (329)
329 cd03268 ABC_BcrA_bacitracin_re 78.0 1.1 2.4E-05 37.3 1.3 17 48-64 24-40 (208)
330 COG1419 FlhF Flagellar GTP-bin 77.9 1.1 2.3E-05 42.3 1.2 15 50-64 203-217 (407)
331 PF03215 Rad17: Rad17 cell cyc 77.7 1.1 2.5E-05 43.4 1.4 16 49-64 44-59 (519)
332 cd02024 NRK1 Nicotinamide ribo 77.6 1 2.2E-05 38.0 0.8 13 52-64 1-13 (187)
333 cd03222 ABC_RNaseL_inhibitor T 77.5 1.1 2.4E-05 37.2 1.0 16 49-64 24-39 (177)
334 PRK08084 DNA replication initi 77.5 1.2 2.5E-05 38.4 1.3 14 51-64 46-59 (235)
335 TIGR01978 sufC FeS assembly AT 77.4 1.3 2.7E-05 37.7 1.4 17 48-64 24-40 (243)
336 PTZ00088 adenylate kinase 1; P 77.3 1.1 2.3E-05 38.9 1.0 12 53-64 9-20 (229)
337 cd03246 ABCC_Protease_Secretio 77.3 1.2 2.7E-05 36.1 1.3 16 49-64 27-42 (173)
338 PRK03003 GTP-binding protein D 77.3 6.4 0.00014 37.5 6.3 35 50-84 211-264 (472)
339 TIGR02211 LolD_lipo_ex lipopro 77.3 1.2 2.6E-05 37.4 1.3 16 49-64 30-45 (221)
340 PRK09435 membrane ATPase/prote 77.3 48 0.001 30.4 11.8 15 50-64 56-70 (332)
341 PRK11629 lolD lipoprotein tran 77.2 1.2 2.6E-05 37.9 1.2 16 49-64 34-49 (233)
342 cd01853 Toc34_like Toc34-like 77.2 0.74 1.6E-05 40.4 -0.1 19 46-64 27-45 (249)
343 COG4161 ArtP ABC-type arginine 77.2 1.6 3.4E-05 36.9 1.9 37 47-83 25-68 (242)
344 cd03232 ABC_PDR_domain2 The pl 77.2 1.2 2.6E-05 36.8 1.2 17 48-64 31-47 (192)
345 COG4181 Predicted ABC-type tra 77.1 1.3 2.8E-05 37.8 1.3 15 50-64 36-50 (228)
346 PF08477 Miro: Miro-like prote 77.1 0.99 2.1E-05 33.6 0.6 12 53-64 2-13 (119)
347 cd03301 ABC_MalK_N The N-termi 77.0 1.3 2.7E-05 37.0 1.3 17 48-64 24-40 (213)
348 cd03214 ABC_Iron-Siderophores_ 77.0 1.3 2.8E-05 36.3 1.3 17 48-64 23-39 (180)
349 TIGR03499 FlhF flagellar biosy 76.9 1.3 2.8E-05 39.4 1.4 16 49-64 193-208 (282)
350 cd01898 Obg Obg subfamily. Th 76.9 1.3 2.8E-05 34.8 1.3 12 53-64 3-14 (170)
351 PRK10247 putative ABC transpor 76.8 1.3 2.8E-05 37.6 1.3 17 48-64 31-47 (225)
352 PRK08903 DnaA regulatory inact 76.6 1.3 2.7E-05 37.5 1.2 15 50-64 42-56 (227)
353 cd02025 PanK Pantothenate kina 76.6 1.1 2.3E-05 38.5 0.7 13 52-64 1-13 (220)
354 TIGR03864 PQQ_ABC_ATP ABC tran 76.5 1.3 2.8E-05 37.7 1.3 16 49-64 26-41 (236)
355 TIGR01967 DEAH_box_HrpA ATP-de 76.5 0.47 1E-05 50.7 -1.7 38 27-64 59-96 (1283)
356 cd03245 ABCC_bacteriocin_expor 76.4 1.3 2.9E-05 37.1 1.3 17 48-64 28-44 (220)
357 COG3954 PrkB Phosphoribulokina 76.4 1.5 3.3E-05 37.9 1.6 71 52-123 7-89 (289)
358 TIGR01189 ccmA heme ABC export 76.4 1.3 2.9E-05 36.6 1.3 17 48-64 24-40 (198)
359 PRK07940 DNA polymerase III su 76.4 18 0.00039 33.9 8.9 13 52-64 38-50 (394)
360 PRK14959 DNA polymerase III su 76.3 31 0.00068 34.5 10.9 13 52-64 40-52 (624)
361 cd03216 ABC_Carb_Monos_I This 76.3 1.3 2.9E-05 35.7 1.2 17 48-64 24-40 (163)
362 TIGR00436 era GTP-binding prot 76.3 1.4 2.9E-05 38.7 1.3 13 52-64 2-14 (270)
363 PRK11124 artP arginine transpo 76.2 1.3 2.9E-05 37.7 1.3 17 48-64 26-42 (242)
364 PRK10584 putative ABC transpor 76.1 1.4 3E-05 37.3 1.3 16 49-64 35-50 (228)
365 PRK13539 cytochrome c biogenes 76.1 1.4 3E-05 36.9 1.3 17 48-64 26-42 (207)
366 TIGR02868 CydC thiol reductant 76.1 1.2 2.6E-05 42.6 1.1 17 48-64 359-375 (529)
367 PRK11432 fbpC ferric transport 76.1 1.3 2.9E-05 40.7 1.2 17 48-64 30-46 (351)
368 TIGR01184 ntrCD nitrate transp 76.0 1.4 2.9E-05 37.6 1.2 16 49-64 10-25 (230)
369 cd03278 ABC_SMC_barmotin Barmo 75.9 1.6 3.5E-05 36.6 1.6 13 52-64 24-36 (197)
370 PRK14247 phosphate ABC transpo 75.8 1.4 3E-05 37.8 1.3 17 48-64 27-43 (250)
371 PLN00020 ribulose bisphosphate 75.8 1.7 3.8E-05 40.9 1.9 63 50-131 148-218 (413)
372 PRK00089 era GTPase Era; Revie 75.8 1.2 2.6E-05 39.3 0.8 14 51-64 6-19 (292)
373 PRK10908 cell division protein 75.7 1.4 3.1E-05 37.1 1.3 17 48-64 26-42 (222)
374 cd03266 ABC_NatA_sodium_export 75.7 1.4 3.1E-05 36.8 1.3 16 49-64 30-45 (218)
375 TIGR03608 L_ocin_972_ABC putat 75.6 1.4 3E-05 36.5 1.1 16 49-64 23-38 (206)
376 cd03296 ABC_CysA_sulfate_impor 75.6 1.4 3.1E-05 37.5 1.3 16 49-64 27-42 (239)
377 cd03221 ABCF_EF-3 ABCF_EF-3 E 75.5 1.5 3.3E-05 34.8 1.3 18 47-64 23-40 (144)
378 TIGR03410 urea_trans_UrtE urea 75.5 1.5 3.2E-05 37.2 1.3 17 48-64 24-40 (230)
379 PF13177 DNA_pol3_delta2: DNA 75.5 9.2 0.0002 31.0 6.0 55 111-165 81-152 (162)
380 cd03298 ABC_ThiQ_thiamine_tran 75.5 1.5 3.2E-05 36.6 1.3 17 48-64 22-38 (211)
381 cd01861 Rab6 Rab6 subfamily. 75.4 2.1 4.4E-05 33.3 2.1 12 53-64 3-14 (161)
382 PRK13648 cbiO cobalt transport 75.4 1.4 3.1E-05 38.4 1.3 17 48-64 33-49 (269)
383 TIGR03265 PhnT2 putative 2-ami 75.4 1.4 3.1E-05 40.5 1.3 17 48-64 28-44 (353)
384 KOG3327|consensus 75.4 52 0.0011 28.2 11.9 110 105-217 71-201 (208)
385 cd03243 ABC_MutS_homologs The 75.3 1.7 3.6E-05 36.3 1.6 15 50-64 29-43 (202)
386 PRK11248 tauB taurine transpor 75.2 1.5 3.2E-05 38.1 1.3 16 49-64 26-41 (255)
387 cd03223 ABCD_peroxisomal_ALDP 75.2 1.5 3.3E-05 35.4 1.3 17 48-64 25-41 (166)
388 TIGR02323 CP_lyasePhnK phospho 75.1 1.4 3.1E-05 37.8 1.1 16 49-64 28-43 (253)
389 cd03295 ABC_OpuCA_Osmoprotecti 75.1 1.5 3.3E-05 37.5 1.3 16 49-64 26-41 (242)
390 cd03254 ABCC_Glucan_exporter_l 75.1 1.5 3.3E-05 37.0 1.3 17 48-64 27-43 (229)
391 cd03218 ABC_YhbG The ABC trans 75.1 1.5 3.2E-05 37.1 1.2 17 48-64 24-40 (232)
392 PRK10895 lipopolysaccharide AB 75.0 1.5 3.2E-05 37.4 1.3 17 48-64 27-43 (241)
393 PRK10744 pstB phosphate transp 75.0 1.5 3.2E-05 38.1 1.2 17 48-64 37-53 (260)
394 TIGR01420 pilT_fam pilus retra 75.0 1.4 2.9E-05 40.3 1.0 15 50-64 122-136 (343)
395 TIGR02324 CP_lyasePhnL phospho 75.0 1.5 3.3E-05 36.9 1.3 17 48-64 32-48 (224)
396 PRK14267 phosphate ABC transpo 75.0 1.5 3.3E-05 37.7 1.3 17 48-64 28-44 (253)
397 TIGR02524 dot_icm_DotB Dot/Icm 75.0 1.4 3E-05 40.8 1.0 15 50-64 134-148 (358)
398 TIGR03015 pepcterm_ATPase puta 74.9 1.3 2.8E-05 38.1 0.8 14 51-64 44-57 (269)
399 TIGR02880 cbbX_cfxQ probable R 74.9 2.8 6.1E-05 37.3 3.0 15 50-64 58-72 (284)
400 PRK09183 transposase/IS protei 74.9 1.5 3.3E-05 38.5 1.3 15 50-64 102-116 (259)
401 PRK14242 phosphate transporter 74.9 1.5 3.2E-05 37.8 1.2 17 48-64 30-46 (253)
402 cd03264 ABC_drug_resistance_li 74.9 1.3 2.9E-05 36.9 0.9 13 52-64 27-39 (211)
403 PRK09452 potA putrescine/sperm 74.8 1.4 3.1E-05 40.9 1.1 17 48-64 38-54 (375)
404 cd03234 ABCG_White The White s 74.7 1.6 3.4E-05 37.0 1.3 16 49-64 32-47 (226)
405 PRK14722 flhF flagellar biosyn 74.6 2 4.2E-05 40.2 2.0 17 48-64 135-151 (374)
406 PRK13638 cbiO cobalt transport 74.6 1.5 3.3E-05 38.2 1.2 16 49-64 26-41 (271)
407 PRK14250 phosphate ABC transpo 74.5 1.6 3.4E-05 37.4 1.3 16 49-64 28-43 (241)
408 PRK11650 ugpC glycerol-3-phosp 74.5 1.5 3.3E-05 40.4 1.2 17 48-64 28-44 (356)
409 cd00876 Ras Ras family. The R 74.4 1.4 2.9E-05 34.0 0.8 12 53-64 2-13 (160)
410 PRK14241 phosphate transporter 74.4 1.5 3.3E-05 37.9 1.2 17 48-64 28-44 (258)
411 COG1124 DppF ABC-type dipeptid 74.4 1.6 3.4E-05 38.6 1.2 27 35-64 21-47 (252)
412 PRK14240 phosphate transporter 74.3 1.6 3.5E-05 37.4 1.3 17 48-64 27-43 (250)
413 PRK14239 phosphate transporter 74.3 1.6 3.5E-05 37.4 1.2 16 49-64 30-45 (252)
414 cd03229 ABC_Class3 This class 74.2 1.7 3.6E-05 35.5 1.3 16 49-64 25-40 (178)
415 PRK11247 ssuB aliphatic sulfon 74.2 1.6 3.5E-05 38.2 1.3 16 49-64 37-52 (257)
416 PRK06893 DNA replication initi 74.2 1.5 3.2E-05 37.6 1.0 14 51-64 40-53 (229)
417 PRK13543 cytochrome c biogenes 74.1 1.7 3.6E-05 36.6 1.3 17 48-64 35-51 (214)
418 TIGR03005 ectoine_ehuA ectoine 74.1 1.6 3.6E-05 37.5 1.3 17 48-64 24-40 (252)
419 PRK11144 modC molybdate transp 74.1 1.6 3.5E-05 40.0 1.3 17 48-64 22-38 (352)
420 PRK13632 cbiO cobalt transport 74.1 1.6 3.5E-05 38.1 1.3 17 48-64 33-49 (271)
421 cd03215 ABC_Carb_Monos_II This 74.0 1.7 3.6E-05 35.7 1.2 17 48-64 24-40 (182)
422 PRK07993 DNA polymerase III su 74.0 36 0.00079 31.1 10.1 13 52-64 26-38 (334)
423 cd03233 ABC_PDR_domain1 The pl 74.0 1.6 3.6E-05 36.4 1.2 16 49-64 32-47 (202)
424 cd03250 ABCC_MRP_domain1 Domai 73.9 1.8 3.9E-05 35.9 1.5 17 48-64 29-45 (204)
425 PRK11264 putative amino-acid A 73.9 1.7 3.6E-05 37.3 1.3 16 49-64 28-43 (250)
426 PRK13538 cytochrome c biogenes 73.9 1.7 3.6E-05 36.2 1.3 17 48-64 25-41 (204)
427 TIGR00972 3a0107s01c2 phosphat 73.9 1.7 3.6E-05 37.3 1.3 17 48-64 25-41 (247)
428 cd04169 RF3 RF3 subfamily. Pe 73.9 24 0.00052 31.0 8.7 14 51-64 3-16 (267)
429 PRK15056 manganese/iron transp 73.8 1.7 3.6E-05 38.1 1.3 16 49-64 32-47 (272)
430 cd03290 ABCC_SUR1_N The SUR do 73.7 1.7 3.7E-05 36.5 1.3 17 48-64 25-41 (218)
431 TIGR01186 proV glycine betaine 73.7 1.5 3.2E-05 40.7 0.9 16 49-64 18-33 (363)
432 PRK10851 sulfate/thiosulfate t 73.7 1.6 3.6E-05 40.1 1.2 17 48-64 26-42 (353)
433 PRK14269 phosphate ABC transpo 73.7 1.7 3.7E-05 37.3 1.3 16 49-64 27-42 (246)
434 TIGR03771 anch_rpt_ABC anchore 73.7 1.7 3.7E-05 36.8 1.2 16 49-64 5-20 (223)
435 cd03237 ABC_RNaseL_inhibitor_d 73.6 1.7 3.7E-05 37.7 1.3 16 49-64 24-39 (246)
436 PRK14963 DNA polymerase III su 73.6 9.5 0.00021 37.0 6.5 13 52-64 38-50 (504)
437 PRK13541 cytochrome c biogenes 73.5 1.7 3.8E-05 35.9 1.3 16 49-64 25-40 (195)
438 PRK11607 potG putrescine trans 73.5 1.6 3.6E-05 40.5 1.2 16 49-64 44-59 (377)
439 PRK05642 DNA replication initi 73.4 1.5 3.3E-05 37.7 0.9 14 51-64 46-59 (234)
440 COG4608 AppF ABC-type oligopep 73.4 1.3 2.7E-05 39.6 0.4 29 36-64 25-53 (268)
441 cd00046 DEXDc DEAD-like helica 73.4 2 4.2E-05 31.6 1.4 13 52-64 2-14 (144)
442 cd03279 ABC_sbcCD SbcCD and ot 73.4 1.8 3.8E-05 36.5 1.3 15 50-64 28-42 (213)
443 PRK09493 glnQ glutamine ABC tr 73.4 1.8 3.8E-05 37.0 1.3 17 48-64 25-41 (240)
444 COG0444 DppD ABC-type dipeptid 73.3 1.8 3.8E-05 39.6 1.3 25 40-64 21-45 (316)
445 TIGR03740 galliderm_ABC gallid 73.3 1.8 3.8E-05 36.5 1.3 17 48-64 24-40 (223)
446 COG4778 PhnL ABC-type phosphon 73.3 1.8 3.9E-05 36.9 1.3 17 48-64 35-51 (235)
447 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 73.3 1.8 3.9E-05 36.8 1.3 18 47-64 45-62 (224)
448 cd03228 ABCC_MRP_Like The MRP 73.3 1.8 4E-05 35.0 1.3 16 49-64 27-42 (171)
449 TIGR03598 GTPase_YsxC ribosome 73.2 1.9 4.2E-05 34.8 1.5 29 36-64 3-32 (179)
450 TIGR02770 nickel_nikD nickel i 73.2 1.8 3.9E-05 36.8 1.3 16 49-64 11-26 (230)
451 cd01858 NGP_1 NGP-1. Autoanti 73.1 1.7 3.6E-05 34.6 1.0 14 51-64 103-116 (157)
452 PRK11300 livG leucine/isoleuci 73.1 1.7 3.7E-05 37.4 1.1 16 49-64 30-45 (255)
453 PRK11614 livF leucine/isoleuci 73.0 1.7 3.8E-05 36.9 1.2 17 48-64 29-45 (237)
454 cd03252 ABCC_Hemolysin The ABC 73.0 1.8 3.9E-05 36.8 1.2 17 48-64 26-42 (237)
455 COG1219 ClpX ATP-dependent pro 73.0 1.7 3.7E-05 40.2 1.1 78 50-139 97-195 (408)
456 TIGR01241 FtsH_fam ATP-depende 72.9 4.2 9.1E-05 38.9 3.9 37 52-92 90-126 (495)
457 KOG0164|consensus 72.9 1.4 2.9E-05 44.5 0.5 29 51-79 95-133 (1001)
458 cd03294 ABC_Pro_Gly_Bertaine T 72.9 1.8 3.9E-05 37.8 1.3 17 48-64 48-64 (269)
459 PRK14274 phosphate ABC transpo 72.9 1.8 3.9E-05 37.4 1.2 16 49-64 37-52 (259)
460 COG2229 Predicted GTPase [Gene 72.9 37 0.00081 28.8 9.0 113 52-178 12-149 (187)
461 PRK14251 phosphate ABC transpo 72.8 1.8 4E-05 37.1 1.3 17 48-64 28-44 (251)
462 PRK14237 phosphate transporter 72.8 1.8 4E-05 37.7 1.3 17 48-64 44-60 (267)
463 TIGR02769 nickel_nikE nickel i 72.8 1.8 4E-05 37.6 1.3 17 48-64 35-51 (265)
464 KOG1534|consensus 72.7 0.91 2E-05 39.7 -0.7 20 133-152 119-138 (273)
465 KOG0745|consensus 72.6 2 4.3E-05 41.3 1.5 15 50-64 226-240 (564)
466 cd03297 ABC_ModC_molybdenum_tr 72.6 1.6 3.5E-05 36.5 0.8 14 51-64 24-37 (214)
467 COG0178 UvrA Excinuclease ATPa 72.6 2.6 5.6E-05 43.2 2.4 15 50-64 26-40 (935)
468 PRK10575 iron-hydroxamate tran 72.6 1.9 4.1E-05 37.6 1.3 16 49-64 36-51 (265)
469 PRK13645 cbiO cobalt transport 72.6 1.7 3.7E-05 38.4 1.1 16 49-64 36-51 (289)
470 KOG0734|consensus 72.6 4.8 0.0001 39.8 4.1 62 51-131 338-402 (752)
471 cd03213 ABCG_EPDR ABCG transpo 72.5 2 4.3E-05 35.6 1.4 17 48-64 33-49 (194)
472 PRK10419 nikE nickel transport 72.5 1.9 4.1E-05 37.7 1.3 17 48-64 36-52 (268)
473 cd03251 ABCC_MsbA MsbA is an e 72.5 1.9 4.1E-05 36.5 1.3 16 49-64 27-42 (234)
474 PRK14245 phosphate ABC transpo 72.4 1.8 4E-05 37.1 1.2 17 48-64 27-43 (250)
475 cd01124 KaiC KaiC is a circadi 72.4 1.8 3.8E-05 35.0 1.0 12 53-64 2-13 (187)
476 cd03272 ABC_SMC3_euk Eukaryoti 72.4 2.8 6E-05 35.7 2.3 15 50-64 23-37 (243)
477 PRK09580 sufC cysteine desulfu 72.4 1.9 4.1E-05 36.8 1.2 17 48-64 25-41 (248)
478 PRK06526 transposase; Provisio 72.3 1.8 3.9E-05 38.1 1.1 41 50-95 98-142 (254)
479 cd03247 ABCC_cytochrome_bd The 72.3 2 4.3E-05 35.0 1.3 16 49-64 27-42 (178)
480 PRK14244 phosphate ABC transpo 72.3 1.9 4.2E-05 37.0 1.3 16 49-64 30-45 (251)
481 CHL00131 ycf16 sulfate ABC tra 72.1 1.9 4.2E-05 36.9 1.3 17 48-64 31-47 (252)
482 PRK11831 putative ABC transpor 72.1 1.9 4.2E-05 37.6 1.3 17 48-64 31-47 (269)
483 cd03253 ABCC_ATM1_transporter 72.1 2 4.2E-05 36.5 1.3 16 49-64 26-41 (236)
484 PRK11000 maltose/maltodextrin 72.1 1.9 4E-05 39.9 1.2 16 49-64 28-43 (369)
485 PRK10771 thiQ thiamine transpo 72.0 2 4.3E-05 36.5 1.3 17 48-64 23-39 (232)
486 COG2805 PilT Tfp pilus assembl 72.0 1.9 4E-05 39.6 1.1 14 51-64 126-139 (353)
487 cd04158 ARD1 ARD1 subfamily. 71.9 1.8 3.9E-05 34.6 1.0 12 53-64 2-13 (169)
488 cd03248 ABCC_TAP TAP, the Tran 71.9 2 4.4E-05 36.2 1.3 16 49-64 39-54 (226)
489 PRK15112 antimicrobial peptide 71.9 1.9 4.2E-05 37.6 1.2 17 48-64 37-53 (267)
490 PRK14261 phosphate ABC transpo 71.8 2 4.3E-05 37.0 1.3 16 49-64 31-46 (253)
491 PRK05564 DNA polymerase III su 71.8 36 0.00079 30.3 9.5 14 51-64 27-40 (313)
492 TIGR01277 thiQ thiamine ABC tr 71.8 1.9 4E-05 36.2 1.0 17 48-64 22-38 (213)
493 cd01876 YihA_EngB The YihA (En 71.8 1.8 3.8E-05 33.3 0.9 12 53-64 2-13 (170)
494 cd03217 ABC_FeS_Assembly ABC-t 71.7 2.1 4.5E-05 35.7 1.3 17 48-64 24-40 (200)
495 PRK14255 phosphate ABC transpo 71.7 2 4.4E-05 36.9 1.3 16 49-64 30-45 (252)
496 PRK13548 hmuV hemin importer A 71.7 2 4.3E-05 37.3 1.2 16 49-64 27-42 (258)
497 PRK14262 phosphate ABC transpo 71.7 2 4.4E-05 36.8 1.3 16 49-64 28-43 (250)
498 PRK13547 hmuV hemin importer A 71.6 2 4.4E-05 37.8 1.3 17 48-64 25-41 (272)
499 PRK13549 xylose transporter AT 71.6 2 4.4E-05 41.0 1.4 29 48-76 29-64 (506)
500 PRK09112 DNA polymerase III su 71.5 66 0.0014 29.6 11.3 13 52-64 47-59 (351)
No 1
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.2e-50 Score=332.97 Aligned_cols=162 Identities=30% Similarity=0.408 Sum_probs=150.0
Q ss_pred CCccEEEEccCCCCCC----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceee
Q psy10228 49 DQEPFMLCYTQDDPTT----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGT 112 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGT 112 (225)
.+.++||+||||+||+ |+|||+||+||+||+||||| |+++|+++|+.++||||.+|+||||||
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fv-s~~EF~~~i~~~~fLE~a~~~gnyYGT 81 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFV-TEEEFEELIERDEFLEWAEYHGNYYGT 81 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeC-CHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence 3568999999999998 99999999999999999999 999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCC--HHHHHHHHHHHHHHHHhhCCCC
Q psy10228 113 SVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMT--EEQAKKMYDRSMKMEQEFGEFF 189 (225)
Q Consensus 113 s~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~s--eeei~~rl~~a~k~E~~~~~~f 189 (225)
++..|+.++++|++||||++.+|++.++..--..++|||.|||+++|++ |++|++ ++.|.+||..|. .|+.+...|
T Consensus 82 ~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~-~Ei~~~~~f 160 (191)
T COG0194 82 SREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAK-KEISHADEF 160 (191)
T ss_pred cHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHH-HHHHHHHhC
Confidence 9999999999999999999999987776432223889999999999998 999995 789999999995 588888899
Q ss_pred cEEEECCCHHHHHHHHHHHHHhc
Q psy10228 190 TAVVQGDMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 190 d~vI~Nddleea~~~lk~iI~~~ 212 (225)
|++|+|||++.|+.+|+.||..+
T Consensus 161 dyvivNdd~e~a~~~l~~ii~ae 183 (191)
T COG0194 161 DYVIVNDDLEKALEELKSIILAE 183 (191)
T ss_pred CEEEECccHHHHHHHHHHHHHHH
Confidence 99999999999999999999876
No 2
>PRK14737 gmk guanylate kinase; Provisional
Probab=100.00 E-value=2.9e-47 Score=319.64 Aligned_cols=158 Identities=28% Similarity=0.441 Sum_probs=147.6
Q ss_pred CccEEEEccCCCCCC-----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceee
Q psy10228 50 QEPFMLCYTQDDPTT-----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGT 112 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGT 112 (225)
..+|||+|||||||+ +|||||||+||+||+||||| |+++|+++|++|.|+||++|+||+|||
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fv-s~~~F~~~i~~~~f~e~~~~~g~~YGt 82 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFL-TIEEFKKGIADGEFLEWAEVHDNYYGT 82 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeC-CHHHHHHHHHcCCeEEEEEECCeeecC
Confidence 468999999999998 99999999999999999999 999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCC---eEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhC
Q psy10228 113 SVASVRDVAEKGKHCILDVSGNAIKRLQVASLYP---VAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFG 186 (225)
Q Consensus 113 s~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~P---i~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~ 186 (225)
|+++|+.++++|++||||++++|++.|+.. +| ++|||.|||.+.+++ |.+|+ +++++++||+++. .|+++.
T Consensus 83 ~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~--~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~-~e~~~~ 159 (186)
T PRK14737 83 PKAFIEDAFKEGRSAIMDIDVQGAKIIKEK--FPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGI-IELDEA 159 (186)
T ss_pred cHHHHHHHHHcCCeEEEEcCHHHHHHHHHh--CCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHhhh
Confidence 999999999999999999999999999854 55 799999999998886 87886 5789999999984 688888
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHHh
Q psy10228 187 EFFTAVVQGDMPEDIYQKVKEVIQE 211 (225)
Q Consensus 187 ~~fd~vI~Nddleea~~~lk~iI~~ 211 (225)
+.||++|+|+|+++++++|+++|..
T Consensus 160 ~~~D~vI~N~dle~a~~ql~~ii~~ 184 (186)
T PRK14737 160 NEFDYKIINDDLEDAIADLEAIICG 184 (186)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHhc
Confidence 9999999999999999999999874
No 3
>KOG0609|consensus
Probab=100.00 E-value=1.2e-47 Score=357.24 Aligned_cols=190 Identities=34% Similarity=0.580 Sum_probs=174.5
Q ss_pred eecccccccccCCCCCCCCCCccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHH
Q psy10228 30 FSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQME 91 (225)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~ 91 (225)
-+-.++.|+.+..... -.-+.+||+|++|+|.. ||||||||++|+||++|||| |+++|+
T Consensus 322 d~~~~~tYEEV~~~~~--~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FV-Sk~~~e 398 (542)
T KOG0609|consen 322 DQPELLTYEEVVRYPP--FRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFV-SKEEME 398 (542)
T ss_pred hccccccHHHHhhhcc--cccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceee-ehHHHh
Confidence 3445566666665432 22379999999999997 99999999999999999999 999999
Q ss_pred HhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhc-------
Q psy10228 92 KDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNK------- 164 (225)
Q Consensus 92 ~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~------- 164 (225)
++|.+|+|+|||+|.||+|||++++|+.++++||+||||+.|++++.|+++++.|++|||.||+++.++++++
T Consensus 399 ~dI~~~~~lE~GEy~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~ 478 (542)
T KOG0609|consen 399 ADIRAGKFLEYGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRTAEFKPYVIFIAPPSLEELRALRKVAVMSTI 478 (542)
T ss_pred hhhhcCCceecCcchhccccchHHHHHHHHHhCCEEEEecCHHHhhhhhhhcccceEEEecCCCchhHHHHhhhcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred ---cCCHHHHHHHHHHHHHHHHhhCCCCcEEEECCCHHHHHHHHHHHHHhccCCceeeeCC
Q psy10228 165 ---RMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSK 222 (225)
Q Consensus 165 ---R~seeei~~rl~~a~k~E~~~~~~fd~vI~Nddleea~~~lk~iI~~~~~~~~WVp~~ 222 (225)
+.++++++++++.+..+|+.|+|+||.+|+|+|+++++++|+.+|+....+|+|||++
T Consensus 479 ~~~~~~d~~Lq~i~~eS~~ie~~yghyfD~iIvN~dld~t~~eL~~~iekl~tepqWVPvs 539 (542)
T KOG0609|consen 479 VAKQFTDEDLQEIIDESARIEQQYGHYFDLIIVNSDLDKTFRELKTAIEKLRTEPQWVPVS 539 (542)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHhhhheeEEEEcCcHHHHHHHHHHHHHHhccCCceeeee
Confidence 3468999999999999999999999999999999999999999999999999999986
No 4
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=100.00 E-value=5.4e-46 Score=309.07 Aligned_cols=159 Identities=40% Similarity=0.693 Sum_probs=142.0
Q ss_pred CccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee
Q psy10228 50 QEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG 111 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG 111 (225)
.++|||+|||||||+ +|||||||+||+||+||||| |+++|++++++|+||||++|+|++||
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fv-s~~~f~~~~~~~~fie~~~~~g~~YG 80 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFV-SKEEFERMIKAGEFIEYGEYDGNYYG 80 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE---HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEE-eechhhhhhccccEEEEeeecchhhh
Confidence 479999999999998 99999999999999999999 99999999999999999999999999
Q ss_pred ecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCC--HHHHHHHHHHHHHHHHhhCCC
Q psy10228 112 TSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMT--EEQAKKMYDRSMKMEQEFGEF 188 (225)
Q Consensus 112 Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~s--eeei~~rl~~a~k~E~~~~~~ 188 (225)
|++++|+.++++|++||||++++|++.|+...++|++|||.|||.+.|++ |++|+. .+++.+|+..+ +..+..+
T Consensus 81 t~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~---~~~~~~~ 157 (183)
T PF00625_consen 81 TSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERA---EKEFEHY 157 (183)
T ss_dssp EEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHH---HHHHGGG
T ss_pred hccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHH---HHHHhHh
Confidence 99999999999999999999999999999999999999999999999998 777773 45677777766 3444444
Q ss_pred --CcEEEECCCHHHHHHHHHHHHHhc
Q psy10228 189 --FTAVVQGDMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 189 --fd~vI~Nddleea~~~lk~iI~~~ 212 (225)
||++|+|+++++++.+|+++|+++
T Consensus 158 ~~fd~vi~n~~le~~~~~l~~ii~~~ 183 (183)
T PF00625_consen 158 NEFDYVIVNDDLEEAVKELKEIIEQE 183 (183)
T ss_dssp GGSSEEEECSSHHHHHHHHHHHHHHH
T ss_pred hcCCEEEECcCHHHHHHHHHHHHHhC
Confidence 999999999999999999999863
No 5
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=100.00 E-value=5e-45 Score=303.98 Aligned_cols=161 Identities=41% Similarity=0.670 Sum_probs=150.6
Q ss_pred CccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee
Q psy10228 50 QEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG 111 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG 111 (225)
.++|||+|||||||+ +|||||||+||++|+||||| |+++|+.++++|.|+||++|+||+||
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fv-s~~ef~~~i~~g~fve~~~~~g~~YG 80 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFV-SREEFEDDIKSGLFLEWGEYSGNYYG 80 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEEC-CHHHHHHHHHcCCeEEEEEEcCcCcc
Confidence 468999999999998 99999999999999999999 99999999999999999999999999
Q ss_pred ecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhCCC
Q psy10228 112 TSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFGEF 188 (225)
Q Consensus 112 Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~~~ 188 (225)
|++++|++++++|++||||++++|+++|+....+|++|||.|||.++|++ |..|+ +++++++|+.+|.+++. ..+.
T Consensus 81 t~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~-~~~~ 159 (184)
T smart00072 81 TSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQ-EYHL 159 (184)
T ss_pred cCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-hhcc
Confidence 99999999999999999999999999999888899999999999999987 88887 47899999999865444 4488
Q ss_pred CcEEEECCCHHHHHHHHHHHHHhc
Q psy10228 189 FTAVVQGDMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 189 fd~vI~Nddleea~~~lk~iI~~~ 212 (225)
||++|+|+|+++++++|+++|.++
T Consensus 160 fd~~I~n~~l~~~~~~l~~~i~~~ 183 (184)
T smart00072 160 FDYVIVNDDLEDAYEELKEILEAE 183 (184)
T ss_pred CCEEEECcCHHHHHHHHHHHHHhc
Confidence 999999999999999999999875
No 6
>PLN02772 guanylate kinase
Probab=100.00 E-value=3.1e-42 Score=316.31 Aligned_cols=165 Identities=34% Similarity=0.543 Sum_probs=152.0
Q ss_pred CCCCccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCc
Q psy10228 47 GSDQEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDN 108 (225)
Q Consensus 47 ~~~~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn 108 (225)
+++.+++||+||||+||+ +||||+||++|++|+||||+ ++++|++++++|.|+||++|+||
T Consensus 132 ~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fv-s~eeFe~~i~~g~FlE~~e~~Gn 210 (398)
T PLN02772 132 GNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFT-ERSVMEKEIKDGKFLEFASVHGN 210 (398)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeC-CHHHHHHHHHhCccceeeeecCc
Confidence 446689999999999998 99999999999999999999 99999999999999999999999
Q ss_pred ceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCC--HHHHHHHHHHHHHHHHhh
Q psy10228 109 LYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMT--EEQAKKMYDRSMKMEQEF 185 (225)
Q Consensus 109 ~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~s--eeei~~rl~~a~k~E~~~ 185 (225)
+||||+++|+.++++|++||||++++|++.++...+.|++|||.|||.++|++ |+.|++ +++|++||.+|. .|++.
T Consensus 211 ~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL~~A~-~Ei~~ 289 (398)
T PLN02772 211 LYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAE-AELEQ 289 (398)
T ss_pred cccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHhh
Confidence 99999999999999999999999999999999877788999999999999997 888884 789999999994 35543
Q ss_pred ---CCCCcEEEECCCHHHHHHHHHHHHHhcc
Q psy10228 186 ---GEFFTAVVQGDMPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 186 ---~~~fd~vI~Nddleea~~~lk~iI~~~~ 213 (225)
.+.||++|+|||+++|+++|+++|....
T Consensus 290 ~~~~~~fD~vIvNDdLe~A~~~L~~iL~~~~ 320 (398)
T PLN02772 290 GKSSGIFDHILYNDNLEECYKNLKKLLGLDG 320 (398)
T ss_pred ccccCCCCEEEECCCHHHHHHHHHHHHhhcC
Confidence 5689999999999999999999997654
No 7
>PRK14738 gmk guanylate kinase; Provisional
Probab=100.00 E-value=7.7e-36 Score=253.42 Aligned_cols=166 Identities=23% Similarity=0.341 Sum_probs=145.4
Q ss_pred CCCCCCccEEEEccCCCCCC-----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCC
Q psy10228 45 EDGSDQEPFMLCYTQDDPTT-----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYND 107 (225)
Q Consensus 45 ~~~~~~~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~g 107 (225)
++++..++|||+|||||||+ +||||+||++|++|++|||| ++++|++++++|.|+||++++|
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv-~~~~f~~~~~~~~~le~~~~~g 86 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFV-TPEEFREMISQNELLEWAEVYG 86 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeC-CHHHHHHHHHcCCcEEEEEEcC
Confidence 35566789999999999998 99999999999999999999 9999999999999999999999
Q ss_pred cceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCC--HHHHHHHHHHHHHHHHh
Q psy10228 108 NLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMT--EEQAKKMYDRSMKMEQE 184 (225)
Q Consensus 108 n~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~s--eeei~~rl~~a~k~E~~ 184 (225)
|+|||++++|+.++++|++||++++.+|+..|+.....+++||+.||+.++|++ |.+|.+ ++++.+|+..+. .+..
T Consensus 87 ~~YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~~-~e~~ 165 (206)
T PRK14738 87 NYYGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAP-LELE 165 (206)
T ss_pred ceecCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHHh
Confidence 999999999999999999999999999998887433223789999999988776 888874 578888998874 3454
Q ss_pred hCCCCcEEEEC--CCHHHHHHHHHHHHHhc
Q psy10228 185 FGEFFTAVVQG--DMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 185 ~~~~fd~vI~N--ddleea~~~lk~iI~~~ 212 (225)
....||++++| +++++++++|..+|...
T Consensus 166 ~~~~~~~~iId~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 166 QLPEFDYVVVNPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred cccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 45668999888 47999999999999875
No 8
>KOG0708|consensus
Probab=100.00 E-value=3e-36 Score=271.75 Aligned_cols=191 Identities=44% Similarity=0.738 Sum_probs=172.0
Q ss_pred cchhhhhccccceeecccccccccCCCC---CC-------------------CCCCccEEEEccCC-----------CCC
Q psy10228 17 NTSTLERKKKNFSFSRKFPFMKSKDDKS---ED-------------------GSDQEPFMLCYTQD-----------DPT 63 (225)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------~~~~~~ivl~Gpsg-----------sGK 63 (225)
|......++.+|.++|+|||+++++.++ .+ .+-.+|++|.||-- .+|
T Consensus 132 rr~r~r~k~~~f~~~~~~~~~~s~d~~~~~~~~~~~~~e~~~lsY~~V~~~~~~~~RPVlilg~~~d~l~~~Lv~e~~~k 211 (359)
T KOG0708|consen 132 RRVRLRLKRDSFNSGRDFPFLLSKDGLDMSSDENELGKELSLLSYELVERLDSNYLRPVLILGPLLDRLLDNLVNEFPDK 211 (359)
T ss_pred cccccccccccccccCCcccccCcccccccccccccccccccccchhhhhhhccccCceEeccchHHHHHHHHHHhhhcc
Confidence 3444455568899999999999999883 11 12246999999842 333
Q ss_pred C----CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHH
Q psy10228 64 T----EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRL 139 (225)
Q Consensus 64 ~----s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L 139 (225)
= +|||||. +++|++.++++.||++++++|++|||++.+|++++++|+||||||+++|+++|
T Consensus 212 F~~C~~~t~~~~---------------~~eme~~~k~~~fI~~~q~~~~~~~tsv~si~~va~k~~HCiLdv~~~ai~rL 276 (359)
T KOG0708|consen 212 FKSCLPETLRPS---------------REEMERDSKEETFIDAGQRSNGLYGTSVASIREVAEKGKHCLLDVGGDAIRRL 276 (359)
T ss_pred ccccchhhhccc---------------HHHhhhhcccCceeeecccCCCcceehHHHHHHHhcCCCceEEecCcchHHHH
Confidence 1 9999984 78999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCeEEEEecCCHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCcEEEECCCHHHHHHHHHHHHHhccCCceee
Q psy10228 140 QVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWV 219 (225)
Q Consensus 140 ~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~~rl~~a~k~E~~~~~~fd~vI~Nddleea~~~lk~iI~~~~~~~~WV 219 (225)
+.+++|||+|||.|.|.+.++.++.+.+.+++++.+++|.++|++|..+|+.+|..+++++++.+|+.+|.++|++++||
T Consensus 277 q~~~IyPIvIfIr~ks~~~i~e~~~~~t~~~ake~~e~a~klEqe~~~~~t~vv~~~s~e~i~~qvk~~I~~Eq~k~iWV 356 (359)
T KOG0708|consen 277 QRNQIYPIVIFIRVKSKKQIKERNLKITGEQAKELLERARKLEQELDRYFTLVVQGGSLEELLSQVKDIIEDEQKKVIWV 356 (359)
T ss_pred HhcceeceEEEEEechHHHHHHHhcccchHHHHHHHHHHHHhHhhhhhceEEEEecccHHHHHHHHHHHHHHhhCCeEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCC
Q psy10228 220 PSK 222 (225)
Q Consensus 220 p~~ 222 (225)
|++
T Consensus 357 p~~ 359 (359)
T KOG0708|consen 357 PAK 359 (359)
T ss_pred eCC
Confidence 975
No 9
>KOG0707|consensus
Probab=100.00 E-value=2.1e-35 Score=252.85 Aligned_cols=165 Identities=33% Similarity=0.497 Sum_probs=150.8
Q ss_pred CCCCccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCc
Q psy10228 47 GSDQEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDN 108 (225)
Q Consensus 47 ~~~~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn 108 (225)
..+.+++||+||||+||+ |||||.||.+|++|+||||+ +.++|+.|+++++|+||+.+.||
T Consensus 34 p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs-~~~~~~s~i~~~~fiE~a~~~gn 112 (231)
T KOG0707|consen 34 PGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFS-TTEEFLSMIKNNEFIEFATFSGN 112 (231)
T ss_pred CCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceec-cHHHHHHHhhhhhhhhhhhhhcc
Confidence 445589999999999998 99999999999999999999 99999999999999999999999
Q ss_pred ceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCC--HHHHHHHHHHHHHHHHhh
Q psy10228 109 LYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMT--EEQAKKMYDRSMKMEQEF 185 (225)
Q Consensus 109 ~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~s--eeei~~rl~~a~k~E~~~ 185 (225)
+|||++++|+++...|+.|++||+.+|++.++...+.++.||+.||+...+++ |+.|++ ++++.+|+..| ++|..+
T Consensus 113 ~yGtsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~sa-~~e~~~ 191 (231)
T KOG0707|consen 113 KYGTSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGTETEESLLKRLKSA-EEEFEI 191 (231)
T ss_pred cCCchHHHHHHHHhcCCcceeehhhcCceeeecCCCceEEEEecCCcchhHHHHhhccCcchHHHHHHHHHhh-hhhhcc
Confidence 99999999999999999999999999998888778899999999999998887 999996 57888999955 567766
Q ss_pred CC---CCcEEEEC-CCHHHHHHHHHHHHHhcc
Q psy10228 186 GE---FFTAVVQG-DMPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 186 ~~---~fd~vI~N-ddleea~~~lk~iI~~~~ 213 (225)
.. .||++++| +++++++++++.++....
T Consensus 192 ~~~~g~~d~~~~ns~~lee~~kel~~~~~~~~ 223 (231)
T KOG0707|consen 192 LENSGSFDLVIVNSDRLEEAYKELEIFISSDD 223 (231)
T ss_pred ccCCccccceecCCCchhhhhhhhhhhhhHHH
Confidence 54 59999999 899999999999987653
No 10
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=100.00 E-value=1.4e-31 Score=220.24 Aligned_cols=158 Identities=28% Similarity=0.396 Sum_probs=145.0
Q ss_pred ccEEEEccCCCCCC-----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeec
Q psy10228 51 EPFMLCYTQDDPTT-----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTS 113 (225)
Q Consensus 51 ~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs 113 (225)
++|+|+|||||||+ ++|||+|+.||.+|.+|+|+ +.++|.+++..+.|++++.+.+++||++
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 80 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFV-SKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEe-cHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence 58999999999999 78999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhCCCCc
Q psy10228 114 VASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFGEFFT 190 (225)
Q Consensus 114 ~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~~~fd 190 (225)
.+.|+.++++|++||+|++..|+..+...-..|..||+.|++.+.+++ |+.|+ +++++++|+..+. .+..+.+.||
T Consensus 81 ~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~-~~~~~~~~~d 159 (180)
T TIGR03263 81 KSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAK-KEIAHADEFD 159 (180)
T ss_pred HHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHHhccccCc
Confidence 999999999999999999999998888765567899999999888886 88886 4688999999884 4667788999
Q ss_pred EEEECCCHHHHHHHHHHHHH
Q psy10228 191 AVVQGDMPEDIYQKVKEVIQ 210 (225)
Q Consensus 191 ~vI~Nddleea~~~lk~iI~ 210 (225)
++|.|+++++++.+|++++.
T Consensus 160 ~~i~n~~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 160 YVIVNDDLEKAVEELKSIIL 179 (180)
T ss_pred EEEECCCHHHHHHHHHHHHh
Confidence 99999999999999999885
No 11
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.97 E-value=2.4e-30 Score=217.31 Aligned_cols=161 Identities=27% Similarity=0.390 Sum_probs=146.6
Q ss_pred CccEEEEccCCCCCC-----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceee
Q psy10228 50 QEPFMLCYTQDDPTT-----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGT 112 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGT 112 (225)
+++|+|+|||||||| ++|||+|+.||++|.||+|+ +.++|.+++..+.|++++.+.||+||+
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~ 83 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFV-SKEEFEEMIENGEFLEWAEVFGNYYGT 83 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEc-CHHHHHHHHHcCCcEEEEEECCccccC
Confidence 568999999999999 68999999999999999999 999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhCCCC
Q psy10228 113 SVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFGEFF 189 (225)
Q Consensus 113 s~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~~~f 189 (225)
+..+|..++++|++||+|++++|+..+......+++||+.|++.+.+++ +..|. +++.+++|+..+. .+..+.+.|
T Consensus 84 ~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~-~~~~~~~~~ 162 (205)
T PRK00300 84 PRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAR-EEIAHASEY 162 (205)
T ss_pred cHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHhHHhC
Confidence 9999999999999999999999998887654456899999999888886 87776 5789999999874 456666789
Q ss_pred cEEEECCCHHHHHHHHHHHHHhc
Q psy10228 190 TAVVQGDMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 190 d~vI~Nddleea~~~lk~iI~~~ 212 (225)
|++|+|+++++++.+|+.++...
T Consensus 163 d~vi~n~~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 163 DYVIVNDDLDTALEELKAIIRAE 185 (205)
T ss_pred CEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999986
No 12
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.97 E-value=1.3e-30 Score=208.57 Aligned_cols=118 Identities=35% Similarity=0.519 Sum_probs=113.7
Q ss_pred cEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeec
Q psy10228 52 PFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTS 113 (225)
Q Consensus 52 ~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs 113 (225)
+|+|+|||||||+ +||||+||++|++|++|+|+ +.++|.+++..+.|+||++++||+||++
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v-~~~~~~~~~~~~~f~e~~~~~~~~yg~~ 79 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFV-SKEEFERLIENGEFLEWAEFHGNYYGTS 79 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEe-CHHHHHHHHHcCCeEEEEEEcCEEecCc
Confidence 5899999999999 78999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCcEEE
Q psy10228 114 VASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVV 193 (225)
Q Consensus 114 ~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~~rl~~a~k~E~~~~~~fd~vI 193 (225)
.++|++++++|++||+|++.+|++.|+.....|++|||.|| |++|
T Consensus 80 ~~~i~~~~~~g~~~il~~~~~~~~~l~~~~~~~~~I~i~~~-----------------------------------~~~~ 124 (137)
T cd00071 80 KAAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP-----------------------------------DYVI 124 (137)
T ss_pred HHHHHHHHhCCCeEEEEecHHHHHHHHHcCCCeEEEEEECC-----------------------------------CeEE
Confidence 99999999999999999999999999987778899999998 9999
Q ss_pred ECCCHHHHHHHH
Q psy10228 194 QGDMPEDIYQKV 205 (225)
Q Consensus 194 ~Nddleea~~~l 205 (225)
.||++|+++++|
T Consensus 125 ~~~~~~~~~~~~ 136 (137)
T cd00071 125 VNDDLEKAYEEL 136 (137)
T ss_pred eCCCHHHHHHhh
Confidence 999999999876
No 13
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.88 E-value=3.4e-22 Score=166.57 Aligned_cols=154 Identities=10% Similarity=0.107 Sum_probs=119.3
Q ss_pred ccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceee
Q psy10228 51 EPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGT 112 (225)
Q Consensus 51 ~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGT 112 (225)
.+++|+|||||||| ++|||+++. .+.+|+|+ +.++|.++++++.|.+++.++||+|||
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~yg~ 78 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASA---GSENHIAL-SEQEFFTRAGQNLFALSWHANGLYYGV 78 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccch---hHHhheeE-cHHHHHHHHHCCchhhHHHHhCCccCC
Confidence 47999999999999 788998875 47789999 899999999999999888999999999
Q ss_pred cHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCC-eEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhCCC
Q psy10228 113 SVASVRDVAEKGKHCILDVSGNAIKRLQVASLYP-VAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFGEF 188 (225)
Q Consensus 113 s~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~P-i~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~~~ 188 (225)
++ ++++.++.|++||++........+...-..+ .+||+.+ |.+.+.+ |..|. +++++.+|++++.. + ..
T Consensus 79 ~~-~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~-s~e~l~~RL~~R~~~~~~~i~~rl~r~~~----~-~~ 151 (186)
T PRK10078 79 GI-EIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQV-SPEILRQRLENRGRENASEINARLARAAR----Y-QP 151 (186)
T ss_pred cH-HHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeC-CHHHHHHHHHHhCCCCHHHHHHHHHHhhh----h-cc
Confidence 99 5999999999999877665555554332233 4566655 5677765 76554 57789999976532 2 24
Q ss_pred CcEEEECC--CHHHHHHHHHHHHHhccCC
Q psy10228 189 FTAVVQGD--MPEDIYQKVKEVIQEQSGP 215 (225)
Q Consensus 189 fd~vI~Nd--dleea~~~lk~iI~~~~~~ 215 (225)
+|++|+|+ ++++++++|..++...+.+
T Consensus 152 ad~~vi~~~~s~ee~~~~i~~~l~~~~~~ 180 (186)
T PRK10078 152 QDCHTLNNDGSLRQSVDTLLTLLHLSQKE 180 (186)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhhcCcc
Confidence 68555544 5999999999999876654
No 14
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.86 E-value=1.5e-20 Score=154.73 Aligned_cols=151 Identities=13% Similarity=0.147 Sum_probs=120.2
Q ss_pred ccEEEEccCCCCCC--------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcce
Q psy10228 51 EPFMLCYTQDDPTT--------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY 110 (225)
Q Consensus 51 ~~ivl~GpsgsGK~--------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~Y 110 (225)
.+++|+|||||||| ++|||+++ .+|.+|+|+ +.++|..++.++.|.+++++.|++|
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPAS---AGGENHIAL-STEEFDHREDGGAFALSWQAHGLSY 77 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCC---CCCcccccc-CHHHHHHHHHCCCEEEEEeecCccc
Confidence 47899999999999 67888864 579999999 9999999999999999999999999
Q ss_pred eecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhC-
Q psy10228 111 GTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFG- 186 (225)
Q Consensus 111 GTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~- 186 (225)
|++. .+...+++|..||++.+..+...++......++|||.++ .+.+.+ |..|. +++.+.+++.+... +.
T Consensus 78 g~~~-~i~~~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~Rl~~R~~~~~~~~~~rl~~~~~----~~~ 151 (179)
T TIGR02322 78 GIPA-EIDQWLEAGDVVVVNGSRAVLPEARQRYPNLLVVNITAS-PDVLAQRLAARGRESREEIEERLARSAR----FAA 151 (179)
T ss_pred cChH-HHHHHHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHHhh----ccc
Confidence 9998 488889999999999998877666532223378899864 566654 76665 46778888876532 22
Q ss_pred CCCcEE-EECC-CHHHHHHHHHHHHHh
Q psy10228 187 EFFTAV-VQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 187 ~~fd~v-I~Nd-dleea~~~lk~iI~~ 211 (225)
..+|++ |.|+ ++++++.+|.+++.+
T Consensus 152 ~~~~~~vi~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 152 APADVTTIDNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred ccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence 456776 5565 799999999999865
No 15
>KOG3580|consensus
Probab=99.82 E-value=3e-20 Score=175.64 Aligned_cols=181 Identities=25% Similarity=0.467 Sum_probs=145.6
Q ss_pred hhccccc-hhhhhcc-----ccceeecccccccccCCCCCCCCCCccEEEEccCCCCCCCcccCCCCCCCCCCcceEEec
Q psy10228 12 RLRNLNT-STLERKK-----KNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVS 85 (225)
Q Consensus 12 ~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~ 85 (225)
++||||. ++++-+| +.+..+.|||.|+.+-. -+++++++++|.||-+.--.
T Consensus 589 R~RGlRsg~KknlrkSREDLsA~~vqtkfPaYERVvL--REAgFkRPVvifGPiADiAm--------------------- 645 (1027)
T KOG3580|consen 589 RMRGLRSGVKKNLRKSREDLSAVVVQTKFPAYERVVL--REAGFKRPVVIFGPIADIAM--------------------- 645 (1027)
T ss_pred HHhhhhhhhhhhhhhhhhhhhhceecccCCchhhhhh--hhhcccCceEEeccHHHHHH---------------------
Confidence 5799976 6666555 57889999999999976 58999999999999774211
Q ss_pred CHHHHHHhhhCCcEEEEEEeC-------C--ccee-ecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCC
Q psy10228 86 SREQMEKDIQNHLFIEAGQYN-------D--NLYG-TSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKS 155 (225)
Q Consensus 86 s~eef~~~i~~~~FiE~~~~~-------g--n~YG-Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps 155 (225)
+++. +++-.|.+.. | -.-| +...+|+.++++.||.||||.|++|.+|.+.++|||+||+.|.|
T Consensus 646 -----eKLa--~E~PD~fqiAkteprdag~~~stg~irL~TvrqiieqDKHALLDVTP~AvdrLNY~QwypIVvff~PdS 718 (1027)
T KOG3580|consen 646 -----EKLA--NELPDWFQIAKTEPRDAGSEKSTGVIRLNTVRQIIEQDKHALLDVTPKAVDRLNYTQWYPIVVFFNPDS 718 (1027)
T ss_pred -----HHHh--hhCcchhhhhccccccCCcccccceEEehhhHHHHhcccchhhccCHHHHhhhccceeeeEEEEeCCcc
Confidence 1110 1111111100 0 0112 46788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCC---HHHHHHHHHHHHHHHHhhCCCCcEEEE-CCCHHHHHHHHHHHHHhccCCceeeeCC
Q psy10228 156 VESIMEMNKRMT---EEQAKKMYDRSMKMEQEFGEFFTAVVQ-GDMPEDIYQKVKEVIQEQSGPSIWVPSK 222 (225)
Q Consensus 156 ~~~L~~L~~R~s---eeei~~rl~~a~k~E~~~~~~fd~vI~-Nddleea~~~lk~iI~~~~~~~~WVp~~ 222 (225)
...++.|++|+. -...++.+++|.++...+.|+|+++|. |..-+.+|..|+.+|.++|+.++||...
T Consensus 719 rqgvktmRqrL~P~Sr~SsRkLy~~a~KL~K~~~HLFTaTInLNs~nD~Wyg~LK~~iq~QQ~~~vWvsEg 789 (1027)
T KOG3580|consen 719 RQGVKTMRQRLAPTSRKSSRKLYDQANKLKKTCAHLFTATINLNSANDSWYGSLKDTIQHQQGEAVWVSEG 789 (1027)
T ss_pred hHHHHHHHHHhCcccchhHHHHHHHHHHHhhhchhheEeeeccCCCChhHHHHHHHHHHHhcCceeEeecc
Confidence 999999999994 457788999999999999999999987 6678899999999999999999999875
No 16
>PRK08356 hypothetical protein; Provisional
Probab=99.80 E-value=4.6e-20 Score=154.91 Aligned_cols=157 Identities=17% Similarity=0.227 Sum_probs=113.2
Q ss_pred CCCccEEEEccCCCCCC--------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeec
Q psy10228 48 SDQEPFMLCYTQDDPTT--------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTS 113 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~--------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs 113 (225)
+....|+|+||+||||+ ++|+|.+|..|.+|.+|+|+ +...|..++..+.|+||+++.+++||++
T Consensus 3 ~~~~~i~~~G~~gsGK~t~a~~l~~~g~~~is~~~~~~~~~~~~~~~~~f~-~~~~~~~~~~~~~~~e~g~~~~~~yG~~ 81 (195)
T PRK08356 3 VEKMIVGVVGKIAAGKTTVAKFFEEKGFCRVSCSDPLIDLLTHNVSDYSWV-PEVPFKGEPTRENLIELGRYLKEKYGED 81 (195)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHCCCcEEeCCCcccccccccccccccc-cHHHHhhccccccHHHHHHHHHHhcCcH
Confidence 44567899999999999 89999999999999999999 9999999999999999999999999998
Q ss_pred H---HHHHHHHHcCCeEEEEccHHHHHHHHhh----ccCCeEEEEecCCHHHHH-HHhccCC--------HHHHHHHHHH
Q psy10228 114 V---ASVRDVAEKGKHCILDVSGNAIKRLQVA----SLYPVAIFIKPKSVESIM-EMNKRMT--------EEQAKKMYDR 177 (225)
Q Consensus 114 ~---~sV~~v~~~gk~~ildv~~~gvk~L~~~----~~~Pi~IFI~pps~~~L~-~L~~R~s--------eeei~~rl~~ 177 (225)
. ..++.+ ..+..+++| |++.+... .....+|||.+|. +.+. +|..|.. .+++.+ +..
T Consensus 82 ~~~~~~~~~~-~~~~~ivid----G~r~~~q~~~l~~~~~~vi~l~~~~-~~~~~Rl~~R~~~~~~~~~~~e~~~~-~~~ 154 (195)
T PRK08356 82 ILIRLAVDKK-RNCKNIAID----GVRSRGEVEAIKRMGGKVIYVEAKP-EIRFERLRRRGAEKDKGIKSFEDFLK-FDE 154 (195)
T ss_pred HHHHHHHHHh-ccCCeEEEc----CcCCHHHHHHHHhcCCEEEEEECCH-HHHHHHHHhcCCccccccccHHHHHH-HHH
Confidence 4 333333 222333333 44434321 2224789999886 4444 4877763 233433 332
Q ss_pred HHHHH----HhhCCCCcEEEECC-CHHHHHHHHHHHHHhcc
Q psy10228 178 SMKME----QEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 178 a~k~E----~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~~ 213 (225)
+. .+ ......+|++|+|+ ++++++.+|..++...+
T Consensus 155 ~~-~~l~~~~~~~~~aD~vI~N~~~~e~~~~~i~~~~~~~~ 194 (195)
T PRK08356 155 WE-EKLYHTTKLKDKADFVIVNEGTLEELRKKVEEILRELS 194 (195)
T ss_pred HH-HHhhhhhhHHHhCcEEEECCCCHHHHHHHHHHHHHHhc
Confidence 31 11 12236799999985 89999999999998764
No 17
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.75 E-value=3.8e-17 Score=134.12 Aligned_cols=153 Identities=14% Similarity=0.173 Sum_probs=124.0
Q ss_pred CccEEEEccCCCCCC--------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcc
Q psy10228 50 QEPFMLCYTQDDPTT--------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNL 109 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~--------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~ 109 (225)
+++|+++||||+||. .+.|||.-. -|+|+-=| |..+|..+-.+|.|.-.|+.||.+
T Consensus 5 G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~a---g~EdH~av-s~~eF~~~a~~g~FAlsWqAhGL~ 80 (192)
T COG3709 5 GRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADA---GGEDHDAL-SEAEFNTRAGQGAFALSWQAHGLS 80 (192)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCC---Cccccccc-CHHHHHHHhhcCceeEEehhcCcc
Confidence 578999999999998 678888744 56888889 999999999999999999999999
Q ss_pred eeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCC--eEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHh
Q psy10228 110 YGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYP--VAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQE 184 (225)
Q Consensus 110 YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~P--i~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~ 184 (225)
||++.+ |...++.|.++|.+.+...+..++. .|| .+|.|.+ +.++|.+ |..|+ +.++|..||.|+.. ..
T Consensus 81 Ygip~e-Id~wl~~G~vvl~NgSRa~Lp~arr--ry~~Llvv~ita-~p~VLaqRL~~RGREs~eeI~aRL~R~a~--~~ 154 (192)
T COG3709 81 YGIPAE-IDLWLAAGDVVLVNGSRAVLPQARR--RYPQLLVVCITA-SPEVLAQRLAERGRESREEILARLARAAR--YT 154 (192)
T ss_pred ccCchh-HHHHHhCCCEEEEeccHhhhHHHHH--hhhcceeEEEec-CHHHHHHHHHHhccCCHHHHHHHHHhhcc--cc
Confidence 999987 9999999999999999887776663 455 4555555 4588886 76666 67999999999842 22
Q ss_pred hCCCCcE-EEECC-CHHHHHHHHHHHHHhcc
Q psy10228 185 FGEFFTA-VVQGD-MPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 185 ~~~~fd~-vI~Nd-dleea~~~lk~iI~~~~ 213 (225)
....|. +|.|+ .++.+.+++...+.+.+
T Consensus 155 -~~~~dv~~idNsG~l~~ag~~ll~~l~~~~ 184 (192)
T COG3709 155 -AGPGDVTTIDNSGELEDAGERLLALLHQDS 184 (192)
T ss_pred -cCCCCeEEEcCCCcHHHHHHHHHHHHHhhc
Confidence 235564 55676 69999999999988554
No 18
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=99.24 E-value=2.1e-12 Score=116.48 Aligned_cols=99 Identities=16% Similarity=0.160 Sum_probs=76.2
Q ss_pred ccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE
Q psy10228 51 EPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ 104 (225)
Q Consensus 51 ~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~ 104 (225)
.+|+|+|||||||| ++|||+|+++|++|++|||+ +..++.+....+.|+++.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhli-d~~~~~~~~s~~~f~~~a- 82 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLI-DILDPTESYSVADFQRDA- 82 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEee-cccChhhcccHHHHHHHH-
Confidence 57999999999999 88999999999999999999 888888888778887755
Q ss_pred eCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-Hhcc
Q psy10228 105 YNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKR 165 (225)
Q Consensus 105 ~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R 165 (225)
.+.|++++++|+++||+ .+.|+ .++ +-+..+ +..||+...+++ |..+
T Consensus 83 ---------~~~i~~i~~~gk~pIlv-GGt~~-Y~~-al~~g~--~~~p~~~~~~r~~l~~~ 130 (307)
T PRK00091 83 ---------LAAIADILARGKLPILV-GGTGL-YIK-ALLEGL--SPLPPADPELRAELEAL 130 (307)
T ss_pred ---------HHHHHHHHhCCCCEEEE-CcHHH-HHH-HhccCC--CCCCCCCHHHHHHHHHH
Confidence 78899999999999987 55554 122 112222 356777666654 5443
No 19
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.12 E-value=4e-11 Score=98.83 Aligned_cols=155 Identities=13% Similarity=-0.017 Sum_probs=88.1
Q ss_pred CccEEEEccCCCCCCCccc----CCCCCCCCCCcceEEecCHHHHHH---hhhCCc-EEEEEE-eCCcceeecHHHHHHH
Q psy10228 50 QEPFMLCYTQDDPTTEDTT----RARREYEVDGRDYHFVSSREQMEK---DIQNHL-FIEAGQ-YNDNLYGTSVASVRDV 120 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TT----Rp~R~~E~dG~dY~FV~s~eef~~---~i~~~~-FiE~~~-~~gn~YGTs~~sV~~v 120 (225)
+++|+|+|+||||||+..- +.+...=.-|+|+++.+....+.. .+..+. +.++.+ ..++.||+....+...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 81 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAM 81 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHHH
Confidence 3589999999999992221 111110012666554423322221 111111 222222 3457999999999999
Q ss_pred HHcCCeEEEEccHHHHHHHHh--hcc--CC-eEEEEecCCHHHHHH-HhccCCHHHHHHHHHHHHHHHHhh-CCCCcEEE
Q psy10228 121 AEKGKHCILDVSGNAIKRLQV--ASL--YP-VAIFIKPKSVESIME-MNKRMTEEQAKKMYDRSMKMEQEF-GEFFTAVV 193 (225)
Q Consensus 121 ~~~gk~~ildv~~~gvk~L~~--~~~--~P-i~IFI~pps~~~L~~-L~~R~seeei~~rl~~a~k~E~~~-~~~fd~vI 193 (225)
+++|..||+|....+...++. ..+ .| ..||+.+|. +++.+ +.+|... . .++..+. .+..+ ...+|.+|
T Consensus 82 l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~-~~l~~R~~~R~~~--~-~~~~~~~-~~~~~~~~~~dl~i 156 (175)
T cd00227 82 ARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPG-EVAEGRETARGDR--V-PGQARKQ-ARVVHAGVEYDLEV 156 (175)
T ss_pred HhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCH-HHHHHHHHhcCCc--c-chHHHHH-HHHhcCCCcceEEE
Confidence 999999999964332111211 112 23 678888875 66665 7777642 1 2233332 12222 35689988
Q ss_pred ECC--CHHHHHHHHHHHH
Q psy10228 194 QGD--MPEDIYQKVKEVI 209 (225)
Q Consensus 194 ~Nd--dleea~~~lk~iI 209 (225)
.++ ++++++++|...|
T Consensus 157 Dts~~s~~e~a~~i~~~l 174 (175)
T cd00227 157 DTTHKTPIECARAIAARV 174 (175)
T ss_pred ECCCCCHHHHHHHHHHhc
Confidence 876 6899998887764
No 20
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.82 E-value=2.7e-08 Score=82.87 Aligned_cols=152 Identities=12% Similarity=0.044 Sum_probs=88.7
Q ss_pred CccEEEEccCCCCCC----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhh--CCcEEEEEE---eCCc
Q psy10228 50 QEPFMLCYTQDDPTT----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQ--NHLFIEAGQ---YNDN 108 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~--~~~FiE~~~---~~gn 108 (225)
+.+|+|.|++||||| .++|+.|+ ++.. .+.|...+. ...+..+.. +..+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPG-GTPL---------GEKLRELLLDPNEEMDDKTELLLFYAA 72 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCC-CChH---------HHHHHHHHhccccCCCHHHHHHHHHHH
Confidence 358999999999999 46777776 2322 245555554 233333332 2356
Q ss_pred ceeecHHHHHHHHHcCCeEEEEc------cHH---------HHHHHHhh---ccCC-eEEEEecCCHHHHHHHhccCCHH
Q psy10228 109 LYGTSVASVRDVAEKGKHCILDV------SGN---------AIKRLQVA---SLYP-VAIFIKPKSVESIMEMNKRMTEE 169 (225)
Q Consensus 109 ~YGTs~~sV~~v~~~gk~~ildv------~~~---------gvk~L~~~---~~~P-i~IFI~pps~~~L~~L~~R~see 169 (225)
.|++....|...+++|.++|+|= .-+ -+..+... ...| .+||+..|.-..++++.+|...+
T Consensus 73 r~~~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~ 152 (205)
T PRK00698 73 RAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELD 152 (205)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcc
Confidence 78888888888889999999982 111 11222211 1345 78888887644444588776311
Q ss_pred -------HHHHHHHHHHHHHHhhCCCCcEEEEC-C-CHHHHHHHHHHHHHhc
Q psy10228 170 -------QAKKMYDRSMKMEQEFGEFFTAVVQG-D-MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 170 -------ei~~rl~~a~k~E~~~~~~fd~vI~N-d-dleea~~~lk~iI~~~ 212 (225)
+..+++..+.+ +......++.+++| + +++++.++|..+|...
T Consensus 153 ~~~~~~~~~~~~~~~~y~-~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i~~~ 203 (205)
T PRK00698 153 RIEQEGLDFFERVREGYL-ELAEKEPERIVVIDASQSLEEVHEDILAVIKAW 203 (205)
T ss_pred hhhhhhHHHHHHHHHHHH-HHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 22334433321 11111223444444 3 7999999999998753
No 21
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=98.77 E-value=3e-09 Score=95.21 Aligned_cols=70 Identities=13% Similarity=0.219 Sum_probs=60.2
Q ss_pred cEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEe
Q psy10228 52 PFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQY 105 (225)
Q Consensus 52 ~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~ 105 (225)
+|+|+||+||||| +.||++|+++|.+|+.|||+ + +++..+.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhli-d------------~~~~~~~ 67 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLI-D------------ILDPSES 67 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEE-E------------Eechhhe
Confidence 4899999999998 89999999999999999999 4 5555543
Q ss_pred C--CcceeecHHHHHHHHHcCCeEEEEccHHH
Q psy10228 106 N--DNLYGTSVASVRDVAEKGKHCILDVSGNA 135 (225)
Q Consensus 106 ~--gn~YGTs~~sV~~v~~~gk~~ildv~~~g 135 (225)
. +++|++..+.|++++++|+.+|+. .+.|
T Consensus 68 ~~v~~f~~~a~~~i~~~~~~g~~pi~v-GGTg 98 (287)
T TIGR00174 68 YSAADFQTLALNAIADITARGKIPLLV-GGTG 98 (287)
T ss_pred EcHHHHHHHHHHHHHHHHhCCCCEEEE-cCcH
Confidence 3 789999999999999999998874 4444
No 22
>PRK04040 adenylate kinase; Provisional
Probab=98.64 E-value=9.3e-08 Score=80.40 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=46.9
Q ss_pred ccCC-eEEEEecCCHHHHHH-Hhc----cC--CHHHHHHHHHHHHHHHHhhC---CCCcEEEECCC--HHHHHHHHHHHH
Q psy10228 143 SLYP-VAIFIKPKSVESIME-MNK----RM--TEEQAKKMYDRSMKMEQEFG---EFFTAVVQGDM--PEDIYQKVKEVI 209 (225)
Q Consensus 143 ~~~P-i~IFI~pps~~~L~~-L~~----R~--seeei~~rl~~a~k~E~~~~---~~fd~vI~Ndd--leea~~~lk~iI 209 (225)
.+.| .+|+|.+|..+.+++ ++. |. +++.++.+++.+......++ +.|+++|+|++ +++|+++|..+|
T Consensus 108 ~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 108 ELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred hcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 3456 334444433366666 542 54 56888988888865444443 67999999999 999999999987
Q ss_pred H
Q psy10228 210 Q 210 (225)
Q Consensus 210 ~ 210 (225)
.
T Consensus 188 ~ 188 (188)
T PRK04040 188 R 188 (188)
T ss_pred C
Confidence 3
No 23
>PRK06762 hypothetical protein; Provisional
Probab=98.31 E-value=4.1e-06 Score=67.89 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=80.6
Q ss_pred ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEE
Q psy10228 51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILD 130 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ild 130 (225)
.+|+|+|++|||||+..-.-. +.-|..+.++ +.+.+...+..+ +.......+-.-...++..++.|..+|+|
T Consensus 3 ~li~i~G~~GsGKST~A~~L~---~~l~~~~~~i-~~D~~r~~l~~~----~~~~~~~~~~~~~~~~~~~~~~g~~vild 74 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQ---ERLGRGTLLV-SQDVVRRDMLRV----KDGPGNLSIDLIEQLVRYGLGHCEFVILE 74 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHH---HHhCCCeEEe-cHHHHHHHhccc----cCCCCCcCHHHHHHHHHHHHhCCCEEEEc
Confidence 478999999999983322111 1113357788 788877654211 11111111111233344557789999987
Q ss_pred ccH--H----HHHHHHhhccCC-eEEEEecCCHHHHHHHhccC-----CHHHHHHHHHHHHHHHHhhCCCCcEEEECC--
Q psy10228 131 VSG--N----AIKRLQVASLYP-VAIFIKPKSVESIMEMNKRM-----TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-- 196 (225)
Q Consensus 131 v~~--~----gvk~L~~~~~~P-i~IFI~pps~~~L~~L~~R~-----seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-- 196 (225)
-.. . -++.+....-.| ..||+.+|-...+++..+|. +++.++.+++.- +-.+.++.+|+++
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~ 149 (166)
T PRK06762 75 GILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPH-----DTLGVIGETIFTDNL 149 (166)
T ss_pred hhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhc-----CCcCCCCeEEecCCC
Confidence 532 1 133443322234 67899887544444565553 345555444332 1123468888765
Q ss_pred CHHHHHHHHHHHHH
Q psy10228 197 MPEDIYQKVKEVIQ 210 (225)
Q Consensus 197 dleea~~~lk~iI~ 210 (225)
++++.++++...+.
T Consensus 150 ~~~~v~~~i~~~~~ 163 (166)
T PRK06762 150 SLKDIFDAILTDIG 163 (166)
T ss_pred CHHHHHHHHHHHhc
Confidence 58888888877654
No 24
>PRK01184 hypothetical protein; Provisional
Probab=98.30 E-value=3.1e-06 Score=69.82 Aligned_cols=154 Identities=12% Similarity=0.132 Sum_probs=81.9
Q ss_pred cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEE----EEEeCC---cceeecH--HHHHHHHH
Q psy10228 52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIE----AGQYND---NLYGTSV--ASVRDVAE 122 (225)
Q Consensus 52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE----~~~~~g---n~YGTs~--~sV~~v~~ 122 (225)
.|+|+||+|||||+...-. +.-| |.++++-+.+.+.+..+.+-. ++...- ..||-.. ..+...+.
T Consensus 3 ~i~l~G~~GsGKsT~a~~~----~~~g--~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 76 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKIA----REMG--IPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIR 76 (184)
T ss_pred EEEEECCCCCCHHHHHHHH----HHcC--CcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 6899999999999653211 2223 444523455655543221100 111000 1222111 11122232
Q ss_pred c--CCeEEEEcc--HHHHHHHHhhccCC---eEEEEecCCHHHHHHHhccC------CHHHHHHHHHHHHHH-HHhhCCC
Q psy10228 123 K--GKHCILDVS--GNAIKRLQVASLYP---VAIFIKPKSVESIMEMNKRM------TEEQAKKMYDRSMKM-EQEFGEF 188 (225)
Q Consensus 123 ~--gk~~ildv~--~~gvk~L~~~~~~P---i~IFI~pps~~~L~~L~~R~------seeei~~rl~~a~k~-E~~~~~~ 188 (225)
. +..+|+|.- +.-+..++ ..++ .+|+|.+|....+.+|..|. +.+++.+|.+..... ..+....
T Consensus 77 ~~~~~~vvidg~r~~~e~~~~~--~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~~ 154 (184)
T PRK01184 77 EKGDEVVVIDGVRGDAEVEYFR--KEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIAL 154 (184)
T ss_pred hcCCCcEEEeCCCCHHHHHHHH--HhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHHh
Confidence 2 567788853 22233332 2234 78999887655555666664 245666665543110 1112357
Q ss_pred CcEEEECC-CHHHHHHHHHHHHHhcc
Q psy10228 189 FTAVVQGD-MPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 189 fd~vI~Nd-dleea~~~lk~iI~~~~ 213 (225)
.|++|.|+ +++++..+++.++....
T Consensus 155 ad~vI~N~~~~~~l~~~v~~~~~~~~ 180 (184)
T PRK01184 155 ADYMIVNDSTLEEFRARVRKLLERIL 180 (184)
T ss_pred cCEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 89999987 79999999999987643
No 25
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.17 E-value=1.2e-06 Score=73.72 Aligned_cols=81 Identities=19% Similarity=0.262 Sum_probs=55.5
Q ss_pred CeEEEEccHHHHHHHHhh---ccCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CH
Q psy10228 125 KHCILDVSGNAIKRLQVA---SLYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MP 198 (225)
Q Consensus 125 k~~ildv~~~gvk~L~~~---~~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dl 198 (225)
+.+++|+.. |-.. ..+-.+|+|.+|.-..+++|..| .+++++..|+..... ..+.....|+||.|+ ++
T Consensus 107 ~~vv~e~pl-----l~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~ri~~Q~~-~~~~~~~ad~vI~N~g~~ 180 (194)
T PRK00081 107 PYVVLDIPL-----LFENGLEKLVDRVLVVDAPPETQLERLMARDGLSEEEAEAIIASQMP-REEKLARADDVIDNNGDL 180 (194)
T ss_pred CEEEEEehH-----hhcCCchhhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHhCC-HHHHHHhCCEEEECCCCH
Confidence 577777654 2222 23447889988765556666655 378888888875422 222345789999998 89
Q ss_pred HHHHHHHHHHHHh
Q psy10228 199 EDIYQKVKEVIQE 211 (225)
Q Consensus 199 eea~~~lk~iI~~ 211 (225)
+++..++..++..
T Consensus 181 e~l~~qv~~i~~~ 193 (194)
T PRK00081 181 EELRKQVERLLQE 193 (194)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 26
>PRK00098 GTPase RsgA; Reviewed
Probab=98.01 E-value=1.2e-06 Score=78.54 Aligned_cols=76 Identities=13% Similarity=0.163 Sum_probs=63.9
Q ss_pred CccEEEEccCCCCCC------------------------CcccCCCCCCCCC------------CcceEEecCHHHHHHh
Q psy10228 50 QEPFMLCYTQDDPTT------------------------EDTTRARREYEVD------------GRDYHFVSSREQMEKD 93 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~------------------------s~TTRp~R~~E~d------------G~dY~FV~s~eef~~~ 93 (225)
+..++|+|+||+||| .||||.++..+.+ +.+|+++ +.+++...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~-~~~~~~~~ 242 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDL-EAEELEHY 242 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCC-CHHHHHHH
Confidence 457899999999998 4899998887777 6778888 88888877
Q ss_pred hhC-CcEEEEEEeCC-cceeecHHHHHHHHHcCCe
Q psy10228 94 IQN-HLFIEAGQYND-NLYGTSVASVRDVAEKGKH 126 (225)
Q Consensus 94 i~~-~~FiE~~~~~g-n~YGTs~~sV~~v~~~gk~ 126 (225)
..+ ..+.++..|++ .+||++-.+|++++++|++
T Consensus 243 f~~~~~~~~~c~f~~c~h~~ep~c~v~~a~~~g~i 277 (298)
T PRK00098 243 FPEFRPLSGDCKFRNCTHLHEPGCAVKAAVEEGEI 277 (298)
T ss_pred HHHHHHHhCCCCCCCCcCCCCCCChHHHHHHcCCC
Confidence 654 56777777877 8999999999999999983
No 27
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.00 E-value=1.5e-05 Score=65.28 Aligned_cols=148 Identities=13% Similarity=0.078 Sum_probs=75.7
Q ss_pred cEEEEccCCCCCC----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCc------EEEEEEeCCcc
Q psy10228 52 PFMLCYTQDDPTT----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHL------FIEAGQYNDNL 109 (225)
Q Consensus 52 ~ivl~GpsgsGK~----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~------FiE~~~~~gn~ 109 (225)
+|+|.|+.||||| -++++.|+..+. .+.+........ +.++..+..+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 71 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPI----------GEAIRELLLDPEDEKMDPRAELLLFAADR 71 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCch----------HHHHHHHHhccCccCCCHHHHHHHHHHHH
Confidence 6899999999999 345555543221 122332222211 11111122344
Q ss_pred eeecHHHHHHHHHcCCeEEEEcc---------------HHHHHHHHh---hccCC-eEEEEecCCHHHHHHHhccCCH--
Q psy10228 110 YGTSVASVRDVAEKGKHCILDVS---------------GNAIKRLQV---ASLYP-VAIFIKPKSVESIMEMNKRMTE-- 168 (225)
Q Consensus 110 YGTs~~sV~~v~~~gk~~ildv~---------------~~gvk~L~~---~~~~P-i~IFI~pps~~~L~~L~~R~se-- 168 (225)
|....+.+...+..|.++|+|-. ...+..+.. ....| .+||+.+|....++++.+|...
T Consensus 72 ~~~~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~ 151 (200)
T cd01672 72 AQHVEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDR 151 (200)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcch
Confidence 55555566667778999999811 122222222 11235 6788888754444457777631
Q ss_pred -----HHHHHHHHHHHHHHHhhCCCCcEEEEC-C-CHHHHHHHHHHHHH
Q psy10228 169 -----EQAKKMYDRSMKMEQEFGEFFTAVVQG-D-MPEDIYQKVKEVIQ 210 (225)
Q Consensus 169 -----eei~~rl~~a~k~E~~~~~~fd~vI~N-d-dleea~~~lk~iI~ 210 (225)
.+..+++..+.. +.........+++| + ++++..+++...|.
T Consensus 152 ~~~~~~~~~~~~~~~y~-~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 152 DEQEGLEFHERVREGYL-ELAAQEPERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred hhhhhHHHHHHHHHHHH-HHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence 122233333211 11111112344443 3 68999999988875
No 28
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.96 E-value=1.4e-05 Score=69.41 Aligned_cols=150 Identities=11% Similarity=0.174 Sum_probs=79.8
Q ss_pred cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE-eCCcceeecHHHHHHHHHcCCeEEEE
Q psy10228 52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ-YNDNLYGTSVASVRDVAEKGKHCILD 130 (225)
Q Consensus 52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~-~~gn~YGTs~~sV~~v~~~gk~~ild 130 (225)
+|+|+|++|||||+....-.+.-+..|.+++++ +.+.+..... .|.. +...........|+..+++|..+|+|
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i-~~D~lr~~~~-----~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D 74 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIIL-GTDLIRESFP-----VWKEKYEEFIRDSTLYLIKTALKNKYSVIVD 74 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEE-ccHHHHHHhH-----HhhHHhHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 489999999999932221111112236677777 6555543321 0111 11112233445688888899998888
Q ss_pred ccH--HHH-HHHH---hhccCC-eEEEEecCCHHHHH-HHhccC---CHHHHHHHHHHHHHHHHhh----CCCCcEEEEC
Q psy10228 131 VSG--NAI-KRLQ---VASLYP-VAIFIKPKSVESIM-EMNKRM---TEEQAKKMYDRSMKMEQEF----GEFFTAVVQG 195 (225)
Q Consensus 131 v~~--~gv-k~L~---~~~~~P-i~IFI~pps~~~L~-~L~~R~---seeei~~rl~~a~k~E~~~----~~~fd~vI~N 195 (225)
-.. .+. ..+. ...-.| .+||+.+|. +.+. +...|. .++.+.+++.+. |... +...+++|..
T Consensus 75 ~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~-e~~~~Rn~~R~~~~~~~~i~~l~~r~---e~p~~~~~wd~~~~~vd~ 150 (249)
T TIGR03574 75 DTNYYNSMRRDLINIAKEYNKNYIIIYLKAPL-DTLLRRNIERGEKIPNEVIKDMYEKF---DEPGTKYSWDLPDLTIDT 150 (249)
T ss_pred ccchHHHHHHHHHHHHHhCCCCEEEEEecCCH-HHHHHHHHhCCCCCCHHHHHHHHHhh---CCCCCCCCccCceEEecC
Confidence 532 111 1111 111233 678888765 4444 455565 234454444432 2211 2346677765
Q ss_pred C---CHHHHHHHHHHHHHh
Q psy10228 196 D---MPEDIYQKVKEVIQE 211 (225)
Q Consensus 196 d---dleea~~~lk~iI~~ 211 (225)
+ +.+++++.|...+..
T Consensus 151 ~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 151 TKKIDYNEILEEILEISEN 169 (249)
T ss_pred CCCCCHHHHHHHHHHHhhc
Confidence 4 468899998887653
No 29
>PLN02840 tRNA dimethylallyltransferase
Probab=97.86 E-value=6.1e-06 Score=77.48 Aligned_cols=73 Identities=10% Similarity=0.263 Sum_probs=58.9
Q ss_pred CccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEE
Q psy10228 50 QEPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAG 103 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~ 103 (225)
..+|+|+||+||||| +.+|++|...|.+|+.|||+ + +++-.
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhli-d------------il~p~ 87 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLI-D------------ILHPS 87 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeE-e------------ecCCC
Confidence 457999999999999 67999999999999999999 4 22222
Q ss_pred -EeC-CcceeecHHHHHHHHHcCCeEEEEccHHHH
Q psy10228 104 -QYN-DNLYGTSVASVRDVAEKGKHCILDVSGNAI 136 (225)
Q Consensus 104 -~~~-gn~YGTs~~sV~~v~~~gk~~ildv~~~gv 136 (225)
.|+ |.++......|+++.++|+++||. .+.|+
T Consensus 88 e~ySv~~F~~~A~~~I~~i~~rgkiPIvV-GGTGl 121 (421)
T PLN02840 88 DDYSVGAFFDDARRATQDILNRGRVPIVA-GGTGL 121 (421)
T ss_pred CceeHHHHHHHHHHHHHHHHhcCCCEEEE-cCccH
Confidence 244 678888999999999999998764 55453
No 30
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.86 E-value=0.00011 Score=60.01 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=51.8
Q ss_pred HHcCCeEEEEccHHHHHHH---HhhccCC-eEEEEecCCHHHHHHHhccC--------CHHHHHHHHHHHHHHH----Hh
Q psy10228 121 AEKGKHCILDVSGNAIKRL---QVASLYP-VAIFIKPKSVESIMEMNKRM--------TEEQAKKMYDRSMKME----QE 184 (225)
Q Consensus 121 ~~~gk~~ildv~~~gvk~L---~~~~~~P-i~IFI~pps~~~L~~L~~R~--------seeei~~rl~~a~k~E----~~ 184 (225)
+..|..+|+|--+..+.+. ......| .+||+.+|....++++.+|. +++.+.+|+....+.- ..
T Consensus 79 ~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~ 158 (188)
T TIGR01360 79 LGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAY 158 (188)
T ss_pred cCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHH
Confidence 3457788888655433222 2212235 67888887533334466554 3567788887654211 11
Q ss_pred hCCCCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228 185 FGEFFTAVVQGD--MPEDIYQKVKEVIQE 211 (225)
Q Consensus 185 ~~~~fd~vI~Nd--dleea~~~lk~iI~~ 211 (225)
|...-..+++|. ++++....|...|..
T Consensus 159 y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 159 YETKGKLRKINAEGTVDDVFLQVCTAIDK 187 (188)
T ss_pred HHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 222224444443 689999999888863
No 31
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.85 E-value=6.7e-05 Score=63.21 Aligned_cols=68 Identities=13% Similarity=0.249 Sum_probs=42.0
Q ss_pred ccCCeEEEEecCCHHHHHHHhcc-----C-CHHHHHHHHHHHHH-HH----HhhCCCCcEEEECC-----CHHHHHHHHH
Q psy10228 143 SLYPVAIFIKPKSVESIMEMNKR-----M-TEEQAKKMYDRSMK-ME----QEFGEFFTAVVQGD-----MPEDIYQKVK 206 (225)
Q Consensus 143 ~~~Pi~IFI~pps~~~L~~L~~R-----~-seeei~~rl~~a~k-~E----~~~~~~fd~vI~Nd-----dleea~~~lk 206 (225)
.++-..|||.+|.-..+.++..| + +.+++..++..... .. .......|+||.|+ +++++..+|.
T Consensus 124 ~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~~i~ 203 (209)
T PRK05480 124 DLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIR 203 (209)
T ss_pred hhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHHHHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHHHHH
Confidence 44568999999876666653322 3 56666666655422 11 23356899999866 4666666666
Q ss_pred HHHH
Q psy10228 207 EVIQ 210 (225)
Q Consensus 207 ~iI~ 210 (225)
.++.
T Consensus 204 ~~~~ 207 (209)
T PRK05480 204 QLLE 207 (209)
T ss_pred HHhh
Confidence 6554
No 32
>PRK04182 cytidylate kinase; Provisional
Probab=97.84 E-value=0.00011 Score=59.58 Aligned_cols=89 Identities=12% Similarity=0.169 Sum_probs=50.1
Q ss_pred cCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHH-----HHHhh------CCCC
Q psy10228 123 KGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMK-----MEQEF------GEFF 189 (225)
Q Consensus 123 ~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k-----~E~~~------~~~f 189 (225)
.+..||++-...+. +. ....-++|||.+|....++++..|. +..++.+.+..... ...-| .+.+
T Consensus 73 ~~~~~Vi~g~~~~~--~~-~~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 149 (180)
T PRK04182 73 KEDNVVLEGRLAGW--MA-KDYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIY 149 (180)
T ss_pred cCCCEEEEEeecce--Ee-cCCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccc
Confidence 55567776422221 11 1122378999987544445566554 34444333333221 11112 2578
Q ss_pred cEEEECC--CHHHHHHHHHHHHHhccC
Q psy10228 190 TAVVQGD--MPEDIYQKVKEVIQEQSG 214 (225)
Q Consensus 190 d~vI~Nd--dleea~~~lk~iI~~~~~ 214 (225)
|.+|.++ +++++++.|.+.+...+.
T Consensus 150 d~~idt~~~~~~~~~~~I~~~~~~~~~ 176 (180)
T PRK04182 150 DLVINTSRWDPEGVFDIILTAIDKLLK 176 (180)
T ss_pred cEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 8888876 699999999999886543
No 33
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=97.82 E-value=9e-05 Score=62.72 Aligned_cols=84 Identities=19% Similarity=0.161 Sum_probs=58.7
Q ss_pred cCCeEEEEccHHHHHHHHhh---ccCCeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHhhCCCCcEEEECC-
Q psy10228 123 KGKHCILDVSGNAIKRLQVA---SLYPVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD- 196 (225)
Q Consensus 123 ~gk~~ildv~~~gvk~L~~~---~~~Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k~E~~~~~~fd~vI~Nd- 196 (225)
++..+++|+-. |-.. ...-.+|||.+|....+++|.+|. +.+++..|+..-. -..+.....|+||.|+
T Consensus 102 ~~~~vi~e~pL-----L~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~~Q~-~~~~k~~~aD~vI~N~~ 175 (196)
T PRK14732 102 EGKLVIWEVPL-----LFETDAYTLCDATVTVDSDPEESILRTISRDGMKKEDVLARIASQL-PITEKLKRADYIVRNDG 175 (196)
T ss_pred cCCcEEEEeee-----eeEcCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcC-CHHHHHHhCCEEEECCC
Confidence 35677777643 2111 234588999998777777766663 7888988886632 1223456789999998
Q ss_pred CHHHHHHHHHHHHHhc
Q psy10228 197 MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 197 dleea~~~lk~iI~~~ 212 (225)
+++++..++..++...
T Consensus 176 ~~~~l~~~v~~l~~~~ 191 (196)
T PRK14732 176 NREGLKEECKILYSTL 191 (196)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7999999999887654
No 34
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.80 E-value=1.7e-05 Score=65.00 Aligned_cols=151 Identities=9% Similarity=0.084 Sum_probs=69.7
Q ss_pred CCccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee---ecHHHHHH-HHHcC
Q psy10228 49 DQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG---TSVASVRD-VAEKG 124 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG---Ts~~sV~~-v~~~g 124 (225)
...+|+|+|++|||||+....-.+.-...|...+|+ +.+.+.+.... ++ |.....- .....+.+ +...|
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~-~~d~~r~~~~~-----~~-~~~~~~~~~~~~~~~l~~~l~~~g 78 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL-DGDELREILGH-----YG-YDKQSRIEMALKRAKLAKFLADQG 78 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE-ecHHHHhhcCC-----CC-CCHHHHHHHHHHHHHHHHHHHhCC
Confidence 345899999999999822211100001123455677 55555543221 11 1000000 01122333 34578
Q ss_pred CeEEEEccHHH--HHHHHhhccCC-eEEEEecCCHHHHH-HHhccC----CHHHHHHHHHHHHHHHHhhCCCCcEEEECC
Q psy10228 125 KHCILDVSGNA--IKRLQVASLYP-VAIFIKPKSVESIM-EMNKRM----TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD 196 (225)
Q Consensus 125 k~~ildv~~~g--vk~L~~~~~~P-i~IFI~pps~~~L~-~L~~R~----seeei~~rl~~a~k~E~~~~~~fd~vI~Nd 196 (225)
.++|+|..... +..+...-..| ++||+.+|- +++. ++.+++ +.++++.++..- ...+....|++|.|+
T Consensus 79 ~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~-e~~~~R~~~~l~~~~~~~~~~~~~~~~---~~~~~~~Ad~vI~~~ 154 (176)
T PRK05541 79 MIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDM-EELIRRDQKGLYTKALKGEIKNVVGVD---IPFDEPKADLVIDNS 154 (176)
T ss_pred CEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCH-HHHHHhchhhHHHHHHcCcccccccCC---CcccCCCCCEEEeCC
Confidence 88888743211 22222222233 578888763 4443 233221 112222222211 012224478999987
Q ss_pred ---CHHHHHHHHHHHHH
Q psy10228 197 ---MPEDIYQKVKEVIQ 210 (225)
Q Consensus 197 ---dleea~~~lk~iI~ 210 (225)
++++.+.++...+.
T Consensus 155 ~~~~~~~~v~~i~~~l~ 171 (176)
T PRK05541 155 CRTSLDEKVDLILNKLK 171 (176)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 46777777666654
No 35
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.76 E-value=0.00026 Score=56.86 Aligned_cols=67 Identities=12% Similarity=0.301 Sum_probs=38.8
Q ss_pred CCeEEEEecCCHHHHH-HHhccCC----H-HHHHHHHHHHH-HHHHhhCCCCcEEEECC--CHHHHHHHHHHHHHhc
Q psy10228 145 YPVAIFIKPKSVESIM-EMNKRMT----E-EQAKKMYDRSM-KMEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 145 ~Pi~IFI~pps~~~L~-~L~~R~s----e-eei~~rl~~a~-k~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~~~ 212 (225)
....|||.+|. +.+. ++..|.. . +...+.+.... +....+...+|.+|..+ +++++.+.|.+.|...
T Consensus 97 ~~~~v~l~~~~-~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~idt~~~~~~e~~~~I~~~v~~~ 172 (175)
T PRK00131 97 RGTVVYLDASF-EELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLYEEVADITVETDGRSPEEVVNEILEKLEAA 172 (175)
T ss_pred CCEEEEEECCH-HHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCeEEeCCCCCHHHHHHHHHHHHHhh
Confidence 35789998864 4444 4654331 0 11112222211 11233556789988754 6899999999998754
No 36
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.63 E-value=0.0002 Score=57.66 Aligned_cols=87 Identities=15% Similarity=0.199 Sum_probs=49.4
Q ss_pred HHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHh-----h------
Q psy10228 119 DVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMKMEQE-----F------ 185 (225)
Q Consensus 119 ~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k~E~~-----~------ 185 (225)
+.+..+..||++....+. +. .....+.|||.+|....++++.+|. +.+++.+++.+..+.+.. +
T Consensus 69 ~~~~~~~~~Vi~g~~~~~--~~-~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~ 145 (171)
T TIGR02173 69 EIALKEKNVVLESRLAGW--IV-REYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDD 145 (171)
T ss_pred HHHhcCCCEEEEecccce--ee-cCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 333356678877543222 11 1222378999997544445566664 566666655543322222 1
Q ss_pred CCCCcEEEECC--CHHHHHHHHHHHH
Q psy10228 186 GEFFTAVVQGD--MPEDIYQKVKEVI 209 (225)
Q Consensus 186 ~~~fd~vI~Nd--dleea~~~lk~iI 209 (225)
...||.+|..+ ++++ ++.|..++
T Consensus 146 ~~~ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 146 LSIYDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred cccccEEEECCCCCHHH-HHHHHHHh
Confidence 25789877766 6888 88777654
No 37
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.60 E-value=0.00094 Score=55.85 Aligned_cols=142 Identities=20% Similarity=0.254 Sum_probs=82.9
Q ss_pred cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHH---cCCeEE
Q psy10228 52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAE---KGKHCI 128 (225)
Q Consensus 52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~---~gk~~i 128 (225)
.|+|+|++|+|||++..+-.. -| |..+ +-.+|-. ++|-+.++-+- -..|=.-.+.++..++ ....+|
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~----lg--~~~i-~l~el~~--e~~~~~~~de~-r~s~~vD~d~~~~~le~~~~~~~~I 71 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLRE----LG--YKVI-ELNELAK--ENGLYTEYDEL-RKSVIVDVDKLRKRLEELLREGSGI 71 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHH----hC--Ccee-eHHHHHH--hcCCeeccCCc-cceEEeeHHHHHHHHHHHhccCCeE
Confidence 489999999999977666431 12 3444 3334433 34444433221 1256667777777777 456778
Q ss_pred EEccHHHHHHHHhhccCC--eEEEEecCCHHHHHH-HhccC-CHHHHHHHHHHHH--HHHHhhCCCCcEEE----ECCCH
Q psy10228 129 LDVSGNAIKRLQVASLYP--VAIFIKPKSVESIME-MNKRM-TEEQAKKMYDRSM--KMEQEFGEFFTAVV----QGDMP 198 (225)
Q Consensus 129 ldv~~~gvk~L~~~~~~P--i~IFI~pps~~~L~~-L~~R~-seeei~~rl~~a~--k~E~~~~~~fd~vI----~Nddl 198 (225)
+|-.. +++.| -.|+|.-.....|.+ |++|+ +++.|.+-++.-. -+..+.-+.|+.++ .|.++
T Consensus 72 vd~H~--------~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~~~v~evdtt~~s~ 143 (180)
T COG1936 72 VDSHL--------SHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERFEAVIEVDTTNRSP 143 (180)
T ss_pred eechh--------hhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCceEEEECCCCCH
Confidence 77433 24444 345554445678886 99999 6655543332210 00111123335433 36689
Q ss_pred HHHHHHHHHHHHh
Q psy10228 199 EDIYQKVKEVIQE 211 (225)
Q Consensus 199 eea~~~lk~iI~~ 211 (225)
+++++.+..+|..
T Consensus 144 ee~~~~i~~ii~~ 156 (180)
T COG1936 144 EEVAEEIIDIIGG 156 (180)
T ss_pred HHHHHHHHHHHcc
Confidence 9999999999984
No 38
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.55 E-value=0.00085 Score=54.06 Aligned_cols=92 Identities=16% Similarity=0.162 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCeEEEEccH---HHHHHHHhhccCCeEEEEecCCHHHHH-HHhccCC----HHHHHHHHHHHHHHHHhhC
Q psy10228 115 ASVRDVAEKGKHCILDVSG---NAIKRLQVASLYPVAIFIKPKSVESIM-EMNKRMT----EEQAKKMYDRSMKMEQEFG 186 (225)
Q Consensus 115 ~sV~~v~~~gk~~ildv~~---~gvk~L~~~~~~Pi~IFI~pps~~~L~-~L~~R~s----eeei~~rl~~a~k~E~~~~ 186 (225)
+.+...+..|..+|++... .....++..+....+||+.+| .+.+. ++..|.. .+.+..++... +.-..
T Consensus 61 ~~~~~~l~~~~~~Vi~~t~~~~~~r~~~~~~~~~~~~i~l~~~-~e~~~~R~~~R~~~~~~~~~i~~~~~~~---~~~~~ 136 (163)
T TIGR01313 61 DASTAAAAKNKVGIITCSALKRHYRDILREAEPNLHFIYLSGD-KDVILERMKARKGHFMKADMLESQFAAL---EEPLA 136 (163)
T ss_pred HHHHHHHhcCCCEEEEecccHHHHHHHHHhcCCCEEEEEEeCC-HHHHHHHHHhccCCCCCHHHHHHHHHHh---CCCCC
Confidence 3455566778777877652 222223322211245788776 45554 4777652 23343333321 21111
Q ss_pred CCCcEEEEC-C-CHHHHHHHHHHHHH
Q psy10228 187 EFFTAVVQG-D-MPEDIYQKVKEVIQ 210 (225)
Q Consensus 187 ~~fd~vI~N-d-dleea~~~lk~iI~ 210 (225)
...++++++ + ..+++.+++...+.
T Consensus 137 ~e~~~~~id~~~~~~~~~~~~~~~~~ 162 (163)
T TIGR01313 137 DETDVLRVDIDQPLEGVEEDCIAVVL 162 (163)
T ss_pred CCCceEEEECCCCHHHHHHHHHHHHh
Confidence 223555554 4 57888888877653
No 39
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.54 E-value=0.00026 Score=62.64 Aligned_cols=122 Identities=11% Similarity=0.086 Sum_probs=65.9
Q ss_pred ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeC---C-cceeecHHHHHHHHHcCCe
Q psy10228 51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYN---D-NLYGTSVASVRDVAEKGKH 126 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~---g-n~YGTs~~sV~~v~~~gk~ 126 (225)
..|+++|++|||||+..-+-.+.. . .+.++ +.+.+..++....-..+..|. + ..+..-...+.+.+++|..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~--~--~~~~l-~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 77 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN--P--KAVNV-NRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKS 77 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC--C--CCEEE-eccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCe
Confidence 478999999999993222211110 1 46788 778887776432110000010 0 0112233445666788999
Q ss_pred EEEEccHH---HHHHHH----hhccCCeEEEEecCCHHHHHH-HhccC----CHHHHHHHHHHH
Q psy10228 127 CILDVSGN---AIKRLQ----VASLYPVAIFIKPKSVESIME-MNKRM----TEEQAKKMYDRS 178 (225)
Q Consensus 127 ~ildv~~~---gvk~L~----~~~~~Pi~IFI~pps~~~L~~-L~~R~----seeei~~rl~~a 178 (225)
+|+|.... -...+. ..+.....|++.+ +.+++.+ +.+|. .++-+++++.+.
T Consensus 78 vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~-~~e~~~~R~~~R~~~~~~~~~i~~~~~~~ 140 (300)
T PHA02530 78 VIISDTNLNPERRRKWKELAKELGAEFEEKVFDV-PVEELVKRNRKRGERAVPEDVLRSMFKQM 140 (300)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCC-CHHHHHHHHHccCcCCCCHHHHHHHHHHH
Confidence 99985432 222221 1122234688877 4666665 77775 366677666654
No 40
>PRK14530 adenylate kinase; Provisional
Probab=97.52 E-value=0.00044 Score=58.67 Aligned_cols=89 Identities=19% Similarity=0.295 Sum_probs=49.6
Q ss_pred CCeEEEEccHHHH-HHHHhhccCC-----eEEEEecCCHHHHH-----HHhccC--CHHHHHHHHHHHHHH----HHhhC
Q psy10228 124 GKHCILDVSGNAI-KRLQVASLYP-----VAIFIKPKSVESIM-----EMNKRM--TEEQAKKMYDRSMKM----EQEFG 186 (225)
Q Consensus 124 gk~~ildv~~~gv-k~L~~~~~~P-----i~IFI~pps~~~L~-----~L~~R~--seeei~~rl~~a~k~----E~~~~ 186 (225)
+.++.||++..-+ +++..+...| +.+++.||+.+.+. +|.+|. +++.+++||....+. ...|.
T Consensus 107 d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~ 186 (215)
T PRK14530 107 DVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYR 186 (215)
T ss_pred CEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567766443 4444433333 44556666544332 244454 367899999887531 12232
Q ss_pred CCCcE-EEE-CCCHHHHHHHHHHHHHhc
Q psy10228 187 EFFTA-VVQ-GDMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 187 ~~fd~-vI~-Nddleea~~~lk~iI~~~ 212 (225)
...-+ .|. +.++++.++.|...|.+.
T Consensus 187 ~~~~~~~id~~~~~~~v~~~i~~~l~~~ 214 (215)
T PRK14530 187 DQGVLVEVDGEQTPDEVWADIQDAIDDA 214 (215)
T ss_pred hCCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence 22122 333 347999999999998753
No 41
>PRK08233 hypothetical protein; Provisional
Probab=97.50 E-value=0.0011 Score=53.95 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=39.3
Q ss_pred cCCeEEEEecCCHHHHHHHhccC----CHHHHHHHHHHHHH----HH----HhhCCCCcEEEECC-CHHHHHHHHHHHHH
Q psy10228 144 LYPVAIFIKPKSVESIMEMNKRM----TEEQAKKMYDRSMK----ME----QEFGEFFTAVVQGD-MPEDIYQKVKEVIQ 210 (225)
Q Consensus 144 ~~Pi~IFI~pps~~~L~~L~~R~----seeei~~rl~~a~k----~E----~~~~~~fd~vI~Nd-dleea~~~lk~iI~ 210 (225)
....+|||.+|....+.++.+|. +.+.+.+++..-.. .- .......+.+|.++ ++++.++++..+|.
T Consensus 97 ~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~ 176 (182)
T PRK08233 97 FIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELY 176 (182)
T ss_pred HcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 44589999987654555544332 22233333322211 10 11123457777666 79999999999988
Q ss_pred hc
Q psy10228 211 EQ 212 (225)
Q Consensus 211 ~~ 212 (225)
..
T Consensus 177 ~~ 178 (182)
T PRK08233 177 RR 178 (182)
T ss_pred hC
Confidence 54
No 42
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.49 E-value=0.0035 Score=51.63 Aligned_cols=65 Identities=5% Similarity=0.195 Sum_probs=38.9
Q ss_pred CCeEEEEecCCHHHHHHHhccC-----C---HHHHHHHHHHHHHHHHhhCCCCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228 145 YPVAIFIKPKSVESIMEMNKRM-----T---EEQAKKMYDRSMKMEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQE 211 (225)
Q Consensus 145 ~Pi~IFI~pps~~~L~~L~~R~-----s---eeei~~rl~~a~k~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~~ 211 (225)
...+|||..|-...++++..+. . ..+.-+.+... + +..|....|++|.++ +.++++.+|.+.+++
T Consensus 97 ~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~-R-~~~Y~~~Ad~~idt~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 97 RGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANE-R-NPLYEEIADVTIRTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHH-H-HHHHHhhCCEEEECCCCCHHHHHHHHHHHHhh
Confidence 3478999987544344454321 1 11221222222 1 455667799999876 588999999888754
No 43
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.48 E-value=0.0024 Score=52.21 Aligned_cols=86 Identities=13% Similarity=0.157 Sum_probs=48.3
Q ss_pred CCeEEEEccHHHH---HHHH---hhccCC-eEEEEecCCHHHHHHHhccC--------CHHHHHHHHHHHHHHHH----h
Q psy10228 124 GKHCILDVSGNAI---KRLQ---VASLYP-VAIFIKPKSVESIMEMNKRM--------TEEQAKKMYDRSMKMEQ----E 184 (225)
Q Consensus 124 gk~~ildv~~~gv---k~L~---~~~~~P-i~IFI~pps~~~L~~L~~R~--------seeei~~rl~~a~k~E~----~ 184 (225)
++.+|||--|... ..+. .....| .+|++..|....++++.+|. +.+.+++|++...+... .
T Consensus 76 ~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~ 155 (183)
T TIGR01359 76 SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEH 155 (183)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888654322 2222 112334 67889887655555677664 35677777775543211 1
Q ss_pred hCCC-CcEEEECC-CHHHHHHHHHHHH
Q psy10228 185 FGEF-FTAVVQGD-MPEDIYQKVKEVI 209 (225)
Q Consensus 185 ~~~~-fd~vI~Nd-dleea~~~lk~iI 209 (225)
|... .-.+|.++ ++++.++++.+++
T Consensus 156 ~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 156 YENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred HHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 2211 12344544 6899989888765
No 44
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.48 E-value=0.00011 Score=62.05 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=53.2
Q ss_pred CCeEEEEccHHHHHHHHhh---ccCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-C
Q psy10228 124 GKHCILDVSGNAIKRLQVA---SLYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-M 197 (225)
Q Consensus 124 gk~~ildv~~~gvk~L~~~---~~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-d 197 (225)
...+++|+.. |-.. ...-.+|||.+|.-..+.++..| .+++++.+|++.-...+ ......|+||.|+ +
T Consensus 107 ~~~vv~e~pl-----l~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~g~s~e~~~~ri~~Q~~~~-~k~~~aD~vI~N~g~ 180 (195)
T PRK14730 107 NPIVVLVIPL-----LFEAKLTDLCSEIWVVDCSPEQQLQRLIKRDGLTEEEAEARINAQWPLE-EKVKLADVVLDNSGD 180 (195)
T ss_pred CCEEEEEeHH-----hcCcchHhCCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhCCCHH-HHHhhCCEEEECCCC
Confidence 3466777543 2111 23346899998765555666665 37888888876532111 2245789999998 7
Q ss_pred HHHHHHHHHHHHH
Q psy10228 198 PEDIYQKVKEVIQ 210 (225)
Q Consensus 198 leea~~~lk~iI~ 210 (225)
++++..++..++.
T Consensus 181 ~e~l~~qv~~~l~ 193 (195)
T PRK14730 181 LEKLYQQVDQLLK 193 (195)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 45
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.47 E-value=0.0004 Score=57.69 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=51.7
Q ss_pred CCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHH
Q psy10228 124 GKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPED 200 (225)
Q Consensus 124 gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dlee 200 (225)
|..+++++.. -.. .........+|||.+|.-..+.++..|. +++++.+|+...... ......+|++|.|+ ++++
T Consensus 105 ~~~vvi~~pl-l~e-~~~~~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~~r~~~q~~~-~~~~~~ad~vI~N~~~~e~ 181 (188)
T TIGR00152 105 LAYVLLDVPL-LFE-NKLRSLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQKRLASQMDI-EERLARADDVIDNSATLAD 181 (188)
T ss_pred CCEEEEEchH-hhh-CCcHHhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhcCCH-HHHHHhCCEEEECCCCHHH
Confidence 4566666432 110 0112345578999987656566666663 788999898886422 23345789999998 7898
Q ss_pred HHHHHH
Q psy10228 201 IYQKVK 206 (225)
Q Consensus 201 a~~~lk 206 (225)
+..++.
T Consensus 182 l~~~~~ 187 (188)
T TIGR00152 182 LVKQLE 187 (188)
T ss_pred HHHHHh
Confidence 888775
No 46
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.44 E-value=0.00056 Score=58.04 Aligned_cols=92 Identities=9% Similarity=0.144 Sum_probs=50.6
Q ss_pred HHHHHHcCCeEEEEcc--HHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCC-------HHHHHHHHHHHHHHHHhh-
Q psy10228 117 VRDVAEKGKHCILDVS--GNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMT-------EEQAKKMYDRSMKMEQEF- 185 (225)
Q Consensus 117 V~~v~~~gk~~ildv~--~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~s-------eeei~~rl~~a~k~E~~~- 185 (225)
++..+.+|..+++|.- ..+...... .....++|+.+++.+.+++ +..|.. .+.-.+-+.....+ |+|
T Consensus 90 a~~~l~~G~sVIvEgv~l~p~~~~~~~-~~~v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~~~~~ir~i-~~~l 167 (197)
T PRK12339 90 IRRALLNGEDLVIESLYFHPPMIDENR-TNNIRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAEHLPEYRTI-MDYS 167 (197)
T ss_pred HHHHHHcCCCEEEEecCcCHHHHHHHH-hcCeEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHH-HHHH
Confidence 5567789999999842 122222211 1234677887778777754 666641 11111111211111 111
Q ss_pred ---CCCCc-EEEECCCHHHHHHHHHHHHH
Q psy10228 186 ---GEFFT-AVVQGDMPEDIYQKVKEVIQ 210 (225)
Q Consensus 186 ---~~~fd-~vI~Nddleea~~~lk~iI~ 210 (225)
+..++ -+|.|++++++.+.+.+.+.
T Consensus 168 ~~~a~~~~i~~i~~~~~~~~~~~~~~~~~ 196 (197)
T PRK12339 168 IADARGYNIKVIDTDNYREARNPLLDPIS 196 (197)
T ss_pred HHHHHHcCCCeecCccHHHHHHHHHHHhc
Confidence 23344 36788999999999987764
No 47
>PRK14531 adenylate kinase; Provisional
Probab=97.42 E-value=0.0017 Score=53.84 Aligned_cols=85 Identities=9% Similarity=0.146 Sum_probs=48.0
Q ss_pred CCeEEEEccHHHHHHHH-------hhccCC-eEEEEecCCHHHHH-HHhccC----CHHHHHHHHHHHHHHHHhhCCCCc
Q psy10228 124 GKHCILDVSGNAIKRLQ-------VASLYP-VAIFIKPKSVESIM-EMNKRM----TEEQAKKMYDRSMKMEQEFGEFFT 190 (225)
Q Consensus 124 gk~~ildv~~~gvk~L~-------~~~~~P-i~IFI~pps~~~L~-~L~~R~----seeei~~rl~~a~k~E~~~~~~fd 190 (225)
+.-.|||--|....+.+ ..+..| .+||+.+|. +.+. ++..|. +++.+++|++...+.-.....+|.
T Consensus 79 ~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~-~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~ 157 (183)
T PRK14531 79 SGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDD-AVLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHYR 157 (183)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCH-HHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578886543322221 112233 578888875 5554 477665 356788888877432111112222
Q ss_pred -----EEEECC-CHHHHHHHHHHHH
Q psy10228 191 -----AVVQGD-MPEDIYQKVKEVI 209 (225)
Q Consensus 191 -----~vI~Nd-dleea~~~lk~iI 209 (225)
+.|.++ +.++.+.+|...+
T Consensus 158 ~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 158 QRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred hcCCEEEEECCCCHHHHHHHHHHHh
Confidence 445554 7999999988765
No 48
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.42 E-value=0.00024 Score=58.76 Aligned_cols=15 Identities=7% Similarity=-0.159 Sum_probs=13.5
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+.+|+|.|+.||||+
T Consensus 3 g~~IvieG~~GsGKs 17 (195)
T TIGR00041 3 GMFIVIEGIDGAGKT 17 (195)
T ss_pred ceEEEEECCCCCCHH
Confidence 357999999999999
No 49
>PRK13946 shikimate kinase; Provisional
Probab=97.42 E-value=0.0017 Score=53.94 Aligned_cols=92 Identities=10% Similarity=0.106 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCeEEEEc------cHHHHHHHHhhccCCeEEEEecCCHHHH-HHHhccCC------H--HHHHHHHHHH
Q psy10228 114 VASVRDVAEKGKHCILDV------SGNAIKRLQVASLYPVAIFIKPKSVESI-MEMNKRMT------E--EQAKKMYDRS 178 (225)
Q Consensus 114 ~~sV~~v~~~gk~~ildv------~~~gvk~L~~~~~~Pi~IFI~pps~~~L-~~L~~R~s------e--eei~~rl~~a 178 (225)
...++++++.+. ||+.. .++..+.|+ -..++|||..|- +.+ +++..|.. + .+.-+.+.+.
T Consensus 70 ~~~l~~l~~~~~-~Vi~~ggg~~~~~~~r~~l~---~~~~~v~L~a~~-e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~ 144 (184)
T PRK13946 70 RRVIARLLKGGP-LVLATGGGAFMNEETRAAIA---EKGISVWLKADL-DVLWERVSRRDTRPLLRTADPKETLARLMEE 144 (184)
T ss_pred HHHHHHHHhcCC-eEEECCCCCcCCHHHHHHHH---cCCEEEEEECCH-HHHHHHhcCCCCCCcCCCCChHHHHHHHHHH
Confidence 445566666664 45443 222223332 245889999864 554 44665542 1 1211222222
Q ss_pred HHHHHhhCCCCcEEEECC--CHHHHHHHHHHHHHhcc
Q psy10228 179 MKMEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 179 ~k~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~~~~ 213 (225)
. +..|. .+|.+|..+ +++++++.|...|....
T Consensus 145 R--~~~y~-~~dl~i~~~~~~~~~~~~~i~~~i~~~~ 178 (184)
T PRK13946 145 R--YPVYA-EADLTVASRDVPKEVMADEVIEALAAYL 178 (184)
T ss_pred H--HHHHH-hCCEEEECCCCCHHHHHHHHHHHHHHhh
Confidence 1 22333 378887654 68999999999887644
No 50
>PRK13947 shikimate kinase; Provisional
Probab=97.38 E-value=0.0038 Score=50.47 Aligned_cols=63 Identities=14% Similarity=0.269 Sum_probs=33.4
Q ss_pred CeEEEEecCCHHHHH-HHhccC-----CHHHHHHHHHHHHH-HHHhhCCCCcEEEECC--CHHHHHHHHHHHHH
Q psy10228 146 PVAIFIKPKSVESIM-EMNKRM-----TEEQAKKMYDRSMK-MEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQ 210 (225)
Q Consensus 146 Pi~IFI~pps~~~L~-~L~~R~-----seeei~~rl~~a~k-~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~ 210 (225)
..+|||..+. +.+. ++..|. ...+..+++....+ ....| ..+|.+|..+ ++++++++|..+.-
T Consensus 95 ~~vv~L~~~~-~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y-~~ad~~Idt~~~~~~~i~~~I~~~~~ 166 (171)
T PRK13947 95 GVVICLKARP-EVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFY-DFADYTIDTGDMTIDEVAEEIIKAYL 166 (171)
T ss_pred CEEEEEECCH-HHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHH-HhcCEEEECCCCCHHHHHHHHHHHHH
Confidence 4689998854 5444 465442 11122222222111 01122 3568877743 68999999998433
No 51
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.38 E-value=0.0014 Score=54.53 Aligned_cols=82 Identities=11% Similarity=0.099 Sum_probs=41.8
Q ss_pred CCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHh-----ccC-CHHHHHHHHHH-HHHHHH----hhCCCCcEE
Q psy10228 124 GKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMN-----KRM-TEEQAKKMYDR-SMKMEQ----EFGEFFTAV 192 (225)
Q Consensus 124 gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~-----~R~-seeei~~rl~~-a~k~E~----~~~~~fd~v 192 (225)
..++|++.-..+.. ....+..-.+|||.+|.-..+.++. .|+ +.+++.+++.. ....+. .+...+|+|
T Consensus 99 ~~~vI~eg~~~~~~-~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~i 177 (198)
T cd02023 99 ADVIILEGILALYD-KELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFVKPMHEQFIEPTKRYADVI 177 (198)
T ss_pred CCEEEEechhhccc-hhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhhhhhHHHhCccchhceeEE
Confidence 34556554332221 1122445689999987644455522 233 44555444432 221221 234679999
Q ss_pred EECC-CHHHHHHHHH
Q psy10228 193 VQGD-MPEDIYQKVK 206 (225)
Q Consensus 193 I~Nd-dleea~~~lk 206 (225)
|.|+ +.+++..-+.
T Consensus 178 i~~~~~~~~~~~~~~ 192 (198)
T cd02023 178 IPRGGDNHVAIDLIV 192 (198)
T ss_pred ECCCCCccHHHHHHH
Confidence 9876 4555555443
No 52
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.35 E-value=0.00083 Score=56.67 Aligned_cols=70 Identities=11% Similarity=0.185 Sum_probs=41.7
Q ss_pred ccCCeEEEEecCCHHHHHHHhcc-----C-CHHHHHHHHHHHHH-HH----HhhCCCCcEEEECC-CHHHHHHHHHHHHH
Q psy10228 143 SLYPVAIFIKPKSVESIMEMNKR-----M-TEEQAKKMYDRSMK-ME----QEFGEFFTAVVQGD-MPEDIYQKVKEVIQ 210 (225)
Q Consensus 143 ~~~Pi~IFI~pps~~~L~~L~~R-----~-seeei~~rl~~a~k-~E----~~~~~~fd~vI~Nd-dleea~~~lk~iI~ 210 (225)
.....+|||.+|....+.++..| + +.+++..+.....+ .. ......+|.||.|+ +.+.+++-|..-|.
T Consensus 124 ~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~ 203 (207)
T TIGR00235 124 DLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIK 203 (207)
T ss_pred HhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHHHHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHH
Confidence 35668999999876666664333 3 34444333332211 11 12346789999866 67888887776665
Q ss_pred hc
Q psy10228 211 EQ 212 (225)
Q Consensus 211 ~~ 212 (225)
..
T Consensus 204 ~~ 205 (207)
T TIGR00235 204 HL 205 (207)
T ss_pred Hh
Confidence 43
No 53
>PRK14532 adenylate kinase; Provisional
Probab=97.31 E-value=0.00048 Score=56.91 Aligned_cols=151 Identities=17% Similarity=0.124 Sum_probs=77.1
Q ss_pred EEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE------eCCccee--ecHHHHHHHHH--
Q psy10228 53 FMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ------YNDNLYG--TSVASVRDVAE-- 122 (225)
Q Consensus 53 ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~------~~gn~YG--Ts~~sV~~v~~-- 122 (225)
|+|+||+||||++.-.+-. +.-| +.++++-+-+.+.+..+. +.+. -.|..|. +...-+.+.+.
T Consensus 3 i~~~G~pGsGKsT~a~~la---~~~g--~~~is~~d~lr~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 75 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLV---EERG--MVQLSTGDMLRAAIASGS--ELGQRVKGIMDRGELVSDEIVIALIEERLPEA 75 (188)
T ss_pred EEEECCCCCCHHHHHHHHH---HHcC--CeEEeCcHHHHHHHHcCC--HHHHHHHHHHHCCCccCHHHHHHHHHHHHhCc
Confidence 8999999999993322221 2223 345523344554443221 0110 0233332 12222333332
Q ss_pred -cCCeEEEEccHHH---HHH----HHhhccCC-eEEEEecCCHHHHHHHhccC--------CHHHHHHHHHHHHHHH---
Q psy10228 123 -KGKHCILDVSGNA---IKR----LQVASLYP-VAIFIKPKSVESIMEMNKRM--------TEEQAKKMYDRSMKME--- 182 (225)
Q Consensus 123 -~gk~~ildv~~~g---vk~----L~~~~~~P-i~IFI~pps~~~L~~L~~R~--------seeei~~rl~~a~k~E--- 182 (225)
.+.-+|+|--|.. ++. +...+..| .+|++..|....++++..|. +++.+.+|+....+.-
T Consensus 76 ~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i 155 (188)
T PRK14532 76 EAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPL 155 (188)
T ss_pred CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2456788854422 222 22334567 78899887644445576653 2566778887664211
Q ss_pred -HhhCC-CCcEEEEC-CCHHHHHHHHHHHHH
Q psy10228 183 -QEFGE-FFTAVVQG-DMPEDIYQKVKEVIQ 210 (225)
Q Consensus 183 -~~~~~-~fd~vI~N-ddleea~~~lk~iI~ 210 (225)
..|.. .....|.. .++++.+++|...|.
T Consensus 156 ~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 156 LPYYAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred HHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 12222 12233333 479999999988875
No 54
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.26 E-value=9.5e-05 Score=57.81 Aligned_cols=108 Identities=14% Similarity=0.234 Sum_probs=59.8
Q ss_pred cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEE---EEeCCcceeecHHHHHHHHHcCCeEE
Q psy10228 52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEA---GQYNDNLYGTSVASVRDVAEKGKHCI 128 (225)
Q Consensus 52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~---~~~~gn~YGTs~~sV~~v~~~gk~~i 128 (225)
+|+++||+|||||+..-+-.+ ..| +.++ +.+.+...+.....-.. ....+..+..-...++..++.|..+|
T Consensus 1 lii~~G~pgsGKSt~a~~l~~---~~~--~~~i-~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v 74 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK---RLG--AVVI-SQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVV 74 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH---HST--EEEE-EHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEE
T ss_pred CEEEECCCCCCHHHHHHHHHH---HCC--CEEE-eHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCce
Confidence 489999999999922211110 011 6788 88888877765332211 11122344455567778889999999
Q ss_pred EEcc---HHHHHHHHh----hccCCeEEEEecCCHHHHHH-HhccC
Q psy10228 129 LDVS---GNAIKRLQV----ASLYPVAIFIKPKSVESIME-MNKRM 166 (225)
Q Consensus 129 ldv~---~~gvk~L~~----~~~~Pi~IFI~pps~~~L~~-L~~R~ 166 (225)
+|-. ......+.. .+....+|++.++. +.+.+ +..|.
T Consensus 75 vd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~-~~~~~R~~~R~ 119 (143)
T PF13671_consen 75 VDNTNLSREERARLRELARKHGYPVRVVYLDAPE-ETLRERLAQRN 119 (143)
T ss_dssp EESS--SHHHHHHHHHHHHHCTEEEEEEEECHHH-HHHHHHHHTTH
T ss_pred eccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCH-HHHHHHHHhcC
Confidence 9832 222222211 12223678888765 44443 66554
No 55
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.0017 Score=54.29 Aligned_cols=146 Identities=14% Similarity=0.179 Sum_probs=76.3
Q ss_pred EEEEccCCCCCC------------CcccC--CCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcce-eecHHHH
Q psy10228 53 FMLCYTQDDPTT------------EDTTR--ARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY-GTSVASV 117 (225)
Q Consensus 53 ivl~GpsgsGK~------------s~TTR--p~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~Y-GTs~~sV 117 (225)
|+|+|||||||+ +|-+. --|++-..+.. --.+....++.|+++ .++.+ |+-...+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~-----lg~~~k~~i~~g~lv-----~d~i~~~~v~~rl 72 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTE-----LGEEIKKYIDKGELV-----PDEIVNGLVKERL 72 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCCh-----HHHHHHHHHHcCCcc-----chHHHHHHHHHHH
Confidence 799999999999 44431 11222222211 011222234445533 33334 4444444
Q ss_pred HHHHHcCCeEEEEccHHHH---HHHHh----hccC-CeEEEEecCCHHHHHHHhccC-----CHHHHHHHHHHHHHHHHh
Q psy10228 118 RDVAEKGKHCILDVSGNAI---KRLQV----ASLY-PVAIFIKPKSVESIMEMNKRM-----TEEQAKKMYDRSMKMEQE 184 (225)
Q Consensus 118 ~~v~~~gk~~ildv~~~gv---k~L~~----~~~~-Pi~IFI~pps~~~L~~L~~R~-----seeei~~rl~~a~k~E~~ 184 (225)
...-..+ .+|+|--|.-+ +.|+. .+.. ..++.+.+|....+.++..|. +++.+++|+....+....
T Consensus 73 ~~~d~~~-~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~~~p 151 (178)
T COG0563 73 DEADCKA-GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVREDDNEETVKKRLKVYHEQTAP 151 (178)
T ss_pred HhhcccC-eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccccccCCHHHHHHHHHHHHhcccc
Confidence 4442223 67777654333 22322 1212 378999988733344566664 578889888877432111
Q ss_pred hCCCCcEEEECC-CHHHHHHHHHHHH
Q psy10228 185 FGEFFTAVVQGD-MPEDIYQKVKEVI 209 (225)
Q Consensus 185 ~~~~fd~vI~Nd-dleea~~~lk~iI 209 (225)
...+|...|... .+++.++.+...+
T Consensus 152 li~~y~~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 152 LIEYYSVTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred hhhhheeeccCCCCHHHHHHHHHHhh
Confidence 223444334433 6889888887765
No 56
>PRK13975 thymidylate kinase; Provisional
Probab=97.23 E-value=0.001 Score=54.97 Aligned_cols=71 Identities=13% Similarity=0.256 Sum_probs=38.4
Q ss_pred CC-eEEEEecCCHHHHHHHhccCC----HHHHHHHHHHHH-HHHH--hhCCCCcEEEEC-C--CHHHHHHHHHHHHHhcc
Q psy10228 145 YP-VAIFIKPKSVESIMEMNKRMT----EEQAKKMYDRSM-KMEQ--EFGEFFTAVVQG-D--MPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 145 ~P-i~IFI~pps~~~L~~L~~R~s----eeei~~rl~~a~-k~E~--~~~~~fd~vI~N-d--dleea~~~lk~iI~~~~ 213 (225)
.| .+||+.++.-..++++..|.. ..+..+++.... ++.. .+.+.+..+++| + ++++++++|.+.|....
T Consensus 113 ~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~ 192 (196)
T PRK13975 113 KPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEKYLELANNEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKI 192 (196)
T ss_pred CCCEEEEEcCCHHHHHHHHhccCccccchHHHHHHHHHHHHHHHhhcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 45 678888764444445776652 223222332221 1111 122233344443 2 79999999999998776
Q ss_pred CC
Q psy10228 214 GP 215 (225)
Q Consensus 214 ~~ 215 (225)
+.
T Consensus 193 ~~ 194 (196)
T PRK13975 193 PD 194 (196)
T ss_pred Cc
Confidence 54
No 57
>PLN02200 adenylate kinase family protein
Probab=97.19 E-value=0.0018 Score=56.31 Aligned_cols=155 Identities=10% Similarity=0.116 Sum_probs=78.8
Q ss_pred ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE------eCCcceeec--HHHHHHHHH
Q psy10228 51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ------YNDNLYGTS--VASVRDVAE 122 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~------~~gn~YGTs--~~sV~~v~~ 122 (225)
..|+|+||+||||++.-.+-.+ .-|.. .+++-+-+.+.+..+... +. -.|..|... ...+.+.++
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~---~~g~~--his~gdllR~~i~~~s~~--~~~i~~~~~~G~~vp~e~~~~~l~~~l~ 116 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVE---TFGFK--HLSAGDLLRREIASNSEH--GAMILNTIKEGKIVPSEVTVKLIQKEME 116 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHH---HhCCe--EEEccHHHHHHHhccChh--HHHHHHHHHcCCCCcHHHHHHHHHHHHh
Confidence 4689999999999944332221 11322 232334444433322110 00 013333321 112333333
Q ss_pred c--CCeEEEEccHHHHHH---HHh-hccCC-eEEEEecCCHHHHHHHhccC------CHHHHHHHHHHHHHHHH----hh
Q psy10228 123 K--GKHCILDVSGNAIKR---LQV-ASLYP-VAIFIKPKSVESIMEMNKRM------TEEQAKKMYDRSMKMEQ----EF 185 (225)
Q Consensus 123 ~--gk~~ildv~~~gvk~---L~~-~~~~P-i~IFI~pps~~~L~~L~~R~------seeei~~rl~~a~k~E~----~~ 185 (225)
. +...|||--|....+ +.. .+..| .+||+..|.-..+.++.+|. +++.+++|++...+.-. .|
T Consensus 117 ~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y 196 (234)
T PLN02200 117 SSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYY 196 (234)
T ss_pred cCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 345678865533322 211 23456 77888887644455576663 24677788876543222 22
Q ss_pred CCCCc-EEEECC-CHHHHHHHHHHHHHhc
Q psy10228 186 GEFFT-AVVQGD-MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 186 ~~~fd-~vI~Nd-dleea~~~lk~iI~~~ 212 (225)
...-. ++|.++ ++++.++.|..++...
T Consensus 197 ~~~~~~~~IDa~~~~eeV~~~v~~~l~~~ 225 (234)
T PLN02200 197 SKKGKLYTINAVGTVDEIFEQVRPIFAAC 225 (234)
T ss_pred HhcCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 22212 344444 7999999999988754
No 58
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.17 E-value=0.0039 Score=53.32 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=49.4
Q ss_pred CCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC--CHHHHHHHHHHHHHhc
Q psy10228 145 YPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 145 ~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~~~ 212 (225)
+-.+|+|.+|....++++..| .+++++.+|++.-.- +.+.....|+||.|+ +++++..++.+++...
T Consensus 129 ~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~~ri~~Q~~-~eek~~~aD~VI~N~g~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 129 LKKVIVIKADLETRIRRLMERDGKNRQQAVAFINLQIS-DKEREKIADFVIDNTELTDQELESKLITTINEI 199 (204)
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhCCC-HHHHHHhCCEEEECcCCCHHHHHHHHHHHHHHH
Confidence 456899998877777786655 378899888865321 123346789999987 5799999999888765
No 59
>PRK13808 adenylate kinase; Provisional
Probab=97.17 E-value=0.0038 Score=57.23 Aligned_cols=87 Identities=14% Similarity=0.132 Sum_probs=50.1
Q ss_pred eEEEEccHHHHHHHH-------hhccCC-eEEEEecCCHHHHHHHhcc------------C--CHHHHHHHHHHHHHHHH
Q psy10228 126 HCILDVSGNAIKRLQ-------VASLYP-VAIFIKPKSVESIMEMNKR------------M--TEEQAKKMYDRSMKMEQ 183 (225)
Q Consensus 126 ~~ildv~~~gvk~L~-------~~~~~P-i~IFI~pps~~~L~~L~~R------------~--seeei~~rl~~a~k~E~ 183 (225)
-.|||--|.-+.+.. ..++.| ++|||..|.-..+.++..| . +++.+.+|+....+...
T Consensus 80 G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~ 159 (333)
T PRK13808 80 GFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTE 159 (333)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhH
Confidence 357786553332222 223566 7888888765555566554 2 35778888866543211
Q ss_pred ---h-hCCC-CcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228 184 ---E-FGEF-FTAVVQGD-MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 184 ---~-~~~~-fd~vI~Nd-dleea~~~lk~iI~~~ 212 (225)
+ |.+. .-++|..+ ++|+.+.+|..+|...
T Consensus 160 PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~ 194 (333)
T PRK13808 160 PLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAV 194 (333)
T ss_pred HHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHH
Confidence 1 2221 11233333 7899999999999754
No 60
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.16 E-value=0.002 Score=54.74 Aligned_cols=66 Identities=9% Similarity=0.115 Sum_probs=47.3
Q ss_pred CeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228 146 PVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 146 Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~ 212 (225)
..+|+|.+|....+++|.+|. +++++.+|++.....+ .....+|++|.|+ +++++..++..++...
T Consensus 135 d~ii~V~a~~e~~~~Rl~~R~~~s~e~~~~Ri~~q~~~~-~~~~~ad~vI~N~g~~e~l~~~i~~~~~~~ 203 (208)
T PRK14731 135 DFIVVVAADTELRLERAVQRGMGSREEIRRRIAAQWPQE-KLIERADYVIYNNGTLDELKAQTEQLYQVL 203 (208)
T ss_pred CeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcCChH-HHHHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 466777776544455577664 6789999987653322 2235689999997 7999999999988754
No 61
>PRK14527 adenylate kinase; Provisional
Probab=97.13 E-value=0.0033 Score=52.29 Aligned_cols=63 Identities=16% Similarity=0.317 Sum_probs=37.7
Q ss_pred eEEEEecCCHHHHHHHhccC--------CHHHHHHHHHHHHHHHH----hhCCC-CcEEEEC-CCHHHHHHHHHHHH
Q psy10228 147 VAIFIKPKSVESIMEMNKRM--------TEEQAKKMYDRSMKMEQ----EFGEF-FTAVVQG-DMPEDIYQKVKEVI 209 (225)
Q Consensus 147 i~IFI~pps~~~L~~L~~R~--------seeei~~rl~~a~k~E~----~~~~~-fd~vI~N-ddleea~~~lk~iI 209 (225)
.+||+..|....+.++.+|. +++.+++|++...+.-. .|.+. .-..|.. .++++.+++|...|
T Consensus 114 ~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 114 AVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred EEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 46888887644444576664 35667888877643111 23221 2233443 37999999998765
No 62
>PRK03839 putative kinase; Provisional
Probab=97.09 E-value=0.017 Score=47.36 Aligned_cols=147 Identities=14% Similarity=0.079 Sum_probs=68.4
Q ss_pred cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHH---cCCeEE
Q psy10228 52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAE---KGKHCI 128 (225)
Q Consensus 52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~---~gk~~i 128 (225)
.|+|+|++|||||+.--+-. +.- .|.|+ +-+++-.. .. ++...+...-.....+...+. .+..+|
T Consensus 2 ~I~l~G~pGsGKsT~~~~La---~~~--~~~~i-d~d~~~~~---~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~vI 69 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLA---EKL--GYEYV-DLTEFALK---KG---IGEEKDDEMEIDFDKLAYFIEEEFKEKNVV 69 (180)
T ss_pred EEEEECCCCCCHHHHHHHHH---HHh--CCcEE-ehhhhhhh---cC---CcccCChhhhcCHHHHHHHHHHhccCCCEE
Confidence 48999999999992211111 111 34566 33333211 11 111111111122333433332 245577
Q ss_pred EEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCC-HHHHH----HHHHHHHHHHHhhCCCCcEEEEC--CCHHHH
Q psy10228 129 LDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMT-EEQAK----KMYDRSMKMEQEFGEFFTAVVQG--DMPEDI 201 (225)
Q Consensus 129 ldv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~s-eeei~----~rl~~a~k~E~~~~~~fd~vI~N--ddleea 201 (225)
+|..... +. ....+||+.++....++++..|.. ...+. ..+......+.-......++|.. .+++++
T Consensus 70 idG~~~~---l~---~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~Id~~~~s~eev 143 (180)
T PRK03839 70 LDGHLSH---LL---PVDYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEEKEKVIEVDTTGKTPEEV 143 (180)
T ss_pred EEecccc---cc---CCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHH
Confidence 7754321 11 123678888754343445776652 22221 11111101111111222345554 379999
Q ss_pred HHHHHHHHHhccCCc
Q psy10228 202 YQKVKEVIQEQSGPS 216 (225)
Q Consensus 202 ~~~lk~iI~~~~~~~ 216 (225)
++++..+|.....++
T Consensus 144 ~~~I~~~l~~~~~~~ 158 (180)
T PRK03839 144 VEEILELIKSGKKRK 158 (180)
T ss_pred HHHHHHHHhcCCCCC
Confidence 999999998765554
No 63
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.05 E-value=0.0054 Score=55.09 Aligned_cols=84 Identities=12% Similarity=0.213 Sum_probs=44.6
Q ss_pred eEEEEccH--------HHHHHHHhhccCCeEEEEecCCHHHHH-HHhc-c-C----CHHHHHHHHHHHHHHHH-hhCCCC
Q psy10228 126 HCILDVSG--------NAIKRLQVASLYPVAIFIKPKSVESIM-EMNK-R-M----TEEQAKKMYDRSMKMEQ-EFGEFF 189 (225)
Q Consensus 126 ~~ildv~~--------~gvk~L~~~~~~Pi~IFI~pps~~~L~-~L~~-R-~----seeei~~rl~~a~k~E~-~~~~~f 189 (225)
.+++|+-. +.+..|+..+....+||+.++. +.|. ++.. | . ...++.+.+..- +... .+....
T Consensus 59 av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~-e~L~~Rl~~~rr~RPLl~~~~l~e~I~~e-R~~l~pl~~~A 136 (288)
T PRK05416 59 AVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASD-EVLIRRYSETRRRHPLSGDGSLLEGIELE-RELLAPLRERA 136 (288)
T ss_pred EEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCH-HHHHHHHhhcccCCCccCCccHHHHHHHH-HhhhhhHHHhC
Confidence 45667632 2334444444444679999865 5554 4542 1 1 111111111111 1011 123457
Q ss_pred cEEEECC--CHHHHHHHHHHHHHh
Q psy10228 190 TAVVQGD--MPEDIYQKVKEVIQE 211 (225)
Q Consensus 190 d~vI~Nd--dleea~~~lk~iI~~ 211 (225)
|++|.++ +++++.++|...+..
T Consensus 137 DivIDTs~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 137 DLVIDTSELSVHQLRERIRERFGG 160 (288)
T ss_pred CEEEECCCCCHHHHHHHHHHHHhc
Confidence 8999876 689999999998865
No 64
>PRK06696 uridine kinase; Validated
Probab=97.03 E-value=0.0037 Score=53.43 Aligned_cols=76 Identities=20% Similarity=0.183 Sum_probs=39.5
Q ss_pred HcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhcc-----CCH-HHHHHHHHHHHHHHHhh------CCCC
Q psy10228 122 EKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKR-----MTE-EQAKKMYDRSMKMEQEF------GEFF 189 (225)
Q Consensus 122 ~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R-----~se-eei~~rl~~a~k~E~~~------~~~f 189 (225)
..+.++|+|.- .+..-....++..+|||.+|.-..++++..| ++. +.......+....|..| ....
T Consensus 126 ~~~~vviveg~--~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~~~~~~~~~~~r~~~~~~~y~~~~~p~~~A 203 (223)
T PRK06696 126 APNAVLIVDGT--FLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSYEEAEKMYLARYHPAQKLYIAEANPKERA 203 (223)
T ss_pred CCCCEEEEecH--HHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCCchHHHHHHHHHHhHHHHHHHhhcChHhhC
Confidence 34556665543 2212222345678999999875445554443 332 22222222222222333 3579
Q ss_pred cEEEECCCHH
Q psy10228 190 TAVVQGDMPE 199 (225)
Q Consensus 190 d~vI~Nddle 199 (225)
|+||.|++++
T Consensus 204 Divi~n~~~~ 213 (223)
T PRK06696 204 DVVIDNSDPA 213 (223)
T ss_pred eEEEECCCCC
Confidence 9999998754
No 65
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=96.99 E-value=0.0051 Score=54.01 Aligned_cols=82 Identities=15% Similarity=0.183 Sum_probs=59.0
Q ss_pred CeEEEEccHHHHHHHHhhc----cCCeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHhhCCCCcEEEECC--
Q psy10228 125 KHCILDVSGNAIKRLQVAS----LYPVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-- 196 (225)
Q Consensus 125 k~~ildv~~~gvk~L~~~~----~~Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-- 196 (225)
..|++|+-. |-.++ +...+|+|.+|....+++|.+|. +++++.+|++.... ..+....+|+||.|+
T Consensus 118 ~~vv~evPL-----L~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~g~s~eea~~Ri~~Q~~-~~ek~~~aD~VI~N~~~ 191 (244)
T PTZ00451 118 LIVVLDAPT-----LFETKTFTYFVSASVVVSCSEERQIERLRKRNGFSKEEALQRIGSQMP-LEEKRRLADYIIENDSA 191 (244)
T ss_pred CEEEEEech-----hhccCchhhcCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhCCC-HHHHHHhCCEEEECCCC
Confidence 478888764 22222 33578999887666666776663 78999999876322 233457899999998
Q ss_pred -CHHHHHHHHHHHHHhc
Q psy10228 197 -MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 197 -dleea~~~lk~iI~~~ 212 (225)
|++++..++..++...
T Consensus 192 g~~~~L~~~v~~~~~~~ 208 (244)
T PTZ00451 192 DDLDELRGSVCDCVAWM 208 (244)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 7999999999988653
No 66
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.98 E-value=0.0003 Score=63.53 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=53.8
Q ss_pred ccEEEEccCCCCCC-------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEE-E
Q psy10228 51 EPFMLCYTQDDPTT-------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAG-Q 104 (225)
Q Consensus 51 ~~ivl~GpsgsGK~-------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~-~ 104 (225)
.+|+|+||+||||| +..|-+|-..|..|+.||++ + +++-. .
T Consensus 5 ~ii~I~GpTasGKS~LAl~LA~~~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhli-d------------~~~p~e~ 71 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFHFPKGKAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLV-D------------FLEPIKE 71 (300)
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeee-e------------ccCCCCc
Confidence 37999999999999 77888888889999999998 3 22222 2
Q ss_pred eC-CcceeecHHHHHHHHHcCCeEEEEccHHH
Q psy10228 105 YN-DNLYGTSVASVRDVAEKGKHCILDVSGNA 135 (225)
Q Consensus 105 ~~-gn~YGTs~~sV~~v~~~gk~~ildv~~~g 135 (225)
|+ +.+.--..+.|+++...|+.+|+. .+.|
T Consensus 72 ~sv~~f~~~a~~~i~~i~~~gk~Pilv-GGTg 102 (300)
T PRK14729 72 YNLGIFYKEALKIIKELRQQKKIPIFV-GGSA 102 (300)
T ss_pred eeHHHHHHHHHHHHHHHHHCCCCEEEE-eCch
Confidence 33 455667788899999999987764 4444
No 67
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.97 E-value=0.0075 Score=50.94 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHH----HHhhCCCCcEEEEC--CCHHHHHHHHHHHH
Q psy10228 168 EEQAKKMYDRSMKM----EQEFGEFFTAVVQG--DMPEDIYQKVKEVI 209 (225)
Q Consensus 168 eeei~~rl~~a~k~----E~~~~~~fd~vI~N--ddleea~~~lk~iI 209 (225)
++.+++|+....+. ...|....-++.+| .++++.++.|.++|
T Consensus 162 ~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 162 EEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 57788888886431 11222221233333 37999999998876
No 68
>PRK13948 shikimate kinase; Provisional
Probab=96.97 E-value=0.013 Score=49.05 Aligned_cols=146 Identities=13% Similarity=0.092 Sum_probs=73.0
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEE-EEEEeCCccee--ecHHHHHHHHHcCCe
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFI-EAGQYNDNLYG--TSVASVRDVAEKGKH 126 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~Fi-E~~~~~gn~YG--Ts~~sV~~v~~~gk~ 126 (225)
...|+|+|.+|||||+.--+-. +.- .+.||++...+++.. |.-+ +...-.|..|- .-.+.+++++..+ .
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La---~~l--g~~~iD~D~~ie~~~--g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~-~ 81 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELS---RAL--MLHFIDTDRYIERVT--GKSIPEIFRHLGEAYFRRCEAEVVRRLTRLD-Y 81 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHH---HHc--CCCEEECCHHHHHHH--hCCHHHHHHHhCHHHHHHHHHHHHHHHHhcC-C
Confidence 4689999999999992211110 001 234663333333322 1000 00001121111 2223355555544 3
Q ss_pred EEEEc------cHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC----C----HHHHHHHHHHHHHHHHhhCCCCcE
Q psy10228 127 CILDV------SGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM----T----EEQAKKMYDRSMKMEQEFGEFFTA 191 (225)
Q Consensus 127 ~ildv------~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~----s----eeei~~rl~~a~k~E~~~~~~fd~ 191 (225)
+|+.+ +++..+.|+. ...+|||..+ .+.|.+ +..+. . .+++.+.+++- +.-| ...|+
T Consensus 82 ~VIa~GgG~v~~~~n~~~l~~---~g~vV~L~~~-~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R---~~~Y-~~a~~ 153 (182)
T PRK13948 82 AVISLGGGTFMHEENRRKLLS---RGPVVVLWAS-PETIYERTRPGDRPLLQVEDPLGRIRTLLNER---EPVY-RQATI 153 (182)
T ss_pred eEEECCCcEEcCHHHHHHHHc---CCeEEEEECC-HHHHHHHhcCCCCCCCCCCChHHHHHHHHHHH---HHHH-HhCCE
Confidence 45543 4444444542 3568899865 566654 64321 1 12344333321 3345 34899
Q ss_pred EEECC--CHHHHHHHHHHHHHh
Q psy10228 192 VVQGD--MPEDIYQKVKEVIQE 211 (225)
Q Consensus 192 vI~Nd--dleea~~~lk~iI~~ 211 (225)
+|.++ +.++++.+|.+.+..
T Consensus 154 ~i~t~~~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 154 HVSTDGRRSEEVVEEIVEKLWA 175 (182)
T ss_pred EEECCCCCHHHHHHHHHHHHHH
Confidence 98866 588999999888865
No 69
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.94 E-value=0.017 Score=48.97 Aligned_cols=45 Identities=11% Similarity=0.202 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHH----HHhhCCCCcEE-EEC-CCHHHHHHHHHHHHHh
Q psy10228 167 TEEQAKKMYDRSMKM----EQEFGEFFTAV-VQG-DMPEDIYQKVKEVIQE 211 (225)
Q Consensus 167 seeei~~rl~~a~k~----E~~~~~~fd~v-I~N-ddleea~~~lk~iI~~ 211 (225)
+++.+++||....+. ...|.+..-++ |.. .+.++.+..|..+|..
T Consensus 164 ~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 164 NEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred CHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 367889998876532 12232221133 332 3799999999998864
No 70
>KOG1384|consensus
Probab=96.93 E-value=0.0012 Score=60.06 Aligned_cols=80 Identities=11% Similarity=0.129 Sum_probs=58.7
Q ss_pred CccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEE
Q psy10228 50 QEPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAG 103 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~ 103 (225)
..++||+|++||||+ ..+|-++=..|..|+.+|-+ ..-..+...
T Consensus 7 ~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLl-g~l~~~~e~--------- 76 (348)
T KOG1384|consen 7 DKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLL-GHLHPEAEY--------- 76 (348)
T ss_pred ceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHh-CcCChHhhc---------
Confidence 458999999999998 77888888889999998865 332222221
Q ss_pred EeCCcceeecHHHHHHHHHcCCeEEEEcc-HHHHHHHH
Q psy10228 104 QYNDNLYGTSVASVRDVAEKGKHCILDVS-GNAIKRLQ 140 (225)
Q Consensus 104 ~~~gn~YGTs~~sV~~v~~~gk~~ildv~-~~gvk~L~ 140 (225)
..+.++-+...+|++++..|+..|+.-. .-.++.|-
T Consensus 77 -t~~~F~~~a~~aie~I~~rgk~PIv~GGs~~yi~al~ 113 (348)
T KOG1384|consen 77 -TAGEFEDDASRAIEEIHSRGKLPIVVGGSNSYLQALL 113 (348)
T ss_pred -cHHHHHHHHHHHHHHHHhCCCCCEEeCCchhhHHHHh
Confidence 2345677789999999999999887643 34444443
No 71
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.91 E-value=0.0051 Score=52.75 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=36.1
Q ss_pred cCCeEEEEecCCHHHHHHHhcc-----CCHHHHHHHHHHHH--HH--HHhhCCCCcEEEECCC
Q psy10228 144 LYPVAIFIKPKSVESIMEMNKR-----MTEEQAKKMYDRSM--KM--EQEFGEFFTAVVQGDM 197 (225)
Q Consensus 144 ~~Pi~IFI~pps~~~L~~L~~R-----~seeei~~rl~~a~--k~--E~~~~~~fd~vI~Ndd 197 (225)
..-.+|||.+|....++++..| .+++++.+++...+ .. ........|+||.|+.
T Consensus 160 ~~D~vi~v~~~~~~~~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~~ 222 (229)
T PRK09270 160 LFDFTIFLDAPAEVLRERLVARKLAGGLSPEAAEAFVLRNDGPNARLVLETSRPADLVLEMTA 222 (229)
T ss_pred hCCEEEEEECCHHHHHHHHHHHHHhcCCCHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEecC
Confidence 4458899999876666665555 37888888886421 11 1234578999999874
No 72
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.91 E-value=0.0012 Score=54.04 Aligned_cols=148 Identities=10% Similarity=0.073 Sum_probs=68.4
Q ss_pred CccEEEEccCCCCCCC------cccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeC-CcceeecHHHHHH-HH
Q psy10228 50 QEPFMLCYTQDDPTTE------DTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYN-DNLYGTSVASVRD-VA 121 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s------~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~-gn~YGTs~~sV~~-v~ 121 (225)
...|+|+|++|||||+ ...++ .|.+..|+ +.+.+.+.+..+.- +..-. ...+... ..+.. ..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~------~g~~v~~i-d~D~~~~~~~~~~~--~~~~~r~~~~~~~-~~~a~~~~ 73 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE------AGYPVEVL-DGDAVRTNLSKGLG--FSKEDRDTNIRRI-GFVANLLT 73 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEE-cCccHHHHHhcCCC--CChhhHHHHHHHH-HHHHHHHH
Confidence 3489999999999991 11111 24556777 45555443322110 00000 0001100 11111 23
Q ss_pred HcCCeEEEEcc-H--HHHHHHHhhccCCeEEEEecCCHHHHHHHhccC-----CHHHHHHHHHHHHHHHHhhC-CCCcEE
Q psy10228 122 EKGKHCILDVS-G--NAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM-----TEEQAKKMYDRSMKMEQEFG-EFFTAV 192 (225)
Q Consensus 122 ~~gk~~ildv~-~--~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~-----seeei~~rl~~a~k~E~~~~-~~fd~v 192 (225)
..|.+|+++.. + ...+.++...-...+|||..| .+.+.+-..|. ..+++..++... +.-+. ...|.+
T Consensus 74 ~~g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~-~e~~~~R~~~~l~~~~~~~~i~~~~~~~---~~~~~p~~ad~~ 149 (175)
T PRK00889 74 RHGVIVLVSAISPYRETREEVRANIGNFLEVFVDAP-LEVCEQRDVKGLYAKARAGEIKHFTGID---DPYEPPLNPEVE 149 (175)
T ss_pred hCCCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCC-HHHHHHhCcccHHHHHHcCCCCCCcccC---CCCCCCCCCcEE
Confidence 55888887743 2 222333322112367889876 45443211110 001111111110 11122 235676
Q ss_pred EECC--CHHHHHHHHHHHHHh
Q psy10228 193 VQGD--MPEDIYQKVKEVIQE 211 (225)
Q Consensus 193 I~Nd--dleea~~~lk~iI~~ 211 (225)
|..+ +++++++++.+.|..
T Consensus 150 i~~~~~~~~~~~~~i~~~l~~ 170 (175)
T PRK00889 150 CRTDLESLEESVDKVLQKLEE 170 (175)
T ss_pred EECCCCCHHHHHHHHHHHHHH
Confidence 6543 699999999999875
No 73
>PLN02422 dephospho-CoA kinase
Probab=96.89 E-value=0.0084 Score=52.30 Aligned_cols=89 Identities=19% Similarity=0.271 Sum_probs=63.6
Q ss_pred CeEEEEccHHHHHHHHhhc---cCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CH
Q psy10228 125 KHCILDVSGNAIKRLQVAS---LYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MP 198 (225)
Q Consensus 125 k~~ildv~~~gvk~L~~~~---~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dl 198 (225)
+.+++|+-. |-..+ .+-.+|||.+|....+++|.+| .+.+++.+|+++-.-.| ......|++|.|+ ++
T Consensus 108 ~~vv~eipL-----L~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~g~s~eea~~Ri~~Q~~~e-ek~~~AD~VI~N~gs~ 181 (232)
T PLN02422 108 KVIVLDIPL-----LFETKMDKWTKPVVVVWVDPETQLERLMARDGLSEEQARNRINAQMPLD-WKRSKADIVIDNSGSL 181 (232)
T ss_pred CEEEEEehh-----hhhcchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcCChh-HHHhhCCEEEECCCCH
Confidence 467777654 22222 3457899999876666677665 37899988886532111 2246789999998 89
Q ss_pred HHHHHHHHHHHHhccCCceee
Q psy10228 199 EDIYQKVKEVIQEQSGPSIWV 219 (225)
Q Consensus 199 eea~~~lk~iI~~~~~~~~WV 219 (225)
+++..++..+++....|-.|-
T Consensus 182 e~L~~qv~~ll~~l~~~~~~~ 202 (232)
T PLN02422 182 EDLKQQFQKVLEKIRAPLTWK 202 (232)
T ss_pred HHHHHHHHHHHHHHhcchHHH
Confidence 999999999999988888884
No 74
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.88 E-value=0.0084 Score=54.06 Aligned_cols=154 Identities=12% Similarity=0.160 Sum_probs=76.6
Q ss_pred CCCCccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEE-EE-EeCC-cceeecHHHHHHHHHc
Q psy10228 47 GSDQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIE-AG-QYND-NLYGTSVASVRDVAEK 123 (225)
Q Consensus 47 ~~~~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE-~~-~~~g-n~YGTs~~sV~~v~~~ 123 (225)
.+....|+|+|++||||++.--.- .|.-|. .|++....+++. .|.-+. .. .++. .+.-.-...+.+.+..
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~L---a~~Lg~--~~id~D~~i~~~--~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~ 202 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRML---AARLGV--PFVELNREIERE--AGLSVSEIFALYGQEGYRRLERRALERLIAE 202 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHH---HHHcCC--CEEeHHHHHHHH--hCCCHHHHHHHHCHHHHHHHHHHHHHHHHhh
Confidence 344568999999999999211110 011133 344223333322 111000 00 0111 1222333445555554
Q ss_pred CCeEEEEccHHH------HHHHHhhccCCeEEEEecCCHHHHHHHhccC------C----HHHHHHHHHHHHHHHHhhCC
Q psy10228 124 GKHCILDVSGNA------IKRLQVASLYPVAIFIKPKSVESIMEMNKRM------T----EEQAKKMYDRSMKMEQEFGE 187 (225)
Q Consensus 124 gk~~ildv~~~g------vk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~------s----eeei~~rl~~a~k~E~~~~~ 187 (225)
...+|+...+.. ...+. ...++|||.+|--..++++.+|. + .+.++++...- +.-| .
T Consensus 203 ~~~~VI~~Ggg~v~~~~~~~~l~---~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R---~~~y-~ 275 (309)
T PRK08154 203 HEEMVLATGGGIVSEPATFDLLL---SHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASR---EPLY-A 275 (309)
T ss_pred CCCEEEECCCchhCCHHHHHHHH---hCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHH---HHHH-H
Confidence 444565543221 12222 24578999987433344565543 1 24454443322 2222 4
Q ss_pred CCcEEEECC--CHHHHHHHHHHHHHhccC
Q psy10228 188 FFTAVVQGD--MPEDIYQKVKEVIQEQSG 214 (225)
Q Consensus 188 ~fd~vI~Nd--dleea~~~lk~iI~~~~~ 214 (225)
.+|++|.|+ ++++++++|..+|...-+
T Consensus 276 ~ad~~I~t~~~s~ee~~~~I~~~l~~~~~ 304 (309)
T PRK08154 276 RADAVVDTSGLTVAQSLARLRELVRPALG 304 (309)
T ss_pred hCCEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 589988877 689999999999876533
No 75
>PLN02924 thymidylate kinase
Probab=96.81 E-value=0.0051 Score=53.02 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCeEEEEccHH------H--------HHHHHhhccCC-eEEEEecCCHHHHHHHhccCC---HHHHHHHH
Q psy10228 114 VASVRDVAEKGKHCILDVSGN------A--------IKRLQVASLYP-VAIFIKPKSVESIMEMNKRMT---EEQAKKMY 175 (225)
Q Consensus 114 ~~sV~~v~~~gk~~ildv~~~------g--------vk~L~~~~~~P-i~IFI~pps~~~L~~L~~R~s---eeei~~rl 175 (225)
...|...++.|+++|+|=-.. + +..+...-..| ++||+..|--..+++...+.. ..+..+++
T Consensus 90 ~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~~~~E~~~~~~rv 169 (220)
T PLN02924 90 RSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGERYEKLEFQKKV 169 (220)
T ss_pred HHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccccHHHHHHH
Confidence 355777888999999984221 1 11122111236 788888754333433332221 22333444
Q ss_pred HHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228 176 DRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 176 ~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~ 211 (225)
..+. +.+...-..+|.++ ++++..++|.++|..
T Consensus 170 ~~~Y---~~la~~~~~vIDa~~sieeV~~~I~~~I~~ 203 (220)
T PLN02924 170 AKRF---QTLRDSSWKIIDASQSIEEVEKKIREVVLD 203 (220)
T ss_pred HHHH---HHHhhcCEEEECCCCCHHHHHHHHHHHHHH
Confidence 4432 12222222344333 799999999888876
No 76
>PLN02748 tRNA dimethylallyltransferase
Probab=96.80 E-value=0.00063 Score=64.94 Aligned_cols=72 Identities=8% Similarity=0.153 Sum_probs=54.9
Q ss_pred CCCCCccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcE
Q psy10228 46 DGSDQEPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLF 99 (225)
Q Consensus 46 ~~~~~~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~F 99 (225)
.++...+|+|+||+||||| +..|-+|-..|..|+.||++ + +
T Consensus 18 ~~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLi-d------------~ 84 (468)
T PLN02748 18 QKGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLL-G------------V 84 (468)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeE-e------------e
Confidence 4455668999999999999 67888888889999999998 3 3
Q ss_pred EEEE-EeC-CcceeecHHHHHHHHHcCCeEEEE
Q psy10228 100 IEAG-QYN-DNLYGTSVASVRDVAEKGKHCILD 130 (225)
Q Consensus 100 iE~~-~~~-gn~YGTs~~sV~~v~~~gk~~ild 130 (225)
+... .|+ +.+.--....|+++..+|+.+||.
T Consensus 85 v~p~e~ysv~~F~~~A~~~I~~I~~rgk~PIlV 117 (468)
T PLN02748 85 ISPSVEFTAKDFRDHAVPLIEEILSRNGLPVIV 117 (468)
T ss_pred cCCCCcCcHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 3222 132 455666788899999999987765
No 77
>PRK13973 thymidylate kinase; Provisional
Probab=96.73 E-value=0.011 Score=50.34 Aligned_cols=97 Identities=14% Similarity=0.231 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCeEEEEccH------HH---------HHHHHhh---ccCC-eEEEEecCCHHHHHHHhccCC-------H
Q psy10228 115 ASVRDVAEKGKHCILDVSG------NA---------IKRLQVA---SLYP-VAIFIKPKSVESIMEMNKRMT-------E 168 (225)
Q Consensus 115 ~sV~~v~~~gk~~ildv~~------~g---------vk~L~~~---~~~P-i~IFI~pps~~~L~~L~~R~s-------e 168 (225)
..|...+++|+++|.|--. +| +..|... ...| .+||+..|.-..++++.+|.. +
T Consensus 80 ~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e 159 (213)
T PRK13973 80 EVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFE 159 (213)
T ss_pred HHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchh
Confidence 3466678889999988421 11 2223221 1346 788998875444555666531 1
Q ss_pred ----HHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228 169 ----EQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 169 ----eei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~ 212 (225)
+-.+++.+...++--.+...+ .+|.++ ++++..++|..+|...
T Consensus 160 ~~~~~~~~~~~~~y~~l~~~~~~~~-~~Ida~~~~e~V~~~I~~~i~~~ 207 (213)
T PRK13973 160 KEDLAFHEKRREAFLQIAAQEPERC-VVIDATASPEAVAAEIWAAVDQR 207 (213)
T ss_pred hchHHHHHHHHHHHHHHHHhCCCcE-EEEcCCCCHHHHHHHHHHHHHHH
Confidence 111222222211100111111 334433 7999999999998753
No 78
>PRK06761 hypothetical protein; Provisional
Probab=96.71 E-value=0.014 Score=52.31 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=31.9
Q ss_pred ccEEEEccCCCCCC-----------------CcccC--CCCCCCCCCcceEEecCHHHHHHhhhCCcE
Q psy10228 51 EPFMLCYTQDDPTT-----------------EDTTR--ARREYEVDGRDYHFVSSREQMEKDIQNHLF 99 (225)
Q Consensus 51 ~~ivl~GpsgsGK~-----------------s~TTR--p~R~~E~dG~dY~FV~s~eef~~~i~~~~F 99 (225)
.+|+|+||+||||| .+++. ++++.|..|..| | +.++|...++....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~-~--~~eer~~~l~~~~~ 68 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVAC-F--TKEEFDRLLSNYPD 68 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccC-C--CHHHHHHHHHhhhH
Confidence 57999999999999 12322 346677877554 3 67888777755544
No 79
>PRK14528 adenylate kinase; Provisional
Probab=96.71 E-value=0.0036 Score=52.19 Aligned_cols=150 Identities=13% Similarity=0.100 Sum_probs=73.4
Q ss_pred cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCC--------cEEEEEEeCCcceeecHHHHHHHHHc
Q psy10228 52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNH--------LFIEAGQYNDNLYGTSVASVRDVAEK 123 (225)
Q Consensus 52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~--------~FiE~~~~~gn~YGTs~~sV~~v~~~ 123 (225)
-|+|+||+||||++...+-. +.-|..+.. .-+-+...++.+ .|++.|...... +....+.+.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la---~~~~~~~is--~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~--~~~~~~~~~l~~ 75 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILC---ERLSIPQIS--TGDILREAVKNQTAMGIEAKRYMDAGDLVPDS--VVIGIIKDRIRE 75 (186)
T ss_pred EEEEECCCCCCHHHHHHHHH---HHhCCCeee--CCHHHHHHhhcCCHHHHHHHHHHhCCCccCHH--HHHHHHHHHHhC
Confidence 48999999999983332221 122332222 334444444333 122222111100 112233443333
Q ss_pred ---CCeEEEEccHHH---HHHHHh----hccCC-eEEEEecCCHHHHHHHhccC--------CHHHHHHHHHHHHHHHH-
Q psy10228 124 ---GKHCILDVSGNA---IKRLQV----ASLYP-VAIFIKPKSVESIMEMNKRM--------TEEQAKKMYDRSMKMEQ- 183 (225)
Q Consensus 124 ---gk~~ildv~~~g---vk~L~~----~~~~P-i~IFI~pps~~~L~~L~~R~--------seeei~~rl~~a~k~E~- 183 (225)
..-.|+|--|.. +..|.. .+..| .+|++.+|.-..+.++..|. +++.+++|++...+.-.
T Consensus 76 ~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~p 155 (186)
T PRK14528 76 ADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLP 155 (186)
T ss_pred cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHH
Confidence 233577754422 222221 12234 68889988655555676652 46789999988753211
Q ss_pred ---hhCC-CCcEEEEC-CCHHHHHHHHHHH
Q psy10228 184 ---EFGE-FFTAVVQG-DMPEDIYQKVKEV 208 (225)
Q Consensus 184 ---~~~~-~fd~vI~N-ddleea~~~lk~i 208 (225)
.|.. ..-+.|.. .+.++.+..|...
T Consensus 156 v~~~y~~~~~~~~i~~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 156 LLDFYAAQKKLSQVNGVGSLEEVTSLIQKE 185 (186)
T ss_pred HHHHHHhCCCEEEEECCCCHHHHHHHHHHh
Confidence 2221 12233443 3788888887653
No 80
>KOG3812|consensus
Probab=96.70 E-value=0.0078 Score=55.15 Aligned_cols=89 Identities=20% Similarity=0.249 Sum_probs=64.7
Q ss_pred CeEEEEccH-HHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCCH--HHHHHHHHHHHHHHHhhCCCCcEEEECCCHHH
Q psy10228 125 KHCILDVSG-NAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMTE--EQAKKMYDRSMKMEQEFGEFFTAVVQGDMPED 200 (225)
Q Consensus 125 k~~ildv~~-~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~se--eei~~rl~~a~k~E~~~~~~fd~vI~Nddlee 200 (225)
..++||.+. +-=..|.+..+.||++||+..|.++|.+ ++.|++. ..+...+-.+.+++|--.+.||.||.-+-+++
T Consensus 263 qLvvlDadtInhPaql~ktsLaPI~v~ikvSspKvLqrLirsrGksq~K~lnvq~va~~klaQc~~e~FdvildENqLed 342 (475)
T KOG3812|consen 263 QLVVLDADTINHPAQLAKTSLAPIIVYIKVSSPKVLQRLIRSRGKSQSKHLNVQMVAADKLAQCPPEGFDVILDENQLED 342 (475)
T ss_pred eEEEecCCcCCCHHHhccCCCcceEEEEEeCCHHHHHHHHHhcCchhhhhchHhhhhcchhhhCChhhhheeeccccHHH
Confidence 356677542 2122466667899999999999999999 7778742 22333334455677766789999999888999
Q ss_pred HHHHHHHHHHhcc
Q psy10228 201 IYQKVKEVIQEQS 213 (225)
Q Consensus 201 a~~~lk~iI~~~~ 213 (225)
|++.|.+.++...
T Consensus 343 Acehla~yLEaYw 355 (475)
T KOG3812|consen 343 ACEHLAEYLEAYW 355 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
No 81
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.66 E-value=0.019 Score=47.80 Aligned_cols=87 Identities=14% Similarity=0.213 Sum_probs=47.3
Q ss_pred CCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC--CHHH-HHHHHHHHHHHH-Hh----h------CCCC
Q psy10228 124 GKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM--TEEQ-AKKMYDRSMKME-QE----F------GEFF 189 (225)
Q Consensus 124 gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~--seee-i~~rl~~a~k~E-~~----~------~~~f 189 (225)
...||++--..|. +-. ....+.||+.+|-.-..++..+|- +-++ .++...|- +.| +. | ...|
T Consensus 73 ~~nvVlegrLA~W--i~k-~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE-~se~kRY~~~YgIDidDlSiy 148 (179)
T COG1102 73 EGNVVLEGRLAGW--IVR-EYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVERE-ESEKKRYKKIYGIDIDDLSIY 148 (179)
T ss_pred cCCeEEhhhhHHH--Hhc-cccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHHhCCCCccceee
Confidence 4567777555553 211 223378999998545455555553 3222 22222222 111 11 2 2467
Q ss_pred cEEEECC--CHHHHHHHHHHHHHhccC
Q psy10228 190 TAVVQGD--MPEDIYQKVKEVIQEQSG 214 (225)
Q Consensus 190 d~vI~Nd--dleea~~~lk~iI~~~~~ 214 (225)
|.||.-. +.++.+.-|...|...+.
T Consensus 149 DLVinTs~~~~~~v~~il~~aid~~~~ 175 (179)
T COG1102 149 DLVINTSKWDPEEVFLILLDAIDALSI 175 (179)
T ss_pred EEEEecccCCHHHHHHHHHHHHHhhcc
Confidence 8877644 688888888888776554
No 82
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.62 E-value=0.036 Score=44.82 Aligned_cols=64 Identities=8% Similarity=0.197 Sum_probs=36.9
Q ss_pred CCeEEEEecCCHHHHHHHhccC----------C--HHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228 145 YPVAIFIKPKSVESIMEMNKRM----------T--EEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 145 ~Pi~IFI~pps~~~L~~L~~R~----------s--eeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~ 211 (225)
..++|||..|....++++..|. . .+++.+.+.+- ...|....+++|.++ +.++.++++..++.+
T Consensus 94 ~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r---~~~y~~~a~~~Id~~~~~e~v~~~i~~~l~~ 170 (171)
T PRK03731 94 NGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAER---EALYREVAHHIIDATQPPSQVVSEILSALAQ 170 (171)
T ss_pred CCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHH---HHHHHHhCCEEEcCCCCHHHHHHHHHHHHhc
Confidence 4478999886544445565441 1 23333333321 123334456777655 689999999888753
No 83
>PLN02165 adenylate isopentenyltransferase
Probab=96.58 E-value=0.0062 Score=55.82 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=46.5
Q ss_pred CCccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEE
Q psy10228 49 DQEPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEA 102 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~ 102 (225)
.+.+|+|+||+||||| ..+|-+|-..|..|..||.+ +. -+.+.
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli-~~----------~~~~~ 110 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLL-GE----------LNPDD 110 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhh-he----------ecccc
Confidence 3568999999999999 44555665667778777766 20 11222
Q ss_pred EEeC-CcceeecHHHHHHHHHcCCeEEEE
Q psy10228 103 GQYN-DNLYGTSVASVRDVAEKGKHCILD 130 (225)
Q Consensus 103 ~~~~-gn~YGTs~~sV~~v~~~gk~~ild 130 (225)
+.|+ +.+.--....|.++.++|+.+|+.
T Consensus 111 ~~~sv~~F~~~a~~~I~~i~~~~~~PI~v 139 (334)
T PLN02165 111 GELTASEFRSLASLSISEITSRQKLPIVA 139 (334)
T ss_pred ceeeHHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 2232 344445567788888899987764
No 84
>PRK13949 shikimate kinase; Provisional
Probab=96.57 E-value=0.041 Score=45.26 Aligned_cols=13 Identities=15% Similarity=-0.008 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|||||
T Consensus 3 ~I~liG~~GsGKs 15 (169)
T PRK13949 3 RIFLVGYMGAGKT 15 (169)
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 85
>KOG3209|consensus
Probab=96.53 E-value=0.00085 Score=66.17 Aligned_cols=48 Identities=33% Similarity=0.345 Sum_probs=46.1
Q ss_pred CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHH
Q psy10228 65 EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVA 115 (225)
Q Consensus 65 s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~ 115 (225)
++|||+++++|++ ||.|. +...|...-..|-|+|.+.|.+|||||++.
T Consensus 68 ~~~~~~~~~~~~~--d~~fs-~~~~~l~l~~~~~~l~~~~~~~~~ygtPkP 115 (984)
T KOG3209|consen 68 PCTTRRILEGEVP--DYSFS-TVPIFLCLEVSGCLLEFGTYESNYYGTPKP 115 (984)
T ss_pred ccccccccccccC--ccccc-cchhhheeeecceeecccCcccCCCCCCCC
Confidence 9999999999999 99999 899999999999999999999999999976
No 86
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.45 E-value=0.058 Score=48.88 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=47.5
Q ss_pred HHHHHHcCCeEEEE---ccHHHHHHHHhhccCC--eEEEEecCCHHHHHH-HhccC------CHHHHHHHHHHHHH----
Q psy10228 117 VRDVAEKGKHCILD---VSGNAIKRLQVASLYP--VAIFIKPKSVESIME-MNKRM------TEEQAKKMYDRSMK---- 180 (225)
Q Consensus 117 V~~v~~~gk~~ild---v~~~gvk~L~~~~~~P--i~IFI~pps~~~L~~-L~~R~------seeei~~rl~~a~k---- 180 (225)
|..++++|...|++ +.|.-++... ..+| +.+.+...+.+.+++ +..|. .+.-+ +-++....
T Consensus 183 I~~~~~~g~s~IiEGvhl~P~~i~~~~--~~~~~~i~~~l~i~~ee~h~~RF~~R~~~~~r~~~~y~-~~~~~ir~iq~~ 259 (301)
T PRK04220 183 IERALKEGISVIIEGVHIVPGFIKEKY--LENPNVFMFVLTLSDEEAHKARFYARARVSRRPAERYL-KNFEIIREINDY 259 (301)
T ss_pred HHHHHHhCCcEEEecCCCCHHHHHHhh--hcCCCEEEEEEEECCHHHHHHHHHHHHhhhCCchhhHH-HHHHHHHHHHHH
Confidence 55566789988876 4554443321 2234 344455567666654 43332 11110 11121111
Q ss_pred -HHHhhCCCCcEEEECCCHHHHHHHHHHHHHhc
Q psy10228 181 -MEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 181 -~E~~~~~~fd~vI~Nddleea~~~lk~iI~~~ 212 (225)
+|+.-.+.+. +|.|.|++++++++.++|.+.
T Consensus 260 l~~~a~~~~ip-~I~n~~i~~s~~~~~~~i~~~ 291 (301)
T PRK04220 260 IVEKAKKHGVP-VIENISIEETVDKILEIITER 291 (301)
T ss_pred HHHHHHHhCCC-eecCccHHHHHHHHHHHHHHH
Confidence 1111123333 378899999999998887653
No 87
>PLN02674 adenylate kinase
Probab=96.44 E-value=0.0091 Score=52.45 Aligned_cols=42 Identities=12% Similarity=0.265 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCC-----cEEEEC-CCHHHHHHHHHHHH
Q psy10228 168 EEQAKKMYDRSMKMEQEFGEFF-----TAVVQG-DMPEDIYQKVKEVI 209 (225)
Q Consensus 168 eeei~~rl~~a~k~E~~~~~~f-----d~vI~N-ddleea~~~lk~iI 209 (225)
++.+++||+...+.-.....+| -+.|.. .++++.++.|..++
T Consensus 196 ~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 196 AAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 6788999988753211111222 233443 37999999998876
No 88
>PLN02348 phosphoribulokinase
Probab=96.43 E-value=0.012 Score=55.10 Aligned_cols=37 Identities=14% Similarity=-0.138 Sum_probs=23.3
Q ss_pred ceeecccccccccCCCCCCCCCCccEEEEccCCCCCC
Q psy10228 28 FSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~ 64 (225)
.+++.+-|+-...-......+...+|-|.|+||||||
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~p~IIGIaG~SGSGKS 63 (395)
T PLN02348 27 GSRRSKSPAASSVVVALAADDGTVVIGLAADSGCGKS 63 (395)
T ss_pred ccccccCchhHHHHHhhccCCCCEEEEEECCCCCCHH
Confidence 3455566655444433333344456679999999999
No 89
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.43 E-value=0.00075 Score=60.00 Aligned_cols=145 Identities=19% Similarity=0.253 Sum_probs=67.2
Q ss_pred cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEc
Q psy10228 52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDV 131 (225)
Q Consensus 52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv 131 (225)
+|||+|.+|||||+...+-...-+..|.+.+.| +.+.+. +..+.|. -.......-|.-+++|+..+.++.++|+|
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i-~~~~~~--~~~~~y~-~~~~Ek~~R~~l~s~v~r~ls~~~iVI~D- 77 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVII-SDDSLG--IDRNDYA-DSKKEKEARGSLKSAVERALSKDTIVILD- 77 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE--THHHH---TTSSS---GGGHHHHHHHHHHHHHHHHTT-SEEEE--
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEE-cccccc--cchhhhh-chhhhHHHHHHHHHHHHHhhccCeEEEEe-
Confidence 689999999999911111110001155667778 655555 4444422 11111234477788889999889888888
Q ss_pred cHHHHHHHHhh-----c--cCC-eEEEEecCCHHHHHHH-hcc-----CCHHHHHHHHHHHHHHHH-h---hCCCCcEEE
Q psy10228 132 SGNAIKRLQVA-----S--LYP-VAIFIKPKSVESIMEM-NKR-----MTEEQAKKMYDRSMKMEQ-E---FGEFFTAVV 193 (225)
Q Consensus 132 ~~~gvk~L~~~-----~--~~P-i~IFI~pps~~~L~~L-~~R-----~seeei~~rl~~a~k~E~-~---~~~~fd~vI 193 (225)
+.+-++-+++. . ..+ .+||+..|- +...+. ..| .+++-+.++..|- |. . -++...++|
T Consensus 78 d~nYiKg~RYelyclAr~~~~~~c~i~~~~~~-e~~~~~N~~R~~~~~~~~e~i~~m~~Rf---E~P~~~nrWD~plf~i 153 (270)
T PF08433_consen 78 DNNYIKGMRYELYCLARAYGTTFCVIYCDCPL-ETCLQRNSKRPEPERYPEETIDDMIQRF---EEPDPKNRWDSPLFTI 153 (270)
T ss_dssp S---SHHHHHHHHHHHHHTT-EEEEEEEE--H-HHHHHHHHHTT-S--S-HHHHHHHHHH------TTSS-GGGS-SEEE
T ss_pred CCchHHHHHHHHHHHHHHcCCCEEEEEECCCH-HHHHHhhhccCCCCCCCHHHHHHHHHHh---cCCCCCCCccCCeEEE
Confidence 55445445431 1 122 679999874 444432 122 3466666665554 32 1 123445666
Q ss_pred ECCC----HHHHHHHH
Q psy10228 194 QGDM----PEDIYQKV 205 (225)
Q Consensus 194 ~Ndd----leea~~~l 205 (225)
.+++ +++.++.|
T Consensus 154 ~~~~~~~~~~~I~~~l 169 (270)
T PF08433_consen 154 DSSDEELPLEEIWNAL 169 (270)
T ss_dssp E-TTS---HHHHHHHH
T ss_pred ecCCCCCCHHHHHHHH
Confidence 7433 44555444
No 90
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.40 E-value=0.014 Score=46.02 Aligned_cols=49 Identities=10% Similarity=0.333 Sum_probs=29.4
Q ss_pred CCeEEEEecCCHHHHH-HHhccC-----CH---HHHHHHHHHHHHHHHhhCCCCcEEEECCC
Q psy10228 145 YPVAIFIKPKSVESIM-EMNKRM-----TE---EQAKKMYDRSMKMEQEFGEFFTAVVQGDM 197 (225)
Q Consensus 145 ~Pi~IFI~pps~~~L~-~L~~R~-----se---eei~~rl~~a~k~E~~~~~~fd~vI~Ndd 197 (225)
.-++|||..| .+.+. ++..|. +. +.+..++.+- ...|...+|++|..++
T Consensus 92 ~~~~i~l~~~-~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r---~~~Y~~~ad~~i~~~~ 149 (154)
T cd00464 92 NGIVVWLDAS-PEELLERLARDKTRPLLQDEDPERLRELLEER---EPLYREVADLTIDTDE 149 (154)
T ss_pred CCeEEEEeCC-HHHHHHHhccCCCCCCCCCCCHHHHHHHHHHH---HHHHHHhCcEEEECCC
Confidence 3478999987 45554 466553 21 2344444432 3456667999987664
No 91
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.39 E-value=0.0048 Score=50.96 Aligned_cols=53 Identities=21% Similarity=0.173 Sum_probs=37.9
Q ss_pred cCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECCC
Q psy10228 144 LYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDM 197 (225)
Q Consensus 144 ~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Ndd 197 (225)
..-.+|||.+|....++++..| .+.+++.+|+..... ........|+||.|+.
T Consensus 121 ~~D~vv~V~a~~~~ri~Rl~~Rd~~s~~~~~~r~~~Q~~-~~~~~~~aD~vI~N~~ 175 (179)
T cd02022 121 LVDRVIVVDAPPEIQIERLMKRDGLSEEEAEARIASQMP-LEEKRARADFVIDNSG 175 (179)
T ss_pred hCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhcCC-HHHHHHhCCEEEECcC
Confidence 3457899999876777776555 378888888887532 2234568999999983
No 92
>PRK02496 adk adenylate kinase; Provisional
Probab=96.37 E-value=0.0094 Score=49.02 Aligned_cols=65 Identities=11% Similarity=0.109 Sum_probs=38.5
Q ss_pred CC-eEEEEecCCHHHHHHHhccC----CHHHHHHHHHHHHHHHH----hhCCCCc-EEEECC-CHHHHHHHHHHHH
Q psy10228 145 YP-VAIFIKPKSVESIMEMNKRM----TEEQAKKMYDRSMKMEQ----EFGEFFT-AVVQGD-MPEDIYQKVKEVI 209 (225)
Q Consensus 145 ~P-i~IFI~pps~~~L~~L~~R~----seeei~~rl~~a~k~E~----~~~~~fd-~vI~Nd-dleea~~~lk~iI 209 (225)
.| .+|++.+|....+.++..|. +++.+++|++...+... .|...-- ..|..+ ++++...+|...|
T Consensus 107 ~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l 182 (184)
T PRK02496 107 SGERVVNLDVPDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAAL 182 (184)
T ss_pred CCCEEEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 45 67888887544444577665 35677788877643111 2221112 334433 7999999998876
No 93
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=96.31 E-value=0.011 Score=50.70 Aligned_cols=153 Identities=14% Similarity=0.162 Sum_probs=81.1
Q ss_pred CccEEEEccCCCCCC----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCc--EE---EEEEeCCc
Q psy10228 50 QEPFMLCYTQDDPTT----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHL--FI---EAGQYNDN 108 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~--Fi---E~~~~~gn 108 (225)
+.+|+|=|.-||||| ..+||-|....+ -+...+.+.++. +- |.--|...
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~i----------ge~iR~~ll~~~~~~~~~~e~lLfaad 72 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPI----------GEKIRELLLNGEEKLSPKAEALLFAAD 72 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChH----------HHHHHHHHcCCccCCCHHHHHHHHHHH
Confidence 468999999999999 578998854111 112222222221 10 00001222
Q ss_pred ceeecHHHHHHHHHcCCeEEEEc---c------------HHHHHHHHhh---ccCC-eEEEEecCCHHHHHHHhccCCH-
Q psy10228 109 LYGTSVASVRDVAEKGKHCILDV---S------------GNAIKRLQVA---SLYP-VAIFIKPKSVESIMEMNKRMTE- 168 (225)
Q Consensus 109 ~YGTs~~sV~~v~~~gk~~ildv---~------------~~gvk~L~~~---~~~P-i~IFI~pps~~~L~~L~~R~se- 168 (225)
.+..-..-|...+++|++||.|- + ...+..++.. .+.| ++||+..|-...++++.+|...
T Consensus 73 R~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~ 152 (208)
T COG0125 73 RAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELR 152 (208)
T ss_pred HHHHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCcc
Confidence 33334445666778899999884 1 1222223221 2356 7899998766777777766421
Q ss_pred ----HHHHHHHHHHHHHHHhhCCCCc--E-EEECC-CHHHHHHHHHHHHHhc
Q psy10228 169 ----EQAKKMYDRSMKMEQEFGEFFT--A-VVQGD-MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 169 ----eei~~rl~~a~k~E~~~~~~fd--~-vI~Nd-dleea~~~lk~iI~~~ 212 (225)
.+...-+++..+.-+++...+- . +|.++ ++++..+.+..+|...
T Consensus 153 ~r~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~ 204 (208)
T COG0125 153 DRFEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKER 204 (208)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHh
Confidence 1111112222221223333333 3 34433 6999999888888754
No 94
>COG4639 Predicted kinase [General function prediction only]
Probab=96.27 E-value=0.048 Score=45.14 Aligned_cols=139 Identities=16% Similarity=0.112 Sum_probs=73.9
Q ss_pred ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCC-cceeecHHHHHHHHHcCCeEEE
Q psy10228 51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYND-NLYGTSVASVRDVAEKGKHCIL 129 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~g-n~YGTs~~sV~~v~~~gk~~il 129 (225)
..++|+|+|||||+++-++---+ -+-+ +-+.|...+-...-.|-.+-+. .-.-......+..+++|++.|+
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~~~-------~~~l-sld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tii 74 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENFLQ-------NYVL-SLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTII 74 (168)
T ss_pred eEEEEecCCCCchhHHHHHhCCC-------ccee-cHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 36899999999999777663222 2334 7788887653222111111100 1223344556777889999999
Q ss_pred EccH---HHHHHHH---h-hccCCeEEEEecCCHHHHHH--HhccC-CHHHHHHHHHHHHHHHHhhCCCCcEEEECCCHH
Q psy10228 130 DVSG---NAIKRLQ---V-ASLYPVAIFIKPKSVESIME--MNKRM-TEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPE 199 (225)
Q Consensus 130 dv~~---~gvk~L~---~-~~~~Pi~IFI~pps~~~L~~--L~~R~-seeei~~rl~~a~k~E~~~~~~fd~vI~Nddle 199 (225)
|..- .-.+.+. + .+..+++|.+..|-..-+.+ ++.|- .++-|.+++.... ...-.+.|-++..+...+
T Consensus 75 dAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~Rqv~~~VI~r~~r~~~--~~l~~e~~~~~~~~~s~e 152 (168)
T COG4639 75 DATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRERQVPEEVIPRMLRETI--DLLEKEPFRYVWTLSSPE 152 (168)
T ss_pred EcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccchhCCHHHHHHHHHHHH--hhccCCCeEEEEecCCHH
Confidence 9643 3333332 2 13445666666553232333 33333 3455554444422 223345666666666554
No 95
>PRK14526 adenylate kinase; Provisional
Probab=96.25 E-value=0.039 Score=47.23 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHHHH----hhCCC-CcEEEE-CCCHHHHHHHHHHHHHh
Q psy10228 167 TEEQAKKMYDRSMKMEQ----EFGEF-FTAVVQ-GDMPEDIYQKVKEVIQE 211 (225)
Q Consensus 167 seeei~~rl~~a~k~E~----~~~~~-fd~vI~-Nddleea~~~lk~iI~~ 211 (225)
+++.+++||....+.-. .|... .-..|. +.++++.+++|..+|..
T Consensus 159 ~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 159 KEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 36788999988753111 22221 123333 33799999999998864
No 96
>KOG3079|consensus
Probab=96.20 E-value=0.033 Score=47.13 Aligned_cols=144 Identities=15% Similarity=0.193 Sum_probs=77.5
Q ss_pred ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCe----
Q psy10228 51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH---- 126 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~---- 126 (225)
.+|.+.|.+||||. |-+.|--|.-| |-.+ |.-+..+...+.. |.-||-. |++++++|++
T Consensus 9 ~IifVlGGPGsgKg---TqC~kiv~ky~--ftHl-SaGdLLR~E~~~~--------gse~g~~---I~~~i~~G~iVP~e 71 (195)
T KOG3079|consen 9 PIIFVLGGPGSGKG---TQCEKIVEKYG--FTHL-SAGDLLRAEIASA--------GSERGAL---IKEIIKNGDLVPVE 71 (195)
T ss_pred CEEEEEcCCCCCcc---hHHHHHHHHcC--ceee-cHHHHHHHHHccc--------cChHHHH---HHHHHHcCCcCcHH
Confidence 47789999999998 22222223333 3344 4444433332221 2233322 3333333433
Q ss_pred ------------------EEEEccHHHHHHHHh--hcc--CC-eEEEEecCCHHHHHHHhccC--------CHHHHHHHH
Q psy10228 127 ------------------CILDVSGNAIKRLQV--ASL--YP-VAIFIKPKSVESIMEMNKRM--------TEEQAKKMY 175 (225)
Q Consensus 127 ------------------~ildv~~~gvk~L~~--~~~--~P-i~IFI~pps~~~L~~L~~R~--------seeei~~rl 175 (225)
-|+|--|.-.+++.. +.+ -| .++|+.++--.-|+++..|+ +.+.+++|+
T Consensus 72 i~~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~ 151 (195)
T KOG3079|consen 72 ITLSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRL 151 (195)
T ss_pred HHHHHHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHH
Confidence 455554444444332 112 23 78999998755566666554 257889999
Q ss_pred HHHHHHH---HhhCCCCcE--EEE-CCCHHHHHHHHHHHHHh
Q psy10228 176 DRSMKME---QEFGEFFTA--VVQ-GDMPEDIYQKVKEVIQE 211 (225)
Q Consensus 176 ~~a~k~E---~~~~~~fd~--vI~-Nddleea~~~lk~iI~~ 211 (225)
+...+.- ++|-+.-+. .|. +.+.++.+.++..+|..
T Consensus 152 et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 152 ETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred HHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 8875321 122221112 232 34799999999988864
No 97
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=96.19 E-value=0.037 Score=46.80 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=50.8
Q ss_pred CCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhccC
Q psy10228 145 YPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQSG 214 (225)
Q Consensus 145 ~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~~~ 214 (225)
...+|||.+|.-..++++..| .+++++..|+.+-...+ ......|++|.|+ ++++.+.++..++.....
T Consensus 126 ~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~~~ri~~Q~~~~-~k~~~ad~vI~N~g~~e~l~~~v~~~~~~~~~ 197 (200)
T PRK14734 126 MDLVVVVDVDVEERVRRLVEKRGLDEDDARRRIAAQIPDD-VRLKAADIVVDNNGTREQLLAQVDGLIAEILS 197 (200)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhcCCHH-HHHHhCCEEEECcCCHHHHHHHHHHHHHHHHh
Confidence 457899999876667676554 37889988888653222 1235778999998 799999999998876644
No 98
>PRK13974 thymidylate kinase; Provisional
Probab=96.16 E-value=0.16 Score=43.09 Aligned_cols=95 Identities=24% Similarity=0.287 Sum_probs=48.8
Q ss_pred HHHHHHcCCeEEEEcc---------------HHHHHHHHh---hccCC-eEEEEecCCHHHHHHHhccCCH---HHHHHH
Q psy10228 117 VRDVAEKGKHCILDVS---------------GNAIKRLQV---ASLYP-VAIFIKPKSVESIMEMNKRMTE---EQAKKM 174 (225)
Q Consensus 117 V~~v~~~gk~~ildv~---------------~~gvk~L~~---~~~~P-i~IFI~pps~~~L~~L~~R~se---eei~~r 174 (225)
|+..+++|+++|.|=- .+-+..+.. ..+.| .+||+..|.-..++++..|..+ +....-
T Consensus 88 i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~dD~~e~~~~~y 167 (212)
T PRK13974 88 IRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKPDRIEAEGIEF 167 (212)
T ss_pred HHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcccCchhhhhHHH
Confidence 5666778988886521 111333332 13356 7788888754444557666532 111111
Q ss_pred HHHHHHHHHhhCCCCcE-EEECC-CHHHHHHHHHHHHHh
Q psy10228 175 YDRSMKMEQEFGEFFTA-VVQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 175 l~~a~k~E~~~~~~fd~-vI~Nd-dleea~~~lk~iI~~ 211 (225)
+.+....-..+....-. +|..+ ++++..+++..+|..
T Consensus 168 ~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~ 206 (212)
T PRK13974 168 LERVAEGFALIAEERNWKVISADQSIETISNEIKETLLN 206 (212)
T ss_pred HHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 11221111223222223 34433 799999999999974
No 99
>PRK13976 thymidylate kinase; Provisional
Probab=96.16 E-value=0.039 Score=47.16 Aligned_cols=95 Identities=14% Similarity=0.127 Sum_probs=49.5
Q ss_pred HHHHHHcCCeEEEEcc---------------HHHHHHHHh--hccCC-eEEEEecCCHHHHHHHhccCCH---HHHHHHH
Q psy10228 117 VRDVAEKGKHCILDVS---------------GNAIKRLQV--ASLYP-VAIFIKPKSVESIMEMNKRMTE---EQAKKMY 175 (225)
Q Consensus 117 V~~v~~~gk~~ildv~---------------~~gvk~L~~--~~~~P-i~IFI~pps~~~L~~L~~R~se---eei~~rl 175 (225)
|...+++|+++|.|=- .+-+..|.. ....| ++||+..|--..+++++++.-+ .+..+++
T Consensus 79 I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~e~~~~~~l~~v 158 (209)
T PRK13976 79 ILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGYEFMDLEFYDKV 158 (209)
T ss_pred HHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccchhcccHHHHHHH
Confidence 5556678999998731 111233332 12346 7889987643444445544322 2333444
Q ss_pred HHHHH-HHHhhCCCCcEEEEC----CC---HHHHHHHHHHHHHhc
Q psy10228 176 DRSMK-MEQEFGEFFTAVVQG----DM---PEDIYQKVKEVIQEQ 212 (225)
Q Consensus 176 ~~a~k-~E~~~~~~fd~vI~N----dd---leea~~~lk~iI~~~ 212 (225)
..+.. +-..+.+.+ .+|.+ .+ +++..+++.++|...
T Consensus 159 ~~~Y~~l~~~~~~~~-~~id~~~~~~~~~~~e~v~~~i~~~i~~~ 202 (209)
T PRK13976 159 RKGFREIVIKNPHRC-HVITCIDAKDNIEDINSVHLEIVKLLHAV 202 (209)
T ss_pred HHHHHHHHHhCCCCe-EEEECCCCccCcCCHHHHHHHHHHHHHHH
Confidence 44421 111122222 23343 24 899999999988754
No 100
>KOG3354|consensus
Probab=96.14 E-value=0.031 Score=46.47 Aligned_cols=147 Identities=18% Similarity=0.229 Sum_probs=79.5
Q ss_pred CccEEEEccCCCCCC------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHc
Q psy10228 50 QEPFMLCYTQDDPTT------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEK 123 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~ 123 (225)
+-.|+++|+|||||+ ++.-+- .=.||-|||=-.+++.|.+-|.-++==-| +++--+... .+..+..
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~---~F~dgDd~Hp~~NveKM~~GipLnD~DR~----pWL~~i~~~-~~~~l~~ 83 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGL---KFIDGDDLHPPANVEKMTQGIPLNDDDRW----PWLKKIAVE-LRKALAS 83 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCC---cccccccCCCHHHHHHHhcCCCCCccccc----HHHHHHHHH-HHHHhhc
Confidence 458999999999999 333332 23688888865466666665543332111 122222222 2333447
Q ss_pred CCeEEEEccHHHHHH----H-Hhh------ccCC----eEEEEecCCHHHHHH-HhccCC----HHHHHHHHHHHHHHHH
Q psy10228 124 GKHCILDVSGNAIKR----L-QVA------SLYP----VAIFIKPKSVESIME-MNKRMT----EEQAKKMYDRSMKMEQ 183 (225)
Q Consensus 124 gk~~ildv~~~gvk~----L-~~~------~~~P----i~IFI~pps~~~L~~-L~~R~s----eeei~~rl~~a~k~E~ 183 (225)
|+-+||-++. +++ + +.+ .-+| .+||+.. |.++|.. +.+|-. .+-++..++. +|.
T Consensus 84 ~q~vVlACSa--LKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~Rl~~R~gHFMp~~lleSQf~~---LE~ 157 (191)
T KOG3354|consen 84 GQGVVLACSA--LKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKRLKKRKGHFMPADLLESQFAT---LEA 157 (191)
T ss_pred CCeEEEEhHH--HHHHHHHHHHhhcccCCccCCccceEEEeeeec-cHHHHHHHHhhcccccCCHHHHHHHHHh---ccC
Confidence 8888888764 221 1 110 1344 4677777 7787765 777753 2222222222 222
Q ss_pred hhCC---CCcEEEECCCHHHHHHHHHHHHH
Q psy10228 184 EFGE---FFTAVVQGDMPEDIYQKVKEVIQ 210 (225)
Q Consensus 184 ~~~~---~fd~vI~Nddleea~~~lk~iI~ 210 (225)
.-.+ .+..-+.|-+.|+.++.|...+.
T Consensus 158 p~~~e~div~isv~~~~~e~iv~tI~k~~~ 187 (191)
T KOG3354|consen 158 PDADEEDIVTISVKTYSVEEIVDTIVKMVA 187 (191)
T ss_pred CCCCccceEEEeeccCCHHHHHHHHHHHHH
Confidence 1112 23333445688888888776653
No 101
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.10 E-value=0.0083 Score=54.45 Aligned_cols=67 Identities=18% Similarity=0.262 Sum_probs=47.7
Q ss_pred ccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE
Q psy10228 51 EPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ 104 (225)
Q Consensus 51 ~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~ 104 (225)
..|+|+||+||||| ..-|-+|-..|..|+.||.+ + +++.++
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhli-D------------i~~p~e 70 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLI-D------------IRDPTE 70 (308)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEe-c------------ccCccc
Confidence 47999999999999 33444455569999999987 2 333222
Q ss_pred -eC-CcceeecHHHHHHHHHcCCeEEEE
Q psy10228 105 -YN-DNLYGTSVASVRDVAEKGKHCILD 130 (225)
Q Consensus 105 -~~-gn~YGTs~~sV~~v~~~gk~~ild 130 (225)
|+ +.++--....|.++..+||..|+.
T Consensus 71 ~ysa~~f~~~a~~~i~~i~~rgk~pIlV 98 (308)
T COG0324 71 SYSAAEFQRDALAAIDDILARGKLPILV 98 (308)
T ss_pred cccHHHHHHHHHHHHHHHHhCCCCcEEE
Confidence 22 244455778899999999988775
No 102
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.09 E-value=0.15 Score=42.70 Aligned_cols=148 Identities=11% Similarity=0.217 Sum_probs=77.9
Q ss_pred ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcce--eecHHHHHHHHHcCCeEE
Q psy10228 51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY--GTSVASVRDVAEKGKHCI 128 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~Y--GTs~~sV~~v~~~gk~~i 128 (225)
..|+|+|+-|+|||+.--+-. .--+|.|+++.+.+++... -.--+.-...|.-| -.=...|+++...+ .+|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LA-----k~L~~~F~D~D~~Ie~~~g-~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~-~~V 75 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALA-----KALNLPFIDTDQEIEKRTG-MSIAEIFEEEGEEGFRRLETEVLKELLEED-NAV 75 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHH-----HHcCCCcccchHHHHHHHC-cCHHHHHHHHhHHHHHHHHHHHHHHHhhcC-CeE
Confidence 469999999999992211100 0126778866666665421 00000000111111 11223355556655 455
Q ss_pred EEccH------HHHHHHHhhccCCeEEEEecCCHHHHHH-Hhc---cC-----CH-HHHHHHHHHHHHHHHhhCCCCcEE
Q psy10228 129 LDVSG------NAIKRLQVASLYPVAIFIKPKSVESIME-MNK---RM-----TE-EQAKKMYDRSMKMEQEFGEFFTAV 192 (225)
Q Consensus 129 ldv~~------~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~---R~-----se-eei~~rl~~a~k~E~~~~~~fd~v 192 (225)
+-..+ +....|+. ..++||+..| ++.|.+ +.. |. +. +.+++.++.= ...|....|++
T Consensus 76 iaTGGG~v~~~enr~~l~~---~g~vv~L~~~-~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R---~~~Y~e~a~~~ 148 (172)
T COG0703 76 IATGGGAVLSEENRNLLKK---RGIVVYLDAP-FETLYERLQRDRKRPLLQTEDPREELEELLEER---QPLYREVADFI 148 (172)
T ss_pred EECCCccccCHHHHHHHHh---CCeEEEEeCC-HHHHHHHhccccCCCcccCCChHHHHHHHHHHH---HHHHHHhCcEE
Confidence 54333 33334432 3489999985 677765 652 21 12 2344433332 24566778888
Q ss_pred EECCC-HHHHHHHHHHHHHhc
Q psy10228 193 VQGDM-PEDIYQKVKEVIQEQ 212 (225)
Q Consensus 193 I~Ndd-leea~~~lk~iI~~~ 212 (225)
+..++ .++.++++...+...
T Consensus 149 ~~~~~~~~~v~~~i~~~l~~~ 169 (172)
T COG0703 149 IDTDDRSEEVVEEILEALEGS 169 (172)
T ss_pred ecCCCCcHHHHHHHHHHHHHh
Confidence 88664 378888888877653
No 103
>PRK12338 hypothetical protein; Provisional
Probab=96.05 E-value=0.033 Score=50.79 Aligned_cols=90 Identities=16% Similarity=0.136 Sum_probs=47.7
Q ss_pred HHcCCeEEEE---ccHHHHHHHHhhccCCeEEEEecCCHHHHH-HHhccC------C-----HHHHHHHHHHHHHHHHhh
Q psy10228 121 AEKGKHCILD---VSGNAIKRLQVASLYPVAIFIKPKSVESIM-EMNKRM------T-----EEQAKKMYDRSMKMEQEF 185 (225)
Q Consensus 121 ~~~gk~~ild---v~~~gvk~L~~~~~~Pi~IFI~pps~~~L~-~L~~R~------s-----eeei~~rl~~a~k~E~~~ 185 (225)
+..|..+|++ +.|.-+...+...-.++..|+.-++.+..+ ++..|. . -++|+.+.+.. .++
T Consensus 102 ~~~g~svIiEGvhl~P~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r~~~~l~~f~~Ir~Iq~~l--~~~-- 177 (319)
T PRK12338 102 VTDSDDIVIEGVHLVPGLIDIEQFEENASIHFFILSADEEVHKERFVKRAMEIKRGGKQLEYFRENRIIHDHL--VEQ-- 177 (319)
T ss_pred hcCCCeEEEEeccccHHHHhhhhhcccCceEEEEEECCHHHHHHHHHHhhhccCCchhhhhChHHHHHHHHHH--HHh--
Confidence 4467788876 344333322221212333333335655554 355432 1 23444332222 122
Q ss_pred CCCCcEE-EECCCHHHHHHHHHHHHHhccC
Q psy10228 186 GEFFTAV-VQGDMPEDIYQKVKEVIQEQSG 214 (225)
Q Consensus 186 ~~~fd~v-I~Nddleea~~~lk~iI~~~~~ 214 (225)
+..++.. |.|+|++++++++.++|...+.
T Consensus 178 A~e~~VpvI~N~did~Tv~~ile~I~e~s~ 207 (319)
T PRK12338 178 AREHNVPVIKNDDIDCTVKKMLSYIREVCV 207 (319)
T ss_pred HhhCCCceeCCCcHHHHHHHHHHHHHhheE
Confidence 3445554 6788999999999999987654
No 104
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.04 E-value=0.0077 Score=50.46 Aligned_cols=26 Identities=4% Similarity=0.164 Sum_probs=19.7
Q ss_pred CCCcEEEECC--CHHHHHHHHHHHHHhc
Q psy10228 187 EFFTAVVQGD--MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 187 ~~fd~vI~Nd--dleea~~~lk~iI~~~ 212 (225)
...|.+|.++ ++++++.+|.+.|...
T Consensus 166 ~~ad~~Idt~~~~~~~vv~~Il~~l~~~ 193 (198)
T PRK03846 166 ESPEIHLDTGEQLVTNLVEQLLDYLRQR 193 (198)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4467888754 6899999999888753
No 105
>PRK07933 thymidylate kinase; Validated
Probab=96.00 E-value=0.35 Score=41.26 Aligned_cols=13 Identities=0% Similarity=-0.181 Sum_probs=12.4
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
+|+|-|+-|||||
T Consensus 2 ~IviEG~dGsGKS 14 (213)
T PRK07933 2 LIAIEGVDGAGKR 14 (213)
T ss_pred EEEEEcCCCCCHH
Confidence 6999999999999
No 106
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.98 E-value=0.052 Score=42.16 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=21.0
Q ss_pred eEEEEecCCHHHHHHHhc-----c--CCHHHHHHHHHHHH
Q psy10228 147 VAIFIKPKSVESIMEMNK-----R--MTEEQAKKMYDRSM 179 (225)
Q Consensus 147 i~IFI~pps~~~L~~L~~-----R--~seeei~~rl~~a~ 179 (225)
.+|||..|-...++++.+ + .+++++.+++..-.
T Consensus 85 ~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d 124 (147)
T cd02020 85 LKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERD 124 (147)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 779998765444455433 2 37888877776654
No 107
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.94 E-value=0.0026 Score=52.45 Aligned_cols=144 Identities=9% Similarity=0.108 Sum_probs=66.8
Q ss_pred CccEEEEccCCCCCCC----cccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCC-c---ceeecHHHHHHHH
Q psy10228 50 QEPFMLCYTQDDPTTE----DTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYND-N---LYGTSVASVRDVA 121 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s----~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~g-n---~YGTs~~sV~~v~ 121 (225)
..+|+|+|+|||||++ ...+.+ ..|....++ +.+.+.+.+..+. .|.. . .|-.-....+..+
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~----~~~~~~~~l-~~d~~r~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 87 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLE----SKGYRVYVL-DGDNVRHGLNKDL-----GFSEEDRKENIRRIGEVAKLFV 87 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH----HcCCcEEEE-CChHHHhhhcccc-----CCCHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999981 111111 124444566 5555554332111 0100 0 0100012234466
Q ss_pred HcCCeEEEEccH---HHHHHHHh-hccCC-eEEEEecCCHHHHHHHhcc-C----CHHHHHHHHHHHHHHHHhhC--CCC
Q psy10228 122 EKGKHCILDVSG---NAIKRLQV-ASLYP-VAIFIKPKSVESIMEMNKR-M----TEEQAKKMYDRSMKMEQEFG--EFF 189 (225)
Q Consensus 122 ~~gk~~ildv~~---~gvk~L~~-~~~~P-i~IFI~pps~~~L~~L~~R-~----seeei~~rl~~a~k~E~~~~--~~f 189 (225)
.+|.+||+|..- .....++. ....| ++||+.+| .+.+.+-..+ + +.+++.... .....|. ...
T Consensus 88 ~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~-~e~~~~R~~~~l~~~~~~~~~~~l~----~~~~~y~~p~~a 162 (184)
T TIGR00455 88 RNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCP-LEVCEQRDPKGLYKKARNGEIKGFT----GIDSPYEAPENP 162 (184)
T ss_pred cCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCC-HHHHHHhCchhHHHHHhcCCccCcc----cccCCCCCCCCC
Confidence 779999998642 11111211 11123 56888876 4444321111 0 000110000 0112232 457
Q ss_pred cEEEECC--CHHHHHHHHHHH
Q psy10228 190 TAVVQGD--MPEDIYQKVKEV 208 (225)
Q Consensus 190 d~vI~Nd--dleea~~~lk~i 208 (225)
|++|.++ ++++++.++...
T Consensus 163 dl~Idt~~~~~~~~~~~i~~~ 183 (184)
T TIGR00455 163 EVVLDTDQNDREECVGQIIEK 183 (184)
T ss_pred cEEEECCCCCHHHHHHHHHHh
Confidence 7888765 688888887653
No 108
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.91 E-value=0.043 Score=45.98 Aligned_cols=154 Identities=14% Similarity=0.195 Sum_probs=83.9
Q ss_pred ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecH--------HHHHHHHH
Q psy10228 51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSV--------ASVRDVAE 122 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~--------~sV~~v~~ 122 (225)
..++++|-+|+|||+.+.=..+. . .+|+.| +--++.-.++....+ .+..+..-+.+. .+.+.+.+
T Consensus 5 kvvvitGVpGvGKTTVl~~~~~~--l--~~~~iv-NyG~~Mle~A~k~gl--ve~rD~~Rklp~e~Q~~lq~~Aa~rI~~ 77 (189)
T COG2019 5 KVVVITGVPGVGKTTVLKIALKE--L--VKHKIV-NYGDLMLEIAKKKGL--VEHRDEMRKLPLENQRELQAEAAKRIAE 77 (189)
T ss_pred eEEEEEcCCCCChHHHHHHHHHH--H--hhceee-eHhHHHHHHHHHhCC--cccHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999655544332 2 567777 444444333322221 122333444443 34455556
Q ss_pred cCCeEEEEc-----cHHH----HHHHHhhccCCeEEEEecCCHHHHHH--Hhc----cC--CHHHHHHHHHHHHHHHHhh
Q psy10228 123 KGKHCILDV-----SGNA----IKRLQVASLYPVAIFIKPKSVESIME--MNK----RM--TEEQAKKMYDRSMKMEQEF 185 (225)
Q Consensus 123 ~gk~~ildv-----~~~g----vk~L~~~~~~Pi~IFI~pps~~~L~~--L~~----R~--seeei~~rl~~a~k~E~~~ 185 (225)
.+..+|+|. +|.| +..--...+.|-+|+|.--+.+++.. ++. |. +.++|++.++.+.-.-..|
T Consensus 78 ~~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA~a~ 157 (189)
T COG2019 78 MALEIIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAAMAY 157 (189)
T ss_pred hhhceEEeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHH
Confidence 666456664 2222 22101125677666666556666542 432 11 4577776555443222333
Q ss_pred C---CCCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228 186 G---EFFTAVVQGD--MPEDIYQKVKEVIQE 211 (225)
Q Consensus 186 ~---~~fd~vI~Nd--dleea~~~lk~iI~~ 211 (225)
+ +--=.||.|. ++++|...+..+|..
T Consensus 158 A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~ 188 (189)
T COG2019 158 AILLGATVKIVENHEGDPEEAAEEIVELLDR 188 (189)
T ss_pred HHHhCCeEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 2 2333566776 799999999998864
No 109
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.91 E-value=0.015 Score=51.72 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=34.0
Q ss_pred ccCCeEEEEecCCHHH----HHH-HhccC-CHHHHHHHHHHHHHHHHhh----CCCCcEEEECC
Q psy10228 143 SLYPVAIFIKPKSVES----IME-MNKRM-TEEQAKKMYDRSMKMEQEF----GEFFTAVVQGD 196 (225)
Q Consensus 143 ~~~Pi~IFI~pps~~~----L~~-L~~R~-seeei~~rl~~a~k~E~~~----~~~fd~vI~Nd 196 (225)
.++...|||.++.... +++ +.+|+ +.+++.+++......+..| ....|+||.++
T Consensus 114 ~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~r~~~~~~~I~P~~~~ADvVI~~~ 177 (273)
T cd02026 114 ELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEARKPDFEAYIDPQKQYADVVIQVL 177 (273)
T ss_pred hhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHhhchhHHHHhccccccCcEEEEcc
Confidence 4567899999876444 223 44555 6788887776432222333 46788888654
No 110
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.84 E-value=0.0037 Score=52.42 Aligned_cols=101 Identities=7% Similarity=0.087 Sum_probs=47.4
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEE--------EEEeCCc-ceeecHHHHHHH
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIE--------AGQYNDN-LYGTSVASVRDV 120 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE--------~~~~~gn-~YGTs~~sV~~v 120 (225)
...++|.|++|||||+.-..-... ..+.++..+ +.++|...+.. |-+ +..+... ..-.....++.+
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~--~~~~~~v~i-~~D~~r~~~p~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a 89 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEE--FGGGGIVVI-DADEFRQFHPD--YDELLKADPDEASELTQKEASRLAEKLIEYA 89 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHH--T-TT-SEEE--GGGGGGGSTT--HHHHHHHHCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhh--ccCCCeEEE-ehHHHHHhccc--hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999322222111 115677888 78887765411 000 0000000 001234456777
Q ss_pred HHcCCeEEEEcc---HHHH----HHHHhhccCCeEEEEecCC
Q psy10228 121 AEKGKHCILDVS---GNAI----KRLQVASLYPVAIFIKPKS 155 (225)
Q Consensus 121 ~~~gk~~ildv~---~~gv----k~L~~~~~~Pi~IFI~pps 155 (225)
++++.++|+|-. +..+ +.++.+++...++||..|.
T Consensus 90 ~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~ 131 (199)
T PF06414_consen 90 IENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPP 131 (199)
T ss_dssp HHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---H
T ss_pred HHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCH
Confidence 889999999953 2333 3455556555666776553
No 111
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=95.80 E-value=0.028 Score=46.90 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=75.5
Q ss_pred ccEEEEccCCCCCCCc----ccCCCCCCCCCCcceEEecCHHHHHHhh-----hCCcEEEEE-------EeCCcceeecH
Q psy10228 51 EPFMLCYTQDDPTTED----TTRARREYEVDGRDYHFVSSREQMEKDI-----QNHLFIEAG-------QYNDNLYGTSV 114 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s~----TTRp~R~~E~dG~dY~FV~s~eef~~~i-----~~~~FiE~~-------~~~gn~YGTs~ 114 (225)
++|+|-|||.|||||. -.+-+ .-|+.+ +-+.|..++ ..+.-++|+ ......|-.-.
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~-------~p~~~l-~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLP-------EPWLHL-SVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMH 73 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSS-------S-EEEE-EHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCc-------CCeEEE-ecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHH
Confidence 6899999999999911 11122 234445 788888844 333445554 22234566677
Q ss_pred HHHHHHHHcCCeEEEE-c--cHHH-HHHHHh-hccCC-eEEEEecCCHHHHHH-HhccCC--HHHHHHHHHHHHHHHH-h
Q psy10228 115 ASVRDVAEKGKHCILD-V--SGNA-IKRLQV-ASLYP-VAIFIKPKSVESIME-MNKRMT--EEQAKKMYDRSMKMEQ-E 184 (225)
Q Consensus 115 ~sV~~v~~~gk~~ild-v--~~~g-vk~L~~-~~~~P-i~IFI~pps~~~L~~-L~~R~s--eeei~~rl~~a~k~E~-~ 184 (225)
.+|...++.|-.+|+| + ++.. ...++. -.-+| ..|=|.+| .+++++ -+.|++ .. +.+. +.+. .
T Consensus 74 ~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cp-leil~~RE~~RgDR~~G-----~a~~-q~~~Vh 146 (174)
T PF07931_consen 74 AAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCP-LEILERRERARGDRPIG-----LAAW-QAEHVH 146 (174)
T ss_dssp HHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE---HHHHHHHHHHHTSSSTT-----HHHH-HTTGGG
T ss_pred HHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECC-HHHHHHHHHhcCCcchH-----HHHH-HHhhcc
Confidence 8888899999999998 2 3332 233322 12244 44555665 667665 444542 11 1111 1221 2
Q ss_pred hCCCCcEEEECC--CHHHHHHHHHHHH
Q psy10228 185 FGEFFTAVVQGD--MPEDIYQKVKEVI 209 (225)
Q Consensus 185 ~~~~fd~vI~Nd--dleea~~~lk~iI 209 (225)
-...||..|... +++++.++|.+.+
T Consensus 147 ~~~~YDleVDTs~~sp~ecA~~I~~~~ 173 (174)
T PF07931_consen 147 EGGRYDLEVDTSATSPEECAREILARL 173 (174)
T ss_dssp TT---SEEEETTSS-HHHHHHHHHTT-
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHh
Confidence 234689988765 6888888887644
No 112
>PRK06217 hypothetical protein; Validated
Probab=95.78 E-value=0.06 Score=44.42 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=25.3
Q ss_pred HHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhcc
Q psy10228 118 RDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKR 165 (225)
Q Consensus 118 ~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R 165 (225)
.+.+..+...|+|-.+...... .....-.+|||.+|....+.++..|
T Consensus 58 ~~~~~~~~~~vi~G~~~~~~~~-~~~~~d~~i~Ld~~~~~~~~Rl~~R 104 (183)
T PRK06217 58 LEDLRPREGWVLSGSALGWGDP-LEPLFDLVVFLTIPPELRLERLRLR 104 (183)
T ss_pred HHHHhcCCCEEEEccHHHHHHH-HHhhCCEEEEEECCHHHHHHHHHcC
Confidence 3344445667877554432111 1223447899998765555555544
No 113
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.77 E-value=0.022 Score=55.32 Aligned_cols=95 Identities=11% Similarity=0.155 Sum_probs=57.4
Q ss_pred CCCccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeE
Q psy10228 48 SDQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHC 127 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ 127 (225)
...++||++|++|||||+..-+-... ..|..| +.+.+.. |-.-...+++.+++|+.+
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~-----~g~~~v-n~D~lg~-----------------~~~~~~~a~~~L~~G~sV 423 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQP-----AGYKHV-NADTLGS-----------------TQNCLTACERALDQGKRC 423 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH-----cCCeEE-CcHHHHH-----------------HHHHHHHHHHHHhCCCcE
Confidence 44679999999999999443332211 147778 7776531 223456678899999999
Q ss_pred EEEcc---H---HHHHHHHhhccCC-eEEEEecCCHHHHHH-HhccC
Q psy10228 128 ILDVS---G---NAIKRLQVASLYP-VAIFIKPKSVESIME-MNKRM 166 (225)
Q Consensus 128 ildv~---~---~gvk~L~~~~~~P-i~IFI~pps~~~L~~-L~~R~ 166 (225)
|+|-. . ..+..|-...-+| ..|++..| .+.+++ ++.|.
T Consensus 424 VIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p-~e~~~~Rn~~R~ 469 (526)
T TIGR01663 424 AIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAP-LAQAKHNIAFRE 469 (526)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCC-HHHHHHHHHhhc
Confidence 99842 2 2222222222245 45666665 566654 55553
No 114
>PLN02842 nucleotide kinase
Probab=95.71 E-value=0.16 Score=49.08 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=30.5
Q ss_pred HhccC--CHHHHHHHHHHHHHHHHhhCCCCcE---EEEC-CCHHHHHHHHHHHHHhcc
Q psy10228 162 MNKRM--TEEQAKKMYDRSMKMEQEFGEFFTA---VVQG-DMPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 162 L~~R~--seeei~~rl~~a~k~E~~~~~~fd~---vI~N-ddleea~~~lk~iI~~~~ 213 (225)
|.+|. +++.+++||....+.-.....+|.. .|.. .++++.+++|..+|.+..
T Consensus 147 L~~R~DD~eE~IkkRL~~Y~~~t~pIl~~Y~~rl~~IDAsqs~EeVfeeI~~iL~~~L 204 (505)
T PLN02842 147 LITRPDDTEEKVKARLQIYKKNAEAILSTYSDIMVKIDGNRPKEVVFEEISSLLSQIQ 204 (505)
T ss_pred cccCCCCCHHHHHHHHHHHHHHhhhHHHhcCcEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 44444 3678999988775322222222222 2222 268999999988887543
No 115
>PRK14529 adenylate kinase; Provisional
Probab=95.61 E-value=0.17 Score=43.88 Aligned_cols=12 Identities=0% Similarity=0.019 Sum_probs=11.5
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+|.||+||||+
T Consensus 3 I~l~G~PGsGK~ 14 (223)
T PRK14529 3 ILIFGPNGSGKG 14 (223)
T ss_pred EEEECCCCCCHH
Confidence 889999999999
No 116
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.51 E-value=0.046 Score=43.17 Aligned_cols=13 Identities=0% Similarity=-0.056 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
+|+|+|++|||||
T Consensus 1 li~l~G~~GsGKS 13 (150)
T cd02021 1 IIVVMGVSGSGKS 13 (150)
T ss_pred CEEEEcCCCCCHH
Confidence 4799999999998
No 117
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=95.47 E-value=0.031 Score=52.25 Aligned_cols=70 Identities=9% Similarity=0.208 Sum_probs=47.9
Q ss_pred cCCeEEEEecCCHHHHHHHhc-cC-CHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhccC
Q psy10228 144 LYPVAIFIKPKSVESIMEMNK-RM-TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQSG 214 (225)
Q Consensus 144 ~~Pi~IFI~pps~~~L~~L~~-R~-seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~~~ 214 (225)
.+..+|||.+|.-..++++.. |+ +.+++..++..... ........|++|.|+ +++++..++..++.....
T Consensus 123 ~~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a~~ri~~Q~~-~e~k~~~AD~vIdN~~s~e~l~~~v~~~l~~~~~ 195 (395)
T PRK03333 123 LFHLVVVVDADVEVRVRRLVEQRGMAEADARARIAAQAS-DEQRRAVADVWLDNSGTPDELVEAVRALWADRLL 195 (395)
T ss_pred hCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHhcCC-hHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 345889999987666666544 44 67777777765321 112235669999987 799999999988875543
No 118
>PTZ00301 uridine kinase; Provisional
Probab=95.47 E-value=0.081 Score=45.30 Aligned_cols=69 Identities=13% Similarity=0.077 Sum_probs=38.2
Q ss_pred ccCCeEEEEecCCHHHHHH-----HhccC-CHHHHHHHHHH-HHHHHHh----hCCCCcEEEECC-CHHHHHHHHHHHHH
Q psy10228 143 SLYPVAIFIKPKSVESIME-----MNKRM-TEEQAKKMYDR-SMKMEQE----FGEFFTAVVQGD-MPEDIYQKVKEVIQ 210 (225)
Q Consensus 143 ~~~Pi~IFI~pps~~~L~~-----L~~R~-seeei~~rl~~-a~k~E~~----~~~~fd~vI~Nd-dleea~~~lk~iI~ 210 (225)
.++-+.|||.+|.-..+.+ +..|+ +.+++.++... ....... .....|.||.+. +.+.++..|...|.
T Consensus 125 ~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~~~~~~~~~~~~~~ 204 (210)
T PTZ00301 125 NEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRAKLN 204 (210)
T ss_pred HhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHHHHHHhhcccHHHHcCccccCCcEEEcCCCcchHHHHHHHHHHH
Confidence 4566889999876333333 22344 45555443333 2222222 246788988755 56667766655554
Q ss_pred h
Q psy10228 211 E 211 (225)
Q Consensus 211 ~ 211 (225)
.
T Consensus 205 ~ 205 (210)
T PTZ00301 205 H 205 (210)
T ss_pred H
Confidence 3
No 119
>PRK08118 topology modulation protein; Reviewed
Probab=95.46 E-value=0.067 Score=43.88 Aligned_cols=13 Identities=8% Similarity=0.077 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+||+|||||
T Consensus 3 rI~I~G~~GsGKS 15 (167)
T PRK08118 3 KIILIGSGGSGKS 15 (167)
T ss_pred EEEEECCCCCCHH
Confidence 3899999999999
No 120
>KOG3220|consensus
Probab=95.46 E-value=0.13 Score=44.40 Aligned_cols=92 Identities=16% Similarity=0.247 Sum_probs=62.3
Q ss_pred CCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHH
Q psy10228 124 GKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPED 200 (225)
Q Consensus 124 gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dlee 200 (225)
.+.|++|+-.- ... ....+.-.+|-+.++.-.++++|-.|. |+++++.|++.-+-+|... ...|+||.|+ ++++
T Consensus 107 ~r~ivlDiPLL-FE~-~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dAe~Rl~sQmp~~~k~-~~a~~Vi~Nng~~~~ 183 (225)
T KOG3220|consen 107 YRVIVLDIPLL-FEA-KLLKICHKTVVVTCDEELQLERLVERDELSEEDAENRLQSQMPLEKKC-ELADVVIDNNGSLED 183 (225)
T ss_pred CeEEEEechHH-HHH-hHHhheeeEEEEEECcHHHHHHHHHhccccHHHHHHHHHhcCCHHHHH-HhhheeecCCCChHH
Confidence 56788897541 111 111233355666667778888866665 7889988887654334333 4668899876 7999
Q ss_pred HHHHHHHHHHhccCCcee
Q psy10228 201 IYQKVKEVIQEQSGPSIW 218 (225)
Q Consensus 201 a~~~lk~iI~~~~~~~~W 218 (225)
+++++..++...+..-.|
T Consensus 184 l~~qv~~v~~~~~~s~~~ 201 (225)
T KOG3220|consen 184 LYEQVEKVLALLQKSIPK 201 (225)
T ss_pred HHHHHHHHHHHhcchhHH
Confidence 999999998888776444
No 121
>PRK07667 uridine kinase; Provisional
Probab=95.42 E-value=0.046 Score=45.72 Aligned_cols=82 Identities=10% Similarity=0.103 Sum_probs=42.8
Q ss_pred hhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC--CHHH
Q psy10228 93 DIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM--TEEQ 170 (225)
Q Consensus 93 ~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~--seee 170 (225)
.+..+.-+.+-.|+-.. +....... .+..+.++|+|.-. +-......++..+|||.+|.-..++++.+|. +.++
T Consensus 91 ~L~~~~~i~~P~~d~~~-~~~~~~~~-~~~~~~vvIvEG~~--l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~~~~~~~ 166 (193)
T PRK07667 91 KLQNETKLTLPFYHDET-DTCEMKKV-QIPIVGVIVIEGVF--LQRKEWRDFFHYMVYLDCPRETRFLRESEETQKNLSK 166 (193)
T ss_pred hhcCCCeEEEeeecccc-ccccccce-ecCCCCEEEEEehh--hhhhhHHhhceEEEEEECCHHHHHHHHhcccHhHHHH
Confidence 34555666666654321 11111000 12335666766543 2112223456789999998766666666665 3456
Q ss_pred HHHHHHHH
Q psy10228 171 AKKMYDRS 178 (225)
Q Consensus 171 i~~rl~~a 178 (225)
...|...|
T Consensus 167 ~~~r~~~a 174 (193)
T PRK07667 167 FKNRYWKA 174 (193)
T ss_pred HHHHhHHH
Confidence 66666544
No 122
>PRK07261 topology modulation protein; Provisional
Probab=95.30 E-value=0.068 Score=43.92 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=25.0
Q ss_pred cHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH
Q psy10228 113 SVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME 161 (225)
Q Consensus 113 s~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~ 161 (225)
-...+.+++.++. .|+|-.......-......-.+||+.+|-...+.+
T Consensus 48 ~~~~~~~~~~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R 95 (171)
T PRK07261 48 MIADISNFLLKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYR 95 (171)
T ss_pred HHHHHHHHHhCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHH
Confidence 3445566676666 67665543321111112233678888876444444
No 123
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.26 E-value=0.27 Score=47.71 Aligned_cols=28 Identities=14% Similarity=0.398 Sum_probs=22.8
Q ss_pred EEEECC--CHHHHHHHHHHHHHhccCCcee
Q psy10228 191 AVVQGD--MPEDIYQKVKEVIQEQSGPSIW 218 (225)
Q Consensus 191 ~vI~Nd--dleea~~~lk~iI~~~~~~~~W 218 (225)
++|.++ ++++.++.|.+.|...-.+.+|
T Consensus 481 i~IDTs~lsieeVv~~Il~~i~~~~~~~~~ 510 (512)
T PRK13477 481 IELITDGLSIEEVVDKIIDLYRDRIPEEVW 510 (512)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHhCccccC
Confidence 445444 6999999999999987888888
No 124
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.16 E-value=0.31 Score=47.45 Aligned_cols=150 Identities=15% Similarity=0.216 Sum_probs=76.2
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhC--Cc-EEEEEEeCCcceeecHHHHHHHHHcCCe
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQN--HL-FIEAGQYNDNLYGTSVASVRDVAEKGKH 126 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~--~~-FiE~~~~~gn~YGTs~~sV~~v~~~gk~ 126 (225)
...|+|+|..|||||+.--+-. +. -.|-|+++.+.+++.... .+ |-++|+- ++.-.=.+.+++++.. ..
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA---~~--L~~~fiD~D~~ie~~~g~si~eif~~~Ge~--~FR~~E~~~l~~~~~~-~~ 77 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVA---QM--MRLPFADADVEIEREIGMSIPSYFEEYGEP--AFREVEADVVADMLED-FD 77 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHH---HH--hCCCEEEchHHHHHHHCcCHHHHHHHHHHH--HHHHHHHHHHHHHHhc-CC
Confidence 3579999999999992211110 00 123466444455543210 00 1111110 1111122334444433 34
Q ss_pred EEEEcc------HHHHHHHHh-hccCCeEEEEecCCHHHHH-HHhc---cC-----CHHHHHHHHHHHHHHHHhhCCCCc
Q psy10228 127 CILDVS------GNAIKRLQV-ASLYPVAIFIKPKSVESIM-EMNK---RM-----TEEQAKKMYDRSMKMEQEFGEFFT 190 (225)
Q Consensus 127 ~ildv~------~~gvk~L~~-~~~~Pi~IFI~pps~~~L~-~L~~---R~-----seeei~~rl~~a~k~E~~~~~~fd 190 (225)
||+.+. ++..+.|+. ......+|||..+ .+.+. ++.. |. +.+.+.+.+++- +..|....|
T Consensus 78 ~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~-~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R---~~~Y~~~Ad 153 (542)
T PRK14021 78 GIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDAD-PKEAMERANRGGGRPMLNGDANKRWKKLFKQR---DPVFRQVAN 153 (542)
T ss_pred eEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECC-HHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHH---HHHHHhhCC
Confidence 566543 333444421 1123478999986 45554 3532 21 123444444331 345667889
Q ss_pred EEEECC--CHHHHHHHHHHHHHh
Q psy10228 191 AVVQGD--MPEDIYQKVKEVIQE 211 (225)
Q Consensus 191 ~vI~Nd--dleea~~~lk~iI~~ 211 (225)
++|.++ ++++++.++.+.+..
T Consensus 154 ~~i~~~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 154 VHVHTRGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred EEEECCCCCHHHHHHHHHHHHHh
Confidence 998865 689999999998864
No 125
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=95.12 E-value=0.012 Score=58.08 Aligned_cols=151 Identities=11% Similarity=0.158 Sum_probs=76.5
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCc----ceeecHHHHHHHHHcCC
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDN----LYGTSVASVRDVAEKGK 125 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn----~YGTs~~sV~~v~~~gk 125 (225)
..+|+++|.+|||||+..-+-.+.-...|..+.|+ +.+.+.+.+..+. .|... .|-.........+++|.
T Consensus 460 ~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l-~~D~~r~~l~~~~-----~~~~~~r~~~~~~l~~~a~~~~~~G~ 533 (632)
T PRK05506 460 PATVWFTGLSGSGKSTIANLVERRLHALGRHTYLL-DGDNVRHGLNRDL-----GFSDADRVENIRRVAEVARLMADAGL 533 (632)
T ss_pred cEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEE-cChhhhhccCCCC-----CCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 56899999999999932221111111246788899 7888887554221 01100 11111112233456798
Q ss_pred eEEEEcc---HHHHHHHHh-hccCC-eEEEEecCCHHHHHHHhccC-----CHHHHHHHHHHHHHHHHhhC--CCCcEEE
Q psy10228 126 HCILDVS---GNAIKRLQV-ASLYP-VAIFIKPKSVESIMEMNKRM-----TEEQAKKMYDRSMKMEQEFG--EFFTAVV 193 (225)
Q Consensus 126 ~~ildv~---~~gvk~L~~-~~~~P-i~IFI~pps~~~L~~L~~R~-----seeei~~rl~~a~k~E~~~~--~~fd~vI 193 (225)
.+++|.. ..-...++. ..-.+ .+||+.+| .+.+.+-..|. ..+++. ........|. ...+++|
T Consensus 534 ~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~-~e~~~~R~~r~L~~~~~~~~l~----~l~~~r~~y~~P~~a~~~I 608 (632)
T PRK05506 534 IVLVSFISPFREERELARALHGEGEFVEVFVDTP-LEVCEARDPKGLYAKARAGEIK----NFTGIDSPYEAPENPELRL 608 (632)
T ss_pred EEEEECCCCCHHHHHHHHHhcccCCeEEEEECCC-HHHHHhhCCcchhhhccccccc----cccccccCCCCCCCCeEEE
Confidence 8888853 111111221 11124 67888876 45544311121 011111 1101112233 3456777
Q ss_pred ECC--CHHHHHHHHHHHHHh
Q psy10228 194 QGD--MPEDIYQKVKEVIQE 211 (225)
Q Consensus 194 ~Nd--dleea~~~lk~iI~~ 211 (225)
.++ +++++++++.+.+..
T Consensus 609 d~~~~s~~e~v~~Ii~~l~~ 628 (632)
T PRK05506 609 DTTGRSPEELAEQVLELLRR 628 (632)
T ss_pred eCCCCCHHHHHHHHHHHHHH
Confidence 764 689999999888865
No 126
>PRK09087 hypothetical protein; Validated
Probab=95.06 E-value=0.081 Score=45.64 Aligned_cols=104 Identities=9% Similarity=0.065 Sum_probs=52.2
Q ss_pred ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhh----hCCcEEEEEEeCCc--ceeecHHHHHHHHHcC
Q psy10228 51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDI----QNHLFIEAGQYNDN--LYGTSVASVRDVAEKG 124 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i----~~~~FiE~~~~~gn--~YGTs~~sV~~v~~~g 124 (225)
.+++|.||+||||| |-.+.--. + -+ ..|+ +.+.|...+ ..+.++ --..+.. -...-..-+..+.+.|
T Consensus 45 ~~l~l~G~~GsGKT-hLl~~~~~-~-~~--~~~i-~~~~~~~~~~~~~~~~~l~-iDDi~~~~~~~~~lf~l~n~~~~~g 117 (226)
T PRK09087 45 PVVVLAGPVGSGKT-HLASIWRE-K-SD--ALLI-HPNEIGSDAANAAAEGPVL-IEDIDAGGFDETGLFHLINSVRQAG 117 (226)
T ss_pred CeEEEECCCCCCHH-HHHHHHHH-h-cC--CEEe-cHHHcchHHHHhhhcCeEE-EECCCCCCCCHHHHHHHHHHHHhCC
Confidence 46999999999999 11110000 0 01 1256 454433322 222222 1111110 0111233445556778
Q ss_pred CeEEEEcc--HHH----HHHHHhhccCCeEEEEecCCHHHHHH
Q psy10228 125 KHCILDVS--GNA----IKRLQVASLYPVAIFIKPKSVESIME 161 (225)
Q Consensus 125 k~~ildv~--~~g----vk~L~~~~~~Pi~IFI~pps~~~L~~ 161 (225)
+..|+-.+ +.. ...|+.+--...++-|.||+.+.+.+
T Consensus 118 ~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~ 160 (226)
T PRK09087 118 TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQ 160 (226)
T ss_pred CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHH
Confidence 88777553 221 23455443456789999999877766
No 127
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.03 E-value=0.01 Score=49.51 Aligned_cols=99 Identities=18% Similarity=0.202 Sum_probs=47.3
Q ss_pred HhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHH---hhccCCeEEEEecCCHHHHHH-----Hh
Q psy10228 92 KDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQ---VASLYPVAIFIKPKSVESIME-----MN 163 (225)
Q Consensus 92 ~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~---~~~~~Pi~IFI~pps~~~L~~-----L~ 163 (225)
..+.+|.-++.-.|.-..+..... ..+.....++|++ + +-.|. .+.+.-+.|||.++.--.+.+ ..
T Consensus 77 ~~L~~g~~i~~p~yd~~~~~~~~~--~~~~~~~~ivIvE--G--~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~ 150 (194)
T PF00485_consen 77 KALKNGGSIEIPIYDFSTGDRDPW--IIIISPSDIVIVE--G--IYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVA 150 (194)
T ss_dssp HHHHTTSCEEEEEEETTTTEEEEE--EEEEES-SEEEEE--E--TTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHH
T ss_pred HHHhCCCcccccccccccccceee--eeecCCCCEEEEc--c--cceeeeeeecccceeEEEecccHHHHHHHHhhhhcc
Confidence 345667777776664222111100 0112234555555 2 11121 135667899999865333443 33
Q ss_pred ccC-CHHHHHHHHHHHHHHHHhh----CCCCcEEEECC
Q psy10228 164 KRM-TEEQAKKMYDRSMKMEQEF----GEFFTAVVQGD 196 (225)
Q Consensus 164 ~R~-seeei~~rl~~a~k~E~~~----~~~fd~vI~Nd 196 (225)
.|+ +.+++.+++......+..| ....|.||.+-
T Consensus 151 ~rG~~~~~~~~~~~~~~~~~~~~I~p~~~~ADivi~~~ 188 (194)
T PF00485_consen 151 ERGRSPEEVIAQYERVRPGYERYIEPQKERADIVIPSG 188 (194)
T ss_dssp HS-S-HHHHHHHHHTHHHHHHHCTGGGGGG-SEEEESC
T ss_pred ccCCcceeEEEEeecCChhhhhheeccccccEEEECCC
Confidence 455 5677776766554444444 35789988764
No 128
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.87 E-value=0.014 Score=46.90 Aligned_cols=104 Identities=9% Similarity=0.051 Sum_probs=47.0
Q ss_pred cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeC-CcceeecHHHHHHHHHcCCeEEEE
Q psy10228 52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYN-DNLYGTSVASVRDVAEKGKHCILD 130 (225)
Q Consensus 52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~-gn~YGTs~~sV~~v~~~gk~~ild 130 (225)
.++|+|++|||||+....--+.-+..|..+.++ +.+.+.+.+..+.. |..-. ...|-......+..+++|.++|+|
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i-~~d~~r~~l~~~~~--~~~~~~~~~~~~~~~~a~~l~~~G~~VIid 77 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVL-DGDNVRHGLNKDLG--FSREDREENIRRIAEVAKLLADAGLIVIAA 77 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEE-cCHHHHHhhhhccC--CCcchHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 478999999999822111111111224455555 55556554332210 00000 001111111223345679999998
Q ss_pred ccHH--H-HHHHHh-hccCC-eEEEEecCCHHHH
Q psy10228 131 VSGN--A-IKRLQV-ASLYP-VAIFIKPKSVESI 159 (225)
Q Consensus 131 v~~~--g-vk~L~~-~~~~P-i~IFI~pps~~~L 159 (225)
..-. . ...++. ..-.+ ..||+.+| .+++
T Consensus 78 ~~~~~~~~R~~~~~l~~~~~~~~i~l~~~-~e~~ 110 (149)
T cd02027 78 FISPYREDREAARKIIGGGDFLEVFVDTP-LEVC 110 (149)
T ss_pred cCCCCHHHHHHHHHhcCCCCEEEEEEeCC-HHHH
Confidence 5421 1 111111 11133 57889887 4544
No 129
>PRK06547 hypothetical protein; Provisional
Probab=94.85 E-value=0.33 Score=40.11 Aligned_cols=16 Identities=6% Similarity=-0.068 Sum_probs=13.6
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
....|+|+|+||||||
T Consensus 14 ~~~~i~i~G~~GsGKT 29 (172)
T PRK06547 14 GMITVLIDGRSGSGKT 29 (172)
T ss_pred CCEEEEEECCCCCCHH
Confidence 3457888999999999
No 130
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=94.83 E-value=0.064 Score=45.75 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=16.1
Q ss_pred CC-eEEEEecCCHHHHHHHhccCC
Q psy10228 145 YP-VAIFIKPKSVESIMEMNKRMT 167 (225)
Q Consensus 145 ~P-i~IFI~pps~~~L~~L~~R~s 167 (225)
.| .+|||.+|....++++.+|+.
T Consensus 142 ~Pd~~i~l~~~~~~~~~Ri~~R~~ 165 (219)
T cd02030 142 PPHLVIYLDVPVPEVQKRIKKRGD 165 (219)
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCC
Confidence 35 789999876455555877774
No 131
>PRK07429 phosphoribulokinase; Provisional
Probab=94.82 E-value=0.064 Score=49.03 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=33.5
Q ss_pred ccCCeEEEEecCCHHHHH----H-HhccC-CHHHHHHHHHHHHHHHHhh----CCCCcEEEECC
Q psy10228 143 SLYPVAIFIKPKSVESIM----E-MNKRM-TEEQAKKMYDRSMKMEQEF----GEFFTAVVQGD 196 (225)
Q Consensus 143 ~~~Pi~IFI~pps~~~L~----~-L~~R~-seeei~~rl~~a~k~E~~~----~~~fd~vI~Nd 196 (225)
.++...|||.++.-..+. + +..|+ +.+++.+++++....+..| ....|+||.+-
T Consensus 123 ~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i~~r~pd~~~yI~P~k~~ADiVI~~~ 186 (327)
T PRK07429 123 ELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIEAREPDFEAYIRPQRQWADVVIQFL 186 (327)
T ss_pred hhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHhCccHhhhhcccccCCCEEEEcC
Confidence 466789999987543332 2 44454 6778877776543222332 46788988864
No 132
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.70 E-value=0.37 Score=39.32 Aligned_cols=12 Identities=8% Similarity=0.008 Sum_probs=11.6
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+|+||+||||+
T Consensus 2 I~i~G~pGsGKs 13 (194)
T cd01428 2 ILLLGPPGSGKG 13 (194)
T ss_pred EEEECCCCCCHH
Confidence 799999999999
No 133
>PRK00023 cmk cytidylate kinase; Provisional
Probab=94.70 E-value=0.77 Score=39.50 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=37.5
Q ss_pred CCeEEEEecCCHHHHHH-Hh---ccC---CHHHHHHHHHHHHHHHHhh-----CCCCcEEEECC---CHHHHHHHHHHHH
Q psy10228 145 YPVAIFIKPKSVESIME-MN---KRM---TEEQAKKMYDRSMKMEQEF-----GEFFTAVVQGD---MPEDIYQKVKEVI 209 (225)
Q Consensus 145 ~Pi~IFI~pps~~~L~~-L~---~R~---seeei~~rl~~a~k~E~~~-----~~~fd~vI~Nd---dleea~~~lk~iI 209 (225)
..+.|||.+|.....++ ++ .++ +.+++.+.+..-.+.+..+ ...-|++++|. +++++++.|.++|
T Consensus 140 a~~~ifl~a~~e~R~~Rr~~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs~l~~ee~v~~I~~~i 219 (225)
T PRK00023 140 AELKIFLTASAEERAERRYKELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSGLSIEEVVEKILALV 219 (225)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECCCCCHHHHHHHHHHHH
Confidence 45789999876433232 22 222 4555555444433323321 12345555544 6899999999998
Q ss_pred Hh
Q psy10228 210 QE 211 (225)
Q Consensus 210 ~~ 211 (225)
..
T Consensus 220 ~~ 221 (225)
T PRK00023 220 EE 221 (225)
T ss_pred HH
Confidence 64
No 134
>PRK00625 shikimate kinase; Provisional
Probab=94.63 E-value=0.5 Score=39.13 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.|+|+|++|||||
T Consensus 2 ~I~LiG~pGsGKT 14 (173)
T PRK00625 2 QIFLCGLPTVGKT 14 (173)
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 135
>PLN02459 probable adenylate kinase
Probab=94.60 E-value=0.23 Score=44.11 Aligned_cols=46 Identities=9% Similarity=0.002 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHH----hhCCC-CcEEEE-CCCHHHHHHHHHHHHHhcc
Q psy10228 168 EEQAKKMYDRSMKMEQ----EFGEF-FTAVVQ-GDMPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 168 eeei~~rl~~a~k~E~----~~~~~-fd~vI~-Nddleea~~~lk~iI~~~~ 213 (225)
++.+++||+...+.-. .|... .-+.|. +.++++.+.+|..+|....
T Consensus 202 ~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~~~ 253 (261)
T PLN02459 202 EEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLDD 253 (261)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhchhh
Confidence 6778899988753211 12211 122333 3479999999999987543
No 136
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.50 E-value=0.035 Score=54.32 Aligned_cols=155 Identities=11% Similarity=0.104 Sum_probs=74.7
Q ss_pred CccEEEEccCCCCCCCcccCCC-CCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeC-CcceeecHHHHHHHHHcCCeE
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRAR-REYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYN-DNLYGTSVASVRDVAEKGKHC 127 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~-R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~-gn~YGTs~~sV~~v~~~gk~~ 127 (225)
...|+|+|++|||||+.-..-. +-++..|.+..|+ +-+.+.+.+..+. .|..-. ...|..-...-..+++.|..+
T Consensus 392 g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~l-D~D~vr~~l~ge~--~f~~~er~~~~~~l~~~a~~v~~~Gg~v 468 (568)
T PRK05537 392 GFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLL-DGDVVRKHLSSEL--GFSKEDRDLNILRIGFVASEITKNGGIA 468 (568)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEe-CCcHHHHhccCCC--CCCHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 3478999999999992211111 1222345666777 4555543322110 000000 001110001123467789999
Q ss_pred EEEc-cH-----HHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC----CHHHHHHHHHHHHHHHHhhC--CCCcEEEE
Q psy10228 128 ILDV-SG-----NAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM----TEEQAKKMYDRSMKMEQEFG--EFFTAVVQ 194 (225)
Q Consensus 128 ildv-~~-----~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~----seeei~~rl~~a~k~E~~~~--~~fd~vI~ 194 (225)
|++. .+ ...+.+-...-..++||+..| .+++.+ .++.+ ..++++..+.. ...|- ...|.+|.
T Consensus 469 I~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p-~e~l~~R~rr~Ll~~~~~~~i~~l~~~----R~~yy~p~~Adl~ID 543 (568)
T PRK05537 469 ICAPIAPYRATRREVREMIEAYGGFIEVHVATP-LEVCEQRDRKGLYAKAREGKIKGFTGI----SDPYEPPANPELVID 543 (568)
T ss_pred EEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCC-HHHHHHhccccccccchhchhhccccc----cccccCCCCCcEEEE
Confidence 9883 22 112222111111257899876 566543 32221 11222222111 11122 34678887
Q ss_pred CC--CHHHHHHHHHHHHHhc
Q psy10228 195 GD--MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 195 Nd--dleea~~~lk~iI~~~ 212 (225)
++ ++++++++|...|...
T Consensus 544 t~~~s~~eiv~~Il~~L~~~ 563 (568)
T PRK05537 544 TTNVTPDECAHKILLYLEEK 563 (568)
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 65 6899999999888753
No 137
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=94.49 E-value=0.71 Score=44.37 Aligned_cols=91 Identities=16% Similarity=0.193 Sum_probs=48.9
Q ss_pred HHHHHHcCCeEEEE---ccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--C------H------HHHHHHHHHH
Q psy10228 117 VRDVAEKGKHCILD---VSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--T------E------EQAKKMYDRS 178 (225)
Q Consensus 117 V~~v~~~gk~~ild---v~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--s------e------eei~~rl~~a 178 (225)
|+..+..|..+|+| +.|.-+......+-.-+.++|..++.+..++ +..|. + + ++|+.+.+..
T Consensus 352 I~r~l~eG~SvIIEGVHl~P~~i~~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~~~~~r~~~ky~~~f~~IR~IQdyL 431 (475)
T PRK12337 352 QERSAQEGTSLVLEGVHLVPGYLRHPYQAGALVVPMLVTLPDEALHRRRFELRDRETGASRPRERYLRHFEEIRLIQDHL 431 (475)
T ss_pred HHHHHHcCCeEEEECCCCCHHHHHHHHhcCCceEEEEEEECCHHHHHHHHHHHhhhccCCCchhHHHHhHHHHHHHHHHH
Confidence 34566779999987 3454443222122122445777778777664 44332 1 1 2232221111
Q ss_pred HHHHHhhCCCCcE-EEECCCHHHHHHHHHHHHHh
Q psy10228 179 MKMEQEFGEFFTA-VVQGDMPEDIYQKVKEVIQE 211 (225)
Q Consensus 179 ~k~E~~~~~~fd~-vI~Nddleea~~~lk~iI~~ 211 (225)
++. +..++. +|.|.|++++++.+.+.|-+
T Consensus 432 --v~~--A~~~~ipvI~n~nid~tv~~~l~~i~~ 461 (475)
T PRK12337 432 --LRL--ARQEGVPVLPGEDLDESIDKALEVVLR 461 (475)
T ss_pred --HHH--HHHcCCCeecCccHHHHHHHHHHHHHH
Confidence 111 223333 56788999999998887754
No 138
>COG1162 Predicted GTPases [General function prediction only]
Probab=94.39 E-value=0.0087 Score=54.08 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=48.0
Q ss_pred CccEEEEccCCCCCC------------------------CcccCCCCCCCCC-C-----------cceEEecCHHHHHHh
Q psy10228 50 QEPFMLCYTQDDPTT------------------------EDTTRARREYEVD-G-----------RDYHFVSSREQMEKD 93 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~------------------------s~TTRp~R~~E~d-G-----------~dY~FV~s~eef~~~ 93 (225)
.+..||+|+||+||| .||||.-+....+ | -+++.+ ++++....
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~-~~e~l~~~ 242 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHL-EPEDLVQA 242 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccC-CHHHHHHH
Confidence 458899999999998 8999998877764 2 244445 66654432
Q ss_pred hhCCcEEEEEEeCC-------cceeecHHHHHHHHHcCCe
Q psy10228 94 IQNHLFIEAGQYND-------NLYGTSVASVRDVAEKGKH 126 (225)
Q Consensus 94 i~~~~FiE~~~~~g-------n~YGTs~~sV~~v~~~gk~ 126 (225)
|.|+..+.+ ..=+=+-.+|+++++.|.+
T Consensus 243 -----F~ef~~~~~~CkFr~C~H~~EPgCav~~av~~g~i 277 (301)
T COG1162 243 -----FPEFAELARQCKFRDCTHTHEPGCAVKAAVEEGEI 277 (301)
T ss_pred -----hHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHcCCC
Confidence 443333322 2234477889999999875
No 139
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.35 E-value=0.6 Score=38.59 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=13.5
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
++.++|+||||||||
T Consensus 3 ge~i~l~G~sGsGKS 17 (176)
T PRK09825 3 GESYILMGVSGSGKS 17 (176)
T ss_pred CcEEEEECCCCCCHH
Confidence 357899999999999
No 140
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.31 E-value=0.15 Score=40.54 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=31.9
Q ss_pred CCeEEEEccHHHH---HHHHh----hccCC-eEEEEecCCHHHHHHHhccCCHHHHHHHHHHHH
Q psy10228 124 GKHCILDVSGNAI---KRLQV----ASLYP-VAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSM 179 (225)
Q Consensus 124 gk~~ildv~~~gv---k~L~~----~~~~P-i~IFI~pps~~~L~~L~~R~seeei~~rl~~a~ 179 (225)
.+..|||--|... +.|.. ....| .+|++..|....++++.. .+++.+++|++...
T Consensus 74 ~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~-d~~~~i~~Rl~~y~ 136 (151)
T PF00406_consen 74 NRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ-DNEEVIKKRLEEYR 136 (151)
T ss_dssp TTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT-GSHHHHHHHHHHHH
T ss_pred cceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc-CCHHHHHHHHHHHH
Confidence 5678888655433 33333 23445 778888876443334444 56788888888774
No 141
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=94.19 E-value=0.15 Score=42.02 Aligned_cols=13 Identities=0% Similarity=-0.151 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
+|+|.|+.|||||
T Consensus 1 ~I~ieG~~GsGKS 13 (193)
T cd01673 1 VIVVEGNIGAGKS 13 (193)
T ss_pred CEEEECCCCCCHH
Confidence 4899999999999
No 142
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.99 E-value=0.11 Score=51.36 Aligned_cols=71 Identities=10% Similarity=0.111 Sum_probs=38.5
Q ss_pred hccCCeEEEEecC-CHHHHHHHh----ccC-CHHHHHHHHHHH-HHHHHhh----CCCCcEEEEC--------CC-----
Q psy10228 142 ASLYPVAIFIKPK-SVESIMEMN----KRM-TEEQAKKMYDRS-MKMEQEF----GEFFTAVVQG--------DM----- 197 (225)
Q Consensus 142 ~~~~Pi~IFI~pp-s~~~L~~L~----~R~-seeei~~rl~~a-~k~E~~~----~~~fd~vI~N--------dd----- 197 (225)
+.++.+.|||..| +++.++++. .|+ +.+++..++... .-+-..| ..+.|.+|.| ++
T Consensus 174 r~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Il 253 (656)
T PLN02318 174 RPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYIL 253 (656)
T ss_pred HhhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEe
Confidence 3566799999965 455444443 344 445544343332 2122233 2457888877 11
Q ss_pred ---HHHHHHHHHHHHHhc
Q psy10228 198 ---PEDIYQKVKEVIQEQ 212 (225)
Q Consensus 198 ---leea~~~lk~iI~~~ 212 (225)
.+-.++.++..+.+.
T Consensus 254 k~~~~~~~~~i~~~L~~~ 271 (656)
T PLN02318 254 KSSRSVTVEQIKAVLSED 271 (656)
T ss_pred cCCccccHHHHHHHhhhc
Confidence 255667777777654
No 143
>KOG1969|consensus
Probab=93.92 E-value=0.05 Score=54.52 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=58.2
Q ss_pred CccEEEEccCCCCCC---------------------------------------Ccc---cCCC--CCCCCCCcceEEec
Q psy10228 50 QEPFMLCYTQDDPTT---------------------------------------EDT---TRAR--REYEVDGRDYHFVS 85 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~---------------------------------------s~T---TRp~--R~~E~dG~dY~FV~ 85 (225)
+++.+|+||+|.||| +.+ +||. =-+|+||-.--||
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~V- 404 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAV- 404 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHH-
Confidence 678999999999998 444 5554 3378888663344
Q ss_pred CHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEE-EccHHHHHHHHhhccCCeEEEEecCCHHHHH
Q psy10228 86 SREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCIL-DVSGNAIKRLQVASLYPVAIFIKPKSVESIM 160 (225)
Q Consensus 86 s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~il-dv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~ 160 (225)
+.+..++.+..=.++|.-+++- |-.+..=-..+-.--+||. |+-..+++.|+ -+.-+|++.||+...|-
T Consensus 405 --dvilslv~a~~k~~~Gkq~~~~-~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr---~~A~ii~f~~p~~s~Lv 474 (877)
T KOG1969|consen 405 --DVILSLVKATNKQATGKQAKKD-KKRKKKRSKLLTRPIICICNDLYAPALRPLR---PFAEIIAFVPPSQSRLV 474 (877)
T ss_pred --HHHHHHHHhhcchhhcCcccch-hhhhhhccccccCCEEEEecCccchhhhhcc---cceEEEEecCCChhHHH
Confidence 5677777655554554444332 2111110011111225664 34445555553 34556777788766654
No 144
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.92 E-value=0.021 Score=47.14 Aligned_cols=14 Identities=7% Similarity=-0.092 Sum_probs=13.3
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
+.++|+|+||+|||
T Consensus 36 k~~vl~G~SGvGKS 49 (161)
T PF03193_consen 36 KTSVLLGQSGVGKS 49 (161)
T ss_dssp SEEEEECSTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 68999999999999
No 145
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=93.90 E-value=1.3 Score=39.81 Aligned_cols=72 Identities=13% Similarity=0.201 Sum_probs=37.9
Q ss_pred HHHHHhhccCCeEEEEecCCHHHHHH--HhccC---C-----HHHHHHHHHHHHHHHHhhCCCCcEEEECC--CHHHHHH
Q psy10228 136 IKRLQVASLYPVAIFIKPKSVESIME--MNKRM---T-----EEQAKKMYDRSMKMEQEFGEFFTAVVQGD--MPEDIYQ 203 (225)
Q Consensus 136 vk~L~~~~~~Pi~IFI~pps~~~L~~--L~~R~---s-----eeei~~rl~~a~k~E~~~~~~fd~vI~Nd--dleea~~ 203 (225)
+..|+..+....+||+.+.+-.-+++ .-+|. . .+.|+ .++ ++-.......|.||... +..+.-.
T Consensus 73 ~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~--~Er--~~L~~lr~~Ad~vIDTs~l~~~~Lr~ 148 (284)
T PF03668_consen 73 LDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIE--KER--ELLEPLRERADLVIDTSNLSVHQLRE 148 (284)
T ss_pred HHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHH--HHH--HHHHHHHHhCCEEEECCCCCHHHHHH
Confidence 34445456667899999976333333 22232 1 12221 111 11112346789999865 4666666
Q ss_pred HHHHHHHh
Q psy10228 204 KVKEVIQE 211 (225)
Q Consensus 204 ~lk~iI~~ 211 (225)
.|.+.+..
T Consensus 149 ~i~~~~~~ 156 (284)
T PF03668_consen 149 RIRERFGG 156 (284)
T ss_pred HHHHHhcc
Confidence 66666553
No 146
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.89 E-value=0.047 Score=46.17 Aligned_cols=44 Identities=9% Similarity=0.071 Sum_probs=30.3
Q ss_pred CccEEEEccCCCCCC-----CcccCCCCCCCC--CCcceEEecCHHHHHHhh
Q psy10228 50 QEPFMLCYTQDDPTT-----EDTTRARREYEV--DGRDYHFVSSREQMEKDI 94 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~-----s~TTRp~R~~E~--dG~dY~FV~s~eef~~~i 94 (225)
++.|.|+|||||||+ -+.-=+|-.|++ .|++|.=. +.+.|.+.+
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~-~pea~Rq~V 79 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL-KPEAYRQQV 79 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccccc-ChHHHHHHH
Confidence 568999999999999 222223334443 57777777 788887765
No 147
>PRK06620 hypothetical protein; Validated
Probab=93.76 E-value=0.5 Score=40.39 Aligned_cols=14 Identities=7% Similarity=-0.014 Sum_probs=13.0
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.+++|.||+|+|||
T Consensus 45 ~~l~l~Gp~G~GKT 58 (214)
T PRK06620 45 FTLLIKGPSSSGKT 58 (214)
T ss_pred ceEEEECCCCCCHH
Confidence 56999999999999
No 148
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.71 E-value=0.049 Score=47.39 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=26.9
Q ss_pred CCCccEEEEccCCCCCC------CcccCCCCCCC--CCCcceEEecCHHH
Q psy10228 48 SDQEPFMLCYTQDDPTT------EDTTRARREYE--VDGRDYHFVSSREQ 89 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~------s~TTRp~R~~E--~dG~dY~FV~s~ee 89 (225)
..++++.|+|||||||| ..--+| -.|+ ++|.|..-. +..+
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~p-t~G~v~i~g~d~~~l-~~~~ 76 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKP-TSGEVLINGKDLTKL-SEKE 76 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC-CCceEEECCEEcCcC-CHHH
Confidence 44679999999999999 333333 3343 788776665 4443
No 149
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.70 E-value=0.98 Score=44.84 Aligned_cols=121 Identities=14% Similarity=0.151 Sum_probs=62.6
Q ss_pred cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228 52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA 121 (225)
Q Consensus 52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~ 121 (225)
.++++||.|+||+ -|...... .|.+-.-+ ..-.-=..|..|.+..+-+.++- ..+.++.|++++
T Consensus 40 a~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~----~~~~~~pC-g~C~~C~~i~~g~h~D~~eldaa-s~~~Vd~iReli 113 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRILAKSLNCQGPDGQ----GGITATPC-GVCQACRDIDSGRFVDYTELDAA-SNRGVDEVQQLL 113 (618)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcccc----cCCCCCCC-CccHHHHHHHcCCCCceeecCcc-cccCHHHHHHHH
Confidence 5799999999999 22222111 11100000 00112224456777776666542 235678888888
Q ss_pred Hc---------CCeEEEE----ccHHHHHHHHh-hccCC---eEEEEecCCHHHHHHHhcc--------CCHHHHHHHHH
Q psy10228 122 EK---------GKHCILD----VSGNAIKRLQV-ASLYP---VAIFIKPKSVESIMEMNKR--------MTEEQAKKMYD 176 (225)
Q Consensus 122 ~~---------gk~~ild----v~~~gvk~L~~-~~~~P---i~IFI~pps~~~L~~L~~R--------~seeei~~rl~ 176 (225)
+. .|++|+| ++..+...|.+ .+-.| +.||+.-.....+..++.| ++++++.+.+.
T Consensus 114 ~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~ 193 (618)
T PRK14951 114 EQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLT 193 (618)
T ss_pred HHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHH
Confidence 75 5678887 45566655544 23333 3444432111223234433 36777776666
Q ss_pred HH
Q psy10228 177 RS 178 (225)
Q Consensus 177 ~a 178 (225)
+.
T Consensus 194 ~i 195 (618)
T PRK14951 194 QV 195 (618)
T ss_pred HH
Confidence 53
No 150
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.66 E-value=0.73 Score=46.91 Aligned_cols=116 Identities=15% Similarity=0.173 Sum_probs=58.6
Q ss_pred cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228 52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA 121 (225)
Q Consensus 52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~ 121 (225)
.++|+||.|+||+ -|.+.. .++--|+ + .--..|.+|.|.++-+++.- -.+.++.|++++
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLnCe~~~--~~~PCG~---C-----~sCr~I~~G~h~DviEIDAa-s~rgVDdIReLI 108 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALNCETGV--TSQPCGV---C-----RACREIDEGRFVDYVEMDAA-SNRGVDEMAALL 108 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCccCC--CCCCCcc---c-----HHHHHHhcCCCceEEEeccc-ccccHHHHHHHH
Confidence 5789999999999 222111 0111111 1 01123455666666555432 235677777777
Q ss_pred Hc---------CCeEEEE----ccHHHHHHHHh-hccCC-eEEEEec-CCHHHHH-HHhc--------cCCHHHHHHHHH
Q psy10228 122 EK---------GKHCILD----VSGNAIKRLQV-ASLYP-VAIFIKP-KSVESIM-EMNK--------RMTEEQAKKMYD 176 (225)
Q Consensus 122 ~~---------gk~~ild----v~~~gvk~L~~-~~~~P-i~IFI~p-ps~~~L~-~L~~--------R~seeei~~rl~ 176 (225)
+. .|++||| ++..+...|.+ .+-.| .++||.. .+...|- .++. +++.+++.++|.
T Consensus 109 e~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~ 188 (830)
T PRK07003 109 ERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLE 188 (830)
T ss_pred HHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHH
Confidence 63 4677776 34444444433 33333 3333332 2333333 2443 336777777776
Q ss_pred HH
Q psy10228 177 RS 178 (225)
Q Consensus 177 ~a 178 (225)
+.
T Consensus 189 ~I 190 (830)
T PRK07003 189 RI 190 (830)
T ss_pred HH
Confidence 64
No 151
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.50 E-value=0.93 Score=43.90 Aligned_cols=147 Identities=15% Similarity=0.153 Sum_probs=74.4
Q ss_pred cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228 52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA 121 (225)
Q Consensus 52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~ 121 (225)
.++++||.|+||+ -|.+.+ ..+-=|.- ..-..|..|.+..+-+.++-. .+.+++|++++
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~--~~~pCg~C--------~~C~~i~~g~~~d~~eidaas-~~~v~~iR~l~ 108 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILAKCLNCEKGV--SANPCNDC--------ENCREIDEGRFPDLFEVDAAS-RTKVEDTRELL 108 (509)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCCCC--CcccCCCC--------HHHHHHhcCCCceEEEEcccc-cCCHHHHHHHH
Confidence 5789999999999 232211 11111111 122345667766666665421 36777788877
Q ss_pred Hc---------CCeEEEE----ccHHHHHHHHh-hccCC-e--EEEEecCCHHHHH-HHhcc--------CCHHHHHHHH
Q psy10228 122 EK---------GKHCILD----VSGNAIKRLQV-ASLYP-V--AIFIKPKSVESIM-EMNKR--------MTEEQAKKMY 175 (225)
Q Consensus 122 ~~---------gk~~ild----v~~~gvk~L~~-~~~~P-i--~IFI~pps~~~L~-~L~~R--------~seeei~~rl 175 (225)
+. .|++|+| ++..+...|.+ -+-.| . .||+.. +...+- .++.| ++++++.+++
T Consensus 109 ~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt-d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l 187 (509)
T PRK14958 109 DNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT-DHHKLPVTVLSRCLQFHLAQLPPLQIAAHC 187 (509)
T ss_pred HHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC-ChHhchHHHHHHhhhhhcCCCCHHHHHHHH
Confidence 52 4577776 34555554443 23343 3 344432 222222 24433 4677777766
Q ss_pred HHHHHHHH-hhCC-CCcEE--EECCCHHHHHHHHHHHHH
Q psy10228 176 DRSMKMEQ-EFGE-FFTAV--VQGDMPEDIYQKVKEVIQ 210 (225)
Q Consensus 176 ~~a~k~E~-~~~~-~fd~v--I~Nddleea~~~lk~iI~ 210 (225)
....+.|. .+.+ -.+++ ..+.++-.+.+.|...+.
T Consensus 188 ~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia 226 (509)
T PRK14958 188 QHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIA 226 (509)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 65432221 1100 01122 124577777777766554
No 152
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.20 E-value=0.97 Score=45.34 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=72.2
Q ss_pred ccEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHH
Q psy10228 51 EPFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDV 120 (225)
Q Consensus 51 ~~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v 120 (225)
..++++||.|+||+ -|.+ ++. ++.-| .+ ..-+.+..|.++..-++++... +.++.|+++
T Consensus 38 HAyLF~GPpGvGKTTlAriLAK~LnC~~-~~~-~~pCg----~C----~sC~~I~~g~hpDviEIDAAs~-~~VddIRel 106 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARILAKCLNCET-GVT-STPCE----VC----ATCKAVNEGRFIDLIEIDAASR-TKVEDTREL 106 (702)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCc-CCC-CCCCc----cC----HHHHHHhcCCCCceEEeccccc-CCHHHHHHH
Confidence 36799999999999 1111 110 01001 11 1223445566665555554322 457777777
Q ss_pred HH---------cCCeEEEE----ccHHHHHHHHh-hccCC---eEEEEecCCHHHHH-HHhc--------cCCHHHHHHH
Q psy10228 121 AE---------KGKHCILD----VSGNAIKRLQV-ASLYP---VAIFIKPKSVESIM-EMNK--------RMTEEQAKKM 174 (225)
Q Consensus 121 ~~---------~gk~~ild----v~~~gvk~L~~-~~~~P---i~IFI~pps~~~L~-~L~~--------R~seeei~~r 174 (225)
++ +.|++|+| ++..+...|.+ .+..| +.||+. .+...+. .++. +++.+++.++
T Consensus 107 i~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaT-td~~kIp~TIlSRCq~feFkpLs~eEI~k~ 185 (702)
T PRK14960 107 LDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFAT-TDPQKLPITVISRCLQFTLRPLAVDEITKH 185 (702)
T ss_pred HHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEE-CChHhhhHHHHHhhheeeccCCCHHHHHHH
Confidence 64 24677776 35555555543 23333 344443 2322222 2333 3467788777
Q ss_pred HHHHHHHHH-hhCC-CCcEE--EECCCHHHHHHHHHHHHH
Q psy10228 175 YDRSMKMEQ-EFGE-FFTAV--VQGDMPEDIYQKVKEVIQ 210 (225)
Q Consensus 175 l~~a~k~E~-~~~~-~fd~v--I~Nddleea~~~lk~iI~ 210 (225)
+.+..+.|. .+.. -..++ ..+.++-.+.+.+..++.
T Consensus 186 L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIa 225 (702)
T PRK14960 186 LGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 766533221 0100 01111 124567777777665553
No 153
>KOG3347|consensus
Probab=93.20 E-value=0.78 Score=38.01 Aligned_cols=140 Identities=13% Similarity=0.298 Sum_probs=74.1
Q ss_pred cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEE-EEE-eCCcce--eecHHHHHHHHHcCCeE
Q psy10228 52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIE-AGQ-YNDNLY--GTSVASVRDVAEKGKHC 127 (225)
Q Consensus 52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE-~~~-~~gn~Y--GTs~~sV~~v~~~gk~~ 127 (225)
-|+|+|.+|+|||+.-.|-. |.-|-.|.-+ |+ .++.+.|.+ |.+ |.-+.- -.-++.++..+.+|- +
T Consensus 9 NILvtGTPG~GKstl~~~la---e~~~~~~i~i-sd-----~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg-~ 78 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLA---EKTGLEYIEI-SD-----LVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGG-N 78 (176)
T ss_pred CEEEeCCCCCCchhHHHHHH---HHhCCceEeh-hh-----HHhhhcchhcccccccCccccHHHHHHHHHHHHhcCC-c
Confidence 38999999999995544433 6677777777 53 233344432 221 222111 123455666666664 5
Q ss_pred EEEccHHHHHHHHhhccCC-----eEEEEecCCHHHHHH-HhccC-CHHHHHHHHHH-----HH-HHHHhhCCCCcEEEE
Q psy10228 128 ILDVSGNAIKRLQVASLYP-----VAIFIKPKSVESIME-MNKRM-TEEQAKKMYDR-----SM-KMEQEFGEFFTAVVQ 194 (225)
Q Consensus 128 ildv~~~gvk~L~~~~~~P-----i~IFI~pps~~~L~~-L~~R~-seeei~~rl~~-----a~-k~E~~~~~~fd~vI~ 194 (225)
|+|-.+. +++| +++-+..|. .+|-. |..|+ +++.|+.-++- .. +..-.|.+..-+-+.
T Consensus 79 IVDyHgC--------d~FperwfdlVvVLr~~~-s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~eSy~~~iV~eL~ 149 (176)
T KOG3347|consen 79 IVDYHGC--------DFFPERWFDLVVVLRTPN-SVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARESYSPKIVVELQ 149 (176)
T ss_pred EEeeccc--------CccchhheeEEEEEecCc-hHHHHHHHHcCCCHHHHhhhcchHHHHHHHHHHHHHcCCcceeecC
Confidence 6665443 4555 444455554 67765 88888 55544432221 11 011233333111222
Q ss_pred CCCHHHHHHHHHHHHH
Q psy10228 195 GDMPEDIYQKVKEVIQ 210 (225)
Q Consensus 195 Nddleea~~~lk~iI~ 210 (225)
.+..+++.+.|..++.
T Consensus 150 s~~~Eem~~ni~ri~~ 165 (176)
T KOG3347|consen 150 SETKEEMESNISRILN 165 (176)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4456888888777764
No 154
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=93.18 E-value=0.049 Score=44.47 Aligned_cols=66 Identities=12% Similarity=0.059 Sum_probs=43.9
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEE
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCIL 129 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~il 129 (225)
..=++|+||||+|||+++-.-.+.| +.|+ + ++.+.-...+|.++|++.+.++..++---.-|+
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~g------~~lv-a----------DD~v~v~~~~~~l~~~~p~~l~g~iEvRGlGiv 76 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKRG------HRLV-A----------DDRVVVKREGGRLVGRAPEALKGLIEIRGLGII 76 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC------CeEE-E----------CCEEEEEEECCEEEEeChHHhCCCcEecCceEE
Confidence 3468999999999996655433322 4566 3 235555556788999998877666655445566
Q ss_pred Ecc
Q psy10228 130 DVS 132 (225)
Q Consensus 130 dv~ 132 (225)
++.
T Consensus 77 ~v~ 79 (149)
T cd01918 77 DVP 79 (149)
T ss_pred Ech
Confidence 654
No 155
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.17 E-value=0.47 Score=40.44 Aligned_cols=83 Identities=18% Similarity=0.283 Sum_probs=57.0
Q ss_pred eEEEEccHHHHHHHHhhc---cCCeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHH
Q psy10228 126 HCILDVSGNAIKRLQVAS---LYPVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPE 199 (225)
Q Consensus 126 ~~ildv~~~gvk~L~~~~---~~Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dle 199 (225)
.|++|+.. |...+ .+..+|.|.+|..-.++++.+|. +++++..++..-.-.+.. ...-|+|+.|+ +++
T Consensus 107 ~~~~eipl-----L~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~~~~~~Q~~~~ek-~~~ad~vi~n~~~i~ 180 (201)
T COG0237 107 YVVLEIPL-----LFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDAEARLASQRDLEEK-LALADVVIDNDGSIE 180 (201)
T ss_pred ceEEEchH-----HHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHhcCCHHHH-HhhcCChhhcCCCHH
Confidence 67777664 33332 24578888887767777877775 667777766554322222 46789999988 799
Q ss_pred HHHHHHHHHHHhccC
Q psy10228 200 DIYQKVKEVIQEQSG 214 (225)
Q Consensus 200 ea~~~lk~iI~~~~~ 214 (225)
.++.++..++.....
T Consensus 181 ~l~~~i~~~~~~~~~ 195 (201)
T COG0237 181 NLLEQIEKLLKELLG 195 (201)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998876544
No 156
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.17 E-value=0.054 Score=46.33 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=25.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHHhccCCceeeeC
Q psy10228 188 FFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPS 221 (225)
Q Consensus 188 ~fd~vI~Nddleea~~~lk~iI~~~~~~~~WVp~ 221 (225)
.-+.+++.++++++......++.-..+...|.-.
T Consensus 180 ~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 180 KMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred CCEEEEEeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 4577778888888888777777777777777543
No 157
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.03 E-value=0.037 Score=49.79 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=28.3
Q ss_pred cccchhhhhhccccchhhhhccccceeecccccccccCCCCCCCCCCccEEEEccCCCCCC
Q psy10228 4 HDMYRPMSRLRNLNTSTLERKKKNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~ 64 (225)
.|+|-|||+|=+|--.....+.... ++ |.... ......+|-|+||+|||||
T Consensus 26 ~~iy~pl~~~~~~~~~~~~~~~~~~---~~--f~~~~-----~~~~p~IIGIaG~~GSGKS 76 (290)
T TIGR00554 26 ATIYLPLSRLLNFYISSNLRRQAVL---EQ--FLGTN-----GAKIPYIISIAGSVAVGKS 76 (290)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH---HH--HHhcc-----cCCCCEEEEEECCCCCCHH
Confidence 4788899998888543332222111 01 11111 1122236679999999999
No 158
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.96 E-value=0.05 Score=47.39 Aligned_cols=17 Identities=6% Similarity=0.038 Sum_probs=15.0
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.++|+||||||||
T Consensus 26 ~~Gevv~iiGpSGSGKS 42 (240)
T COG1126 26 EKGEVVVIIGPSGSGKS 42 (240)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34679999999999999
No 159
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=92.92 E-value=1.5 Score=39.29 Aligned_cols=77 Identities=10% Similarity=0.232 Sum_probs=42.8
Q ss_pred HHHHHhh-ccCCeEEEEecCCHHHHHH--HhccCCHHHHHHHHHHHHHHHHhh----CCCCcEEEECC--CHHHHHHHHH
Q psy10228 136 IKRLQVA-SLYPVAIFIKPKSVESIME--MNKRMTEEQAKKMYDRSMKMEQEF----GEFFTAVVQGD--MPEDIYQKVK 206 (225)
Q Consensus 136 vk~L~~~-~~~Pi~IFI~pps~~~L~~--L~~R~seeei~~rl~~a~k~E~~~----~~~fd~vI~Nd--dleea~~~lk 206 (225)
+..|+.. .+.|.++|+.+.+-.-+++ .-+|..+=....++..+.+.|.++ .+..|.||... +.-+.-+.|+
T Consensus 73 l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~vIDTs~ls~~~Lr~~i~ 152 (286)
T COG1660 73 LDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADLVIDTSELSVHELRERIR 152 (286)
T ss_pred HHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhhhEeecccCCHHHHHHHHH
Confidence 3445544 3458899999976443333 333432211222355555556554 35677888765 4566677777
Q ss_pred HHHHhc
Q psy10228 207 EVIQEQ 212 (225)
Q Consensus 207 ~iI~~~ 212 (225)
..+...
T Consensus 153 ~~f~~~ 158 (286)
T COG1660 153 TRFLGK 158 (286)
T ss_pred HHHccC
Confidence 766643
No 160
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=92.86 E-value=0.35 Score=39.93 Aligned_cols=87 Identities=20% Similarity=0.336 Sum_probs=44.6
Q ss_pred CCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHH
Q psy10228 106 NDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQ 183 (225)
Q Consensus 106 ~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~ 183 (225)
...++-...+.|.+.+++| .||+.--. |---|+.. -..+.|||..|....++++.++ ++++++.+.+....+...
T Consensus 78 ~~~~~~~~~~~i~~la~~~-~~Vi~GR~-a~~il~~~-~~~l~V~i~A~~~~Rv~ri~~~~~~s~~~A~~~i~~~D~~R~ 154 (179)
T PF13189_consen 78 DDKIFRAQSEIIRELAAKG-NCVIVGRC-ANYILRDI-PNVLHVFIYAPLEFRVERIMEREGISEEEAEKLIKKEDKRRR 154 (179)
T ss_dssp --HHHHHHHHHHHHHHH----EEEESTT-HHHHTTT--TTEEEEEEEE-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccC-CEEEEecC-HhhhhCCC-CCeEEEEEECCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3445555566778887777 45544322 21124321 1348899999876667774433 477888777776543322
Q ss_pred hh-----------CCCCcEEEEC
Q psy10228 184 EF-----------GEFFTAVVQG 195 (225)
Q Consensus 184 ~~-----------~~~fd~vI~N 195 (225)
.| ...||.+|..
T Consensus 155 ~~~~~~~~~~~~d~~~YDLvint 177 (179)
T PF13189_consen 155 AYYKYYTGIDWGDPSNYDLVINT 177 (179)
T ss_dssp HHHHHH-SS-TTBGGG-SEEEEE
T ss_pred HHHHHHhCCCCCCchhceEEEeC
Confidence 22 2467777653
No 161
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.84 E-value=0.78 Score=40.03 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=31.1
Q ss_pred CCeEEEEccHHHHHHHHhh------ccC-C-eEEEEecCCHHHHHHH-hccC---CHHHHHHHHHHH
Q psy10228 124 GKHCILDVSGNAIKRLQVA------SLY-P-VAIFIKPKSVESIMEM-NKRM---TEEQAKKMYDRS 178 (225)
Q Consensus 124 gk~~ildv~~~gvk~L~~~------~~~-P-i~IFI~pps~~~L~~L-~~R~---seeei~~rl~~a 178 (225)
+..+|+| +.+-++.++.. ..+ + .+|++..| .+.+.+. +.|+ .+|-+++++++.
T Consensus 74 n~~VIvD-dtNYyksmRrqL~ceak~~~tt~ciIyl~~p-lDtc~rrN~ergepip~Evl~qly~Rf 138 (261)
T COG4088 74 NYLVIVD-DTNYYKSMRRQLACEAKERKTTWCIIYLRTP-LDTCLRRNRERGEPIPEEVLRQLYDRF 138 (261)
T ss_pred ceEEEEe-cccHHHHHHHHHHHHHHhcCCceEEEEEccC-HHHHHHhhccCCCCCCHHHHHHHHHhh
Confidence 6788877 44444444321 222 3 67898876 5666653 3444 356777777776
No 162
>PHA00729 NTP-binding motif containing protein
Probab=92.80 E-value=0.095 Score=45.61 Aligned_cols=43 Identities=14% Similarity=0.034 Sum_probs=25.6
Q ss_pred cEEEEccCCCCCCCcccCCCC-------------CCCCCCcceEEecCHHHHHHhhh
Q psy10228 52 PFMLCYTQDDPTTEDTTRARR-------------EYEVDGRDYHFVSSREQMEKDIQ 95 (225)
Q Consensus 52 ~ivl~GpsgsGK~s~TTRp~R-------------~~E~dG~dY~FV~s~eef~~~i~ 95 (225)
-|+|+|++|+|||+...+-.+ .+--+|...+|+ +.+++...+.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fi-d~~~Ll~~L~ 74 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFF-ELPDALEKIQ 74 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEE-EHHHHHHHHH
Confidence 589999999999921111100 001234556777 7777776664
No 163
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.74 E-value=0.73 Score=41.71 Aligned_cols=120 Identities=16% Similarity=0.288 Sum_probs=73.7
Q ss_pred cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceee--cHHHHHHHHHcCCeEEE
Q psy10228 52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGT--SVASVRDVAEKGKHCIL 129 (225)
Q Consensus 52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGT--s~~sV~~v~~~gk~~il 129 (225)
++|++|++||||+ + .|..|| +| -+-|.||. +++.=-+.+-+++-||+
T Consensus 129 LviiVGaTGSGKS--------------------T---tmAaMi------~y--RN~~s~gHIiTIEDPIEfih~h~~CIv 177 (375)
T COG5008 129 LVIIVGATGSGKS--------------------T---TMAAMI------GY--RNKNSTGHIITIEDPIEFIHKHKRCIV 177 (375)
T ss_pred eEEEECCCCCCch--------------------h---hHHHHh------cc--cccCCCCceEEecChHHHHhcccceeE
Confidence 7899999999998 2 344443 12 24466662 33322233345677887
Q ss_pred E-----ccHHHHH-HHHhh-ccCCeEEEEec-CCHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCcEEEECCCHHHH
Q psy10228 130 D-----VSGNAIK-RLQVA-SLYPVAIFIKP-KSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGDMPEDI 201 (225)
Q Consensus 130 d-----v~~~gvk-~L~~~-~~~Pi~IFI~p-ps~~~L~~L~~R~seeei~~rl~~a~k~E~~~~~~fd~vI~Nddleea 201 (225)
- +|...+. +|+.. ...|-+|.|-- .| ++.++.|..+ -+-+|+|=+++.-++.++|
T Consensus 178 TQREvGvDTesw~~AlkNtlRQapDvI~IGEvRs----------------retMeyAi~f-AeTGHLcmaTLHAN~anQa 240 (375)
T COG5008 178 TQREVGVDTESWEVALKNTLRQAPDVILIGEVRS----------------RETMEYAIQF-AETGHLCMATLHANNANQA 240 (375)
T ss_pred EeeeeccchHHHHHHHHHHHhcCCCeEEEeeccc----------------HhHHHHHHHH-HhcCceEEEEeccCCchHH
Confidence 3 3333322 34442 34677888742 22 2235555432 2447888899988888999
Q ss_pred HHHHHHHHHhccCCceee
Q psy10228 202 YQKVKEVIQEQSGPSIWV 219 (225)
Q Consensus 202 ~~~lk~iI~~~~~~~~WV 219 (225)
++++..+.-+++....|.
T Consensus 241 leRIinffP~Err~Qll~ 258 (375)
T COG5008 241 LERIINFFPEERREQLLI 258 (375)
T ss_pred HHHHHhhCcHHHhhhhHH
Confidence 999988887777777765
No 164
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.71 E-value=1.1 Score=41.16 Aligned_cols=13 Identities=23% Similarity=0.232 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++|.||+|+||+
T Consensus 40 ~~L~~Gp~G~GKT 52 (363)
T PRK14961 40 AWLLSGTRGVGKT 52 (363)
T ss_pred EEEEecCCCCCHH
Confidence 5789999999999
No 165
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=92.64 E-value=0.055 Score=49.79 Aligned_cols=19 Identities=21% Similarity=0.025 Sum_probs=16.7
Q ss_pred CCCCCccEEEEccCCCCCC
Q psy10228 46 DGSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 46 ~~~~~~~ivl~GpsgsGK~ 64 (225)
+-.++++++|+||||||||
T Consensus 25 ~i~~Gef~vllGPSGcGKS 43 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKS 43 (338)
T ss_pred EEcCCCEEEEECCCCCCHH
Confidence 4556789999999999999
No 166
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.62 E-value=0.043 Score=41.52 Aligned_cols=13 Identities=0% Similarity=0.031 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.|+|+||||||||
T Consensus 1 vI~I~G~~gsGKS 13 (121)
T PF13207_consen 1 VIIISGPPGSGKS 13 (121)
T ss_dssp EEEEEESTTSSHH
T ss_pred CEEEECCCCCCHH
Confidence 4899999999999
No 167
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.56 E-value=0.98 Score=44.20 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=67.6
Q ss_pred cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228 52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA 121 (225)
Q Consensus 52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~ 121 (225)
.+++.||.|+||+ -+.+ +..++--|. + .--..+.++.|....++++.. -+.++.+++++
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~L~c~~--~~~~~pCg~---C-----~sC~~i~~~~~~dlieidaas-~~gvd~ir~ii 108 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKCLNCKT--GVTAEPCNK---C-----ENCVAINNNSFIDLIEIDAAS-RTGVEETKEIL 108 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCC--CCCCCCCcc---c-----HHHHHHhcCCCCceEEeeccc-ccCHHHHHHHH
Confidence 4789999999999 2211 111111121 1 111234456565555554311 14456666654
Q ss_pred H---------cCCeEEEE----ccHHHHHHHHh-hccCC---eEEEEecCCHHHHH-HHhccC--------CHHHHHHHH
Q psy10228 122 E---------KGKHCILD----VSGNAIKRLQV-ASLYP---VAIFIKPKSVESIM-EMNKRM--------TEEQAKKMY 175 (225)
Q Consensus 122 ~---------~gk~~ild----v~~~gvk~L~~-~~~~P---i~IFI~pps~~~L~-~L~~R~--------seeei~~rl 175 (225)
+ ..+++|+| ++..+...|.. .+-.| +.||+.. +...+- .++.|. +++++.+.+
T Consensus 109 ~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt-d~~kil~tI~SRc~~~~f~~Ls~~eI~~~L 187 (546)
T PRK14957 109 DNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT-DYHKIPVTILSRCIQLHLKHISQADIKDQL 187 (546)
T ss_pred HHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC-ChhhhhhhHHHheeeEEeCCCCHHHHHHHH
Confidence 3 23455565 24444444443 23333 3455553 333333 355443 577777777
Q ss_pred HHHHHHHH-hhCC-CCcEE--EECCCHHHHHHHHHHHH
Q psy10228 176 DRSMKMEQ-EFGE-FFTAV--VQGDMPEDIYQKVKEVI 209 (225)
Q Consensus 176 ~~a~k~E~-~~~~-~fd~v--I~Nddleea~~~lk~iI 209 (225)
.+..+.|. .+.. -.+++ ..+.|+..+++.|..++
T Consensus 188 ~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 188 KIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 66432221 0000 01111 12456777766666554
No 168
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.55 E-value=1.9 Score=36.16 Aligned_cols=132 Identities=17% Similarity=0.224 Sum_probs=73.4
Q ss_pred ccEEEEccCCCCCCC--cccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcce--e-ecHHHHHHHHHcCC
Q psy10228 51 EPFMLCYTQDDPTTE--DTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY--G-TSVASVRDVAEKGK 125 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s--~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~Y--G-Ts~~sV~~v~~~gk 125 (225)
++.|+.||.|||||+ .-+=++ ..+ ...|| +.+++...|-.-.== -.-+ | .-..-++-.+..|+
T Consensus 3 ~l~IvaG~NGsGKstv~~~~~~~----~~~-~~~~V-N~D~iA~~i~p~~p~------~~~i~A~r~ai~~i~~~I~~~~ 70 (187)
T COG4185 3 RLDIVAGPNGSGKSTVYASTLAP----LLP-GIVFV-NADEIAAQISPDNPT------SAAIQAARVAIDRIARLIDLGR 70 (187)
T ss_pred eEEEEecCCCCCceeeeeccchh----hcC-CeEEE-CHHHHhhhcCCCCch------HHHHHHHHHHHHHHHHHHHcCC
Confidence 467889999999992 222222 333 45789 889988776322100 0001 0 11222334456677
Q ss_pred eEEEEc--cHHHH-HHHHh---hccCCeEEEEecCCHHH-HHHHhcc----C---CHHHHHHHHHHHHHHHHhhCCCCcE
Q psy10228 126 HCILDV--SGNAI-KRLQV---ASLYPVAIFIKPKSVES-IMEMNKR----M---TEEQAKKMYDRSMKMEQEFGEFFTA 191 (225)
Q Consensus 126 ~~ildv--~~~gv-k~L~~---~~~~Pi~IFI~pps~~~-L~~L~~R----~---seeei~~rl~~a~k~E~~~~~~fd~ 191 (225)
...++. ++..+ +.++. .+++-...|+..++.+- +++.+.| + .|+.|++|+.+..++=..+.+.+|-
T Consensus 71 ~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~rsle~l~~~l~l~dr 150 (187)
T COG4185 71 PFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRRSLELLAQALTLADR 150 (187)
T ss_pred CcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhcce
Confidence 766653 44443 22333 35555556777777642 3344433 2 3788999999975433456688885
Q ss_pred EEE
Q psy10228 192 VVQ 194 (225)
Q Consensus 192 vI~ 194 (225)
..+
T Consensus 151 ~~I 153 (187)
T COG4185 151 ATI 153 (187)
T ss_pred eEE
Confidence 433
No 169
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.43 E-value=1.5 Score=41.68 Aligned_cols=37 Identities=14% Similarity=0.003 Sum_probs=24.7
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHHhccCCceeeeCCCC
Q psy10228 188 FFTAVVQGD-MPEDIYQKVKEVIQEQSGPSIWVPSKDP 224 (225)
Q Consensus 188 ~fd~vI~Nd-dleea~~~lk~iI~~~~~~~~WVp~~~~ 224 (225)
..+.+|.|- |-+.-...+..+.....-|..|+...++
T Consensus 240 ~i~giIlTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~ 277 (428)
T TIGR00959 240 GLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEK 277 (428)
T ss_pred CCCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCC
Confidence 356777664 4445556677777777777777777654
No 170
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.37 E-value=1.3 Score=37.16 Aligned_cols=13 Identities=8% Similarity=-0.046 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|.|+|++|+|||
T Consensus 7 ki~ITG~PGvGKt 19 (179)
T COG1618 7 KIFITGRPGVGKT 19 (179)
T ss_pred EEEEeCCCCccHH
Confidence 4899999999999
No 171
>PLN02199 shikimate kinase
Probab=92.33 E-value=1.1 Score=40.75 Aligned_cols=103 Identities=10% Similarity=0.185 Sum_probs=49.4
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCc-cee-ecHHHHHHHHHcCCeE
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDN-LYG-TSVASVRDVAEKGKHC 127 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn-~YG-Ts~~sV~~v~~~gk~~ 127 (225)
...|+|+|..|||||+.--.-. .--.|.|+++...+++....-..-+.....|. .|- .=.+.+++.... ..|
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA-----~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~-~~~ 175 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMS-----KVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSR-YQV 175 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHH-----HHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhc-CCE
Confidence 4579999999999992211110 00246688444445553221111111111221 111 222334444333 356
Q ss_pred EEEccH------HHHHHHHhhccCCeEEEEecCCHHHHHH-Hh
Q psy10228 128 ILDVSG------NAIKRLQVASLYPVAIFIKPKSVESIME-MN 163 (225)
Q Consensus 128 ildv~~------~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~ 163 (225)
|+...+ .....|+ ..++|||..| .+.|.+ +.
T Consensus 176 VIStGGG~V~~~~n~~~L~----~G~vV~Ldas-~E~l~~RL~ 213 (303)
T PLN02199 176 VVSTGGGAVIRPINWKYMH----KGISIWLDVP-LEALAHRIA 213 (303)
T ss_pred EEECCCcccCCHHHHHHHh----CCeEEEEECC-HHHHHHHHh
Confidence 665443 2222232 3578999986 455554 65
No 172
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=92.31 E-value=0.27 Score=44.77 Aligned_cols=15 Identities=0% Similarity=-0.051 Sum_probs=13.5
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...|+|+|+||+|||
T Consensus 162 ~~~~~~~G~~~~gks 176 (325)
T TIGR01526 162 VKTVAILGGESTGKS 176 (325)
T ss_pred CcEEEEECCCCCCHH
Confidence 457999999999999
No 173
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.23 E-value=1.1 Score=44.84 Aligned_cols=121 Identities=14% Similarity=0.119 Sum_probs=60.2
Q ss_pred cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228 52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA 121 (225)
Q Consensus 52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~ 121 (225)
-++|+||.|.||+ -|.... + ..|..-.-+ -.-..-..|..|.|..+-++++-. .+.++.|++++
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC~~p~---~-~~g~~~~PC-G~C~sC~~I~aG~hpDviEIdAas-~~gVDdIReLi 113 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNCTGAD---G-EGGITAQPC-GQCRACTEIDAGRFVDYIEMDAAS-NRGVDEMAQLL 113 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcc---c-cccCCCCCC-cccHHHHHHHcCCCCcceEecccc-cCCHHHHHHHH
Confidence 5799999999999 232111 1 111110000 001223355667766666655421 35677888776
Q ss_pred Hc---------CCeEEEE----ccHHHHHHHHh-hccCC-eEEEEecC-CHHHHHH-Hhc--------cCCHHHHHHHHH
Q psy10228 122 EK---------GKHCILD----VSGNAIKRLQV-ASLYP-VAIFIKPK-SVESIME-MNK--------RMTEEQAKKMYD 176 (225)
Q Consensus 122 ~~---------gk~~ild----v~~~gvk~L~~-~~~~P-i~IFI~pp-s~~~L~~-L~~--------R~seeei~~rl~ 176 (225)
+. .|++|+| ++..+...|-+ .+-.| .++||... +...|.. ++. +++.+++.+++.
T Consensus 114 e~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~ 193 (700)
T PRK12323 114 DKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLD 193 (700)
T ss_pred HHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHH
Confidence 53 3567776 34555555443 33333 33443332 2333322 332 335677776666
Q ss_pred HH
Q psy10228 177 RS 178 (225)
Q Consensus 177 ~a 178 (225)
+.
T Consensus 194 ~I 195 (700)
T PRK12323 194 AI 195 (700)
T ss_pred HH
Confidence 54
No 174
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=92.20 E-value=1.2 Score=41.91 Aligned_cols=156 Identities=8% Similarity=0.039 Sum_probs=73.2
Q ss_pred CCccEEEEccCCCCCCCcccCCCCCCCCCCcce-EEecCHHHHHHhhh-CCcEEEEEEeCCcceeecHHHHHHHHHcCCe
Q psy10228 49 DQEPFMLCYTQDDPTTEDTTRARREYEVDGRDY-HFVSSREQMEKDIQ-NHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY-~FV~s~eef~~~i~-~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~ 126 (225)
..+.|+|+|++|||||+.+..-.+. -|..+ .-. .++-...... .+.-+.|..|..-.+|.....-..+....+.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~---~g~~~v~E~-~R~~~~~~~~~~~~~l~~~D~~~ia~~~~~~~~~~~~~a~~~ 293 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANI---FNTTSAWEY-GREYVFSHLGGDEMALQYSDYDKIALGHAQYIDFAVKYANKV 293 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH---hCCCeeeec-cHHHHHHhhcCCccCCChhhhHHHHhhhHHHHHHHHHhcCCe
Confidence 3468999999999999322111110 01000 011 3343332221 1122223334444566666544455556788
Q ss_pred EEEEccHHHHHH---HH------------hhccCCeEEEEecCCHHHHHH-HhccCCHHHHHHHHHHHHHHHHhh-CCCC
Q psy10228 127 CILDVSGNAIKR---LQ------------VASLYPVAIFIKPKSVESIME-MNKRMTEEQAKKMYDRSMKMEQEF-GEFF 189 (225)
Q Consensus 127 ~ildv~~~gvk~---L~------------~~~~~Pi~IFI~pps~~~L~~-L~~R~seeei~~rl~~a~k~E~~~-~~~f 189 (225)
+++|.+.-.... .. ....|. .+|+.+|+..-+.. ++ -+.+++.+..+....+ ..+ ...+
T Consensus 294 ~f~Dt~~~~t~~y~~~y~g~~~p~l~~~~~~~ryD-lvlll~pd~Pwv~DGlR-~~~D~e~R~~f~~~l~--~~l~~~g~ 369 (399)
T PRK08099 294 AFIDTDFVTTQAFCKKYEGREHPFVQALIDEYRFD-LTILLENNTPWVADGLR-SLGSSVDRKRFQNLLK--EMLKENNI 369 (399)
T ss_pred EEEeCChHHHHHHHHHhCCCCCHHHHHHHHhCCCC-EEEEcCCCCCcccCCcc-cCCCHHHHHHHHHHHH--HHHHHcCC
Confidence 888875422211 11 011122 34554433222211 22 1234445555554432 222 2356
Q ss_pred cEEEEC-CCHHHHHHHHHHHHHhc
Q psy10228 190 TAVVQG-DMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 190 d~vI~N-ddleea~~~lk~iI~~~ 212 (225)
.+++++ .+.++=+.+...+|.+.
T Consensus 370 ~~v~l~~g~~~eR~~~a~~~i~~~ 393 (399)
T PRK08099 370 EYVHVESPDYDKRYLRCVELVDQM 393 (399)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHH
Confidence 688885 67777777666666653
No 175
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.10 E-value=1.3 Score=44.59 Aligned_cols=148 Identities=16% Similarity=0.171 Sum_probs=69.2
Q ss_pred cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228 52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA 121 (225)
Q Consensus 52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~ 121 (225)
-++|+||+|+||+ -|.... .++--|. -..-..+..|.|+.+-++++. -++.++.|++++
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~LnC~~~~--~~~pCg~--------C~sCr~i~~g~~~DvlEidaA-s~~gVd~IRell 108 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLNCENAQ--HGEPCGV--------CQSCTQIDAGRYVDLLEIDAA-SNTGIDNIREVL 108 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCC--CCCCCcc--------cHHHHHHhccCccceEEEecc-ccCCHHHHHHHH
Confidence 5899999999999 222211 0111111 112234555666655555432 246677888877
Q ss_pred Hc---------CCeEEEE----ccHHHHHHHHh-hccCC---eEEEEecCCHHHHHHHh--------ccCCHHHHHHHHH
Q psy10228 122 EK---------GKHCILD----VSGNAIKRLQV-ASLYP---VAIFIKPKSVESIMEMN--------KRMTEEQAKKMYD 176 (225)
Q Consensus 122 ~~---------gk~~ild----v~~~gvk~L~~-~~~~P---i~IFI~pps~~~L~~L~--------~R~seeei~~rl~ 176 (225)
+. .+++|+| ++..+...|.+ .+-.| ++||+.......+..++ ++++.+++.++|.
T Consensus 109 e~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~ 188 (709)
T PRK08691 109 ENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLA 188 (709)
T ss_pred HHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHH
Confidence 52 3566666 23334333332 23232 34554421111111122 2446777777776
Q ss_pred HHHHHHH-hhCC-CCcEEE--ECCCHHHHHHHHHHHHH
Q psy10228 177 RSMKMEQ-EFGE-FFTAVV--QGDMPEDIYQKVKEVIQ 210 (225)
Q Consensus 177 ~a~k~E~-~~~~-~fd~vI--~Nddleea~~~lk~iI~ 210 (225)
+..+.|. .+.+ -...++ .+.++-.+.+.|..++.
T Consensus 189 ~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia 226 (709)
T PRK08691 189 HVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5432220 0000 011221 23466666666655544
No 176
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.01 E-value=0.72 Score=37.26 Aligned_cols=13 Identities=23% Similarity=0.043 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++++||+|+|||
T Consensus 2 ~~~~~G~~G~GKT 14 (173)
T cd03115 2 VILLVGLQGVGKT 14 (173)
T ss_pred EEEEECCCCCCHH
Confidence 5789999999999
No 177
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.92 E-value=2 Score=41.52 Aligned_cols=147 Identities=16% Similarity=0.096 Sum_probs=70.2
Q ss_pred cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228 52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA 121 (225)
Q Consensus 52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~ 121 (225)
-++++||+|+||+ -|..-+ ..+--|.- .-=..|.++.....-+.++- -.++++.|++++
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~--~~~pCg~C--------~~C~~i~~~~~~Dv~eidaa-s~~~vddIR~Ii 105 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCSNGP--TSDPCGTC--------HNCISIKNSNHPDVIEIDAA-SNTSVDDIKVIL 105 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCcCCC--CCCCcccc--------HHHHHHhccCCCCEEEEecc-cCCCHHHHHHHH
Confidence 5899999999999 111100 00111111 11113344444444444432 125677788776
Q ss_pred Hc---------CCeEEEE----ccHHHHHHHHh-hccCC---eEEEEecCCHHHHHH-HhccC--------CHHHHHHHH
Q psy10228 122 EK---------GKHCILD----VSGNAIKRLQV-ASLYP---VAIFIKPKSVESIME-MNKRM--------TEEQAKKMY 175 (225)
Q Consensus 122 ~~---------gk~~ild----v~~~gvk~L~~-~~~~P---i~IFI~pps~~~L~~-L~~R~--------seeei~~rl 175 (225)
+. .|++|+| ++..+...|.+ -+-.| +.||+. ...+.|-. ++.|. +++++.+++
T Consensus 106 e~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat-te~~Kl~~tI~SRc~~~~f~~l~~~el~~~L 184 (491)
T PRK14964 106 ENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT-TEVKKIPVTIISRCQRFDLQKIPTDKLVEHL 184 (491)
T ss_pred HHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe-CChHHHHHHHHHhheeeecccccHHHHHHHH
Confidence 43 4567776 24445544543 23233 344444 34444443 55443 567777666
Q ss_pred HHHHHHHH-hhCC-CCcEEE--ECCCHHHHHHHHHHHHH
Q psy10228 176 DRSMKMEQ-EFGE-FFTAVV--QGDMPEDIYQKVKEVIQ 210 (225)
Q Consensus 176 ~~a~k~E~-~~~~-~fd~vI--~Nddleea~~~lk~iI~ 210 (225)
.+..+.|. .+.+ -..+++ .+.++-.+.+.|..++.
T Consensus 185 ~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~ 223 (491)
T PRK14964 185 VDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAI 223 (491)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 66432221 0100 011221 24567777777766654
No 178
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.76 E-value=0.11 Score=48.15 Aligned_cols=29 Identities=17% Similarity=-0.019 Sum_probs=20.7
Q ss_pred ccccccccCCCCCCCCCCccEEEEccCCCCCC
Q psy10228 33 KFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~ 64 (225)
.|++++..+. +-..++++.|.||||||||
T Consensus 17 ~~~av~~isl---~i~~Gef~~lLGPSGcGKT 45 (352)
T COG3842 17 DFTAVDDISL---DIKKGEFVTLLGPSGCGKT 45 (352)
T ss_pred CeeEEeccee---eecCCcEEEEECCCCCCHH
Confidence 5566655543 2333578999999999999
No 179
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.62 E-value=1.4 Score=42.80 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=56.9
Q ss_pred cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228 52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA 121 (225)
Q Consensus 52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~ 121 (225)
-++++||+|+||+ -+.+.. .++--|. + .--..+.+|.|..+-+.++.. .+.++.|++++
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~--~~~pcg~---C-----~~C~~i~~~~~~d~~ei~~~~-~~~vd~ir~l~ 108 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAKSLNCETGV--TATPCGV---C-----SACLEIDSGRFVDLIEVDAAS-NTQVDAMRELL 108 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCC--CCCCCCC---C-----HHHHHHhcCCCCceeEeeccc-cCCHHHHHHHH
Confidence 4789999999999 222211 0011111 0 111235566666665555422 36778888776
Q ss_pred Hc---------CCeEEEE----ccHHHHHHHHh-hccCC---eEEEEecCCHHHHH-HHh--------ccCCHHHHHHHH
Q psy10228 122 EK---------GKHCILD----VSGNAIKRLQV-ASLYP---VAIFIKPKSVESIM-EMN--------KRMTEEQAKKMY 175 (225)
Q Consensus 122 ~~---------gk~~ild----v~~~gvk~L~~-~~~~P---i~IFI~pps~~~L~-~L~--------~R~seeei~~rl 175 (225)
+. .+++|+| ++..+...|-+ -+-.| +.||+.. +...+. .++ ++++.+++.+++
T Consensus 109 ~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~-d~~kil~tI~SRc~~~~f~~l~~~~i~~~L 187 (527)
T PRK14969 109 DNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT-DPQKIPVTVLSRCLQFNLKQMPPPLIVSHL 187 (527)
T ss_pred HHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeC-ChhhCchhHHHHHHHHhcCCCCHHHHHHHH
Confidence 52 2466665 24444444332 33333 3444442 222222 223 334677777666
Q ss_pred HHH
Q psy10228 176 DRS 178 (225)
Q Consensus 176 ~~a 178 (225)
.+.
T Consensus 188 ~~i 190 (527)
T PRK14969 188 QHI 190 (527)
T ss_pred HHH
Confidence 554
No 180
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.60 E-value=0.085 Score=46.49 Aligned_cols=19 Identities=5% Similarity=-0.162 Sum_probs=16.6
Q ss_pred CCCCCccEEEEccCCCCCC
Q psy10228 46 DGSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 46 ~~~~~~~ivl~GpsgsGK~ 64 (225)
+-..++++.|+||||||||
T Consensus 25 ~v~~GEfvsilGpSGcGKS 43 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKS 43 (248)
T ss_pred EECCCCEEEEECCCCCCHH
Confidence 4556789999999999999
No 181
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.23 E-value=2.3 Score=41.25 Aligned_cols=99 Identities=24% Similarity=0.270 Sum_probs=48.8
Q ss_pred ecHHHHHHHHHc---------CCeEEEE----ccHHHHHHHHhh-ccC-CeEEEEec-CCHHHHHH-HhccC--------
Q psy10228 112 TSVASVRDVAEK---------GKHCILD----VSGNAIKRLQVA-SLY-PVAIFIKP-KSVESIME-MNKRM-------- 166 (225)
Q Consensus 112 Ts~~sV~~v~~~---------gk~~ild----v~~~gvk~L~~~-~~~-Pi~IFI~p-ps~~~L~~-L~~R~-------- 166 (225)
++++.|+++++. .+++|+| ++..+...|... +-. +.++||-. ...+.+-. ++.|.
T Consensus 108 ~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~l 187 (507)
T PRK06645 108 TSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRL 187 (507)
T ss_pred CCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCC
Confidence 567788877643 4566666 234444444432 222 33444322 33444433 55443
Q ss_pred CHHHHHHHHHHHHHHHH-hhC-CCCcEEE--ECCCHHHHHHHHHHHHH
Q psy10228 167 TEEQAKKMYDRSMKMEQ-EFG-EFFTAVV--QGDMPEDIYQKVKEVIQ 210 (225)
Q Consensus 167 seeei~~rl~~a~k~E~-~~~-~~fd~vI--~Nddleea~~~lk~iI~ 210 (225)
+++++.+++....+.|. .+. .-.++++ .+.++-.+.+.|..++.
T Consensus 188 s~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 188 SFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAAS 235 (507)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 57777777765533221 000 0011221 34578888777777654
No 182
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=91.03 E-value=0.17 Score=44.23 Aligned_cols=15 Identities=7% Similarity=-0.101 Sum_probs=13.2
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|.||+|+|||
T Consensus 42 ~~~vll~GppGtGKT 56 (261)
T TIGR02881 42 VLHMIFKGNPGTGKT 56 (261)
T ss_pred cceEEEEcCCCCCHH
Confidence 346899999999999
No 183
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=90.76 E-value=6.9 Score=32.29 Aligned_cols=143 Identities=17% Similarity=0.211 Sum_probs=69.5
Q ss_pred EccCCCCCC----CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEc
Q psy10228 56 CYTQDDPTT----EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDV 131 (225)
Q Consensus 56 ~GpsgsGK~----s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv 131 (225)
+|.|||||| ..-++-- ..=++|-|.| +++..++|- .|.=+--..--+++ ..-.+......+.|++.|+-|
T Consensus 1 MGVsG~GKStvg~~lA~~lg-~~fidGDdlH---p~aNi~KM~-~GiPL~DdDR~pWL-~~l~~~~~~~~~~~~~~vi~C 74 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLG-AKFIDGDDLH---PPANIEKMS-AGIPLNDDDRWPWL-EALGDAAASLAQKNKHVVIAC 74 (161)
T ss_pred CCCCccCHHHHHHHHHHHcC-CceecccccC---CHHHHHHHh-CCCCCCcchhhHHH-HHHHHHHHHhhcCCCceEEec
Confidence 599999999 1111111 1124555533 566666652 23222111111111 111222333445688888777
Q ss_pred cHHHHHHHHh---hccCC--eEEEEecCCHHHHH-HHhccC----CHHHHHHHHHHHHHHHHhhCCCCcEEEE-CC-CHH
Q psy10228 132 SGNAIKRLQV---ASLYP--VAIFIKPKSVESIM-EMNKRM----TEEQAKKMYDRSMKMEQEFGEFFTAVVQ-GD-MPE 199 (225)
Q Consensus 132 ~~~gvk~L~~---~~~~P--i~IFI~pps~~~L~-~L~~R~----seeei~~rl~~a~k~E~~~~~~fd~vI~-Nd-dle 199 (225)
+- +|+-.. ++-.| .+||+..+ .+.+. +|..|- ..+-++..++. +|.--... |.+.+ .+ .++
T Consensus 75 SA--LKr~YRD~LR~~~~~~~Fv~L~g~-~~~i~~Rm~~R~gHFM~~~ll~SQfa~---LE~P~~de-~vi~idi~~~~e 147 (161)
T COG3265 75 SA--LKRSYRDLLREANPGLRFVYLDGD-FDLILERMKARKGHFMPASLLDSQFAT---LEEPGADE-DVLTIDIDQPPE 147 (161)
T ss_pred HH--HHHHHHHHHhccCCCeEEEEecCC-HHHHHHHHHhcccCCCCHHHHHHHHHH---hcCCCCCC-CEEEeeCCCCHH
Confidence 63 332211 12344 56888774 45554 477764 23333333332 23222333 55443 34 589
Q ss_pred HHHHHHHHHHHh
Q psy10228 200 DIYQKVKEVIQE 211 (225)
Q Consensus 200 ea~~~lk~iI~~ 211 (225)
+.++++.+.+..
T Consensus 148 ~vv~~~~~~l~~ 159 (161)
T COG3265 148 EVVAQALAWLKE 159 (161)
T ss_pred HHHHHHHHHHhc
Confidence 999888887764
No 184
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=90.69 E-value=0.58 Score=39.08 Aligned_cols=69 Identities=20% Similarity=0.189 Sum_probs=40.5
Q ss_pred CeEEEEccHHHHHHHHh---hccCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CH
Q psy10228 125 KHCILDVSGNAIKRLQV---ASLYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MP 198 (225)
Q Consensus 125 k~~ildv~~~gvk~L~~---~~~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dl 198 (225)
+.+++|+.. |-. ...+..+|+|.+|....++++.+| ++.+++..|+..-...+ +.....|+||.|+ ++
T Consensus 105 ~~~v~e~pL-----L~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~~~~~~~~~ri~~Q~~~~-~k~~~ad~vI~N~g~~ 178 (180)
T PF01121_consen 105 KVVVVEIPL-----LFESGLEKLCDEVIVVYAPEEIRIKRLMERDGLSEEEAEARIASQMPDE-EKRKRADFVIDNNGSL 178 (180)
T ss_dssp SEEEEE-TT-----TTTTTGGGGSSEEEEEE--HHHHHHHHHHHHTSTHHHHHHHHHTS--HH-HHHHH-SEEEE-SSHH
T ss_pred CEEEEEcch-----hhhhhHhhhhceEEEEECCHHHHHHHHHhhCCCcHHHHHHHHHhCCCHH-HHHHhCCEEEECCCCC
Confidence 678888654 222 234567899998866667775444 58899988877643222 2235789999998 45
Q ss_pred H
Q psy10228 199 E 199 (225)
Q Consensus 199 e 199 (225)
+
T Consensus 179 ~ 179 (180)
T PF01121_consen 179 E 179 (180)
T ss_dssp H
T ss_pred C
Confidence 4
No 185
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.69 E-value=0.33 Score=43.52 Aligned_cols=13 Identities=15% Similarity=0.020 Sum_probs=11.8
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
+|.|+|+||||||
T Consensus 1 IIgItG~SGSGKT 13 (277)
T cd02029 1 VIAVTGSSGAGTT 13 (277)
T ss_pred CEEEECCCCCCHH
Confidence 4789999999999
No 186
>PRK15453 phosphoribulokinase; Provisional
Probab=90.68 E-value=0.16 Score=45.71 Aligned_cols=14 Identities=14% Similarity=-0.012 Sum_probs=12.6
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
-.|.|+|.||||||
T Consensus 6 piI~ItG~SGsGKT 19 (290)
T PRK15453 6 PIIAVTGSSGAGTT 19 (290)
T ss_pred cEEEEECCCCCCHH
Confidence 46889999999999
No 187
>PLN03025 replication factor C subunit; Provisional
Probab=90.68 E-value=2.2 Score=38.33 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=11.8
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++|.||+|+||+
T Consensus 36 ~lll~Gp~G~GKT 48 (319)
T PLN03025 36 NLILSGPPGTGKT 48 (319)
T ss_pred eEEEECCCCCCHH
Confidence 3789999999999
No 188
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=90.62 E-value=0.83 Score=35.51 Aligned_cols=13 Identities=0% Similarity=-0.100 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 4 ~i~i~G~~~~GKs 16 (174)
T cd01895 4 RIAIIGRPNVGKS 16 (174)
T ss_pred EEEEEcCCCCCHH
Confidence 4899999999999
No 189
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=90.51 E-value=0.12 Score=46.14 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=15.6
Q ss_pred CCCCccEEEEccCCCCCC
Q psy10228 47 GSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 47 ~~~~~~ivl~GpsgsGK~ 64 (225)
-..+++++|+||||||||
T Consensus 24 I~~gef~vliGpSGsGKT 41 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKT 41 (309)
T ss_pred ecCCeEEEEECCCCCcHH
Confidence 445679999999999999
No 190
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=90.32 E-value=4.2 Score=41.81 Aligned_cols=96 Identities=18% Similarity=0.262 Sum_probs=49.8
Q ss_pred cHHHHHHHH---------HcCCeEEEE----ccHHHHHHHHh-hccCC---eEEEEecCCHHHHHH-HhccC--------
Q psy10228 113 SVASVRDVA---------EKGKHCILD----VSGNAIKRLQV-ASLYP---VAIFIKPKSVESIME-MNKRM-------- 166 (225)
Q Consensus 113 s~~sV~~v~---------~~gk~~ild----v~~~gvk~L~~-~~~~P---i~IFI~pps~~~L~~-L~~R~-------- 166 (225)
.++.|+++. ...|++||| ++..+...|.+ .+-.| ++||+. .+.+.|.. |+.|.
T Consensus 101 ~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t-t~~~kLl~TIrSRc~~v~F~~l 179 (824)
T PRK07764 101 GVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT-TEPDKVIGTIRSRTHHYPFRLV 179 (824)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe-CChhhhhHHHHhheeEEEeeCC
Confidence 467777654 235677877 45666666554 33333 455555 44555544 77663
Q ss_pred CHHHHHHHHHHHHHHHH-hhCC-CCcEE--EECCCHHHHHHHHHHHH
Q psy10228 167 TEEQAKKMYDRSMKMEQ-EFGE-FFTAV--VQGDMPEDIYQKVKEVI 209 (225)
Q Consensus 167 seeei~~rl~~a~k~E~-~~~~-~fd~v--I~Nddleea~~~lk~iI 209 (225)
+.+++.+.|.+..+.|- .+.. ...++ ..+.|+-.+++.|.+++
T Consensus 180 ~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLi 226 (824)
T PRK07764 180 PPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLL 226 (824)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 57777766665322110 0000 01111 22456777777666655
No 191
>KOG3062|consensus
Probab=90.31 E-value=0.48 Score=41.73 Aligned_cols=52 Identities=31% Similarity=0.311 Sum_probs=32.8
Q ss_pred ceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccC---------CeEEEEecCCHHHHHHHh
Q psy10228 109 LYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLY---------PVAIFIKPKSVESIMEMN 163 (225)
Q Consensus 109 ~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~---------Pi~IFI~pps~~~L~~L~ 163 (225)
.-|-.+++|+.-+.+|.++|+| +.+-|+-.++ ++| -.+||..+|- +..++.+
T Consensus 59 lRg~L~S~v~R~Lsk~~iVI~D-slNyIKGfRY-eLyC~ak~~~tt~Cvv~t~vp~-e~~r~~N 119 (281)
T KOG3062|consen 59 LRGKLRSAVDRSLSKGDIVIVD-SLNYIKGFRY-ELYCEAKAARTTYCVVHTAVPQ-ELCREWN 119 (281)
T ss_pred HHHHHHHHHHhhcccCcEEEEe-ccccccccee-eeeeehhccceeEEEEEecCCH-HHHHHhc
Confidence 3444567888888999999999 5555544442 222 1568887763 4444454
No 192
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.06 E-value=0.16 Score=39.22 Aligned_cols=15 Identities=7% Similarity=-0.071 Sum_probs=13.9
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
.+.++|+||||||||
T Consensus 15 ge~v~I~GpSGsGKS 29 (107)
T cd00820 15 KVGVLITGDSGIGKT 29 (107)
T ss_pred CEEEEEEcCCCCCHH
Confidence 568999999999999
No 193
>CHL00181 cbbX CbbX; Provisional
Probab=89.83 E-value=3.5 Score=36.87 Aligned_cols=15 Identities=7% Similarity=-0.104 Sum_probs=13.1
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|.||+|+|||
T Consensus 59 ~~~ill~G~pGtGKT 73 (287)
T CHL00181 59 GLHMSFTGSPGTGKT 73 (287)
T ss_pred CceEEEECCCCCCHH
Confidence 346899999999999
No 194
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=89.80 E-value=0.17 Score=44.08 Aligned_cols=15 Identities=0% Similarity=-0.148 Sum_probs=13.5
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+..++++|+||+|||
T Consensus 120 ~~~~~~~G~sgvGKS 134 (245)
T TIGR00157 120 NRISVFAGQSGVGKS 134 (245)
T ss_pred CCEEEEECCCCCCHH
Confidence 358899999999999
No 195
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=89.79 E-value=1.8 Score=40.94 Aligned_cols=65 Identities=29% Similarity=0.468 Sum_probs=35.9
Q ss_pred cHHHHHHHHHc-------CCeEEEEccHHHHHHHHhhc---cCC-----eEEEEec----CCHHHHHHHhc--------c
Q psy10228 113 SVASVRDVAEK-------GKHCILDVSGNAIKRLQVAS---LYP-----VAIFIKP----KSVESIMEMNK--------R 165 (225)
Q Consensus 113 s~~sV~~v~~~-------gk~~ildv~~~gvk~L~~~~---~~P-----i~IFI~p----ps~~~L~~L~~--------R 165 (225)
.+..|++++++ |+-.||-||- |.++.+.+ +-| .+|||-. ||.+.--.|+. .
T Consensus 85 gvkdlr~i~e~a~~~~~~gr~tiLflDE--IHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~ 162 (436)
T COG2256 85 GVKDLREIIEEARKNRLLGRRTILFLDE--IHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKP 162 (436)
T ss_pred cHHHHHHHHHHHHHHHhcCCceEEEEeh--hhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeec
Confidence 35556666544 3444555543 44555442 334 5688865 44432222333 3
Q ss_pred CCHHHHHHHHHHHH
Q psy10228 166 MTEEQAKKMYDRSM 179 (225)
Q Consensus 166 ~seeei~~rl~~a~ 179 (225)
++.++|.+.+.+|.
T Consensus 163 L~~~di~~~l~ra~ 176 (436)
T COG2256 163 LSSEDIKKLLKRAL 176 (436)
T ss_pred CCHHHHHHHHHHHH
Confidence 47889998898874
No 196
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=89.73 E-value=0.61 Score=38.54 Aligned_cols=13 Identities=8% Similarity=-0.100 Sum_probs=11.9
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
+|.|+|+||||||
T Consensus 1 ii~i~G~sgsGKt 13 (179)
T cd02028 1 VVGIAGPSGSGKT 13 (179)
T ss_pred CEEEECCCCCCHH
Confidence 4789999999999
No 197
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=89.61 E-value=0.65 Score=38.31 Aligned_cols=13 Identities=0% Similarity=-0.056 Sum_probs=12.2
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.|+|+|++|||||
T Consensus 3 ~ili~G~~~sGKS 15 (170)
T PRK05800 3 LILVTGGARSGKS 15 (170)
T ss_pred EEEEECCCCccHH
Confidence 5899999999999
No 198
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=89.56 E-value=0.12 Score=38.93 Aligned_cols=12 Identities=0% Similarity=-0.108 Sum_probs=11.5
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+|+|++|+|||
T Consensus 2 V~iiG~~~~GKS 13 (116)
T PF01926_consen 2 VAIIGRPNVGKS 13 (116)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 789999999999
No 199
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=89.47 E-value=5.6 Score=33.82 Aligned_cols=83 Identities=18% Similarity=0.293 Sum_probs=43.8
Q ss_pred HcCCeEEEE-ccHHHHHHHHhhccCC----eEEEEecCCHHHHHHHhccCCHHHHHHHHHHHHHHHHh-h---------C
Q psy10228 122 EKGKHCILD-VSGNAIKRLQVASLYP----VAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQE-F---------G 186 (225)
Q Consensus 122 ~~gk~~ild-v~~~gvk~L~~~~~~P----i~IFI~pps~~~L~~L~~R~seeei~~rl~~a~k~E~~-~---------~ 186 (225)
+.|-++|.- |+|-...+-+.+.+.+ +-|||..| +++.+ +|. -+-.+.+|..-|+. | .
T Consensus 93 daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~p-l~vce---~RD----pKGLYkKAr~GeI~~fTGid~pYE~P 164 (197)
T COG0529 93 DAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTP-LEVCE---RRD----PKGLYKKARAGEIKNFTGIDSPYEAP 164 (197)
T ss_pred HCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCC-HHHHH---hcC----chHHHHHHHcCCCCCCcCCCCCCCCC
Confidence 457666653 6764432222233333 56899887 45543 221 12234455333331 1 1
Q ss_pred CCCcEEEECC--CHHHHHHHHHHHHHhc
Q psy10228 187 EFFTAVVQGD--MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 187 ~~fd~vI~Nd--dleea~~~lk~iI~~~ 212 (225)
...|.+|..+ ++++.+.+|...+...
T Consensus 165 ~~Pel~l~t~~~~vee~v~~i~~~l~~~ 192 (197)
T COG0529 165 ENPELHLDTDRNSVEECVEQILDLLKER 192 (197)
T ss_pred CCCeeEeccccCCHHHHHHHHHHHHHhc
Confidence 2345555533 6899999998888654
No 200
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=89.45 E-value=2.9 Score=38.50 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=11.8
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
+.+|+|++|||||
T Consensus 1 ~~~l~Gl~GaGKS 13 (340)
T TIGR03575 1 LCVLCGLPAAGKS 13 (340)
T ss_pred CeEEECCCCCCHH
Confidence 3689999999999
No 201
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=89.23 E-value=5.6 Score=36.34 Aligned_cols=150 Identities=13% Similarity=0.181 Sum_probs=87.1
Q ss_pred CCCCccEEEEccCCCCCC---------------------CcccCCCCCCCCCCcceEEecCHHHHHHhh-hCCcEEEEEE
Q psy10228 47 GSDQEPFMLCYTQDDPTT---------------------EDTTRARREYEVDGRDYHFVSSREQMEKDI-QNHLFIEAGQ 104 (225)
Q Consensus 47 ~~~~~~ivl~GpsgsGK~---------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i-~~~~FiE~~~ 104 (225)
+.....|=|+|++|+||| ---|.|.--|-+=| ++--|+..- +.|-|+----
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG-------DRiRM~~~~~~~~vFiRs~~ 120 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG-------DRIRMQRLAVDPGVFIRSSP 120 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc-------cHhhHHhhccCCCeEEeecC
Confidence 344456789999999999 11223322233333 567787776 7889998888
Q ss_pred eCCcceeecHHHHHHHH---HcCCeEEE-EccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCHHHHHHHHHHHHH
Q psy10228 105 YNDNLYGTSVASVRDVA---EKGKHCIL-DVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMK 180 (225)
Q Consensus 105 ~~gn~YGTs~~sV~~v~---~~gk~~il-dv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~~rl~~a~k 180 (225)
-.|.+=|.|..+-.-+. +.|.++|+ +.-+-|--.......--+++++..|..- ++++ +
T Consensus 121 srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~G-----------D~~Q-----~-- 182 (323)
T COG1703 121 SRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAG-----------DDLQ-----G-- 182 (323)
T ss_pred CCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCCC-----------cHHH-----H--
Confidence 88989999877544322 44776554 3333231122222333477888877531 1221 1
Q ss_pred HHHhhCCCCcEEEECC-C---HHHHHHHHHHHHHhc---cCCceeeeC
Q psy10228 181 MEQEFGEFFTAVVQGD-M---PEDIYQKVKEVIQEQ---SGPSIWVPS 221 (225)
Q Consensus 181 ~E~~~~~~fd~vI~Nd-d---leea~~~lk~iI~~~---~~~~~WVp~ 221 (225)
+.....+.-|.+++|- | .+.++..|...+... ..++-|-|.
T Consensus 183 iK~GimEiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~pp 230 (323)
T COG1703 183 IKAGIMEIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPP 230 (323)
T ss_pred HHhhhhhhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCc
Confidence 1122234557777774 3 556677776666655 567777663
No 202
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=88.94 E-value=0.22 Score=43.34 Aligned_cols=33 Identities=9% Similarity=0.139 Sum_probs=24.5
Q ss_pred cEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEe
Q psy10228 52 PFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFV 84 (225)
Q Consensus 52 ~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV 84 (225)
+++|+||+|+||| +.+|-.|-+.|..|..-.|.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL 61 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYL 61 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeee
Confidence 6899999999999 66777778889999988887
No 203
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=88.90 E-value=0.67 Score=40.15 Aligned_cols=14 Identities=7% Similarity=-0.183 Sum_probs=12.4
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.+|-|+|+||||||
T Consensus 9 iiIgIaG~SgSGKT 22 (218)
T COG0572 9 IIIGIAGGSGSGKT 22 (218)
T ss_pred EEEEEeCCCCCCHH
Confidence 46779999999998
No 204
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=88.83 E-value=1.9 Score=40.94 Aligned_cols=106 Identities=8% Similarity=0.107 Sum_probs=53.5
Q ss_pred ccEEEEccCCCCCC------CcccCCCCCCCCCCcceEEecCHHHHHHhh----hC-------------CcEEEEEEeCC
Q psy10228 51 EPFMLCYTQDDPTT------EDTTRARREYEVDGRDYHFVSSREQMEKDI----QN-------------HLFIEAGQYND 107 (225)
Q Consensus 51 ~~ivl~GpsgsGK~------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i----~~-------------~~FiE~~~~~g 107 (225)
.+++|.||+|+||| .+.-+. ...|....|+ +-++|...+ .. -..|-.-+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~----~~~~~~v~yi-~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~ 205 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQ----NEPDLRVMYI-TSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQF 205 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHH----hCCCCeEEEE-EHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhh
Confidence 47999999999999 111110 0123455677 555544332 11 22332222221
Q ss_pred --cceee---cHHHHHHHHHcCCeEEEE--ccHHHHHHH----HhhccCCeEEEEecCCHHHHHH
Q psy10228 108 --NLYGT---SVASVRDVAEKGKHCILD--VSGNAIKRL----QVASLYPVAIFIKPKSVESIME 161 (225)
Q Consensus 108 --n~YGT---s~~sV~~v~~~gk~~ild--v~~~gvk~L----~~~~~~Pi~IFI~pps~~~L~~ 161 (225)
...++ -...+....+.|+.+|+- ..|..+..+ ..+-....++-|.||+.+.+..
T Consensus 206 l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 206 LIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred hcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 01111 112234455667777764 345444333 2221224678899999877665
No 205
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=88.67 E-value=0.17 Score=42.63 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=11.3
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|+|+||+|||||
T Consensus 4 ~~vlL~Gps~SGKT 17 (181)
T PF09439_consen 4 PTVLLVGPSGSGKT 17 (181)
T ss_dssp -EEEEE-STTSSHH
T ss_pred ceEEEEcCCCCCHH
Confidence 46899999999999
No 206
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=88.64 E-value=5.2 Score=39.75 Aligned_cols=14 Identities=7% Similarity=0.128 Sum_probs=12.5
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-++++||.|+||+
T Consensus 39 hA~Lf~GP~GvGKT 52 (605)
T PRK05896 39 HAYIFSGPRGIGKT 52 (605)
T ss_pred ceEEEECCCCCCHH
Confidence 35899999999999
No 207
>PRK12289 GTPase RsgA; Reviewed
Probab=88.54 E-value=0.21 Score=46.08 Aligned_cols=14 Identities=0% Similarity=-0.145 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|+|+||+|||
T Consensus 173 ki~v~iG~SgVGKS 186 (352)
T PRK12289 173 KITVVAGPSGVGKS 186 (352)
T ss_pred ceEEEEeCCCCCHH
Confidence 46899999999998
No 208
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.35 E-value=3.8 Score=40.25 Aligned_cols=115 Identities=17% Similarity=0.107 Sum_probs=57.2
Q ss_pred cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228 52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA 121 (225)
Q Consensus 52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~ 121 (225)
.++++||.|+||+ -|... ..++--|. + ..-..|..|....+-+++|.. .+.++.|+++.
T Consensus 40 ayLf~Gp~G~GKtt~A~~lak~l~c~~~--~~~~~c~~--c------~~c~~i~~g~~~d~~eid~~s-~~~v~~ir~l~ 108 (576)
T PRK14965 40 AFLFTGARGVGKTSTARILAKALNCEQG--LTAEPCNV--C------PPCVEITEGRSVDVFEIDGAS-NTGVDDIRELR 108 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhcCCCC--CCCCCCCc--c------HHHHHHhcCCCCCeeeeeccC-ccCHHHHHHHH
Confidence 5789999999998 22111 11111121 1 111234445555555555421 24566777665
Q ss_pred Hc---------CCeEEEE----ccHHHHHHHHh-hccCC-e--EEEEecCCHHHHHH-Hhcc--------CCHHHHHHHH
Q psy10228 122 EK---------GKHCILD----VSGNAIKRLQV-ASLYP-V--AIFIKPKSVESIME-MNKR--------MTEEQAKKMY 175 (225)
Q Consensus 122 ~~---------gk~~ild----v~~~gvk~L~~-~~~~P-i--~IFI~pps~~~L~~-L~~R--------~seeei~~rl 175 (225)
+. .|++|+| ++..+...|.+ .+-.| . .||+. .+.+.|-. ++.| ++.+++..++
T Consensus 109 ~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t-~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L 187 (576)
T PRK14965 109 ENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFAT-TEPHKVPITILSRCQRFDFRRIPLQKIVDRL 187 (576)
T ss_pred HHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEe-CChhhhhHHHHHhhhhhhcCCCCHHHHHHHH
Confidence 42 4677776 24445544543 23333 3 44444 33444443 5543 3567777666
Q ss_pred HHH
Q psy10228 176 DRS 178 (225)
Q Consensus 176 ~~a 178 (225)
...
T Consensus 188 ~~i 190 (576)
T PRK14965 188 RYI 190 (576)
T ss_pred HHH
Confidence 553
No 209
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.28 E-value=4.6 Score=41.93 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=11.9
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++|+||.|+||+
T Consensus 40 AyLFtGPpGtGKT 52 (944)
T PRK14949 40 AYLFTGTRGVGKT 52 (944)
T ss_pred EEEEECCCCCCHH
Confidence 4689999999999
No 210
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=88.21 E-value=3.6 Score=41.14 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=57.1
Q ss_pred cEEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228 52 PFMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA 121 (225)
Q Consensus 52 ~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~ 121 (225)
-++++||.|+||+ -|.+.. .++--|. . ..-..|.+|.|..+-++++.. .+.++.|++++
T Consensus 40 AyLf~Gp~GvGKTTlAr~lAk~L~c~~~~--~~~pCg~------C--~~C~~i~~g~~~D~ieidaas-~~~VddiR~li 108 (647)
T PRK07994 40 AYLFSGTRGVGKTTIARLLAKGLNCETGI--TATPCGE------C--DNCREIEQGRFVDLIEIDAAS-RTKVEDTRELL 108 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhccCC--CCCCCCC------C--HHHHHHHcCCCCCceeecccc-cCCHHHHHHHH
Confidence 3789999999998 221110 0001111 0 222345566666655555432 24567777765
Q ss_pred Hc---------CCeEEEE----ccHHHHHHHHh-hccCC-eEEEEec-CCHHHHHH-Hhcc--------CCHHHHHHHHH
Q psy10228 122 EK---------GKHCILD----VSGNAIKRLQV-ASLYP-VAIFIKP-KSVESIME-MNKR--------MTEEQAKKMYD 176 (225)
Q Consensus 122 ~~---------gk~~ild----v~~~gvk~L~~-~~~~P-i~IFI~p-ps~~~L~~-L~~R--------~seeei~~rl~ 176 (225)
+. .|++|+| ++..+...|-+ .+-.| .++||.. .+...|.. ++.| ++.+++..+|.
T Consensus 109 ~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~ 188 (647)
T PRK07994 109 DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLE 188 (647)
T ss_pred HHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHH
Confidence 33 3577776 45555555533 33333 3333322 22223322 3322 35667766665
Q ss_pred HH
Q psy10228 177 RS 178 (225)
Q Consensus 177 ~a 178 (225)
+.
T Consensus 189 ~i 190 (647)
T PRK07994 189 HI 190 (647)
T ss_pred HH
Confidence 53
No 211
>PRK10867 signal recognition particle protein; Provisional
Probab=88.18 E-value=7.7 Score=36.93 Aligned_cols=37 Identities=8% Similarity=0.016 Sum_probs=21.6
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHHhccCCceeeeCCCC
Q psy10228 188 FFTAVVQGD-MPEDIYQKVKEVIQEQSGPSIWVPSKDP 224 (225)
Q Consensus 188 ~fd~vI~Nd-dleea~~~lk~iI~~~~~~~~WVp~~~~ 224 (225)
..+.+|.+- |-+.-...+..+.....-|..++...++
T Consensus 241 ~i~giIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~ 278 (433)
T PRK10867 241 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEK 278 (433)
T ss_pred CCCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCc
Confidence 356666654 4334445566666666666666666654
No 212
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=87.93 E-value=5.5 Score=39.45 Aligned_cols=13 Identities=31% Similarity=0.278 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-++|+||+|+||+
T Consensus 48 a~L~~Gp~GvGKT 60 (598)
T PRK09111 48 AFMLTGVRGVGKT 60 (598)
T ss_pred eEEEECCCCCCHH
Confidence 5899999999999
No 213
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=87.83 E-value=2 Score=42.69 Aligned_cols=105 Identities=13% Similarity=0.211 Sum_probs=55.4
Q ss_pred ccEEEEccCCCCCC------CcccCCCCCCCCCCcceEEecCHHHHHHhh----hCCc------------EEEEEEeCCc
Q psy10228 51 EPFMLCYTQDDPTT------EDTTRARREYEVDGRDYHFVSSREQMEKDI----QNHL------------FIEAGQYNDN 108 (225)
Q Consensus 51 ~~ivl~GpsgsGK~------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i----~~~~------------FiE~~~~~gn 108 (225)
.+++|.|++|+||| .+..... ..|..-.|+ +-++|...+ .++. .|-.-.++ .
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~----~~g~~V~Yi-taeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq-~ 388 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRL----YPGTRVRYV-SSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQ-F 388 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHh----CCCCeEEEe-eHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhc-c
Confidence 47999999999999 3332211 124455677 565554222 2221 12111111 0
Q ss_pred ceee------cHHHHHHHHHcCCeEEEEc--cHHHH----HHHHhhccCCeEEEEecCCHHHHHH
Q psy10228 109 LYGT------SVASVRDVAEKGKHCILDV--SGNAI----KRLQVASLYPVAIFIKPKSVESIME 161 (225)
Q Consensus 109 ~YGT------s~~sV~~v~~~gk~~ildv--~~~gv----k~L~~~~~~Pi~IFI~pps~~~L~~ 161 (225)
.-|. -..-+....+.|+.+|+-. .+..+ .+|..+-....++-|.+|+.+....
T Consensus 389 l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 389 LEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 1121 1233455566677777643 33333 3344433345889999999877665
No 214
>KOG1970|consensus
Probab=87.79 E-value=0.32 Score=47.57 Aligned_cols=58 Identities=10% Similarity=0.022 Sum_probs=33.7
Q ss_pred CccEEEEccCCCCCC-------------------CcccCCC--CCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCc
Q psy10228 50 QEPFMLCYTQDDPTT-------------------EDTTRAR--REYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDN 108 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~-------------------s~TTRp~--R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn 108 (225)
.++.+|+|||||||+ |.-++-| -..|.-|....|++--+.|+. |+|...-.|.
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fes------Fler~~kyg~ 183 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFES------FLLRATKYGS 183 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHH------HHHHHHhhch
Confidence 358999999999999 4445544 223444444333323445553 6666544555
Q ss_pred ceeec
Q psy10228 109 LYGTS 113 (225)
Q Consensus 109 ~YGTs 113 (225)
+|+..
T Consensus 184 l~~~g 188 (634)
T KOG1970|consen 184 LQMSG 188 (634)
T ss_pred hhhcc
Confidence 66544
No 215
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.76 E-value=4.6 Score=40.17 Aligned_cols=13 Identities=8% Similarity=0.217 Sum_probs=11.8
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-+++.||.|+||+
T Consensus 40 a~Lf~Gp~G~GKt 52 (620)
T PRK14948 40 AYLFTGPRGTGKT 52 (620)
T ss_pred eEEEECCCCCChH
Confidence 4689999999999
No 216
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=87.68 E-value=0.18 Score=42.78 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=22.3
Q ss_pred EEEEccCCCCCC-------------------CcccCCC-CCCCCCCcceEEecC
Q psy10228 53 FMLCYTQDDPTT-------------------EDTTRAR-REYEVDGRDYHFVSS 86 (225)
Q Consensus 53 ivl~GpsgsGK~-------------------s~TTRp~-R~~E~dG~dY~FV~s 86 (225)
|+|+|++||||| ++|+.+- ..++++|+...+|+|
T Consensus 3 IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDT 56 (212)
T PF04548_consen 3 ILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDT 56 (212)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE-
T ss_pred EEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeC
Confidence 899999999999 3444443 234677877777744
No 217
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=87.61 E-value=0.21 Score=37.56 Aligned_cols=12 Identities=8% Similarity=-0.075 Sum_probs=11.5
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+|+|++|||||
T Consensus 1 I~i~G~~GsGKt 12 (129)
T PF13238_consen 1 IGISGIPGSGKT 12 (129)
T ss_dssp EEEEESTTSSHH
T ss_pred CEEECCCCCCHH
Confidence 789999999999
No 218
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=87.52 E-value=0.26 Score=36.36 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=12.8
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|+||+|+|||
T Consensus 3 ~~~~l~G~~G~GKT 16 (148)
T smart00382 3 EVILIVGPPGSGKT 16 (148)
T ss_pred CEEEEECCCCCcHH
Confidence 46899999999999
No 219
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=87.37 E-value=5.9 Score=36.75 Aligned_cols=107 Identities=17% Similarity=0.213 Sum_probs=52.9
Q ss_pred ccEEEEccCCCCCCCcccCCC----CCCCCCCcceEEecCHHHHHHhh----------------hCCcEEEEEEeCCcce
Q psy10228 51 EPFMLCYTQDDPTTEDTTRAR----REYEVDGRDYHFVSSREQMEKDI----------------QNHLFIEAGQYNDNLY 110 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s~TTRp~----R~~E~dG~dY~FV~s~eef~~~i----------------~~~~FiE~~~~~gn~Y 110 (225)
.+++|.||+|+|||. -.+.- .. ...|....|+ +-++|...+ ..-+.|-.-.++- .-
T Consensus 137 n~l~l~G~~G~GKTh-L~~ai~~~l~~-~~~~~~v~yi-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~-l~ 212 (405)
T TIGR00362 137 NPLFIYGGVGLGKTH-LLHAIGNEILE-NNPNAKVVYV-SSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQF-LA 212 (405)
T ss_pred CeEEEECCCCCcHHH-HHHHHHHHHHH-hCCCCcEEEE-EHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhh-hc
Confidence 478999999999990 00000 00 0124556677 555544322 2222332222221 11
Q ss_pred ee------cHHHHHHHHHcCCeEEEEc--cHHHHHH----HHhhccCCeEEEEecCCHHHHHH
Q psy10228 111 GT------SVASVRDVAEKGKHCILDV--SGNAIKR----LQVASLYPVAIFIKPKSVESIME 161 (225)
Q Consensus 111 GT------s~~sV~~v~~~gk~~ildv--~~~gvk~----L~~~~~~Pi~IFI~pps~~~L~~ 161 (225)
|. -...+....+.|+.+|+-. .+..+.. |..+-.....|.|.||+.+.+..
T Consensus 213 ~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 213 GKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 11 1122344556777666643 3444432 22211123679999999877665
No 220
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.33 E-value=4.7 Score=38.94 Aligned_cols=86 Identities=17% Similarity=0.238 Sum_probs=41.5
Q ss_pred CeEEEE----ccHHHHHHHHh-hccCC-eEEEEec-CCHHHHHH-Hhcc--------CCHHHHHHHHHHHHHHHH-hhC-
Q psy10228 125 KHCILD----VSGNAIKRLQV-ASLYP-VAIFIKP-KSVESIME-MNKR--------MTEEQAKKMYDRSMKMEQ-EFG- 186 (225)
Q Consensus 125 k~~ild----v~~~gvk~L~~-~~~~P-i~IFI~p-ps~~~L~~-L~~R--------~seeei~~rl~~a~k~E~-~~~- 186 (225)
+++|+| ++..+...|-. .+-.| .+|||-. .....|.. ++.| ++.+++.+++.+..+.|- .+.
T Consensus 123 KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~ 202 (484)
T PRK14956 123 KVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQ 202 (484)
T ss_pred EEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 466666 34455544433 33333 4556543 23344432 4433 467788777776543221 110
Q ss_pred CCCcEEE--ECCCHHHHHHHHHHHHH
Q psy10228 187 EFFTAVV--QGDMPEDIYQKVKEVIQ 210 (225)
Q Consensus 187 ~~fd~vI--~Nddleea~~~lk~iI~ 210 (225)
.-.+.|+ .+.++-+|++-|.+++.
T Consensus 203 eAL~~Ia~~S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 203 EGLFWIAKKGDGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0112222 23467777777766554
No 221
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=87.08 E-value=2.9 Score=37.93 Aligned_cols=66 Identities=21% Similarity=0.336 Sum_probs=36.8
Q ss_pred ecHHHHHHHH---------HcCCeEEEE----ccHHHHHHHHh-hccCC--eEEEEecCCHHHHHH-HhccC--------
Q psy10228 112 TSVASVRDVA---------EKGKHCILD----VSGNAIKRLQV-ASLYP--VAIFIKPKSVESIME-MNKRM-------- 166 (225)
Q Consensus 112 Ts~~sV~~v~---------~~gk~~ild----v~~~gvk~L~~-~~~~P--i~IFI~pps~~~L~~-L~~R~-------- 166 (225)
++++.|+++. ...|++|++ ++..+..+|-+ -+-.| +.|++.. +.+.|-. ++.|.
T Consensus 104 I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~-~~~~Ll~TI~SRcq~i~f~~l 182 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAP-SPESLLPTIVSRCQIIPFYRL 182 (314)
T ss_pred CcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEEC-ChHhCcHHHHhhceEEecCCC
Confidence 5677777774 235677776 34555544433 33344 4455544 4455544 66554
Q ss_pred CHHHHHHHHHHH
Q psy10228 167 TEEQAKKMYDRS 178 (225)
Q Consensus 167 seeei~~rl~~a 178 (225)
+++++.+.+.+.
T Consensus 183 ~~~~~~~~L~~~ 194 (314)
T PRK07399 183 SDEQLEQVLKRL 194 (314)
T ss_pred CHHHHHHHHHHh
Confidence 577777666654
No 222
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=86.93 E-value=0.28 Score=34.12 Aligned_cols=13 Identities=0% Similarity=-0.107 Sum_probs=11.7
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.|+|+|++||||+
T Consensus 1 ~i~i~G~~gsGKs 13 (69)
T cd02019 1 IIAITGGSGSGKS 13 (69)
T ss_pred CEEEECCCCCCHH
Confidence 3789999999998
No 223
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=86.91 E-value=0.3 Score=47.09 Aligned_cols=18 Identities=17% Similarity=0.301 Sum_probs=15.5
Q ss_pred CCCCccEEEEccCCCCCC
Q psy10228 47 GSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 47 ~~~~~~ivl~GpsgsGK~ 64 (225)
...++.++|+||||||||
T Consensus 29 i~~GEiv~L~G~SGsGKS 46 (504)
T TIGR03238 29 LPSSSLLFLCGSSGDGKS 46 (504)
T ss_pred ecCCCEEEEECCCCCCHH
Confidence 344679999999999999
No 224
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=86.64 E-value=0.48 Score=43.08 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=44.5
Q ss_pred ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCc-ceeecHHHHHHHHHcCCeEEE
Q psy10228 51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDN-LYGTSVASVRDVAEKGKHCIL 129 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn-~YGTs~~sV~~v~~~gk~~il 129 (225)
.=++|.|+||+|||..+..-...| |-|| + ++-++....+++ ++|++.+.++..++---.-|+
T Consensus 147 ~GvLi~G~SG~GKSelALeLi~rG------h~LV-a----------DD~v~i~~~~~~~L~g~~p~~l~~~lEvRG~GIi 209 (308)
T PRK05428 147 IGVLITGESGIGKSETALELIKRG------HRLV-A----------DDAVDIKRIGPDTLEGRCPELLQHLLEIRGLGII 209 (308)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC------CceE-e----------cCeEEEEEecCCEEEeeCchhhcchhhhcCCcEE
Confidence 457899999999994333222111 3477 3 356777777777 899998888888877556666
Q ss_pred Ecc
Q psy10228 130 DVS 132 (225)
Q Consensus 130 dv~ 132 (225)
|+.
T Consensus 210 ~v~ 212 (308)
T PRK05428 210 DVR 212 (308)
T ss_pred ehh
Confidence 664
No 225
>PRK05439 pantothenate kinase; Provisional
Probab=86.37 E-value=0.64 Score=42.32 Aligned_cols=15 Identities=0% Similarity=-0.288 Sum_probs=12.9
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
.-+|.|+|++|||||
T Consensus 86 ~~iIgIaG~~gsGKS 100 (311)
T PRK05439 86 PFIIGIAGSVAVGKS 100 (311)
T ss_pred CEEEEEECCCCCCHH
Confidence 346779999999999
No 226
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=86.33 E-value=0.39 Score=35.91 Aligned_cols=15 Identities=13% Similarity=0.122 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|.||+|+|||
T Consensus 19 ~~~v~i~G~~G~GKT 33 (151)
T cd00009 19 PKNLLLYGPPGTGKT 33 (151)
T ss_pred CCeEEEECCCCCCHH
Confidence 468999999999999
No 227
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=86.31 E-value=0.36 Score=42.57 Aligned_cols=18 Identities=6% Similarity=-0.095 Sum_probs=16.1
Q ss_pred CCCCccEEEEccCCCCCC
Q psy10228 47 GSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 47 ~~~~~~ivl~GpsgsGK~ 64 (225)
-+.+++++|+||||||||
T Consensus 27 I~~GE~VaiIG~SGaGKS 44 (258)
T COG3638 27 INQGEMVAIIGPSGAGKS 44 (258)
T ss_pred eCCCcEEEEECCCCCcHH
Confidence 456789999999999999
No 228
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=86.16 E-value=0.41 Score=51.88 Aligned_cols=56 Identities=11% Similarity=0.116 Sum_probs=32.5
Q ss_pred ccCCCCCCCC--CCcceEEecCHHHHHHhh---hCCcEEEEEEeC-Cccee---ecHHHHHHHHHc
Q psy10228 67 TTRARREYEV--DGRDYHFVSSREQMEKDI---QNHLFIEAGQYN-DNLYG---TSVASVRDVAEK 123 (225)
Q Consensus 67 TTRp~R~~E~--dG~dY~FV~s~eef~~~i---~~~~FiE~~~~~-gn~YG---Ts~~sV~~v~~~ 123 (225)
+|+.|-.|++ ||+|..=+ +.+.+.+.| .+.-++-.+... +-.|| .+.++|.++++.
T Consensus 1270 ~~~~~~~G~I~idG~di~~~-~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~ 1334 (1466)
T PTZ00265 1270 STVFKNSGKILLDGVDICDY-NLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKF 1334 (1466)
T ss_pred cccCCCCCeEEECCEEHHhC-CHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHH
Confidence 4566677776 88886666 666666554 333444333332 23466 466777777654
No 229
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=86.15 E-value=0.31 Score=40.91 Aligned_cols=13 Identities=0% Similarity=-0.033 Sum_probs=12.3
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.|+|+||+|||||
T Consensus 3 lilI~GptGSGKT 15 (198)
T cd01131 3 LVLVTGPTGSGKS 15 (198)
T ss_pred EEEEECCCCCCHH
Confidence 6899999999999
No 230
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=86.10 E-value=0.27 Score=37.34 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=10.8
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+..++|+||+|+|||
T Consensus 4 ~~~~~i~G~~G~GKT 18 (131)
T PF13401_consen 4 QRILVISGPPGSGKT 18 (131)
T ss_dssp ---EEEEE-TTSSHH
T ss_pred CcccEEEcCCCCCHH
Confidence 457999999999999
No 231
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=85.89 E-value=0.45 Score=43.55 Aligned_cols=19 Identities=16% Similarity=-0.013 Sum_probs=16.5
Q ss_pred CCCCCccEEEEccCCCCCC
Q psy10228 46 DGSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 46 ~~~~~~~ivl~GpsgsGK~ 64 (225)
+-.+++++.|.||||||||
T Consensus 24 ~i~~Ge~vaLlGpSGaGKs 42 (345)
T COG1118 24 DIKSGELVALLGPSGAGKS 42 (345)
T ss_pred eecCCcEEEEECCCCCcHH
Confidence 3446789999999999999
No 232
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=85.72 E-value=3.7 Score=38.80 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=25.1
Q ss_pred HHHHHcCCeEEEEc--cHHHHH----HHHhhccCCeEEEEecCCHHHHHH
Q psy10228 118 RDVAEKGKHCILDV--SGNAIK----RLQVASLYPVAIFIKPKSVESIME 161 (225)
Q Consensus 118 ~~v~~~gk~~ildv--~~~gvk----~L~~~~~~Pi~IFI~pps~~~L~~ 161 (225)
....+.|+.+|+-. .+..+. +|..+-....++.|.||+.+.+..
T Consensus 238 n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 238 NALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred HHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 34556777766643 333332 233221123678899999877765
No 233
>PRK12288 GTPase RsgA; Reviewed
Probab=85.59 E-value=0.35 Score=44.54 Aligned_cols=14 Identities=0% Similarity=-0.166 Sum_probs=12.8
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|+|+||+|||
T Consensus 206 ki~~~vG~sgVGKS 219 (347)
T PRK12288 206 RISIFVGQSGVGKS 219 (347)
T ss_pred CCEEEECCCCCCHH
Confidence 46899999999999
No 234
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.56 E-value=6.4 Score=37.81 Aligned_cols=13 Identities=8% Similarity=0.235 Sum_probs=11.9
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++++||+|+|||
T Consensus 38 ~~Lf~GPpGtGKT 50 (472)
T PRK14962 38 AYIFAGPRGTGKT 50 (472)
T ss_pred EEEEECCCCCCHH
Confidence 3799999999999
No 235
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=85.46 E-value=0.32 Score=36.65 Aligned_cols=12 Identities=17% Similarity=0.099 Sum_probs=11.4
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+|.||+|+|||
T Consensus 1 ill~G~~G~GKT 12 (132)
T PF00004_consen 1 ILLHGPPGTGKT 12 (132)
T ss_dssp EEEESSTTSSHH
T ss_pred CEEECcCCCCee
Confidence 689999999999
No 236
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=85.34 E-value=9.4 Score=37.37 Aligned_cols=13 Identities=8% Similarity=0.209 Sum_probs=11.8
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++++||.|+||+
T Consensus 38 ayLf~Gp~G~GKT 50 (535)
T PRK08451 38 AYLFSGLRGSGKT 50 (535)
T ss_pred eEEEECCCCCcHH
Confidence 4689999999998
No 237
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=85.30 E-value=0.37 Score=38.43 Aligned_cols=27 Identities=11% Similarity=0.028 Sum_probs=20.9
Q ss_pred CccEEEEccCCCCCC-----------------CcccCCCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT-----------------EDTTRARREYEV 76 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~ 76 (225)
...++++|.+++||+ ++|||.+.....
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~ 143 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL 143 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe
Confidence 456899999999999 678887755433
No 238
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=85.28 E-value=0.38 Score=33.51 Aligned_cols=13 Identities=0% Similarity=-0.036 Sum_probs=12.3
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
..+|+||+|||||
T Consensus 25 ~tli~G~nGsGKS 37 (62)
T PF13555_consen 25 VTLITGPNGSGKS 37 (62)
T ss_pred EEEEECCCCCCHH
Confidence 6899999999999
No 239
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=85.24 E-value=8.5 Score=37.84 Aligned_cols=13 Identities=8% Similarity=0.151 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.+++.||.|.||+
T Consensus 40 ayLf~Gp~G~GKT 52 (563)
T PRK06647 40 AYIFSGPRGVGKT 52 (563)
T ss_pred EEEEECCCCCCHH
Confidence 5799999999998
No 240
>KOG3877|consensus
Probab=85.17 E-value=2.1 Score=38.92 Aligned_cols=58 Identities=12% Similarity=0.385 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCeEEEEccHHH----HHHHH-----------------h---hcc-CC-eEEEEecCCHHHHHHHhccCC
Q psy10228 114 VASVRDVAEKGKHCILDVSGNA----IKRLQ-----------------V---ASL-YP-VAIFIKPKSVESIMEMNKRMT 167 (225)
Q Consensus 114 ~~sV~~v~~~gk~~ildv~~~g----vk~L~-----------------~---~~~-~P-i~IFI~pps~~~L~~L~~R~s 167 (225)
.++++-++..|+-++|+-++-. +.++. . .++ .| .+|||..|--++++++.+|+.
T Consensus 161 ~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv~~v~~~Ik~rg~ 240 (393)
T KOG3877|consen 161 LDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPVNKVLENIKRRGN 240 (393)
T ss_pred HHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCcHHHHHHHHhcCC
Confidence 5678888999999999876521 11111 1 122 34 899999998888888999986
Q ss_pred HHHH
Q psy10228 168 EEQA 171 (225)
Q Consensus 168 eeei 171 (225)
..++
T Consensus 241 ~~Ei 244 (393)
T KOG3877|consen 241 TDEI 244 (393)
T ss_pred Ccce
Confidence 4444
No 241
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.71 E-value=11 Score=37.00 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++|+||+|+||+
T Consensus 40 a~Lf~Gp~G~GKT 52 (585)
T PRK14950 40 AYLFTGPRGVGKT 52 (585)
T ss_pred EEEEECCCCCCHH
Confidence 4799999999999
No 242
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=84.57 E-value=0.81 Score=36.27 Aligned_cols=14 Identities=7% Similarity=0.055 Sum_probs=12.6
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-++|+||+|+|||
T Consensus 15 ~~v~i~G~~g~GKS 28 (173)
T cd04155 15 PRILILGLDNAGKT 28 (173)
T ss_pred cEEEEEccCCCCHH
Confidence 34899999999999
No 243
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=84.55 E-value=13 Score=30.19 Aligned_cols=53 Identities=25% Similarity=0.321 Sum_probs=30.7
Q ss_pred HHHHHHHHcCCeEEEEcc---------------HHHHHHHHhhcc--CC-eEEEEecCCHHHHHHHhccCC
Q psy10228 115 ASVRDVAEKGKHCILDVS---------------GNAIKRLQVASL--YP-VAIFIKPKSVESIMEMNKRMT 167 (225)
Q Consensus 115 ~sV~~v~~~gk~~ildv~---------------~~gvk~L~~~~~--~P-i~IFI~pps~~~L~~L~~R~s 167 (225)
..|...+++|.++|+|-- ...+..+...-. .| ++||+..+-...++++..|..
T Consensus 71 ~~I~~~l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~ 141 (186)
T PF02223_consen 71 RVIRPALKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGE 141 (186)
T ss_dssp HTHHHHHHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSS
T ss_pred HHHHHHHcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCc
Confidence 456677888999999841 223333332222 66 778888764444555665553
No 244
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=84.17 E-value=0.52 Score=39.38 Aligned_cols=15 Identities=13% Similarity=-0.091 Sum_probs=13.4
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
++++-|+|||||||+
T Consensus 28 GeivtlMGPSGcGKS 42 (213)
T COG4136 28 GEIVTLMGPSGCGKS 42 (213)
T ss_pred CcEEEEECCCCccHH
Confidence 467889999999999
No 245
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=84.16 E-value=0.4 Score=37.20 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
+++|.||+|+|||
T Consensus 1 ~vlL~G~~G~GKt 13 (139)
T PF07728_consen 1 PVLLVGPPGTGKT 13 (139)
T ss_dssp EEEEEESSSSSHH
T ss_pred CEEEECCCCCCHH
Confidence 4899999999999
No 246
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=84.12 E-value=8.9 Score=36.54 Aligned_cols=13 Identities=8% Similarity=0.215 Sum_probs=11.9
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-+++.||+|+||+
T Consensus 41 a~Lf~Gp~G~GKt 53 (451)
T PRK06305 41 AYLFSGIRGTGKT 53 (451)
T ss_pred EEEEEcCCCCCHH
Confidence 5789999999998
No 247
>PF05729 NACHT: NACHT domain
Probab=84.08 E-value=0.55 Score=36.70 Aligned_cols=14 Identities=0% Similarity=-0.026 Sum_probs=13.0
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
++++|+|++|+|||
T Consensus 1 r~l~I~G~~G~GKS 14 (166)
T PF05729_consen 1 RVLWISGEPGSGKS 14 (166)
T ss_pred CEEEEECCCCCChH
Confidence 57899999999999
No 248
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=84.07 E-value=0.47 Score=39.05 Aligned_cols=14 Identities=0% Similarity=-0.090 Sum_probs=12.9
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++++|.+|+|||
T Consensus 128 ~~~~~~G~~nvGKS 141 (190)
T cd01855 128 GDVYVVGATNVGKS 141 (190)
T ss_pred CcEEEEcCCCCCHH
Confidence 46899999999999
No 249
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=84.07 E-value=7.3 Score=37.58 Aligned_cols=13 Identities=8% Similarity=0.020 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.|+|+|++|||||
T Consensus 2 ~I~l~G~~GsGKS 14 (488)
T PRK13951 2 RIFLVGMMGSGKS 14 (488)
T ss_pred eEEEECCCCCCHH
Confidence 3899999999999
No 250
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=83.97 E-value=8 Score=37.89 Aligned_cols=14 Identities=7% Similarity=0.225 Sum_probs=12.5
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++++||.|.||+
T Consensus 39 hayLf~Gp~GtGKT 52 (559)
T PRK05563 39 HAYLFSGPRGTGKT 52 (559)
T ss_pred eEEEEECCCCCCHH
Confidence 46789999999998
No 251
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=83.93 E-value=8.5 Score=31.47 Aligned_cols=13 Identities=0% Similarity=0.107 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++|.||+|.||+
T Consensus 16 ~~L~~G~~G~gkt 28 (188)
T TIGR00678 16 AYLFAGPEGVGKE 28 (188)
T ss_pred EEEEECCCCCCHH
Confidence 5899999999998
No 252
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=83.90 E-value=0.49 Score=40.69 Aligned_cols=15 Identities=13% Similarity=0.005 Sum_probs=13.9
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
++++.|+||||+|||
T Consensus 28 Gef~fl~GpSGAGKS 42 (223)
T COG2884 28 GEFVFLTGPSGAGKS 42 (223)
T ss_pred ceEEEEECCCCCCHH
Confidence 568999999999999
No 253
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=83.81 E-value=0.5 Score=39.23 Aligned_cols=15 Identities=0% Similarity=-0.079 Sum_probs=13.9
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
.+.++|+||||||||
T Consensus 21 G~~~~l~G~nG~GKS 35 (176)
T cd03238 21 NVLVVVTGVSGSGKS 35 (176)
T ss_pred CCEEEEECCCCCCHH
Confidence 568999999999999
No 254
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=83.76 E-value=0.52 Score=41.22 Aligned_cols=15 Identities=7% Similarity=-0.146 Sum_probs=13.4
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..+..|+||||||||
T Consensus 33 ~~VTAlIGPSGcGKS 47 (253)
T COG1117 33 NKVTALIGPSGCGKS 47 (253)
T ss_pred CceEEEECCCCcCHH
Confidence 357899999999999
No 255
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=83.67 E-value=0.4 Score=40.48 Aligned_cols=35 Identities=6% Similarity=0.052 Sum_probs=21.6
Q ss_pred CcEEE-ECCCHHHHHHHHHHHHHhccCCceeeeCCC
Q psy10228 189 FTAVV-QGDMPEDIYQKVKEVIQEQSGPSIWVPSKD 223 (225)
Q Consensus 189 fd~vI-~Nddleea~~~lk~iI~~~~~~~~WVp~~~ 223 (225)
++.+| .-=|-...+..+..++....-|..|+-..+
T Consensus 142 ~~~lIlTKlDet~~~G~~l~~~~~~~~Pi~~it~Gq 177 (196)
T PF00448_consen 142 IDGLILTKLDETARLGALLSLAYESGLPISYITTGQ 177 (196)
T ss_dssp TCEEEEESTTSSSTTHHHHHHHHHHTSEEEEEESSS
T ss_pred CceEEEEeecCCCCcccceeHHHHhCCCeEEEECCC
Confidence 45544 443545566777777777777777766554
No 256
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=83.43 E-value=0.78 Score=37.95 Aligned_cols=12 Identities=8% Similarity=0.099 Sum_probs=11.6
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+|+|.+|+|||
T Consensus 3 i~lvG~~g~GKS 14 (196)
T cd01852 3 LVLVGKTGAGKS 14 (196)
T ss_pred EEEECCCCCCHH
Confidence 899999999999
No 257
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=83.41 E-value=0.47 Score=42.16 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=14.5
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
..++++|+||+|+||+
T Consensus 32 ~~~pvLl~G~~GtGKT 47 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKT 47 (272)
T ss_dssp CTEEEEEESSTTSSHH
T ss_pred cCCcEEEECCCCCchh
Confidence 3679999999999999
No 258
>KOG0991|consensus
Probab=83.16 E-value=4 Score=36.43 Aligned_cols=48 Identities=10% Similarity=0.193 Sum_probs=30.8
Q ss_pred ccCCHHHHHHHHHHHHHHHH-hhC-CCCcEEEEC--CCHHHHHHHHHHHHHh
Q psy10228 164 KRMTEEQAKKMYDRSMKMEQ-EFG-EFFTAVVQG--DMPEDIYQKVKEVIQE 211 (225)
Q Consensus 164 ~R~seeei~~rl~~a~k~E~-~~~-~~fd~vI~N--ddleea~~~lk~iI~~ 211 (225)
.|+++.++-+|+....+.|. .|- +..+++|-- .|+-++++.|+..+..
T Consensus 170 sklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g 221 (333)
T KOG0991|consen 170 SKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNG 221 (333)
T ss_pred cccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhcc
Confidence 35678898888776655443 232 234455542 3788999999887754
No 259
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=83.11 E-value=2.1 Score=37.63 Aligned_cols=94 Identities=16% Similarity=0.062 Sum_probs=55.0
Q ss_pred hhccccceeecccccccccCCCCCCCC-------------------CCccEEEEccCCCCCC----CcccCCCCCCCCCC
Q psy10228 22 ERKKKNFSFSRKFPFMKSKDDKSEDGS-------------------DQEPFMLCYTQDDPTT----EDTTRARREYEVDG 78 (225)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~ivl~GpsgsGK~----s~TTRp~R~~E~dG 78 (225)
.++......+..||..++-+..+=+.. ...-++|.||+|+||| ...-+-. ..|
T Consensus 58 ~r~~~~~~~~a~~p~~k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~----~~g 133 (254)
T COG1484 58 ARKIERRLRSASFPAKKTFEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL----KAG 133 (254)
T ss_pred HHHHHHHHHHhcCCccCCcccccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH----HcC
Confidence 344466667778888765443211111 1236899999999999 1100110 126
Q ss_pred cceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEE
Q psy10228 79 RDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILD 130 (225)
Q Consensus 79 ~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ild 130 (225)
..=.|+ +-.+|-..+++. ..+|+....+...+.+=...|||
T Consensus 134 ~sv~f~-~~~el~~~Lk~~----------~~~~~~~~~l~~~l~~~dlLIiD 174 (254)
T COG1484 134 ISVLFI-TAPDLLSKLKAA----------FDEGRLEEKLLRELKKVDLLIID 174 (254)
T ss_pred CeEEEE-EHHHHHHHHHHH----------HhcCchHHHHHHHhhcCCEEEEe
Confidence 666788 455555555432 23488888888866666666665
No 260
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.09 E-value=16 Score=36.14 Aligned_cols=97 Identities=18% Similarity=0.331 Sum_probs=47.6
Q ss_pred cHHHHHHHH---------HcCCeEEEE----ccHHHHHHHHh-hccCC---eEEEEecCCHHHHH-HHhccC--------
Q psy10228 113 SVASVRDVA---------EKGKHCILD----VSGNAIKRLQV-ASLYP---VAIFIKPKSVESIM-EMNKRM-------- 166 (225)
Q Consensus 113 s~~sV~~v~---------~~gk~~ild----v~~~gvk~L~~-~~~~P---i~IFI~pps~~~L~-~L~~R~-------- 166 (225)
.++.|+++. ...|++|+| ++..+...|.+ .+-.| +.||+. ...+.|- .++.|.
T Consensus 99 gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~t-te~~kll~TI~SRc~~~~F~~l 177 (584)
T PRK14952 99 GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFAT-TEPEKVLPTIRSRTHHYPFRLL 177 (584)
T ss_pred CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEe-CChHhhHHHHHHhceEEEeeCC
Confidence 466666554 235677776 34555555543 34444 445544 3334443 366553
Q ss_pred CHHHHHHHHHHHHHHHH-hhCC-CCcEE--EECCCHHHHHHHHHHHHH
Q psy10228 167 TEEQAKKMYDRSMKMEQ-EFGE-FFTAV--VQGDMPEDIYQKVKEVIQ 210 (225)
Q Consensus 167 seeei~~rl~~a~k~E~-~~~~-~fd~v--I~Nddleea~~~lk~iI~ 210 (225)
+.+++.+++.+..+.|- .+.. ...++ ..+.++-.+.+.|..++.
T Consensus 178 ~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 178 PPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 57777777766432221 0000 01111 124466666666666554
No 261
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=83.05 E-value=0.86 Score=43.60 Aligned_cols=46 Identities=9% Similarity=-0.059 Sum_probs=29.9
Q ss_pred CCCCccEEEEccCCCCCC-----CcccCCCCCCCC--CCcceEEecCHHHHHHh
Q psy10228 47 GSDQEPFMLCYTQDDPTT-----EDTTRARREYEV--DGRDYHFVSSREQMEKD 93 (225)
Q Consensus 47 ~~~~~~ivl~GpsgsGK~-----s~TTRp~R~~E~--dG~dY~FV~s~eef~~~ 93 (225)
-..++.+.|+|||||||| =.---+|-.|++ ||.+..=+ +.+++.+.
T Consensus 345 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~-~~~~lr~~ 397 (529)
T TIGR02857 345 VPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADA-DADSWRDQ 397 (529)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhC-CHHHHHhh
Confidence 344678999999999999 111224555665 77776555 55555544
No 262
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=83.01 E-value=0.44 Score=38.18 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=9.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
.....++|.|++|+|||
T Consensus 22 ~~~~~~ll~G~~G~GKT 38 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKT 38 (185)
T ss_dssp -----EEE-B-TTSSHH
T ss_pred CCCcEEEEECCCCCCHH
Confidence 33578999999999999
No 263
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=82.96 E-value=0.52 Score=36.26 Aligned_cols=15 Identities=7% Similarity=-0.006 Sum_probs=13.8
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
++.++|+||+|||||
T Consensus 11 g~~~~i~G~nGsGKS 25 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKS 25 (137)
T ss_dssp TSEEEEEESTTSSHH
T ss_pred CCEEEEEccCCCccc
Confidence 568999999999999
No 264
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=82.65 E-value=0.7 Score=36.40 Aligned_cols=13 Identities=0% Similarity=0.008 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 2 ~i~~~G~~~~GKs 14 (168)
T cd01897 2 TLVIAGYPNVGKS 14 (168)
T ss_pred eEEEEcCCCCCHH
Confidence 4899999999999
No 265
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=82.64 E-value=0.65 Score=40.32 Aligned_cols=15 Identities=13% Similarity=-0.075 Sum_probs=13.8
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
.+.+|+.|||||||+
T Consensus 31 ge~vv~lGpSGcGKT 45 (259)
T COG4525 31 GELVVVLGPSGCGKT 45 (259)
T ss_pred CCEEEEEcCCCccHH
Confidence 568999999999999
No 266
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=82.59 E-value=0.72 Score=38.87 Aligned_cols=15 Identities=0% Similarity=0.060 Sum_probs=14.0
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+++++|+||+|+|||
T Consensus 25 g~~~~ltGpNg~GKS 39 (199)
T cd03283 25 KNGILITGSNMSGKS 39 (199)
T ss_pred CcEEEEECCCCCChH
Confidence 479999999999999
No 267
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=82.39 E-value=0.59 Score=45.21 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=44.2
Q ss_pred CCccEEEEccCCCCCCCcccC-----CCCCCC--CCCcceEEecCHHHHHHhhh---CCcEEEEEEe-CCccee---ecH
Q psy10228 49 DQEPFMLCYTQDDPTTEDTTR-----ARREYE--VDGRDYHFVSSREQMEKDIQ---NHLFIEAGQY-NDNLYG---TSV 114 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~s~TTR-----p~R~~E--~dG~dY~FV~s~eef~~~i~---~~~FiE~~~~-~gn~YG---Ts~ 114 (225)
.++.+.|+||||||||+...= +|..|+ +||.|-.=+ +.+...+.|. +.-++-.+.. .+-.|| .+.
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i-~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~ 432 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI-SLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATD 432 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhc-CHHHHHHhccEEcccceeecccHHHHHhcCCCCCCH
Confidence 356788999999999811111 123333 368876666 7777777664 2233323333 344677 455
Q ss_pred HHHHHHHHc
Q psy10228 115 ASVRDVAEK 123 (225)
Q Consensus 115 ~sV~~v~~~ 123 (225)
++|.++++.
T Consensus 433 eei~~a~k~ 441 (567)
T COG1132 433 EEIEEALKL 441 (567)
T ss_pred HHHHHHHHH
Confidence 777777754
No 268
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=82.34 E-value=11 Score=37.94 Aligned_cols=14 Identities=14% Similarity=-0.071 Sum_probs=12.5
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-++|+||+|+|||
T Consensus 204 ~n~lL~G~pG~GKT 217 (731)
T TIGR02639 204 NNPLLVGEPGVGKT 217 (731)
T ss_pred CceEEECCCCCCHH
Confidence 35899999999999
No 269
>PRK13342 recombination factor protein RarA; Reviewed
Probab=82.23 E-value=16 Score=34.13 Aligned_cols=13 Identities=15% Similarity=0.117 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++|.||+|+|||
T Consensus 38 ~ilL~GppGtGKT 50 (413)
T PRK13342 38 SMILWGPPGTGKT 50 (413)
T ss_pred eEEEECCCCCCHH
Confidence 5889999999999
No 270
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=82.20 E-value=12 Score=34.03 Aligned_cols=13 Identities=8% Similarity=0.038 Sum_probs=11.9
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-+++.||+|+||+
T Consensus 24 a~Lf~G~~G~GK~ 36 (328)
T PRK05707 24 AYLLHGPAGIGKR 36 (328)
T ss_pred eeeeECCCCCCHH
Confidence 5789999999998
No 271
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=82.07 E-value=0.77 Score=37.09 Aligned_cols=31 Identities=10% Similarity=0.093 Sum_probs=20.0
Q ss_pred cccccccccCCCCCCCCCCccEEEEccCCCCCC
Q psy10228 32 RKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~ 64 (225)
+.||.|-..... ...+....+|+||.|||||
T Consensus 5 ~~~~~~~~~~~i--~~~~~~~~~i~G~NgsGKS 35 (162)
T cd03227 5 GRFPSYFVPNDV--TFGEGSLTIITGPNGSGKS 35 (162)
T ss_pred CCCCEEEeccEE--ecCCCCEEEEECCCCCCHH
Confidence 567776322111 1222368999999999999
No 272
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=82.06 E-value=0.6 Score=42.42 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=40.9
Q ss_pred ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEe-CCcceeecHHHHHHHHHcCCeEEE
Q psy10228 51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQY-NDNLYGTSVASVRDVAEKGKHCIL 129 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~-~gn~YGTs~~sV~~v~~~gk~~il 129 (225)
.=++|+|+||+|||..+..-...| |.|| + ++-+.-... +|.++|.+.+.++..++---.-|+
T Consensus 147 ~gvli~G~sg~GKS~lal~Li~rg------~~lv-a----------DD~~~~~~~~~~~L~g~~p~~l~~~iEvRG~GIi 209 (304)
T TIGR00679 147 VGVLITGKSGVGKSETALELINRG------HRLV-A----------DDAVEIYRLNGNRLFGRAQELIKHFMEIRGLGII 209 (304)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC------Ccee-e----------cCeEEEEEecCCEEEEeCChhhCCcEEEeCcEEE
Confidence 468999999999994443222111 3466 3 234555556 567888888877766665445556
Q ss_pred Ecc
Q psy10228 130 DVS 132 (225)
Q Consensus 130 dv~ 132 (225)
|+.
T Consensus 210 ~v~ 212 (304)
T TIGR00679 210 NVE 212 (304)
T ss_pred Ech
Confidence 654
No 273
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=82.04 E-value=5.9 Score=38.60 Aligned_cols=116 Identities=19% Similarity=0.178 Sum_probs=69.6
Q ss_pred EEEEccCCCCCC----------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHH
Q psy10228 53 FMLCYTQDDPTT----------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAE 122 (225)
Q Consensus 53 ivl~GpsgsGK~----------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~ 122 (225)
.+++||-|+||| -|++.+ ++-++ ..=..=+.|..|.++.--++.+ -+-+.++.|+++.+
T Consensus 41 YlfsG~RGvGKTt~Ari~AkalNC~~~~---------~~ePC-~~C~~Ck~I~~g~~~DviEiDa-ASn~gVddiR~i~e 109 (515)
T COG2812 41 YLFSGPRGVGKTTIARILAKALNCENGP---------TAEPC-GKCISCKEINEGSLIDVIEIDA-ASNTGVDDIREIIE 109 (515)
T ss_pred hhhcCCCCcCchhHHHHHHHHhcCCCCC---------CCCcc-hhhhhhHhhhcCCcccchhhhh-hhccChHHHHHHHH
Confidence 589999999999 344441 11122 2333446788888877776654 34458999999987
Q ss_pred c---------CCeEEEE----ccHHHHHHHHh-hccCC-eEEEEecCC-HH-----HHHH----HhccCCHHHHHHHHHH
Q psy10228 123 K---------GKHCILD----VSGNAIKRLQV-ASLYP-VAIFIKPKS-VE-----SIME----MNKRMTEEQAKKMYDR 177 (225)
Q Consensus 123 ~---------gk~~ild----v~~~gvk~L~~-~~~~P-i~IFI~pps-~~-----~L~~----L~~R~seeei~~rl~~ 177 (225)
+ -|+.|+| ++.++...|-+ -+--| .++||-... .. .|=+ --+|++.++|..+|+.
T Consensus 110 ~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~ 189 (515)
T COG2812 110 KVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAA 189 (515)
T ss_pred HhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHH
Confidence 5 4566776 35566555544 23334 667765432 11 1111 1256677888877777
Q ss_pred HH
Q psy10228 178 SM 179 (225)
Q Consensus 178 a~ 179 (225)
..
T Consensus 190 i~ 191 (515)
T COG2812 190 IL 191 (515)
T ss_pred HH
Confidence 54
No 274
>KOG1533|consensus
Probab=81.68 E-value=0.74 Score=40.78 Aligned_cols=17 Identities=6% Similarity=-0.015 Sum_probs=14.6
Q ss_pred EEEEccCCCCCC----------CcccC
Q psy10228 53 FMLCYTQDDPTT----------EDTTR 69 (225)
Q Consensus 53 ivl~GpsgsGK~----------s~TTR 69 (225)
.+++||+||||| +++-|
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr 31 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGR 31 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCC
Confidence 378999999999 77777
No 275
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.46 E-value=9.8 Score=35.42 Aligned_cols=13 Identities=8% Similarity=0.066 Sum_probs=11.9
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-+++.||+|+||+
T Consensus 40 a~lf~Gp~G~GKt 52 (397)
T PRK14955 40 GYIFSGLRGVGKT 52 (397)
T ss_pred eEEEECCCCCCHH
Confidence 4789999999999
No 276
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=81.43 E-value=0.77 Score=40.64 Aligned_cols=15 Identities=0% Similarity=-0.223 Sum_probs=13.8
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..+++|+|+||||||
T Consensus 21 g~~~~vtGvSGsGKS 35 (261)
T cd03271 21 GVLTCVTGVSGSGKS 35 (261)
T ss_pred CcEEEEECCCCCchH
Confidence 468999999999999
No 277
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=81.27 E-value=3.7 Score=34.38 Aligned_cols=12 Identities=25% Similarity=0.221 Sum_probs=11.6
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+|+||+|||||
T Consensus 3 vll~G~~~sGKT 14 (203)
T cd04105 3 VLLLGPSDSGKT 14 (203)
T ss_pred EEEEcCCCCCHH
Confidence 799999999999
No 278
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=81.11 E-value=0.84 Score=39.32 Aligned_cols=12 Identities=8% Similarity=-0.147 Sum_probs=11.4
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
++|+|++|+|||
T Consensus 3 v~lvG~~~~GKS 14 (233)
T cd01896 3 VALVGFPSVGKS 14 (233)
T ss_pred EEEECCCCCCHH
Confidence 789999999999
No 279
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=81.08 E-value=0.79 Score=38.41 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 27 ~~Ge~~~i~G~nGsGKS 43 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKS 43 (216)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 280
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=80.96 E-value=0.83 Score=38.63 Aligned_cols=16 Identities=13% Similarity=-0.008 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 12 ~Ge~~~l~G~NGsGKS 27 (213)
T PRK15177 12 YHEHIGILAAPGSGKT 27 (213)
T ss_pred CCCEEEEECCCCCCHH
Confidence 3578999999999999
No 281
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=80.82 E-value=0.29 Score=52.14 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=30.5
Q ss_pred ccceeecccccccccCCCCCCCCCCccEEEEccCCCCCC
Q psy10228 26 KNFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~ 64 (225)
..+.|....|-++.++..-+.-.....+||+|++|||||
T Consensus 65 p~~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKT 103 (1294)
T PRK11131 65 PEITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKT 103 (1294)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHH
Confidence 467888889988887754444444568999999999999
No 282
>PF13245 AAA_19: Part of AAA domain
Probab=80.76 E-value=0.85 Score=32.66 Aligned_cols=15 Identities=13% Similarity=0.056 Sum_probs=12.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
....+|.||+|+|||
T Consensus 10 ~~~~vv~g~pGtGKT 24 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKT 24 (76)
T ss_pred CCeEEEECCCCCCHH
Confidence 346778999999999
No 283
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=80.63 E-value=0.84 Score=37.52 Aligned_cols=16 Identities=13% Similarity=0.032 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 17 ~Ge~~~i~G~nGsGKS 32 (190)
T TIGR01166 17 RGEVLALLGANGAGKS 32 (190)
T ss_pred CCCEEEEECCCCCCHH
Confidence 3568999999999999
No 284
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=80.56 E-value=0.75 Score=39.31 Aligned_cols=18 Identities=0% Similarity=0.015 Sum_probs=15.3
Q ss_pred CCCccEEEEccCCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTTE 65 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~s 65 (225)
...+.+.|+||||||||+
T Consensus 19 ~~Ge~~~l~G~sGsGKST 36 (226)
T cd03270 19 PRNKLVVITGVSGSGKSS 36 (226)
T ss_pred CCCcEEEEEcCCCCCHHH
Confidence 346799999999999993
No 285
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=80.55 E-value=0.78 Score=35.20 Aligned_cols=13 Identities=0% Similarity=-0.021 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+++|++|+|||
T Consensus 3 ~i~l~G~~~~GKs 15 (157)
T cd04164 3 KVVIVGKPNVGKS 15 (157)
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 286
>PTZ00202 tuzin; Provisional
Probab=80.41 E-value=3.1 Score=40.27 Aligned_cols=15 Identities=0% Similarity=-0.153 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
.++++|+||+|+|||
T Consensus 286 privvLtG~~G~GKT 300 (550)
T PTZ00202 286 PRIVVFTGFRGCGKS 300 (550)
T ss_pred ceEEEEECCCCCCHH
Confidence 468899999999999
No 287
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=80.40 E-value=0.77 Score=35.21 Aligned_cols=14 Identities=0% Similarity=-0.175 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..|+++|++|||||
T Consensus 4 ~~i~~~G~~g~GKt 17 (168)
T cd04163 4 GFVAIVGRPNVGKS 17 (168)
T ss_pred eEEEEECCCCCCHH
Confidence 45899999999998
No 288
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=80.36 E-value=0.85 Score=38.27 Aligned_cols=17 Identities=24% Similarity=0.038 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 26 ~~Ge~~~i~G~nGsGKS 42 (220)
T cd03263 26 YKGEIFGLLGHNGAGKT 42 (220)
T ss_pred cCCcEEEEECCCCCCHH
Confidence 34678999999999999
No 289
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=80.23 E-value=0.87 Score=37.98 Aligned_cols=16 Identities=13% Similarity=0.009 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 26 ~G~~~~i~G~nGsGKS 41 (214)
T cd03292 26 AGEFVFLVGPSGAGKS 41 (214)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4568999999999999
No 290
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=80.09 E-value=7.5 Score=34.06 Aligned_cols=13 Identities=8% Similarity=0.020 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.+++.||+|+||+
T Consensus 26 alL~~Gp~G~Gkt 38 (325)
T COG0470 26 ALLFYGPPGVGKT 38 (325)
T ss_pred eeeeeCCCCCCHH
Confidence 4899999999998
No 291
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.06 E-value=14 Score=36.65 Aligned_cols=14 Identities=14% Similarity=0.427 Sum_probs=12.4
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..+++.||.|+||+
T Consensus 40 hayLf~Gp~G~GKt 53 (614)
T PRK14971 40 HAYLFCGPRGVGKT 53 (614)
T ss_pred eeEEEECCCCCCHH
Confidence 35799999999998
No 292
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=80.06 E-value=1.1 Score=36.20 Aligned_cols=14 Identities=7% Similarity=0.055 Sum_probs=12.6
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|+|+|++|||||
T Consensus 20 ~ki~ilG~~~~GKS 33 (190)
T cd00879 20 AKILFLGLDNAGKT 33 (190)
T ss_pred CEEEEECCCCCCHH
Confidence 45799999999999
No 293
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=79.99 E-value=0.9 Score=38.73 Aligned_cols=17 Identities=6% Similarity=-0.072 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 26 ~~Ge~~~l~G~nGsGKS 42 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKS 42 (243)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 294
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=79.99 E-value=0.83 Score=37.73 Aligned_cols=15 Identities=7% Similarity=0.113 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|+||+|||||
T Consensus 25 g~~i~I~G~tGSGKT 39 (186)
T cd01130 25 RKNILISGGTGSGKT 39 (186)
T ss_pred CCEEEEECCCCCCHH
Confidence 468999999999999
No 295
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=79.94 E-value=0.7 Score=38.14 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++++||||+||+
T Consensus 5 ~~ll~GpsGvGKT 17 (171)
T PF07724_consen 5 NFLLAGPSGVGKT 17 (171)
T ss_dssp EEEEESSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5799999999999
No 296
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=79.82 E-value=0.87 Score=38.20 Aligned_cols=17 Identities=18% Similarity=0.048 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 24 ~~Ge~~~i~G~nGsGKS 40 (222)
T cd03224 24 PEGEIVALLGRNGAGKT 40 (222)
T ss_pred cCCeEEEEECCCCCCHH
Confidence 34678999999999999
No 297
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=79.73 E-value=0.85 Score=35.22 Aligned_cols=13 Identities=8% Similarity=0.008 Sum_probs=11.8
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++|+||+|+|||
T Consensus 1 ~~~i~G~~G~GKT 13 (165)
T cd01120 1 LILVFGPTGSGKT 13 (165)
T ss_pred CeeEeCCCCCCHH
Confidence 3689999999999
No 298
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=79.70 E-value=18 Score=32.34 Aligned_cols=13 Identities=8% Similarity=0.232 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++|.||+|+||+
T Consensus 38 ~~Ll~G~~G~GKt 50 (355)
T TIGR02397 38 AYLFSGPRGTGKT 50 (355)
T ss_pred EEEEECCCCCCHH
Confidence 5789999999998
No 299
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=79.48 E-value=0.95 Score=37.81 Aligned_cols=17 Identities=18% Similarity=0.067 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 26 ~~G~~~~l~G~nGsGKS 42 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKT 42 (214)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34578999999999999
No 300
>COG0645 Predicted kinase [General function prediction only]
Probab=79.48 E-value=32 Score=28.75 Aligned_cols=14 Identities=0% Similarity=-0.095 Sum_probs=12.6
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
+++++.|-+|+||+
T Consensus 2 ~l~l~~Gl~GsGKs 15 (170)
T COG0645 2 RLVLVGGLPGSGKS 15 (170)
T ss_pred eEEEEecCCCccHh
Confidence 46899999999998
No 301
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=79.38 E-value=1.1 Score=37.59 Aligned_cols=16 Identities=6% Similarity=-0.016 Sum_probs=14.2
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
...+++|.||+|+|||
T Consensus 37 ~~~~lll~G~~G~GKT 52 (226)
T TIGR03420 37 GDRFLYLWGESGSGKS 52 (226)
T ss_pred CCCeEEEECCCCCCHH
Confidence 3568999999999999
No 302
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.31 E-value=0.97 Score=37.77 Aligned_cols=17 Identities=18% Similarity=-0.070 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 24 ~~Ge~~~i~G~nGsGKS 40 (213)
T cd03259 24 EPGEFLALLGPSGCGKT 40 (213)
T ss_pred cCCcEEEEECCCCCCHH
Confidence 34678999999999999
No 303
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.27 E-value=0.98 Score=38.38 Aligned_cols=17 Identities=12% Similarity=-0.048 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 25 ~~Ge~~~i~G~nGsGKS 41 (241)
T cd03256 25 NPGEFVALIGPSGAGKS 41 (241)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 304
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=79.24 E-value=0.97 Score=37.67 Aligned_cols=16 Identities=6% Similarity=0.052 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 26 ~G~~~~l~G~nGsGKS 41 (211)
T cd03225 26 KGEFVLIVGPNGSGKS 41 (211)
T ss_pred CCcEEEEECCCCCCHH
Confidence 4578999999999999
No 305
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=79.22 E-value=0.93 Score=40.39 Aligned_cols=14 Identities=7% Similarity=-0.057 Sum_probs=13.2
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
+.++++|+||+|||
T Consensus 162 k~~~~~G~sg~GKS 175 (287)
T cd01854 162 KTSVLVGQSGVGKS 175 (287)
T ss_pred ceEEEECCCCCCHH
Confidence 68999999999999
No 306
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=79.22 E-value=0.97 Score=37.60 Aligned_cols=16 Identities=19% Similarity=0.025 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 25 ~Ge~~~i~G~nGsGKS 40 (205)
T cd03226 25 AGEIIALTGKNGAGKT 40 (205)
T ss_pred CCCEEEEECCCCCCHH
Confidence 3568999999999999
No 307
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=79.20 E-value=0.98 Score=37.82 Aligned_cols=16 Identities=6% Similarity=-0.031 Sum_probs=14.5
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 29 ~G~~~~l~G~nGsGKS 44 (218)
T cd03255 29 KGEFVAIVGPSGSGKS 44 (218)
T ss_pred CCCEEEEEcCCCCCHH
Confidence 4678999999999999
No 308
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=79.18 E-value=1 Score=37.58 Aligned_cols=17 Identities=6% Similarity=0.036 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 24 ~~G~~~~l~G~nGsGKS 40 (213)
T cd03262 24 KKGEVVVIIGPSGSGKS 40 (213)
T ss_pred CCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 309
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=79.14 E-value=0.91 Score=39.90 Aligned_cols=13 Identities=8% Similarity=0.051 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-++++|+||||||
T Consensus 15 r~viIG~sGSGKT 27 (241)
T PF04665_consen 15 RMVIIGKSGSGKT 27 (241)
T ss_pred eEEEECCCCCCHH
Confidence 4799999999999
No 310
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=79.12 E-value=0.99 Score=37.74 Aligned_cols=17 Identities=6% Similarity=-0.019 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 23 ~~Ge~~~l~G~nGsGKS 39 (213)
T cd03235 23 KPGEFLAIVGPNGAGKS 39 (213)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 311
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=79.10 E-value=0.97 Score=38.35 Aligned_cols=17 Identities=18% Similarity=-0.076 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 24 ~~Ge~~~l~G~nGsGKS 40 (236)
T cd03219 24 RPGEIHGLIGPNGAGKT 40 (236)
T ss_pred cCCcEEEEECCCCCCHH
Confidence 34678999999999999
No 312
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=79.00 E-value=1 Score=38.90 Aligned_cols=15 Identities=0% Similarity=-0.170 Sum_probs=13.4
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..+.+|+||+|||||
T Consensus 25 ~~~~~IvG~NGsGKS 39 (251)
T cd03273 25 PQFNAITGLNGSGKS 39 (251)
T ss_pred CCeEEEECCCCCCHH
Confidence 457899999999999
No 313
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.95 E-value=1 Score=36.63 Aligned_cols=17 Identities=18% Similarity=0.049 Sum_probs=15.0
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 24 ~~Ge~~~i~G~nGsGKS 40 (173)
T cd03230 24 EKGEIYGLLGPNGAGKT 40 (173)
T ss_pred cCCcEEEEECCCCCCHH
Confidence 44678999999999999
No 314
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.90 E-value=1 Score=38.31 Aligned_cols=17 Identities=6% Similarity=-0.009 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 24 ~~Ge~~~l~G~nGsGKS 40 (235)
T cd03261 24 RRGEILAIIGPSGSGKS 40 (235)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 315
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.88 E-value=1 Score=37.58 Aligned_cols=17 Identities=24% Similarity=0.087 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 24 ~~G~~~~i~G~nGsGKS 40 (210)
T cd03269 24 EKGEIFGLLGPNGAGKT 40 (210)
T ss_pred cCCcEEEEECCCCCCHH
Confidence 34678999999999999
No 316
>PRK08727 hypothetical protein; Validated
Probab=78.76 E-value=0.91 Score=39.09 Aligned_cols=14 Identities=14% Similarity=0.017 Sum_probs=13.2
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.+++|.||+|+|||
T Consensus 42 ~~l~l~G~~G~GKT 55 (233)
T PRK08727 42 DWLYLSGPAGTGKT 55 (233)
T ss_pred CeEEEECCCCCCHH
Confidence 57999999999999
No 317
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.57 E-value=1.1 Score=37.79 Aligned_cols=16 Identities=25% Similarity=0.071 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 25 ~Ge~~~i~G~nGsGKS 40 (220)
T cd03265 25 RGEIFGLLGPNGAGKT 40 (220)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4578999999999999
No 318
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=78.46 E-value=0.98 Score=34.47 Aligned_cols=12 Identities=25% Similarity=0.155 Sum_probs=11.5
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+|+|++|+|||
T Consensus 2 i~i~G~~~~GKs 13 (159)
T cd04159 2 ITLVGLQNSGKT 13 (159)
T ss_pred EEEEcCCCCCHH
Confidence 789999999999
No 319
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=78.36 E-value=0.84 Score=39.79 Aligned_cols=12 Identities=17% Similarity=0.160 Sum_probs=11.5
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+|+||+|||||
T Consensus 2 iLLmG~~~SGKT 13 (232)
T PF04670_consen 2 ILLMGPRRSGKT 13 (232)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEEcCCCCChh
Confidence 799999999999
No 320
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.36 E-value=1.1 Score=38.04 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 29 ~~Ge~~~l~G~nGsGKS 45 (233)
T cd03258 29 PKGEIFGIIGRSGAGKS 45 (233)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 321
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=78.32 E-value=1.1 Score=37.86 Aligned_cols=17 Identities=12% Similarity=-0.113 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 24 ~~Ge~~~i~G~nGsGKS 40 (227)
T cd03260 24 PKGEITALIGPSGCGKS 40 (227)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 322
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.32 E-value=17 Score=36.32 Aligned_cols=13 Identities=8% Similarity=0.066 Sum_probs=11.9
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-+++.||.|+||+
T Consensus 40 a~Lf~Gp~GvGKt 52 (620)
T PRK14954 40 GYIFSGLRGVGKT 52 (620)
T ss_pred eEEEECCCCCCHH
Confidence 4789999999999
No 323
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=78.22 E-value=1.6 Score=38.75 Aligned_cols=41 Identities=15% Similarity=0.039 Sum_probs=28.4
Q ss_pred CccEEEEccCCCCCC-----CcccCCCCCC--CCCCcceEEecCHHHHH
Q psy10228 50 QEPFMLCYTQDDPTT-----EDTTRARREY--EVDGRDYHFVSSREQME 91 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~-----s~TTRp~R~~--E~dG~dY~FV~s~eef~ 91 (225)
++...|+||||+||| -.--.+|-.| +++|.|+-=. |.++-.
T Consensus 34 Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~l-s~~~~~ 81 (263)
T COG1127 34 GEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQL-SEEELY 81 (263)
T ss_pred CcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhcc-CHHHHH
Confidence 568899999999999 1122334445 5789997777 665543
No 324
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=78.18 E-value=1.1 Score=37.71 Aligned_cols=17 Identities=12% Similarity=0.051 Sum_probs=15.0
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 29 ~~Ge~~~i~G~nGsGKS 45 (228)
T cd03257 29 KKGETLGLVGESGSGKS 45 (228)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34679999999999999
No 325
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=78.09 E-value=1.1 Score=37.16 Aligned_cols=17 Identities=12% Similarity=-0.058 Sum_probs=15.0
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 25 ~~Ge~~~l~G~nGsGKS 41 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKT 41 (200)
T ss_pred CCCCEEEEECCCCCCHH
Confidence 34679999999999999
No 326
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.06 E-value=1 Score=37.85 Aligned_cols=16 Identities=13% Similarity=-0.037 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 29 ~G~~~~i~G~nGsGKS 44 (220)
T cd03293 29 EGEFVALVGPSGCGKS 44 (220)
T ss_pred CCcEEEEECCCCCCHH
Confidence 3568999999999999
No 327
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=78.05 E-value=0.79 Score=46.05 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=26.8
Q ss_pred ccEEEEccCCCCCC------------------CcccCCCC-CCCCCCcceEEecC
Q psy10228 51 EPFMLCYTQDDPTT------------------EDTTRARR-EYEVDGRDYHFVSS 86 (225)
Q Consensus 51 ~~ivl~GpsgsGK~------------------s~TTRp~R-~~E~dG~dY~FV~s 86 (225)
.-|+|+|++|+||| ++||+... .++.+|....+|+|
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDT 173 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDT 173 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEEC
Confidence 35999999999998 67887632 24667777777744
No 328
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=78.00 E-value=15 Score=33.28 Aligned_cols=13 Identities=0% Similarity=0.105 Sum_probs=11.9
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.+++.||+|.||+
T Consensus 30 a~Lf~G~~G~gk~ 42 (329)
T PRK08058 30 AYLFEGAKGTGKK 42 (329)
T ss_pred eEEEECCCCCCHH
Confidence 5789999999998
No 329
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=78.00 E-value=1.1 Score=37.25 Aligned_cols=17 Identities=12% Similarity=0.008 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 24 ~~G~~~~i~G~nGsGKS 40 (208)
T cd03268 24 KKGEIYGFLGPNGAGKT 40 (208)
T ss_pred cCCcEEEEECCCCCCHH
Confidence 34678999999999999
No 330
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=77.94 E-value=1.1 Score=42.31 Aligned_cols=15 Identities=13% Similarity=-0.026 Sum_probs=14.4
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
++.|+|+||+|+|||
T Consensus 203 ~~vi~LVGPTGVGKT 217 (407)
T COG1419 203 KRVIALVGPTGVGKT 217 (407)
T ss_pred CcEEEEECCCCCcHH
Confidence 789999999999999
No 331
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=77.68 E-value=1.1 Score=43.44 Aligned_cols=16 Identities=13% Similarity=0.025 Sum_probs=14.1
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
..++++|+||+||||+
T Consensus 44 ~~~iLlLtGP~G~GKt 59 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKT 59 (519)
T ss_pred CcceEEEECCCCCCHH
Confidence 3568899999999999
No 332
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=77.56 E-value=1 Score=37.96 Aligned_cols=13 Identities=8% Similarity=-0.084 Sum_probs=11.9
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
+|.|+|+||||||
T Consensus 1 ii~i~G~sgsGKT 13 (187)
T cd02024 1 IVGISGVTNSGKT 13 (187)
T ss_pred CEEEECCCCCCHH
Confidence 4789999999999
No 333
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=77.53 E-value=1.1 Score=37.24 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 24 ~Ge~~~l~G~nGsGKS 39 (177)
T cd03222 24 EGEVIGIVGPNGTGKT 39 (177)
T ss_pred CCCEEEEECCCCChHH
Confidence 4578999999999999
No 334
>PRK08084 DNA replication initiation factor; Provisional
Probab=77.52 E-value=1.2 Score=38.45 Aligned_cols=14 Identities=7% Similarity=-0.021 Sum_probs=13.1
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|.||+|+|||
T Consensus 46 ~~l~l~Gp~G~GKT 59 (235)
T PRK08084 46 GYIYLWSREGAGRS 59 (235)
T ss_pred CeEEEECCCCCCHH
Confidence 58999999999999
No 335
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=77.44 E-value=1.3 Score=37.75 Aligned_cols=17 Identities=6% Similarity=-0.015 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 24 ~~Ge~~~i~G~nGsGKS 40 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKS 40 (243)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 336
>PTZ00088 adenylate kinase 1; Provisional
Probab=77.35 E-value=1.1 Score=38.91 Aligned_cols=12 Identities=8% Similarity=-0.086 Sum_probs=11.6
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+|+||+||||+
T Consensus 9 Ivl~G~PGsGK~ 20 (229)
T PTZ00088 9 IVLFGAPGVGKG 20 (229)
T ss_pred EEEECCCCCCHH
Confidence 899999999998
No 337
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=77.32 E-value=1.2 Score=36.10 Aligned_cols=16 Identities=6% Similarity=0.048 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 27 ~Ge~~~i~G~nGsGKS 42 (173)
T cd03246 27 PGESLAIIGPSGSGKS 42 (173)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4578999999999999
No 338
>PRK03003 GTP-binding protein Der; Reviewed
Probab=77.31 E-value=6.4 Score=37.48 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=25.5
Q ss_pred CccEEEEccCCCCCC-----------------CcccCCCCCC--CCCCcceEEe
Q psy10228 50 QEPFMLCYTQDDPTT-----------------EDTTRARREY--EVDGRDYHFV 84 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~-----------------s~TTRp~R~~--E~dG~dY~FV 84 (225)
..-|+|+|.+++||| +.|||.+-.. +.+|..|.++
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~ 264 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFV 264 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEE
Confidence 457899999999999 5677766432 4566667666
No 339
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=77.27 E-value=1.2 Score=37.36 Aligned_cols=16 Identities=6% Similarity=0.023 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 30 ~G~~~~i~G~nGsGKS 45 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKS 45 (221)
T ss_pred CCcEEEEECCCCCCHH
Confidence 4568999999999999
No 340
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=77.25 E-value=48 Score=30.42 Aligned_cols=15 Identities=0% Similarity=-0.243 Sum_probs=13.3
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...|-|+||+|||||
T Consensus 56 ~~~igi~G~~GaGKS 70 (332)
T PRK09435 56 ALRIGITGVPGVGKS 70 (332)
T ss_pred cEEEEEECCCCCCHH
Confidence 457889999999999
No 341
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=77.23 E-value=1.2 Score=37.88 Aligned_cols=16 Identities=6% Similarity=0.104 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 34 ~Ge~~~l~G~nGsGKS 49 (233)
T PRK11629 34 EGEMMAIVGSSGSGKS 49 (233)
T ss_pred CCcEEEEECCCCCCHH
Confidence 4568999999999999
No 342
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=77.20 E-value=0.74 Score=40.36 Aligned_cols=19 Identities=0% Similarity=-0.186 Sum_probs=15.6
Q ss_pred CCCCCccEEEEccCCCCCC
Q psy10228 46 DGSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 46 ~~~~~~~ivl~GpsgsGK~ 64 (225)
+.+...-|+|+|++|+|||
T Consensus 27 ~~~~~~~IllvG~tGvGKS 45 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKS 45 (249)
T ss_pred hccCCeEEEEECCCCCcHH
Confidence 4445567999999999999
No 343
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=77.20 E-value=1.6 Score=36.94 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=23.0
Q ss_pred CCCCccEEEEccCCCCCCC-----cccCCCCCCCCC--CcceEE
Q psy10228 47 GSDQEPFMLCYTQDDPTTE-----DTTRARREYEVD--GRDYHF 83 (225)
Q Consensus 47 ~~~~~~ivl~GpsgsGK~s-----~TTRp~R~~E~d--G~dY~F 83 (225)
...++-+||.||||+||++ .----||.||.. |.+|.|
T Consensus 25 ~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~ 68 (242)
T COG4161 25 CPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDF 68 (242)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEeccccccc
Confidence 3345678999999999992 112335666543 444445
No 344
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.19 E-value=1.2 Score=36.83 Aligned_cols=17 Identities=12% Similarity=-0.132 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 31 ~~Ge~~~l~G~nGsGKS 47 (192)
T cd03232 31 KPGTLTALMGESGAGKT 47 (192)
T ss_pred eCCcEEEEECCCCCCHH
Confidence 34578999999999999
No 345
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.13 E-value=1.3 Score=37.80 Aligned_cols=15 Identities=7% Similarity=0.042 Sum_probs=13.3
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
.+-+.|+|||||||+
T Consensus 36 Ge~vaiVG~SGSGKS 50 (228)
T COG4181 36 GETVAIVGPSGSGKS 50 (228)
T ss_pred CceEEEEcCCCCcHH
Confidence 457899999999999
No 346
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=77.07 E-value=0.99 Score=33.57 Aligned_cols=12 Identities=8% Similarity=-0.072 Sum_probs=11.5
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+++|++|||||
T Consensus 2 I~V~G~~g~GKT 13 (119)
T PF08477_consen 2 IVVLGDSGVGKT 13 (119)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 789999999999
No 347
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=77.04 E-value=1.3 Score=37.04 Aligned_cols=17 Identities=24% Similarity=0.061 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 24 ~~Ge~~~l~G~nGsGKS 40 (213)
T cd03301 24 ADGEFVVLLGPSGCGKT 40 (213)
T ss_pred cCCcEEEEECCCCCCHH
Confidence 34678999999999999
No 348
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=77.00 E-value=1.3 Score=36.26 Aligned_cols=17 Identities=6% Similarity=-0.107 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 23 ~~G~~~~l~G~nGsGKS 39 (180)
T cd03214 23 EAGEIVGILGPNGAGKS 39 (180)
T ss_pred CCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 349
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=76.93 E-value=1.3 Score=39.41 Aligned_cols=16 Identities=13% Similarity=-0.083 Sum_probs=14.0
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
....|+|+||+|+|||
T Consensus 193 ~~~vi~~vGptGvGKT 208 (282)
T TIGR03499 193 QGGVIALVGPTGVGKT 208 (282)
T ss_pred CCeEEEEECCCCCCHH
Confidence 3568999999999999
No 350
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=76.91 E-value=1.3 Score=34.84 Aligned_cols=12 Identities=8% Similarity=-0.081 Sum_probs=11.6
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+|+|++|+|||
T Consensus 3 v~ivG~~~~GKS 14 (170)
T cd01898 3 VGLVGLPNAGKS 14 (170)
T ss_pred eEEECCCCCCHH
Confidence 799999999999
No 351
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=76.78 E-value=1.3 Score=37.60 Aligned_cols=17 Identities=6% Similarity=-0.128 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 31 ~~Ge~~~i~G~nGsGKS 47 (225)
T PRK10247 31 RAGEFKLITGPSGCGKS 47 (225)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 352
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=76.58 E-value=1.3 Score=37.51 Aligned_cols=15 Identities=13% Similarity=0.075 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..+++|.||+|+|||
T Consensus 42 ~~~~~l~G~~G~GKT 56 (227)
T PRK08903 42 DRFFYLWGEAGSGRS 56 (227)
T ss_pred CCeEEEECCCCCCHH
Confidence 468999999999999
No 353
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=76.58 E-value=1.1 Score=38.49 Aligned_cols=13 Identities=0% Similarity=-0.227 Sum_probs=11.6
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
+|-|+||||||||
T Consensus 1 IigI~G~sGSGKT 13 (220)
T cd02025 1 IIGIAGSVAVGKS 13 (220)
T ss_pred CEEeeCCCCCCHH
Confidence 3679999999999
No 354
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=76.55 E-value=1.3 Score=37.73 Aligned_cols=16 Identities=13% Similarity=-0.068 Sum_probs=14.5
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 26 ~Ge~~~i~G~nGsGKS 41 (236)
T TIGR03864 26 PGEFVALLGPNGAGKS 41 (236)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4678999999999999
No 355
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=76.47 E-value=0.47 Score=50.66 Aligned_cols=38 Identities=11% Similarity=0.277 Sum_probs=28.4
Q ss_pred cceeecccccccccCCCCCCCCCCccEEEEccCCCCCC
Q psy10228 27 NFSFSRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~ 64 (225)
.+.|....|.+..++..-+.-.....+||+|++|||||
T Consensus 59 ~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKT 96 (1283)
T TIGR01967 59 EIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKT 96 (1283)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcH
Confidence 45677788888866654334444568999999999999
No 356
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=76.44 E-value=1.3 Score=37.08 Aligned_cols=17 Identities=6% Similarity=-0.046 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 28 ~~G~~~~i~G~nGsGKS 44 (220)
T cd03245 28 RAGEKVAIIGRVGSGKS 44 (220)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 357
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=76.40 E-value=1.5 Score=37.89 Aligned_cols=71 Identities=18% Similarity=0.166 Sum_probs=47.5
Q ss_pred cEEEEccCCCCCC--CcccC------CCCCCCCCCcceEEecCHHHHHHhh----hCCcEEEEEEeCCcceeecHHHHHH
Q psy10228 52 PFMLCYTQDDPTT--EDTTR------ARREYEVDGRDYHFVSSREQMEKDI----QNHLFIEAGQYNDNLYGTSVASVRD 119 (225)
Q Consensus 52 ~ivl~GpsgsGK~--s~TTR------p~R~~E~dG~dY~FV~s~eef~~~i----~~~~FiE~~~~~gn~YGTs~~sV~~ 119 (225)
+|.+.|.||+|-+ +.+-| ..+..+++|-.+|-- ++++|...| +.|.-+.|--...|-+|+..+.+.+
T Consensus 7 iIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~-tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f~e 85 (289)
T COG3954 7 VIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRY-TRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFIE 85 (289)
T ss_pred eEEEecCCCCCcccHHHHHHHHHHhcCccHhhhcccccccc-CchhHHHHHHHHHHcCCcceecCccccchHHHHHHHHH
Confidence 5789999999976 22222 235668899888865 789988777 4566565555556667776665555
Q ss_pred HHHc
Q psy10228 120 VAEK 123 (225)
Q Consensus 120 v~~~ 123 (225)
--+.
T Consensus 86 Yg~~ 89 (289)
T COG3954 86 YGQS 89 (289)
T ss_pred hccc
Confidence 4443
No 358
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=76.37 E-value=1.3 Score=36.62 Aligned_cols=17 Identities=12% Similarity=0.001 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 24 ~~Ge~~~i~G~nGsGKS 40 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKT 40 (198)
T ss_pred cCCcEEEEECCCCCCHH
Confidence 34678999999999999
No 359
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=76.36 E-value=18 Score=33.90 Aligned_cols=13 Identities=0% Similarity=0.115 Sum_probs=11.9
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-+++.||+|+||+
T Consensus 38 a~Lf~Gp~G~GKt 50 (394)
T PRK07940 38 AWLFTGPPGSGRS 50 (394)
T ss_pred EEEEECCCCCcHH
Confidence 4789999999998
No 360
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.33 E-value=31 Score=34.46 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=11.9
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-++++||.|+||+
T Consensus 40 a~Lf~GPpG~GKT 52 (624)
T PRK14959 40 AYLFSGTRGVGKT 52 (624)
T ss_pred eEEEECCCCCCHH
Confidence 4789999999999
No 361
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=76.32 E-value=1.3 Score=35.73 Aligned_cols=17 Identities=12% Similarity=-0.029 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 24 ~~Ge~~~l~G~nGsGKS 40 (163)
T cd03216 24 RRGEVHALLGENGAGKS 40 (163)
T ss_pred eCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 362
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=76.30 E-value=1.4 Score=38.68 Aligned_cols=13 Identities=0% Similarity=-0.207 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.|+|+|++++|||
T Consensus 2 ~V~liG~pnvGKS 14 (270)
T TIGR00436 2 FVAILGRPNVGKS 14 (270)
T ss_pred EEEEECCCCCCHH
Confidence 4889999999999
No 363
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=76.25 E-value=1.3 Score=37.74 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 26 ~~Ge~~~i~G~nGsGKS 42 (242)
T PRK11124 26 PQGETLVLLGPSGAGKS 42 (242)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 364
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=76.11 E-value=1.4 Score=37.29 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=14.5
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 35 ~Ge~~~i~G~nGsGKS 50 (228)
T PRK10584 35 RGETIALIGESGSGKS 50 (228)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4679999999999999
No 365
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=76.09 E-value=1.4 Score=36.91 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 26 ~~Ge~~~i~G~nGsGKS 42 (207)
T PRK13539 26 AAGEALVLTGPNGSGKT 42 (207)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 366
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=76.08 E-value=1.2 Score=42.58 Aligned_cols=17 Identities=6% Similarity=-0.017 Sum_probs=15.0
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||||||||
T Consensus 359 ~~G~~vaIvG~SGsGKS 375 (529)
T TIGR02868 359 PPGERVAILGPSGSGKS 375 (529)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 367
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=76.07 E-value=1.3 Score=40.70 Aligned_cols=17 Identities=12% Similarity=-0.121 Sum_probs=15.0
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||||||||
T Consensus 30 ~~Ge~~~llGpsGsGKS 46 (351)
T PRK11432 30 KQGTMVTLLGPSGCGKT 46 (351)
T ss_pred cCCCEEEEECCCCCcHH
Confidence 34679999999999999
No 368
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=75.99 E-value=1.4 Score=37.62 Aligned_cols=16 Identities=13% Similarity=-0.101 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 10 ~Ge~~~i~G~nGsGKS 25 (230)
T TIGR01184 10 QGEFISLIGHSGCGKS 25 (230)
T ss_pred CCCEEEEECCCCCCHH
Confidence 3568999999999999
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=75.85 E-value=1.6 Score=36.58 Aligned_cols=13 Identities=0% Similarity=-0.125 Sum_probs=12.5
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
+++|+||+|||||
T Consensus 24 ~~~i~G~nGsGKS 36 (197)
T cd03278 24 LTAIVGPNGSGKS 36 (197)
T ss_pred cEEEECCCCCCHH
Confidence 7899999999999
No 370
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=75.79 E-value=1.4 Score=37.81 Aligned_cols=17 Identities=12% Similarity=0.006 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 27 ~~Ge~~~i~G~nGsGKS 43 (250)
T PRK14247 27 PDNTITALMGPSGSGKS 43 (250)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 371
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=75.78 E-value=1.7 Score=40.88 Aligned_cols=63 Identities=13% Similarity=0.004 Sum_probs=35.9
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHH-------
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAE------- 122 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~------- 122 (225)
.+.+.|.||+|+|||-. .|.- ..| -|..+..+ +-.+ ..+-++|-|-..|+++..
T Consensus 148 PlgllL~GPPGcGKTll-Arai-A~e-lg~~~i~v-sa~e---------------L~sk~vGEsEk~IR~~F~~A~~~a~ 208 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQ-CELV-FKK-MGIEPIVM-SAGE---------------LESENAGEPGKLIRQRYREAADIIK 208 (413)
T ss_pred CeEEEeeCCCCCCHHHH-HHHH-HHH-cCCCeEEE-EHHH---------------hhcCcCCcHHHHHHHHHHHHHHHhh
Confidence 45778999999999900 0000 000 12333333 3333 334578888888887653
Q ss_pred -cCCeEEEEc
Q psy10228 123 -KGKHCILDV 131 (225)
Q Consensus 123 -~gk~~ildv 131 (225)
+|+.|||-+
T Consensus 209 ~~~aPcVLFI 218 (413)
T PLN00020 209 KKGKMSCLFI 218 (413)
T ss_pred ccCCCeEEEE
Confidence 467787754
No 372
>PRK00089 era GTPase Era; Reviewed
Probab=75.75 E-value=1.2 Score=39.26 Aligned_cols=14 Identities=0% Similarity=-0.175 Sum_probs=12.8
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
-.|+|+|++|||||
T Consensus 6 g~V~iiG~pn~GKS 19 (292)
T PRK00089 6 GFVAIVGRPNVGKS 19 (292)
T ss_pred EEEEEECCCCCCHH
Confidence 37899999999998
No 373
>PRK10908 cell division protein FtsE; Provisional
Probab=75.74 E-value=1.4 Score=37.06 Aligned_cols=17 Identities=12% Similarity=-0.041 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 26 ~~Ge~~~i~G~nGsGKS 42 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKS 42 (222)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 374
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=75.70 E-value=1.4 Score=36.85 Aligned_cols=16 Identities=19% Similarity=-0.112 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 30 ~Ge~~~i~G~nGsGKS 45 (218)
T cd03266 30 PGEVTGLLGPNGAGKT 45 (218)
T ss_pred CCcEEEEECCCCCCHH
Confidence 4578999999999999
No 375
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=75.64 E-value=1.4 Score=36.54 Aligned_cols=16 Identities=0% Similarity=0.025 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 23 ~Ge~~~i~G~nGsGKS 38 (206)
T TIGR03608 23 KGKMYAIIGESGSGKS 38 (206)
T ss_pred CCcEEEEECCCCCCHH
Confidence 4578999999999999
No 376
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.58 E-value=1.4 Score=37.54 Aligned_cols=16 Identities=19% Similarity=0.015 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 27 ~Ge~~~i~G~nGsGKS 42 (239)
T cd03296 27 SGELVALLGPSGSGKT 42 (239)
T ss_pred CCCEEEEECCCCCCHH
Confidence 3578999999999999
No 377
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=75.54 E-value=1.5 Score=34.75 Aligned_cols=18 Identities=6% Similarity=-0.103 Sum_probs=15.4
Q ss_pred CCCCccEEEEccCCCCCC
Q psy10228 47 GSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 47 ~~~~~~ivl~GpsgsGK~ 64 (225)
...++.+.|.||+|+|||
T Consensus 23 ~~~Ge~~~i~G~nGsGKS 40 (144)
T cd03221 23 INPGDRIGLVGRNGAGKS 40 (144)
T ss_pred ECCCCEEEEECCCCCCHH
Confidence 345678999999999999
No 378
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=75.53 E-value=1.5 Score=37.16 Aligned_cols=17 Identities=12% Similarity=-0.123 Sum_probs=15.0
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 24 ~~Ge~~~l~G~nGsGKS 40 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKT 40 (230)
T ss_pred CCCCEEEEECCCCCCHH
Confidence 34679999999999999
No 379
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=75.49 E-value=9.2 Score=30.96 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=29.0
Q ss_pred eecHHHHHHHHHc---------CCeEEEE----ccHHHHHHHHh-hccCC-eEE-EEecCCHHHHHH-Hhcc
Q psy10228 111 GTSVASVRDVAEK---------GKHCILD----VSGNAIKRLQV-ASLYP-VAI-FIKPKSVESIME-MNKR 165 (225)
Q Consensus 111 GTs~~sV~~v~~~---------gk~~ild----v~~~gvk~L~~-~~~~P-i~I-FI~pps~~~L~~-L~~R 165 (225)
-..++.|+++.+. .|++|+| ++.++..+|.+ .+-.| .++ ++...+.+.|.. ++-|
T Consensus 81 ~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SR 152 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSR 152 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhh
Confidence 5678889887743 5577775 35566555544 45555 333 333344444433 5444
No 380
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.48 E-value=1.5 Score=36.64 Aligned_cols=17 Identities=6% Similarity=-0.021 Sum_probs=15.0
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 22 ~~Ge~~~l~G~nGsGKS 38 (211)
T cd03298 22 AQGEITAIVGPSGSGKS 38 (211)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 381
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=75.43 E-value=2.1 Score=33.33 Aligned_cols=12 Identities=17% Similarity=0.041 Sum_probs=11.6
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+|+|++|||||
T Consensus 3 i~liG~~~~GKS 14 (161)
T cd01861 3 LVFLGDQSVGKT 14 (161)
T ss_pred EEEECCCCCCHH
Confidence 789999999999
No 382
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=75.37 E-value=1.4 Score=38.38 Aligned_cols=17 Identities=0% Similarity=-0.138 Sum_probs=15.0
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 33 ~~Ge~~~I~G~nGsGKS 49 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKS 49 (269)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 383
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=75.36 E-value=1.4 Score=40.50 Aligned_cols=17 Identities=18% Similarity=-0.089 Sum_probs=15.0
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||||||||
T Consensus 28 ~~Ge~~~l~GpsGsGKS 44 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKT 44 (353)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34679999999999999
No 384
>KOG3327|consensus
Probab=75.36 E-value=52 Score=28.24 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=64.1
Q ss_pred eCCcceeecHHHHHHHHHcCCeEEEEc---cHHHHHHHHhh----------c-cCC-eEEEEecCCHHHHHHHhccCCH-
Q psy10228 105 YNDNLYGTSVASVRDVAEKGKHCILDV---SGNAIKRLQVA----------S-LYP-VAIFIKPKSVESIMEMNKRMTE- 168 (225)
Q Consensus 105 ~~gn~YGTs~~sV~~v~~~gk~~ildv---~~~gvk~L~~~----------~-~~P-i~IFI~pps~~~L~~L~~R~se- 168 (225)
|.-|-|- .++.|.+-+.+|..||+|- ++-+.-..+.. + ..| .++|+..+ .+++.+.-.++.|
T Consensus 71 FSAnRwe-~~~~i~e~l~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~-p~~~a~rggfG~Er 148 (208)
T KOG3327|consen 71 FSANRWE-HVSLIKEKLAKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVS-PEDAARRGGFGEER 148 (208)
T ss_pred hccchhh-HHHHHHHHHhcCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCC-HHHHHHhcCcchhH
Confidence 4444443 3456888889999999983 33333222211 1 234 68888875 4556555555542
Q ss_pred ---HHHHHHHHHHH-HHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhccCCce
Q psy10228 169 ---EQAKKMYDRSM-KMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQSGPSI 217 (225)
Q Consensus 169 ---eei~~rl~~a~-k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~~~~~~ 217 (225)
.+.+++..... +++. -.....+++.-. ++|+..++|..+++...+.+.
T Consensus 149 ye~v~fqekv~~~~q~l~r-~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~~~~ 201 (208)
T KOG3327|consen 149 YETVAFQEKVLVFFQKLLR-KEDLNWHVVDASKSVEKVHQQVRSLVENVLSEPI 201 (208)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccCCCeEEEecCccHHHHHHHHHHHHHHhccCCC
Confidence 34444444432 3321 123445555544 799999999999988777664
No 385
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=75.32 E-value=1.7 Score=36.32 Aligned_cols=15 Identities=0% Similarity=-0.040 Sum_probs=13.8
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
++.++|+||+|+|||
T Consensus 29 ~~~~~l~G~Ng~GKS 43 (202)
T cd03243 29 GRLLLITGPNMGGKS 43 (202)
T ss_pred CeEEEEECCCCCccH
Confidence 468999999999999
No 386
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=75.20 E-value=1.5 Score=38.14 Aligned_cols=16 Identities=13% Similarity=-0.020 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 26 ~Ge~~~i~G~nGsGKS 41 (255)
T PRK11248 26 SGELLVVLGPSGCGKT 41 (255)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4678999999999999
No 387
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=75.16 E-value=1.5 Score=35.44 Aligned_cols=17 Identities=0% Similarity=0.075 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 25 ~~Ge~~~i~G~nGsGKS 41 (166)
T cd03223 25 KPGDRLLITGPSGTGKS 41 (166)
T ss_pred CCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 388
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=75.12 E-value=1.4 Score=37.85 Aligned_cols=16 Identities=6% Similarity=-0.037 Sum_probs=14.5
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 28 ~Ge~~~i~G~nGsGKS 43 (253)
T TIGR02323 28 PGEVLGIVGESGSGKS 43 (253)
T ss_pred CCcEEEEECCCCCCHH
Confidence 4678999999999999
No 389
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.10 E-value=1.5 Score=37.46 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 26 ~Ge~~~i~G~nGsGKS 41 (242)
T cd03295 26 KGEFLVLIGPSGSGKT 41 (242)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4568999999999999
No 390
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.09 E-value=1.5 Score=36.96 Aligned_cols=17 Identities=12% Similarity=0.026 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 27 ~~G~~~~i~G~nGsGKS 43 (229)
T cd03254 27 KPGETVAIVGPTGAGKT 43 (229)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 391
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=75.07 E-value=1.5 Score=37.09 Aligned_cols=17 Identities=18% Similarity=-0.042 Sum_probs=14.7
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 24 ~~Ge~~~l~G~nGsGKS 40 (232)
T cd03218 24 KQGEIVGLLGPNGAGKT 40 (232)
T ss_pred cCCcEEEEECCCCCCHH
Confidence 34578999999999999
No 392
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=75.04 E-value=1.5 Score=37.42 Aligned_cols=17 Identities=18% Similarity=-0.035 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 27 ~~Ge~~~l~G~nGsGKS 43 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKT 43 (241)
T ss_pred cCCcEEEEECCCCCCHH
Confidence 34678999999999999
No 393
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=75.03 E-value=1.5 Score=38.08 Aligned_cols=17 Identities=0% Similarity=-0.126 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 37 ~~Ge~~~i~G~nGsGKS 53 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKS 53 (260)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 394
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=75.01 E-value=1.4 Score=40.35 Aligned_cols=15 Identities=0% Similarity=0.007 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...|+|+||+|||||
T Consensus 122 ~g~ili~G~tGSGKT 136 (343)
T TIGR01420 122 RGLILVTGPTGSGKS 136 (343)
T ss_pred CcEEEEECCCCCCHH
Confidence 458999999999999
No 395
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=75.00 E-value=1.5 Score=36.86 Aligned_cols=17 Identities=12% Similarity=-0.003 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 32 ~~Ge~~~l~G~nGsGKS 48 (224)
T TIGR02324 32 NAGECVALSGPSGAGKS 48 (224)
T ss_pred CCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 396
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=74.97 E-value=1.5 Score=37.69 Aligned_cols=17 Identities=12% Similarity=0.041 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 28 ~~Ge~~~l~G~nGsGKS 44 (253)
T PRK14267 28 PQNGVFALMGPSGCGKS 44 (253)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 397
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=74.97 E-value=1.4 Score=40.84 Aligned_cols=15 Identities=0% Similarity=-0.008 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...|+|+||+|||||
T Consensus 134 ~glilI~GpTGSGKT 148 (358)
T TIGR02524 134 EGIVFITGATGSGKS 148 (358)
T ss_pred CCEEEEECCCCCCHH
Confidence 468999999999999
No 398
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=74.91 E-value=1.3 Score=38.10 Aligned_cols=14 Identities=7% Similarity=-0.076 Sum_probs=12.8
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|+||+|+|||
T Consensus 44 ~~~~l~G~~G~GKT 57 (269)
T TIGR03015 44 GFILITGEVGAGKT 57 (269)
T ss_pred CEEEEEcCCCCCHH
Confidence 36899999999999
No 399
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=74.89 E-value=2.8 Score=37.29 Aligned_cols=15 Identities=7% Similarity=-0.104 Sum_probs=13.2
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|.||+|+||+
T Consensus 58 ~~~vll~G~pGTGKT 72 (284)
T TIGR02880 58 TLHMSFTGNPGTGKT 72 (284)
T ss_pred CceEEEEcCCCCCHH
Confidence 347999999999999
No 400
>PRK09183 transposase/IS protein; Provisional
Probab=74.89 E-value=1.5 Score=38.53 Aligned_cols=15 Identities=20% Similarity=0.069 Sum_probs=13.3
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+..++|+||+|+|||
T Consensus 102 ~~~v~l~Gp~GtGKT 116 (259)
T PRK09183 102 NENIVLLGPSGVGKT 116 (259)
T ss_pred CCeEEEEeCCCCCHH
Confidence 356899999999999
No 401
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=74.86 E-value=1.5 Score=37.75 Aligned_cols=17 Identities=6% Similarity=-0.097 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 30 ~~Ge~~~i~G~nGsGKS 46 (253)
T PRK14242 30 EQNQVTALIGPSGCGKS 46 (253)
T ss_pred eCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 402
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.85 E-value=1.3 Score=36.91 Aligned_cols=13 Identities=15% Similarity=-0.016 Sum_probs=12.6
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.+.|+||+|||||
T Consensus 27 ~~~i~G~nGsGKS 39 (211)
T cd03264 27 MYGLLGPNGAGKT 39 (211)
T ss_pred cEEEECCCCCCHH
Confidence 8899999999999
No 403
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=74.84 E-value=1.4 Score=40.90 Aligned_cols=17 Identities=18% Similarity=0.002 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|.||||||||
T Consensus 38 ~~Ge~~~LlGpsGsGKS 54 (375)
T PRK09452 38 NNGEFLTLLGPSGCGKT 54 (375)
T ss_pred eCCCEEEEECCCCCcHH
Confidence 34679999999999999
No 404
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=74.71 E-value=1.6 Score=36.99 Aligned_cols=16 Identities=6% Similarity=0.021 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 32 ~Ge~~~l~G~nGsGKS 47 (226)
T cd03234 32 SGQVMAILGSSGSGKT 47 (226)
T ss_pred CCeEEEEECCCCCCHH
Confidence 3578999999999999
No 405
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=74.64 E-value=2 Score=40.18 Aligned_cols=17 Identities=18% Similarity=0.002 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..+..++|+||+|+|||
T Consensus 135 ~~g~ii~lvGptGvGKT 151 (374)
T PRK14722 135 ERGGVFALMGPTGVGKT 151 (374)
T ss_pred cCCcEEEEECCCCCCHH
Confidence 34679999999999999
No 406
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=74.56 E-value=1.5 Score=38.24 Aligned_cols=16 Identities=6% Similarity=-0.280 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 26 ~Ge~~~i~G~nGsGKS 41 (271)
T PRK13638 26 LSPVTGLVGANGCGKS 41 (271)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4578999999999999
No 407
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=74.51 E-value=1.6 Score=37.43 Aligned_cols=16 Identities=0% Similarity=0.000 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 28 ~Ge~~~i~G~nGsGKS 43 (241)
T PRK14250 28 GGAIYTIVGPSGAGKS 43 (241)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4578999999999999
No 408
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=74.49 E-value=1.5 Score=40.38 Aligned_cols=17 Identities=18% Similarity=0.088 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|.||||||||
T Consensus 28 ~~Ge~~~llG~sGsGKS 44 (356)
T PRK11650 28 ADGEFIVLVGPSGCGKS 44 (356)
T ss_pred cCCCEEEEECCCCCcHH
Confidence 34578999999999999
No 409
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=74.43 E-value=1.4 Score=34.02 Aligned_cols=12 Identities=0% Similarity=-0.141 Sum_probs=11.5
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+++|++|||||
T Consensus 2 i~i~G~~~~GKT 13 (160)
T cd00876 2 VVVLGAGGVGKS 13 (160)
T ss_pred EEEECCCCCCHH
Confidence 789999999999
No 410
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=74.43 E-value=1.5 Score=37.89 Aligned_cols=17 Identities=0% Similarity=-0.181 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 28 ~~Ge~~~i~G~nGsGKS 44 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKS 44 (258)
T ss_pred cCCcEEEEECCCCCCHH
Confidence 34678999999999999
No 411
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=74.40 E-value=1.6 Score=38.62 Aligned_cols=27 Identities=4% Similarity=-0.063 Sum_probs=19.4
Q ss_pred ccccccCCCCCCCCCCccEEEEccCCCCCC
Q psy10228 35 PFMKSKDDKSEDGSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~ 64 (225)
+.+++..- +-..++.+-|+|+||||||
T Consensus 21 ~~l~~VS~---~i~~Ge~lgivGeSGsGKS 47 (252)
T COG1124 21 HALNNVSL---EIERGETLGIVGESGSGKS 47 (252)
T ss_pred hhhcceeE---EecCCCEEEEEcCCCCCHH
Confidence 56665543 2233567889999999999
No 412
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=74.33 E-value=1.6 Score=37.45 Aligned_cols=17 Identities=6% Similarity=-0.062 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 27 ~~Ge~~~i~G~nGsGKS 43 (250)
T PRK14240 27 EENQVTALIGPSGCGKS 43 (250)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 413
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=74.26 E-value=1.6 Score=37.45 Aligned_cols=16 Identities=13% Similarity=-0.041 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 30 ~Ge~~~i~G~nGsGKS 45 (252)
T PRK14239 30 PNEITALIGPSGSGKS 45 (252)
T ss_pred CCcEEEEECCCCCCHH
Confidence 4578999999999999
No 414
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.24 E-value=1.7 Score=35.51 Aligned_cols=16 Identities=13% Similarity=-0.029 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.+..+.|+||+|||||
T Consensus 25 ~G~~~~i~G~nGsGKS 40 (178)
T cd03229 25 AGEIVALLGPSGSGKS 40 (178)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4568999999999999
No 415
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=74.23 E-value=1.6 Score=38.16 Aligned_cols=16 Identities=0% Similarity=-0.191 Sum_probs=14.5
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 37 ~Ge~~~I~G~NGsGKS 52 (257)
T PRK11247 37 AGQFVAVVGRSGCGKS 52 (257)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4678999999999999
No 416
>PRK06893 DNA replication initiation factor; Validated
Probab=74.16 E-value=1.5 Score=37.64 Aligned_cols=14 Identities=7% Similarity=0.043 Sum_probs=12.4
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|.||+|+|||
T Consensus 40 ~~l~l~G~~G~GKT 53 (229)
T PRK06893 40 PFFYIWGGKSSGKS 53 (229)
T ss_pred CeEEEECCCCCCHH
Confidence 35799999999999
No 417
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=74.08 E-value=1.7 Score=36.62 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 35 ~~Ge~~~i~G~nGsGKS 51 (214)
T PRK13543 35 DAGEALLVQGDNGAGKT 51 (214)
T ss_pred CCCCEEEEEcCCCCCHH
Confidence 34678999999999999
No 418
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=74.07 E-value=1.6 Score=37.48 Aligned_cols=17 Identities=12% Similarity=0.042 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 24 ~~Ge~~~i~G~nGsGKS 40 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKS 40 (252)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 419
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=74.07 E-value=1.6 Score=39.96 Aligned_cols=17 Identities=12% Similarity=-0.089 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||||||||
T Consensus 22 ~~Ge~~~l~G~nGsGKS 38 (352)
T PRK11144 22 PAQGITAIFGRSGAGKT 38 (352)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 420
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=74.07 E-value=1.6 Score=38.13 Aligned_cols=17 Identities=6% Similarity=0.018 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 33 ~~Ge~~~l~G~nGsGKS 49 (271)
T PRK13632 33 NEGEYVAILGHNGSGKS 49 (271)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 421
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=74.00 E-value=1.7 Score=35.66 Aligned_cols=17 Identities=12% Similarity=-0.079 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 24 ~~G~~~~i~G~nGsGKS 40 (182)
T cd03215 24 RAGEIVGIAGLVGNGQT 40 (182)
T ss_pred cCCcEEEEECCCCCCHH
Confidence 34678999999999999
No 422
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=73.98 E-value=36 Score=31.08 Aligned_cols=13 Identities=0% Similarity=-0.066 Sum_probs=11.8
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-+++.||+|+||.
T Consensus 26 A~Lf~G~~G~Gk~ 38 (334)
T PRK07993 26 ALLIQALPGMGDD 38 (334)
T ss_pred EEeeECCCCCCHH
Confidence 4789999999998
No 423
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.98 E-value=1.6 Score=36.40 Aligned_cols=16 Identities=6% Similarity=-0.033 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 32 ~Ge~~~i~G~nGsGKS 47 (202)
T cd03233 32 PGEMVLVLGRPGSGCS 47 (202)
T ss_pred CCcEEEEECCCCCCHH
Confidence 4568999999999999
No 424
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=73.95 E-value=1.8 Score=35.93 Aligned_cols=17 Identities=6% Similarity=-0.025 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|+|||
T Consensus 29 ~~G~~~~i~G~nG~GKS 45 (204)
T cd03250 29 PKGELVAIVGPVGSGKS 45 (204)
T ss_pred CCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 425
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=73.94 E-value=1.7 Score=37.29 Aligned_cols=16 Identities=13% Similarity=-0.016 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.+..+.|+||+|||||
T Consensus 28 ~Ge~~~i~G~nGsGKS 43 (250)
T PRK11264 28 PGEVVAIIGPSGSGKT 43 (250)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4568999999999999
No 426
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=73.93 E-value=1.7 Score=36.24 Aligned_cols=17 Identities=12% Similarity=-0.048 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 25 ~~Ge~~~l~G~nGsGKS 41 (204)
T PRK13538 25 NAGELVQIEGPNGAGKT 41 (204)
T ss_pred CCCcEEEEECCCCCCHH
Confidence 34578999999999999
No 427
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=73.88 E-value=1.7 Score=37.31 Aligned_cols=17 Identities=6% Similarity=-0.101 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 25 ~~Ge~~~i~G~nGsGKS 41 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKS 41 (247)
T ss_pred CCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 428
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=73.87 E-value=24 Score=31.04 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=12.9
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
|-|+|+|++|+|||
T Consensus 3 Rni~ivGh~~~GKT 16 (267)
T cd04169 3 RTFAIISHPDAGKT 16 (267)
T ss_pred cEEEEEcCCCCCHH
Confidence 56899999999999
No 429
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=73.82 E-value=1.7 Score=38.11 Aligned_cols=16 Identities=6% Similarity=-0.101 Sum_probs=14.5
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 32 ~Ge~~~l~G~nGsGKS 47 (272)
T PRK15056 32 GGSIAALVGVNGSGKS 47 (272)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4678999999999999
No 430
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=73.74 E-value=1.7 Score=36.47 Aligned_cols=17 Identities=6% Similarity=-0.093 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 25 ~~Ge~~~i~G~nGsGKS 41 (218)
T cd03290 25 PTGQLTMIVGQVGCGKS 41 (218)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 431
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=73.74 E-value=1.5 Score=40.69 Aligned_cols=16 Identities=13% Similarity=0.137 Sum_probs=14.5
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.++|+||||||||
T Consensus 18 ~Gei~~l~G~sGsGKS 33 (363)
T TIGR01186 18 KGEIFVIMGLSGSGKS 33 (363)
T ss_pred CCCEEEEECCCCChHH
Confidence 3578999999999999
No 432
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=73.72 E-value=1.6 Score=40.07 Aligned_cols=17 Identities=12% Similarity=-0.017 Sum_probs=15.0
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||||||||
T Consensus 26 ~~Ge~~~llGpsGsGKS 42 (353)
T PRK10851 26 PSGQMVALLGPSGSGKT 42 (353)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34679999999999999
No 433
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=73.69 E-value=1.7 Score=37.32 Aligned_cols=16 Identities=6% Similarity=-0.124 Sum_probs=14.5
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 27 ~Ge~~~i~G~nGsGKS 42 (246)
T PRK14269 27 QNKITALIGASGCGKS 42 (246)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4578999999999999
No 434
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=73.69 E-value=1.7 Score=36.85 Aligned_cols=16 Identities=19% Similarity=-0.010 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 5 ~Ge~~~l~G~nGsGKS 20 (223)
T TIGR03771 5 KGELLGLLGPNGAGKT 20 (223)
T ss_pred CCcEEEEECCCCCCHH
Confidence 3568999999999999
No 435
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=73.61 E-value=1.7 Score=37.70 Aligned_cols=16 Identities=13% Similarity=-0.047 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 24 ~Ge~~~i~G~NGsGKS 39 (246)
T cd03237 24 ESEVIGILGPNGIGKT 39 (246)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4578999999999999
No 436
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.57 E-value=9.5 Score=36.97 Aligned_cols=13 Identities=8% Similarity=0.158 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++++||+|+||+
T Consensus 38 a~Lf~GppGtGKT 50 (504)
T PRK14963 38 AYLFSGPRGVGKT 50 (504)
T ss_pred EEEEECCCCCCHH
Confidence 4799999999999
No 437
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=73.55 E-value=1.7 Score=35.89 Aligned_cols=16 Identities=0% Similarity=-0.232 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 25 ~Ge~~~l~G~nGsGKS 40 (195)
T PRK13541 25 PSAITYIKGANGCGKS 40 (195)
T ss_pred CCcEEEEECCCCCCHH
Confidence 4568999999999999
No 438
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=73.54 E-value=1.6 Score=40.49 Aligned_cols=16 Identities=19% Similarity=0.065 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|.||||||||
T Consensus 44 ~Ge~~~llGpsGsGKS 59 (377)
T PRK11607 44 KGEIFALLGASGCGKS 59 (377)
T ss_pred CCCEEEEECCCCCcHH
Confidence 4578999999999999
No 439
>PRK05642 DNA replication initiation factor; Validated
Probab=73.45 E-value=1.5 Score=37.72 Aligned_cols=14 Identities=7% Similarity=-0.102 Sum_probs=13.1
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.+++|.||+|+|||
T Consensus 46 ~~l~l~G~~G~GKT 59 (234)
T PRK05642 46 SLIYLWGKDGVGRS 59 (234)
T ss_pred CeEEEECCCCCCHH
Confidence 57899999999999
No 440
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=73.42 E-value=1.3 Score=39.62 Aligned_cols=29 Identities=17% Similarity=0.091 Sum_probs=20.7
Q ss_pred cccccCCCCCCCCCCccEEEEccCCCCCC
Q psy10228 36 FMKSKDDKSEDGSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ivl~GpsgsGK~ 64 (225)
+++-.++-+=+-..++.+-|+|.||||||
T Consensus 25 ~v~avd~Vsf~i~~ge~~glVGESG~GKS 53 (268)
T COG4608 25 YVKAVDGVSFSIKEGETLGLVGESGCGKS 53 (268)
T ss_pred ceEEecceeEEEcCCCEEEEEecCCCCHH
Confidence 44445544434555678999999999999
No 441
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=73.39 E-value=2 Score=31.63 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=11.9
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-++|.||+|+|||
T Consensus 2 ~~~i~~~~G~GKT 14 (144)
T cd00046 2 DVLLAAPTGSGKT 14 (144)
T ss_pred CEEEECCCCCchh
Confidence 4789999999999
No 442
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=73.39 E-value=1.8 Score=36.53 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=13.8
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+..++|+||+|||||
T Consensus 28 ~~~~~i~G~NGsGKS 42 (213)
T cd03279 28 NGLFLICGPTGAGKS 42 (213)
T ss_pred cCEEEEECCCCCCHH
Confidence 568999999999999
No 443
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=73.36 E-value=1.8 Score=36.97 Aligned_cols=17 Identities=6% Similarity=0.051 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 25 ~~Ge~~~l~G~nGsGKS 41 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKS 41 (240)
T ss_pred cCCcEEEEECCCCCCHH
Confidence 34678999999999999
No 444
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=73.33 E-value=1.8 Score=39.59 Aligned_cols=25 Identities=12% Similarity=-0.043 Sum_probs=18.3
Q ss_pred cCCCCCCCCCCccEEEEccCCCCCC
Q psy10228 40 KDDKSEDGSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 40 ~~~~~~~~~~~~~ivl~GpsgsGK~ 64 (225)
.++.+=+-..++.+-|+|.||||||
T Consensus 21 v~~vs~~i~~GE~lgiVGESGsGKS 45 (316)
T COG0444 21 VDGVSFELKKGEILGIVGESGSGKS 45 (316)
T ss_pred EeceeEEEcCCcEEEEEcCCCCCHH
Confidence 3333334455678999999999999
No 445
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=73.30 E-value=1.8 Score=36.51 Aligned_cols=17 Identities=6% Similarity=0.016 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 24 ~~Ge~~~i~G~nGsGKS 40 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKS 40 (223)
T ss_pred cCCcEEEEECCCCCCHH
Confidence 34678999999999999
No 446
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=73.29 E-value=1.8 Score=36.89 Aligned_cols=17 Identities=12% Similarity=0.030 Sum_probs=14.6
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
+.++-++|.||||+||+
T Consensus 35 ~aGECvvL~G~SG~GKS 51 (235)
T COG4778 35 NAGECVVLHGPSGSGKS 51 (235)
T ss_pred cCccEEEeeCCCCCcHH
Confidence 34578999999999998
No 447
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=73.28 E-value=1.8 Score=36.80 Aligned_cols=18 Identities=11% Similarity=-0.086 Sum_probs=15.3
Q ss_pred CCCCccEEEEccCCCCCC
Q psy10228 47 GSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 47 ~~~~~~ivl~GpsgsGK~ 64 (225)
-+.++.+.|+||+|||||
T Consensus 45 i~~Ge~~~i~G~nGsGKS 62 (224)
T cd03220 45 VPRGERIGLIGRNGAGKS 62 (224)
T ss_pred EcCCCEEEEECCCCCCHH
Confidence 344678999999999999
No 448
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.28 E-value=1.8 Score=35.02 Aligned_cols=16 Identities=6% Similarity=0.011 Sum_probs=14.5
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 27 ~G~~~~l~G~nGsGKs 42 (171)
T cd03228 27 PGEKVAIVGPSGSGKS 42 (171)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4678999999999999
No 449
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=73.24 E-value=1.9 Score=34.84 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=19.5
Q ss_pred cccccCCCCCCCCC-CccEEEEccCCCCCC
Q psy10228 36 FMKSKDDKSEDGSD-QEPFMLCYTQDDPTT 64 (225)
Q Consensus 36 ~~~~~~~~~~~~~~-~~~ivl~GpsgsGK~ 64 (225)
|+|+.-.+.+.... ..-|+|+|++|+|||
T Consensus 3 ~~~~~~~~~~~~~~~~~~i~ivG~~~~GKS 32 (179)
T TIGR03598 3 FVKSAVKLKQLPPDDGPEIAFAGRSNVGKS 32 (179)
T ss_pred EEeeeccHhhCCCCCCCEEEEEcCCCCCHH
Confidence 45554444444433 346899999999999
No 450
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=73.19 E-value=1.8 Score=36.78 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=14.2
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|.||+|||||
T Consensus 11 ~Ge~~~i~G~nGsGKS 26 (230)
T TIGR02770 11 RGEVLALVGESGSGKS 26 (230)
T ss_pred CCCEEEEECCCCCCHH
Confidence 3568999999999999
No 451
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=73.07 E-value=1.7 Score=34.62 Aligned_cols=14 Identities=0% Similarity=-0.273 Sum_probs=12.2
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++++|+||+|||
T Consensus 103 ~~v~~~G~~nvGKS 116 (157)
T cd01858 103 ISVGFIGYPNVGKS 116 (157)
T ss_pred eEEEEEeCCCCChH
Confidence 35679999999999
No 452
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=73.05 E-value=1.7 Score=37.35 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=14.5
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 30 ~Ge~~~l~G~nGsGKS 45 (255)
T PRK11300 30 EQEIVSLIGPNGAGKT 45 (255)
T ss_pred CCeEEEEECCCCCCHH
Confidence 4678999999999999
No 453
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=73.04 E-value=1.7 Score=36.90 Aligned_cols=17 Identities=18% Similarity=0.048 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 29 ~~Ge~~~i~G~nGsGKS 45 (237)
T PRK11614 29 NQGEIVTLIGANGAGKT 45 (237)
T ss_pred cCCcEEEEECCCCCCHH
Confidence 34678999999999999
No 454
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=73.04 E-value=1.8 Score=36.78 Aligned_cols=17 Identities=6% Similarity=-0.072 Sum_probs=15.0
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 26 ~~Ge~~~i~G~nGsGKS 42 (237)
T cd03252 26 KPGEVVGIVGRSGSGKS 42 (237)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 455
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=72.98 E-value=1.7 Score=40.21 Aligned_cols=78 Identities=21% Similarity=0.193 Sum_probs=42.0
Q ss_pred CccEEEEccCCCCCC------------C-----cccCCCCCCCCCCcceEEecCHH-HHHHhhhCCcEEEEEEeCCccee
Q psy10228 50 QEPFMLCYTQDDPTT------------E-----DTTRARREYEVDGRDYHFVSSRE-QMEKDIQNHLFIEAGQYNDNLYG 111 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~------------s-----~TTRp~R~~E~dG~dY~FV~s~e-ef~~~i~~~~FiE~~~~~gn~YG 111 (225)
+--|+|+||+||||+ | .||=.- .| --|.| .| -..+++++.+|=- .-.-.|
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTE-AG-YVGED------VENillkLlqaadydV----~rAerG 164 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTE-AG-YVGED------VENILLKLLQAADYDV----ERAERG 164 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhh-cc-ccchh------HHHHHHHHHHHcccCH----HHHhCC
Confidence 346999999999999 2 232211 01 11222 22 2445555554411 011223
Q ss_pred -ecHHHHHHHHHcCCeEE--EEccHHHHHHH
Q psy10228 112 -TSVASVRDVAEKGKHCI--LDVSGNAIKRL 139 (225)
Q Consensus 112 -Ts~~sV~~v~~~gk~~i--ldv~~~gvk~L 139 (225)
+-.++|.++..+...+- =||+++|+++.
T Consensus 165 IIyIDEIDKIarkSeN~SITRDVSGEGVQQA 195 (408)
T COG1219 165 IIYIDEIDKIARKSENPSITRDVSGEGVQQA 195 (408)
T ss_pred eEEEechhhhhccCCCCCcccccCchHHHHH
Confidence 23567788877754433 48999998653
No 456
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=72.93 E-value=4.2 Score=38.92 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=21.9
Q ss_pred cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHH
Q psy10228 52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEK 92 (225)
Q Consensus 52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~ 92 (225)
=++|.||+|+|||. .-|.- .+| -|..++.+ +..+|..
T Consensus 90 giLL~GppGtGKT~-la~al-A~~-~~~~~~~i-~~~~~~~ 126 (495)
T TIGR01241 90 GVLLVGPPGTGKTL-LAKAV-AGE-AGVPFFSI-SGSDFVE 126 (495)
T ss_pred cEEEECCCCCCHHH-HHHHH-HHH-cCCCeeec-cHHHHHH
Confidence 48999999999990 00000 011 24556777 6666654
No 457
>KOG0164|consensus
Probab=72.90 E-value=1.4 Score=44.47 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=23.6
Q ss_pred ccEEEEccCCCCCC----------CcccCCCCCCCCCCc
Q psy10228 51 EPFMLCYTQDDPTT----------EDTTRARREYEVDGR 79 (225)
Q Consensus 51 ~~ivl~GpsgsGK~----------s~TTRp~R~~E~dG~ 79 (225)
.-|+|+|.||+||+ ..+|-++-.+|++-+
T Consensus 95 tcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierV 133 (1001)
T KOG0164|consen 95 TCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERV 133 (1001)
T ss_pred eEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHH
Confidence 47999999999999 677888777777653
No 458
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.89 E-value=1.8 Score=37.84 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 48 ~~Ge~~~l~G~nGsGKS 64 (269)
T cd03294 48 REGEIFVIMGLSGSGKS 64 (269)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 459
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=72.87 E-value=1.8 Score=37.44 Aligned_cols=16 Identities=6% Similarity=-0.056 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 37 ~Ge~~~l~G~nGsGKS 52 (259)
T PRK14274 37 ENEVTAIIGPSGCGKS 52 (259)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4678999999999999
No 460
>COG2229 Predicted GTPase [General function prediction only]
Probab=72.85 E-value=37 Score=28.78 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=56.4
Q ss_pred cEEEEccCCCCCC----------CcccCCCCCC-CCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHH----
Q psy10228 52 PFMLCYTQDDPTT----------EDTTRARREY-EVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVAS---- 116 (225)
Q Consensus 52 ~ivl~GpsgsGK~----------s~TTRp~R~~-E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~s---- 116 (225)
=||+.||.++||+ +.+|-.++.. +-.|+.=-=| .-+| |.-.-++.+.=|+|||+=+.
T Consensus 12 KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTv--a~D~------g~~~~~~~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 12 KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTV--AMDF------GSIELDEDTGVHLFGTPGQERFKF 83 (187)
T ss_pred eEEEEcccccchhhHHHHhhccccceeeccccccccccccceeE--eecc------cceEEcCcceEEEecCCCcHHHHH
Confidence 4899999999998 3344333332 1112100011 0011 22223333555899997442
Q ss_pred HHHHHHc---CCeEEEEccH-------HHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCHHHHHHHHHHH
Q psy10228 117 VRDVAEK---GKHCILDVSG-------NAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRS 178 (225)
Q Consensus 117 V~~v~~~---gk~~ildv~~-------~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~~rl~~a 178 (225)
.-+++-+ |-++++|.+. .-+.-+......|++|++.=.+ |....+.+++++.+...
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~D------L~~a~ppe~i~e~l~~~ 149 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQD------LFDALPPEKIREALKLE 149 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccc------cCCCCCHHHHHHHHHhc
Confidence 2233333 5566666431 1122223223367889886322 34555677887666554
No 461
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=72.80 E-value=1.8 Score=37.09 Aligned_cols=17 Identities=12% Similarity=-0.019 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 28 ~~Ge~~~i~G~nGsGKS 44 (251)
T PRK14251 28 EEKELTALIGPSGCGKS 44 (251)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 44678999999999999
No 462
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=72.78 E-value=1.8 Score=37.73 Aligned_cols=17 Identities=6% Similarity=-0.058 Sum_probs=15.0
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 44 ~~Ge~~~I~G~nGsGKS 60 (267)
T PRK14237 44 EKNKITALIGPSGSGKS 60 (267)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 463
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=72.76 E-value=1.8 Score=37.63 Aligned_cols=17 Identities=12% Similarity=-0.044 Sum_probs=15.0
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 35 ~~Ge~~~i~G~nGsGKS 51 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKS 51 (265)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 44678999999999999
No 464
>KOG1534|consensus
Probab=72.69 E-value=0.91 Score=39.71 Aligned_cols=20 Identities=5% Similarity=0.207 Sum_probs=14.8
Q ss_pred HHHHHHHHhhccCCeEEEEe
Q psy10228 133 GNAIKRLQVASLYPVAIFIK 152 (225)
Q Consensus 133 ~~gvk~L~~~~~~Pi~IFI~ 152 (225)
++-++.|+...+.+.++|+.
T Consensus 119 ~~iv~hl~~~~F~~c~Vyll 138 (273)
T KOG1534|consen 119 PQIVEHLKQWNFNVCVVYLL 138 (273)
T ss_pred HHHHHHHhcccCceeEEEEe
Confidence 46677777767888888874
No 465
>KOG0745|consensus
Probab=72.64 E-value=2 Score=41.28 Aligned_cols=15 Identities=13% Similarity=0.089 Sum_probs=13.3
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+--|+|+|||||||+
T Consensus 226 KSNvLllGPtGsGKT 240 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKT 240 (564)
T ss_pred cccEEEECCCCCchh
Confidence 446999999999999
No 466
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.64 E-value=1.6 Score=36.53 Aligned_cols=14 Identities=7% Similarity=-0.123 Sum_probs=13.3
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
+.+.|+||+|||||
T Consensus 24 e~~~i~G~nGsGKS 37 (214)
T cd03297 24 EVTGIFGASGAGKS 37 (214)
T ss_pred eeEEEECCCCCCHH
Confidence 68999999999999
No 467
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=72.62 E-value=2.6 Score=43.21 Aligned_cols=15 Identities=0% Similarity=-0.017 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
.+++|++|.||||||
T Consensus 26 ~klvV~TGlSGSGKS 40 (935)
T COG0178 26 NKLVVITGLSGSGKS 40 (935)
T ss_pred CcEEEEecCCCCCch
Confidence 468999999999998
No 468
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=72.60 E-value=1.9 Score=37.58 Aligned_cols=16 Identities=6% Similarity=-0.157 Sum_probs=14.5
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 36 ~Ge~~~i~G~nGsGKS 51 (265)
T PRK10575 36 AGKVTGLIGHNGSGKS 51 (265)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4678999999999999
No 469
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=72.57 E-value=1.7 Score=38.37 Aligned_cols=16 Identities=6% Similarity=-0.054 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 36 ~Ge~~~l~G~nGsGKS 51 (289)
T PRK13645 36 KNKVTCVIGTTGSGKS 51 (289)
T ss_pred CCCEEEEECCCCCCHH
Confidence 3578999999999999
No 470
>KOG0734|consensus
Probab=72.57 E-value=4.8 Score=39.76 Aligned_cols=62 Identities=23% Similarity=0.338 Sum_probs=41.1
Q ss_pred ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH---HcCCeE
Q psy10228 51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA---EKGKHC 127 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~---~~gk~~ 127 (225)
+=|+|+||+|-||+ .--|. -.|| .|+.|||. +-.||+.| | -|.-..-|++.. ++.-.|
T Consensus 338 KGVLLvGPPGTGKT-lLARA-vAGE-A~VPFF~~-sGSEFdEm-----~----------VGvGArRVRdLF~aAk~~APc 398 (752)
T KOG0734|consen 338 KGVLLVGPPGTGKT-LLARA-VAGE-AGVPFFYA-SGSEFDEM-----F----------VGVGARRVRDLFAAAKARAPC 398 (752)
T ss_pred CceEEeCCCCCchh-HHHHH-hhcc-cCCCeEec-cccchhhh-----h----------hcccHHHHHHHHHHHHhcCCe
Confidence 35899999999998 11111 1233 57899998 89999987 2 355555566644 445568
Q ss_pred EEEc
Q psy10228 128 ILDV 131 (225)
Q Consensus 128 ildv 131 (225)
|+-|
T Consensus 399 IIFI 402 (752)
T KOG0734|consen 399 IIFI 402 (752)
T ss_pred EEEE
Confidence 7755
No 471
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=72.55 E-value=2 Score=35.64 Aligned_cols=17 Identities=6% Similarity=-0.099 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
...+.+.|+||+|||||
T Consensus 33 ~~Ge~~~l~G~nGsGKS 49 (194)
T cd03213 33 KPGELTAIMGPSGAGKS 49 (194)
T ss_pred cCCcEEEEECCCCCCHH
Confidence 34678999999999999
No 472
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=72.49 E-value=1.9 Score=37.72 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 36 ~~Ge~~~i~G~nGsGKS 52 (268)
T PRK10419 36 KSGETVALLGRSGCGKS 52 (268)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 473
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.47 E-value=1.9 Score=36.47 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=14.5
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 27 ~Ge~~~i~G~nGsGKS 42 (234)
T cd03251 27 AGETVALVGPSGSGKS 42 (234)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4678999999999999
No 474
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=72.44 E-value=1.8 Score=37.15 Aligned_cols=17 Identities=0% Similarity=-0.070 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 27 ~~Ge~~~i~G~nGsGKS 43 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKS 43 (250)
T ss_pred eCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 475
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=72.41 E-value=1.8 Score=34.98 Aligned_cols=12 Identities=17% Similarity=0.016 Sum_probs=11.5
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
++|.||+|+|||
T Consensus 2 ~li~G~~G~GKT 13 (187)
T cd01124 2 TLLSGGPGTGKT 13 (187)
T ss_pred EEEEcCCCCCHH
Confidence 789999999999
No 476
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=72.37 E-value=2.8 Score=35.68 Aligned_cols=15 Identities=0% Similarity=-0.057 Sum_probs=13.6
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..+.+|+||+|||||
T Consensus 23 ~~~~~i~GpNGsGKS 37 (243)
T cd03272 23 PKHNVVVGRNGSGKS 37 (243)
T ss_pred CCcEEEECCCCCCHH
Confidence 458999999999999
No 477
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=72.37 E-value=1.9 Score=36.84 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 25 ~~Ge~~~i~G~nGsGKS 41 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKS 41 (248)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 478
>PRK06526 transposase; Provisional
Probab=72.34 E-value=1.8 Score=38.07 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=24.3
Q ss_pred CccEEEEccCCCCCC----CcccCCCCCCCCCCcceEEecCHHHHHHhhh
Q psy10228 50 QEPFMLCYTQDDPTT----EDTTRARREYEVDGRDYHFVSSREQMEKDIQ 95 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~----s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~ 95 (225)
..-++|+||+|+||| ....... ..|..-.|+ +..++-..+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~----~~g~~v~f~-t~~~l~~~l~ 142 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC----QAGHRVLFA-TAAQWVARLA 142 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH----HCCCchhhh-hHHHHHHHHH
Confidence 357899999999999 0001111 124444666 6666665554
No 479
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=72.33 E-value=2 Score=35.00 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 27 ~Ge~~~i~G~nGsGKS 42 (178)
T cd03247 27 QGEKIALLGRSGSGKS 42 (178)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4568999999999999
No 480
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=72.28 E-value=1.9 Score=37.03 Aligned_cols=16 Identities=6% Similarity=-0.101 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 30 ~Ge~~~I~G~nGsGKS 45 (251)
T PRK14244 30 KREVTAFIGPSGCGKS 45 (251)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4678999999999999
No 481
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=72.14 E-value=1.9 Score=36.93 Aligned_cols=17 Identities=6% Similarity=0.001 Sum_probs=15.0
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 31 ~~Ge~~~i~G~nGsGKS 47 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKS 47 (252)
T ss_pred cCCcEEEEECCCCCCHH
Confidence 34678999999999999
No 482
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=72.07 E-value=1.9 Score=37.61 Aligned_cols=17 Identities=6% Similarity=-0.187 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 31 ~~Ge~~~i~G~nGsGKS 47 (269)
T PRK11831 31 PRGKITAIMGPSGIGKT 47 (269)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 483
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.06 E-value=2 Score=36.46 Aligned_cols=16 Identities=0% Similarity=-0.031 Sum_probs=14.5
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 26 ~Ge~~~l~G~nGsGKS 41 (236)
T cd03253 26 AGKKVAIVGPSGSGKS 41 (236)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4678999999999999
No 484
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=72.06 E-value=1.9 Score=39.90 Aligned_cols=16 Identities=6% Similarity=-0.031 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||||||||
T Consensus 28 ~Ge~~~l~G~nGsGKS 43 (369)
T PRK11000 28 EGEFVVFVGPSGCGKS 43 (369)
T ss_pred CCCEEEEECCCCCcHH
Confidence 4578999999999999
No 485
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=72.03 E-value=2 Score=36.50 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 23 ~~Ge~~~l~G~nGsGKS 39 (232)
T PRK10771 23 ERGERVAILGPSGAGKS 39 (232)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 486
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=71.98 E-value=1.9 Score=39.59 Aligned_cols=14 Identities=0% Similarity=-0.028 Sum_probs=12.9
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
-.|++.||+|||||
T Consensus 126 GLILVTGpTGSGKS 139 (353)
T COG2805 126 GLILVTGPTGSGKS 139 (353)
T ss_pred ceEEEeCCCCCcHH
Confidence 38999999999999
No 487
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=71.91 E-value=1.8 Score=34.57 Aligned_cols=12 Identities=8% Similarity=-0.128 Sum_probs=11.5
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+|+|++|||||
T Consensus 2 vvlvG~~~~GKT 13 (169)
T cd04158 2 VVTLGLDGAGKT 13 (169)
T ss_pred EEEECCCCCCHH
Confidence 789999999999
No 488
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=71.89 E-value=2 Score=36.19 Aligned_cols=16 Identities=13% Similarity=-0.037 Sum_probs=14.5
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 39 ~Ge~~~i~G~nGsGKS 54 (226)
T cd03248 39 PGEVTALVGPSGSGKS 54 (226)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4678999999999999
No 489
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=71.88 E-value=1.9 Score=37.58 Aligned_cols=17 Identities=0% Similarity=0.071 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 37 ~~Ge~~~i~G~NGsGKS 53 (267)
T PRK15112 37 REGQTLAIIGENGSGKS 53 (267)
T ss_pred cCCCEEEEEcCCCCCHH
Confidence 34578999999999999
No 490
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=71.84 E-value=2 Score=36.99 Aligned_cols=16 Identities=6% Similarity=-0.143 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 31 ~Ge~~~i~G~nGsGKS 46 (253)
T PRK14261 31 KNRVTALIGPSGCGKS 46 (253)
T ss_pred CCcEEEEECCCCCCHH
Confidence 3568999999999999
No 491
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=71.81 E-value=36 Score=30.29 Aligned_cols=14 Identities=0% Similarity=-0.021 Sum_probs=12.5
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..+++.||.|+||+
T Consensus 27 ha~Lf~G~~G~Gk~ 40 (313)
T PRK05564 27 HAHIIVGEDGIGKS 40 (313)
T ss_pred ceEEeECCCCCCHH
Confidence 36799999999998
No 492
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=71.80 E-value=1.9 Score=36.17 Aligned_cols=17 Identities=12% Similarity=0.065 Sum_probs=15.0
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|.||+|||||
T Consensus 22 ~~Ge~~~i~G~nGsGKS 38 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKS 38 (213)
T ss_pred eCCcEEEEECCCCCCHH
Confidence 34678999999999999
No 493
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=71.79 E-value=1.8 Score=33.31 Aligned_cols=12 Identities=0% Similarity=-0.050 Sum_probs=11.5
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+|+|++|+|||
T Consensus 2 i~l~G~~g~GKT 13 (170)
T cd01876 2 IAFAGRSNVGKS 13 (170)
T ss_pred EEEEcCCCCCHH
Confidence 789999999999
No 494
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=71.74 E-value=2.1 Score=35.68 Aligned_cols=17 Identities=12% Similarity=0.024 Sum_probs=15.0
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 24 ~~Ge~~~i~G~nGsGKS 40 (200)
T cd03217 24 KKGEVHALMGPNGSGKS 40 (200)
T ss_pred CCCcEEEEECCCCCCHH
Confidence 34679999999999999
No 495
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=71.73 E-value=2 Score=36.88 Aligned_cols=16 Identities=13% Similarity=-0.085 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 30 ~Ge~~~l~G~nGsGKS 45 (252)
T PRK14255 30 QNEITALIGPSGCGKS 45 (252)
T ss_pred CCCEEEEECCCCCCHH
Confidence 3578999999999999
No 496
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=71.66 E-value=2 Score=37.34 Aligned_cols=16 Identities=6% Similarity=-0.051 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.+..+.|+||+|||||
T Consensus 27 ~Ge~~~i~G~nGsGKS 42 (258)
T PRK13548 27 PGEVVAILGPNGAGKS 42 (258)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4678999999999999
No 497
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=71.66 E-value=2 Score=36.83 Aligned_cols=16 Identities=6% Similarity=-0.137 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 28 ~Ge~~~i~G~nGsGKS 43 (250)
T PRK14262 28 KNQITAIIGPSGCGKT 43 (250)
T ss_pred CCCEEEEECCCCCCHH
Confidence 4578999999999999
No 498
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=71.58 E-value=2 Score=37.84 Aligned_cols=17 Identities=6% Similarity=-0.134 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 25 ~~Ge~~~l~G~nGsGKS 41 (272)
T PRK13547 25 EPGRVTALLGRNGAGKS 41 (272)
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 499
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=71.57 E-value=2 Score=41.00 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCCccEEEEccCCCCCC------CcccCC-CCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT------EDTTRA-RREYEV 76 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~------s~TTRp-~R~~E~ 76 (225)
..++.+.|+||+||||| ..-..| |-.|++
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i 64 (506)
T PRK13549 29 RAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI 64 (506)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE
No 500
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=71.48 E-value=66 Score=29.62 Aligned_cols=13 Identities=0% Similarity=-0.067 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-++|+||.|+||+
T Consensus 47 a~L~~G~~G~GKt 59 (351)
T PRK09112 47 ALLFEGPEGIGKA 59 (351)
T ss_pred eEeeECCCCCCHH
Confidence 5899999999998
Done!