Query psy10228
Match_columns 225
No_of_seqs 164 out of 1177
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 21:10:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tvt_A Disks large 1 tumor sup 100.0 2.1E-53 7.1E-58 378.1 18.9 190 31-225 83-290 (292)
2 1kjw_A Postsynaptic density pr 100.0 6.9E-52 2.4E-56 368.5 20.3 189 32-225 89-295 (295)
3 1ex7_A Guanylate kinase; subst 100.0 3E-50 1E-54 336.6 21.2 161 50-212 1-185 (186)
4 2xkx_A Disks large homolog 4; 100.0 1.9E-47 6.4E-52 374.7 22.4 188 33-225 516-721 (721)
5 3ney_A 55 kDa erythrocyte memb 100.0 9.4E-44 3.2E-48 299.9 18.0 160 49-219 18-197 (197)
6 3shw_A Tight junction protein 100.0 6.8E-39 2.3E-43 300.5 9.1 160 32-222 208-383 (468)
7 3tsz_A Tight junction protein 100.0 2.7E-38 9.2E-43 290.8 10.4 160 31-222 215-391 (391)
8 3tau_A Guanylate kinase, GMP k 100.0 2.4E-35 8E-40 247.3 16.0 165 48-214 6-191 (208)
9 3a00_A Guanylate kinase, GMP k 100.0 4.2E-35 1.4E-39 241.3 16.2 160 51-212 2-185 (186)
10 1kgd_A CASK, peripheral plasma 100.0 9.7E-34 3.3E-38 232.2 15.3 156 50-212 5-179 (180)
11 1s96_A Guanylate kinase, GMP k 100.0 7.7E-32 2.7E-36 229.6 20.6 162 50-213 16-199 (219)
12 2qor_A Guanylate kinase; phosp 100.0 1.3E-31 4.5E-36 223.1 20.4 162 50-213 12-198 (204)
13 1lvg_A Guanylate kinase, GMP k 100.0 6.4E-30 2.2E-34 213.1 18.6 161 50-212 4-188 (198)
14 3kfv_A Tight junction protein 100.0 2.2E-31 7.5E-36 237.9 10.0 170 31-223 128-301 (308)
15 3tr0_A Guanylate kinase, GMP k 99.9 1.1E-25 3.9E-30 185.1 18.7 161 50-212 7-187 (205)
16 3lnc_A Guanylate kinase, GMP k 99.9 1E-25 3.4E-30 190.5 16.7 164 50-215 27-212 (231)
17 4dey_A Voltage-dependent L-typ 99.9 4.9E-26 1.7E-30 204.9 6.9 154 49-212 141-321 (337)
18 1z6g_A Guanylate kinase; struc 99.9 1.9E-22 6.4E-27 170.3 20.9 165 49-215 22-211 (218)
19 2j41_A Guanylate kinase; GMP, 99.9 1.4E-21 4.8E-26 160.5 15.3 162 50-213 6-188 (207)
20 1znw_A Guanylate kinase, GMP k 99.7 3.7E-16 1.3E-20 129.9 20.2 161 48-210 18-200 (207)
21 1gvn_B Zeta; postsegregational 99.1 6E-12 2.1E-16 110.4 0.5 160 50-214 33-231 (287)
22 3a8t_A Adenylate isopentenyltr 99.0 7.1E-11 2.4E-15 106.5 0.1 69 51-130 41-136 (339)
23 3eph_A TRNA isopentenyltransfe 98.9 4.4E-11 1.5E-15 110.3 -3.2 69 51-130 3-97 (409)
24 3exa_A TRNA delta(2)-isopenten 98.9 9.5E-11 3.2E-15 105.0 -2.4 73 51-135 4-102 (322)
25 3foz_A TRNA delta(2)-isopenten 98.8 1.4E-10 4.8E-15 103.6 -3.5 70 50-130 10-105 (316)
26 3lw7_A Adenylate kinase relate 98.6 8.7E-08 3E-12 74.8 8.5 154 51-212 2-177 (179)
27 3dl0_A Adenylate kinase; phosp 98.6 5E-08 1.7E-12 80.4 6.5 98 115-212 66-215 (216)
28 3fb4_A Adenylate kinase; psych 98.6 4.3E-08 1.5E-12 80.7 5.5 98 115-212 66-215 (216)
29 2ze6_A Isopentenyl transferase 98.5 1.3E-08 4.4E-13 87.3 -0.3 103 52-166 3-139 (253)
30 2z0h_A DTMP kinase, thymidylat 98.5 5.9E-08 2E-12 78.2 3.6 149 52-212 2-192 (197)
31 4eaq_A DTMP kinase, thymidylat 98.5 1.8E-07 6.3E-12 79.1 6.4 152 50-212 26-225 (229)
32 1zak_A Adenylate kinase; ATP:A 98.5 3.3E-09 1.1E-13 88.2 -4.6 155 50-211 5-210 (222)
33 1kht_A Adenylate kinase; phosp 98.4 3.5E-07 1.2E-11 73.0 6.5 156 51-209 4-191 (192)
34 3tlx_A Adenylate kinase 2; str 98.4 1.6E-07 5.6E-12 79.7 4.6 142 51-210 30-242 (243)
35 3kb2_A SPBC2 prophage-derived 98.4 7E-06 2.4E-10 64.3 12.5 141 52-214 3-169 (173)
36 2c95_A Adenylate kinase 1; tra 98.3 3.6E-07 1.2E-11 73.4 4.6 102 110-212 74-194 (196)
37 3lv8_A DTMP kinase, thymidylat 98.3 8.6E-07 3E-11 75.8 7.2 151 50-213 27-230 (236)
38 3v9p_A DTMP kinase, thymidylat 98.3 6E-07 2E-11 76.4 5.6 151 50-211 25-226 (227)
39 1qhx_A CPT, protein (chloramph 98.3 1.1E-06 3.8E-11 69.7 6.0 96 108-209 70-176 (178)
40 3crm_A TRNA delta(2)-isopenten 98.2 1.5E-08 5.2E-13 90.7 -6.0 69 51-130 6-100 (323)
41 1nn5_A Similar to deoxythymidy 98.2 5.9E-07 2E-11 73.2 3.4 96 115-212 84-201 (215)
42 2v54_A DTMP kinase, thymidylat 98.2 3.2E-07 1.1E-11 74.4 1.7 93 115-211 77-190 (204)
43 3trf_A Shikimate kinase, SK; a 98.1 1.3E-06 4.4E-11 69.9 3.7 151 51-212 6-175 (185)
44 3d3q_A TRNA delta(2)-isopenten 98.1 4.3E-07 1.5E-11 81.8 0.6 73 51-135 8-106 (340)
45 4edh_A DTMP kinase, thymidylat 98.1 4.7E-06 1.6E-10 69.9 6.8 151 50-211 6-206 (213)
46 3t61_A Gluconokinase; PSI-biol 98.1 2.7E-06 9.4E-11 69.2 5.0 94 114-211 76-179 (202)
47 3vaa_A Shikimate kinase, SK; s 98.1 5.9E-06 2E-10 67.4 6.7 152 50-212 25-196 (199)
48 2wwf_A Thymidilate kinase, put 98.0 6E-07 2.1E-11 73.2 0.2 95 116-212 86-200 (212)
49 2bwj_A Adenylate kinase 5; pho 98.0 1.4E-05 4.7E-10 64.2 7.9 95 117-211 84-196 (199)
50 1qf9_A UMP/CMP kinase, protein 98.0 1.4E-05 4.9E-10 63.5 7.7 95 116-211 73-191 (194)
51 1ly1_A Polynucleotide kinase; 98.0 2E-06 6.8E-11 67.9 2.3 148 51-211 3-172 (181)
52 1nks_A Adenylate kinase; therm 98.0 4.9E-06 1.7E-10 66.2 3.9 154 52-209 3-193 (194)
53 2plr_A DTMP kinase, probable t 97.9 2.4E-05 8.3E-10 63.1 7.4 93 117-211 79-207 (213)
54 3zvl_A Bifunctional polynucleo 97.9 1.7E-05 5.9E-10 72.6 6.9 121 49-194 257-393 (416)
55 1rz3_A Hypothetical protein rb 97.9 1.8E-06 6E-11 70.9 -0.1 140 50-196 22-200 (201)
56 1ukz_A Uridylate kinase; trans 97.9 0.00013 4.5E-09 59.0 11.2 99 112-211 83-201 (203)
57 2xb4_A Adenylate kinase; ATP-b 97.9 1.8E-05 6.1E-10 65.9 6.1 53 114-166 65-127 (223)
58 2pbr_A DTMP kinase, thymidylat 97.8 0.00082 2.8E-08 53.2 15.1 94 116-211 75-191 (195)
59 2f6r_A COA synthase, bifunctio 97.8 9.7E-06 3.3E-10 70.3 3.2 85 125-212 182-269 (281)
60 2vli_A Antibiotic resistance p 97.8 0.00025 8.7E-09 56.0 11.3 94 114-214 66-174 (183)
61 4eun_A Thermoresistant glucoki 97.8 2.9E-05 1E-09 63.3 5.5 91 118-212 95-194 (200)
62 1knq_A Gluconate kinase; ALFA/ 97.7 0.00017 5.8E-09 56.9 9.3 87 119-210 75-172 (175)
63 3umf_A Adenylate kinase; rossm 97.7 7.9E-05 2.7E-09 62.8 7.6 90 123-212 107-214 (217)
64 1uf9_A TT1252 protein; P-loop, 97.7 1E-05 3.5E-10 65.2 1.6 85 124-214 106-196 (203)
65 2cdn_A Adenylate kinase; phosp 97.7 0.00049 1.7E-08 55.7 11.4 88 123-210 97-200 (201)
66 2if2_A Dephospho-COA kinase; a 97.7 3.7E-05 1.3E-09 62.3 4.5 71 145-216 124-196 (204)
67 1y63_A LMAJ004144AAA protein; 97.6 9E-05 3.1E-09 59.6 6.5 149 50-211 10-174 (184)
68 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 2.5E-05 8.4E-10 66.7 1.9 154 51-212 5-174 (260)
69 1jjv_A Dephospho-COA kinase; P 97.5 0.00011 3.9E-09 59.6 5.6 86 124-212 105-197 (206)
70 3cm0_A Adenylate kinase; ATP-b 97.5 7.1E-05 2.4E-09 59.5 4.1 64 147-210 108-185 (186)
71 4tmk_A Protein (thymidylate ki 97.5 0.00041 1.4E-08 58.0 8.5 95 117-212 86-207 (213)
72 2jaq_A Deoxyguanosine kinase; 97.5 0.00098 3.3E-08 53.2 10.4 67 147-213 127-202 (205)
73 1e6c_A Shikimate kinase; phosp 97.4 0.00026 9E-09 55.4 6.4 64 146-210 95-169 (173)
74 2h92_A Cytidylate kinase; ross 97.4 0.0022 7.6E-08 52.2 12.0 88 121-211 115-217 (219)
75 3iij_A Coilin-interacting nucl 97.4 0.0023 8E-08 50.5 11.7 104 50-166 11-118 (180)
76 1tev_A UMP-CMP kinase; ploop, 97.4 0.00015 5.3E-09 57.5 4.6 89 123-211 85-194 (196)
77 1a7j_A Phosphoribulokinase; tr 97.3 1.1E-06 3.6E-11 77.1 -9.6 68 94-161 87-164 (290)
78 2pt5_A Shikimate kinase, SK; a 97.3 0.00069 2.4E-08 52.8 7.6 62 146-212 94-164 (168)
79 2iyv_A Shikimate kinase, SK; t 97.3 0.00025 8.7E-09 56.4 4.7 66 146-211 95-168 (184)
80 3fdi_A Uncharacterized protein 97.2 0.0022 7.4E-08 52.8 10.1 96 115-213 88-200 (201)
81 1gtv_A TMK, thymidylate kinase 97.2 2.4E-07 8.4E-12 75.6 -13.9 97 108-206 73-208 (214)
82 1zuh_A Shikimate kinase; alpha 97.2 0.00033 1.1E-08 55.0 4.8 60 147-209 99-167 (168)
83 2rhm_A Putative kinase; P-loop 97.2 0.00032 1.1E-08 55.8 4.3 108 50-165 5-125 (193)
84 1q3t_A Cytidylate kinase; nucl 97.1 0.0053 1.8E-07 51.0 11.8 88 121-211 132-234 (236)
85 1e4v_A Adenylate kinase; trans 97.1 0.00078 2.7E-08 55.1 6.4 42 168-209 161-213 (214)
86 1zd8_A GTP:AMP phosphotransfer 97.1 0.001 3.5E-08 54.9 6.6 45 168-212 166-215 (227)
87 2gks_A Bifunctional SAT/APS ki 97.0 2E-05 6.8E-10 74.9 -4.5 158 50-211 372-540 (546)
88 3hdt_A Putative kinase; struct 97.0 0.0084 2.9E-07 50.3 12.2 94 116-211 108-218 (223)
89 4hlc_A DTMP kinase, thymidylat 97.0 0.0085 2.9E-07 49.5 12.0 95 116-211 77-200 (205)
90 2bdt_A BH3686; alpha-beta prot 97.0 0.00061 2.1E-08 54.4 4.6 108 51-167 3-124 (189)
91 3sr0_A Adenylate kinase; phosp 97.0 0.0028 9.6E-08 52.6 8.6 96 116-211 67-204 (206)
92 3ld9_A DTMP kinase, thymidylat 97.0 0.0002 7E-09 60.5 1.5 151 49-211 20-215 (223)
93 2yvu_A Probable adenylyl-sulfa 96.9 0.00047 1.6E-08 55.1 3.1 150 50-211 13-183 (186)
94 2pez_A Bifunctional 3'-phospho 96.9 0.00018 6.3E-09 57.1 0.4 25 187-211 149-175 (179)
95 3be4_A Adenylate kinase; malar 96.8 0.011 3.8E-07 48.4 10.5 14 51-64 6-19 (217)
96 1m7g_A Adenylylsulfate kinase; 96.7 3.4E-05 1.2E-09 63.4 -5.5 154 50-211 25-202 (211)
97 3tmk_A Thymidylate kinase; pho 96.7 0.00083 2.9E-08 56.4 2.9 152 50-211 5-202 (216)
98 2qt1_A Nicotinamide riboside k 96.6 0.00081 2.8E-08 54.6 2.6 66 146-211 131-205 (207)
99 1uj2_A Uridine-cytidine kinase 96.6 0.0056 1.9E-07 51.4 7.9 68 145-212 151-234 (252)
100 3hjn_A DTMP kinase, thymidylat 96.5 0.0071 2.4E-07 49.6 7.3 98 114-212 72-192 (197)
101 2grj_A Dephospho-COA kinase; T 96.5 0.0023 7.7E-08 52.5 4.3 76 124-212 111-187 (192)
102 1np6_A Molybdopterin-guanine d 96.5 0.00015 5E-09 59.0 -2.9 69 51-123 7-95 (174)
103 1kag_A SKI, shikimate kinase I 96.4 0.0019 6.5E-08 50.5 3.3 62 146-211 98-172 (173)
104 1ak2_A Adenylate kinase isoenz 96.4 0.039 1.3E-06 45.5 11.4 45 168-212 181-231 (233)
105 1ltq_A Polynucleotide kinase; 96.3 0.0026 9E-08 54.4 3.9 122 51-179 3-144 (301)
106 3nwj_A ATSK2; P loop, shikimat 96.1 0.031 1.1E-06 47.6 9.6 151 50-212 48-237 (250)
107 1aky_A Adenylate kinase; ATP:A 96.1 0.01 3.5E-07 48.4 6.3 14 51-64 5-18 (220)
108 1zp6_A Hypothetical protein AT 96.0 0.00042 1.5E-08 55.2 -2.3 15 50-64 9-23 (191)
109 1via_A Shikimate kinase; struc 95.9 0.0027 9.1E-08 50.1 2.0 62 146-211 94-166 (175)
110 4i1u_A Dephospho-COA kinase; s 95.9 0.019 6.4E-07 48.0 7.0 83 124-212 112-202 (210)
111 1x6v_B Bifunctional 3'-phospho 95.5 0.0011 3.8E-08 64.1 -2.2 158 50-212 52-223 (630)
112 2p5t_B PEZT; postsegregational 95.3 0.0006 2.1E-08 57.7 -4.5 104 50-160 32-151 (253)
113 3r20_A Cytidylate kinase; stru 93.7 1.1 3.8E-05 37.6 12.4 68 146-213 147-229 (233)
114 2axn_A 6-phosphofructo-2-kinas 92.8 0.046 1.6E-06 51.4 2.6 47 49-96 34-80 (520)
115 1m8p_A Sulfate adenylyltransfe 92.7 0.015 5.2E-07 55.4 -0.9 143 50-211 396-566 (573)
116 3ake_A Cytidylate kinase; CMP 91.0 0.79 2.7E-05 36.1 7.7 65 146-210 137-207 (208)
117 1xjc_A MOBB protein homolog; s 90.9 0.06 2.1E-06 43.4 0.9 34 51-84 5-58 (169)
118 4gp7_A Metallophosphoesterase; 90.5 0.063 2.1E-06 42.3 0.6 138 50-202 9-163 (171)
119 1vht_A Dephospho-COA kinase; s 90.2 0.19 6.7E-06 40.5 3.4 66 145-211 126-194 (218)
120 1mky_A Probable GTP-binding pr 89.2 0.11 3.7E-06 47.3 1.2 35 51-85 181-234 (439)
121 3c8u_A Fructokinase; YP_612366 89.2 0.14 4.8E-06 41.3 1.8 52 143-194 146-206 (208)
122 3uie_A Adenylyl-sulfate kinase 89.0 0.11 3.8E-06 41.6 1.0 24 189-212 169-195 (200)
123 3tqf_A HPR(Ser) kinase; transf 87.7 0.039 1.3E-06 45.2 -2.5 55 50-121 16-70 (181)
124 3tif_A Uncharacterized ABC tra 86.5 0.2 6.8E-06 41.9 1.1 17 48-64 29-45 (235)
125 3asz_A Uridine kinase; cytidin 85.5 0.21 7.3E-06 39.9 0.7 68 143-210 123-206 (211)
126 2kjq_A DNAA-related protein; s 85.3 0.38 1.3E-05 37.2 2.1 16 49-64 35-50 (149)
127 1knx_A Probable HPR(Ser) kinas 85.1 0.077 2.6E-06 47.0 -2.3 55 50-121 147-201 (312)
128 4a74_A DNA repair and recombin 84.9 0.28 9.5E-06 39.3 1.2 15 50-64 25-39 (231)
129 2eyu_A Twitching motility prot 84.4 0.24 8.3E-06 42.1 0.6 16 49-64 24-39 (261)
130 1cke_A CK, MSSA, protein (cyti 84.3 0.25 8.4E-06 39.8 0.6 67 145-211 141-222 (227)
131 2ehv_A Hypothetical protein PH 83.7 0.29 1E-05 39.7 0.8 16 49-64 29-44 (251)
132 2pcj_A ABC transporter, lipopr 83.4 0.31 1.1E-05 40.3 0.8 16 49-64 29-44 (224)
133 2bbw_A Adenylate kinase 4, AK4 83.3 0.3 1E-05 40.4 0.7 15 50-64 27-41 (246)
134 3b85_A Phosphate starvation-in 83.1 0.5 1.7E-05 38.8 2.0 27 50-78 22-54 (208)
135 3ec2_A DNA replication protein 83.0 0.29 9.8E-06 38.3 0.5 15 50-64 38-52 (180)
136 2qmh_A HPR kinase/phosphorylas 83.0 0.42 1.4E-05 39.8 1.5 16 50-65 34-49 (205)
137 1a5t_A Delta prime, HOLB; zinc 82.6 1.8 6E-05 37.6 5.5 13 52-64 26-38 (334)
138 2cbz_A Multidrug resistance-as 82.6 0.38 1.3E-05 40.2 1.1 16 49-64 30-45 (237)
139 1b0u_A Histidine permease; ABC 82.5 0.38 1.3E-05 40.8 1.1 17 48-64 30-46 (262)
140 4e22_A Cytidylate kinase; P-lo 82.3 0.39 1.3E-05 40.2 1.1 68 146-213 164-246 (252)
141 3gfo_A Cobalt import ATP-bindi 82.2 0.36 1.2E-05 41.5 0.8 16 49-64 33-48 (275)
142 4g1u_C Hemin import ATP-bindin 82.1 0.37 1.3E-05 41.1 0.9 16 49-64 36-51 (266)
143 3gmt_A Adenylate kinase; ssgci 81.9 4.8 0.00017 33.7 7.7 96 116-211 75-229 (230)
144 1jbk_A CLPB protein; beta barr 81.8 0.42 1.5E-05 36.3 1.1 15 50-64 43-57 (195)
145 3fvq_A Fe(3+) IONS import ATP- 81.8 0.41 1.4E-05 43.0 1.1 17 48-64 28-44 (359)
146 3n70_A Transport activator; si 81.7 0.48 1.6E-05 36.0 1.3 15 50-64 24-38 (145)
147 1mv5_A LMRA, multidrug resista 81.5 0.4 1.4E-05 40.1 0.9 16 49-64 27-42 (243)
148 2ff7_A Alpha-hemolysin translo 81.4 0.4 1.4E-05 40.3 0.8 16 49-64 34-49 (247)
149 1vht_A Dephospho-COA kinase; s 81.2 0.44 1.5E-05 38.3 1.0 14 51-64 5-18 (218)
150 3aez_A Pantothenate kinase; tr 81.1 0.5 1.7E-05 41.3 1.4 18 47-64 87-104 (312)
151 1ye8_A Protein THEP1, hypothet 81.0 0.39 1.3E-05 38.3 0.6 13 52-64 2-14 (178)
152 1sgw_A Putative ABC transporte 80.8 0.44 1.5E-05 39.4 0.9 16 49-64 34-49 (214)
153 2ixe_A Antigen peptide transpo 80.8 0.48 1.6E-05 40.4 1.1 17 48-64 43-59 (271)
154 2olj_A Amino acid ABC transpor 80.8 0.48 1.6E-05 40.4 1.1 17 48-64 48-64 (263)
155 3t15_A Ribulose bisphosphate c 80.7 0.44 1.5E-05 40.8 0.9 14 51-64 37-50 (293)
156 1g6h_A High-affinity branched- 80.7 0.44 1.5E-05 40.2 0.8 16 49-64 32-47 (257)
157 2ghi_A Transport protein; mult 80.7 0.49 1.7E-05 40.1 1.1 16 49-64 45-60 (260)
158 1ji0_A ABC transporter; ATP bi 80.6 0.45 1.5E-05 39.8 0.8 16 49-64 31-46 (240)
159 1rj9_A FTSY, signal recognitio 80.6 0.51 1.7E-05 41.1 1.2 16 49-64 101-116 (304)
160 2pze_A Cystic fibrosis transme 80.3 0.46 1.6E-05 39.4 0.8 16 49-64 33-48 (229)
161 3rlf_A Maltose/maltodextrin im 80.0 0.52 1.8E-05 42.7 1.1 17 48-64 27-43 (381)
162 1htw_A HI0065; nucleotide-bind 79.9 0.5 1.7E-05 37.1 0.8 16 49-64 32-47 (158)
163 2yz2_A Putative ABC transporte 79.7 0.55 1.9E-05 39.9 1.1 16 49-64 32-47 (266)
164 2yyz_A Sugar ABC transporter, 79.6 0.55 1.9E-05 42.1 1.1 17 48-64 27-43 (359)
165 2vp4_A Deoxynucleoside kinase; 79.5 0.57 1.9E-05 38.4 1.1 69 144-212 145-225 (230)
166 2it1_A 362AA long hypothetical 79.4 0.56 1.9E-05 42.1 1.1 17 48-64 27-43 (362)
167 3bos_A Putative DNA replicatio 79.4 0.55 1.9E-05 37.5 1.0 16 49-64 51-66 (242)
168 2d2e_A SUFC protein; ABC-ATPas 79.4 0.52 1.8E-05 39.6 0.8 16 49-64 28-43 (250)
169 2onk_A Molybdate/tungstate ABC 79.4 0.49 1.7E-05 39.7 0.7 14 51-64 25-38 (240)
170 2wji_A Ferrous iron transport 79.3 0.52 1.8E-05 36.0 0.8 13 52-64 5-17 (165)
171 2zu0_C Probable ATP-dependent 79.2 0.58 2E-05 39.8 1.1 17 48-64 44-60 (267)
172 1vpl_A ABC transporter, ATP-bi 79.2 0.58 2E-05 39.7 1.1 17 48-64 39-55 (256)
173 2v9p_A Replication protein E1; 78.8 0.56 1.9E-05 41.1 0.9 18 47-64 123-140 (305)
174 2gza_A Type IV secretion syste 78.7 0.56 1.9E-05 41.6 0.9 15 50-64 175-189 (361)
175 1v43_A Sugar-binding transport 78.7 0.6 2.1E-05 42.0 1.1 17 48-64 35-51 (372)
176 2qi9_C Vitamin B12 import ATP- 78.7 0.56 1.9E-05 39.6 0.8 16 49-64 25-40 (249)
177 2nq2_C Hypothetical ABC transp 78.6 0.57 2E-05 39.6 0.9 16 49-64 30-45 (253)
178 3kta_A Chromosome segregation 78.4 0.52 1.8E-05 36.6 0.6 13 52-64 28-40 (182)
179 2p65_A Hypothetical protein PF 78.3 0.5 1.7E-05 36.0 0.4 15 50-64 43-57 (187)
180 2ihy_A ABC transporter, ATP-bi 78.0 0.6 2.1E-05 40.1 0.8 16 49-64 46-61 (279)
181 1z47_A CYSA, putative ABC-tran 78.0 0.62 2.1E-05 41.7 1.0 16 49-64 40-55 (355)
182 3gd7_A Fusion complex of cysti 77.9 0.64 2.2E-05 42.1 1.1 17 48-64 45-61 (390)
183 3te6_A Regulatory protein SIR3 77.9 7.9 0.00027 33.9 8.1 14 51-64 46-59 (318)
184 2jeo_A Uridine-cytidine kinase 77.8 0.63 2.1E-05 38.5 0.9 68 144-211 153-235 (245)
185 3pih_A Uvrabc system protein A 77.7 0.94 3.2E-05 45.5 2.3 15 50-64 24-38 (916)
186 2w0m_A SSO2452; RECA, SSPF, un 77.7 0.63 2.2E-05 37.0 0.8 15 50-64 23-37 (235)
187 1g29_1 MALK, maltose transport 77.5 0.65 2.2E-05 41.7 1.0 16 49-64 28-43 (372)
188 2gj8_A MNME, tRNA modification 77.3 0.68 2.3E-05 35.7 0.9 14 51-64 5-18 (172)
189 1sq5_A Pantothenate kinase; P- 77.2 0.73 2.5E-05 39.8 1.2 16 49-64 79-94 (308)
190 1odf_A YGR205W, hypothetical 3 77.1 0.74 2.5E-05 39.7 1.2 15 50-64 31-45 (290)
191 3b1v_A Ferrous iron uptake tra 77.0 0.8 2.7E-05 39.0 1.4 13 52-64 5-17 (272)
192 2w58_A DNAI, primosome compone 76.8 0.7 2.4E-05 36.5 0.9 14 51-64 55-68 (202)
193 2bbs_A Cystic fibrosis transme 76.7 0.74 2.5E-05 39.8 1.1 17 48-64 62-78 (290)
194 3co5_A Putative two-component 76.3 0.7 2.4E-05 35.0 0.7 15 50-64 27-41 (143)
195 3jvv_A Twitching mobility prot 76.3 0.67 2.3E-05 41.3 0.7 15 50-64 123-137 (356)
196 2i3b_A HCR-ntpase, human cance 76.1 0.77 2.6E-05 37.0 1.0 14 51-64 2-15 (189)
197 2cvh_A DNA repair and recombin 76.0 0.75 2.6E-05 36.5 0.9 15 50-64 20-34 (220)
198 3tui_C Methionine import ATP-b 75.9 0.81 2.8E-05 41.2 1.1 41 48-90 52-100 (366)
199 3llm_A ATP-dependent RNA helic 75.7 0.77 2.6E-05 37.6 0.9 15 50-64 76-90 (235)
200 4dhe_A Probable GTP-binding pr 75.7 0.46 1.6E-05 37.8 -0.5 15 50-64 29-43 (223)
201 3nh6_A ATP-binding cassette SU 75.5 0.53 1.8E-05 41.2 -0.2 17 48-64 78-94 (306)
202 3ake_A Cytidylate kinase; CMP 75.5 0.72 2.5E-05 36.3 0.6 13 52-64 4-16 (208)
203 2pjz_A Hypothetical protein ST 75.4 0.82 2.8E-05 38.9 1.0 15 50-64 30-44 (263)
204 2ewv_A Twitching motility prot 75.4 0.72 2.5E-05 41.2 0.6 15 50-64 136-150 (372)
205 1nij_A Hypothetical protein YJ 75.3 0.89 3.1E-05 39.4 1.2 14 51-64 5-18 (318)
206 3d31_A Sulfate/molybdate ABC t 75.2 0.54 1.8E-05 41.9 -0.2 17 48-64 24-40 (348)
207 1n0w_A DNA repair protein RAD5 75.1 0.82 2.8E-05 36.9 0.8 15 50-64 24-38 (243)
208 2pt7_A CAG-ALFA; ATPase, prote 74.7 0.83 2.9E-05 40.1 0.9 15 50-64 171-185 (330)
209 2ygr_A Uvrabc system protein A 74.6 1 3.6E-05 45.6 1.6 15 50-64 46-60 (993)
210 3b9q_A Chloroplast SRP recepto 74.6 0.85 2.9E-05 39.6 0.9 16 49-64 99-114 (302)
211 2r6f_A Excinuclease ABC subuni 74.4 1.1 3.6E-05 45.4 1.6 15 50-64 44-58 (972)
212 2qz4_A Paraplegin; AAA+, SPG7, 74.3 1 3.6E-05 36.7 1.3 15 50-64 39-53 (262)
213 3czq_A Putative polyphosphate 74.2 37 0.0012 29.6 11.3 50 50-105 86-152 (304)
214 3e70_C DPA, signal recognition 74.0 0.96 3.3E-05 39.8 1.1 16 49-64 128-143 (328)
215 3tqc_A Pantothenate kinase; bi 73.9 0.82 2.8E-05 40.3 0.6 14 51-64 93-106 (321)
216 1ixz_A ATP-dependent metallopr 73.8 0.83 2.8E-05 37.6 0.6 12 53-64 52-63 (254)
217 3sop_A Neuronal-specific septi 73.5 0.85 2.9E-05 38.9 0.6 12 53-64 5-16 (270)
218 2vf7_A UVRA2, excinuclease ABC 73.4 1.2 4.2E-05 44.2 1.8 15 50-64 36-50 (842)
219 1lv7_A FTSH; alpha/beta domain 73.1 0.9 3.1E-05 37.4 0.6 14 51-64 46-59 (257)
220 1oxx_K GLCV, glucose, ABC tran 73.0 0.54 1.8E-05 41.9 -0.8 17 48-64 29-45 (353)
221 1cr0_A DNA primase/helicase; R 72.9 0.96 3.3E-05 38.2 0.8 16 49-64 34-49 (296)
222 2nzj_A GTP-binding protein REM 72.8 0.6 2.1E-05 35.2 -0.5 18 195-212 153-170 (175)
223 1njg_A DNA polymerase III subu 72.3 0.99 3.4E-05 35.4 0.7 14 51-64 46-59 (250)
224 2chg_A Replication factor C sm 72.2 0.97 3.3E-05 35.1 0.6 13 52-64 40-52 (226)
225 2yl4_A ATP-binding cassette SU 72.0 1.6 5.6E-05 41.1 2.2 17 48-64 368-384 (595)
226 1pui_A ENGB, probable GTP-bind 71.9 1.1 3.6E-05 35.3 0.8 15 50-64 26-40 (210)
227 3qf4_B Uncharacterized ABC tra 71.9 1.7 5.7E-05 41.1 2.3 45 47-92 378-429 (598)
228 2dr3_A UPF0273 protein PH0284; 71.1 1.1 3.9E-05 36.0 0.8 15 50-64 23-37 (247)
229 2f1r_A Molybdopterin-guanine d 71.1 0.51 1.8E-05 37.6 -1.3 14 51-64 3-16 (171)
230 2zej_A Dardarin, leucine-rich 71.0 1.1 3.7E-05 34.8 0.6 13 52-64 4-16 (184)
231 1p9r_A General secretion pathw 70.7 1.1 3.7E-05 40.9 0.6 15 50-64 167-181 (418)
232 2x8a_A Nuclear valosin-contain 70.7 1.1 3.8E-05 38.0 0.6 20 142-161 166-185 (274)
233 3b9p_A CG5977-PA, isoform A; A 70.6 1.2 4E-05 37.4 0.8 15 50-64 54-68 (297)
234 3syl_A Protein CBBX; photosynt 70.4 1.5 5.2E-05 36.8 1.5 15 50-64 67-81 (309)
235 1ega_A Protein (GTP-binding pr 70.4 0.97 3.3E-05 38.9 0.2 14 51-64 9-22 (301)
236 3h4m_A Proteasome-activating n 70.3 1.5 5.1E-05 36.5 1.4 15 50-64 51-65 (285)
237 1oix_A RAS-related protein RAB 70.2 1.1 3.8E-05 35.1 0.5 14 51-64 30-43 (191)
238 1u0l_A Probable GTPase ENGC; p 70.1 1.2 4.2E-05 38.2 0.8 15 50-64 169-183 (301)
239 2xtp_A GTPase IMAP family memb 70.1 1.4 4.9E-05 36.3 1.2 15 50-64 22-36 (260)
240 3pxg_A Negative regulator of g 70.0 3.5 0.00012 37.6 4.0 14 51-64 202-215 (468)
241 1iy2_A ATP-dependent metallopr 69.8 1.2 4E-05 37.4 0.6 12 53-64 76-87 (278)
242 4a82_A Cystic fibrosis transme 69.7 1.4 4.7E-05 41.5 1.1 43 48-91 365-414 (578)
243 2f9l_A RAB11B, member RAS onco 69.6 1.2 4.1E-05 35.0 0.6 13 52-64 7-19 (199)
244 2bjv_A PSP operon transcriptio 69.4 1.6 5.3E-05 36.1 1.3 15 50-64 29-43 (265)
245 1l8q_A Chromosomal replication 69.2 1.3 4.4E-05 37.8 0.8 15 50-64 37-51 (324)
246 2cxx_A Probable GTP-binding pr 69.0 1.6 5.4E-05 33.4 1.2 20 195-214 168-187 (190)
247 2yv5_A YJEQ protein; hydrolase 68.7 1.4 4.7E-05 38.0 0.8 28 50-77 165-196 (302)
248 1nlf_A Regulatory protein REPA 68.7 1.4 4.7E-05 37.0 0.8 16 49-64 29-44 (279)
249 2og2_A Putative signal recogni 68.2 1.4 4.8E-05 39.3 0.8 16 49-64 156-171 (359)
250 1t9h_A YLOQ, probable GTPase E 68.2 0.69 2.4E-05 40.5 -1.2 15 50-64 173-187 (307)
251 3cf0_A Transitional endoplasmi 68.1 1.5 5.1E-05 37.4 0.9 15 50-64 49-63 (301)
252 3b5x_A Lipid A export ATP-bind 68.0 1.6 5.6E-05 41.0 1.3 17 48-64 367-383 (582)
253 1d2n_A N-ethylmaleimide-sensit 67.9 1.3 4.6E-05 36.7 0.6 14 51-64 65-78 (272)
254 2v1u_A Cell division control p 67.9 1.6 5.4E-05 37.4 1.1 16 49-64 43-58 (387)
255 1in4_A RUVB, holliday junction 67.8 1.4 4.8E-05 38.2 0.7 14 51-64 52-65 (334)
256 4fcw_A Chaperone protein CLPB; 67.8 1.4 4.7E-05 37.0 0.6 14 51-64 48-61 (311)
257 2qby_A CDC6 homolog 1, cell di 67.5 1.7 6E-05 37.1 1.3 16 49-64 44-59 (386)
258 1cke_A CK, MSSA, protein (cyti 67.5 19 0.00064 28.4 7.5 14 51-64 6-19 (227)
259 3ux8_A Excinuclease ABC, A sub 67.5 1.5 5E-05 42.0 0.9 15 50-64 348-362 (670)
260 2qtf_A Protein HFLX, GTP-bindi 67.4 1.5 5E-05 39.1 0.7 13 52-64 181-193 (364)
261 1f2t_A RAD50 ABC-ATPase; DNA d 67.4 1.4 4.9E-05 33.8 0.6 14 51-64 24-37 (149)
262 1ofh_A ATP-dependent HSL prote 67.1 1.5 5.1E-05 36.6 0.7 14 51-64 51-64 (310)
263 1svm_A Large T antigen; AAA+ f 67.1 1.6 5.3E-05 39.3 0.9 16 49-64 168-183 (377)
264 3b60_A Lipid A export ATP-bind 67.0 1.6 5.6E-05 41.0 1.1 16 49-64 368-383 (582)
265 2qgz_A Helicase loader, putati 67.0 1.6 5.4E-05 37.7 0.9 15 50-64 152-166 (308)
266 2jeo_A Uridine-cytidine kinase 66.9 14 0.00047 30.1 6.7 15 50-64 25-39 (245)
267 1hqc_A RUVB; extended AAA-ATPa 66.8 2.2 7.4E-05 36.0 1.7 14 51-64 39-52 (324)
268 2oap_1 GSPE-2, type II secreti 66.2 1.6 5.5E-05 40.8 0.8 15 50-64 260-274 (511)
269 3uk6_A RUVB-like 2; hexameric 66.0 1.6 5.6E-05 37.6 0.8 14 51-64 71-84 (368)
270 1z2a_A RAS-related protein RAB 65.8 1.6 5.5E-05 32.4 0.6 13 52-64 7-19 (168)
271 4e22_A Cytidylate kinase; P-lo 65.8 17 0.0006 29.8 7.2 16 49-64 26-41 (252)
272 2ged_A SR-beta, signal recogni 65.7 1.6 5.5E-05 33.7 0.6 15 50-64 48-62 (193)
273 1kao_A RAP2A; GTP-binding prot 65.6 1.6 5.6E-05 32.2 0.6 13 52-64 5-17 (167)
274 3hws_A ATP-dependent CLP prote 65.5 1.8 6E-05 37.8 0.9 15 50-64 51-65 (363)
275 2wjg_A FEOB, ferrous iron tran 65.5 1.6 5.6E-05 33.4 0.6 26 195-220 153-178 (188)
276 2hjg_A GTP-binding protein ENG 65.3 8.6 0.00029 34.5 5.5 37 50-86 175-230 (436)
277 1sxj_D Activator 1 41 kDa subu 65.2 2.5 8.4E-05 36.0 1.7 13 52-64 60-72 (353)
278 3qf4_A ABC transporter, ATP-bi 65.1 1.9 6.6E-05 40.6 1.2 45 48-93 367-418 (587)
279 2dyk_A GTP-binding protein; GT 65.0 1.7 5.8E-05 32.1 0.6 12 53-64 4-15 (161)
280 3t34_A Dynamin-related protein 64.6 2.2 7.4E-05 37.3 1.3 13 52-64 36-48 (360)
281 1c9k_A COBU, adenosylcobinamid 64.5 1.7 5.9E-05 35.1 0.6 13 52-64 1-13 (180)
282 2ce2_X GTPase HRAS; signaling 64.4 1.7 5.9E-05 31.9 0.5 12 53-64 6-17 (166)
283 1ek0_A Protein (GTP-binding pr 64.4 1.8 6.1E-05 32.2 0.6 12 53-64 6-17 (170)
284 3qf7_A RAD50; ABC-ATPase, ATPa 64.3 1.7 5.9E-05 38.5 0.6 13 52-64 25-37 (365)
285 1ky3_A GTP-binding protein YPT 64.1 1.8 6.1E-05 32.6 0.6 13 52-64 10-22 (182)
286 1wf3_A GTP-binding protein; GT 64.1 1.5 5.3E-05 37.7 0.2 14 51-64 8-21 (301)
287 1lw7_A Transcriptional regulat 64.1 1.4 4.8E-05 38.7 -0.0 15 50-64 170-184 (365)
288 2qag_B Septin-6, protein NEDD5 64.1 2.4 8.3E-05 38.8 1.5 16 49-64 39-56 (427)
289 3q72_A GTP-binding protein RAD 64.0 1.8 6.1E-05 32.3 0.5 12 53-64 5-16 (166)
290 1e69_A Chromosome segregation 64.0 2.7 9.3E-05 36.2 1.8 13 52-64 26-38 (322)
291 1g8p_A Magnesium-chelatase 38 64.0 2.2 7.5E-05 36.3 1.2 14 51-64 46-59 (350)
292 3iev_A GTP-binding protein ERA 63.9 1.6 5.4E-05 37.6 0.2 15 50-64 10-24 (308)
293 2npi_A Protein CLP1; CLP1-PCF1 63.8 1.9 6.6E-05 39.7 0.8 16 49-64 137-152 (460)
294 3q85_A GTP-binding protein REM 63.8 1.8 6.3E-05 32.3 0.6 12 53-64 5-16 (169)
295 1g16_A RAS-related protein SEC 63.6 1.8 6.2E-05 32.2 0.5 18 195-212 149-166 (170)
296 3lxw_A GTPase IMAP family memb 63.6 1.5 5.1E-05 36.4 0.0 14 51-64 22-35 (247)
297 1fnn_A CDC6P, cell division co 63.5 2.2 7.6E-05 36.7 1.2 13 52-64 46-58 (389)
298 2yhs_A FTSY, cell division pro 63.5 2 6.8E-05 40.3 0.9 16 49-64 292-307 (503)
299 3pfi_A Holliday junction ATP-d 63.2 2.4 8.1E-05 36.2 1.3 14 51-64 56-69 (338)
300 2rcn_A Probable GTPase ENGC; Y 62.9 2.1 7.1E-05 38.3 0.8 15 50-64 215-229 (358)
301 2fu5_C RAS-related protein RAB 62.9 2.7 9.4E-05 31.9 1.5 14 52-65 10-23 (183)
302 1u8z_A RAS-related protein RAL 62.7 2 6.8E-05 31.7 0.6 13 52-64 6-18 (168)
303 2px0_A Flagellar biosynthesis 62.7 2.4 8.3E-05 36.5 1.2 16 49-64 104-119 (296)
304 3ux8_A Excinuclease ABC, A sub 62.5 2.1 7.1E-05 40.9 0.9 18 49-66 43-60 (670)
305 1wms_A RAB-9, RAB9, RAS-relate 62.4 2 6.9E-05 32.3 0.6 13 52-64 9-21 (177)
306 1z0j_A RAB-22, RAS-related pro 62.3 2 6.9E-05 31.9 0.6 13 52-64 8-20 (170)
307 3eie_A Vacuolar protein sortin 62.2 2.1 7.1E-05 36.8 0.7 14 51-64 52-65 (322)
308 1sxj_E Activator 1 40 kDa subu 62.2 2 6.8E-05 36.8 0.6 12 53-64 39-50 (354)
309 1dek_A Deoxynucleoside monopho 62.1 0.53 1.8E-05 39.8 -3.1 66 145-211 168-240 (241)
310 1r8s_A ADP-ribosylation factor 62.0 2.1 7.1E-05 31.8 0.6 12 53-64 3-14 (164)
311 3asz_A Uridine kinase; cytidin 61.9 20 0.0007 27.9 6.6 15 50-64 6-20 (211)
312 1c1y_A RAS-related protein RAP 61.8 2.1 7.2E-05 31.7 0.6 13 52-64 5-17 (167)
313 2erx_A GTP-binding protein DI- 61.8 2.1 7.2E-05 31.8 0.6 13 52-64 5-17 (172)
314 2qby_B CDC6 homolog 3, cell di 61.7 2.7 9.2E-05 36.2 1.4 15 50-64 45-59 (384)
315 1z08_A RAS-related protein RAB 61.6 2.2 7.4E-05 31.8 0.6 13 52-64 8-20 (170)
316 1xwi_A SKD1 protein; VPS4B, AA 61.5 2.2 7.4E-05 37.0 0.7 14 51-64 46-59 (322)
317 3gj0_A GTP-binding nuclear pro 61.5 1.3 4.3E-05 35.3 -0.8 13 52-64 17-29 (221)
318 1nrj_B SR-beta, signal recogni 61.4 2.1 7.3E-05 33.8 0.6 14 51-64 13-26 (218)
319 3tw8_B RAS-related protein RAB 61.3 2.2 7.6E-05 32.1 0.6 13 52-64 11-23 (181)
320 1um8_A ATP-dependent CLP prote 61.1 2.7 9.4E-05 36.7 1.3 15 50-64 72-86 (376)
321 4dcu_A GTP-binding protein ENG 61.1 1.6 5.3E-05 39.8 -0.3 34 51-84 24-76 (456)
322 1svi_A GTP-binding protein YSX 61.0 3 0.0001 32.0 1.4 15 50-64 23-37 (195)
323 1vma_A Cell division protein F 61.0 2.3 8E-05 36.9 0.8 37 188-224 250-287 (306)
324 2r62_A Cell division protease 61.0 1.1 3.7E-05 37.1 -1.3 14 51-64 45-58 (268)
325 2lkc_A Translation initiation 60.9 2.3 7.8E-05 32.1 0.6 15 50-64 8-22 (178)
326 1yqt_A RNAse L inhibitor; ATP- 60.8 3.2 0.00011 38.9 1.7 18 47-64 44-61 (538)
327 1w1w_A Structural maintenance 60.8 2.6 8.9E-05 37.8 1.1 15 50-64 26-40 (430)
328 3euj_A Chromosome partition pr 60.7 2.3 7.7E-05 39.6 0.7 14 51-64 30-43 (483)
329 1upt_A ARL1, ADP-ribosylation 60.7 2.3 7.7E-05 31.8 0.6 14 51-64 8-21 (171)
330 3iby_A Ferrous iron transport 60.4 1.7 6E-05 36.4 -0.1 13 52-64 3-15 (256)
331 2fn4_A P23, RAS-related protei 60.3 2.3 7.7E-05 32.0 0.5 20 195-214 156-175 (181)
332 3pqc_A Probable GTP-binding pr 60.3 2.3 7.8E-05 32.5 0.5 15 50-64 23-37 (195)
333 3lxx_A GTPase IMAP family memb 60.1 2.3 7.9E-05 34.6 0.6 14 51-64 30-43 (239)
334 2qm8_A GTPase/ATPase; G protei 60.0 2.6 8.9E-05 36.9 0.9 16 49-64 54-69 (337)
335 2qnr_A Septin-2, protein NEDD5 59.8 2.1 7.3E-05 36.7 0.4 13 52-64 20-32 (301)
336 1tf7_A KAIC; homohexamer, hexa 59.8 2.5 8.4E-05 39.2 0.8 16 49-64 38-53 (525)
337 1ni3_A YCHF GTPase, YCHF GTP-b 59.8 2.5 8.5E-05 38.2 0.8 26 50-75 20-62 (392)
338 3lda_A DNA repair protein RAD5 59.8 2.5 8.5E-05 38.2 0.8 15 50-64 178-192 (400)
339 1puj_A YLQF, conserved hypothe 59.8 2.9 9.8E-05 35.7 1.2 14 51-64 121-134 (282)
340 2y8e_A RAB-protein 6, GH09086P 59.7 2.4 8.1E-05 31.8 0.5 13 52-64 16-28 (179)
341 1moz_A ARL1, ADP-ribosylation 59.7 2.2 7.5E-05 32.4 0.4 14 51-64 19-32 (183)
342 3bc1_A RAS-related protein RAB 59.6 2.4 8.3E-05 32.2 0.6 13 52-64 13-25 (195)
343 1r2q_A RAS-related protein RAB 59.6 2.4 8.3E-05 31.4 0.6 13 52-64 8-20 (170)
344 4dsu_A GTPase KRAS, isoform 2B 59.6 2.4 8.3E-05 32.2 0.6 13 52-64 6-18 (189)
345 1p5z_B DCK, deoxycytidine kina 59.6 2.4 8.2E-05 35.2 0.6 67 145-211 174-258 (263)
346 1fzq_A ADP-ribosylation factor 59.5 2.4 8.1E-05 32.7 0.5 14 51-64 17-30 (181)
347 2zts_A Putative uncharacterize 59.5 2.6 9E-05 33.8 0.8 15 50-64 30-44 (251)
348 1mky_A Probable GTP-binding pr 59.5 2.8 9.5E-05 37.8 1.1 13 52-64 3-15 (439)
349 1ojl_A Transcriptional regulat 59.3 3.1 0.00011 35.7 1.3 15 50-64 25-39 (304)
350 2r2a_A Uncharacterized protein 59.0 2.5 8.5E-05 34.4 0.6 13 52-64 7-19 (199)
351 3ihw_A Centg3; RAS, centaurin, 58.8 2.6 8.8E-05 32.7 0.6 13 52-64 22-34 (184)
352 2hxs_A RAB-26, RAS-related pro 58.7 2.6 8.8E-05 31.7 0.6 13 52-64 8-20 (178)
353 3gee_A MNME, tRNA modification 58.5 3.1 0.0001 38.5 1.2 35 52-86 235-288 (476)
354 2vp4_A Deoxynucleoside kinase; 58.3 18 0.00061 29.2 5.8 17 48-64 18-34 (230)
355 2bme_A RAB4A, RAS-related prot 58.1 2.6 8.9E-05 32.0 0.5 13 52-64 12-24 (186)
356 1sxj_C Activator 1 40 kDa subu 58.1 2.6 9E-05 36.3 0.6 12 53-64 49-60 (340)
357 1f6b_A SAR1; gtpases, N-termin 57.7 2.5 8.5E-05 33.2 0.4 13 52-64 27-39 (198)
358 1mh1_A RAC1; GTP-binding, GTPa 57.5 2.8 9.4E-05 31.7 0.6 13 52-64 7-19 (186)
359 3clv_A RAB5 protein, putative; 57.4 2.8 9.5E-05 32.0 0.6 13 52-64 9-21 (208)
360 1pzn_A RAD51, DNA repair and r 57.3 2.7 9.1E-05 37.0 0.5 15 50-64 131-145 (349)
361 2bov_A RAla, RAS-related prote 57.3 2.8 9.5E-05 32.4 0.6 13 52-64 16-28 (206)
362 1h65_A Chloroplast outer envel 57.1 2.3 7.9E-05 35.5 0.1 14 51-64 40-53 (270)
363 3ozx_A RNAse L inhibitor; ATP 57.0 3 0.0001 39.2 0.8 16 49-64 293-308 (538)
364 3t1o_A Gliding protein MGLA; G 57.0 2.8 9.7E-05 31.9 0.6 13 52-64 16-28 (198)
365 3l0i_B RAS-related protein RAB 57.0 4.5 0.00016 31.4 1.8 14 52-65 35-48 (199)
366 3cr8_A Sulfate adenylyltranfer 57.0 1.8 6E-05 41.0 -0.7 25 188-212 514-540 (552)
367 3j16_B RLI1P; ribosome recycli 57.0 3.3 0.00011 39.6 1.1 18 47-64 100-117 (608)
368 3bk7_A ABC transporter ATP-bin 56.9 3.7 0.00013 39.2 1.5 18 47-64 114-131 (607)
369 3qks_A DNA double-strand break 56.9 2.8 9.7E-05 33.7 0.6 14 51-64 24-37 (203)
370 3cf2_A TER ATPase, transitiona 56.8 7.3 0.00025 38.5 3.6 58 51-130 239-302 (806)
371 1vec_A ATP-dependent RNA helic 56.8 4.5 0.00015 31.6 1.8 14 51-64 41-54 (206)
372 3o8b_A HCV NS3 protease/helica 56.8 6.7 0.00023 38.0 3.3 32 33-64 215-246 (666)
373 1lkx_A Myosin IE heavy chain; 56.7 2.8 9.5E-05 40.9 0.6 14 51-64 95-108 (697)
374 2efe_B Small GTP-binding prote 56.6 3 0.0001 31.5 0.6 13 52-64 14-26 (181)
375 2z4s_A Chromosomal replication 56.5 2.9 0.0001 37.9 0.7 15 50-64 130-144 (440)
376 3kkq_A RAS-related protein M-R 56.5 2.9 0.0001 31.7 0.6 13 52-64 20-32 (183)
377 2qag_C Septin-7; cell cycle, c 56.3 2.9 9.8E-05 38.1 0.6 12 53-64 34-45 (418)
378 2oil_A CATX-8, RAS-related pro 56.2 3 0.0001 32.1 0.6 13 52-64 27-39 (193)
379 2g6b_A RAS-related protein RAB 56.2 3 0.0001 31.4 0.6 13 52-64 12-24 (180)
380 2ocp_A DGK, deoxyguanosine kin 56.1 2.9 0.0001 34.1 0.6 14 51-64 3-16 (241)
381 1m2o_B GTP-binding protein SAR 56.1 2.9 0.0001 32.5 0.5 13 52-64 25-37 (190)
382 2a9k_A RAS-related protein RAL 56.1 3 0.0001 31.5 0.6 13 52-64 20-32 (187)
383 3d8b_A Fidgetin-like protein 1 56.0 3.3 0.00011 36.2 0.9 15 50-64 117-131 (357)
384 3qkt_A DNA double-strand break 55.9 3.1 0.00011 36.1 0.7 14 51-64 24-37 (339)
385 2qp9_X Vacuolar protein sortin 55.7 3 0.0001 36.5 0.7 14 51-64 85-98 (355)
386 2chq_A Replication factor C sm 55.7 3.1 0.00011 34.7 0.6 13 52-64 40-52 (319)
387 4dcu_A GTP-binding protein ENG 55.6 12 0.00042 33.7 4.7 37 50-86 195-250 (456)
388 3bwd_D RAC-like GTP-binding pr 55.5 3.1 0.00011 31.4 0.6 13 52-64 10-22 (182)
389 1m7b_A RND3/RHOE small GTP-bin 55.5 3 0.0001 31.9 0.5 13 52-64 9-21 (184)
390 1z0f_A RAB14, member RAS oncog 55.5 3.1 0.00011 31.1 0.6 14 51-64 16-29 (179)
391 3cbq_A GTP-binding protein REM 55.4 3.1 0.00011 32.6 0.6 13 52-64 25-37 (195)
392 1sxj_A Activator 1 95 kDa subu 55.4 3.7 0.00013 37.9 1.2 15 50-64 77-91 (516)
393 3ozx_A RNAse L inhibitor; ATP 55.4 3.5 0.00012 38.7 1.0 16 49-64 24-39 (538)
394 3con_A GTPase NRAS; structural 55.3 3.1 0.00011 31.8 0.6 19 195-213 167-185 (190)
395 1ii2_A Phosphoenolpyruvate car 55.3 3.9 0.00013 38.5 1.3 24 49-72 212-235 (524)
396 1ko7_A HPR kinase/phosphatase; 55.2 3 0.0001 36.6 0.5 18 50-67 144-161 (314)
397 1ksh_A ARF-like protein 2; sma 55.1 3.2 0.00011 31.7 0.6 14 51-64 19-32 (186)
398 3a1s_A Iron(II) transport prot 55.1 1.9 6.4E-05 36.2 -0.8 13 52-64 7-19 (258)
399 4b4t_K 26S protease regulatory 54.9 3.2 0.00011 38.0 0.6 12 53-64 209-220 (428)
400 3t5g_A GTP-binding protein RHE 54.9 3.2 0.00011 31.5 0.5 13 52-64 8-20 (181)
401 2orw_A Thymidine kinase; TMTK, 54.7 3.5 0.00012 32.7 0.8 15 50-64 3-17 (184)
402 4b4t_M 26S protease regulatory 54.7 3.2 0.00011 38.1 0.6 14 51-64 216-229 (434)
403 2yc2_C IFT27, small RAB-relate 54.6 3.2 0.00011 32.1 0.5 15 52-66 22-36 (208)
404 3m6a_A ATP-dependent protease 54.5 3.5 0.00012 38.5 0.9 15 50-64 108-122 (543)
405 2olr_A Phosphoenolpyruvate car 54.3 4.1 0.00014 38.6 1.3 24 49-72 240-263 (540)
406 3auy_A DNA double-strand break 54.0 3.3 0.00011 36.5 0.6 14 51-64 26-39 (371)
407 4b4t_L 26S protease subunit RP 53.9 3.3 0.00011 38.0 0.6 14 51-64 216-229 (437)
408 3szr_A Interferon-induced GTP- 53.8 2.4 8.3E-05 40.3 -0.4 13 52-64 47-59 (608)
409 2gf9_A RAS-related protein RAB 53.7 3.5 0.00012 31.7 0.6 14 51-64 23-36 (189)
410 2hf9_A Probable hydrogenase ni 53.7 3.4 0.00012 32.8 0.5 14 51-64 39-52 (226)
411 3j16_B RLI1P; ribosome recycli 53.7 3.8 0.00013 39.1 1.0 15 50-64 378-392 (608)
412 2wsm_A Hydrogenase expression/ 53.6 3.5 0.00012 32.6 0.6 14 51-64 31-44 (221)
413 3tkl_A RAS-related protein RAB 53.6 3.5 0.00012 31.6 0.6 21 195-215 163-183 (196)
414 2v26_A Myosin VI; calmodulin-b 53.6 3.4 0.00011 40.8 0.6 14 51-64 141-154 (784)
415 2bcg_Y Protein YP2, GTP-bindin 53.4 3.4 0.00012 32.2 0.5 13 52-64 10-22 (206)
416 1vg8_A RAS-related protein RAB 53.3 3.5 0.00012 31.9 0.6 13 52-64 10-22 (207)
417 1z06_A RAS-related protein RAB 53.3 3.5 0.00012 31.6 0.6 13 52-64 22-34 (189)
418 1zbd_A Rabphilin-3A; G protein 53.2 3.6 0.00012 32.0 0.6 13 52-64 10-22 (203)
419 2a5j_A RAS-related protein RAB 53.2 3.6 0.00012 31.7 0.6 13 52-64 23-35 (191)
420 3c5c_A RAS-like protein 12; GD 53.1 3.6 0.00012 31.8 0.6 13 52-64 23-35 (187)
421 3ch4_B Pmkase, phosphomevalona 53.1 15 0.0005 30.2 4.3 32 182-213 157-191 (202)
422 4b4t_J 26S protease regulatory 53.0 3.5 0.00012 37.5 0.6 23 139-161 304-326 (405)
423 2fh5_B SR-beta, signal recogni 52.9 3.6 0.00012 32.3 0.6 13 52-64 9-21 (214)
424 4bas_A ADP-ribosylation factor 52.9 3.7 0.00013 31.5 0.6 21 195-215 173-193 (199)
425 3rc3_A ATP-dependent RNA helic 52.9 1.7 5.9E-05 42.1 -1.6 15 50-64 155-169 (677)
426 1v5w_A DMC1, meiotic recombina 52.8 3.6 0.00012 35.9 0.7 15 50-64 122-136 (343)
427 2hjg_A GTP-binding protein ENG 52.7 2.6 8.7E-05 38.1 -0.4 33 52-84 5-56 (436)
428 3vfd_A Spastin; ATPase, microt 52.7 3.6 0.00012 36.2 0.6 15 50-64 148-162 (389)
429 1w9i_A Myosin II heavy chain; 52.7 3.5 0.00012 40.6 0.6 14 51-64 173-186 (770)
430 2cjw_A GTP-binding protein GEM 52.6 3.7 0.00013 32.1 0.6 13 52-64 8-20 (192)
431 1kk8_A Myosin heavy chain, str 52.6 3.5 0.00012 41.0 0.6 14 51-64 170-183 (837)
432 1iqp_A RFCS; clamp loader, ext 52.6 3.6 0.00012 34.4 0.6 13 52-64 48-60 (327)
433 2gf0_A GTP-binding protein DI- 52.5 3.6 0.00012 31.6 0.5 14 51-64 9-22 (199)
434 3llu_A RAS-related GTP-binding 52.5 3.6 0.00012 32.0 0.5 15 50-64 20-34 (196)
435 1qvr_A CLPB protein; coiled co 52.4 7 0.00024 38.4 2.7 15 50-64 191-205 (854)
436 2fg5_A RAB-22B, RAS-related pr 52.3 3.7 0.00013 31.8 0.5 13 52-64 25-37 (192)
437 2z43_A DNA repair and recombin 52.3 4 0.00014 35.2 0.8 15 50-64 107-121 (324)
438 2iwr_A Centaurin gamma 1; ANK 52.3 3 0.0001 31.5 -0.0 13 52-64 9-21 (178)
439 1w7j_A Myosin VA; motor protei 52.2 3.6 0.00012 40.7 0.6 14 51-64 157-170 (795)
440 3dz8_A RAS-related protein RAB 52.0 3.7 0.00013 31.6 0.5 19 195-213 170-188 (191)
441 4f4c_A Multidrug resistance pr 52.0 5.6 0.00019 41.3 2.0 73 50-123 1105-1193(1321)
442 1xzp_A Probable tRNA modificat 52.0 3.6 0.00012 38.1 0.5 33 52-84 245-296 (482)
443 1tue_A Replication protein E1; 51.9 3 0.0001 34.7 -0.0 14 51-64 59-72 (212)
444 4db1_A Myosin-7; S1DC, cardiac 51.9 3.7 0.00013 40.5 0.6 14 51-64 172-185 (783)
445 2q3h_A RAS homolog gene family 51.9 3.8 0.00013 31.7 0.6 14 51-64 21-34 (201)
446 1tq4_A IIGP1, interferon-induc 51.9 3.7 0.00013 37.3 0.6 13 52-64 71-83 (413)
447 2fna_A Conserved hypothetical 51.9 3.9 0.00013 34.4 0.7 14 51-64 31-44 (357)
448 1x3s_A RAS-related protein RAB 51.8 3.9 0.00013 31.2 0.6 13 52-64 17-29 (195)
449 2zan_A Vacuolar protein sortin 51.8 3.9 0.00013 37.0 0.7 14 51-64 168-181 (444)
450 2b6h_A ADP-ribosylation factor 51.7 3.8 0.00013 31.9 0.5 13 52-64 31-43 (192)
451 2h57_A ADP-ribosylation factor 51.7 3.8 0.00013 31.5 0.5 14 51-64 22-35 (190)
452 3cnl_A YLQF, putative uncharac 51.7 4.5 0.00016 34.1 1.1 13 52-64 101-113 (262)
453 2qu8_A Putative nucleolar GTP- 51.5 3.9 0.00013 32.7 0.6 14 51-64 30-43 (228)
454 2o5v_A DNA replication and rep 51.4 3.9 0.00013 36.4 0.6 13 52-64 28-40 (359)
455 2il1_A RAB12; G-protein, GDP, 51.4 4 0.00014 31.6 0.6 13 52-64 28-40 (192)
456 4ag6_A VIRB4 ATPase, type IV s 51.4 3.9 0.00013 36.0 0.6 14 51-64 36-49 (392)
457 1zj6_A ADP-ribosylation factor 51.3 3.9 0.00013 31.3 0.5 13 52-64 18-30 (187)
458 2p5s_A RAS and EF-hand domain 51.3 4 0.00014 31.8 0.6 14 51-64 29-42 (199)
459 3reg_A RHO-like small GTPase; 51.2 4 0.00014 31.5 0.6 19 195-213 172-190 (194)
460 2atv_A RERG, RAS-like estrogen 51.2 4 0.00014 31.6 0.6 13 52-64 30-42 (196)
461 3bh0_A DNAB-like replicative h 51.2 4.3 0.00015 35.0 0.8 15 50-64 68-82 (315)
462 4anj_A Unconventional myosin-V 51.0 3.9 0.00013 41.7 0.6 14 51-64 145-158 (1052)
463 3cph_A RAS-related protein SEC 50.9 4.1 0.00014 31.7 0.6 25 195-219 166-190 (213)
464 2ycu_A Non muscle myosin 2C, a 50.7 3.9 0.00013 41.3 0.6 14 51-64 147-160 (995)
465 2o52_A RAS-related protein RAB 50.7 4 0.00014 31.9 0.5 13 52-64 27-39 (200)
466 2gxq_A Heat resistant RNA depe 50.7 4.9 0.00017 31.3 1.0 14 51-64 39-52 (207)
467 1g8x_A Myosin II heavy chain f 50.6 3.9 0.00013 41.5 0.5 14 51-64 173-186 (1010)
468 1zd9_A ADP-ribosylation factor 50.6 4.2 0.00014 31.3 0.6 13 52-64 24-36 (188)
469 1jr3_A DNA polymerase III subu 50.5 4.1 0.00014 34.9 0.6 14 51-64 39-52 (373)
470 3bk7_A ABC transporter ATP-bin 50.5 4.4 0.00015 38.6 0.8 16 49-64 381-396 (607)
471 2e87_A Hypothetical protein PH 50.5 4.6 0.00016 35.2 1.0 14 51-64 168-181 (357)
472 2h17_A ADP-ribosylation factor 50.5 3.8 0.00013 31.3 0.4 14 51-64 22-35 (181)
473 4aby_A DNA repair protein RECN 50.5 1.9 6.5E-05 38.1 -1.6 28 33-64 47-74 (415)
474 1wb9_A DNA mismatch repair pro 50.4 4.6 0.00016 39.8 1.0 17 48-64 605-621 (800)
475 1zu4_A FTSY; GTPase, signal re 50.4 4.5 0.00015 35.2 0.9 15 50-64 105-119 (320)
476 1yqt_A RNAse L inhibitor; ATP- 50.3 4.4 0.00015 37.9 0.8 16 49-64 311-326 (538)
477 2c9o_A RUVB-like 1; hexameric 50.2 4.1 0.00014 36.9 0.6 14 51-64 64-77 (456)
478 4f4c_A Multidrug resistance pr 50.2 4.4 0.00015 42.1 0.9 16 49-64 443-458 (1321)
479 2dpy_A FLII, flagellum-specifi 50.2 4.4 0.00015 37.0 0.8 16 49-64 156-171 (438)
480 2dfs_A Myosin-5A; myosin-V, in 50.2 4.1 0.00014 41.6 0.6 14 51-64 157-170 (1080)
481 1sxj_B Activator 1 37 kDa subu 50.1 4.2 0.00014 33.9 0.6 13 52-64 44-56 (323)
482 3oes_A GTPase rhebl1; small GT 50.1 4.2 0.00014 31.7 0.5 13 52-64 26-38 (201)
483 3i8s_A Ferrous iron transport 50.0 2.6 8.9E-05 35.5 -0.7 13 52-64 5-17 (274)
484 2i1q_A DNA repair and recombin 49.9 4.2 0.00014 34.8 0.6 15 50-64 98-112 (322)
485 3iuy_A Probable ATP-dependent 49.7 5.1 0.00018 32.0 1.0 14 51-64 58-71 (228)
486 2ew1_A RAS-related protein RAB 49.7 4.3 0.00015 32.1 0.5 13 52-64 28-40 (201)
487 2x77_A ADP-ribosylation factor 49.7 4 0.00014 31.3 0.4 13 52-64 24-36 (189)
488 1ewq_A DNA mismatch repair pro 49.7 4.6 0.00016 39.7 0.9 15 50-64 576-590 (765)
489 1i84_S Smooth muscle myosin he 49.6 4.4 0.00015 41.6 0.7 14 51-64 170-183 (1184)
490 2r44_A Uncharacterized protein 49.6 2.9 9.9E-05 35.7 -0.5 14 51-64 47-60 (331)
491 2v6i_A RNA helicase; membrane, 49.6 7.1 0.00024 35.0 2.1 14 51-64 3-16 (431)
492 2qen_A Walker-type ATPase; unk 49.6 4.5 0.00015 34.0 0.7 14 51-64 32-45 (350)
493 3pvs_A Replication-associated 49.4 4.3 0.00015 37.0 0.6 13 52-64 52-64 (447)
494 2j1l_A RHO-related GTP-binding 49.3 4.3 0.00015 32.1 0.5 19 195-213 193-211 (214)
495 2dby_A GTP-binding protein; GD 49.3 5.1 0.00017 35.7 1.0 13 52-64 3-15 (368)
496 3k53_A Ferrous iron transport 49.3 4.4 0.00015 33.7 0.6 13 52-64 5-17 (271)
497 2fv8_A H6, RHO-related GTP-bin 49.2 4.4 0.00015 31.8 0.5 13 52-64 27-39 (207)
498 2atx_A Small GTP binding prote 48.9 4.5 0.00015 31.1 0.5 13 52-64 20-32 (194)
499 1gwn_A RHO-related GTP-binding 48.8 4.5 0.00015 32.1 0.5 13 52-64 30-42 (205)
500 3kl4_A SRP54, signal recogniti 48.3 4.5 0.00015 37.0 0.6 15 50-64 97-111 (433)
No 1
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=100.00 E-value=2.1e-53 Score=378.13 Aligned_cols=190 Identities=71% Similarity=1.063 Sum_probs=170.9
Q ss_pred ecccccccccCCCCCCCCCCccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHH
Q psy10228 31 SRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEK 92 (225)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~ 92 (225)
...++.|+.+... .++..+||||+||+ |+ |||||+||+||+||+|||||+++++|++
T Consensus 83 ~~~~~~YE~V~~~--~~~~~RpvVl~Gp~---K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~ 157 (292)
T 3tvt_A 83 EENVLSYEAVQRL--SINYTRPVIILGPL---KDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMER 157 (292)
T ss_dssp ---CCCEEEEEEE--ECSSCCCEEEESTT---HHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHH
T ss_pred cccccchheEEec--cCCCCCeEEEeCCC---HHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHH
Confidence 3456778877653 56788999999995 76 9999999999999999999988999999
Q ss_pred hhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCHHHHH
Q psy10228 93 DIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAK 172 (225)
Q Consensus 93 ~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~ 172 (225)
+|++|.||||++|+||+|||++++|++++++|++|||||+++|+++|+...++|++|||.|||+++|++++++.++++++
T Consensus 158 ~i~~~~flE~a~~~gn~YGT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~e~~~ 237 (292)
T 3tvt_A 158 DIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAK 237 (292)
T ss_dssp HHHTTCEEEEEEETTEEEEEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSCTTHHH
T ss_pred HHhcCceEEEEEEccceeEEehHHHHHHHHcCCcEEEeccchhhhhcccccccceEEEEECCCHHHHHHHHhCCCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999966666667778
Q ss_pred HHHHHHHHHHHhhCCCCcEEEECCCHHHHHHHHHHHHHhccCCceeeeCCCCC
Q psy10228 173 KMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225 (225)
Q Consensus 173 ~rl~~a~k~E~~~~~~fd~vI~Nddleea~~~lk~iI~~~~~~~~WVp~~~~~ 225 (225)
+++.++.++|++++++||+||+|||+++|+++|+++|.+++++++|||++++|
T Consensus 238 ~~~~r~~k~e~e~~~~fD~vIvNddle~a~~~l~~iI~~e~~~~~WVP~~~~l 290 (292)
T 3tvt_A 238 KTYERAIKMEQEFGEYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIWVPSKESL 290 (292)
T ss_dssp HHHHHHHHHHHHHTTTCSEEECCSSHHHHHHHHHHHHHHHTCSEEEEEC----
T ss_pred HHHHHHHHHHHhhhhhCCEEEECcCHHHHHHHHHHHHHHhhCCCeEecCcccc
Confidence 88888888899999999999999999999999999999999999999999886
No 2
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=100.00 E-value=6.9e-52 Score=368.51 Aligned_cols=189 Identities=58% Similarity=0.948 Sum_probs=176.3
Q ss_pred cccccccccCCCCCCCCCCccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHh
Q psy10228 32 RKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKD 93 (225)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~ 93 (225)
..+|.|+-+... ..+..++|||+|| ||+ ||||||||+||+||+|||||.|+++|+++
T Consensus 89 ~~~~~Ye~V~~~--~~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~ 163 (295)
T 1kjw_A 89 DSVLSYETVTQM--EVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKD 163 (295)
T ss_dssp CCCCCEEEEEEE--ECCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHH
T ss_pred CCCCCcceeeee--cCCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHH
Confidence 346677766542 3466799999999 687 89999999999999999999679999999
Q ss_pred hhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCHHHHHH
Q psy10228 94 IQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKK 173 (225)
Q Consensus 94 i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~~ 173 (225)
|++|.||||++|+||+|||++++|++++++|++||||++++|+++++...++|++|||.|||.++|++|++|++++++++
T Consensus 164 i~~g~flE~~~~~g~~YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~L~~R~t~~~i~~ 243 (295)
T 1kjw_A 164 IQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARK 243 (295)
T ss_dssp HHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHHHCTTSCHHHHHH
T ss_pred HHCCCcEEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCcEEEECCCHHHHHHHHHHHHHhccCCceeeeCCCCC
Q psy10228 174 MYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225 (225)
Q Consensus 174 rl~~a~k~E~~~~~~fd~vI~Nddleea~~~lk~iI~~~~~~~~WVp~~~~~ 225 (225)
|+++|.++|+.+.+.||++|+||++++|+++|+.+|..++++|+|||++++|
T Consensus 244 rl~~a~~~e~~~~~~fd~vivNd~le~a~~~l~~ii~~~~~~~~Wvp~~~~~ 295 (295)
T 1kjw_A 244 AFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARERL 295 (295)
T ss_dssp HHHHHHHHHHHHGGGCSEEECCSSHHHHHHHHHHHHHHHSCSEEEEECSCCC
T ss_pred HHHHHHHHHHhccccCeEEEECcCHHHHHHHHHHHHHhccCCCEEeeCCCCC
Confidence 9999977889999999999999999999999999999999999999999986
No 3
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=100.00 E-value=3e-50 Score=336.65 Aligned_cols=161 Identities=32% Similarity=0.536 Sum_probs=149.2
Q ss_pred CccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee
Q psy10228 50 QEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG 111 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG 111 (225)
.|||||+|||||||+ ||||||||+||+||+||||| |+++|++++++|.|+||++|+||+||
T Consensus 1 ~RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fv-s~~eF~~~i~~g~flE~~~~~g~~YG 79 (186)
T 1ex7_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFV-SVDEFKSMIKNNEFIEWAQFSGNYYG 79 (186)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEee-cHHHHHHHHHcCCEEEEEEEcCceee
Confidence 379999999999998 99999999999999999999 99999999999999999999999999
Q ss_pred ecHHHHHHHHHcCCeEEEEccHHHHHHHHhh-ccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhh--
Q psy10228 112 TSVASVRDVAEKGKHCILDVSGNAIKRLQVA-SLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEF-- 185 (225)
Q Consensus 112 Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~-~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~-- 185 (225)
|++++|++++++|++||+|++++|++.++.. .+.|++|||.|||.++|++ |+.|+ ++++|++||.+|. .|+.+
T Consensus 80 t~~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~-~e~~~~~ 158 (186)
T 1ex7_A 80 STVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQ-AELAYAE 158 (186)
T ss_dssp EEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHH-HHHHHHT
T ss_pred eecceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHhhcc
Confidence 9999999999999999999999999999863 5678999999999999997 99888 5789999999995 46554
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHHhc
Q psy10228 186 GEFFTAVVQGDMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 186 ~~~fd~vI~Nddleea~~~lk~iI~~~ 212 (225)
.+.||+||+|||+++|+++|++||..+
T Consensus 159 ~~~fD~vIvNddle~a~~~l~~iI~ae 185 (186)
T 1ex7_A 159 TGAHDKVIVNDDLDKAYKELKDFIFAE 185 (186)
T ss_dssp TTCSSEEEECSSHHHHHHHHHHHHTTC
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHHhc
Confidence 457999999999999999999999764
No 4
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=100.00 E-value=1.9e-47 Score=374.68 Aligned_cols=188 Identities=58% Similarity=0.951 Sum_probs=176.6
Q ss_pred ccccccccCCCCCCCCCCccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhh
Q psy10228 33 KFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDI 94 (225)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i 94 (225)
.+|.|+-+... .....++|||+||| |+ |||||+||+||+||+|||||+|+++|+++|
T Consensus 516 ~~~~Ye~V~~~--~~~~~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i 590 (721)
T 2xkx_A 516 SVLSYETVTQM--EVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDI 590 (721)
T ss_pred cCCCceeeecc--cCCCCCEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHH
Confidence 45667766542 45677999999995 76 999999999999999999996799999999
Q ss_pred hCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCHHHHHHH
Q psy10228 95 QNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKM 174 (225)
Q Consensus 95 ~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~~r 174 (225)
++|+||||++|+||+|||++++|++++++|++||||++++|+++|+...++|++|||.|||.++|++|++|++++++++|
T Consensus 591 ~~~~flE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~l~~R~t~~~~~~r 670 (721)
T 2xkx_A 591 RAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKA 670 (721)
T ss_pred hcCCceEEEEECCccceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHHHhccCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcEEEECCCHHHHHHHHHHHHHhccCCceeeeCCCCC
Q psy10228 175 YDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225 (225)
Q Consensus 175 l~~a~k~E~~~~~~fd~vI~Nddleea~~~lk~iI~~~~~~~~WVp~~~~~ 225 (225)
|++|.++|+.+.++||++|+||++++|+++|+++|..++++++|||++++|
T Consensus 671 l~~a~~~e~~~~~~fd~vi~Nd~l~~a~~~l~~~i~~~~~~~~Wvp~~~~~ 721 (721)
T 2xkx_A 671 FDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARERL 721 (721)
T ss_pred HHHHHHHHHhccccCcEEEECcCHHHHHHHHHHHHHhccCCcEEeeccccC
Confidence 999987899999999999999999999999999999999999999999987
No 5
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=9.4e-44 Score=299.92 Aligned_cols=160 Identities=27% Similarity=0.530 Sum_probs=144.5
Q ss_pred CCccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcce
Q psy10228 49 DQEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY 110 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~Y 110 (225)
..++|+|+|||||||+ |||||+||+||++|++|||+ +.++|.+++.++.|+||+++.||+|
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fv-s~~~f~~~i~~~~fle~~~~~~n~Y 96 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFI-STEEMTRNISANEFLEFGSYQGNMF 96 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEEC-CHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceec-cHHHhhhhhhhhhhhhhhhhhceec
Confidence 4579999999999998 89999999999999999999 9999999999999999999999999
Q ss_pred eecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCH--HHHHHHHHHHHHHHHhhCCC
Q psy10228 111 GTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTE--EQAKKMYDRSMKMEQEFGEF 188 (225)
Q Consensus 111 GTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~se--eei~~rl~~a~k~E~~~~~~ 188 (225)
||++++|++++++|++||||++++|++.++.....|++|||.|||++ |+++ +.+.+|++ +++..+.+.
T Consensus 97 Gt~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps~~-------~~~e~~~~i~~r~~---~~~~~~~~~ 166 (197)
T 3ney_A 97 GTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQG-------TQTEALQQLQKDSE---AIRSQYAHY 166 (197)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECCBS-------SCCHHHHHHHHHHH---HHHHHHGGG
T ss_pred ccchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCCcc-------ccchHHHHHHHHHH---HHHHhhccC
Confidence 99999999999999999999999999999877778899999999963 5554 45555654 345667889
Q ss_pred CcEEEECCCHHHHHHHHHHHHHhccCCceee
Q psy10228 189 FTAVVQGDMPEDIYQKVKEVIQEQSGPSIWV 219 (225)
Q Consensus 189 fd~vI~Nddleea~~~lk~iI~~~~~~~~WV 219 (225)
||++|+|||+++|+++|+.+|..++++|+||
T Consensus 167 fd~vivNd~l~~a~~~l~~ii~~~~~~pqWv 197 (197)
T 3ney_A 167 FDLSLVNNGVDETLKKLQEAFDQACSSPQWV 197 (197)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHHCCCCCC--
T ss_pred CCEEEECCCHHHHHHHHHHHHHHccCCCCCC
Confidence 9999999999999999999999999999998
No 6
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=100.00 E-value=6.8e-39 Score=300.54 Aligned_cols=160 Identities=26% Similarity=0.473 Sum_probs=135.9
Q ss_pred cccccccccCCCCCCCCCCccEEEEccCCCCCC------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcE
Q psy10228 32 RKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLF 99 (225)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~F 99 (225)
..+|.|+.+.. ..++..++|||+||||+|=. ++||| ||+||+||+||||
T Consensus 208 ~~~~~YEeV~~--~~~~~~r~iVlsGPsG~Gl~~~Ll~~~p~~f~s~~TR-pR~gE~dG~~Y~F---------------- 268 (468)
T 3shw_A 208 TKFPAYERVVL--REAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKSE-PRDAGTDQRSSGI---------------- 268 (468)
T ss_dssp CCCCSEEEEEE--ECCSSCCCEEEESTTHHHHHHHHHHHCTTTEEECCCB-C----------CB----------------
T ss_pred ccCCCcceeEc--ccCCCCCEEEEECCCHHHHHHHHHHhCCCceeeecCC-CCCcccccccCCc----------------
Confidence 37899998876 35778899999999999821 78999 9999999999999
Q ss_pred EEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC---CHHHHHHHHH
Q psy10228 100 IEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM---TEEQAKKMYD 176 (225)
Q Consensus 100 iE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~---seeei~~rl~ 176 (225)
|++++|++++++|++|||||+++|+++|+...++|++|||.|||+++|+++++|+ +++.+++|++
T Consensus 269 ------------Ts~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~ 336 (468)
T 3shw_A 269 ------------IRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYE 336 (468)
T ss_dssp ------------CCHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECSCHHHHHHHHHHHCTTCCCCHHHHHH
T ss_pred ------------ccHHHHHHHHHCCCeEEEEeCHHHHHHHHhcCCCCEEEEEeCcCHHHHHHHHhccCCCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999877765 4568899999
Q ss_pred HHHHHHHhhCCCCcEEEECCCH-HHHHHHHHHHHHhccCCceeeeCC
Q psy10228 177 RSMKMEQEFGEFFTAVVQGDMP-EDIYQKVKEVIQEQSGPSIWVPSK 222 (225)
Q Consensus 177 ~a~k~E~~~~~~fd~vI~Nddl-eea~~~lk~iI~~~~~~~~WVp~~ 222 (225)
.|.++|+.|+++||+||+||++ ++||++|+.+|..++++|+|||+.
T Consensus 337 ~a~~~e~~~~~~fD~vIvNddl~d~a~~~L~~ii~~~~~~~~WvP~~ 383 (468)
T 3shw_A 337 RSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSEG 383 (468)
T ss_dssp HHHHHHHHHGGGCSEEEECBTTBCHHHHHHHHHHHHHHTSCEEEEC-
T ss_pred HHHHHHHhhhccCCEEEECCCcHHHHHHHHHHHHHHhcCCCEEeCCc
Confidence 9988899999999999999999 599999999999999999999986
No 7
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=100.00 E-value=2.7e-38 Score=290.81 Aligned_cols=160 Identities=25% Similarity=0.470 Sum_probs=141.3
Q ss_pred ecccccccccCCCCCCCCCCccEEEEccCCCCCC-------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCC
Q psy10228 31 SRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT-------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNH 97 (225)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~-------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~ 97 (225)
...+|.|+.+.. ..++..++|||+|||| -+ ..|||+||+||+||+|||||
T Consensus 215 ~~~~~~YE~V~~--~~~~~~r~iVlsGPsg--~tl~~~L~~~~p~~~~~~tr~pR~gE~dG~~Y~Fv------------- 277 (391)
T 3tsz_A 215 QTKFPAYERVVL--REAGFLRPVTIFGPIA--DVAREKLAREEPDIYQIAKSEPRDAGTDQRSSGII------------- 277 (391)
T ss_dssp --CCCSEEEEEE--EECSSCCCEEEESTTH--HHHHHHHHHHCTTTEEECCCCCCCSSSCCC--CCC-------------
T ss_pred cccCCCcceEEC--cCCCCCCEEEEECCCH--HHHHHHHHhhCccccccccCCCCCcccCCccCCcC-------------
Confidence 457899998875 3467889999999999 23 44899999999999999998
Q ss_pred cEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC---CHHHHHHH
Q psy10228 98 LFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM---TEEQAKKM 174 (225)
Q Consensus 98 ~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~---seeei~~r 174 (225)
++++|++++++|++|||||+++|+++|+...++|++|||.|||+++|+++++|+ +++.+++|
T Consensus 278 ---------------~~~~V~~~~~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~ 342 (391)
T 3tsz_A 278 ---------------RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKL 342 (391)
T ss_dssp ---------------CHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECCCHHHHHHHHHHHCSSCCCCHHHH
T ss_pred ---------------cHHHHHHHHHcCCEEEEEeCHHHHHHHHhCCCCCEEEEEeCcCHHHHHHHHhcCCCCCHHHHHHH
Confidence 689999999999999999999999999999999999999999999999877775 35678888
Q ss_pred HHHHHHHHHhhCCCCcEEEECCCHH-HHHHHHHHHHHhccCCceeeeCC
Q psy10228 175 YDRSMKMEQEFGEFFTAVVQGDMPE-DIYQKVKEVIQEQSGPSIWVPSK 222 (225)
Q Consensus 175 l~~a~k~E~~~~~~fd~vI~Nddle-ea~~~lk~iI~~~~~~~~WVp~~ 222 (225)
++.|.++|+.|+++||++|+|||++ +||++|+.+|..++++|+|||+.
T Consensus 343 ~~~a~~~e~~~~~~fd~vivNd~l~~~a~~~l~~ii~~~~~~~~Wvp~~ 391 (391)
T 3tsz_A 343 YERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSEG 391 (391)
T ss_dssp HHHHHHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHHHHHSEEEEEC-
T ss_pred HHHHHHHHHhccccCcEEEECCCcHHHHHHHHHHHHHHhcCCCeeccCC
Confidence 9999888999999999999999998 79999999999999999999973
No 8
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=100.00 E-value=2.4e-35 Score=247.28 Aligned_cols=165 Identities=24% Similarity=0.304 Sum_probs=146.8
Q ss_pred CCCccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcc
Q psy10228 48 SDQEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNL 109 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~ 109 (225)
...++|+|+|||||||| ++|||+||++|.+|++|||+ +.++|..++..+.|+||+++.||+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~-~~~~f~~~~~~~~~le~~~~~~~~ 84 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFR-SREVFEQAIKDGKMLEYAEYVGNY 84 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEe-cHHHHHHHHhcCcEEEEEEEcccc
Confidence 34678999999999998 89999999999999999999 999999999999999999999999
Q ss_pred eeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhC
Q psy10228 110 YGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFG 186 (225)
Q Consensus 110 YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~ 186 (225)
|||+...|++++++|++||+|++++|+..++.....|.+||+.|||.++|++ |.+|+ +++++++|++++. .|..+.
T Consensus 85 yg~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~-~e~~~~ 163 (208)
T 3tau_A 85 YGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAK-KEIEMM 163 (208)
T ss_dssp EEEEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHH-HHHHHG
T ss_pred CCCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHhh
Confidence 9999999999999999999999999998887665667899999999888876 87777 4688999999985 467778
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHHhccC
Q psy10228 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSG 214 (225)
Q Consensus 187 ~~fd~vI~Nddleea~~~lk~iI~~~~~ 214 (225)
+.||++|+||++++++.+|..+|.....
T Consensus 164 ~~~d~vivN~~~~~~~~~l~~~i~~~~~ 191 (208)
T 3tau_A 164 ASYDYAVVNDVVANAVQKIKGIVETEHL 191 (208)
T ss_dssp GGSSEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCEEEECcCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999987643
No 9
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=100.00 E-value=4.2e-35 Score=241.26 Aligned_cols=160 Identities=33% Similarity=0.545 Sum_probs=125.3
Q ss_pred ccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceee
Q psy10228 51 EPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGT 112 (225)
Q Consensus 51 ~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGT 112 (225)
++++|+|||||||| +||||+||+||++|.+|+|+ +.+.|..++..+.|+||+++.|++||+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~yg~ 80 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFV-SVDEFKSMIKNNEFIEWAQFSGNYYGS 80 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeec-CHHHHHHHHhhcceeeEEEEeceeccC
Confidence 57999999999999 79999999999999999999 999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCeEEEEccHHHHHHHHh-hccCCeEEEEecCCHHHHHH-HhccCC--HHHHHHHHHHHHHHHHhhC--
Q psy10228 113 SVASVRDVAEKGKHCILDVSGNAIKRLQV-ASLYPVAIFIKPKSVESIME-MNKRMT--EEQAKKMYDRSMKMEQEFG-- 186 (225)
Q Consensus 113 s~~sV~~v~~~gk~~ildv~~~gvk~L~~-~~~~Pi~IFI~pps~~~L~~-L~~R~s--eeei~~rl~~a~k~E~~~~-- 186 (225)
+.++|++++++|++|++|++.+|++.++. ....+++|||.||+.+.|++ |..|++ ++++++||.++. .|+.+.
T Consensus 81 ~~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~-~~~~~~~~ 159 (186)
T 3a00_A 81 TVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQ-AELAYAET 159 (186)
T ss_dssp EHHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC----------------------------------C
T ss_pred cHHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHhhcc
Confidence 99999999999999999999999999997 77888999999999888886 888874 578999999985 456555
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHHhc
Q psy10228 187 EFFTAVVQGDMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 187 ~~fd~vI~Nddleea~~~lk~iI~~~ 212 (225)
+.||++|+||++++++.+|..+|..+
T Consensus 160 ~~~d~vi~nd~~~~a~~~l~~~i~~~ 185 (186)
T 3a00_A 160 GAHDKVIVNDDLDKAYKELKDFIFAE 185 (186)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHTTC
T ss_pred cCCcEEEECcCHHHHHHHHHHHHHhc
Confidence 89999999999999999999999754
No 10
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=100.00 E-value=9.7e-34 Score=232.24 Aligned_cols=156 Identities=24% Similarity=0.466 Sum_probs=135.8
Q ss_pred CccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee
Q psy10228 50 QEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG 111 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG 111 (225)
+++++|+|||||||| +||||+||.+|.+|++|+|+ +.++|..++.++.|++++.+.+|+||
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~-~~~~~~~~~~~~~~l~~~~~~~n~yg 83 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFV-SHDQMMQDISNNEYLEYGSHEDAMYG 83 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEe-CHHHHHHHHHcCCceEEEEEcCcccc
Confidence 468999999999999 89999999999999999999 99999999999999999999999999
Q ss_pred ecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCHHHHHHHHHHHH-HHHHhhCCCCc
Q psy10228 112 TSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSM-KMEQEFGEFFT 190 (225)
Q Consensus 112 Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~~rl~~a~-k~E~~~~~~fd 190 (225)
++.++|++++++|++||+|++.+|++.++.....+++|||.||+.+.| .+| ++++ +|+.++. +++..+.+.||
T Consensus 84 ~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~p~~~~l---~~R--~~~i-~r~~~~~~~~~~~~~~~~d 157 (180)
T 1kgd_A 84 TKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPG---LNE--DESL-QRLQKESDILQRTYAHYFD 157 (180)
T ss_dssp EEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTT---SCC--SHHH-HHHHHHHHHHHHHHGGGCS
T ss_pred ccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCCCcEEEEEECCCHHHH---Hhh--HHHH-HHHHHHHHHHHHhhhCCCc
Confidence 999999999999999999999999998876545678999999997764 556 5667 5677663 34446788999
Q ss_pred EEEECCCHHHHHHHHHHHHHhc
Q psy10228 191 AVVQGDMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 191 ~vI~Nddleea~~~lk~iI~~~ 212 (225)
++|+||++++++++|..+|...
T Consensus 158 ~~i~n~~~~~~~~~l~~~i~~~ 179 (180)
T 1kgd_A 158 LTIINNEIDETIRHLEEAVELV 179 (180)
T ss_dssp EEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHh
Confidence 9999999999999999999764
No 11
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=100.00 E-value=7.7e-32 Score=229.60 Aligned_cols=162 Identities=22% Similarity=0.328 Sum_probs=147.9
Q ss_pred CccEEEEccCCCCCC-------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcce
Q psy10228 50 QEPFMLCYTQDDPTT-------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY 110 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~-------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~Y 110 (225)
+++++|+|||||||| ++|||+||++|.+|++|+|+ +.+.|..++..|.|+||..+.|++|
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq-~~~~f~~~~~~~~f~E~~~~~~~~y 94 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFV-NHDEFKEMISRDAFLEHAEVFGNYY 94 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEEC-CHHHHHHHHhcCHHHHHHHHHhccC
Confidence 569999999999998 68999999999999999999 9999999999999999999999999
Q ss_pred eecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhCC
Q psy10228 111 GTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFGE 187 (225)
Q Consensus 111 GTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~~ 187 (225)
||+.+.|++++++|++||||+|+++.+.+...-..+.+|||.|++.+.+++ |..|+ +++++.+|+.+|. .|+.+.+
T Consensus 95 g~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl~~a~-~e~~~~~ 173 (219)
T 1s96_A 95 GTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAV-AEMSHYA 173 (219)
T ss_dssp EEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHH-HHHTTGG
T ss_pred CCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHHhhcc
Confidence 999999999999999999999999998887543346899999999999987 88877 5789999999984 5787788
Q ss_pred CCcEEEECCCHHHHHHHHHHHHHhcc
Q psy10228 188 FFTAVVQGDMPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 188 ~fd~vI~Nddleea~~~lk~iI~~~~ 213 (225)
.||++|+||++++|+.+|+.+|..+.
T Consensus 174 ~~d~~i~Nd~l~~a~~~l~~ii~~~~ 199 (219)
T 1s96_A 174 EYDYLIVNDDFDTALTDLKTIIRAER 199 (219)
T ss_dssp GSSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997653
No 12
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=100.00 E-value=1.3e-31 Score=223.06 Aligned_cols=162 Identities=25% Similarity=0.431 Sum_probs=144.2
Q ss_pred CccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee
Q psy10228 50 QEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG 111 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG 111 (225)
..+|+|+|||||||| +||||+||.+|++|.+|+|+ +.++|..++.+|.|++++++.|++||
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFV-DKDDFERKLKEGQFLEFDKYANNFYG 90 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEEC-CHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeC-CHHHHHHHHHcCCCEEeHHhCCCeec
Confidence 468999999999998 69999999999999999999 99999999999999999999999999
Q ss_pred ecHHHHHHHHHcCCeEEEEccHHHHHHHHhhcc--CCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHh--
Q psy10228 112 TSVASVRDVAEKGKHCILDVSGNAIKRLQVASL--YPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQE-- 184 (225)
Q Consensus 112 Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~--~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~-- 184 (225)
++.++|++++++|+.||+|++++|++.++.... .+++|||.|++.+.|.+ +..|. +++++.+|+.++. .+..
T Consensus 91 ~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~~~-~~~~~~ 169 (204)
T 2qor_A 91 TLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELT-REMDEA 169 (204)
T ss_dssp EEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHHHHh
Confidence 999999999999999999999999988864322 35899999889998886 88887 4788999999874 3444
Q ss_pred hCCCCcEEEECCCHHHHHHHHHHHHHhcc
Q psy10228 185 FGEFFTAVVQGDMPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 185 ~~~~fd~vI~Nddleea~~~lk~iI~~~~ 213 (225)
+...||++|+|+++++++++|.++|....
T Consensus 170 ~~~~~d~vi~n~~~e~~~~~i~~~i~~~~ 198 (204)
T 2qor_A 170 DKVGFNYFIVNDDLARTYAELREYLLGSY 198 (204)
T ss_dssp HHHTCSEEEECSSHHHHHHHHHHHHHHHC
T ss_pred hhccCcEEEECcCHHHHHHHHHHHHHHHh
Confidence 66789999999999999999999998654
No 13
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.97 E-value=6.4e-30 Score=213.09 Aligned_cols=161 Identities=32% Similarity=0.543 Sum_probs=145.1
Q ss_pred CccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee
Q psy10228 50 QEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG 111 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG 111 (225)
.+.++|+|||||||| +||||+|+.||++|.+|+|+ +.++|..++..+.|++++.+.+|+||
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~-~~~~~~~~i~~~~~l~~~~~~~n~~g 82 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFV-TREMMQRDIAAGDFIEHAEFSGNLYG 82 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEc-cHHHHHHHHHcCCCEeeeeecCccCC
Confidence 468999999999999 78999999999999999999 99999999999999999999999999
Q ss_pred ecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhC--
Q psy10228 112 TSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFG-- 186 (225)
Q Consensus 112 Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~-- 186 (225)
++.++|+++++.|+.|+++++++|++.+....+.|..|||.||++..|.+ +..|. ++++|+++|..+.+ ++...
T Consensus 83 ~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~-~~~~a~~ 161 (198)
T 1lvg_A 83 TSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAART-DMESSKE 161 (198)
T ss_dssp EEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHH-HTTGGGS
T ss_pred CCHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHhhc
Confidence 99999999999999999999999998877666678889999999999887 77766 68899999988753 55555
Q ss_pred -CCCcEEEECCCHHHHHHHHHHHHHhc
Q psy10228 187 -EFFTAVVQGDMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 187 -~~fd~vI~Nddleea~~~lk~iI~~~ 212 (225)
..||+||+|+++++++++|.++|...
T Consensus 162 ~~~~D~iivnd~le~a~~~l~~ii~~~ 188 (198)
T 1lvg_A 162 PGLFDLVIINDDLDKAYATLKQALSEE 188 (198)
T ss_dssp TTTCSEEEECSSHHHHHHHHHHHTHHH
T ss_pred cCCceEEEECCCHHHHHHHHHHHHHHH
Confidence 78999999999999999999999764
No 14
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.2e-31 Score=237.87 Aligned_cols=170 Identities=22% Similarity=0.436 Sum_probs=130.3
Q ss_pred ecccccccccCCCCCCCCCCccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcce
Q psy10228 31 SRKFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY 110 (225)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~Y 110 (225)
...||.|+.+... .++..+||||+|| +|+....|-.. | ..-.|-|..+ |.++|++|.||
T Consensus 128 ~~~~~~YE~V~~~--~~~~~RPvVl~GP---~k~~l~~~L~~--~-~P~~F~~~v~---~~r~i~~~~fi---------- 186 (308)
T 3kfv_A 128 QGRYPPYERVVLR--EASFKRPVVILGP---VADIAMQKLTA--E-MPDQFEIAET---VSRTDSPSKII---------- 186 (308)
T ss_dssp HHTCCSEEEEEEE--ECSSCCCEEEEST---THHHHHHHHHH--H-CTTTEEECCC---C--------CC----------
T ss_pred cCCCcCchheecc--ccCCCCeEEEeCc---cHHHHHHHHHH--h-Cccccccccc---ccccccCCCee----------
Confidence 3578999998864 4888999999999 45510000000 0 0112223102 44458888887
Q ss_pred eecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC---CHHHHHHHHHHHHHHHHhhCC
Q psy10228 111 GTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM---TEEQAKKMYDRSMKMEQEFGE 187 (225)
Q Consensus 111 GTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~---seeei~~rl~~a~k~E~~~~~ 187 (225)
++++|++++++|++|||||+++|+++|+.+.++|++|||.|||+++|+++++|+ +++.++++++.|.++|+.+++
T Consensus 187 --s~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~~~pi~IFI~PPS~eeL~~rr~R~~~esee~~~r~~~aa~eiE~~~~~ 264 (308)
T 3kfv_A 187 --KLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQKLRKHSSH 264 (308)
T ss_dssp --CHHHHHHHHHTTCEEEECCCHHHHHHHHHTTCCCEEEEEEESCHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHGG
T ss_pred --cHHHHHHHHHCCCcEEEEECHHHHHHHHhcCCCCEEEEEeCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999987775 355778788888788999999
Q ss_pred CCcEEE-ECCCHHHHHHHHHHHHHhccCCceeeeCCC
Q psy10228 188 FFTAVV-QGDMPEDIYQKVKEVIQEQSGPSIWVPSKD 223 (225)
Q Consensus 188 ~fd~vI-~Nddleea~~~lk~iI~~~~~~~~WVp~~~ 223 (225)
+||+|| +|||+++||++|+.+|..++++|+|||++.
T Consensus 265 ~FD~vI~VNDdle~A~~~L~~iI~~~~~epqWvp~~~ 301 (308)
T 3kfv_A 265 LFTATIPLNGTSDTWYQELKAIIREQQTRPIWTAEDQ 301 (308)
T ss_dssp GCSEEEEECSSSTHHHHHHHHHHHHHTTSEEEEEC--
T ss_pred cCcEEEEcCCCHHHHHHHHHHHHHHhcCCCeEeehhh
Confidence 999999 899999999999999999999999999863
No 15
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.94 E-value=1.1e-25 Score=185.11 Aligned_cols=161 Identities=20% Similarity=0.319 Sum_probs=145.2
Q ss_pred CccEEEEccCCCCCC-----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceee
Q psy10228 50 QEPFMLCYTQDDPTT-----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGT 112 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGT 112 (225)
+.+++|+|||||||| .++||+++.++.+|+.|+|. +...|..++..+.|++++.++++.||+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFI-DETRFQAMVKEGAFLEHATIYERHYGT 85 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEec-cHHHHHHHHhcCcEEeeeeeecccccc
Confidence 468999999999999 78999999999999999999 999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhCCCC
Q psy10228 113 SVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFGEFF 189 (225)
Q Consensus 113 s~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~~~f 189 (225)
+.+.+.++++.|++|++|++++|+..+......+..||+.||+.+.+.+ |..|. +++++++|+.++. .+..+...+
T Consensus 86 ~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~-~~~~~~~~~ 164 (205)
T 3tr0_A 86 EKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAR-EEMAHYKEF 164 (205)
T ss_dssp EHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHH-HHHTTGGGC
T ss_pred hHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHhcccCC
Confidence 9999999999999999999999998887655566899999999988876 88876 5678899999984 456667889
Q ss_pred cEEEECCCHHHHHHHHHHHHHhc
Q psy10228 190 TAVVQGDMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 190 d~vI~Nddleea~~~lk~iI~~~ 212 (225)
|+||+|+++++++++|..+|...
T Consensus 165 d~vi~n~~~~~~~~~l~~~i~~~ 187 (205)
T 3tr0_A 165 DYLVVNDNFDQAVQNLIHIISAE 187 (205)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999754
No 16
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.94 E-value=1e-25 Score=190.52 Aligned_cols=164 Identities=23% Similarity=0.290 Sum_probs=131.3
Q ss_pred CccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee
Q psy10228 50 QEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG 111 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG 111 (225)
+++++|+|||||||| ++|||+|+.||++|.+|+|+ +.+.|..++..+.|++++.+.++.||
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFV-DREEFLRLCSNGEIIEHAEVFGNFYG 105 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEe-cHHHhhhhhhcCceehhhhhccccCC
Confidence 468999999999999 58999999999999999999 99999999999999999999999999
Q ss_pred ecHHHHHHHHHcCCeEEEEccHHHHHHHHhhc-cCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhCC
Q psy10228 112 TSVASVRDVAEKGKHCILDVSGNAIKRLQVAS-LYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFGE 187 (225)
Q Consensus 112 Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~~-~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~~ 187 (225)
++...++++++.|+.|++|++++|...++..- ..+..||+.||+.+.+.+ |..|. +++++++|+.++.. +.++..
T Consensus 106 ~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~-~~~~~~ 184 (231)
T 3lnc_A 106 VPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAF-EISHCE 184 (231)
T ss_dssp EECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEECSCHHHHHHC--------------CHHHHHH-HHTTGG
T ss_pred CCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHhhhc
Confidence 99999999999999999999999988776432 234789999999998877 77775 57788889988753 555667
Q ss_pred CCcEEEECCCHHHHHHHHHHHHHhccCC
Q psy10228 188 FFTAVVQGDMPEDIYQKVKEVIQEQSGP 215 (225)
Q Consensus 188 ~fd~vI~Nddleea~~~lk~iI~~~~~~ 215 (225)
.||+||+|+++++++++|..+|......
T Consensus 185 ~~d~vI~n~~~e~~~~~l~~~i~~~~~~ 212 (231)
T 3lnc_A 185 AYDYVIVNEDIEETADRISNILRAEQMK 212 (231)
T ss_dssp GSSEEEECSSHHHHHHHHHHHHHHHHTB
T ss_pred CCeEEEECcCHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999876544
No 17
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=99.92 E-value=4.9e-26 Score=204.91 Aligned_cols=154 Identities=14% Similarity=0.182 Sum_probs=117.5
Q ss_pred CCccEEEEccCCCCCC--------------------CcccCCCCCCCCCCcce--EEecCHHHHHHhhhCCcEEEEEEeC
Q psy10228 49 DQEPFMLCYTQDDPTT--------------------EDTTRARREYEVDGRDY--HFVSSREQMEKDIQNHLFIEAGQYN 106 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~--------------------s~TTRp~R~~E~dG~dY--~FV~s~eef~~~i~~~~FiE~~~~~ 106 (225)
..+||||+||+++|-. -++||++++.+..++.| +|+ +++.|+..+..+.|+|
T Consensus 141 ~~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~~~-~~~~~e~~~~~~~~~e----- 214 (337)
T 4dey_A 141 SMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPS-KHAIIERSNTRSSLAE----- 214 (337)
T ss_dssp SSCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC--------------------CCCHHH-----
T ss_pred CCCceEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhccc-chhhhcccccccchHH-----
Confidence 4589999999999875 23679999999999986 577 8999999999888876
Q ss_pred CcceeecHHHHHHHHHcCCeEEEEccHH-HHHHHHhhccCCeEEEEecCCHHHHHH-HhccCCH--HHHHHHHHHHHHHH
Q psy10228 107 DNLYGTSVASVRDVAEKGKHCILDVSGN-AIKRLQVASLYPVAIFIKPKSVESIME-MNKRMTE--EQAKKMYDRSMKME 182 (225)
Q Consensus 107 gn~YGTs~~sV~~v~~~gk~~ildv~~~-gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~se--eei~~rl~~a~k~E 182 (225)
|++.++.|.+++++|++|||||+++ |+++++.....|++|||.|||+++|++ |+.|+++ +.+++++++|.+ |
T Consensus 215 ---v~seVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt~~~~rl~~al~~ae~-E 290 (337)
T 4dey_A 215 ---VQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADK-L 290 (337)
T ss_dssp ---HHHHHHHHHHHTTTCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCHHHHTTHHHHHHHHHH-H
T ss_pred ---HHhHHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCchHHHHHHHHHHHHHH-H
Confidence 6788888888999999999999998 999999887889999999999999998 9999973 345666666643 4
Q ss_pred H-hhCCCCcEEEECCCHHHHHHHHHHHHHhc
Q psy10228 183 Q-EFGEFFTAVVQGDMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 183 ~-~~~~~fd~vI~Nddleea~~~lk~iI~~~ 212 (225)
. .+.+.||+||+|||+++||.+|+.+|...
T Consensus 291 ~~~~~~~FDyvIVNDdLe~A~~~L~~iI~~~ 321 (337)
T 4dey_A 291 AQCPPELFDVILDENQLEDACEHLADYLEAY 321 (337)
T ss_dssp HHSCGGGCSEEECCSSHHHHHHHHHHHHHHH
T ss_pred HhhCcccCCEEEECCCHHHHHHHHHHHHHHH
Confidence 4 45899999999999999999999999764
No 18
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.90 E-value=1.9e-22 Score=170.34 Aligned_cols=165 Identities=26% Similarity=0.409 Sum_probs=143.7
Q ss_pred CCccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcce
Q psy10228 49 DQEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLY 110 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~Y 110 (225)
.+++++|+|||||||| ++|||+|+.++.+|++|.|. +.+.|..++..+.|++++.+.++.|
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFI-DKTIFEDKLKNEDFLEYDNYANNFY 100 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEEC-CHHHHHHhhhccchhhhhhcccccC
Confidence 3568999999999999 57899999999999999999 9999999998999999999999999
Q ss_pred eecHHHHHHHHHcCCeEEEEccHHHHHHHHhhc--cCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhh
Q psy10228 111 GTSVASVRDVAEKGKHCILDVSGNAIKRLQVAS--LYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEF 185 (225)
Q Consensus 111 GTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~--~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~ 185 (225)
|++..+++++++.++.+++++++.|.++++.+- ..|..||+.+|++..|.+ +..+. +++.+.+++.++.+ +..+
T Consensus 101 g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~-~~~~ 179 (218)
T 1z6g_A 101 GTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI-ELHE 179 (218)
T ss_dssp EEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH-HHHH
T ss_pred CCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHh
Confidence 999999999999999999999999988776543 345889999999999887 77776 57889999988743 4444
Q ss_pred C--CCCcEEEECCCHHHHHHHHHHHHHhccCC
Q psy10228 186 G--EFFTAVVQGDMPEDIYQKVKEVIQEQSGP 215 (225)
Q Consensus 186 ~--~~fd~vI~Nddleea~~~lk~iI~~~~~~ 215 (225)
. ..||.||+|+++++++..+..+|......
T Consensus 180 ~h~~~~d~iiv~~~~~ea~~~~~~ii~~~~~~ 211 (218)
T 1z6g_A 180 ANLLNFNLSIINDDLTLTYQQLKNYLLNSYIH 211 (218)
T ss_dssp HTTSCCSEEEECSSHHHHHHHHHHHHHHHTTC
T ss_pred hcccCCCEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 4 68999999999999999999999876543
No 19
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.87 E-value=1.4e-21 Score=160.52 Aligned_cols=162 Identities=28% Similarity=0.402 Sum_probs=119.5
Q ss_pred CccEEEEccCCCCCC------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee
Q psy10228 50 QEPFMLCYTQDDPTT------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG 111 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG 111 (225)
...|+|+|||||||| +++||+|+.++.+|.+|+|. +.+.|..++..+.++++..+.+++||
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g 84 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFK-TRDAFEALIKDDQFIEYAEYVGNYYG 84 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEc-CHHHHHHHHHcCCeEEEEeECCeecC
Confidence 468999999999998 67889999899999999999 89999999999999999999999999
Q ss_pred ecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhhCCC
Q psy10228 112 TSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRM--TEEQAKKMYDRSMKMEQEFGEF 188 (225)
Q Consensus 112 Ts~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~--seeei~~rl~~a~k~E~~~~~~ 188 (225)
++.+.++++++.|+.||+|+...+...++..-..+++||+.||+.+.+.+ +..|. +++++.+|+..... +..+...
T Consensus 85 ~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~-~~~~~~~ 163 (207)
T 2j41_A 85 TPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARK-EVEMMNL 163 (207)
T ss_dssp EEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC---------------------------C-GGGGGGG
T ss_pred CCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhcccc
Confidence 99999999999999999999888776666432245889999888777665 77775 45677778776532 3344567
Q ss_pred CcEEEECCCHHHHHHHHHHHHHhcc
Q psy10228 189 FTAVVQGDMPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 189 fd~vI~Nddleea~~~lk~iI~~~~ 213 (225)
+|++|.|+++++++++|.++|....
T Consensus 164 ~d~vI~n~~~e~~~~~i~~~l~~~~ 188 (207)
T 2j41_A 164 YDYVVVNDEVELAKNRIQCIVEAEH 188 (207)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHHHhh
Confidence 8999999999999999999997653
No 20
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.73 E-value=3.7e-16 Score=129.93 Aligned_cols=161 Identities=22% Similarity=0.270 Sum_probs=132.8
Q ss_pred CCCccEEEEccCCCCCC-----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCC--c
Q psy10228 48 SDQEPFMLCYTQDDPTT-----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYND--N 108 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~g--n 108 (225)
..+++++|+|||||||| ++|+|+|+.++.+|+.|.|. +...|..+...+.|+++..+.+ +
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q-~~~~~~~~~~~~~l~~~~~~~~n~~ 96 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFI-DPTRFQQLIDQGELLEWAEIHGGLH 96 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEEC-CHHHHHHHHHTTCEEEEEEEGGGTE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEec-CHHHHHHHHhcCCceeehhhcCchh
Confidence 34678999999999999 67899999889999999999 8999999999999999998888 8
Q ss_pred ceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCC--HHHHHHHHHHHHHHHHhh
Q psy10228 109 LYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMT--EEQAKKMYDRSMKMEQEF 185 (225)
Q Consensus 109 ~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~s--eeei~~rl~~a~k~E~~~ 185 (225)
+||++...+++.++++..|+++++..|+..+........++++..|+...|.+ +..+.+ +..+++++....+ ++..
T Consensus 97 ~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~-~l~~ 175 (207)
T 1znw_A 97 RSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARI-ELAA 175 (207)
T ss_dssp EEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHH-HHHG
T ss_pred hcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhh
Confidence 99999999999999999999999998887665443445789999999888877 777653 5566767766632 4433
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHH
Q psy10228 186 GEFFTAVVQGDMPEDIYQKVKEVIQ 210 (225)
Q Consensus 186 ~~~fd~vI~Nddleea~~~lk~iI~ 210 (225)
...++.+++++|++++......++-
T Consensus 176 ~~g~tvi~vtHdl~~~~~~~d~i~~ 200 (207)
T 1znw_A 176 QGDFDKVVVNRRLESACAELVSLLV 200 (207)
T ss_dssp GGGSSEEEECSSHHHHHHHHHHHHC
T ss_pred hccCcEEEECCCHHHHHHHHHHHHH
Confidence 4568999999999999988887765
No 21
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.13 E-value=6e-12 Score=110.40 Aligned_cols=160 Identities=12% Similarity=0.145 Sum_probs=98.9
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhC-----CcEEEEE-EeCCcceee-cHHHHHHHHH
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQN-----HLFIEAG-QYNDNLYGT-SVASVRDVAE 122 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~-----~~FiE~~-~~~gn~YGT-s~~sV~~v~~ 122 (225)
...|+|+||||||||+...+-.. +. +..+.+| |.+.+...... ..|.+|. .+.+++||+ ....|++.++
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~--~~-~~~~~~I-s~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~ 108 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE--ET-QGNVIVI-DNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSD 108 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH--HT-TTCCEEE-CTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--Hh-CCCeEEE-echHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHh
Confidence 46899999999999932222110 01 1245677 65555422111 0144433 445789998 5677888999
Q ss_pred cCCeEEEEccHHHHH---HHHh-h-c-cCC--eEEEEecCCHHHH---HHH---------hccCCH----HHHHHHHHHH
Q psy10228 123 KGKHCILDVSGNAIK---RLQV-A-S-LYP--VAIFIKPKSVESI---MEM---------NKRMTE----EQAKKMYDRS 178 (225)
Q Consensus 123 ~gk~~ildv~~~gvk---~L~~-~-~-~~P--i~IFI~pps~~~L---~~L---------~~R~se----eei~~rl~~a 178 (225)
.|+.+|+|.+..+.. .+.. . . -++ +++|+.||+...+ +++ ..|.++ +.+.+++..+
T Consensus 109 ~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~rl~~a 188 (287)
T 1gvn_B 109 QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTN 188 (287)
T ss_dssp HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence 999999998876643 2211 1 1 134 4566677776643 344 245542 3456677777
Q ss_pred HHHHHhhCCCCcEEEECCCH--------HHHHHHHHHHHHhccC
Q psy10228 179 MKMEQEFGEFFTAVVQGDMP--------EDIYQKVKEVIQEQSG 214 (225)
Q Consensus 179 ~k~E~~~~~~fd~vI~Nddl--------eea~~~lk~iI~~~~~ 214 (225)
. .|+.....||++++||+. +.+...+..+|..+..
T Consensus 189 ~-~el~~~~~~d~v~v~d~~g~~ly~~~~~~~~~~~~ii~~e~~ 231 (287)
T 1gvn_B 189 L-ETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKELN 231 (287)
T ss_dssp H-HHHHHHTCCSCEEEECTTCCEEEETTTCTTSCHHHHHHHHHS
T ss_pred H-HHHHcCCCCCeEEEEeCCCCEeeccCCCCCcCHHHHHHHHHc
Confidence 4 366667899999999864 6777788888877654
No 22
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.96 E-value=7.1e-11 Score=106.55 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=54.3
Q ss_pred ccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHH-HHhhhCCcEEEEE
Q psy10228 51 EPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQM-EKDIQNHLFIEAG 103 (225)
Q Consensus 51 ~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef-~~~i~~~~FiE~~ 103 (225)
.+|+|+||+||||| ++||++|+..|.+|+.|||+ +..++ ......+.|
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhli-di~~~~~e~~s~~~F---- 115 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLL-GEVDPARGELTPADF---- 115 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESS-SCBCGGGCCCCHHHH----
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeec-cccCcccCccCHHHH----
Confidence 47999999999999 78999999999999999999 66555 333333333
Q ss_pred EeCCcceeecHHHHHHHHHcCCeEEEE
Q psy10228 104 QYNDNLYGTSVASVRDVAEKGKHCILD 130 (225)
Q Consensus 104 ~~~gn~YGTs~~sV~~v~~~gk~~ild 130 (225)
.-.-.+.|+++...|+.+|+.
T Consensus 116 ------~~~a~~~i~~i~~~g~~pIlv 136 (339)
T 3a8t_A 116 ------RSLAGKAVSEITGRRKLPVLV 136 (339)
T ss_dssp ------HHHHHHHHHHHHHTTCEEEEE
T ss_pred ------HHHHHHHHHHHHhcCCeEEEE
Confidence 334467788888899988875
No 23
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.91 E-value=4.4e-11 Score=110.29 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=62.1
Q ss_pred ccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE
Q psy10228 51 EPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ 104 (225)
Q Consensus 51 ~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~ 104 (225)
.+|+|+|||||||| ++||++|+++|.+|++|||+ +..+|...+..+.|++++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhli-d~~~~~~~~s~~~F~~~a- 80 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVM-NHVDWSEEYYSHRFETEC- 80 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESC-SCBCTTSCCCHHHHHHHH-
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcC-CccChHhHhhHHHHHHHH-
Confidence 47899999999998 78999999999999999999 788888888888887776
Q ss_pred eCCcceeecHHHHHHHHHcCCeEEEE
Q psy10228 105 YNDNLYGTSVASVRDVAEKGKHCILD 130 (225)
Q Consensus 105 ~~gn~YGTs~~sV~~v~~~gk~~ild 130 (225)
...|+++.++|+++||.
T Consensus 81 ---------~~~i~~i~~~g~~pilV 97 (409)
T 3eph_A 81 ---------MNAIEDIHRRGKIPIVV 97 (409)
T ss_dssp ---------HHHHHHHHTTTCEEEEE
T ss_pred ---------HHHHHHHHhcCCCEEEE
Confidence 78899999999998874
No 24
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.87 E-value=9.5e-11 Score=104.95 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=61.8
Q ss_pred ccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE
Q psy10228 51 EPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ 104 (225)
Q Consensus 51 ~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~ 104 (225)
.+|+|+|||||||| ++||++|+++|.+|++|||+ +..+|.+.+..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhli-d~~~~~e~~s~-------- 74 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLI-DIKDPSESFSV-------- 74 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESS-SCBCTTSCCCH--------
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEe-ccCChhhhccH--------
Confidence 47899999999999 88999999999999999999 77777765444
Q ss_pred eCCcceeecHHHHHHHHHcCCeEEEEccHHH
Q psy10228 105 YNDNLYGTSVASVRDVAEKGKHCILDVSGNA 135 (225)
Q Consensus 105 ~~gn~YGTs~~sV~~v~~~gk~~ildv~~~g 135 (225)
|.+++...+.|+++.++|+++||. .+.|
T Consensus 75 --~~F~~~a~~~i~~i~~~gk~pIlV-GGTg 102 (322)
T 3exa_A 75 --ADFQDLATPLITEIHERGRLPFLV-GGTG 102 (322)
T ss_dssp --HHHHHHHHHHHHHHHHTTCEEEEE-SCCH
T ss_pred --HHHHHHHHHHHHHHHhCCCcEEEE-cCcH
Confidence 456778899999999999998875 4444
No 25
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.81 E-value=1.4e-10 Score=103.65 Aligned_cols=70 Identities=11% Similarity=0.117 Sum_probs=59.8
Q ss_pred CccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEE
Q psy10228 50 QEPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAG 103 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~ 103 (225)
..+|+|+|||||||| ++||++|+++|.+|++|||+ +..+|.+....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhli-d~~~~~e~~s~------- 81 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLL-DIRDPSQAYSA------- 81 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETS-SCBCTTSCCCH-------
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEe-ccCCccccccH-------
Confidence 357899999999999 78999999999999999999 77777654333
Q ss_pred EeCCcceeecHHHHHHHHHcCCeEEEE
Q psy10228 104 QYNDNLYGTSVASVRDVAEKGKHCILD 130 (225)
Q Consensus 104 ~~~gn~YGTs~~sV~~v~~~gk~~ild 130 (225)
|+++......|+++.++|+.+||.
T Consensus 82 ---~~f~~~a~~~i~~i~~~g~~pilV 105 (316)
T 3foz_A 82 ---ADFRRDALAEMADITAAGRIPLLV 105 (316)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ---HHHHHHHHHHHHHHHhCCCcEEEE
Confidence 466788889999999999998865
No 26
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.65 E-value=8.7e-08 Score=74.83 Aligned_cols=154 Identities=10% Similarity=0.088 Sum_probs=86.4
Q ss_pred ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeC--C----ccee--ecHHHHHHHH-
Q psy10228 51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYN--D----NLYG--TSVASVRDVA- 121 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~--g----n~YG--Ts~~sV~~v~- 121 (225)
.+|+|+||+|||||+...+- +.-| |.++...+.+......+. ..+..+. . ..|| .....+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 74 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERG--AKVIVMSDVVRKRYSIEA-KPGERLMDFAKRLREIYGDGVVARLCVEELG 74 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTT--CEEEEHHHHHHHHHHHHC----CCHHHHHHHHHHHHCTTHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCC--CcEEEHhHHHHHHHHhcC-CChhHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 36899999999999443332 2234 334412344444332221 1111100 0 0022 1233345555
Q ss_pred -HcCCeEEEEc--cHHHHHHHHhhccCC-eEEEEecCCHHHHH-HHhccC------CHHHHHHHHHHHHHH-HHhhCCCC
Q psy10228 122 -EKGKHCILDV--SGNAIKRLQVASLYP-VAIFIKPKSVESIM-EMNKRM------TEEQAKKMYDRSMKM-EQEFGEFF 189 (225)
Q Consensus 122 -~~gk~~ildv--~~~gvk~L~~~~~~P-i~IFI~pps~~~L~-~L~~R~------seeei~~rl~~a~k~-E~~~~~~f 189 (225)
..++.+|+|- .+..+..|....-.| .+|||.+|. +.+. ++..|. +.+++.+++.+.... ...+....
T Consensus 75 ~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~-~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~a 153 (179)
T 3lw7_A 75 TSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPP-KIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAMA 153 (179)
T ss_dssp SCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCH-HHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHHHTC
T ss_pred hcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCH-HHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHHHhC
Confidence 6678888883 334444454332234 678888865 5554 477665 356777776543221 12344678
Q ss_pred cEEEECC-CHHHHHHHHHHHHHhc
Q psy10228 190 TAVVQGD-MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 190 d~vI~Nd-dleea~~~lk~iI~~~ 212 (225)
|++|.|+ ++++++++|..++...
T Consensus 154 d~vId~~~~~~~~~~~i~~~l~~~ 177 (179)
T 3lw7_A 154 DYIITNDSNYEEFKRRCEEVTDRV 177 (179)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHHH
Confidence 9999988 8999999999998753
No 27
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.62 E-value=5e-08 Score=80.44 Aligned_cols=98 Identities=19% Similarity=0.230 Sum_probs=60.7
Q ss_pred HHHHHHHHc---CCeEEEE---ccHHHHHHHHh----hccCC-eEEEEecCCHHHHHHHhcc------------------
Q psy10228 115 ASVRDVAEK---GKHCILD---VSGNAIKRLQV----ASLYP-VAIFIKPKSVESIMEMNKR------------------ 165 (225)
Q Consensus 115 ~sV~~v~~~---gk~~ild---v~~~gvk~L~~----~~~~P-i~IFI~pps~~~L~~L~~R------------------ 165 (225)
..+.+.+.. ++.+|+| .+...+..+.. .+..| .+||+.+|.-..++++..|
T Consensus 66 ~~~~~~l~~~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~ 145 (216)
T 3dl0_A 66 GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPK 145 (216)
T ss_dssp HHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCS
T ss_pred HHHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCc
Confidence 444555543 7889999 44444444432 23345 7888888764444557766
Q ss_pred ---------------C--CHHHHHHHHHHHHHHHHhhCCC-----CcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228 166 ---------------M--TEEQAKKMYDRSMKMEQEFGEF-----FTAVVQGD-MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 166 ---------------~--seeei~~rl~~a~k~E~~~~~~-----fd~vI~Nd-dleea~~~lk~iI~~~ 212 (225)
. +++.+++|+....+.-.....+ ..++|.|+ ++++++++|..+|...
T Consensus 146 ~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 215 (216)
T 3dl0_A 146 TPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGGL 215 (216)
T ss_dssp STTBCTTTCCBEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGGG
T ss_pred ccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 2 4788999998764322211111 23566655 7999999999998754
No 28
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.59 E-value=4.3e-08 Score=80.66 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=60.2
Q ss_pred HHHHHHHHc---CCeEEEE---ccHHHHHHHHh----hccCC-eEEEEecCCHHHHHHHhcc------------------
Q psy10228 115 ASVRDVAEK---GKHCILD---VSGNAIKRLQV----ASLYP-VAIFIKPKSVESIMEMNKR------------------ 165 (225)
Q Consensus 115 ~sV~~v~~~---gk~~ild---v~~~gvk~L~~----~~~~P-i~IFI~pps~~~L~~L~~R------------------ 165 (225)
..+.+.+.. ++.+|+| .+......+.. .+..| .+|||.+|.-..++++.+|
T Consensus 66 ~~~~~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~ 145 (216)
T 3fb4_A 66 GIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPA 145 (216)
T ss_dssp HHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCS
T ss_pred HHHHHHHhcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCC
Confidence 444555543 7788998 44444444432 22335 7888888754444457777
Q ss_pred -----------------CCHHHHHHHHHHHHHHHHh----hC-CCCcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228 166 -----------------MTEEQAKKMYDRSMKMEQE----FG-EFFTAVVQGD-MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 166 -----------------~seeei~~rl~~a~k~E~~----~~-~~fd~vI~Nd-dleea~~~lk~iI~~~ 212 (225)
.+++.+++|+....+.-.. |. .....+|.|+ ++++++++|..+|...
T Consensus 146 ~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 215 (216)
T 3fb4_A 146 VEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGGL 215 (216)
T ss_dssp STTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHTC
T ss_pred cccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence 1467889999876432211 21 1234566655 7999999999998753
No 29
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.49 E-value=1.3e-08 Score=87.29 Aligned_cols=103 Identities=8% Similarity=0.099 Sum_probs=66.3
Q ss_pred cEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEe
Q psy10228 52 PFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQY 105 (225)
Q Consensus 52 ~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~ 105 (225)
+|+|+||+||||| +++|++|++.|..|..|+|+ +..++.. +. +
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~-~~~~~~~----~~------~ 71 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYL-DSRPLTE----GI------L 71 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECS-CCCCGGG----CS------C
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEE-eeecccc----cc------c
Confidence 6899999999998 46789999999999999999 5433221 00 1
Q ss_pred C-CcceeecHHHHHHHHHcCCeEEEEccH-HHHHHHHhh-----ccCCeEEEEecCCHHHHHH-HhccC
Q psy10228 106 N-DNLYGTSVASVRDVAEKGKHCILDVSG-NAIKRLQVA-----SLYPVAIFIKPKSVESIME-MNKRM 166 (225)
Q Consensus 106 ~-gn~YGTs~~sV~~v~~~gk~~ildv~~-~gvk~L~~~-----~~~Pi~IFI~pps~~~L~~-L~~R~ 166 (225)
. +.+.-.....+ +++++|+.+|++... .-++.+... ++...+||+.+|..+.+.+ +.+|.
T Consensus 72 ~~~~f~~~~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~ 139 (253)
T 2ze6_A 72 DAESAHRRLIFEV-DWRKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV 139 (253)
T ss_dssp CHHHHHHHHHHHH-HTTTTSSEEEEEECCHHHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH-HHHhCCCCeEEeccHHHHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence 1 11222345666 666789988887543 222322211 1223789999998666654 66654
No 30
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.49 E-value=5.9e-08 Score=78.20 Aligned_cols=149 Identities=11% Similarity=0.126 Sum_probs=74.5
Q ss_pred cEEEEccCCCCCC----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE---eCCcceee
Q psy10228 52 PFMLCYTQDDPTT----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ---YNDNLYGT 112 (225)
Q Consensus 52 ~ivl~GpsgsGK~----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~---~~gn~YGT 112 (225)
+|+|.|++||||| -.+||.|...+. -+.+...+..+.+..+.. +..+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 71 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTET----------GEKIRKILLEEEVTPKAELFLFLASRNLL 71 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHH----------HHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcH----------HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5899999999999 234555432111 123333333233221111 22233444
Q ss_pred cHHHHHHHHHcCCeEEEE---------------ccHHHHHHHHhh---ccCC-eEEEEecCCHHHHHHHhccC--CHHHH
Q psy10228 113 SVASVRDVAEKGKHCILD---------------VSGNAIKRLQVA---SLYP-VAIFIKPKSVESIMEMNKRM--TEEQA 171 (225)
Q Consensus 113 s~~sV~~v~~~gk~~ild---------------v~~~gvk~L~~~---~~~P-i~IFI~pps~~~L~~L~~R~--seeei 171 (225)
... |...+.+|..+++| ++...+..+... ...| .+||+.+|--..++++.+|. +++++
T Consensus 72 ~~~-i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~ 150 (197)
T 2z0h_A 72 VTE-IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKREF 150 (197)
T ss_dssp HHH-HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CCCCCHHH
T ss_pred HHH-HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccCcccHHHH
Confidence 344 66667789999988 233333333221 2235 67888876433344455543 34456
Q ss_pred HHHHHHHH-HHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228 172 KKMYDRSM-KMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 172 ~~rl~~a~-k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~ 212 (225)
.+++.... ++...+ +....+|.|+ +++++.+++..+|...
T Consensus 151 ~~~~~~~~~~~~~~~-~~~~~~Id~~~~~e~~~~~i~~~l~~~ 192 (197)
T 2z0h_A 151 LERVREGYLVLAREH-PERIVVLDGKRSIEEIHRDVVREVKRR 192 (197)
T ss_dssp HHHHHHHHHHHHHHC-TTTEEEEETTSCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhC-CCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 55555442 222222 2223456655 7999999999988754
No 31
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.47 E-value=1.8e-07 Score=79.08 Aligned_cols=152 Identities=14% Similarity=0.110 Sum_probs=83.5
Q ss_pred CccEEEEccCCCCCC----------C-----cccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEE-EEEE---eCCcce
Q psy10228 50 QEPFMLCYTQDDPTT----------E-----DTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFI-EAGQ---YNDNLY 110 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~----------s-----~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~Fi-E~~~---~~gn~Y 110 (225)
+.+|+|.||+||||+ . .+||.|+..+ ..+.+.+.+.++..+ .+.. |..+.+
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~----------~g~~i~~~~~~~~~~~~~~~~ll~~a~r~ 95 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVP----------TGEEIRKIVLEGNDMDIRTEAMLFAASRR 95 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCH----------HHHHHHHHTTC---CCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCc----------hHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 468999999999998 2 3566664321 134566666666531 1110 112233
Q ss_pred eecHHHHHHHHHcCCeEEEE---------------ccHHHHHHHHh---hccCC-eEEEEecCCHHHHHHHhccC-----
Q psy10228 111 GTSVASVRDVAEKGKHCILD---------------VSGNAIKRLQV---ASLYP-VAIFIKPKSVESIMEMNKRM----- 166 (225)
Q Consensus 111 GTs~~sV~~v~~~gk~~ild---------------v~~~gvk~L~~---~~~~P-i~IFI~pps~~~L~~L~~R~----- 166 (225)
....+.|...+++|+.+|+| ++...+..|.. ....| .+||+..|--..++++.+|.
T Consensus 96 ~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr 175 (229)
T 4eaq_A 96 EHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNR 175 (229)
T ss_dssp HHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----C
T ss_pred HHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccc
Confidence 33333456778899999999 23333333432 22455 67888876433334476663
Q ss_pred -C--HHHHHHHHHHHHHHHHhhC-CCCcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228 167 -T--EEQAKKMYDRSMKMEQEFG-EFFTAVVQGD-MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 167 -s--eeei~~rl~~a~k~E~~~~-~~fd~vI~Nd-dleea~~~lk~iI~~~ 212 (225)
. ..++.+++..+.. +..-. +....+|.++ +++++.++|.++|...
T Consensus 176 ~e~~~~~~~~rv~~~y~-~l~~~~~~~~~vIDa~~s~eev~~~I~~~l~~~ 225 (229)
T 4eaq_A 176 LDQEDLKFHEKVIEGYQ-EIIHNESQRFKSVNADQPLENVVEDTYQTIIKY 225 (229)
T ss_dssp CCHHHHHHHHHHHHHHH-HHTTTCTTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHH-HHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 1 2344555555431 22111 1122445544 7999999999998754
No 32
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.47 E-value=3.3e-09 Score=88.21 Aligned_cols=155 Identities=18% Similarity=0.228 Sum_probs=84.6
Q ss_pred CccEEEEccCCCCCC-----------------CcccCC-CCCCCCCCcce-------EEecCHHHHHHhhh---------
Q psy10228 50 QEPFMLCYTQDDPTT-----------------EDTTRA-RREYEVDGRDY-------HFVSSREQMEKDIQ--------- 95 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~-----------------s~TTRp-~R~~E~dG~dY-------~FV~s~eef~~~i~--------- 95 (225)
...|+|+||+||||| ..++|. ++.++..|..+ .++ +.+.|...++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~ 83 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLV-PDEIVVNMVKERLRQPDAQ 83 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHSHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcC-CHHHHHHHHHHHHhhcccc
Confidence 357999999999999 123443 23333333321 145 5555555442
Q ss_pred CCcEEEEEEeCCcceeecHHHHHHHHHcC----CeEEEEccHHH-HHHHHhhccC-----CeEEEEecCCHHHHHH-Hhc
Q psy10228 96 NHLFIEAGQYNDNLYGTSVASVRDVAEKG----KHCILDVSGNA-IKRLQVASLY-----PVAIFIKPKSVESIME-MNK 164 (225)
Q Consensus 96 ~~~FiE~~~~~gn~YGTs~~sV~~v~~~g----k~~ildv~~~g-vk~L~~~~~~-----Pi~IFI~pps~~~L~~-L~~ 164 (225)
.+.+|-. | |..+.+.++...+.| .++.||+++.- ++++..+... .+.+|+.||+.+.+.+ |..
T Consensus 84 ~~~~vid----g--~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~ 157 (222)
T 1zak_A 84 ENGWLLD----G--YPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQ 157 (222)
T ss_dssp HTCEEEE----S--CCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBC
T ss_pred CCcEEEE----C--CCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCccccccccccc
Confidence 2333222 2 223334455444333 35567777754 3444433332 3567788888665543 555
Q ss_pred cC--CHHHHHHHHHHHHHHHHhhCCC---CcEEEECC-CHHHHHHHHHHHHHh
Q psy10228 165 RM--TEEQAKKMYDRSMKMEQEFGEF---FTAVVQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 165 R~--seeei~~rl~~a~k~E~~~~~~---fd~vI~Nd-dleea~~~lk~iI~~ 211 (225)
|. .++.+++|+..+.+.-...... ...+|.++ ++++++++|..+|..
T Consensus 158 r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id~~~~~~ev~~~I~~~l~~ 210 (222)
T 1zak_A 158 RFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGS 210 (222)
T ss_dssp CTTCCTTHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcEEEEECCCCHHHHHHHHHHHHHh
Confidence 54 3567888887764211111112 23455544 799999999998865
No 33
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.42 E-value=3.5e-07 Score=73.01 Aligned_cols=156 Identities=13% Similarity=0.125 Sum_probs=77.0
Q ss_pred ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHh-h-hCCcEEEEEEeCC------cceeecH-HHHHHHH
Q psy10228 51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKD-I-QNHLFIEAGQYND------NLYGTSV-ASVRDVA 121 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~-i-~~~~FiE~~~~~g------n~YGTs~-~sV~~v~ 121 (225)
..|+|+||+|||||+..-.-...-...|.+|.|+ +-.++... + ..|.+..+.++.. ..++... +.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~- 81 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV-SFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEM- 81 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEE-EHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHH-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEE-ehHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHHHHHHHhh-
Confidence 4799999999999922111110001246778898 65554322 2 2232222221111 0111111 113332
Q ss_pred HcCCeEEEEccHH-----HH------HHHHhhccCCeEEEEecCCHHHHH-HHhc--cC----CHHHHHHHHHHHHHHH-
Q psy10228 122 EKGKHCILDVSGN-----AI------KRLQVASLYPVAIFIKPKSVESIM-EMNK--RM----TEEQAKKMYDRSMKME- 182 (225)
Q Consensus 122 ~~gk~~ildv~~~-----gv------k~L~~~~~~Pi~IFI~pps~~~L~-~L~~--R~----seeei~~rl~~a~k~E- 182 (225)
..+..+|+|..+. +. ..++.. ....+|||.+|....++ ++.. |. +.+++..+........
T Consensus 82 ~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~~~~~~~~~~~~ 160 (192)
T 1kht_A 82 AKESPVAVDTHSTVSTPKGYLPGLPSWVLNEL-NPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAM 160 (192)
T ss_dssp HTTSCEEEECCSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEccceeccccccccccCcHHHHhcc-CCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHHHHHHHHHHHHH
Confidence 3466788875321 11 222221 12378999987644454 5765 54 2344433322221111
Q ss_pred --HhhCCCCcEEEECCC--HHHHHHHHHHHH
Q psy10228 183 --QEFGEFFTAVVQGDM--PEDIYQKVKEVI 209 (225)
Q Consensus 183 --~~~~~~fd~vI~Ndd--leea~~~lk~iI 209 (225)
..+.....++|.|.+ +++++++|.++|
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 161 SYGVLTGATVKIVQNRNGLLDQAVEELTNVL 191 (192)
T ss_dssp HHHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 123244456667877 999999998876
No 34
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.41 E-value=1.6e-07 Score=79.73 Aligned_cols=142 Identities=12% Similarity=0.116 Sum_probs=82.8
Q ss_pred ccEEEEccCCCCCC-----------------CcccCCC-CCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceee
Q psy10228 51 EPFMLCYTQDDPTT-----------------EDTTRAR-REYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGT 112 (225)
Q Consensus 51 ~~ivl~GpsgsGK~-----------------s~TTRp~-R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGT 112 (225)
..|+|+||+||||+ ..++|.. +.++. .-.++.+.+.+|.++.+. +
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~---------~g~~i~~~~~~g~~~~~~--------~ 92 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTE---------LGLKIKNIINEGKLVDDQ--------M 92 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSH---------HHHHHHHHHHTTCCCCHH--------H
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccch---------HHHHHHHHHhcCCCCcHH--------H
Confidence 46999999999999 2344432 11111 123556666777765432 2
Q ss_pred cHHHHHHHHHc---CCeEEEEccHHHHHHHHh-------hccCC-eEEEEecCCHHHHHHHhccC---------------
Q psy10228 113 SVASVRDVAEK---GKHCILDVSGNAIKRLQV-------ASLYP-VAIFIKPKSVESIMEMNKRM--------------- 166 (225)
Q Consensus 113 s~~sV~~v~~~---gk~~ildv~~~gvk~L~~-------~~~~P-i~IFI~pps~~~L~~L~~R~--------------- 166 (225)
-..-+...+.. ++.+|+|..+..+..... .+..| .+|++.+|.-..++++.+|.
T Consensus 93 ~~~~~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~p 172 (243)
T 3tlx_A 93 VLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNP 172 (243)
T ss_dssp HHHHHHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBC
T ss_pred HHHHHHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCC
Confidence 23334444443 778999976655433321 22445 67777776533344576552
Q ss_pred --------------------CHHHHHHHHHHHHHHHH-----hhCC-CCcEEEEC-CCHHHHHHHHHHHHH
Q psy10228 167 --------------------TEEQAKKMYDRSMKMEQ-----EFGE-FFTAVVQG-DMPEDIYQKVKEVIQ 210 (225)
Q Consensus 167 --------------------seeei~~rl~~a~k~E~-----~~~~-~fd~vI~N-ddleea~~~lk~iI~ 210 (225)
+++.+++|+..+.+ +. .|.. ..-.+|.+ .++++++++|..+|.
T Consensus 173 p~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~-~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 173 PKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKS-ETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH-HTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred CcccCccccccccccCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 46889999998753 21 1111 11233443 379999999999875
No 35
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.36 E-value=7e-06 Score=64.25 Aligned_cols=141 Identities=7% Similarity=0.010 Sum_probs=73.5
Q ss_pred cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEc
Q psy10228 52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDV 131 (225)
Q Consensus 52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv 131 (225)
.|+|+||+|||||+...+-.. . -.|.|+ +.+.|..... ++ ...-+....+..|..+|.|.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~---~--l~~~~i-~~d~~~~~~~---~~-----------~~~~~~~~~l~~~~~vi~dr 62 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK---E--LKYPII-KGSSFELAKS---GN-----------EKLFEHFNKLADEDNVIIDR 62 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH---H--HCCCEE-ECCCHHHHTT---CH-----------HHHHHHHHHHTTCCSEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHH---H--hCCeee-cCcccccchh---HH-----------HHHHHHHHHHHhCCCeEEee
Confidence 689999999999932221110 0 025666 4455544332 00 00001233456677777774
Q ss_pred cHHH------------------HHHHHhhccCC-eEEEEecCCHHHHHH-HhccCC---HHHHHHHHHHHH-HHHHhhCC
Q psy10228 132 SGNA------------------IKRLQVASLYP-VAIFIKPKSVESIME-MNKRMT---EEQAKKMYDRSM-KMEQEFGE 187 (225)
Q Consensus 132 ~~~g------------------vk~L~~~~~~P-i~IFI~pps~~~L~~-L~~R~s---eeei~~rl~~a~-k~E~~~~~ 187 (225)
...+ ...+......| .+||+.+| .+++.+ +..|.. +.+..+++..+. +....+ .
T Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~-~e~~~~R~~~r~r~~~~~~~~~~~~~~~~~~~~~~-~ 140 (173)
T 3kb2_A 63 FVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHAD-PSVIKKRLRVRGDEYIEGKDIDSILELYREVMSNA-G 140 (173)
T ss_dssp CHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECC-HHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHHTC-S
T ss_pred eecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCC-HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHhhc-C
Confidence 3221 11222111234 67888875 565554 665431 223333443332 112222 3
Q ss_pred CCcEEEECC--CHHHHHHHHHHHHHhccC
Q psy10228 188 FFTAVVQGD--MPEDIYQKVKEVIQEQSG 214 (225)
Q Consensus 188 ~fd~vI~Nd--dleea~~~lk~iI~~~~~ 214 (225)
..+.+|.++ +++++.++|...+....+
T Consensus 141 ~~~~~id~~~~~~~ev~~~I~~~~~~~~~ 169 (173)
T 3kb2_A 141 LHTYSWDTGQWSSDEIAKDIIFLVELEHH 169 (173)
T ss_dssp SCEEEEETTTSCHHHHHHHHHHHHHHGGG
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHhCCCc
Confidence 456677765 799999999999987543
No 36
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.34 E-value=3.6e-07 Score=73.45 Aligned_cols=102 Identities=13% Similarity=0.196 Sum_probs=58.4
Q ss_pred eeecHHHHHHHHHcCCeEEEEccHHHHHH---HHhhccCC-eEEEEecCCHHHHH-HHhccC--------CHHHHHHHHH
Q psy10228 110 YGTSVASVRDVAEKGKHCILDVSGNAIKR---LQVASLYP-VAIFIKPKSVESIM-EMNKRM--------TEEQAKKMYD 176 (225)
Q Consensus 110 YGTs~~sV~~v~~~gk~~ildv~~~gvk~---L~~~~~~P-i~IFI~pps~~~L~-~L~~R~--------seeei~~rl~ 176 (225)
+..-.+.|...+..|..+|+|..+.++.. +...-..| .+|||.+|. +.+. ++..|. +++.+.+|+.
T Consensus 74 ~~~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~-e~~~~R~~~R~~~~~~~~~~~~~~~~r~~ 152 (196)
T 2c95_A 74 LDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGP-ETMTQRLLKRGETSGRVDDNEETIKKRLE 152 (196)
T ss_dssp HHHHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCH-HHHHHHHHHHHTSSSCGGGSHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCH-HHHHHHHHccCCcCCCCCCCHHHHHHHHH
Confidence 33444555556667899999964433322 22111234 788888864 5444 465542 3567777776
Q ss_pred HHHHHHH----hhCC-CCcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228 177 RSMKMEQ----EFGE-FFTAVVQGD-MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 177 ~a~k~E~----~~~~-~fd~vI~Nd-dleea~~~lk~iI~~~ 212 (225)
...+... .|.. .+..+|.|+ ++++++++|..+|...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~ 194 (196)
T 2c95_A 153 TYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDAL 194 (196)
T ss_dssp HHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence 6532111 1221 122345554 7999999999998753
No 37
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.33 E-value=8.6e-07 Score=75.82 Aligned_cols=151 Identities=9% Similarity=0.093 Sum_probs=85.1
Q ss_pred CccEEEEccCCCCCC-----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhC----CcE---EEEEEe
Q psy10228 50 QEPFMLCYTQDDPTT-----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQN----HLF---IEAGQY 105 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~----~~F---iE~~~~ 105 (225)
..+|+|.|++||||+ ..+||.|+..+. -+.+...+.. ..+ .|+--|
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~----------g~~ir~~l~~~~~~~~~~~~~e~lLf 96 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLL----------AEKLRALVKEEHPGEELQDITELLLV 96 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHH----------HHHHHHHHHSCCTTSCCCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHH----------HHHHHHHHhhCCCcccCCHHHHHHHH
Confidence 468999999999998 357888843211 2455555531 112 111123
Q ss_pred CCcceeecHHHHHHHHHcCCeEEEEc---------------cHHHHHHHHh---hccCC-eEEEEecCCHHHHHH-Hhcc
Q psy10228 106 NDNLYGTSVASVRDVAEKGKHCILDV---------------SGNAIKRLQV---ASLYP-VAIFIKPKSVESIME-MNKR 165 (225)
Q Consensus 106 ~gn~YGTs~~sV~~v~~~gk~~ildv---------------~~~gvk~L~~---~~~~P-i~IFI~pps~~~L~~-L~~R 165 (225)
..+.|..-.+.|+..+++|+++|.|= +.+-+..|.. ....| .+||+..|- +.+.+ +.+|
T Consensus 97 ~A~R~~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~-e~~~~Ri~~R 175 (236)
T 3lv8_A 97 YAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDP-KLGLERARGR 175 (236)
T ss_dssp HHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCH-HHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCH-HHHHHHHHhc
Confidence 34455555566777889999999992 1122233332 12456 788998864 55544 7666
Q ss_pred CC----H---HHHHHHHHHHH-HHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhcc
Q psy10228 166 MT----E---EQAKKMYDRSM-KMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 166 ~s----e---eei~~rl~~a~-k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~~ 213 (225)
.. + .+..+++..+. ++...+ +. ..+|.++ ++++..++|.++|...-
T Consensus 176 ~~~dr~E~~~~~~~~rv~~~y~~la~~~-~~-~~vIDa~~sieeV~~~I~~~l~~~l 230 (236)
T 3lv8_A 176 GELDRIEKMDISFFERARERYLELANSD-DS-VVMIDAAQSIEQVTADIRRALQDWL 230 (236)
T ss_dssp -CCCTTTTSCHHHHHHHHHHHHHHHHHC-TT-EEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHHC-CC-EEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 41 1 34555555543 221122 22 4555544 79999999999987643
No 38
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.31 E-value=6e-07 Score=76.40 Aligned_cols=151 Identities=11% Similarity=0.063 Sum_probs=86.8
Q ss_pred CccEEEEccCCCCCC------------C--------cccCCCCCCCCCCcceEEecCHHHHHHhhhCCcE---EEEEEeC
Q psy10228 50 QEPFMLCYTQDDPTT------------E--------DTTRARREYEVDGRDYHFVSSREQMEKDIQNHLF---IEAGQYN 106 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~------------s--------~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~F---iE~~~~~ 106 (225)
+.+|+|.||+||||+ . .+||.|+..+. | +.+.+.+.++.+ .|+-.|.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~-g---------~~ir~~l~~~~~~~~~~~llf~ 94 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRL-G---------ETLREILLNQPMDLETEALLMF 94 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHH-H---------HHHHHHHHHSCCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChH-H---------HHHHHHHHcCCCCHHHHHHHHH
Confidence 568999999999998 2 47888854321 2 345555555532 1222255
Q ss_pred CcceeecHHHHHHHHHcCCeEEEEcc---------------HHHHHHHHhh---ccCC-eEEEEecCCHHHHHHHhccCC
Q psy10228 107 DNLYGTSVASVRDVAEKGKHCILDVS---------------GNAIKRLQVA---SLYP-VAIFIKPKSVESIMEMNKRMT 167 (225)
Q Consensus 107 gn~YGTs~~sV~~v~~~gk~~ildv~---------------~~gvk~L~~~---~~~P-i~IFI~pps~~~L~~L~~R~s 167 (225)
.+.|..-.+.|+..+++|+++|+|=- .+-+..|... ...| .+||+..|--..++++.+|..
T Consensus 95 a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~ 174 (227)
T 3v9p_A 95 AGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRM 174 (227)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccC
Confidence 66777766778888999999999831 2223333321 2456 789998764333444666641
Q ss_pred -------HHHHHHHHHHHH-HHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228 168 -------EEQAKKMYDRSM-KMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 168 -------eeei~~rl~~a~-k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~ 211 (225)
..+..+++..+. ++-..+ +.-..+|..+ ++++..++|.++|..
T Consensus 175 ~dr~E~~~~ef~~rv~~~Y~~la~~~-~~~~~vIDa~~s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 175 PDKFESESDAFFARTRAEYLRRAQEA-PHRFVIVDSSEPIAQIRKQLEGVLAA 226 (227)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHHC-TTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 123444444432 111122 2234555544 799999999998875
No 39
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.26 E-value=1.1e-06 Score=69.73 Aligned_cols=96 Identities=10% Similarity=-0.004 Sum_probs=55.0
Q ss_pred cceeecHHHHHHHHHcCCeEEEEccH-HH---HHHHHh-hccCC-eEEEEecCCHHHHHH-HhccCCH-HHHHHHHHHHH
Q psy10228 108 NLYGTSVASVRDVAEKGKHCILDVSG-NA---IKRLQV-ASLYP-VAIFIKPKSVESIME-MNKRMTE-EQAKKMYDRSM 179 (225)
Q Consensus 108 n~YGTs~~sV~~v~~~gk~~ildv~~-~g---vk~L~~-~~~~P-i~IFI~pps~~~L~~-L~~R~se-eei~~rl~~a~ 179 (225)
..|+.....+...++.|..+|++... ++ ...+.. ..-.+ +.||+.+ +.+++.+ +..|... ... ..+
T Consensus 70 ~~~~~~~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~-~~e~l~~R~~~r~~~~~~~----~~~- 143 (178)
T 1qhx_A 70 ALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRC-DGAVAEGRETARGDRVAGM----AAK- 143 (178)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEEC-CHHHHHHHHHHTSSSCTTH----HHH-
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEEC-CHHHHHHHHHhhCCcccch----hhh-
Confidence 34555556677888889999998743 11 111211 12235 5677876 4777765 7777631 111 111
Q ss_pred HHHHhhC-CCCcEEEECC--CHHHHHHHHHHHH
Q psy10228 180 KMEQEFG-EFFTAVVQGD--MPEDIYQKVKEVI 209 (225)
Q Consensus 180 k~E~~~~-~~fd~vI~Nd--dleea~~~lk~iI 209 (225)
..+..+. ..+|++|.++ ++++++++|.+.+
T Consensus 144 ~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 144 QAYVVHEGVEYDVEVDTTHKESIECAWAIAAHV 176 (178)
T ss_dssp HTTGGGTTCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred hchhhccCCCCcEEEECCCCCHHHHHHHHHHHh
Confidence 1122221 3489999865 6889888887654
No 40
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.24 E-value=1.5e-08 Score=90.74 Aligned_cols=69 Identities=9% Similarity=0.054 Sum_probs=51.4
Q ss_pred ccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE
Q psy10228 51 EPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ 104 (225)
Q Consensus 51 ~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~ 104 (225)
..|+|+||+||||| ++||++|+++|.+|+.|||+ +..++......+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~li-d~~~~~~~~~~~~------ 78 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLI-DIRDPAESYSAAE------ 78 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETS-SCBCTTSCCCHHH------
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEe-eccCcccccCHHH------
Confidence 47999999999999 67999999999999999999 5544433222222
Q ss_pred eCCcceeecHHHHHHHHHcCCeEEEE
Q psy10228 105 YNDNLYGTSVASVRDVAEKGKHCILD 130 (225)
Q Consensus 105 ~~gn~YGTs~~sV~~v~~~gk~~ild 130 (225)
+.-.....|++++++|+.+|+.
T Consensus 79 ----F~~~a~~~i~~i~~~g~~~Ilv 100 (323)
T 3crm_A 79 ----FRADALAAMAKATARGRIPLLV 100 (323)
T ss_dssp ----HHHHHHHHHHHHHHTTCEEEEE
T ss_pred ----HHHHHHHHHHHHHHcCCeEEEE
Confidence 2233467788888888877764
No 41
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.22 E-value=5.9e-07 Score=73.25 Aligned_cols=96 Identities=9% Similarity=0.127 Sum_probs=51.2
Q ss_pred HHHHHHHHcCCeEEEEcc---------------HHHHHHHHhhccCC-eEEEEecCCHHHHHH-Hhcc---CCHHHHHHH
Q psy10228 115 ASVRDVAEKGKHCILDVS---------------GNAIKRLQVASLYP-VAIFIKPKSVESIME-MNKR---MTEEQAKKM 174 (225)
Q Consensus 115 ~sV~~v~~~gk~~ildv~---------------~~gvk~L~~~~~~P-i~IFI~pps~~~L~~-L~~R---~seeei~~r 174 (225)
+.+...+.+|..+|+|-. ...+..+......| .+||+.+| .+++.+ +.+| ....++.++
T Consensus 84 ~~i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~-~e~~~~Rl~r~~~~~~~~~~~~~ 162 (215)
T 1nn5_A 84 PLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQ-LADAAKRGAFGHERYENGAFQER 162 (215)
T ss_dssp HHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECC-HHHHHHC-----CTTCSHHHHHH
T ss_pred HHHHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHhccCccccchHHHHHH
Confidence 457777788999999832 22222222111234 78888876 455544 5433 222345555
Q ss_pred HHHHHHHHHhhCCCCc-EEEECC-CHHHHHHHHHHHHHhc
Q psy10228 175 YDRSMKMEQEFGEFFT-AVVQGD-MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 175 l~~a~k~E~~~~~~fd-~vI~Nd-dleea~~~lk~iI~~~ 212 (225)
+..... +.......+ .+|.|+ ++++++++|..+|...
T Consensus 163 ~~~~~~-~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~ 201 (215)
T 1nn5_A 163 ALRCFH-QLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDA 201 (215)
T ss_dssp HHHHHH-HHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 554421 111111234 556554 7999999998888653
No 42
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.21 E-value=3.2e-07 Score=74.35 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=53.3
Q ss_pred HHHHHHHHcCCeEEEEcc--------------HHHHHHHHhhccCC-eEEEEecCCHHHHHHHhccCC--H--HHHHHHH
Q psy10228 115 ASVRDVAEKGKHCILDVS--------------GNAIKRLQVASLYP-VAIFIKPKSVESIMEMNKRMT--E--EQAKKMY 175 (225)
Q Consensus 115 ~sV~~v~~~gk~~ildv~--------------~~gvk~L~~~~~~P-i~IFI~pps~~~L~~L~~R~s--e--eei~~rl 175 (225)
+.|...+.+|..+|+|-. ...+..+......| .+||+.+| .+.+.+ +|.. . .++.+++
T Consensus 77 ~~i~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~--~R~~d~~e~~~~~~rl 153 (204)
T 2v54_A 77 SFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESG-SKEINR--NVGEEIYEDVTFQQKV 153 (204)
T ss_dssp HHHHHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCC-HHHHTT--CCSSSTTCCSHHHHHH
T ss_pred HHHHHHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCC-HHHHHh--hcCcccccHHHHHHHH
Confidence 456777788999998832 22233333222244 67888876 455544 4532 1 2666677
Q ss_pred HHHHHHHHhhCCCCc-EEEECC-CHHHHHHHHHHHHHh
Q psy10228 176 DRSMKMEQEFGEFFT-AVVQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 176 ~~a~k~E~~~~~~fd-~vI~Nd-dleea~~~lk~iI~~ 211 (225)
..+.. +.......+ .+|.|+ ++++++++|.++|..
T Consensus 154 ~~~y~-~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l~~ 190 (204)
T 2v54_A 154 LQEYK-KMIEEGDIHWQIISSEFEEDVKKELIKNIVIE 190 (204)
T ss_dssp HHHHH-HHHTTCSSCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhCCCcEEEEECCCCHHHHHHHHHHHHHH
Confidence 65432 221112234 445444 799999999888865
No 43
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.13 E-value=1.3e-06 Score=69.92 Aligned_cols=151 Identities=8% Similarity=0.091 Sum_probs=77.9
Q ss_pred ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCC-cceeecHHH-HHHHHHcCCeEE
Q psy10228 51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYND-NLYGTSVAS-VRDVAEKGKHCI 128 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~g-n~YGTs~~s-V~~v~~~gk~~i 128 (225)
..|+|+||+|||||+..-+-.+ . -.|.|+ +.+++..........++....| .+|...... +..+.. ...++
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~---~--l~~~~i-~~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~v 78 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK---L--TKRILY-DSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCK-LDNII 78 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH---H--HCCCEE-EHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-SSSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHH---H--hCCCEE-EChHHHHHHcCCChhhHHHHhCHHHHHHHHHHHHHHHHh-cCCcE
Confidence 4799999999999922111100 0 035677 6676655443322221111111 334333323 333333 34455
Q ss_pred EEcc------HHHHHHHHhhccCCeEEEEecCCHHHHHH-H--hc---cC--CHHHHHHHHHHHH-HHHHhhCCCCcEEE
Q psy10228 129 LDVS------GNAIKRLQVASLYPVAIFIKPKSVESIME-M--NK---RM--TEEQAKKMYDRSM-KMEQEFGEFFTAVV 193 (225)
Q Consensus 129 ldv~------~~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L--~~---R~--seeei~~rl~~a~-k~E~~~~~~fd~vI 193 (225)
+.+. ......|+.. ..+||+.+| .+++.+ + +. |. ++++..+++.... +-+..|...+|++|
T Consensus 79 i~~gg~~~~~~~~~~~l~~~---~~vi~L~~~-~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~~~ad~~I 154 (185)
T 3trf_A 79 LATGGGVVLDEKNRQQISET---GVVIYLTAS-IDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQAMADLVY 154 (185)
T ss_dssp EECCTTGGGSHHHHHHHHHH---EEEEEEECC-HHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EecCCceecCHHHHHHHHhC---CcEEEEECC-HHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCEEE
Confidence 5542 2223333322 378999986 566654 7 33 32 2233333333321 11223444589999
Q ss_pred ECC--CHHHHHHHHHHHHHhc
Q psy10228 194 QGD--MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 194 ~Nd--dleea~~~lk~iI~~~ 212 (225)
.|+ ++++++++|..+|...
T Consensus 155 dt~~~~~~e~~~~I~~~l~~~ 175 (185)
T 3trf_A 155 PTDDLNPRQLATQILVDIKQT 175 (185)
T ss_dssp ECTTCCHHHHHHHHHHHSCC-
T ss_pred ECCCCCHHHHHHHHHHHHHHH
Confidence 987 4899999999887643
No 44
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.11 E-value=4.3e-07 Score=81.84 Aligned_cols=73 Identities=12% Similarity=0.136 Sum_probs=53.3
Q ss_pred ccEEEEccCCCCCC--------------------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEE
Q psy10228 51 EPFMLCYTQDDPTT--------------------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQ 104 (225)
Q Consensus 51 ~~ivl~GpsgsGK~--------------------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~ 104 (225)
.+|+|+|||||||| +++|++|+..|.+|..|||+ +..++...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~-di~~~~~~~~~-------- 78 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMI-DILPPDASFSA-------- 78 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESS-SCBCTTSCCCH--------
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHH-HHhCCccccCH--------
Confidence 47999999999999 57999999999999999998 53333221111
Q ss_pred eCCcceeecHHHHHHHHHcCCeEEEEccHHH
Q psy10228 105 YNDNLYGTSVASVRDVAEKGKHCILDVSGNA 135 (225)
Q Consensus 105 ~~gn~YGTs~~sV~~v~~~gk~~ildv~~~g 135 (225)
+++.-.....+.++...|+.+|+ +.+.+
T Consensus 79 --~dF~~~a~~~i~~i~~~g~~~Il-vGGt~ 106 (340)
T 3d3q_A 79 --YEFKKRAEKYIKDITRRGKVPII-AGGTG 106 (340)
T ss_dssp --HHHHHHHHHHHHHHHHTTCEEEE-ECCCH
T ss_pred --HHHHHHHHHHHHHHHhCCCcEEE-ECChh
Confidence 23344567778888888988776 45555
No 45
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.10 E-value=4.7e-06 Score=69.89 Aligned_cols=151 Identities=9% Similarity=0.017 Sum_probs=83.7
Q ss_pred CccEEEEccCCCCCC----------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcE---EEEE---EeCC
Q psy10228 50 QEPFMLCYTQDDPTT----------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLF---IEAG---QYND 107 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~F---iE~~---~~~g 107 (225)
+.+|+|.|++||||+ ..+||.|+..+. -+.+.+.+.++.. -.+. -|..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~----------g~~i~~~l~~~~~~~~~~~~~~llf~a 75 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPL----------AERIRELLLAPSDEPMAADTELLLMFA 75 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHH----------HHHHHHHHHSCCSSCCCHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHH----------HHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 568999999999998 457888743211 2345555554421 0011 1222
Q ss_pred cceeecHHHHHHHHHcCCeEEEEcc---------------HHHHHHHHhh---ccCC-eEEEEecCCHHHHHHHhccCC-
Q psy10228 108 NLYGTSVASVRDVAEKGKHCILDVS---------------GNAIKRLQVA---SLYP-VAIFIKPKSVESIMEMNKRMT- 167 (225)
Q Consensus 108 n~YGTs~~sV~~v~~~gk~~ildv~---------------~~gvk~L~~~---~~~P-i~IFI~pps~~~L~~L~~R~s- 167 (225)
+.|..-.+.|+..+++|+++|.|=- .+-+..|... ...| .+||+..|--..++++.+|..
T Consensus 76 ~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~ 155 (213)
T 4edh_A 76 ARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRL 155 (213)
T ss_dssp HHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSC
T ss_pred HHHHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence 3333333446667789999999831 1222333321 2456 789998864333445777641
Q ss_pred ---H---HHHHHHHHHHH-HHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228 168 ---E---EQAKKMYDRSM-KMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 168 ---e---eei~~rl~~a~-k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~ 211 (225)
+ .+..+++..+. ++...+ +.-..+|.++ ++++..++|.++|..
T Consensus 156 dr~E~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~~s~eeV~~~I~~~l~~ 206 (213)
T 4edh_A 156 DRFEQEDRRFFEAVRQTYLQRAAQA-PERYQVLDAGLPLAEVQAGLDRLLPN 206 (213)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHC-TTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHHHHC-CCcEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2 24444544432 111122 2234556544 799999998888864
No 46
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.09 E-value=2.7e-06 Score=69.25 Aligned_cols=94 Identities=14% Similarity=0.155 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCeEEEEcc---HHHHHHHHhhccCC-eEEEEecCCHHHHHH-HhccC---CH-HHHHHHHHHHHHHHHh
Q psy10228 114 VASVRDVAEKGKHCILDVS---GNAIKRLQVASLYP-VAIFIKPKSVESIME-MNKRM---TE-EQAKKMYDRSMKMEQE 184 (225)
Q Consensus 114 ~~sV~~v~~~gk~~ildv~---~~gvk~L~~~~~~P-i~IFI~pps~~~L~~-L~~R~---se-eei~~rl~~a~k~E~~ 184 (225)
...+.+.+..|..+|+|.. ......+....-.| .+||+.+| .+.+.+ +..|. .+ +.++..+... +.-
T Consensus 76 ~~~l~~~~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~R~~~~~~~~~~~~~~~~~---~~~ 151 (202)
T 3t61_A 76 LAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGS-ESVLAERMHHRTGHFMPSSLLQTQLETL---EDP 151 (202)
T ss_dssp HHHHHHHHTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECC-HHHHHHHHHHHHSSCCCHHHHHHHHHHC---CCC
T ss_pred HHHHHHHHhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCC-HHHHHHHHHHhhccCCCHHHHHHHHHhc---CCC
Confidence 4556677778999999854 44444454322223 67888876 555554 66653 22 2222222211 111
Q ss_pred hCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228 185 FGEFFTAVVQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 185 ~~~~fd~vI~Nd-dleea~~~lk~iI~~ 211 (225)
+....+.+|.|+ ++++++++|..+|..
T Consensus 152 ~~~~~~~~Id~~~~~~e~~~~I~~~l~~ 179 (202)
T 3t61_A 152 RGEVRTVAVDVAQPLAEIVREALAGLAR 179 (202)
T ss_dssp TTSTTEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 223456777765 799999999998874
No 47
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=5.9e-06 Score=67.41 Aligned_cols=152 Identities=7% Similarity=0.043 Sum_probs=77.8
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCC-cceeecHHHHHHHHHcCCeEE
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYND-NLYGTSVASVRDVAEKGKHCI 128 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~g-n~YGTs~~sV~~v~~~gk~~i 128 (225)
...|+|+||+|||||+..-.-.+ .- .|.|+ +-+++.........-+...-.| ..|......+-..+..+..+|
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~---~l--~~~~i-~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~v 98 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR---KL--NVPFI-DLDWYIEERFHKTVGELFTERGEAGFRELERNMLHEVAEFENVV 98 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH---HH--TCCEE-EHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH---Hc--CCCEE-cchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcE
Confidence 45899999999999922111000 00 34566 5555443322111111000001 112222222222233456677
Q ss_pred EEccH------HHHHHHHhhccCCeEEEEecCCHHHHH-HHh-cc---C-----CHHHHHHHHHHHHH-HHHhhCCCCcE
Q psy10228 129 LDVSG------NAIKRLQVASLYPVAIFIKPKSVESIM-EMN-KR---M-----TEEQAKKMYDRSMK-MEQEFGEFFTA 191 (225)
Q Consensus 129 ldv~~------~gvk~L~~~~~~Pi~IFI~pps~~~L~-~L~-~R---~-----seeei~~rl~~a~k-~E~~~~~~fd~ 191 (225)
++..+ ...+.+.. ...+||+.+|- +.+. ++. .| . +.+++.+++....+ .+..|.. +|+
T Consensus 99 i~~ggg~~~~~~~~~~l~~---~~~vi~L~~~~-e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~-ad~ 173 (199)
T 3vaa_A 99 ISTGGGAPCFYDNMEFMNR---TGKTVFLNVHP-DVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAPFYTQ-AQY 173 (199)
T ss_dssp EECCTTGGGSTTHHHHHHH---HSEEEEEECCH-HHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHHHTT-SSE
T ss_pred EECCCcEEccHHHHHHHHc---CCEEEEEECCH-HHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHhh-CCE
Confidence 77543 22223321 34789999864 5555 465 22 1 34455555554432 1234545 899
Q ss_pred EEECC--CHHHHHHHHHHHHHhc
Q psy10228 192 VVQGD--MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 192 vI~Nd--dleea~~~lk~iI~~~ 212 (225)
+|.++ ++++++++|.+.|...
T Consensus 174 ~Idt~~~s~ee~~~~I~~~l~~~ 196 (199)
T 3vaa_A 174 IFNADELEDRWQIESSVQRLQEL 196 (199)
T ss_dssp EEECCCCSSHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHH
Confidence 99887 5899999999988764
No 48
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.05 E-value=6e-07 Score=73.16 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=55.2
Q ss_pred HHHHHHHcCCeEEEEccHHH---H---------HHHHh--hc-cCC-eEEEEecCCHHHHHHHhcc---CCHHHHHHHHH
Q psy10228 116 SVRDVAEKGKHCILDVSGNA---I---------KRLQV--AS-LYP-VAIFIKPKSVESIMEMNKR---MTEEQAKKMYD 176 (225)
Q Consensus 116 sV~~v~~~gk~~ildv~~~g---v---------k~L~~--~~-~~P-i~IFI~pps~~~L~~L~~R---~seeei~~rl~ 176 (225)
.+...+.+|..+|+|-.+.+ . ..+.. .. ..| .+|||.+|.-..++++.+| ...+++.+++.
T Consensus 86 ~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r~~~~~~~~~~~ 165 (212)
T 2wwf_A 86 EIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQKKIY 165 (212)
T ss_dssp HHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSSTTCSHHHHHHHH
T ss_pred HHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcccccHHHHHHHHH
Confidence 46677788999999854421 1 11110 11 234 6889887653333345433 33355666664
Q ss_pred HHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228 177 RSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 177 ~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~ 212 (225)
.+.. +. .....+.+|.|+ ++++++++|.+++...
T Consensus 166 ~~~~-~~-~~~~~~~~Id~~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 166 ETYK-HF-AHEDYWINIDATRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp HHGG-GG-TTCTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred HHHH-HH-hccCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 4321 11 113456777776 7999999999999765
No 49
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.03 E-value=1.4e-05 Score=64.21 Aligned_cols=95 Identities=7% Similarity=0.053 Sum_probs=52.3
Q ss_pred HHHHHHcCCeEEEEcc---HHHHHHHHhh-ccCCeEEEEecCCHHHHHHHhccCC--------HHHHHHHHHHHHHHHH-
Q psy10228 117 VRDVAEKGKHCILDVS---GNAIKRLQVA-SLYPVAIFIKPKSVESIMEMNKRMT--------EEQAKKMYDRSMKMEQ- 183 (225)
Q Consensus 117 V~~v~~~gk~~ildv~---~~gvk~L~~~-~~~Pi~IFI~pps~~~L~~L~~R~s--------eeei~~rl~~a~k~E~- 183 (225)
|...+..|..+|+|-- ......+... .....+|||.+|.-..++++..|.. .+++.+|+........
T Consensus 84 i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~ 163 (199)
T 2bwj_A 84 MVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIP 163 (199)
T ss_dssp HHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3334446888999832 2223333321 1123789999864333444666642 2566667655432111
Q ss_pred ---hhCCCCc-EEEECC-CHHHHHHHHHHHHHh
Q psy10228 184 ---EFGEFFT-AVVQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 184 ---~~~~~fd-~vI~Nd-dleea~~~lk~iI~~ 211 (225)
.|...-+ ++|.|+ ++++++++|..+|..
T Consensus 164 ~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~ 196 (199)
T 2bwj_A 164 VIAYYETKTQLHKINAEGTPEDVFLQLCTAIDS 196 (199)
T ss_dssp HHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 1221123 455554 799999999998875
No 50
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.01 E-value=1.4e-05 Score=63.45 Aligned_cols=95 Identities=13% Similarity=0.218 Sum_probs=53.1
Q ss_pred HHHHHHH--cCCeEEEEccH---HHHHHHHh---hccCC-eEEEEecCCHHHHHHHhccC--------CHHHHHHHHHHH
Q psy10228 116 SVRDVAE--KGKHCILDVSG---NAIKRLQV---ASLYP-VAIFIKPKSVESIMEMNKRM--------TEEQAKKMYDRS 178 (225)
Q Consensus 116 sV~~v~~--~gk~~ildv~~---~gvk~L~~---~~~~P-i~IFI~pps~~~L~~L~~R~--------seeei~~rl~~a 178 (225)
.+.+.+. .|..+|+|-.+ .....+.. ....| .+|||.+|.-..++++..|. +.+++.+|+...
T Consensus 73 ~l~~~i~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~ 152 (194)
T 1qf9_A 73 LLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTF 152 (194)
T ss_dssp HHHHHHHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHH
Confidence 3444443 47788888432 22222321 11234 67888876433344465442 257788887764
Q ss_pred HHH----HHhhCCCCc--EEEECC-CHHHHHHHHHHHHHh
Q psy10228 179 MKM----EQEFGEFFT--AVVQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 179 ~k~----E~~~~~~fd--~vI~Nd-dleea~~~lk~iI~~ 211 (225)
.+. ...+ ...| .+|.|+ ++++++++|..++..
T Consensus 153 ~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 153 NVQTKLVIDHY-NKFDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHTHHHHHHHH-HHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHH-HhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 311 1112 1245 566665 799999999999875
No 51
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.99 E-value=2e-06 Score=67.91 Aligned_cols=148 Identities=8% Similarity=0.039 Sum_probs=71.7
Q ss_pred ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEE-EEeC----CcceeecHHHHHHHH---H
Q psy10228 51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEA-GQYN----DNLYGTSVASVRDVA---E 122 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~-~~~~----gn~YGTs~~sV~~v~---~ 122 (225)
..|+|+|++|||||+...+-.+. ...+.++ +.+.+...+..... .+ ..|. ...+.+....+...+ .
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i-~~d~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK----NPGFYNI-NRDDYRQSIMAHEE-RDEYKYTKKKEGIVTGMQFDTAKSILYGGD 76 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH----STTEEEE-CHHHHHHHHTTSCC-GGGCCCCHHHHHHHHHHHHHHHHHHHTSCS
T ss_pred eEEEEecCCCCCHHHHHHHHHhh----cCCcEEe-cHHHHHHHhhCCCc-cchhhhchhhhhHHHHHHHHHHHHHHhhcc
Confidence 36899999999999332221110 1236788 77777766543210 00 0011 123444556677788 7
Q ss_pred cCCeEEEEccHHH---HHHHHh---hccCC-eEEEEecCCHHHHH-HHhccC----CHHHHHHHHHHHHHHHHhhCCCCc
Q psy10228 123 KGKHCILDVSGNA---IKRLQV---ASLYP-VAIFIKPKSVESIM-EMNKRM----TEEQAKKMYDRSMKMEQEFGEFFT 190 (225)
Q Consensus 123 ~gk~~ildv~~~g---vk~L~~---~~~~P-i~IFI~pps~~~L~-~L~~R~----seeei~~rl~~a~k~E~~~~~~fd 190 (225)
.|+.+|+|..... ...+.. ..-+| .+|||.+| .+.+. ++..|. +++.++++++...+ .. .++
T Consensus 77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~i~~~~~~~~~-~~----~~~ 150 (181)
T 1ly1_A 77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVKRNSKRGTKAVPIDVLRSMYKSMRE-YL----GLP 150 (181)
T ss_dssp SCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCC-HHHHHHHHTTCGGGCCCHHHHHHHHHHHHH-HH----TCC
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHhccccCCCCHHHHHHHHHHhhc-cC----CCC
Confidence 8999999864321 222221 11134 68899875 45554 477665 46778888877643 21 123
Q ss_pred -EEEECCCH-HHHHHHHHHHHHh
Q psy10228 191 -AVVQGDMP-EDIYQKVKEVIQE 211 (225)
Q Consensus 191 -~vI~Nddl-eea~~~lk~iI~~ 211 (225)
++ +|.+. ++.+..|...+..
T Consensus 151 ~~~-id~~~~~~v~~~i~~~l~~ 172 (181)
T 1ly1_A 151 VYN-GTPGKPKAVIFDVDGTLAK 172 (181)
T ss_dssp CC---------------------
T ss_pred ccc-cCCCCCceeeehhhhhhhc
Confidence 33 55555 6666666666554
No 52
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.95 E-value=4.9e-06 Score=66.21 Aligned_cols=154 Identities=8% Similarity=0.026 Sum_probs=73.3
Q ss_pred cEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHH-HHHhh-hCCcEEEEEEeCC---cceee----cHHHHHHHH-
Q psy10228 52 PFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQ-MEKDI-QNHLFIEAGQYND---NLYGT----SVASVRDVA- 121 (225)
Q Consensus 52 ~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~ee-f~~~i-~~~~FiE~~~~~g---n~YGT----s~~sV~~v~- 121 (225)
.|+|+|++|||||+...+-...-...|..+.++ +..+ +.+.+ ..+.+..+..+.. ..+.. ....|...+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 81 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII-NYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR 81 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE-EHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE-ECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHHHhh
Confidence 689999999999932222111111235667777 5433 33333 2222100000000 00000 011134444
Q ss_pred -HcCCeEEEEcc----HH-H------HHHHHhhccCC-eEEEEecCCHHHHHH-Hhc--cCC-----HHHHH--HHHHHH
Q psy10228 122 -EKGKHCILDVS----GN-A------IKRLQVASLYP-VAIFIKPKSVESIME-MNK--RMT-----EEQAK--KMYDRS 178 (225)
Q Consensus 122 -~~gk~~ildv~----~~-g------vk~L~~~~~~P-i~IFI~pps~~~L~~-L~~--R~s-----eeei~--~rl~~a 178 (225)
..|+.+|+|-. .+ | ...++. +.| .+||+.+|....+++ +.. |.. .+.+. +++..+
T Consensus 82 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~~~~~~~~~~~ 159 (194)
T 1nks_A 82 AGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE--INPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARY 159 (194)
T ss_dssp HTCSSEEEEEECSEEEETTEEEESSCHHHHHH--HCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHHHH
T ss_pred ccCCCEEEECCchhhccccccccCCCHHHHHh--cCCCEEEEEeCCHHHHHHHHHhhcccCCCCccCHHHHHHHHHHHHH
Confidence 67899999942 11 1 122332 234 678888775444545 666 642 33332 333333
Q ss_pred HH-HHHhhCCCCcEEEE-CC--CHHHHHHHHHHHH
Q psy10228 179 MK-MEQEFGEFFTAVVQ-GD--MPEDIYQKVKEVI 209 (225)
Q Consensus 179 ~k-~E~~~~~~fd~vI~-Nd--dleea~~~lk~iI 209 (225)
.. ....+.+ .+++++ |+ ++++++++|.++|
T Consensus 160 ~~~~~~~~~~-~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 160 AATASAVLAG-STVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp HHHHHHHHHT-CEEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHh
Confidence 21 1111212 344455 55 4999999998876
No 53
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.91 E-value=2.4e-05 Score=63.14 Aligned_cols=93 Identities=13% Similarity=0.229 Sum_probs=52.4
Q ss_pred HHHHHHcCCeEEEEccHHH--------------HHHHHhhccCC-eEEEEecCCHHHHHHHh-ccC--CH----------
Q psy10228 117 VRDVAEKGKHCILDVSGNA--------------IKRLQVASLYP-VAIFIKPKSVESIMEMN-KRM--TE---------- 168 (225)
Q Consensus 117 V~~v~~~gk~~ildv~~~g--------------vk~L~~~~~~P-i~IFI~pps~~~L~~L~-~R~--se---------- 168 (225)
|...+..|..+|+|-.+.. +..+......| .+||+.+|.-..++++. +|. +.
T Consensus 79 i~~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~~ 158 (213)
T 2plr_A 79 ILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPG 158 (213)
T ss_dssp HHHHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCTT
T ss_pred HHHHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccccccccccccccccc
Confidence 4556678999999964322 22232211124 67888876433344576 665 11
Q ss_pred -------HHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228 169 -------EQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 169 -------eei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~ 211 (225)
+++.+++..... +. ...+-+.+|.++ ++++.+++|..+|..
T Consensus 159 ~d~~e~~~~~~~r~~~~~~-~~-~~~~~~~~Id~~~~~e~v~~~I~~~l~~ 207 (213)
T 2plr_A 159 LSPEEGFLKYQGLITEVYD-KL-VKDENFIVIDGTKTPKEIQIQIRKFVGE 207 (213)
T ss_dssp SCHHHHHHHHHHHHHHHHH-HH-TTTTTCEEEETTSCHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHH-HH-HhhCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 234444443321 11 112245666665 799999999998875
No 54
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.89 E-value=1.7e-05 Score=72.55 Aligned_cols=121 Identities=12% Similarity=0.137 Sum_probs=71.8
Q ss_pred CCccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHcCCeEE
Q psy10228 49 DQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKHCI 128 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~i 128 (225)
...+|+|+|+||||||+..-+-.+ -..|.|+ +.+.+ ..|+.....+...+.+|+.+|
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~-----~~~~~~i-~~D~~-----------------~~~~~~~~~~~~~l~~g~~vI 313 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV-----SAGYVHV-NRDTL-----------------GSWQRCVSSCQAALRQGKRVV 313 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG-----GGTCEEC-CGGGS-----------------CSHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----hcCcEEE-ccchH-----------------HHHHHHHHHHHHHHhcCCcEE
Confidence 357899999999999933322111 1157888 76665 247778888999999999999
Q ss_pred EEccH------HHHHHH-HhhccCCeEEEEecCCHHHHHH-HhccC--------CHHHHHHHHHHHHHHHHhhCCCCcEE
Q psy10228 129 LDVSG------NAIKRL-QVASLYPVAIFIKPKSVESIME-MNKRM--------TEEQAKKMYDRSMKMEQEFGEFFTAV 192 (225)
Q Consensus 129 ldv~~------~gvk~L-~~~~~~Pi~IFI~pps~~~L~~-L~~R~--------seeei~~rl~~a~k~E~~~~~~fd~v 192 (225)
+|... ..+..+ +..+....+||+.+ +.+++.+ +..|. .++++..++.... .+....+.||+|
T Consensus 314 iD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~-~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~-e~P~~~E~fd~v 391 (416)
T 3zvl_A 314 IDNTNPDVPSRARYIQCAKDAGVPCRCFNFCA-TIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQF-EPPTLAEGFLEI 391 (416)
T ss_dssp EESCCCSHHHHHHHHHHHHHHTCCEEEEEECC-CHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHC-CCCCGGGTCSEE
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeC-CHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhc-CCCCcccCCcEE
Confidence 99542 222222 21222235677755 5666664 65542 1233333333321 123345789987
Q ss_pred EE
Q psy10228 193 VQ 194 (225)
Q Consensus 193 I~ 194 (225)
+.
T Consensus 392 ~~ 393 (416)
T 3zvl_A 392 LE 393 (416)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 55
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.88 E-value=1.8e-06 Score=70.89 Aligned_cols=140 Identities=9% Similarity=0.034 Sum_probs=65.0
Q ss_pred CccEEEEccCCCCCCC---------------------ccc-CC----CCCCCCCCcceEE--ecCHHHHHHh----hhCC
Q psy10228 50 QEPFMLCYTQDDPTTE---------------------DTT-RA----RREYEVDGRDYHF--VSSREQMEKD----IQNH 97 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s---------------------~TT-Rp----~R~~E~dG~dY~F--V~s~eef~~~----i~~~ 97 (225)
...|.|+||+|||||+ ... ++ .+.+..+|..|++ + +.+.+.+. +..+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~l~~~v~~~l~~~ 100 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQW-DVEWLTHQLFRQLKAS 100 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSS-CHHHHHHHTGGGTTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCcccc-CHHHHHHHHHHHHhcC
Confidence 4589999999999990 000 11 1122223333333 3 45555443 3456
Q ss_pred cEEEEEEeCCcceeecHHHHHHHHHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCHHHHHHHHHH
Q psy10228 98 LFIEAGQYNDNLYGTSVASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDR 177 (225)
Q Consensus 98 ~FiE~~~~~gn~YGTs~~sV~~v~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~~rl~~ 177 (225)
..+.+..|.-. +++.... ...+..+.++|+|.....-..+ ..+...+|||.+|.-..++++.+|. +++.+++..
T Consensus 101 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~vIveg~~l~~~~~--~~~~d~~i~v~~~~~~~~~R~~~R~--~~~~~~~~~ 174 (201)
T 1rz3_A 101 HQLTLPFYDHE-TDTHSKR-TVYLSDSDMIMIEGVFLQRKEW--RPFFDFVVYLDCPREIRFARENDQV--KQNIQKFIN 174 (201)
T ss_dssp SEEEEEEEETT-TTEEEEE-EEECTTCSEEEEEETTTTSTTT--GGGCSEEEEECCC----------------CHHHHHH
T ss_pred CccccCceecc-CCCCCCc-eEEeCCCcEEEEechhhccHHH--HhhcCEEEEEeCCHHHHHHHHhcCC--HHHHHHHHh
Confidence 67777766543 3332110 0112357788888654211111 2345689999998755555666676 556666633
Q ss_pred HH-HHHHhh------CCCCcEEEECC
Q psy10228 178 SM-KMEQEF------GEFFTAVVQGD 196 (225)
Q Consensus 178 a~-k~E~~~------~~~fd~vI~Nd 196 (225)
.. ..+..| ...+|+||.|+
T Consensus 175 ~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 175 RYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp HHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred heeHHHHHHhCCCCcHhhCcEEecCC
Confidence 21 111111 35789999886
No 56
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.87 E-value=0.00013 Score=58.95 Aligned_cols=99 Identities=16% Similarity=0.189 Sum_probs=55.5
Q ss_pred ecHHHHHHHHHcC-CeEEEEccHH---HHHHHHhhccCC-eEEEEecCCHHHHHHHhccC--------CHHHHHHHHHHH
Q psy10228 112 TSVASVRDVAEKG-KHCILDVSGN---AIKRLQVASLYP-VAIFIKPKSVESIMEMNKRM--------TEEQAKKMYDRS 178 (225)
Q Consensus 112 Ts~~sV~~v~~~g-k~~ildv~~~---gvk~L~~~~~~P-i~IFI~pps~~~L~~L~~R~--------seeei~~rl~~a 178 (225)
.-.+.++..++.| ..+++|-.+. ....+...-..| .+|||.+|.-..++++.+|. +.+.+++|+...
T Consensus 83 ~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~ 162 (203)
T 1ukz_A 83 LLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTF 162 (203)
T ss_dssp HHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHH
Confidence 3345566667777 4677774332 222233211123 78999987644444565442 356777776654
Q ss_pred HHH----HHhhCCCCcE--EEECC-CHHHHHHHHHHHHHh
Q psy10228 179 MKM----EQEFGEFFTA--VVQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 179 ~k~----E~~~~~~fd~--vI~Nd-dleea~~~lk~iI~~ 211 (225)
.+. ...+ ...+. +|.|+ ++++++++|..+|..
T Consensus 163 ~~~~~~~~~~~-~~~~~vi~id~~~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 163 KETSMPVIEYF-ETKSKVVRVRCDRSVEDVYKDVQDAIRD 201 (203)
T ss_dssp HHTTHHHHHHH-HTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHH-HhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 321 1112 22343 34554 799999999998864
No 57
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.87 E-value=1.8e-05 Score=65.89 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=31.7
Q ss_pred HHHHHHHHHc--CCeEEEEccHHH---HHHHHh----hccCC-eEEEEecCCHHHHHHHhccC
Q psy10228 114 VASVRDVAEK--GKHCILDVSGNA---IKRLQV----ASLYP-VAIFIKPKSVESIMEMNKRM 166 (225)
Q Consensus 114 ~~sV~~v~~~--gk~~ildv~~~g---vk~L~~----~~~~P-i~IFI~pps~~~L~~L~~R~ 166 (225)
...|...+.+ |+.+|+|.-+.+ +..|.. .+..| .+||+..|.-..++++..|.
T Consensus 65 ~~~i~~~l~~~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 65 IPMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp HHHHHHHHHHHCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred HHHHHHHHhcccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 3446677777 999999954433 333422 23456 67888876544444576653
No 58
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.83 E-value=0.00082 Score=53.22 Aligned_cols=94 Identities=12% Similarity=0.207 Sum_probs=53.9
Q ss_pred HHHHHHHcCCeEEEEccH---------------HHHHHHH---hhccCC-eEEEEecCCHHHHHHHhccC--CHHHHHHH
Q psy10228 116 SVRDVAEKGKHCILDVSG---------------NAIKRLQ---VASLYP-VAIFIKPKSVESIMEMNKRM--TEEQAKKM 174 (225)
Q Consensus 116 sV~~v~~~gk~~ildv~~---------------~gvk~L~---~~~~~P-i~IFI~pps~~~L~~L~~R~--seeei~~r 174 (225)
.+...+.+|..+++|-.. .-+..+. ..+..| .+|||.+|.-..++++.+|. +.+++.++
T Consensus 75 ~i~~~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~~~~~~~~~ 154 (195)
T 2pbr_A 75 KIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFENKEFLEK 154 (195)
T ss_dssp THHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCCCCHHHHHH
T ss_pred HHHHHHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCccchHHHHHH
Confidence 345567789988888311 1122221 112244 78999887544444565554 34456666
Q ss_pred HHHHHH-HHHhhCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228 175 YDRSMK-MEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 175 l~~a~k-~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~ 211 (225)
+....+ ....+ ..+++|.|+ ++++++++|.+++..
T Consensus 155 ~~~~~~~~~~~~--~~~~~Id~~~~~~~~~~~i~~~l~~ 191 (195)
T 2pbr_A 155 VRKGFLELAKEE--ENVVVIDASGEEEEVFKEILRALSG 191 (195)
T ss_dssp HHHHHHHHHHHS--TTEEEEETTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhC--CCEEEEECCCCHHHHHHHHHHHHHH
Confidence 544321 11111 123777776 799999999999874
No 59
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.79 E-value=9.7e-06 Score=70.32 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=52.8
Q ss_pred CeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHH
Q psy10228 125 KHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDI 201 (225)
Q Consensus 125 k~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea 201 (225)
..||+|...-. .-........+|||.+|.-..++++..| .+.+++.+++...... ..+...+|++|.|+ +++++
T Consensus 182 ~~vIveg~~l~--~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~g~s~e~~~~ri~~q~~~-~~~~~~AD~vIdn~~s~eel 258 (281)
T 2f6r_A 182 TLCVIDAAMLL--EAGWQSMVHEVWTVVIPETEAVRRIVERDGLSEAAAQSRLQSQMSG-QQLVEQSNVVLSTLWESHVT 258 (281)
T ss_dssp CEEEEECTTTT--TTTGGGGCSEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHTSCCH-HHHHHTCSEEEECSSCHHHH
T ss_pred CEEEEEechhh--ccchHHhCCEEEEEcCCHHHHHHHHHHcCCCCHHHHHHHHHHcCCh-HhhHhhCCEEEECCCCHHHH
Confidence 57787754211 0001123458899999754444456555 3677777777654211 12223579999988 79999
Q ss_pred HHHHHHHHHhc
Q psy10228 202 YQKVKEVIQEQ 212 (225)
Q Consensus 202 ~~~lk~iI~~~ 212 (225)
+++|..++...
T Consensus 259 ~~~I~~~l~~l 269 (281)
T 2f6r_A 259 QSQVEKAWNLL 269 (281)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 60
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.79 E-value=0.00025 Score=55.99 Aligned_cols=94 Identities=7% Similarity=0.088 Sum_probs=53.2
Q ss_pred HHHHHHHHHc-CCeEEEEccH-------HHHHHHHhhccCCeEEEEecCCHHHHH-HHhccC----CHHHHHHHHHHHHH
Q psy10228 114 VASVRDVAEK-GKHCILDVSG-------NAIKRLQVASLYPVAIFIKPKSVESIM-EMNKRM----TEEQAKKMYDRSMK 180 (225)
Q Consensus 114 ~~sV~~v~~~-gk~~ildv~~-------~gvk~L~~~~~~Pi~IFI~pps~~~L~-~L~~R~----seeei~~rl~~a~k 180 (225)
.+.+...++. |..+|+|... .....++..+.....|||.+| .+.+. ++..|. +.+.++..++..
T Consensus 66 ~~~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~-~e~~~~R~~~R~~r~~~~~~~~~~~~~~-- 142 (183)
T 2vli_A 66 LDALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAP-LNVVLERLRRDGQPQVNVGTVEDRLNEL-- 142 (183)
T ss_dssp HHHHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECC-HHHHHHHHHTC----CCHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCC-HHHHHHHHHhccccchhHHHHHHHHHhh--
Confidence 3455666766 8888888532 222334333333455899886 45544 476664 233343322221
Q ss_pred HHHhhCCCCcEEEECC--CHHHHHHHHHHHHHhccC
Q psy10228 181 MEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQEQSG 214 (225)
Q Consensus 181 ~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~~~~~ 214 (225)
+ .+ .+-+ +|.++ ++++++++|..+|.....
T Consensus 143 -~-~~-~~~~-~Id~~~~~~~~~~~~I~~~l~~~~~ 174 (183)
T 2vli_A 143 -R-GE-QFQT-HIDTAGLGTQQVAEQIAAQVGLTLA 174 (183)
T ss_dssp -T-SG-GGCS-EEECTTCCHHHHHHHHHHHHTCCCC
T ss_pred -c-cc-ccce-EeeCCCCCHHHHHHHHHHHHHHhcC
Confidence 1 11 2224 77765 699999999999976543
No 61
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.76 E-value=2.9e-05 Score=63.25 Aligned_cols=91 Identities=15% Similarity=0.094 Sum_probs=51.7
Q ss_pred HHHHHcCCeEEEEccH---HHHHHHHhhccCCeEEEEecCCHHHHHH-HhccCC----HHHHHHHHHHHHHHHHhhCCCC
Q psy10228 118 RDVAEKGKHCILDVSG---NAIKRLQVASLYPVAIFIKPKSVESIME-MNKRMT----EEQAKKMYDRSMKMEQEFGEFF 189 (225)
Q Consensus 118 ~~v~~~gk~~ildv~~---~gvk~L~~~~~~Pi~IFI~pps~~~L~~-L~~R~s----eeei~~rl~~a~k~E~~~~~~f 189 (225)
...+..|..+|+|... .....+........+|||.+| .+++.+ +..|.. .+.++..+.. .+.-+....
T Consensus 95 ~~~~~~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~-~e~l~~Rl~~R~~~~~~~~~l~~~~~~---~~~~~~~~~ 170 (200)
T 4eun_A 95 DARADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGP-AEVIKGRMSKREGHFMPASLLQSQLAT---LEALEPDES 170 (200)
T ss_dssp HHHHHTTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECC-HHHHHHHHTTCSCCSSCGGGHHHHHHH---CCCCCTTSC
T ss_pred HHHHhcCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCC-HHHHHHHHHhcccCCCCHHHHHHHHHH---hCCCCCCCC
Confidence 3344678888888632 222222211111267889886 566654 777752 1222222211 111233447
Q ss_pred cEEEECC-CHHHHHHHHHHHHHhc
Q psy10228 190 TAVVQGD-MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 190 d~vI~Nd-dleea~~~lk~iI~~~ 212 (225)
+++|.|+ ++++++++|.++|...
T Consensus 171 ~~~Id~~~~~~e~~~~I~~~l~~~ 194 (200)
T 4eun_A 171 GIVLDLRQPPEQLIERALTWLDIA 194 (200)
T ss_dssp EEEEETTSCHHHHHHHHHHHHCCC
T ss_pred eEEEECCCCHHHHHHHHHHHHHhc
Confidence 8888876 7999999999998754
No 62
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.73 E-value=0.00017 Score=56.93 Aligned_cols=87 Identities=17% Similarity=0.169 Sum_probs=49.9
Q ss_pred HHHHcCCeEEEEcc---HHHHHHHHhhccCC-eEEEEecCCHHHHH-HHhccCC----HHHHHHHHHHHHHHHHh-hCCC
Q psy10228 119 DVAEKGKHCILDVS---GNAIKRLQVASLYP-VAIFIKPKSVESIM-EMNKRMT----EEQAKKMYDRSMKMEQE-FGEF 188 (225)
Q Consensus 119 ~v~~~gk~~ildv~---~~gvk~L~~~~~~P-i~IFI~pps~~~L~-~L~~R~s----eeei~~rl~~a~k~E~~-~~~~ 188 (225)
..+..|..+|+|.. ......++... .+ .+|||.+|- +.+. ++..|.. .+-+...+. ..+.- +...
T Consensus 75 ~~~~~~~~~vi~~~~~~~~~~~~l~~~~-~~~~vv~l~~~~-e~~~~R~~~R~~~~~~~~~~~~~~~---~~~~~~~~~~ 149 (175)
T 1knq_A 75 AMQRTNKVSLIVCSALKKHYRDLLREGN-PNLSFIYLKGDF-DVIESRLKARKGHFFKTQMLVTQFE---TLQEPGADET 149 (175)
T ss_dssp HHHHHCSEEEEECCCCSHHHHHHHHTTC-TTEEEEEEECCH-HHHHHHHHTSTTCCCCHHHHHHHHH---HCCCCCTTCT
T ss_pred HHHhcCCcEEEEeCchHHHHHHHHHhcC-CCEEEEEEECCH-HHHHHHHHhccCCCCchHHHHHHHH---hhhCcccCCC
Confidence 34456888999864 23333343221 23 789999864 5554 4776652 222221111 11111 2334
Q ss_pred CcEEEECC-CHHHHHHHHHHHHH
Q psy10228 189 FTAVVQGD-MPEDIYQKVKEVIQ 210 (225)
Q Consensus 189 fd~vI~Nd-dleea~~~lk~iI~ 210 (225)
.|++|.|+ +++++..+|...+.
T Consensus 150 ~~~~Id~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 150 DVLVVDIDQPLEGVVASTIEVIK 172 (175)
T ss_dssp TEEEEECSSCHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCHHHHHHHHHHHHh
Confidence 68888877 79999999998875
No 63
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.71 E-value=7.9e-05 Score=62.81 Aligned_cols=90 Identities=14% Similarity=0.124 Sum_probs=52.7
Q ss_pred cCCeEEEEccHH---HHHHHHhhccCC-eEEEEecCCHHHHHHHhccC--------CHHHHHHHHHHHHHH----HHhhC
Q psy10228 123 KGKHCILDVSGN---AIKRLQVASLYP-VAIFIKPKSVESIMEMNKRM--------TEEQAKKMYDRSMKM----EQEFG 186 (225)
Q Consensus 123 ~gk~~ildv~~~---gvk~L~~~~~~P-i~IFI~pps~~~L~~L~~R~--------seeei~~rl~~a~k~----E~~~~ 186 (225)
.++..|||--|. -+..|......| .+|++.+|.-..++++..|. +++.+++|++...+. ..-|.
T Consensus 107 ~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~ 186 (217)
T 3umf_A 107 KNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHYK 186 (217)
T ss_dssp TCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788886442 233444333334 78899987644444576664 246688888876431 11122
Q ss_pred CCCcE-EEEC-CCHHHHHHHHHHHHHhc
Q psy10228 187 EFFTA-VVQG-DMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 187 ~~fd~-vI~N-ddleea~~~lk~iI~~~ 212 (225)
..--. .|.. .++++.+++|..+|++.
T Consensus 187 ~~~~l~~Idg~~~~eeV~~~I~~~l~k~ 214 (217)
T 3umf_A 187 QQNKVITIDASGTVDAIFDKVNHELQKF 214 (217)
T ss_dssp TTTCEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred hcCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 22223 3443 37999999999999753
No 64
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.69 E-value=1e-05 Score=65.16 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=52.1
Q ss_pred CCeEEEEccHHHHHHHHhh---ccCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-C
Q psy10228 124 GKHCILDVSGNAIKRLQVA---SLYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-M 197 (225)
Q Consensus 124 gk~~ildv~~~gvk~L~~~---~~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-d 197 (225)
+..+|+|... +... .....+|||.+|.-..++++..| .+.+++.+++...... ..+...+|++|.|+ +
T Consensus 106 ~~~vi~d~~~-----l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R~~~~~~~~~~~i~~~~~~-~~~~~~ad~vId~~~~ 179 (203)
T 1uf9_A 106 APLVFLEIPL-----LFEKGWEGRLHGTLLVAAPLEERVRRVMARSGLSREEVLARERAQMPE-EEKRKRATWVLENTGS 179 (203)
T ss_dssp CSEEEEECTT-----TTTTTCGGGSSEEEEECCCHHHHHHHHHTTTCCTTHHHHHHHTTSCCH-HHHHHHCSEEECCSSH
T ss_pred CCEEEEEecc-----eeccCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHCCCh-hHHHHhCCEEEECCCC
Confidence 5677777431 1111 22348899998754444457677 4556666666542111 11223468888877 6
Q ss_pred HHHHHHHHHHHHHhccC
Q psy10228 198 PEDIYQKVKEVIQEQSG 214 (225)
Q Consensus 198 leea~~~lk~iI~~~~~ 214 (225)
+++++++|..++.....
T Consensus 180 ~~~~~~~i~~~~~~~~~ 196 (203)
T 1uf9_A 180 LEDLERALKAVLAELTG 196 (203)
T ss_dssp HHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999986543
No 65
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.66 E-value=0.00049 Score=55.65 Aligned_cols=88 Identities=10% Similarity=0.057 Sum_probs=51.8
Q ss_pred cCCeEEEEccHHHH---HH----HHhhccCC-eEEEEecCCHHHHHHHhccC----CHHHHHHHHHHHHHHH---HhhCC
Q psy10228 123 KGKHCILDVSGNAI---KR----LQVASLYP-VAIFIKPKSVESIMEMNKRM----TEEQAKKMYDRSMKME---QEFGE 187 (225)
Q Consensus 123 ~gk~~ildv~~~gv---k~----L~~~~~~P-i~IFI~pps~~~L~~L~~R~----seeei~~rl~~a~k~E---~~~~~ 187 (225)
.|..+|+|..+.++ .. +...+..| .+||+.+|....++++..|. +++.+++|+......- ..+..
T Consensus 97 ~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~~~~~~~ 176 (201)
T 2cdn_A 97 AANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYR 176 (201)
T ss_dssp GTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHHTT
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhHHHHHHhc
Confidence 36678888533222 11 22223445 78899886544444566553 4667777776653210 01224
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHH
Q psy10228 188 FFTAVVQGD-MPEDIYQKVKEVIQ 210 (225)
Q Consensus 188 ~fd~vI~Nd-dleea~~~lk~iI~ 210 (225)
..+++|.|+ ++++++++|.++|.
T Consensus 177 ~~~~~Id~~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 177 DQLKTVDAVGTMDEVFARALRALG 200 (201)
T ss_dssp TTEEEEECCSCHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHc
Confidence 466777775 79999999988764
No 66
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.65 E-value=3.7e-05 Score=62.32 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=47.3
Q ss_pred CCeEEEEecCCHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhccCCc
Q psy10228 145 YPVAIFIKPKSVESIMEMNKRM-TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQSGPS 216 (225)
Q Consensus 145 ~Pi~IFI~pps~~~L~~L~~R~-seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~~~~~ 216 (225)
...+|||.+|.-..++++..|+ +.+++.+++..... ...+....|++|.|+ ++++++++|.+++......|
T Consensus 124 ~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~-~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~~~~~~ 196 (204)
T 2if2_A 124 YDKLIVVYAPYEVCKERAIKRGMSEEDFERRWKKQMP-IEEKVKYADYVIDNSGSIEETYKQVKKVYEELTRDP 196 (204)
T ss_dssp SSEEEEECCCHHHHHHHHHHTCCCHHHHHHHHTTSCC-HHHHGGGCSEECCCSSCHHHHHHHHHHHHHTTCC--
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHhCCC-hhHHHhcCCEEEECCCCHHHHHHHHHHHHHHHhcCh
Confidence 4488999987434444566664 56677766655321 123344568888887 79999999999998777665
No 67
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.63 E-value=9e-05 Score=59.61 Aligned_cols=149 Identities=10% Similarity=0.131 Sum_probs=71.4
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCC-CCcceEEecCHHHHHHhhhCCcEEEEEEeCCccee------ecHHHHHHHHH
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEV-DGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYG------TSVASVRDVAE 122 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~-dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YG------Ts~~sV~~v~~ 122 (225)
...|+|+|++|||||+..-.-. +. - .|.|+ +-+++-... ..+-++++..+...- ...+.+..++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La---~~l~--g~~~i-d~d~~~~~~--~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~ 81 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIA---AELD--GFQHL-EVGKLVKEN--HFYTEYDTELDTHIIEEKDEDRLLDFMEPIMV 81 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHH---HHST--TEEEE-EHHHHHHHT--TCSCC------CCCCCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHH---HhcC--CCEEe-eHHHHHHHh--hhhhhHHHHhhhcccCCCCHHHHHHHHHHHHh
Confidence 3579999999999993221111 00 1 36788 666554432 112122222121110 11344556662
Q ss_pred cCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC-CHHHHHHHHHHH-----H-HHHHhhCCCCcEEEE-
Q psy10228 123 KGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM-TEEQAKKMYDRS-----M-KMEQEFGEFFTAVVQ- 194 (225)
Q Consensus 123 ~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~-seeei~~rl~~a-----~-k~E~~~~~~fd~vI~- 194 (225)
.+...++|... ...+.. .....+|||.+|.-..++++..|. +...+..++... . +....|. .|++|.
T Consensus 82 ~~g~~vi~~~~--~~~~~~-~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~q~~~~l~~~~~~~y~--~~~vi~~ 156 (184)
T 1y63_A 82 SRGNHVVDYHS--SELFPE-RWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYE--DDIVLVR 156 (184)
T ss_dssp SSSEEEEECSC--CTTSCG-GGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC--GGGEEEE
T ss_pred ccCCEEEeCch--Hhhhhh-ccCCEEEEEECCHHHHHHHHHhCCCChhhhHhhHHHHHHHHHHHHHHHHhc--cCcEEEC
Confidence 33355666542 111221 223478888886433344577776 544444443211 1 1111232 266665
Q ss_pred CC-CHHHHHHHHHHHHHh
Q psy10228 195 GD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 195 Nd-dleea~~~lk~iI~~ 211 (225)
|+ +++++..++..++..
T Consensus 157 n~~~~~~~~~~v~~i~~~ 174 (184)
T 1y63_A 157 ENDTLEQMAATVEEIRER 174 (184)
T ss_dssp ECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 54 799996666666543
No 68
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.53 E-value=2.5e-05 Score=66.72 Aligned_cols=154 Identities=11% Similarity=0.085 Sum_probs=78.8
Q ss_pred ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeC-CcceeecHHHHHHHHHcCCeEEE
Q psy10228 51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYN-DNLYGTSVASVRDVAEKGKHCIL 129 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~-gn~YGTs~~sV~~v~~~gk~~il 129 (225)
..|+|+|++|||||+..-.-...-+..|..+.++ +.+.+...+.. |.... ..+++.....++..++. ..+|+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~-~~D~~~~~l~~-----~~~~~e~~~~~~~~~~i~~~l~~-~~vIi 77 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL-GSDLIRESFPV-----WKEKYEEFIKKSTYRLIDSALKN-YWVIV 77 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE-CTHHHHTTSSS-----CCGGGHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE-CchHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHhhC-CEEEE
Confidence 4799999999999922111100000124444556 56666544332 11110 01223334556777766 78888
Q ss_pred EccH---HHHHHHHh---hccCC-eEEEEecCCHHHHHH-HhccC---CHHHHHHHHHHHHHHHHhh-CCCCcEEEECC-
Q psy10228 130 DVSG---NAIKRLQV---ASLYP-VAIFIKPKSVESIME-MNKRM---TEEQAKKMYDRSMKMEQEF-GEFFTAVVQGD- 196 (225)
Q Consensus 130 dv~~---~gvk~L~~---~~~~P-i~IFI~pps~~~L~~-L~~R~---seeei~~rl~~a~k~E~~~-~~~fd~vI~Nd- 196 (225)
|... .....+.. ....| ++||+.+| .+.+.+ +.+|. +++.++++..+..+....+ +...+.+|.++
T Consensus 78 D~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~Id~~~ 156 (260)
T 3a4m_A 78 DDTNYYNSMRRDLINIAKKYNKNYAIIYLKAS-LDVLIRRNIERGEKIPNEVIKKMYEKFDEPGKKYKWDEPFLIIDTTK 156 (260)
T ss_dssp CSCCCSHHHHHHHHHHHHHTTCEEEEEEEECC-HHHHHHHHHHTTCSSCHHHHHHHHHHCCCTTSSCGGGCCSEEEETTS
T ss_pred eCCcccHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHHhCCCCCCHHHHHHHHHHhcCccccCCCCCCEEEEeCCC
Confidence 8421 22222321 12234 67889875 455554 76665 3444443322210000001 02356788765
Q ss_pred --CHHHHHHHHHHHHHhc
Q psy10228 197 --MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 197 --dleea~~~lk~iI~~~ 212 (225)
+++++++.|.+.+...
T Consensus 157 ~~~~~ei~~~I~~~l~~~ 174 (260)
T 3a4m_A 157 DIDFNEIAKKLIEKSKEI 174 (260)
T ss_dssp CCCHHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHhcccCC
Confidence 5899999998887653
No 69
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.52 E-value=0.00011 Score=59.60 Aligned_cols=86 Identities=14% Similarity=0.166 Sum_probs=50.5
Q ss_pred CCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHH-
Q psy10228 124 GKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPE- 199 (225)
Q Consensus 124 gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dle- 199 (225)
+..+|++...-. . .........+|||.+|.-..++++..|. +.+++.+|+......+..+ ...|++|.|+ +++
T Consensus 105 ~~~vv~~~~~l~-e-~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~e~~~~r~~~q~~~~~~~-~~ad~vIdn~~~~~~ 181 (206)
T 1jjv_A 105 APYTLFVVPLLI-E-NKLTALCDRILVVDVSPQTQLARSAQRDNNNFEQIQRIMNSQVSQQERL-KWADDVINNDAELAQ 181 (206)
T ss_dssp SSEEEEECTTTT-T-TTCGGGCSEEEEEECCHHHHHHHHC-----CHHHHHHHHHHSCCHHHHH-HHCSEEEECCSCHHH
T ss_pred CCEEEEEechhh-h-cCcHhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhcCChHHHH-HhCCEEEECCCCccc
Confidence 567777742100 0 0001234578999987544455576663 6778888877421111112 2568999887 699
Q ss_pred ---HHHHHHHHHHHhc
Q psy10228 200 ---DIYQKVKEVIQEQ 212 (225)
Q Consensus 200 ---ea~~~lk~iI~~~ 212 (225)
++.++|..++...
T Consensus 182 ~~~~~~~~i~~~~~~~ 197 (206)
T 1jjv_A 182 NLPHLQQKVLELHQFY 197 (206)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 8999998888653
No 70
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.50 E-value=7.1e-05 Score=59.53 Aligned_cols=64 Identities=13% Similarity=0.252 Sum_probs=38.1
Q ss_pred eEEEEecCCHHHHHHHhcc--------CCHHHHHHHHHHHHHH----HHhhCC-CCcEEEECC-CHHHHHHHHHHHHH
Q psy10228 147 VAIFIKPKSVESIMEMNKR--------MTEEQAKKMYDRSMKM----EQEFGE-FFTAVVQGD-MPEDIYQKVKEVIQ 210 (225)
Q Consensus 147 i~IFI~pps~~~L~~L~~R--------~seeei~~rl~~a~k~----E~~~~~-~fd~vI~Nd-dleea~~~lk~iI~ 210 (225)
.+||+.+|.-..++++..| .+++.+++|+....+. ...|.. ..+++|.|+ ++++++++|.+++.
T Consensus 108 ~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 108 GVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAALG 185 (186)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence 6788988643333445544 2467777777654321 112221 125666665 79999999988763
No 71
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.46 E-value=0.00041 Score=58.02 Aligned_cols=95 Identities=9% Similarity=0.117 Sum_probs=52.8
Q ss_pred HHHHHHcCCeEEEEcc---------------HHHHHHHHh---hccCC-eEEEEecCCHHHHHHHhccCC----H---HH
Q psy10228 117 VRDVAEKGKHCILDVS---------------GNAIKRLQV---ASLYP-VAIFIKPKSVESIMEMNKRMT----E---EQ 170 (225)
Q Consensus 117 V~~v~~~gk~~ildv~---------------~~gvk~L~~---~~~~P-i~IFI~pps~~~L~~L~~R~s----e---ee 170 (225)
|+..+++|+++|.|=- .+-+..+.. ....| .+||+..|--..++++.+|+. + .+
T Consensus 86 i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~dr~E~~~~~ 165 (213)
T 4tmk_A 86 IKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFD 165 (213)
T ss_dssp HHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCTTTTSCHH
T ss_pred HHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHH
Confidence 5667789999999831 122233332 12456 789998864334445666542 1 23
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228 171 AKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 171 i~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~~ 212 (225)
..+++..+.. +..-...-..+|..+ ++++..++|.++|...
T Consensus 166 f~~rv~~~y~-~la~~~~~~~vIDa~~s~eeV~~~I~~~l~~~ 207 (213)
T 4tmk_A 166 FFNRTRARYL-ELAAQDKSIHTIDATQPLEAVMDAIRTTVTHW 207 (213)
T ss_dssp HHHHHHHHHH-HHHHTCTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHCCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 4445544431 121111223445543 7999999999888753
No 72
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.46 E-value=0.00098 Score=53.20 Aligned_cols=67 Identities=12% Similarity=0.195 Sum_probs=42.1
Q ss_pred eEEEEecCCHHHHHHHhccCCHH------HHHHHHHHHHH-HHHhhC-CCCcEEEECC-CHHHHHHHHHHHHHhcc
Q psy10228 147 VAIFIKPKSVESIMEMNKRMTEE------QAKKMYDRSMK-MEQEFG-EFFTAVVQGD-MPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 147 i~IFI~pps~~~L~~L~~R~see------ei~~rl~~a~k-~E~~~~-~~fd~vI~Nd-dleea~~~lk~iI~~~~ 213 (225)
.+|||.+|--..++++..|..+. +..+++..... ....+. ...+++|.|+ ++++++++|..++....
T Consensus 127 ~vi~L~~~~e~~~~Rl~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~~~ 202 (205)
T 2jaq_A 127 IVIYLRVSTKTAISRIKKRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSIK 202 (205)
T ss_dssp EEEEEECCHHHHHHHHHHHTCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHHC-
T ss_pred EEEEEeCCHHHHHHHHHHcCChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCCCHHHHHHHHHHHHHHhc
Confidence 78999987544444576665321 33345544322 122343 4568888876 79999999999997654
No 73
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.42 E-value=0.00026 Score=55.40 Aligned_cols=64 Identities=9% Similarity=0.187 Sum_probs=38.8
Q ss_pred CeEEEEecCCHHHHHHHh--cc-C-----CHHHHHHHHHHHHHH-HHhhCCCCcEEEECC--CHHHHHHHHHHHHH
Q psy10228 146 PVAIFIKPKSVESIMEMN--KR-M-----TEEQAKKMYDRSMKM-EQEFGEFFTAVVQGD--MPEDIYQKVKEVIQ 210 (225)
Q Consensus 146 Pi~IFI~pps~~~L~~L~--~R-~-----seeei~~rl~~a~k~-E~~~~~~fd~vI~Nd--dleea~~~lk~iI~ 210 (225)
..+|||.+|.-..++++. .| . ..++..+++...... +..+.. .|++|.|+ ++++++++|..++.
T Consensus 95 ~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 95 GTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQD-VAHYVVDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp SEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHH-HCSEEEETTSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHh-CcEEEECCCCCHHHHHHHHHHHhc
Confidence 378999987544444566 55 1 234444455443221 112333 67888876 69999999988775
No 74
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.39 E-value=0.0022 Score=52.19 Aligned_cols=88 Identities=9% Similarity=0.067 Sum_probs=49.8
Q ss_pred HHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHH----hccC---CHHHHHHHHHHHHHHHH-----hhCCC
Q psy10228 121 AEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEM----NKRM---TEEQAKKMYDRSMKMEQ-----EFGEF 188 (225)
Q Consensus 121 ~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L----~~R~---seeei~~rl~~a~k~E~-----~~~~~ 188 (225)
+..|..||++.-.-+. .......++|||.+|.-..++++ ..|+ +.+++.+++..-...+. .+...
T Consensus 115 ~~~~~~~vi~g~~~~~---~~~~~~~~vi~l~a~~e~~~~R~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~ 191 (219)
T 2h92_A 115 LAAEKGIVMDGRDIGT---VVLPDADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKA 191 (219)
T ss_dssp HHTTCCEEEEESSCCC---CCCTTCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCC
T ss_pred hccCCcEEEEcCCccc---eecCCCCEEEEEECCHHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccC
Confidence 4456678877421010 00112347899998643334443 2444 56778777753211111 11223
Q ss_pred Cc-EEEECC--CHHHHHHHHHHHHHh
Q psy10228 189 FT-AVVQGD--MPEDIYQKVKEVIQE 211 (225)
Q Consensus 189 fd-~vI~Nd--dleea~~~lk~iI~~ 211 (225)
.| ++|.|+ ++++++++|..++..
T Consensus 192 ~d~~~Id~~~~~~ee~~~~I~~~l~~ 217 (219)
T 2h92_A 192 DDAVTLDTTGKSIEEVTDEILAMVSQ 217 (219)
T ss_dssp TTCEEEECTTCCHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhc
Confidence 45 788876 799999999998864
No 75
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.38 E-value=0.0023 Score=50.54 Aligned_cols=104 Identities=10% Similarity=0.171 Sum_probs=54.9
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCc-ceee--cHHHHHHHHHcCCe
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDN-LYGT--SVASVRDVAEKGKH 126 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn-~YGT--s~~sV~~v~~~gk~ 126 (225)
...|+|+|++|||||+...+-. +. -.+.|+ +-+++.... ..|-++++.... .+.. -.+.+..++..|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~---~~--~~~~~~-~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 82 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA---SK--SGLKYI-NVGDLAREE--QLYDGYDEEYDCPILDEDRVVDELDNQMREGGV 82 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH---HH--HCCEEE-EHHHHHHHH--TCEEEEETTTTEEEECHHHHHHHHHHHHHHCCE
T ss_pred CCeEEEEeCCCCCHHHHHHHHH---HH--hCCeEE-EHHHHHhhc--chhhhhhhhhcCccCChHHHHHHHHHHHhcCCE
Confidence 3579999999999993222111 00 134566 455544332 445555543221 1222 34556677777865
Q ss_pred EEEEccHHHHHHHHhhccCCeEEEEecCCHHHHH-HHhccC
Q psy10228 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIM-EMNKRM 166 (225)
Q Consensus 127 ~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~-~L~~R~ 166 (225)
+ ++.... ..+. ......+||+.++. +++. ++..|.
T Consensus 83 v-v~~~~~--~~~~-~~~~~~vi~L~~~~-e~l~~R~~~r~ 118 (180)
T 3iij_A 83 I-VDYHGC--DFFP-ERWFHIVFVLRTDT-NVLYERLETRG 118 (180)
T ss_dssp E-EECSCC--TTSC-GGGCSEEEEEECCH-HHHHHHHHHTT
T ss_pred E-EEechh--hhcc-hhcCCEEEEEECCH-HHHHHHHHHcC
Confidence 4 443321 1111 12234789998864 5555 477776
No 76
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.38 E-value=0.00015 Score=57.46 Aligned_cols=89 Identities=9% Similarity=0.167 Sum_probs=49.9
Q ss_pred cCCeEEEEccH---HHHHHHHh---hccCC-eEEEEecCCHHHHHHHhccC--------CHHHHHHHHHHHHHHHH----
Q psy10228 123 KGKHCILDVSG---NAIKRLQV---ASLYP-VAIFIKPKSVESIMEMNKRM--------TEEQAKKMYDRSMKMEQ---- 183 (225)
Q Consensus 123 ~gk~~ildv~~---~gvk~L~~---~~~~P-i~IFI~pps~~~L~~L~~R~--------seeei~~rl~~a~k~E~---- 183 (225)
.+..+|+|-.+ .....+.. ....| .+||+.+|.-..++++..|. +.+.+++++........
T Consensus 85 ~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 164 (196)
T 1tev_A 85 QKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIID 164 (196)
T ss_dssp TCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHHHHH
Confidence 47888888332 22221211 11123 68999886544444554432 35666667665433221
Q ss_pred hhCCCCcE-EEECC-CHHHHHHHHHHHHHh
Q psy10228 184 EFGEFFTA-VVQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 184 ~~~~~fd~-vI~Nd-dleea~~~lk~iI~~ 211 (225)
.|...-++ +|.|+ ++++++++|..+|..
T Consensus 165 ~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 165 LYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 23333354 66665 799999999999875
No 77
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.31 E-value=1.1e-06 Score=77.10 Aligned_cols=68 Identities=12% Similarity=0.064 Sum_probs=33.8
Q ss_pred hhCCcEEEEEEeC-----CcceeecHHHHH---HHHHcCCeEEEEccHHHHH--HHHhhccCCeEEEEecCCHHHHHH
Q psy10228 94 IQNHLFIEAGQYN-----DNLYGTSVASVR---DVAEKGKHCILDVSGNAIK--RLQVASLYPVAIFIKPKSVESIME 161 (225)
Q Consensus 94 i~~~~FiE~~~~~-----gn~YGTs~~sV~---~v~~~gk~~ildv~~~gvk--~L~~~~~~Pi~IFI~pps~~~L~~ 161 (225)
+..+..+++..|. +..|+.....+. .+.+....+|++.-.-++. ...........|||.||....+++
T Consensus 87 l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl~R 164 (290)
T 1a7j_A 87 YGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWIQ 164 (290)
T ss_dssp HHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHHH
T ss_pred HHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHHHH
Confidence 3445566766661 345665543321 1112345666662221100 001123455899999998777776
No 78
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.31 E-value=0.00069 Score=52.78 Aligned_cols=62 Identities=10% Similarity=0.206 Sum_probs=39.0
Q ss_pred CeEEEEecCCHHHHHHHhccC-----C--HHHHHHHHHHHHHHHHhhCCCCcEEEECC--CHHHHHHHHHHHHHhc
Q psy10228 146 PVAIFIKPKSVESIMEMNKRM-----T--EEQAKKMYDRSMKMEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 146 Pi~IFI~pps~~~L~~L~~R~-----s--eeei~~rl~~a~k~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~~~ 212 (225)
..+|||.+|.-..++++..|. + .+.+++++... ...+.. .|++| |+ ++++++++|..++...
T Consensus 94 ~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~---~~~~~~-~~~~i-~~~~~~~~~~~~i~~~l~~~ 164 (168)
T 2pt5_A 94 GTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEER---RKIYSK-ADIKV-KGEKPPEEVVKEILLSLEGN 164 (168)
T ss_dssp SEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHHH---HHHHTT-SSEEE-ECSSCHHHHHHHHHHHHHTS
T ss_pred CEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHHHH---HHHHHh-CCEEE-CCCCCHHHHHHHHHHHHHhc
Confidence 488999987544444555432 1 23344444432 123445 89988 76 6999999999988753
No 79
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.26 E-value=0.00025 Score=56.36 Aligned_cols=66 Identities=11% Similarity=0.183 Sum_probs=37.0
Q ss_pred CeEEEEecCCHHHHHHHhccC-----CHHHHHHHHHHHHH-HHHhhCCCCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228 146 PVAIFIKPKSVESIMEMNKRM-----TEEQAKKMYDRSMK-MEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQE 211 (225)
Q Consensus 146 Pi~IFI~pps~~~L~~L~~R~-----seeei~~rl~~a~k-~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~~ 211 (225)
..+|||.+|--..++++..|. +.++..+++..... .+..|....|.+|.|+ ++++++++|..++..
T Consensus 95 ~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~Idt~~~s~ee~~~~I~~~l~~ 168 (184)
T 2iyv_A 95 HTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQV 168 (184)
T ss_dssp SCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHHCSEEEECSSSCHHHHHHHHHTTSCC
T ss_pred CeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHhccCCEEEECCCCCHHHHHHHHHHHHhh
Confidence 478999986433334465553 11112222332211 1122334568889887 699999999887753
No 80
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.22 E-value=0.0022 Score=52.78 Aligned_cols=96 Identities=11% Similarity=0.125 Sum_probs=54.1
Q ss_pred HHHHHHHH-cCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHH-HHhc--cCCHHHHHHHHHHHHHHHHhh-----
Q psy10228 115 ASVRDVAE-KGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIM-EMNK--RMTEEQAKKMYDRSMKMEQEF----- 185 (225)
Q Consensus 115 ~sV~~v~~-~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~-~L~~--R~seeei~~rl~~a~k~E~~~----- 185 (225)
+.+++++. +...||++--+.++ -|.. .-..+.|||.+| .+.+. ++.+ ..+.+++.+.+..-.+....+
T Consensus 88 ~~i~~la~~~~~~~Vi~Gr~g~~-vl~~-~~~~~~V~L~A~-~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R~~~y~~~~ 164 (201)
T 3fdi_A 88 NFIRKKANEEKESFVIVGRCAEE-ILSD-NPNMISAFILGD-KDTKTKRVMEREGVDEKTALNMMKKMDKMRKVYHNFYC 164 (201)
T ss_dssp HHHHHHHHTSCCCEEEESTTHHH-HTTT-CTTEEEEEEEEC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcCCCEEEEECCcch-hcCC-CCCeEEEEEECC-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445541 44468877544333 2432 113488999986 45444 4433 235666655554332211211
Q ss_pred ------CCCCcEEEECC--CHHHHHHHHHHHHHhcc
Q psy10228 186 ------GEFFTAVVQGD--MPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 186 ------~~~fd~vI~Nd--dleea~~~lk~iI~~~~ 213 (225)
...+|.+|.++ +++++++.|...+...+
T Consensus 165 ~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~~~ 200 (201)
T 3fdi_A 165 ESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDSRD 200 (201)
T ss_dssp SSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHTC-
T ss_pred CCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 12478888876 69999999999987654
No 81
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.22 E-value=2.4e-07 Score=75.61 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=49.5
Q ss_pred cceeecHHHHHHHHHcCCeEEEEccH------HHH-----------HHHHhh-----cc-CC-eEEEEecCCHHHHHHHh
Q psy10228 108 NLYGTSVASVRDVAEKGKHCILDVSG------NAI-----------KRLQVA-----SL-YP-VAIFIKPKSVESIMEMN 163 (225)
Q Consensus 108 n~YGTs~~sV~~v~~~gk~~ildv~~------~gv-----------k~L~~~-----~~-~P-i~IFI~pps~~~L~~L~ 163 (225)
+.|++ .+.|...++.|..+|+|-.. ++. ..+... .+ .| .+||+..|.-..+.++.
T Consensus 73 ~r~~~-~~~i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~ 151 (214)
T 1gtv_A 73 DRAGA-VHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSR 151 (214)
T ss_dssp HHHEE-HHHHHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHH
T ss_pred HHhhh-HHHHHHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHH
Confidence 34555 55666666778889988653 221 112211 21 34 57888776433334465
Q ss_pred ccCC------------HHHHHHHHHHHHHHHHhhCC-CCc-EEEECC-CHHHHHHHHH
Q psy10228 164 KRMT------------EEQAKKMYDRSMKMEQEFGE-FFT-AVVQGD-MPEDIYQKVK 206 (225)
Q Consensus 164 ~R~s------------eeei~~rl~~a~k~E~~~~~-~fd-~vI~Nd-dleea~~~lk 206 (225)
+|.. ..++.+++..... +..... ..+ .+|.|+ ++++..++|.
T Consensus 152 ~R~~~~~~~~~d~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~vId~~~~~~~v~~~i~ 208 (214)
T 1gtv_A 152 GRAQRDPGRARDNYERDAELQQRTGAVYA-ELAAQGWGGRWLVVGADVDPGRLAATLA 208 (214)
T ss_dssp HHHHEBBEEEEEEEEEEHHHHHHHHHHHH-HHHHEEEEEEEEEEEEEEBHHHHHHHHC
T ss_pred cccccccccccccccccHHHHHHHHHHHH-HHHHhCCCCCEEEEeCCCCHHHHHHHhc
Confidence 5421 1456666655431 221111 134 455554 6888777764
No 82
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.21 E-value=0.00033 Score=54.95 Aligned_cols=60 Identities=13% Similarity=0.259 Sum_probs=36.0
Q ss_pred eEEEEecCCHHHHHHHhcc-----C--C-HHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHH
Q psy10228 147 VAIFIKPKSVESIMEMNKR-----M--T-EEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVI 209 (225)
Q Consensus 147 i~IFI~pps~~~L~~L~~R-----~--s-eeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI 209 (225)
.+|||.+|--..++++..| . + .+++++++... +..+....|++|.|+ ++++++++|.++|
T Consensus 99 ~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r---~~~~~~~a~~~Id~~~~~e~~~~~I~~~l 167 (168)
T 1zuh_A 99 TTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKR---QALYEKNASFIIDARGGLNNSLKQVLQFI 167 (168)
T ss_dssp EEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHH---HHHHHHTCSEEEEGGGCHHHHHHHHHHC-
T ss_pred EEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHH---HHHHHHHCCEEEECCCCHHHHHHHHHHHh
Confidence 7899998754445557655 1 2 23444444322 122334578999877 6999998887654
No 83
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.16 E-value=0.00032 Score=55.81 Aligned_cols=108 Identities=8% Similarity=0.081 Sum_probs=55.6
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEE----EEE-EeCCcceeecHHHHHHHHHcC
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFI----EAG-QYNDNLYGTSVASVRDVAEKG 124 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~Fi----E~~-~~~gn~YGTs~~sV~~v~~~g 124 (225)
...|+|+|++|||||+...+-.. .-| +.|+ +.+.+...+..+ +- +|. ......|+...+.+..+++.|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~---~l~--~~~i-~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 77 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT---GLR--LPLL-SKDAFKEVMFDG-LGWSDREWSRRVGATAIMMLYHTAATILQSG 77 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH---HHT--CCEE-EHHHHHHHHHHH-HCCCSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH---HcC--CeEe-cHHHHHHHHHHh-cCccchHHHHHhhHHHHHHHHHHHHHHHhCC
Confidence 35799999999999932211110 001 3455 556554433221 10 000 000112344444566778889
Q ss_pred CeEEEEccHH------HHHHHHhhccCC-eEEEEecCCHHHHHH-Hhcc
Q psy10228 125 KHCILDVSGN------AIKRLQVASLYP-VAIFIKPKSVESIME-MNKR 165 (225)
Q Consensus 125 k~~ildv~~~------gvk~L~~~~~~P-i~IFI~pps~~~L~~-L~~R 165 (225)
..+|+|.... .+..|......| .+||+.+| .+++.+ +..|
T Consensus 78 ~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~-~e~~~~R~~~R 125 (193)
T 2rhm_A 78 QSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVAS-GDVLVERILSR 125 (193)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECC-HHHHHHHHHHH
T ss_pred CeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHHh
Confidence 9999996542 122233333345 67888875 555554 6544
No 84
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.14 E-value=0.0053 Score=50.98 Aligned_cols=88 Identities=11% Similarity=0.042 Sum_probs=49.4
Q ss_pred HHcCCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHH----hccC---CHHHHHHHHHHHHHHHHh-----hCCC
Q psy10228 121 AEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEM----NKRM---TEEQAKKMYDRSMKMEQE-----FGEF 188 (225)
Q Consensus 121 ~~~gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L----~~R~---seeei~~rl~~a~k~E~~-----~~~~ 188 (225)
+..|..||++.-.-+...+. ....+|||.++.-..++++ ..|+ +.+++.+++..-...+.. +...
T Consensus 132 ~~~~~~~v~~g~~~~~~~l~---~~d~vi~L~a~~e~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~ 208 (236)
T 1q3t_A 132 IAQQGGIVMDGRDIGTVVLP---QAELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQA 208 (236)
T ss_dssp HHTTSCEEEECSSCSSSSGG---GCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCC
T ss_pred hcccCCEEEECCcchhhhcc---CCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhccccccccc
Confidence 34566788773321110111 2347899998754444444 4454 567777666542111111 1122
Q ss_pred Cc-EEEECC--CHHHHHHHHHHHHHh
Q psy10228 189 FT-AVVQGD--MPEDIYQKVKEVIQE 211 (225)
Q Consensus 189 fd-~vI~Nd--dleea~~~lk~iI~~ 211 (225)
.| ++|.|+ ++++++++|..++..
T Consensus 209 ~d~~vId~~~~s~eev~~~I~~~l~~ 234 (236)
T 1q3t_A 209 EDAVYLDTTGLNIQEVVEKIKAEAEK 234 (236)
T ss_dssp TTCEEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34 778776 699999999998864
No 85
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.12 E-value=0.00078 Score=55.12 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHH----HhhCC------CCcEEEECC-CHHHHHHHHHHHH
Q psy10228 168 EEQAKKMYDRSMKME----QEFGE------FFTAVVQGD-MPEDIYQKVKEVI 209 (225)
Q Consensus 168 eeei~~rl~~a~k~E----~~~~~------~fd~vI~Nd-dleea~~~lk~iI 209 (225)
++.+++|+....+.- ..|.. ....+|..+ ++++.+++|..+|
T Consensus 161 ~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 161 EETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 567888887653210 11221 122334433 7999999998876
No 86
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.06 E-value=0.001 Score=54.90 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCc----EEEEC-CCHHHHHHHHHHHHHhc
Q psy10228 168 EEQAKKMYDRSMKMEQEFGEFFT----AVVQG-DMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 168 eeei~~rl~~a~k~E~~~~~~fd----~vI~N-ddleea~~~lk~iI~~~ 212 (225)
.+.+++|+....+.-.....+|+ ++++| +++++++++|..+|...
T Consensus 166 ~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~~~~~v~~~i~~~l~~~ 215 (227)
T 1zd8_A 166 PETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGTETNKIWPYVYAFLQTK 215 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCCCHHHHHHHHHHHHHhh
Confidence 46777887665432111112222 34444 48999999999999753
No 87
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.05 E-value=2e-05 Score=74.94 Aligned_cols=158 Identities=9% Similarity=0.059 Sum_probs=78.7
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCc-EEEEEEeCCcceeecHHHHHHHHHcCCeEE
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHL-FIEAGQYNDNLYGTSVASVRDVAEKGKHCI 128 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~-FiE~~~~~gn~YGTs~~sV~~v~~~gk~~i 128 (225)
...|+|+|++|||||+....-.+.-...|.+++|+ +.+.+...+..+. |-+ ..... .+..-...++.+++.|..+|
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~l-d~D~ir~~l~~~~~f~~-~er~~-~l~~i~~~~~~~l~~G~~VI 448 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLL-DGDVVRTHLSRGLGFSK-EDRIT-NILRVGFVASEIVKHNGVVI 448 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE-CHHHHHHHTCTTCCSSH-HHHHH-HHHHHHHHHHHHHHTTCEEE
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEE-CchHhhhhhcccccccH-HHHHH-HHHHHHHHHHHHHhCCCEEE
Confidence 35789999999999922111111001257889999 8888776653221 100 00000 01111223455678899999
Q ss_pred EEccH---HHHHHHHhh-ccCC-eEEEEecCCHHHHH-HHhccCCHHHHHHHHHHHHHHHHhhC--CCCcEEEECC--CH
Q psy10228 129 LDVSG---NAIKRLQVA-SLYP-VAIFIKPKSVESIM-EMNKRMTEEQAKKMYDRSMKMEQEFG--EFFTAVVQGD--MP 198 (225)
Q Consensus 129 ldv~~---~gvk~L~~~-~~~P-i~IFI~pps~~~L~-~L~~R~seeei~~rl~~a~k~E~~~~--~~fd~vI~Nd--dl 198 (225)
+|... .....++.. .-.. ++|||.+|- +.+. ++.+++..++....+..-..+...+. ...|.+|.|+ ++
T Consensus 449 ~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~-e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~~e~~~~adivIDts~~s~ 527 (546)
T 2gks_A 449 CALVSPYRSARNQVRNMMEEGKFIEVFVDAPV-EVCEERDVKGLYKKAKEGLIKGFTGVDDPYEPPVAPEVRVDTTKLTP 527 (546)
T ss_dssp EECCCCCHHHHHHHHTTSCTTCEEEEEEECCG-GGHHHHCCSSHHHHC------CCBTTTBCCCCCSSCSEEEETTTSCH
T ss_pred EEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCH-HHHHHHhhccccccccHHHHHHHHhhhhccccccCCcEEEECCCCCH
Confidence 99421 111122210 1113 789999854 5443 34322111100001110000000111 2468888886 79
Q ss_pred HHHHHHHHHHHHh
Q psy10228 199 EDIYQKVKEVIQE 211 (225)
Q Consensus 199 eea~~~lk~iI~~ 211 (225)
+++.++|...+..
T Consensus 528 eev~~~I~~~L~~ 540 (546)
T 2gks_A 528 EESALKILEFLKK 540 (546)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 88
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.05 E-value=0.0084 Score=50.33 Aligned_cols=94 Identities=19% Similarity=0.272 Sum_probs=53.7
Q ss_pred HHHHHHHcCCeEEEEccHHHHHHHH--hhccCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHh-hC----
Q psy10228 116 SVRDVAEKGKHCILDVSGNAIKRLQ--VASLYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQE-FG---- 186 (225)
Q Consensus 116 sV~~v~~~gk~~ildv~~~gvk~L~--~~~~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~-~~---- 186 (225)
.|+++++++ .||++--+.|+ -|. ...-..+.|||.+|--..++++.++ .+.+++.+.+..-.+.... |.
T Consensus 108 ~i~~la~~~-~~Vi~Grggg~-vl~~~~~~~~~~~VfL~A~~e~r~~Ri~~~~~~~~~~a~~~I~~~d~~R~~~Y~~ytg 185 (223)
T 3hdt_A 108 VMRELAESE-PCIFVGRAAGY-VLDQDEDIERLIRIFVYTDKVKKVQRVMEVDCIDEERAKRRIKKIEKERKEYYKYFTG 185 (223)
T ss_dssp HHHHHHHHS-CEEEESTTHHH-HHHHCTTCCEEEEEEEECCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCC-CEEEEeCCcch-hcccccCCCCeEEEEEECCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456666655 57776334343 231 1111248899999643333344332 3555555555443221121 11
Q ss_pred ------CCCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228 187 ------EFFTAVVQGD--MPEDIYQKVKEVIQE 211 (225)
Q Consensus 187 ------~~fd~vI~Nd--dleea~~~lk~iI~~ 211 (225)
..+|.+|..+ +++++++.|...+..
T Consensus 186 ~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~ 218 (223)
T 3hdt_A 186 SEWHSMKNYDLPINTTKLTLEETAELIKAYIRL 218 (223)
T ss_dssp SCTTCGGGCSEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCcccCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 3688988876 699999999998875
No 89
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.04 E-value=0.0085 Score=49.48 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=49.8
Q ss_pred HHHHHHHcCCeEEEEccH---------------HHHHHHHh---hccCC-eEEEEecCCHHHHHHHhccCC------HH-
Q psy10228 116 SVRDVAEKGKHCILDVSG---------------NAIKRLQV---ASLYP-VAIFIKPKSVESIMEMNKRMT------EE- 169 (225)
Q Consensus 116 sV~~v~~~gk~~ildv~~---------------~gvk~L~~---~~~~P-i~IFI~pps~~~L~~L~~R~s------ee- 169 (225)
.|...+++|+++|.|--. +-+..+.. ..+.| .+||+..|--..++++.+|.. .+
T Consensus 77 ~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~ 156 (205)
T 4hlc_A 77 KVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQED 156 (205)
T ss_dssp THHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHHH
T ss_pred HHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccC
Confidence 356677889999988321 22233332 23457 789998864444555766652 11
Q ss_pred -HHHHHHHHHHHHHHhhCCCC-cEEEE-CCCHHHHHHHHHHHHHh
Q psy10228 170 -QAKKMYDRSMKMEQEFGEFF-TAVVQ-GDMPEDIYQKVKEVIQE 211 (225)
Q Consensus 170 -ei~~rl~~a~k~E~~~~~~f-d~vI~-Nddleea~~~lk~iI~~ 211 (225)
+..+++..+.. ++.-...- -.+|. |.++|+..+++.++|..
T Consensus 157 ~~f~~~v~~~Y~-~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~ 200 (205)
T 4hlc_A 157 LKFHEKVIEGYQ-EIIHNESQRFKSVNADQPLENVVEDTYQTIIK 200 (205)
T ss_dssp HHHHHHHHHHHH-HHHHSCCTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 23344443321 22111111 23444 33789988888887764
No 90
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.01 E-value=0.00061 Score=54.43 Aligned_cols=108 Identities=6% Similarity=0.030 Sum_probs=52.7
Q ss_pred ccEEEEccCCCCCCC---cccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeC--CcceeecHHHHHHHHHcCC
Q psy10228 51 EPFMLCYTQDDPTTE---DTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYN--DNLYGTSVASVRDVAEKGK 125 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s---~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~--gn~YGTs~~sV~~v~~~gk 125 (225)
.+++|+||+|||||+ .-.. | ..| ..|+ +-+++..+...+.+.++.... ...|..-...+...+..+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~-~----~~g--~~~i-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA-Q----LDN--SAYI-EGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH-H----SSS--EEEE-EHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCcHHHHHHHHhc-c----cCC--eEEE-cccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 478999999999991 1111 1 112 2466 677777655444443322000 0111111222333445677
Q ss_pred eEEEEc--cHHHHHHHHhh----ccC-Ce-EEEEecCCHHHHHH-HhccCC
Q psy10228 126 HCILDV--SGNAIKRLQVA----SLY-PV-AIFIKPKSVESIME-MNKRMT 167 (225)
Q Consensus 126 ~~ildv--~~~gvk~L~~~----~~~-Pi-~IFI~pps~~~L~~-L~~R~s 167 (225)
.+|+|. .....+.++.. +.. .. +|++. ++.+.|.+ +..|..
T Consensus 75 ~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~-~~~e~l~~R~~~r~~ 124 (189)
T 2bdt_A 75 DVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILW-TNREELLRRDALRKK 124 (189)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEE-CCHHHHHHHTTTSCC
T ss_pred cEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEe-CCHHHHHHHHHhccc
Confidence 888885 33322222211 111 33 34554 56777765 666653
No 91
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.99 E-value=0.0028 Score=52.58 Aligned_cols=96 Identities=18% Similarity=0.186 Sum_probs=55.4
Q ss_pred HHHHHHHcCCeEEEEccHHH---HHHH----HhhccCC-eEEEEecCCHHHHHHHhccC---------------------
Q psy10228 116 SVRDVAEKGKHCILDVSGNA---IKRL----QVASLYP-VAIFIKPKSVESIMEMNKRM--------------------- 166 (225)
Q Consensus 116 sV~~v~~~gk~~ildv~~~g---vk~L----~~~~~~P-i~IFI~pps~~~L~~L~~R~--------------------- 166 (225)
-|.+.+.+....|||--|.- +..| ...+..| .+|++.+|.-..++++..|.
T Consensus 67 lv~~~l~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~ 146 (206)
T 3sr0_A 67 LIEEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVK 146 (206)
T ss_dssp HHHHHCCSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCC
T ss_pred HHHHhhccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCce
Confidence 34444555556788854422 2222 2233444 68899988655455565541
Q ss_pred -------CHHHHHHHHHHHHHH----HHhhCCCCcE-EEEC-CCHHHHHHHHHHHHHh
Q psy10228 167 -------TEEQAKKMYDRSMKM----EQEFGEFFTA-VVQG-DMPEDIYQKVKEVIQE 211 (225)
Q Consensus 167 -------seeei~~rl~~a~k~----E~~~~~~fd~-vI~N-ddleea~~~lk~iI~~ 211 (225)
+++.+++|++...+. ...|....-+ .|.. .++++.+++|..+|.+
T Consensus 147 l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 147 VIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD 204 (206)
T ss_dssp CBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred ecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 367899999987431 1122222233 3443 3799999999999864
No 92
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.98 E-value=0.0002 Score=60.54 Aligned_cols=151 Identities=14% Similarity=0.038 Sum_probs=68.8
Q ss_pred CCccEEEEccCCCCCC-----------C-------cccCCCCCCCCCCcceEEecCHHHHHHhhhC-CcEEEEE---EeC
Q psy10228 49 DQEPFMLCYTQDDPTT-----------E-------DTTRARREYEVDGRDYHFVSSREQMEKDIQN-HLFIEAG---QYN 106 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~-----------s-------~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~-~~FiE~~---~~~ 106 (225)
...+|+|.|++||||| . .|||.|..... | +.+.+.+.+ +.+-.+. -|.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~-g---------~~ir~~l~~~~~~~~~~e~llf~ 89 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLL-N---------ESVRNLLFKAQGLDSLSELLFFI 89 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHH-H---------HHHHHHHHTCSSCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChH-H---------HHHHHHHhCCCCCCHHHHHHHHH
Confidence 3568999999999998 2 34888753221 1 222222221 1100000 011
Q ss_pred CcceeecHHHHHHHHHcCCeEEEEccH---------------HHHHHHHhh--ccCC-eEEEEecCCHHHHHHH-hccCC
Q psy10228 107 DNLYGTSVASVRDVAEKGKHCILDVSG---------------NAIKRLQVA--SLYP-VAIFIKPKSVESIMEM-NKRMT 167 (225)
Q Consensus 107 gn~YGTs~~sV~~v~~~gk~~ildv~~---------------~gvk~L~~~--~~~P-i~IFI~pps~~~L~~L-~~R~s 167 (225)
.+.|..-.+.|+..+++|+++|.|=.. +-+..|... +..| .+||+..|--..++++ +.|..
T Consensus 90 a~R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri~rdr~E 169 (223)
T 3ld9_A 90 AMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRSCKNGYE 169 (223)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC--------------
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHhccCccc
Confidence 122222223355677889999988422 112233221 1346 7899987643444445 22222
Q ss_pred H--HHHHHHHHHHHH-HHHhhCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228 168 E--EQAKKMYDRSMK-MEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 168 e--eei~~rl~~a~k-~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~ 211 (225)
. .+..+++..+.. +...+ +.-..+|.++ ++++. ++|.++|..
T Consensus 170 ~~~~e~~~rv~~~y~~la~~~-~~~~~vIDa~~sieeV-~~I~~~l~~ 215 (223)
T 3ld9_A 170 FADMEFYYRVRDGFYDIAKKN-PHRCHVITDKSETYDI-DDINFVHLE 215 (223)
T ss_dssp --CHHHHHHHHHHHHHHHHHC-TTTEEEEESSCSSSCC-CHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCEEEEcCCCCHHHH-HHHHHHHHH
Confidence 2 244445554431 11122 2235666654 56666 666666654
No 93
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.91 E-value=0.00047 Score=55.05 Aligned_cols=150 Identities=13% Similarity=0.151 Sum_probs=69.0
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceee--cH---H---HH-HHH
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGT--SV---A---SV-RDV 120 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGT--s~---~---sV-~~v 120 (225)
...|+|+|++|||||+....-...-...|..+.|+ +-+.+...+..+ ..|-. .. . .+ +..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~-~~d~~~~~~~~~----------~~~~~~~r~~~~~~~~~~~~~~ 81 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL-DGDWARTTVSEG----------AGFTREERLRHLKRIAWIARLL 81 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE-EHHHHHTTTTTT----------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe-eHHHHHHHHhhc----------cCCChhhHHHHHHHHHHHHHHH
Confidence 46899999999999921111100001124455676 556654433211 11110 00 0 01 222
Q ss_pred HHcCCeEEEEccH--HH----HHHHHhhccCC-eEEEEecCCHHHHHH-HhccCCHHHHHHHHHHHHHHHHhhC--CCCc
Q psy10228 121 AEKGKHCILDVSG--NA----IKRLQVASLYP-VAIFIKPKSVESIME-MNKRMTEEQAKKMYDRSMKMEQEFG--EFFT 190 (225)
Q Consensus 121 ~~~gk~~ildv~~--~g----vk~L~~~~~~P-i~IFI~pps~~~L~~-L~~R~seeei~~rl~~a~k~E~~~~--~~fd 190 (225)
++.|.++++|... ++ ++.+....-.| .+||+.+| .+.+.+ +.++.-.......+.........|. ...+
T Consensus 82 ~~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~-~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 160 (186)
T 2yvu_A 82 ARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKAS-LEEVIRRDPKGLYKKALKGELENFTGITDPYEPPENPQ 160 (186)
T ss_dssp HTTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHCHHHHHHHHHTTCCSSCHHHHSCCCCCSSCS
T ss_pred HhCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCC-HHHHHHhhhhhhhhHHhhcchhhhhhhhhcccCCCCCc
Confidence 4678888877532 11 22221111134 67899876 454432 2111000000000000000111132 2457
Q ss_pred EEEECC--CHHHHHHHHHHHHHh
Q psy10228 191 AVVQGD--MPEDIYQKVKEVIQE 211 (225)
Q Consensus 191 ~vI~Nd--dleea~~~lk~iI~~ 211 (225)
.+|.++ +++++.++|...|..
T Consensus 161 ~~Id~~~~~~~ev~~~I~~~l~~ 183 (186)
T 2yvu_A 161 LVLDTESNTIEHNVSYLYSLVKA 183 (186)
T ss_dssp EEEETTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHH
Confidence 888875 689999999988864
No 94
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.88 E-value=0.00018 Score=57.14 Aligned_cols=25 Identities=36% Similarity=0.341 Sum_probs=20.6
Q ss_pred CCCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228 187 EFFTAVVQGD--MPEDIYQKVKEVIQE 211 (225)
Q Consensus 187 ~~fd~vI~Nd--dleea~~~lk~iI~~ 211 (225)
...|++|.|+ +++++.++|..++..
T Consensus 149 ~~ad~vid~~~~~~~~~~~~i~~~l~~ 175 (179)
T 2pez_A 149 EAPELVLKTDSCDVNDCVQQVVELLQE 175 (179)
T ss_dssp SSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 3568888886 699999999998875
No 95
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.77 E-value=0.011 Score=48.40 Aligned_cols=14 Identities=7% Similarity=0.033 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..|+|+|++|||||
T Consensus 6 ~~I~l~G~~GsGKs 19 (217)
T 3be4_A 6 HNLILIGAPGSGKG 19 (217)
T ss_dssp CEEEEEECTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 46899999999999
No 96
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.68 E-value=3.4e-05 Score=63.41 Aligned_cols=154 Identities=8% Similarity=0.047 Sum_probs=73.0
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCC-CCCcceEEecCHHHHHHhhhCCcEEEEE-EeCCcceeecHHHHHHHHHcCCeE
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYE-VDGRDYHFVSSREQMEKDIQNHLFIEAG-QYNDNLYGTSVASVRDVAEKGKHC 127 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E-~dG~dY~FV~s~eef~~~i~~~~FiE~~-~~~gn~YGTs~~sV~~v~~~gk~~ 127 (225)
..+|+|+|++|||||+....-.+.-. ..|..+.++ +.+.+...+..+. . +. ......|..-...+...++.|..+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~-~~d~~r~~l~~~~-~-~~~~~r~~~~~~~~~~~~~~l~~g~~V 101 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL-DGDNIRFGLNKDL-G-FSEADRNENIRRIAEVAKLFADSNSIA 101 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE-CHHHHTTTTTTTC-C-SSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEE-CChHHhhhhcccc-C-CCHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 45899999999999921111000000 135557788 6666554432210 0 00 000001111112234556789999
Q ss_pred EEEcc------HHHHHHHHh---hc---cCC-eEEEEecCCHHHHHHHhccCCHHHHHHHHHHHH-----HHHHhhC--C
Q psy10228 128 ILDVS------GNAIKRLQV---AS---LYP-VAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSM-----KMEQEFG--E 187 (225)
Q Consensus 128 ildv~------~~gvk~L~~---~~---~~P-i~IFI~pps~~~L~~L~~R~seeei~~rl~~a~-----k~E~~~~--~ 187 (225)
|+|.. .+.++.+.. .+ -.| .+||+.+| .+++. +|... .+.++..... .+...|. .
T Consensus 102 I~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~-~e~~~---~R~~r-~~~~~~r~~~~~~~~~~~~~y~~~~ 176 (211)
T 1m7g_A 102 ITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVP-VEVAE---QRDPK-GLYKKAREGVIKEFTGISAPYEAPA 176 (211)
T ss_dssp EEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECC-HHHHH---TSCTT-CHHHHHHHTSSSSCBTTTBCCCCCS
T ss_pred EEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCC-HHHHH---HhhhH-HHHHHHHhcchhhhhhhhhhccCCC
Confidence 98842 111222221 11 134 67889875 45442 33210 0111110000 0000111 2
Q ss_pred CCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228 188 FFTAVVQGD--MPEDIYQKVKEVIQE 211 (225)
Q Consensus 188 ~fd~vI~Nd--dleea~~~lk~iI~~ 211 (225)
..+++|.++ ++++++++|...|..
T Consensus 177 ~~~~~IDt~~~s~eev~~~I~~~l~~ 202 (211)
T 1m7g_A 177 NPEVHVKNYELPVQDAVKQIIDYLDT 202 (211)
T ss_dssp SCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 347888765 699999999999975
No 97
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.66 E-value=0.00083 Score=56.39 Aligned_cols=152 Identities=9% Similarity=0.106 Sum_probs=76.2
Q ss_pred CccEEEEccCCCCCC-------------CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcE-----EEEEEeCCccee
Q psy10228 50 QEPFMLCYTQDDPTT-------------EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLF-----IEAGQYNDNLYG 111 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~-------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~F-----iE~~~~~gn~YG 111 (225)
+.+|++.|++||||+ ..+||-|..+.--| +.....+.+..+ .|.--|..+.+-
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~g---------~~ir~~l~~~~~~~~~~~~~llf~a~R~~ 75 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIG---------GLINEYLTDDSFQLSDQAIHLLFSANRWE 75 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHHH---------HHHHHHHHCTTSCCCHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChHH---------HHHHHHHHhcccCCCHHHHHHHHHHHHHH
Confidence 568999999999998 25666663211111 122222222210 010012222233
Q ss_pred ecHHHHHHHHHcCCeEEEEccH------HH--------HHHHHh---hccCC-eEEEE-ecCCHHHHHHHhcc---CCHH
Q psy10228 112 TSVASVRDVAEKGKHCILDVSG------NA--------IKRLQV---ASLYP-VAIFI-KPKSVESIMEMNKR---MTEE 169 (225)
Q Consensus 112 Ts~~sV~~v~~~gk~~ildv~~------~g--------vk~L~~---~~~~P-i~IFI-~pps~~~L~~L~~R---~see 169 (225)
..+.|...+++|+++|.|=.. +| +..+.. ....| .+||+ ..|--..++++.++ ....
T Consensus 76 -~~~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~dr~E~~ 154 (216)
T 3tmk_A 76 -IVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETV 154 (216)
T ss_dssp -THHHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCCTTCCH
T ss_pred -HHHHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCcccccHH
Confidence 345678888999999998422 11 122221 12346 78998 75432222223222 2223
Q ss_pred HHHHHHHHHHH-HHHh---hCCCCcEEEE--CCCHHHHHHHHHHHHHh
Q psy10228 170 QAKKMYDRSMK-MEQE---FGEFFTAVVQ--GDMPEDIYQKVKEVIQE 211 (225)
Q Consensus 170 ei~~rl~~a~k-~E~~---~~~~fd~vI~--Nddleea~~~lk~iI~~ 211 (225)
+..+++..+.. +-.. +.+.-..+|. +.++++..++|.++|..
T Consensus 155 ~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~ 202 (216)
T 3tmk_A 155 KFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEP 202 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45555555431 1111 1222334555 24899999998888775
No 98
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.64 E-value=0.00081 Score=54.58 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=36.1
Q ss_pred CeEEEEecCCHHHHHHHhccC-CHHHHHHHHHH----H-HHHHHhhCCCCcEE--EECC-CHHHHHHHHHHHHHh
Q psy10228 146 PVAIFIKPKSVESIMEMNKRM-TEEQAKKMYDR----S-MKMEQEFGEFFTAV--VQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 146 Pi~IFI~pps~~~L~~L~~R~-seeei~~rl~~----a-~k~E~~~~~~fd~v--I~Nd-dleea~~~lk~iI~~ 211 (225)
..+||+.+|....++++..|. +.+++..++.. . ......+....|.+ |.|+ ++++.++++.+++..
T Consensus 131 d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 131 NRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ 205 (207)
T ss_dssp SEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred CeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence 478999887544444565564 22222222221 1 01111223334544 6676 799999999998864
No 99
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.63 E-value=0.0056 Score=51.45 Aligned_cols=68 Identities=13% Similarity=0.222 Sum_probs=41.9
Q ss_pred CCeEEEEecCCHHHHHHHhcc------CCHHHHHHHHHHHHH--HHH---hhCCCCcEEE----ECC-CHHHHHHHHHHH
Q psy10228 145 YPVAIFIKPKSVESIMEMNKR------MTEEQAKKMYDRSMK--MEQ---EFGEFFTAVV----QGD-MPEDIYQKVKEV 208 (225)
Q Consensus 145 ~Pi~IFI~pps~~~L~~L~~R------~seeei~~rl~~a~k--~E~---~~~~~fd~vI----~Nd-dleea~~~lk~i 208 (225)
...+|||.++.-..++++..| .+.+++.+++..-.. .+. .+....|++| .|+ ++++++++|..+
T Consensus 151 ~d~vi~l~~~~e~~~~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~ 230 (252)
T 1uj2_A 151 FQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDI 230 (252)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHH
T ss_pred cCeeEEEeCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHH
Confidence 458899998754444454433 367777666654211 111 2235678888 554 688999999888
Q ss_pred HHhc
Q psy10228 209 IQEQ 212 (225)
Q Consensus 209 I~~~ 212 (225)
+...
T Consensus 231 l~~~ 234 (252)
T 1uj2_A 231 LNGG 234 (252)
T ss_dssp HHC-
T ss_pred Hccc
Confidence 8643
No 100
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.47 E-value=0.0071 Score=49.55 Aligned_cols=98 Identities=16% Similarity=0.283 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCeEEEEccH---------------HHHHHHHh---hccCC-eEEEEecCCHHHHHHHh--ccCCHHHHH
Q psy10228 114 VASVRDVAEKGKHCILDVSG---------------NAIKRLQV---ASLYP-VAIFIKPKSVESIMEMN--KRMTEEQAK 172 (225)
Q Consensus 114 ~~sV~~v~~~gk~~ildv~~---------------~gvk~L~~---~~~~P-i~IFI~pps~~~L~~L~--~R~seeei~ 172 (225)
...|...+++|+++|.|--. +-+..|.. ..+.| .+||+..|-...+++.. .|....+..
T Consensus 72 ~~~I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e~~ef~ 151 (197)
T 3hjn_A 72 VTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKREFL 151 (197)
T ss_dssp HHHHHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTCCHHHH
T ss_pred HHHHHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccccHHHH
Confidence 35577778899999988421 11222322 13456 78888876333333322 233334555
Q ss_pred HHHHHHH-HHHHhhCCCCcEEEEC-CCHHHHHHHHHHHHHhc
Q psy10228 173 KMYDRSM-KMEQEFGEFFTAVVQG-DMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 173 ~rl~~a~-k~E~~~~~~fd~vI~N-ddleea~~~lk~iI~~~ 212 (225)
+++..+. ++-..+.. --.+|.. .++++..++|.++|.+.
T Consensus 152 ~rv~~~y~~la~~~~~-~~~~IDa~~~~eeV~~~I~~~i~~r 192 (197)
T 3hjn_A 152 ERVREGYLVLAREHPE-RIVVLDGKRSIEEIHRDVVREVKRR 192 (197)
T ss_dssp HHHHHHHHHHHHHCTT-TEEEEETTSCHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhCCC-CEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 5555443 11112222 1234443 37999999999988753
No 101
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.47 E-value=0.0023 Score=52.52 Aligned_cols=76 Identities=16% Similarity=0.034 Sum_probs=43.1
Q ss_pred CCeEEEEccHHHHHHHHhhccCCeEEEEecCCHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHH
Q psy10228 124 GKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIY 202 (225)
Q Consensus 124 gk~~ildv~~~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~ 202 (225)
+..+++|+..- .. -........+|||.+|.-..++++ . ...+.. +-.......|++|.|+ +++++.
T Consensus 111 ~~~vv~d~pll-~e-~~~~~~~d~vi~v~a~~e~r~~Rl---i-----~~q~~~---~~~~~~~~AD~vI~n~~~~~~l~ 177 (192)
T 2grj_A 111 SGLIVIEAALL-KR-MGLDQLCDHVITVVASRETILKRN---R-----EADRRL---KFQEDIVPQGIVVANNSTLEDLE 177 (192)
T ss_dssp CEEEEEECTTT-TT-TTGGGGCSEEEEEECCHHHHHHHC---S-----SHHHHH---TTCTTCCCCSEEEECSSCHHHHH
T ss_pred CCEEEEEEece-ee-cChHHhCCEEEEEECCHHHHHHHH---H-----HhcCCc---hhhhHHhcCCEEEECCCCHHHHH
Confidence 55777775320 00 001134557899998743333223 1 101111 0012246789999988 799999
Q ss_pred HHHHHHHHhc
Q psy10228 203 QKVKEVIQEQ 212 (225)
Q Consensus 203 ~~lk~iI~~~ 212 (225)
.++..++...
T Consensus 178 ~~v~~~~~~l 187 (192)
T 2grj_A 178 KKVEEVMKLV 187 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 102
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.47 E-value=0.00015 Score=58.98 Aligned_cols=69 Identities=12% Similarity=0.111 Sum_probs=38.4
Q ss_pred ccEEEEccCCCCCC-----------------CcccCCCCCCCCC--Ccc-eEEecCHHHHHHhhhCCcEEEEEEeCCcce
Q psy10228 51 EPFMLCYTQDDPTT-----------------EDTTRARREYEVD--GRD-YHFVSSREQMEKDIQNHLFIEAGQYNDNLY 110 (225)
Q Consensus 51 ~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~d--G~d-Y~FV~s~eef~~~i~~~~FiE~~~~~gn~Y 110 (225)
..++|+|+|||||| ..+++.++..|+| |.| |+|+ . .-+.+.... ...+|..+.+ .|
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~~id~~g~Ds~~~~-~-~G~~~v~i~-~~~~~~~~~~-~~ 82 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELR-K-AGAAQTIVA-SQQRWALMTE-TP 82 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC------------CHH-H-HTCSEEEEE-CSSEEEEEEE-CS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCccccCCCCCceEEEE-e-CCcceeecc-cchhheeeee-cc
Confidence 47899999999998 5567778777776 677 6665 2 222111101 1234555443 58
Q ss_pred eecHHHHHHHHHc
Q psy10228 111 GTSVASVRDVAEK 123 (225)
Q Consensus 111 GTs~~sV~~v~~~ 123 (225)
|++..++++++..
T Consensus 83 ~~~~~~L~~ll~r 95 (174)
T 1np6_A 83 DEEELDLQFLASR 95 (174)
T ss_dssp SSCCCCHHHHHHH
T ss_pred CCchhhHHHHHHh
Confidence 9988889888855
No 103
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.40 E-value=0.0019 Score=50.46 Aligned_cols=62 Identities=8% Similarity=0.263 Sum_probs=31.8
Q ss_pred CeEEEEecCCHHHHHH-HhccC-----C-----HHHHHHHHHHHHHHHHhhCCCCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228 146 PVAIFIKPKSVESIME-MNKRM-----T-----EEQAKKMYDRSMKMEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQE 211 (225)
Q Consensus 146 Pi~IFI~pps~~~L~~-L~~R~-----s-----eeei~~rl~~a~k~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~~ 211 (225)
..+||+..| .+.+.+ +..|. + .+.+...+... +..|....|++|.|+ ++++++++|..++..
T Consensus 98 ~~~i~l~~~-~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r---~~~~~~~a~~~id~~~~~~~~~~~~i~~~l~~ 172 (173)
T 1kag_A 98 GVVVYLETT-IEKQLARTQRDKKRPLLHVETPPREVLEALANER---NPLYEEIADVTIRTDDQSAKVVANQIIHMLES 172 (173)
T ss_dssp SEEEECCCC-HHHHHSCC------CCSSSSCCCHHHHHHHHHHH---HHHHHHHCSEEC-----CHHHHHHHHHHHHC-
T ss_pred CEEEEEeCC-HHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHH---HHHHHhhCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 367888875 455543 43331 1 23333333221 112333458888876 689999999888753
No 104
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.36 E-value=0.039 Score=45.51 Aligned_cols=45 Identities=4% Similarity=0.160 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHH----HHhhC-CCCcEEEECC-CHHHHHHHHHHHHHhc
Q psy10228 168 EEQAKKMYDRSMKM----EQEFG-EFFTAVVQGD-MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 168 eeei~~rl~~a~k~----E~~~~-~~fd~vI~Nd-dleea~~~lk~iI~~~ 212 (225)
++.+++|+....+. ...|. .....+|..+ ++++.+++|..+|...
T Consensus 181 ~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~ 231 (233)
T 1ak2_A 181 KKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA 231 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence 45677777654321 01222 1234556554 7999999999998754
No 105
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.30 E-value=0.0026 Score=54.39 Aligned_cols=122 Identities=9% Similarity=0.092 Sum_probs=66.7
Q ss_pred ccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEE-EEeCC---cce-eecHHHHHHHH---H
Q psy10228 51 EPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEA-GQYND---NLY-GTSVASVRDVA---E 122 (225)
Q Consensus 51 ~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~-~~~~g---n~Y-GTs~~sV~~v~---~ 122 (225)
..|+|+|++|||||+...+-.. +. ..|.++ +.+.+...+....- .+ ..|.. ..+ ....+.+...+ .
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~--~~--~~~~~i-~~D~~r~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA--KN--PGFYNI-NRDDYRQSIMAHEE-RDEYKYTKKKEGIVTGMQFDTAKSILYGGD 76 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH--HS--TTEEEE-CHHHHHHHHTTSCC-CC---CCHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred eEEEEECCCCCCHHHHHHHHHH--hC--CCcEEe-cccHHHHHhccCCc-ccccccchhhhhHHHHHHHHHHHHHHhhcc
Confidence 4689999999999933222111 00 146788 77887766543110 00 01110 000 11223455666 7
Q ss_pred cCCeEEEEccH---HHHHHHHh---hccCC-eEEEEecCCHHHHHH-HhccC----CHHHHHHHHHHHH
Q psy10228 123 KGKHCILDVSG---NAIKRLQV---ASLYP-VAIFIKPKSVESIME-MNKRM----TEEQAKKMYDRSM 179 (225)
Q Consensus 123 ~gk~~ildv~~---~gvk~L~~---~~~~P-i~IFI~pps~~~L~~-L~~R~----seeei~~rl~~a~ 179 (225)
.|..+|+|... .-...+.. ..-+| .+|||.+| .+.+.+ +..|. +++.+++++++..
T Consensus 77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~e~~~~R~~~R~~~~~~~e~i~~~~~~~~ 144 (301)
T 1ltq_A 77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVKRNSKRGTKAVPIDVLRSMYKSMR 144 (301)
T ss_dssp TCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCC-HHHHHHHHHHCGGGCCCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECC-HHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 89999998643 11222321 11134 68899885 565554 76665 4778888887763
No 106
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.10 E-value=0.031 Score=47.60 Aligned_cols=151 Identities=11% Similarity=0.111 Sum_probs=69.5
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEE-EEEEeCC-cceee-cHHHHHHHHHcCCe
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFI-EAGQYND-NLYGT-SVASVRDVAEKGKH 126 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~Fi-E~~~~~g-n~YGT-s~~sV~~v~~~gk~ 126 (225)
...|+|+|++|||||+..-.-.+ . -.|.|+ +-+.+-.....|.-+ +...-.| ..+-. -.+.+.++......
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~---~--lg~~~~-d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~ 121 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR---S--LGYTFF-DCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQ 121 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH---H--HTCEEE-EHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHH---h--cCCcEE-eCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCC
Confidence 45899999999999921111000 0 135666 444443332211110 0000011 11111 11234445544123
Q ss_pred EEEEc------cHHHHHHHHhhccCCeEEEEecCCHHHHH-HHhc-----cC--CH-------HHHHHHHHHHHHH-HHh
Q psy10228 127 CILDV------SGNAIKRLQVASLYPVAIFIKPKSVESIM-EMNK-----RM--TE-------EQAKKMYDRSMKM-EQE 184 (225)
Q Consensus 127 ~ildv------~~~gvk~L~~~~~~Pi~IFI~pps~~~L~-~L~~-----R~--se-------eei~~rl~~a~k~-E~~ 184 (225)
+|+.. .+.....|+ ...+|||..|. +++. ++.+ |. .. ++..+++....+. +.-
T Consensus 122 ~Via~GgG~v~~~~~~~~l~----~~~vV~L~a~~-e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~l 196 (250)
T 3nwj_A 122 VVVSTGGGAVIRPINWKYMH----KGISIWLDVPL-EALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEA 196 (250)
T ss_dssp EEEECCGGGGGSHHHHHHHT----TSEEEEEECCH-HHHHHHHHC----------------CHHHHHHHHHHHHHHHHHH
T ss_pred cEEecCCCeecCHHHHHHHh----CCcEEEEECCH-HHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHH
Confidence 44432 233333332 25899999864 5554 4654 22 11 1112233332211 222
Q ss_pred hCCCCcEEE------------E--CCCHHHHHHHHHHHHHhc
Q psy10228 185 FGEFFTAVV------------Q--GDMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 185 ~~~~fd~vI------------~--Nddleea~~~lk~iI~~~ 212 (225)
|. ..|++| . +-++++++++|.+.|...
T Consensus 197 Y~-~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~ 237 (250)
T 3nwj_A 197 YT-KASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSY 237 (250)
T ss_dssp HT-TSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHH
T ss_pred Hh-hCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 43 488888 2 236899999998888754
No 107
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.08 E-value=0.01 Score=48.44 Aligned_cols=14 Identities=7% Similarity=-0.102 Sum_probs=12.9
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..|+|+|++|||||
T Consensus 5 ~~I~l~G~~GsGKs 18 (220)
T 1aky_A 5 IRMVLIGPPGAGKG 18 (220)
T ss_dssp CEEEEECCTTSSHH
T ss_pred cEEEEECCCCCCHH
Confidence 47999999999999
No 108
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.04 E-value=0.00042 Score=55.16 Aligned_cols=15 Identities=7% Similarity=0.053 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+..|+|+||+|||||
T Consensus 9 g~~i~l~G~~GsGKS 23 (191)
T 1zp6_A 9 GNILLLSGHPGSGKS 23 (191)
T ss_dssp TEEEEEEECTTSCHH
T ss_pred CeEEEEECCCCCCHH
Confidence 468999999999999
No 109
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.95 E-value=0.0027 Score=50.08 Aligned_cols=62 Identities=21% Similarity=0.396 Sum_probs=36.3
Q ss_pred CeEEEEecCCHHHHHH-Hhcc-----CC---HHHHHHHHHHHHHHHHhhCCCCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228 146 PVAIFIKPKSVESIME-MNKR-----MT---EEQAKKMYDRSMKMEQEFGEFFTAVVQGD--MPEDIYQKVKEVIQE 211 (225)
Q Consensus 146 Pi~IFI~pps~~~L~~-L~~R-----~s---eeei~~rl~~a~k~E~~~~~~fd~vI~Nd--dleea~~~lk~iI~~ 211 (225)
..+|||.+| .+.+.+ +..| .. .+.+++.+... +..|....+.+|.++ +++++++.|...+..
T Consensus 94 ~~~i~l~~~-~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r---~~~y~~~~~~~Idt~~~~~eev~~~I~~~l~~ 166 (175)
T 1via_A 94 GFCIYLKAD-FEYLKKRLDKDEISKRPLFYDEIKAKKLYNER---LSKYEQKANFILNIENKNIDELLSEIKKVIKE 166 (175)
T ss_dssp CEEEEEECC-HHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHH---HHHHHHHCSEEEECTTCCHHHHHHHHHHHHC-
T ss_pred CEEEEEeCC-HHHHHHHHhcccCCCCCCcccHHHHHHHHHHH---HHHHHhcCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 478999875 455543 4333 11 23344333322 122323468888876 699999999988764
No 110
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.88 E-value=0.019 Score=48.02 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=57.4
Q ss_pred CCeEEEEccH----HHHHHHHhhccCCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-
Q psy10228 124 GKHCILDVSG----NAIKRLQVASLYPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD- 196 (225)
Q Consensus 124 gk~~ildv~~----~gvk~L~~~~~~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd- 196 (225)
+..|++|+-. .|.. .+.-.+|+|.+|.-..++++.+| .+++++.+|+..-.-.+ +.....|+||.|+
T Consensus 112 ~~~vv~d~pLL~E~~~~~-----~~~D~vi~V~ap~e~r~~Rl~~Rdg~s~eea~~ri~~Q~~~e-ek~~~AD~VIdN~~ 185 (210)
T 4i1u_A 112 GPYVIFVVPLLVESRNWK-----ARCDRVLVVDCPVDTQIARVMQRNGFTREQVEAIIARQATRE-ARLAAADDVIVNDA 185 (210)
T ss_dssp SSSEEEECTTCTTCHHHH-----HHCSEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHSCCHH-HHHHTCSEEEECSS
T ss_pred CCEEEEEEecccccCCcc-----ccCCeEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHHcCChH-HHHHhCCEEEECCC
Confidence 4578888742 2321 23557899998866666676555 58899988876532112 2235789999998
Q ss_pred -CHHHHHHHHHHHHHhc
Q psy10228 197 -MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 197 -dleea~~~lk~iI~~~ 212 (225)
+++++..++..++...
T Consensus 186 gsle~l~~qV~~l~~~~ 202 (210)
T 4i1u_A 186 ATPDALAVQVDALHQRY 202 (210)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 7999999999988754
No 111
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.52 E-value=0.0011 Score=64.06 Aligned_cols=158 Identities=15% Similarity=0.167 Sum_probs=73.2
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCC-cceeecHHHHHHHHHcCCeEE
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYND-NLYGTSVASVRDVAEKGKHCI 128 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~g-n~YGTs~~sV~~v~~~gk~~i 128 (225)
...|+|+|+||||||+.--.-.+.-...|..++.+ +.+.+...+..+.- +..-.+ ..+-.-.+-++..++.|.+++
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l-DgD~iR~~L~~~~~--fs~~dree~~r~i~eva~~~l~~G~iVI 128 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL-DGDNIRQGLNKNLG--FSPEDREENVRRIAEVAKLFADAGLVCI 128 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE-SHHHHTTTTTTTCC--SSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe-chHHhhhccCcccc--CChhhhHHHHHHHHHHHHHHHhCCCEEE
Confidence 45799999999999921111000000125666666 55554433222110 000000 000000111233457798888
Q ss_pred EEc-cH-----HHHHHHHhhccCC-eEEEEecCCHHHHHH-HhccCCHHHHHH-HHHHHHHHHHhhC--CCCcEEEECC-
Q psy10228 129 LDV-SG-----NAIKRLQVASLYP-VAIFIKPKSVESIME-MNKRMTEEQAKK-MYDRSMKMEQEFG--EFFTAVVQGD- 196 (225)
Q Consensus 129 ldv-~~-----~gvk~L~~~~~~P-i~IFI~pps~~~L~~-L~~R~seeei~~-rl~~a~k~E~~~~--~~fd~vI~Nd- 196 (225)
.+. .+ +.++.+....-.| ++|||.+| .+++.+ +.+++-. ..+. .+.........|. ...|.+|.++
T Consensus 129 ~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap-~Evl~~Rl~r~ly~-~aR~~~~~~~~~~~~~Ye~p~~~dlvIDts~ 206 (630)
T 1x6v_B 129 TSFISPYTQDRNNARQIHEGASLPFFEVFVDAP-LHVCEQRDVKGLYK-KARAGEIKGFTGIDSEYEKPEAPELVLKTDS 206 (630)
T ss_dssp EECCCCCHHHHHHHHHHHHTTTCCEEEEEEECC-HHHHHHHCTTSHHH-HHTTC----CBTTTBCCCCCSSCSEEEETTS
T ss_pred EeCchhhHHHHHHHHHHHHhCCCCeEEEEEECC-HHHHHHHhccccch-hhhhhhHHHHHHhhhhhcccCCCcEEEECCC
Confidence 872 22 2233332222234 68999886 455543 3322100 0000 0000000111122 3467888775
Q ss_pred -CHHHHHHHHHHHHHhc
Q psy10228 197 -MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 197 -dleea~~~lk~iI~~~ 212 (225)
++++++++|.+.|...
T Consensus 207 ~s~eevv~~Il~~L~~~ 223 (630)
T 1x6v_B 207 CDVNDCVQQVVELLQER 223 (630)
T ss_dssp SCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 7999999999999764
No 112
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.26 E-value=0.0006 Score=57.68 Aligned_cols=104 Identities=10% Similarity=0.049 Sum_probs=49.8
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhC--------CcEEEEEEeCCcceeec-HHHHHHH
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQN--------HLFIEAGQYNDNLYGTS-VASVRDV 120 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~--------~~FiE~~~~~gn~YGTs-~~sV~~v 120 (225)
...|+|+||+|||||+..-.-.+ .-|..++|+ +.+.+...+.. |.-+ ..+..+.+|.. ...++..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~---~l~~~~~~~-~~D~~r~~~~~~~~i~~~~g~~~--~~~~~~~~~~~~~~~~~~~ 105 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK---EFQGNIVII-DGDSFRSQHPHYLELQQEYGKDS--VEYTKDFAGKMVESLVTKL 105 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH---HTTTCCEEE-CGGGGGTTSTTHHHHHTTCSSTT--HHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH---hcCCCcEEE-ecHHHHHhchhHHHHHHHcCchH--HHHhhHHHHHHHHHHHHHH
Confidence 35799999999999922111100 011246777 66666443211 1000 00000112222 2334455
Q ss_pred HHcCCeEEEEccHHHH-------HHHHhhccCCeEEEEecCCHHHHH
Q psy10228 121 AEKGKHCILDVSGNAI-------KRLQVASLYPVAIFIKPKSVESIM 160 (225)
Q Consensus 121 ~~~gk~~ildv~~~gv-------k~L~~~~~~Pi~IFI~pps~~~L~ 160 (225)
++.|..+|+|..+.+. +.++..+.....||+.+| .+.+.
T Consensus 106 ~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~-~e~~~ 151 (253)
T 2p5t_B 106 SSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATK-PELSY 151 (253)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCC-HHHHH
T ss_pred HhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCC-HHHHH
Confidence 6778889999654322 223333333345677664 45443
No 113
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.70 E-value=1.1 Score=37.58 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=36.3
Q ss_pred CeEEEEecCCHHHHHH----Hhcc---CCHHHHHHHHHHHHHHHHh--hCC--CCc--EEEECC--CHHHHHHHHHHHHH
Q psy10228 146 PVAIFIKPKSVESIME----MNKR---MTEEQAKKMYDRSMKMEQE--FGE--FFT--AVVQGD--MPEDIYQKVKEVIQ 210 (225)
Q Consensus 146 Pi~IFI~pps~~~L~~----L~~R---~seeei~~rl~~a~k~E~~--~~~--~fd--~vI~Nd--dleea~~~lk~iI~ 210 (225)
++-|||.++--...++ |..+ .+.+++.+.+..-.+.+.. +++ .++ .+|.+. +++++++.|..++.
T Consensus 147 ~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~iee~v~~I~~~i~ 226 (233)
T 3r20_A 147 DVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHLLDLVT 226 (233)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHHHHHHHHHHHC-
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHHHHHHHHHHHHH
Confidence 4889999964332333 2222 2566665544443333332 222 343 555555 68999999999887
Q ss_pred hcc
Q psy10228 211 EQS 213 (225)
Q Consensus 211 ~~~ 213 (225)
...
T Consensus 227 ~~~ 229 (233)
T 3r20_A 227 AQA 229 (233)
T ss_dssp ---
T ss_pred Hhh
Confidence 543
No 114
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.84 E-value=0.046 Score=51.35 Aligned_cols=47 Identities=6% Similarity=-0.009 Sum_probs=26.6
Q ss_pred CCccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhC
Q psy10228 49 DQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQN 96 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~ 96 (225)
....|+++|.+|||||+..-+-.+.-...|.+...+ +.+++......
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~-s~D~~r~~~~~ 80 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVF-NVGEYRREAVK 80 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE-EHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEe-cccHHHHHhcc
Confidence 346899999999999922111111111235555555 56666655543
No 115
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.73 E-value=0.015 Score=55.36 Aligned_cols=143 Identities=10% Similarity=0.089 Sum_probs=70.9
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCC-cceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecH----------HHHH
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDG-RDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSV----------ASVR 118 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG-~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~----------~sV~ 118 (225)
...|+|+|+||||||+.--.--+.-...| ..++++ +-+.+...+.. +..| +.. .-++
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~l-D~D~ir~~l~~----------~~~f-~~~er~~~i~ri~~v~~ 463 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLL-LGDTVRHELSS----------ELGF-TREDRHTNIQRIAFVAT 463 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEE-EHHHHHHHTCT----------TCCC-SHHHHHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEE-CcHHHHHHhcc----------ccCC-ChhHHHHHHHHHHHHHH
Confidence 35789999999999821111000000113 667777 66666654321 1111 111 1344
Q ss_pred HHHHcCCeEEEEcc-H-H----HHHHHHhhccCC-eEEEEecCCHHHHHHHhccCCHHHHHHHHHHHHHHHH------hh
Q psy10228 119 DVAEKGKHCILDVS-G-N----AIKRLQVASLYP-VAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQ------EF 185 (225)
Q Consensus 119 ~v~~~gk~~ildv~-~-~----gvk~L~~~~~~P-i~IFI~pps~~~L~~L~~R~seeei~~rl~~a~k~E~------~~ 185 (225)
..++.|..+|.+.- + + .++.+.. ..-+ +.|||.+| .+++.+-..+.--.. .++.+++. .|
T Consensus 464 ~~~~~g~~VI~~~is~~~~~R~~~r~l~~-~~g~~~~V~Lda~-~ev~~~R~~r~l~~~-----~~~~~i~~~~~~r~~~ 536 (573)
T 1m8p_A 464 ELTRAGAAVIAAPIAPYEESRKFARDAVS-QAGSFFLVHVATP-LEHCEQSDKRGIYAA-----ARRGEIKGFTGVDDPY 536 (573)
T ss_dssp HHHHTTCEEEEECCCCCHHHHHHHHHHHH-TTSEEEEEEECCC-HHHHHHHCSSCHHHH-----HHTTSSSSCBTTTBCC
T ss_pred HHHhCCCEEEEEcCCCcHHHHHHHHHHHH-hcCCeEEEEEeCC-HHHHHHHhcccchhh-----hhHHHHHHHHhccccc
Confidence 55677988888742 2 1 2222211 1112 78999875 455543111210000 01101110 11
Q ss_pred C--CCCcEEEECC--CHHHHHHHHHHHHHh
Q psy10228 186 G--EFFTAVVQGD--MPEDIYQKVKEVIQE 211 (225)
Q Consensus 186 ~--~~fd~vI~Nd--dleea~~~lk~iI~~ 211 (225)
. ...|.+|.++ ++++++++|...|..
T Consensus 537 ~~p~~~dl~IDts~~s~eevv~~Il~~l~~ 566 (573)
T 1m8p_A 537 ETPEKADLVVDFSKQSVRSIVHEIILVLES 566 (573)
T ss_dssp CCCSSCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred cccCCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 1 2346777655 699999999999875
No 116
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.98 E-value=0.79 Score=36.07 Aligned_cols=65 Identities=8% Similarity=0.026 Sum_probs=41.5
Q ss_pred CeEEEEecCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHhh-CCCCc-EEEECC--CHHHHHHHHHHHHH
Q psy10228 146 PVAIFIKPKSVESIMEMNKRM--TEEQAKKMYDRSMKMEQEF-GEFFT-AVVQGD--MPEDIYQKVKEVIQ 210 (225)
Q Consensus 146 Pi~IFI~pps~~~L~~L~~R~--seeei~~rl~~a~k~E~~~-~~~fd-~vI~Nd--dleea~~~lk~iI~ 210 (225)
..+|||.+|.-..++++..|. +.+++.+++..-......+ ....| ++|.|+ ++++++++|.+++.
T Consensus 137 d~~i~l~a~~e~~~~R~~~r~~~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 137 AHKFYLTASPEVRAWRRARERPQAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp SEEEEEECCHHHHHHHHHHTSSSCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred cEEEEEECCHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 378999987544455565554 5667766665421111111 34566 888887 69999999998875
No 117
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.95 E-value=0.06 Score=43.37 Aligned_cols=34 Identities=12% Similarity=-0.031 Sum_probs=16.4
Q ss_pred ccEEEEccCCCCCC-----------------CcccCCCCCCCCC---CcceEEe
Q psy10228 51 EPFMLCYTQDDPTT-----------------EDTTRARREYEVD---GRDYHFV 84 (225)
Q Consensus 51 ~~ivl~GpsgsGK~-----------------s~TTRp~R~~E~d---G~dY~FV 84 (225)
..+.|+|+|||||| ...+..|...++| |+|++.+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~~diD~~~g~D~~r~ 58 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRH 58 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCCcccccCCChhHHHH
Confidence 36889999999999 4455666656654 7777655
No 118
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.54 E-value=0.063 Score=42.31 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=66.3
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHH----HHHHHHcCC
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVAS----VRDVAEKGK 125 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~s----V~~v~~~gk 125 (225)
++.++|+||||||||+.--. -..|.. .+ +.+.+...+.... +.....|+..+. ....+..|.
T Consensus 9 gei~~l~G~nGsGKSTl~~~-----~~~~~~--~~-~~d~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~ 74 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK-----HFKPTE--VI-SSDFCRGLMSDDE------NDQTVTGAAFDVLHYIVSKRLQLGK 74 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH-----HSCGGG--EE-EHHHHHHHHCSST------TCGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEECCCCCCHHHHHHH-----HccCCe--EE-ccHHHHHHhcCcc------cchhhHHHHHHHHHHHHHHHHhCCC
Confidence 56899999999999921110 012322 24 4555544433221 111122332322 334456677
Q ss_pred eEEEEc---cHHHHHH-HHhh---ccCCeEEEEecCCHHHHHH-HhccC----CHHHHHHHHHHHHHHHHhh-CCCCcEE
Q psy10228 126 HCILDV---SGNAIKR-LQVA---SLYPVAIFIKPKSVESIME-MNKRM----TEEQAKKMYDRSMKMEQEF-GEFFTAV 192 (225)
Q Consensus 126 ~~ildv---~~~gvk~-L~~~---~~~Pi~IFI~pps~~~L~~-L~~R~----seeei~~rl~~a~k~E~~~-~~~fd~v 192 (225)
..++|- ...|-++ +..+ ...|.+++++-|. ..|.. ...|. .++.+........++=... .+.++.+
T Consensus 75 ~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt-~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi 153 (171)
T 4gp7_A 75 LTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPE-KVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYV 153 (171)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCH-HHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEE
T ss_pred eEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCH-HHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEE
Confidence 777763 2233222 2222 2357788888775 44443 44443 3444432222221110001 1357888
Q ss_pred EECCCHHHHH
Q psy10228 193 VQGDMPEDIY 202 (225)
Q Consensus 193 I~Nddleea~ 202 (225)
++-+|++++.
T Consensus 154 ~vtH~~~~~~ 163 (171)
T 4gp7_A 154 YILNSPEEVE 163 (171)
T ss_dssp EEECSHHHHH
T ss_pred EEeCCHHHhh
Confidence 8888888764
No 119
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.18 E-value=0.19 Score=40.51 Aligned_cols=66 Identities=11% Similarity=0.163 Sum_probs=42.1
Q ss_pred CCeEEEEecCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228 145 YPVAIFIKPKSVESIMEMNKR--MTEEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 145 ~Pi~IFI~pps~~~L~~L~~R--~seeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~ 211 (225)
...+|||.+|.-..++++..| .+.+++.+++...... ..+...+|++|.|+ ++++++++|.+++..
T Consensus 126 ~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~-~~~~~~ad~vId~~~~~~~~~~~I~~~l~~ 194 (218)
T 1vht_A 126 ANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATR-EARLAVADDVIDNNGAPDAIASDVARLHAH 194 (218)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHTCCHHHHHHHHHHSCCH-HHHHHHCSEEEECSSCTTSHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhcCCh-HHHHHhCCEEEECCCCHHHHHHHHHHHHHH
Confidence 348899998643333446555 4677777776652111 12223468899887 688888888888764
No 120
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.25 E-value=0.11 Score=47.31 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=23.3
Q ss_pred ccEEEEccCCCCCC-----------------CcccCCCCCC--CCCCcceEEec
Q psy10228 51 EPFMLCYTQDDPTT-----------------EDTTRARREY--EVDGRDYHFVS 85 (225)
Q Consensus 51 ~~ivl~GpsgsGK~-----------------s~TTRp~R~~--E~dG~dY~FV~ 85 (225)
.-++|+|++|+||| +.|||.+..+ +.+|.++.+++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~D 234 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVD 234 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESS
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEE
Confidence 46899999999999 6789988776 45788888873
No 121
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=89.24 E-value=0.14 Score=41.34 Aligned_cols=52 Identities=8% Similarity=-0.052 Sum_probs=31.9
Q ss_pred ccCCeEEEEecCCHHHHHHHhcc----C-CHHHHHHHHHHHHHH----HHhhCCCCcEEEE
Q psy10228 143 SLYPVAIFIKPKSVESIMEMNKR----M-TEEQAKKMYDRSMKM----EQEFGEFFTAVVQ 194 (225)
Q Consensus 143 ~~~Pi~IFI~pps~~~L~~L~~R----~-seeei~~rl~~a~k~----E~~~~~~fd~vI~ 194 (225)
...-..|||..|....++++.+| + +.+++..++.....- ........|+||.
T Consensus 146 ~~~d~~i~vd~~~~~~~~R~~~R~~~~g~t~~~~~~~~~~~~~~~~~~i~~~~~~aD~vi~ 206 (208)
T 3c8u_A 146 AIWDVSIRLEVPMADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADLTWP 206 (208)
T ss_dssp GTCSEEEEECCCHHHHHHHHHHHHHHTTCCHHHHHHHHHTHHHHHHHHHHTTBCCCSEEEC
T ss_pred HhcCEEEEEeCCHHHHHHHHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHhCCCCCCEEee
Confidence 34557899998865545554333 3 777887777643222 1233567888774
No 122
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=89.03 E-value=0.11 Score=41.63 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=18.6
Q ss_pred CcEEEECC---CHHHHHHHHHHHHHhc
Q psy10228 189 FTAVVQGD---MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 189 fd~vI~Nd---dleea~~~lk~iI~~~ 212 (225)
.+.+|..+ ++++++++|...|...
T Consensus 169 ~~~~idt~~~~~~~e~v~~i~~~l~~~ 195 (200)
T 3uie_A 169 CEISLGREGGTSPIEMAEKVVGYLDNK 195 (200)
T ss_dssp CSEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCHHHHHHHHHHHHHHc
Confidence 46677643 7899999999998764
No 123
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.74 E-value=0.039 Score=45.24 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=35.5
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA 121 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~ 121 (225)
..=++|+|+||+|||+.+..-.+. | |.+| + .+.+.-...++.++|++.+.++..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r----G--~~lv-a----------DD~v~i~~~~~~l~g~~p~~l~~~i 70 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR----G--HQLV-C----------DDVIDLKQENNQLIGSCPSVANGYI 70 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT----T--CEEE-E----------SSEEEEEESSSCEEEECCTTTTTEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc----C--CeEe-c----------CCEEEEEEeCCEEEEeCchHhhhhe
Confidence 456899999999999544433321 2 4566 3 3566666677778888766544433
No 124
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.55 E-value=0.2 Score=41.87 Aligned_cols=17 Identities=6% Similarity=-0.015 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||||||||
T Consensus 29 ~~Ge~~~iiG~nGsGKS 45 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKS 45 (235)
T ss_dssp CTTCEEEEECSTTSSHH
T ss_pred cCCCEEEEECCCCCcHH
Confidence 34678999999999999
No 125
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=85.46 E-value=0.21 Score=39.91 Aligned_cols=68 Identities=15% Similarity=0.210 Sum_probs=39.0
Q ss_pred ccCCeEEEEecCCHHHHHH-Hh----ccC-CHHHHHHHHH-HHHHHH----HhhCCCCcEEEECC-C----HHHHHHHHH
Q psy10228 143 SLYPVAIFIKPKSVESIME-MN----KRM-TEEQAKKMYD-RSMKME----QEFGEFFTAVVQGD-M----PEDIYQKVK 206 (225)
Q Consensus 143 ~~~Pi~IFI~pps~~~L~~-L~----~R~-seeei~~rl~-~a~k~E----~~~~~~fd~vI~Nd-d----leea~~~lk 206 (225)
.+.-.+|||.++....+.+ +. .++ +...+..++. +..... ..+....|+||.|+ + ++.+..+|.
T Consensus 123 ~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~~~~~~~~~~~~~~i~ 202 (211)
T 3asz_A 123 DLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGGQNPVALEMLAAKAL 202 (211)
T ss_dssp TTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEESTTSCHHHHHHHHHHHT
T ss_pred HhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCCCcchHHHHHHHHHHH
Confidence 4556889999987666665 32 223 4444433322 221111 12335789999987 4 666666666
Q ss_pred HHHH
Q psy10228 207 EVIQ 210 (225)
Q Consensus 207 ~iI~ 210 (225)
.++.
T Consensus 203 ~~~~ 206 (211)
T 3asz_A 203 ARLA 206 (211)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 126
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=85.33 E-value=0.38 Score=37.20 Aligned_cols=16 Identities=0% Similarity=-0.074 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
..+.++|+||+|+|||
T Consensus 35 ~g~~~~l~G~~G~GKT 50 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKS 50 (149)
T ss_dssp CCSEEEEESSSTTTTC
T ss_pred CCCEEEEECCCCCCHH
Confidence 4568999999999999
No 127
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=85.09 E-value=0.077 Score=46.96 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=35.6
Q ss_pred CccEEEEccCCCCCCCcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHH
Q psy10228 50 QEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVA 121 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~ 121 (225)
+.=++|+|+||+|||+++..-.+. | |.+| + ++.+.-...+|..||++.+.++..+
T Consensus 147 g~gvli~G~sG~GKStlal~l~~~----G--~~lv-~----------DD~v~i~~~~~~l~g~~p~~l~~~i 201 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLINK----N--HLFV-G----------DDAIEIYRLGNRLFGRAQEVAKKFM 201 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTT----T--CEEE-E----------EEEEEEEEETTEEEEEECTTTTTEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc----C--CEEE-e----------CCEEEEEEeCCeEEEeCchHhcCce
Confidence 456899999999999555443322 2 4566 3 3466666667778888766554433
No 128
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=84.92 E-value=0.28 Score=39.32 Aligned_cols=15 Identities=13% Similarity=-0.179 Sum_probs=13.9
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
.+.+.|+||||||||
T Consensus 25 G~~~~l~G~nGsGKS 39 (231)
T 4a74_A 25 QAITEVFGEFGSGKT 39 (231)
T ss_dssp SEEEEEEESTTSSHH
T ss_pred CcEEEEECCCCCCHH
Confidence 568999999999999
No 129
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=84.39 E-value=0.24 Score=42.09 Aligned_cols=16 Identities=0% Similarity=-0.035 Sum_probs=14.2
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.+..++|+||||||||
T Consensus 24 ~g~~v~i~Gp~GsGKS 39 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKS 39 (261)
T ss_dssp SSEEEEEECSTTCSHH
T ss_pred CCCEEEEECCCCccHH
Confidence 3568999999999999
No 130
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=84.28 E-value=0.25 Score=39.84 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=36.1
Q ss_pred CCeEEEEecCCHHHHHH----HhccC---CHHHHHHHHHH----HHHHHHh-hCCCC-cEEEECC--CHHHHHHHHHHHH
Q psy10228 145 YPVAIFIKPKSVESIME----MNKRM---TEEQAKKMYDR----SMKMEQE-FGEFF-TAVVQGD--MPEDIYQKVKEVI 209 (225)
Q Consensus 145 ~Pi~IFI~pps~~~L~~----L~~R~---seeei~~rl~~----a~k~E~~-~~~~f-d~vI~Nd--dleea~~~lk~iI 209 (225)
..++||+.+|.-..+++ +..|+ +.+++.+.+.. ....+.. ....+ +++|.|+ ++++++++|.+++
T Consensus 141 ~d~~i~l~~~~e~~~~R~~~~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~~~~~~ev~~~I~~~l 220 (227)
T 1cke_A 141 APVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYA 220 (227)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCCTTCEEEETTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 34889999976444444 22444 34444333332 1110111 11222 2777777 6999999999988
Q ss_pred Hh
Q psy10228 210 QE 211 (225)
Q Consensus 210 ~~ 211 (225)
..
T Consensus 221 ~~ 222 (227)
T 1cke_A 221 RQ 222 (227)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 131
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=83.71 E-value=0.29 Score=39.70 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.+..++|+||+|||||
T Consensus 29 ~G~~~~l~GpnGsGKS 44 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKT 44 (251)
T ss_dssp TTCEEEEECCTTSSHH
T ss_pred CCcEEEEEeCCCCCHH
Confidence 3579999999999999
No 132
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=83.35 E-value=0.31 Score=40.33 Aligned_cols=16 Identities=6% Similarity=-0.058 Sum_probs=14.2
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||||||||
T Consensus 29 ~Ge~~~iiG~nGsGKS 44 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKS 44 (224)
T ss_dssp TTCEEEEEECTTSCHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3568999999999999
No 133
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=83.32 E-value=0.3 Score=40.38 Aligned_cols=15 Identities=0% Similarity=-0.237 Sum_probs=13.6
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...|+|+||+|||||
T Consensus 27 ~~~i~l~G~~GsGKS 41 (246)
T 2bbw_A 27 LLRAVILGPPGSGKG 41 (246)
T ss_dssp CCEEEEECCTTSSHH
T ss_pred CcEEEEECCCCCCHH
Confidence 358999999999999
No 134
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=83.09 E-value=0.5 Score=38.76 Aligned_cols=27 Identities=11% Similarity=-0.086 Sum_probs=20.1
Q ss_pred CccEEEEccCCCCCC------CcccCCCCCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT------EDTTRARREYEVDG 78 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~------s~TTRp~R~~E~dG 78 (225)
++.+.|+||+||||| .-- +|-.|++.+
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl--~p~~G~I~~ 54 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ--ALQSKQVSR 54 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH--HHHTTSCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC--CCcCCeeee
Confidence 468899999999999 222 456677755
No 135
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=83.03 E-value=0.29 Score=38.26 Aligned_cols=15 Identities=7% Similarity=-0.053 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
.+.++|+||+|+|||
T Consensus 38 g~~~~l~G~~G~GKT 52 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKT 52 (180)
T ss_dssp CCEEEECCSSSSSHH
T ss_pred CCEEEEECCCCCCHH
Confidence 468999999999999
No 136
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.02 E-value=0.42 Score=39.84 Aligned_cols=16 Identities=6% Similarity=-0.064 Sum_probs=13.9
Q ss_pred CccEEEEccCCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTTE 65 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s 65 (225)
...|+|+||||+|||+
T Consensus 34 g~~ilI~GpsGsGKSt 49 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSE 49 (205)
T ss_dssp TEEEEEECCCTTTTHH
T ss_pred CEEEEEECCCCCCHHH
Confidence 4679999999999983
No 137
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=82.63 E-value=1.8 Score=37.57 Aligned_cols=13 Identities=0% Similarity=-0.066 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.+++.||+|+||+
T Consensus 26 a~L~~G~~G~GKt 38 (334)
T 1a5t_A 26 ALLIQALPGMGDD 38 (334)
T ss_dssp EEEEECCTTSCHH
T ss_pred eEEEECCCCchHH
Confidence 5899999999998
No 138
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=82.61 E-value=0.38 Score=40.17 Aligned_cols=16 Identities=0% Similarity=-0.164 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 30 ~Ge~~~i~G~nGsGKS 45 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKS 45 (237)
T ss_dssp TTCEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3568999999999999
No 139
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=82.51 E-value=0.38 Score=40.82 Aligned_cols=17 Identities=0% Similarity=-0.017 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++++.|+||||||||
T Consensus 30 ~~Ge~~~liG~nGsGKS 46 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKS 46 (262)
T ss_dssp CTTCEEEEECCTTSSHH
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 140
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=82.28 E-value=0.39 Score=40.17 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=37.2
Q ss_pred CeEEEEecCCHHHHHH-H---hc-c--CCHHHHHHHHHHHHHHH--Hhh---CCCCc-EEEECC--CHHHHHHHHHHHHH
Q psy10228 146 PVAIFIKPKSVESIME-M---NK-R--MTEEQAKKMYDRSMKME--QEF---GEFFT-AVVQGD--MPEDIYQKVKEVIQ 210 (225)
Q Consensus 146 Pi~IFI~pps~~~L~~-L---~~-R--~seeei~~rl~~a~k~E--~~~---~~~fd-~vI~Nd--dleea~~~lk~iI~ 210 (225)
.+.|||.++....+++ + .. + .+.+++.+.+..-...+ ... ....| ++|.|+ ++++++++|.++|.
T Consensus 164 ~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~~~I~~~i~ 243 (252)
T 4e22_A 164 PVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQALAYAQ 243 (252)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSSSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHHHHHHHHHH
Confidence 4789999864333333 2 12 2 25566554443221111 111 23455 666676 69999999999998
Q ss_pred hcc
Q psy10228 211 EQS 213 (225)
Q Consensus 211 ~~~ 213 (225)
...
T Consensus 244 ~~~ 246 (252)
T 4e22_A 244 RIL 246 (252)
T ss_dssp HHC
T ss_pred HHh
Confidence 754
No 141
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=82.24 E-value=0.36 Score=41.50 Aligned_cols=16 Identities=6% Similarity=-0.170 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++++.|+||||||||
T Consensus 33 ~Ge~~~iiGpnGsGKS 48 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKS 48 (275)
T ss_dssp TTSEEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3578999999999999
No 142
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=82.07 E-value=0.37 Score=41.06 Aligned_cols=16 Identities=6% Similarity=-0.031 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||||||||
T Consensus 36 ~Ge~~~liG~nGsGKS 51 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKS 51 (266)
T ss_dssp TTCEEEEECCTTSCHH
T ss_pred CCCEEEEECCCCCcHH
Confidence 3578999999999999
No 143
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=81.87 E-value=4.8 Score=33.68 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=40.9
Q ss_pred HHHHHHHc---CCeEEEEccH---HHHHHHHhhccCC-eEEEEecCCHHHHHHHhccC----------------------
Q psy10228 116 SVRDVAEK---GKHCILDVSG---NAIKRLQVASLYP-VAIFIKPKSVESIMEMNKRM---------------------- 166 (225)
Q Consensus 116 sV~~v~~~---gk~~ildv~~---~gvk~L~~~~~~P-i~IFI~pps~~~L~~L~~R~---------------------- 166 (225)
-|++.+.+ ++-.|||--| .-+..|......| .+|||..|.-..+++|..|.
T Consensus 75 ll~~~l~~~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~ 154 (230)
T 3gmt_A 75 LVKERLKEADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKD 154 (230)
T ss_dssp HHHHHHHSGGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBC
T ss_pred HHHHHHhCcccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcC
Confidence 34444443 3456777533 2233444333344 68888887644455565441
Q ss_pred -------------CHHHHHHHHHHHHHHHH----hhCCC-----------CcEEEECC--CHHHHHHHHHHHHHh
Q psy10228 167 -------------TEEQAKKMYDRSMKMEQ----EFGEF-----------FTAVVQGD--MPEDIYQKVKEVIQE 211 (225)
Q Consensus 167 -------------seeei~~rl~~a~k~E~----~~~~~-----------fd~vI~Nd--dleea~~~lk~iI~~ 211 (225)
+++.+++||+...+.-. -|... --++.+|. ++++.+++|..+|.+
T Consensus 155 d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~ 229 (230)
T 3gmt_A 155 DVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS 229 (230)
T ss_dssp TTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred CCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 36789999988753211 12110 11233443 789999999888754
No 144
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=81.85 E-value=0.42 Score=36.34 Aligned_cols=15 Identities=13% Similarity=-0.084 Sum_probs=13.5
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|+||+|+|||
T Consensus 43 ~~~~ll~G~~G~GKT 57 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKT 57 (195)
T ss_dssp SCEEEEECCTTSCHH
T ss_pred CCceEEECCCCCCHH
Confidence 457999999999999
No 145
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=81.81 E-value=0.41 Score=42.99 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++++.|+||||||||
T Consensus 28 ~~Ge~~~llGpsGsGKS 44 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKT 44 (359)
T ss_dssp CTTCEEEEEESTTSSHH
T ss_pred cCCCEEEEECCCCchHH
Confidence 34679999999999999
No 146
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=81.69 E-value=0.48 Score=35.97 Aligned_cols=15 Identities=7% Similarity=-0.104 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..+++|.||+|+||+
T Consensus 24 ~~~vll~G~~GtGKt 38 (145)
T 3n70_A 24 DIAVWLYGAPGTGRM 38 (145)
T ss_dssp CSCEEEESSTTSSHH
T ss_pred CCCEEEECCCCCCHH
Confidence 458999999999999
No 147
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=81.51 E-value=0.4 Score=40.05 Aligned_cols=16 Identities=0% Similarity=-0.062 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||||||||
T Consensus 27 ~Ge~~~i~G~nGsGKS 42 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKS 42 (243)
T ss_dssp TTEEEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 4568999999999999
No 148
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=81.42 E-value=0.4 Score=40.32 Aligned_cols=16 Identities=6% Similarity=-0.027 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||||||||
T Consensus 34 ~Ge~~~i~G~nGsGKS 49 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKS 49 (247)
T ss_dssp TTCEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3568999999999999
No 149
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=81.15 E-value=0.44 Score=38.33 Aligned_cols=14 Identities=7% Similarity=-0.206 Sum_probs=12.9
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..|+|+|++|||||
T Consensus 5 ~~I~i~G~~GSGKS 18 (218)
T 1vht_A 5 YIVALTGGIGSGKS 18 (218)
T ss_dssp EEEEEECCTTSCHH
T ss_pred eEEEEECCCCCCHH
Confidence 47899999999999
No 150
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=81.11 E-value=0.5 Score=41.26 Aligned_cols=18 Identities=0% Similarity=-0.322 Sum_probs=15.2
Q ss_pred CCCCccEEEEccCCCCCC
Q psy10228 47 GSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 47 ~~~~~~ivl~GpsgsGK~ 64 (225)
.....+|.|+||||||||
T Consensus 87 ~~~g~ivgI~G~sGsGKS 104 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKS 104 (312)
T ss_dssp SCCCEEEEEECCTTSCHH
T ss_pred CCCCEEEEEECCCCchHH
Confidence 344678999999999999
No 151
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=81.03 E-value=0.39 Score=38.31 Aligned_cols=13 Identities=8% Similarity=-0.020 Sum_probs=11.9
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.+.|+||+|||||
T Consensus 2 ~i~l~G~nGsGKT 14 (178)
T 1ye8_A 2 KIIITGEPGVGKT 14 (178)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999999
No 152
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=80.84 E-value=0.44 Score=39.38 Aligned_cols=16 Identities=6% Similarity=-0.178 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 34 ~Ge~~~iiG~NGsGKS 49 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKT 49 (214)
T ss_dssp TTCCEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3568999999999999
No 153
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=80.80 E-value=0.48 Score=40.45 Aligned_cols=17 Identities=6% Similarity=-0.109 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||||||||
T Consensus 43 ~~Ge~~~i~G~nGsGKS 59 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKS 59 (271)
T ss_dssp CTTCEEEEECSTTSSHH
T ss_pred CCCCEEEEECCCCCCHH
Confidence 34578999999999999
No 154
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=80.80 E-value=0.48 Score=40.40 Aligned_cols=17 Identities=6% Similarity=0.053 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 48 ~~Gei~~liG~NGsGKS 64 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKS 64 (263)
T ss_dssp CTTCEEEEECCTTSSHH
T ss_pred cCCCEEEEEcCCCCcHH
Confidence 34678999999999999
No 155
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=80.72 E-value=0.44 Score=40.81 Aligned_cols=14 Identities=0% Similarity=-0.180 Sum_probs=12.3
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-++|.||+|+|||
T Consensus 37 ~~lLl~GppGtGKT 50 (293)
T 3t15_A 37 LILGIWGGKGQGKS 50 (293)
T ss_dssp SEEEEEECTTSCHH
T ss_pred eEEEEECCCCCCHH
Confidence 45788899999999
No 156
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=80.72 E-value=0.44 Score=40.22 Aligned_cols=16 Identities=0% Similarity=0.005 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 32 ~Ge~~~liG~nGsGKS 47 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKS 47 (257)
T ss_dssp TTCEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 4568999999999999
No 157
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=80.69 E-value=0.49 Score=40.11 Aligned_cols=16 Identities=6% Similarity=-0.033 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||||||||
T Consensus 45 ~Ge~~~i~G~nGsGKS 60 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKS 60 (260)
T ss_dssp TTCEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 4568999999999999
No 158
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=80.59 E-value=0.45 Score=39.75 Aligned_cols=16 Identities=13% Similarity=-0.033 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 31 ~Ge~~~l~G~nGsGKS 46 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKT 46 (240)
T ss_dssp TTCEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3568999999999999
No 159
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=80.55 E-value=0.51 Score=41.09 Aligned_cols=16 Identities=6% Similarity=-0.045 Sum_probs=14.2
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
..+.+.|+||||||||
T Consensus 101 ~g~vi~lvG~nGsGKT 116 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKT 116 (304)
T ss_dssp SSSEEEEECSTTSSHH
T ss_pred CCeEEEEECCCCCcHH
Confidence 3568999999999999
No 160
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=80.32 E-value=0.46 Score=39.37 Aligned_cols=16 Identities=6% Similarity=0.003 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 33 ~Ge~~~i~G~nGsGKS 48 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKT 48 (229)
T ss_dssp TTCEEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3568999999999999
No 161
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=80.00 E-value=0.52 Score=42.65 Aligned_cols=17 Identities=6% Similarity=-0.033 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++++.|+||||||||
T Consensus 27 ~~Ge~~~llGpsGsGKS 43 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKS 43 (381)
T ss_dssp CTTCEEEEECCTTSSHH
T ss_pred CCCCEEEEEcCCCchHH
Confidence 34679999999999999
No 162
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=79.88 E-value=0.5 Score=37.13 Aligned_cols=16 Identities=13% Similarity=-0.153 Sum_probs=14.1
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 32 ~Ge~v~L~G~nGaGKT 47 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKT 47 (158)
T ss_dssp SCEEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3568999999999999
No 163
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=79.74 E-value=0.55 Score=39.88 Aligned_cols=16 Identities=6% Similarity=0.135 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 32 ~Ge~~~liG~nGsGKS 47 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKS 47 (266)
T ss_dssp TTCEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCcHH
Confidence 4568999999999999
No 164
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=79.58 E-value=0.55 Score=42.06 Aligned_cols=17 Identities=24% Similarity=-0.003 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++++.|+||||||||
T Consensus 27 ~~Ge~~~llGpnGsGKS 43 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKT 43 (359)
T ss_dssp CTTCEEEEECSTTSSHH
T ss_pred cCCCEEEEEcCCCchHH
Confidence 34678999999999999
No 165
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=79.53 E-value=0.57 Score=38.41 Aligned_cols=69 Identities=10% Similarity=0.063 Sum_probs=27.6
Q ss_pred cCC-eEEEEecCCHHHHHHHhccCC--HH----HHHHHHHHHHHHHH-hh--CCCCc-EEEECC-CHHHHHHHHHHHHHh
Q psy10228 144 LYP-VAIFIKPKSVESIMEMNKRMT--EE----QAKKMYDRSMKMEQ-EF--GEFFT-AVVQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 144 ~~P-i~IFI~pps~~~L~~L~~R~s--ee----ei~~rl~~a~k~E~-~~--~~~fd-~vI~Nd-dleea~~~lk~iI~~ 211 (225)
..| .+|||..|.-..++++.+|+. +. +..+++........ .+ ....+ .+|.++ ++++..++|.+++..
T Consensus 145 ~~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~ 224 (230)
T 2vp4_A 145 VQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESS 224 (230)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC---------------
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 345 789999875444555666552 21 45666666532111 11 22233 566655 799999999888865
Q ss_pred c
Q psy10228 212 Q 212 (225)
Q Consensus 212 ~ 212 (225)
.
T Consensus 225 ~ 225 (230)
T 2vp4_A 225 I 225 (230)
T ss_dssp -
T ss_pred H
Confidence 3
No 166
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=79.41 E-value=0.56 Score=42.06 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++++.|+||||||||
T Consensus 27 ~~Ge~~~llGpnGsGKS 43 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKS 43 (362)
T ss_dssp CTTCEEEEECCTTSSHH
T ss_pred CCCCEEEEECCCCchHH
Confidence 34678999999999999
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=79.40 E-value=0.55 Score=37.48 Aligned_cols=16 Identities=13% Similarity=0.017 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
....++|+||+|+|||
T Consensus 51 ~~~~~ll~G~~G~GKT 66 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRT 66 (242)
T ss_dssp SCSEEEEECSTTSSHH
T ss_pred CCCeEEEECCCCCCHH
Confidence 3568999999999999
No 168
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=79.39 E-value=0.52 Score=39.62 Aligned_cols=16 Identities=13% Similarity=0.007 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 28 ~Ge~~~l~G~nGsGKS 43 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKS 43 (250)
T ss_dssp TTCEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3568999999999999
No 169
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=79.37 E-value=0.49 Score=39.67 Aligned_cols=14 Identities=7% Similarity=-0.026 Sum_probs=13.2
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
+.+.|+||+|||||
T Consensus 25 e~~~liG~nGsGKS 38 (240)
T 2onk_A 25 DYCVLLGPTGAGKS 38 (240)
T ss_dssp SEEEEECCTTSSHH
T ss_pred EEEEEECCCCCCHH
Confidence 68899999999999
No 170
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=79.31 E-value=0.52 Score=35.97 Aligned_cols=13 Identities=8% Similarity=-0.041 Sum_probs=12.2
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 5 ~v~lvG~~gvGKS 17 (165)
T 2wji_A 5 EIALIGNPNVGKS 17 (165)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 171
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=79.18 E-value=0.58 Score=39.78 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 44 ~~Ge~~~l~G~NGsGKS 60 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKS 60 (267)
T ss_dssp CTTCEEEEECCTTSSHH
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34568999999999999
No 172
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=79.17 E-value=0.58 Score=39.66 Aligned_cols=17 Identities=24% Similarity=0.137 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 39 ~~Gei~~l~G~NGsGKS 55 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKT 55 (256)
T ss_dssp CTTCEEEEECCTTSSHH
T ss_pred cCCcEEEEECCCCCCHH
Confidence 34568999999999999
No 173
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=78.75 E-value=0.56 Score=41.06 Aligned_cols=18 Identities=0% Similarity=-0.071 Sum_probs=15.3
Q ss_pred CCCCccEEEEccCCCCCC
Q psy10228 47 GSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 47 ~~~~~~ivl~GpsgsGK~ 64 (225)
-..++.+.|+||||||||
T Consensus 123 i~~Ge~vaIvGpsGsGKS 140 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKS 140 (305)
T ss_dssp CTTCSEEEEECSSSSSHH
T ss_pred ecCCCEEEEECCCCCcHH
Confidence 344678999999999999
No 174
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=78.73 E-value=0.56 Score=41.61 Aligned_cols=15 Identities=7% Similarity=0.062 Sum_probs=13.8
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+..++|+||||||||
T Consensus 175 G~~i~ivG~sGsGKS 189 (361)
T 2gza_A 175 ERVIVVAGETGSGKT 189 (361)
T ss_dssp TCCEEEEESSSSCHH
T ss_pred CCEEEEECCCCCCHH
Confidence 468999999999999
No 175
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=78.68 E-value=0.6 Score=41.98 Aligned_cols=17 Identities=24% Similarity=0.079 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++++.|+||||||||
T Consensus 35 ~~Ge~~~llGpnGsGKS 51 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKT 51 (372)
T ss_dssp CTTCEEEEECCTTSSHH
T ss_pred CCCCEEEEECCCCChHH
Confidence 34678999999999999
No 176
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=78.67 E-value=0.56 Score=39.61 Aligned_cols=16 Identities=13% Similarity=0.023 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 25 ~Ge~~~liG~NGsGKS 40 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKS 40 (249)
T ss_dssp TTCEEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCcHH
Confidence 3568999999999999
No 177
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=78.61 E-value=0.57 Score=39.56 Aligned_cols=16 Identities=0% Similarity=-0.105 Sum_probs=14.2
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 30 ~Ge~~~l~G~nGsGKS 45 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKS 45 (253)
T ss_dssp TTCEEEEECCSSSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3568999999999999
No 178
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=78.44 E-value=0.52 Score=36.62 Aligned_cols=13 Identities=0% Similarity=-0.151 Sum_probs=12.5
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
+.+|+||+|||||
T Consensus 28 ~~~i~G~NGsGKS 40 (182)
T 3kta_A 28 FTAIVGANGSGKS 40 (182)
T ss_dssp EEEEEECTTSSHH
T ss_pred cEEEECCCCCCHH
Confidence 7899999999999
No 179
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=78.32 E-value=0.5 Score=36.02 Aligned_cols=15 Identities=13% Similarity=-0.071 Sum_probs=13.4
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|+||+|+|||
T Consensus 43 ~~~vll~G~~G~GKT 57 (187)
T 2p65_A 43 KNNPILLGDPGVGKT 57 (187)
T ss_dssp SCEEEEESCGGGCHH
T ss_pred CCceEEECCCCCCHH
Confidence 457899999999999
No 180
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=77.97 E-value=0.6 Score=40.09 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 46 ~Ge~~~liG~NGsGKS 61 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKT 61 (279)
T ss_dssp TTCEEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCcHH
Confidence 3568999999999999
No 181
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=77.96 E-value=0.62 Score=41.66 Aligned_cols=16 Identities=19% Similarity=0.000 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++++.|+||||||||
T Consensus 40 ~Ge~~~llGpnGsGKS 55 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKT 55 (355)
T ss_dssp TTCEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCcHH
Confidence 4578999999999999
No 182
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=77.95 E-value=0.64 Score=42.07 Aligned_cols=17 Identities=12% Similarity=-0.060 Sum_probs=15.1
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++++.|+||||||||
T Consensus 45 ~~Ge~~~llGpsGsGKS 61 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKS 61 (390)
T ss_dssp CTTCEEEEEESTTSSHH
T ss_pred cCCCEEEEECCCCChHH
Confidence 44679999999999999
No 183
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=77.87 E-value=7.9 Score=33.86 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-++|+||+|+|||
T Consensus 46 ~~lli~GpPGTGKT 59 (318)
T 3te6_A 46 KLFYITNADDSTKF 59 (318)
T ss_dssp CEEEEECCCSHHHH
T ss_pred CeEEEECCCCCCHH
Confidence 46899999999999
No 184
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=77.80 E-value=0.63 Score=38.45 Aligned_cols=68 Identities=13% Similarity=0.259 Sum_probs=40.8
Q ss_pred cCCeEEEEecCCHHHHHH-Hhcc---C-CHHHHHHHHHHHHH--HHH---hhCCCCcEEE----ECC-CHHHHHHHHHHH
Q psy10228 144 LYPVAIFIKPKSVESIME-MNKR---M-TEEQAKKMYDRSMK--MEQ---EFGEFFTAVV----QGD-MPEDIYQKVKEV 208 (225)
Q Consensus 144 ~~Pi~IFI~pps~~~L~~-L~~R---~-seeei~~rl~~a~k--~E~---~~~~~fd~vI----~Nd-dleea~~~lk~i 208 (225)
+...+|||..+....+.+ +.++ + +.+++.+++..-.+ .+. ......|+|| .|+ ++++.++++..+
T Consensus 153 ~~~~~i~v~th~~~~~~r~~~r~~~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~~dn~~~~~~l~~~i~~~ 232 (245)
T 2jeo_A 153 MFHLRLFVDTDSDVRLSRRVLRDVRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDI 232 (245)
T ss_dssp TCSEEEEEECCHHHHHHHHHHHHTC---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESSTTCHHHHHHHHHHHHHH
T ss_pred hcCeEEEEECCHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCCCCccHHHHHHHHHHHHH
Confidence 346788888876444544 3332 3 66777665543111 111 1246789998 343 588899999888
Q ss_pred HHh
Q psy10228 209 IQE 211 (225)
Q Consensus 209 I~~ 211 (225)
+..
T Consensus 233 ~~~ 235 (245)
T 2jeo_A 233 LNG 235 (245)
T ss_dssp HHT
T ss_pred Hhc
Confidence 864
No 185
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=77.69 E-value=0.94 Score=45.51 Aligned_cols=15 Identities=0% Similarity=-0.006 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
.+++|++|+||||||
T Consensus 24 ~~l~v~tG~SGSGKS 38 (916)
T 3pih_A 24 NRLVVITGVSGSGKS 38 (916)
T ss_dssp TSEEEEEESTTSSSH
T ss_pred CcEEEEECCCCCcHH
Confidence 458999999999998
No 186
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=77.65 E-value=0.63 Score=37.00 Aligned_cols=15 Identities=13% Similarity=-0.177 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+..++|+||+|||||
T Consensus 23 G~~~~i~G~~GsGKT 37 (235)
T 2w0m_A 23 GFFIALTGEPGTGKT 37 (235)
T ss_dssp TCEEEEECSTTSSHH
T ss_pred CCEEEEEcCCCCCHH
Confidence 468999999999999
No 187
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=77.49 E-value=0.65 Score=41.70 Aligned_cols=16 Identities=25% Similarity=0.092 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++++.|+||||||||
T Consensus 28 ~Ge~~~llGpnGsGKS 43 (372)
T 1g29_1 28 DGEFMILLGPSGCGKT 43 (372)
T ss_dssp TTCEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCcHHH
Confidence 4578999999999999
No 188
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=77.32 E-value=0.68 Score=35.73 Aligned_cols=14 Identities=0% Similarity=0.000 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|+|+|++|+|||
T Consensus 5 ~ki~ivG~~g~GKS 18 (172)
T 2gj8_A 5 MKVVIAGRPNAGKS 18 (172)
T ss_dssp EEEEEEESTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 45899999999999
No 189
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=77.17 E-value=0.73 Score=39.76 Aligned_cols=16 Identities=0% Similarity=-0.280 Sum_probs=14.1
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
....|.|+||+|||||
T Consensus 79 ~g~iigI~G~~GsGKS 94 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKS 94 (308)
T ss_dssp CCEEEEEEECTTSSHH
T ss_pred CCEEEEEECCCCCCHH
Confidence 3568999999999999
No 190
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=77.06 E-value=0.74 Score=39.74 Aligned_cols=15 Identities=7% Similarity=-0.057 Sum_probs=13.4
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...|.|+||||||||
T Consensus 31 ~~ii~I~G~sGsGKS 45 (290)
T 1odf_A 31 PLFIFFSGPQGSGKS 45 (290)
T ss_dssp CEEEEEECCTTSSHH
T ss_pred CeEEEEECCCCCCHH
Confidence 457899999999999
No 191
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=77.02 E-value=0.8 Score=39.00 Aligned_cols=13 Identities=15% Similarity=0.072 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 5 kI~lvG~~nvGKS 17 (272)
T 3b1v_A 5 EIALIGNPNSGKT 17 (272)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 192
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=76.77 E-value=0.7 Score=36.51 Aligned_cols=14 Identities=14% Similarity=-0.064 Sum_probs=13.3
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|.||+|+|||
T Consensus 55 ~~~~l~G~~GtGKT 68 (202)
T 2w58_A 55 KGLYLHGSFGVGKT 68 (202)
T ss_dssp CEEEEECSTTSSHH
T ss_pred CeEEEECCCCCCHH
Confidence 68999999999999
No 193
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=76.69 E-value=0.74 Score=39.80 Aligned_cols=17 Identities=6% Similarity=0.006 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||+|||||
T Consensus 62 ~~Ge~~~i~G~NGsGKS 78 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKT 78 (290)
T ss_dssp CTTCEEEEEESTTSSHH
T ss_pred cCCCEEEEECCCCCcHH
Confidence 34578999999999999
No 194
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=76.31 E-value=0.7 Score=34.98 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=13.4
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..+++|.||+|+||+
T Consensus 27 ~~~vll~G~~GtGKt 41 (143)
T 3co5_A 27 TSPVFLTGEAGSPFE 41 (143)
T ss_dssp SSCEEEEEETTCCHH
T ss_pred CCcEEEECCCCccHH
Confidence 357999999999998
No 195
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=76.27 E-value=0.67 Score=41.32 Aligned_cols=15 Identities=0% Similarity=-0.013 Sum_probs=13.6
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|+||+|||||
T Consensus 123 ~g~i~I~GptGSGKT 137 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKS 137 (356)
T ss_dssp SEEEEEECSTTSCHH
T ss_pred CCEEEEECCCCCCHH
Confidence 458999999999999
No 196
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=76.09 E-value=0.77 Score=37.03 Aligned_cols=14 Identities=14% Similarity=-0.031 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
+.+.|+||+|||||
T Consensus 2 ~~i~i~G~nG~GKT 15 (189)
T 2i3b_A 2 RHVFLTGPPGVGKT 15 (189)
T ss_dssp CCEEEESCCSSCHH
T ss_pred CEEEEECCCCChHH
Confidence 46899999999999
No 197
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=76.00 E-value=0.75 Score=36.48 Aligned_cols=15 Identities=7% Similarity=-0.252 Sum_probs=13.8
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+..++|+||+|+|||
T Consensus 20 G~~~~i~G~~GsGKT 34 (220)
T 2cvh_A 20 GVLTQVYGPYASGKT 34 (220)
T ss_dssp TSEEEEECSTTSSHH
T ss_pred CEEEEEECCCCCCHH
Confidence 568999999999999
No 198
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=75.86 E-value=0.81 Score=41.17 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=25.2
Q ss_pred CCCccEEEEccCCCCCC------CcccCCCCCCC--CCCcceEEecCHHHH
Q psy10228 48 SDQEPFMLCYTQDDPTT------EDTTRARREYE--VDGRDYHFVSSREQM 90 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~------s~TTRp~R~~E--~dG~dY~FV~s~eef 90 (225)
..++++.|+|||||||| .-- -+|-.|+ ++|.+..-. +..+.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL-~~p~~G~I~i~G~~i~~~-~~~~~ 100 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLL-ERPTEGSVLVDGQELTTL-SESEL 100 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS-SCCSEEEEEETTEECSSC-CHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcC-CCCCceEEEECCEECCcC-CHHHH
Confidence 34678999999999999 111 1233454 467665444 44443
No 199
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=75.73 E-value=0.77 Score=37.59 Aligned_cols=15 Identities=7% Similarity=-0.068 Sum_probs=13.6
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
++.++++||+|||||
T Consensus 76 g~~~~i~g~TGsGKT 90 (235)
T 3llm_A 76 NSVVIIRGATGCGKT 90 (235)
T ss_dssp CSEEEEECCTTSSHH
T ss_pred CCEEEEEeCCCCCcH
Confidence 468999999999999
No 200
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=75.69 E-value=0.46 Score=37.83 Aligned_cols=15 Identities=7% Similarity=0.056 Sum_probs=13.1
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..-|+|+|++|+|||
T Consensus 29 ~~~i~v~G~~~~GKS 43 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKS 43 (223)
T ss_dssp SCEEEEEESCHHHHH
T ss_pred CCEEEEEcCCCCCHH
Confidence 346899999999999
No 201
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=75.49 E-value=0.53 Score=41.18 Aligned_cols=17 Identities=6% Similarity=0.004 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||||||||
T Consensus 78 ~~Ge~vaivG~sGsGKS 94 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKS 94 (306)
T ss_dssp CTTCEEEEESSSCHHHH
T ss_pred cCCCEEEEECCCCchHH
Confidence 34678999999999999
No 202
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=75.46 E-value=0.72 Score=36.31 Aligned_cols=13 Identities=0% Similarity=-0.176 Sum_probs=12.3
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.|.|+|++|||||
T Consensus 4 ~i~i~G~~GsGKs 16 (208)
T 3ake_A 4 IVTIDGPSASGKS 16 (208)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 6899999999999
No 203
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=75.41 E-value=0.82 Score=38.93 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=14.0
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
++.+.|+||+|||||
T Consensus 30 Ge~~~i~G~NGsGKS 44 (263)
T 2pjz_A 30 GEKVIILGPNGSGKT 44 (263)
T ss_dssp SSEEEEECCTTSSHH
T ss_pred CEEEEEECCCCCCHH
Confidence 678999999999999
No 204
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=75.39 E-value=0.72 Score=41.17 Aligned_cols=15 Identities=0% Similarity=-0.048 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|+||+|||||
T Consensus 136 g~~i~ivG~~GsGKT 150 (372)
T 2ewv_A 136 MGLILVTGPTGSGKS 150 (372)
T ss_dssp SEEEEEECSSSSSHH
T ss_pred CCEEEEECCCCCCHH
Confidence 468999999999999
No 205
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=75.32 E-value=0.89 Score=39.42 Aligned_cols=14 Identities=14% Similarity=-0.109 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.+++|+|++|||||
T Consensus 5 ~v~~i~G~~GaGKT 18 (318)
T 1nij_A 5 AVTLLTGFLGAGKT 18 (318)
T ss_dssp EEEEEEESSSSSCH
T ss_pred cEEEEEecCCCCHH
Confidence 36799999999999
No 206
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=75.19 E-value=0.54 Score=41.90 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++++.|+||||||||
T Consensus 24 ~~Ge~~~llGpnGsGKS 40 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKT 40 (348)
T ss_dssp CTTCEEEEECCCTHHHH
T ss_pred cCCCEEEEECCCCccHH
Confidence 34678999999999999
No 207
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=75.05 E-value=0.82 Score=36.85 Aligned_cols=15 Identities=7% Similarity=-0.254 Sum_probs=13.8
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|+||+|+|||
T Consensus 24 G~~~~i~G~~GsGKT 38 (243)
T 1n0w_A 24 GSITEMFGEFRTGKT 38 (243)
T ss_dssp TSEEEEECCTTSSHH
T ss_pred CeEEEEECCCCCcHH
Confidence 568999999999999
No 208
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=74.71 E-value=0.83 Score=40.05 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+..++|+||+|||||
T Consensus 171 g~~v~i~G~~GsGKT 185 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKT 185 (330)
T ss_dssp TCCEEEEESTTSCHH
T ss_pred CCEEEEECCCCCCHH
Confidence 468999999999999
No 209
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=74.65 E-value=1 Score=45.58 Aligned_cols=15 Identities=0% Similarity=-0.037 Sum_probs=13.6
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
.+++|++|+||||||
T Consensus 46 ~~lvv~tG~SGSGKS 60 (993)
T 2ygr_A 46 DALIVFTGLSGSGKS 60 (993)
T ss_dssp SSEEEEEESTTSSHH
T ss_pred CCEEEEECCCCCcHH
Confidence 358999999999998
No 210
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=74.55 E-value=0.85 Score=39.56 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
...++.|+||+|||||
T Consensus 99 ~g~vi~lvG~nGsGKT 114 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKT 114 (302)
T ss_dssp SCEEEEEECCTTSCHH
T ss_pred CCcEEEEEcCCCCCHH
Confidence 3568999999999999
No 211
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=74.41 E-value=1.1 Score=45.43 Aligned_cols=15 Identities=7% Similarity=-0.028 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
.+++||+|+||||||
T Consensus 44 ~~lvv~tG~SGSGKS 58 (972)
T 2r6f_A 44 GKLVVLTGLSGSGKS 58 (972)
T ss_dssp TSEEEEEESTTSSHH
T ss_pred CcEEEEECCCCCCHH
Confidence 358999999999998
No 212
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=74.29 E-value=1 Score=36.74 Aligned_cols=15 Identities=13% Similarity=-0.082 Sum_probs=13.5
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|.||+|+|||
T Consensus 39 ~~~vll~G~~GtGKT 53 (262)
T 2qz4_A 39 PKGALLLGPPGCGKT 53 (262)
T ss_dssp CCEEEEESCTTSSHH
T ss_pred CceEEEECCCCCCHH
Confidence 457999999999999
No 213
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=74.17 E-value=37 Score=29.59 Aligned_cols=50 Identities=6% Similarity=-0.065 Sum_probs=32.5
Q ss_pred CccEEEEccCCCCCC----------------CcccCCCCCCCCCCcceEEecCHHHHHHhh-hCCcEEEEEEe
Q psy10228 50 QEPFMLCYTQDDPTT----------------EDTTRARREYEVDGRDYHFVSSREQMEKDI-QNHLFIEAGQY 105 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~----------------s~TTRp~R~~E~dG~dY~FV~s~eef~~~i-~~~~FiE~~~~ 105 (225)
..+||+-|.-||||+ -++|+.|-..|.. ++|. ..|...+ +.|.++-+-.+
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~---~~yl---~R~~~~LP~~G~IvIfDRs 152 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERG---QWYF---QRYVATFPTAGEFVLFDRS 152 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHT---SCTT---HHHHTTCCCTTCEEEEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHh---chHH---HHHHHhcccCCeEEEEECC
Confidence 458999999999998 4788888643432 2333 2344444 67777655443
No 214
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=73.97 E-value=0.96 Score=39.82 Aligned_cols=16 Identities=13% Similarity=-0.014 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
...++.|+||+|||||
T Consensus 128 ~g~vi~lvG~nGaGKT 143 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKT 143 (328)
T ss_dssp SSEEEEEECCTTSSHH
T ss_pred CCeEEEEECCCCCCHH
Confidence 3568999999999999
No 215
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=73.87 E-value=0.82 Score=40.26 Aligned_cols=14 Identities=0% Similarity=-0.275 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.+|.|+||||||||
T Consensus 93 ~iigI~GpsGSGKS 106 (321)
T 3tqc_A 93 YIIGIAGSVAVGKS 106 (321)
T ss_dssp EEEEEECCTTSSHH
T ss_pred EEEEEECCCCCCHH
Confidence 47789999999999
No 216
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=73.82 E-value=0.83 Score=37.59 Aligned_cols=12 Identities=17% Similarity=0.030 Sum_probs=11.7
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
++|.||+|+|||
T Consensus 52 ~ll~G~~G~GKT 63 (254)
T 1ixz_A 52 VLLVGPPGVGKT 63 (254)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 899999999999
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=73.51 E-value=0.85 Score=38.85 Aligned_cols=12 Identities=8% Similarity=-0.014 Sum_probs=11.3
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
+.|+||||||||
T Consensus 5 v~lvG~nGaGKS 16 (270)
T 3sop_A 5 IMVVGQSGLGKS 16 (270)
T ss_dssp EEEEESSSSSHH
T ss_pred EEEECCCCCCHH
Confidence 689999999999
No 218
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=73.42 E-value=1.2 Score=44.23 Aligned_cols=15 Identities=0% Similarity=-0.028 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
.+++|++|+||||||
T Consensus 36 ~~l~viTGvSGSGKS 50 (842)
T 2vf7_A 36 DALVVFTGVSGSGKS 50 (842)
T ss_dssp SSEEEEESSTTSSHH
T ss_pred CCEEEEECCCCCCHH
Confidence 358999999999998
No 219
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=73.14 E-value=0.9 Score=37.44 Aligned_cols=14 Identities=7% Similarity=0.057 Sum_probs=12.8
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|.||+|+|||
T Consensus 46 ~~vll~G~~GtGKT 59 (257)
T 1lv7_A 46 KGVLMVGPPGTGKT 59 (257)
T ss_dssp CEEEEECCTTSCHH
T ss_pred CeEEEECcCCCCHH
Confidence 46999999999999
No 220
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=73.02 E-value=0.54 Score=41.93 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++++.|+||||||||
T Consensus 29 ~~Ge~~~llGpnGsGKS 45 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKT 45 (353)
T ss_dssp CTTCEEEEECSCHHHHH
T ss_pred CCCCEEEEECCCCCcHH
Confidence 34678999999999999
No 221
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=72.89 E-value=0.96 Score=38.22 Aligned_cols=16 Identities=13% Similarity=0.040 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.+.+++|+||+|+|||
T Consensus 34 ~G~~~~i~G~~G~GKT 49 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKS 49 (296)
T ss_dssp TTCEEEEEESTTSSHH
T ss_pred CCeEEEEEeCCCCCHH
Confidence 3569999999999999
No 222
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=72.81 E-value=0.6 Score=35.22 Aligned_cols=18 Identities=6% Similarity=0.191 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHHHHHhc
Q psy10228 195 GDMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 195 Nddleea~~~lk~iI~~~ 212 (225)
+.++++++..|...+...
T Consensus 153 g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 153 QHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 457999999988877654
No 223
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=72.26 E-value=0.99 Score=35.42 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=12.9
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|.||+|+|||
T Consensus 46 ~~~ll~G~~G~GKT 59 (250)
T 1njg_A 46 HAYLFSGTRGVGKT 59 (250)
T ss_dssp SEEEEECSTTSCHH
T ss_pred eEEEEECCCCCCHH
Confidence 47899999999999
No 224
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=72.20 E-value=0.97 Score=35.14 Aligned_cols=13 Identities=8% Similarity=0.074 Sum_probs=12.2
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++|.||+|+|||
T Consensus 40 ~~ll~G~~G~GKT 52 (226)
T 2chg_A 40 HLLFSGPPGTGKT 52 (226)
T ss_dssp CEEEECSTTSSHH
T ss_pred eEEEECCCCCCHH
Confidence 4999999999999
No 225
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=72.04 E-value=1.6 Score=41.10 Aligned_cols=17 Identities=6% Similarity=-0.070 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||||||||
T Consensus 368 ~~G~~~~ivG~sGsGKS 384 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKS 384 (595)
T ss_dssp CTTCEEEEECCTTSSST
T ss_pred cCCCEEEEECCCCCCHH
Confidence 34578999999999999
No 226
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=71.92 E-value=1.1 Score=35.29 Aligned_cols=15 Identities=0% Similarity=-0.095 Sum_probs=13.5
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|+|++|||||
T Consensus 26 ~~~v~lvG~~g~GKS 40 (210)
T 1pui_A 26 GIEVAFAGRSNAGKS 40 (210)
T ss_dssp SEEEEEEECTTSSHH
T ss_pred CcEEEEECCCCCCHH
Confidence 457999999999999
No 227
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=71.88 E-value=1.7 Score=41.14 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=26.9
Q ss_pred CCCCccEEEEccCCCCCC---Cccc--CCCCCCC--CCCcceEEecCHHHHHH
Q psy10228 47 GSDQEPFMLCYTQDDPTT---EDTT--RARREYE--VDGRDYHFVSSREQMEK 92 (225)
Q Consensus 47 ~~~~~~ivl~GpsgsGK~---s~TT--Rp~R~~E--~dG~dY~FV~s~eef~~ 92 (225)
-..++.+.|+|||||||| ..-. -+|-.|+ ++|.|..-. +.++..+
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~-~~~~~r~ 429 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKI-KRSSLRS 429 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGS-CHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhC-CHHHHHh
Confidence 344679999999999999 1111 1334454 477664444 4444443
No 228
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=71.10 E-value=1.1 Score=36.01 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=13.8
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+..++|+||+|+|||
T Consensus 23 G~~~~i~G~~GsGKT 37 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKT 37 (247)
T ss_dssp TCEEEEEECTTSSHH
T ss_pred CcEEEEECCCCCCHH
Confidence 468999999999999
No 229
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=71.09 E-value=0.51 Score=37.57 Aligned_cols=14 Identities=21% Similarity=0.071 Sum_probs=12.5
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..+.|+|+||||||
T Consensus 3 ~~v~IvG~SGsGKS 16 (171)
T 2f1r_A 3 LILSIVGTSDSGKT 16 (171)
T ss_dssp CEEEEEESCHHHHH
T ss_pred eEEEEECCCCCCHH
Confidence 36889999999999
No 230
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=70.98 E-value=1.1 Score=34.78 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 4 kv~ivG~~gvGKS 16 (184)
T 2zej_A 4 KLMIVGNTGSGKT 16 (184)
T ss_dssp EEEEESCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3899999999999
No 231
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=70.72 E-value=1.1 Score=40.89 Aligned_cols=15 Identities=0% Similarity=-0.006 Sum_probs=13.6
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|+||+|||||
T Consensus 167 ggii~I~GpnGSGKT 181 (418)
T 1p9r_A 167 HGIILVTGPTGSGKS 181 (418)
T ss_dssp SEEEEEECSTTSCHH
T ss_pred CCeEEEECCCCCCHH
Confidence 458999999999999
No 232
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=70.69 E-value=1.1 Score=38.03 Aligned_cols=20 Identities=5% Similarity=0.087 Sum_probs=15.0
Q ss_pred hccCCeEEEEecCCHHHHHH
Q psy10228 142 ASLYPVAIFIKPKSVESIME 161 (225)
Q Consensus 142 ~~~~Pi~IFI~pps~~~L~~ 161 (225)
.+.+...|+|.+|+.+...+
T Consensus 166 ~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 166 PGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp TTSSCEEEECCSCCHHHHHH
T ss_pred cccCCeEEEeCCcCHHHHHH
Confidence 45677889999999766554
No 233
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=70.60 E-value=1.2 Score=37.41 Aligned_cols=15 Identities=13% Similarity=0.149 Sum_probs=13.5
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|.||+|+|||
T Consensus 54 ~~~vll~Gp~GtGKT 68 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKT 68 (297)
T ss_dssp CSEEEEESSSSSCHH
T ss_pred CCeEEEECcCCCCHH
Confidence 457999999999999
No 234
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=70.41 E-value=1.5 Score=36.81 Aligned_cols=15 Identities=7% Similarity=-0.104 Sum_probs=13.4
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|.||+|+|||
T Consensus 67 ~~~vll~G~~GtGKT 81 (309)
T 3syl_A 67 TLHMSFTGNPGTGKT 81 (309)
T ss_dssp CCEEEEEECTTSSHH
T ss_pred CceEEEECCCCCCHH
Confidence 347999999999999
No 235
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=70.37 E-value=0.97 Score=38.88 Aligned_cols=14 Identities=0% Similarity=-0.154 Sum_probs=12.8
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..|+|+|++|+|||
T Consensus 9 ~~VaIvG~~nvGKS 22 (301)
T 1ega_A 9 GFIAIVGRPNVGKS 22 (301)
T ss_dssp EEEEEECSSSSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 36899999999999
No 236
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=70.28 E-value=1.5 Score=36.48 Aligned_cols=15 Identities=13% Similarity=0.084 Sum_probs=13.4
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|.||+|+|||
T Consensus 51 ~~~~ll~G~~GtGKT 65 (285)
T 3h4m_A 51 PKGILLYGPPGTGKT 65 (285)
T ss_dssp CSEEEEESSSSSSHH
T ss_pred CCeEEEECCCCCcHH
Confidence 356999999999999
No 237
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=70.22 E-value=1.1 Score=35.11 Aligned_cols=14 Identities=7% Similarity=-0.152 Sum_probs=12.6
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
-.++|+|++|||||
T Consensus 30 ~kv~lvG~~g~GKS 43 (191)
T 1oix_A 30 FKVVLIGDSGVGKS 43 (191)
T ss_dssp EEEEEEECTTSSHH
T ss_pred eEEEEECcCCCCHH
Confidence 35799999999999
No 238
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=70.11 E-value=1.2 Score=38.22 Aligned_cols=15 Identities=0% Similarity=-0.228 Sum_probs=13.6
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...+.|+||||||||
T Consensus 169 geiv~l~G~sG~GKS 183 (301)
T 1u0l_A 169 GKISTMAGLSGVGKS 183 (301)
T ss_dssp SSEEEEECSTTSSHH
T ss_pred CCeEEEECCCCCcHH
Confidence 468899999999999
No 239
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=70.08 E-value=1.4 Score=36.26 Aligned_cols=15 Identities=7% Similarity=0.040 Sum_probs=13.1
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..-|+|+|++|+|||
T Consensus 22 ~~~I~lvG~~g~GKS 36 (260)
T 2xtp_A 22 ELRIILVGKTGTGKS 36 (260)
T ss_dssp CEEEEEEECTTSCHH
T ss_pred ceEEEEECCCCCCHH
Confidence 346899999999999
No 240
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=70.01 E-value=3.5 Score=37.62 Aligned_cols=14 Identities=14% Similarity=-0.126 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|+||+|+|||
T Consensus 202 ~~~LL~G~pG~GKT 215 (468)
T 3pxg_A 202 NNPVLIGEPGVGKT 215 (468)
T ss_dssp CEEEEESCTTTTTH
T ss_pred CCeEEECCCCCCHH
Confidence 46899999999999
No 241
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=69.76 E-value=1.2 Score=37.40 Aligned_cols=12 Identities=17% Similarity=0.030 Sum_probs=11.7
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
++|.||+|+|||
T Consensus 76 vll~Gp~GtGKT 87 (278)
T 1iy2_A 76 VLLVGPPGVGKT 87 (278)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCcChHH
Confidence 899999999999
No 242
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=69.74 E-value=1.4 Score=41.54 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=25.5
Q ss_pred CCCccEEEEccCCCCCC---CcccC--CCCCCC--CCCcceEEecCHHHHH
Q psy10228 48 SDQEPFMLCYTQDDPTT---EDTTR--ARREYE--VDGRDYHFVSSREQME 91 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~---s~TTR--p~R~~E--~dG~dY~FV~s~eef~ 91 (225)
..++.+.|+|||||||| ..-.+ +|-.|+ ++|.|..-. +.++..
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~-~~~~~r 414 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF-LTGSLR 414 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGS-CHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhC-CHHHHh
Confidence 34678999999999999 11111 233453 467664333 444443
No 243
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=69.61 E-value=1.2 Score=34.96 Aligned_cols=13 Identities=8% Similarity=-0.064 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-++|+|++|+|||
T Consensus 7 kv~lvG~~g~GKS 19 (199)
T 2f9l_A 7 KVVLIGDSGVGKS 19 (199)
T ss_dssp EEEEESSTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 4799999999999
No 244
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=69.43 E-value=1.6 Score=36.14 Aligned_cols=15 Identities=7% Similarity=0.229 Sum_probs=13.6
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..+++|.||+|+||+
T Consensus 29 ~~~vll~G~~GtGKt 43 (265)
T 2bjv_A 29 DKPVLIIGERGTGKE 43 (265)
T ss_dssp CSCEEEECCTTSCHH
T ss_pred CCCEEEECCCCCcHH
Confidence 358999999999999
No 245
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=69.17 E-value=1.3 Score=37.84 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=13.6
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..+++|.||+|+|||
T Consensus 37 ~~~lll~G~~GtGKT 51 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKT 51 (324)
T ss_dssp CSSEEEECSSSSSHH
T ss_pred CCeEEEECCCCCcHH
Confidence 458999999999999
No 246
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=69.03 E-value=1.6 Score=33.38 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHHHHHhccC
Q psy10228 195 GDMPEDIYQKVKEVIQEQSG 214 (225)
Q Consensus 195 Nddleea~~~lk~iI~~~~~ 214 (225)
++++++++..|.+.+.+..+
T Consensus 168 ~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 168 GDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp CTTHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHhcchhhc
Confidence 45788888888887766544
No 247
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=68.68 E-value=1.4 Score=38.01 Aligned_cols=28 Identities=18% Similarity=-0.014 Sum_probs=19.8
Q ss_pred CccEEEEccCCCCCC----CcccCCCCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT----EDTTRARREYEVD 77 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~----s~TTRp~R~~E~d 77 (225)
+..++|+||||+||| ..+--+|..|++.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~~~~~~~G~i~ 196 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLTGEELRTQEVS 196 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHSCCCCCSCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcccccc
Confidence 468899999999999 1114556677664
No 248
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=68.67 E-value=1.4 Score=37.04 Aligned_cols=16 Identities=6% Similarity=-0.166 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
..+.++|+||+|+|||
T Consensus 29 ~G~i~~i~G~~GsGKT 44 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKS 44 (279)
T ss_dssp TTSEEEEEESTTSSHH
T ss_pred CCCEEEEEcCCCCCHH
Confidence 3568999999999999
No 249
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=68.19 E-value=1.4 Score=39.34 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=14.2
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
...++.|+||+|||||
T Consensus 156 ~g~vi~lvG~nGsGKT 171 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKT 171 (359)
T ss_dssp SSEEEEEECCTTSCHH
T ss_pred CCeEEEEEcCCCChHH
Confidence 3568999999999999
No 250
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=68.16 E-value=0.69 Score=40.49 Aligned_cols=15 Identities=0% Similarity=-0.053 Sum_probs=13.8
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
++.++|+||||+|||
T Consensus 173 G~~~~lvG~sG~GKS 187 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKS 187 (307)
T ss_dssp TSEEEEEESHHHHHH
T ss_pred CCEEEEECCCCCCHH
Confidence 468999999999999
No 251
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=68.12 E-value=1.5 Score=37.43 Aligned_cols=15 Identities=7% Similarity=-0.042 Sum_probs=13.4
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|.||+|+|||
T Consensus 49 ~~~vLL~Gp~GtGKT 63 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKT 63 (301)
T ss_dssp CSEEEEECSSSSSHH
T ss_pred CceEEEECCCCcCHH
Confidence 357999999999999
No 252
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=68.01 E-value=1.6 Score=40.97 Aligned_cols=17 Identities=6% Similarity=0.034 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.+.|+||||||||
T Consensus 367 ~~G~~~~ivG~sGsGKS 383 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKS 383 (582)
T ss_pred CCCCEEEEECCCCCCHH
Confidence 34678999999999999
No 253
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=67.88 E-value=1.3 Score=36.74 Aligned_cols=14 Identities=14% Similarity=0.007 Sum_probs=12.9
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|.||+|+|||
T Consensus 65 ~~vLl~G~~GtGKT 78 (272)
T 1d2n_A 65 VSVLLEGPPHSGKT 78 (272)
T ss_dssp EEEEEECSTTSSHH
T ss_pred eEEEEECCCCCcHH
Confidence 47899999999999
No 254
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=67.86 E-value=1.6 Score=37.44 Aligned_cols=16 Identities=13% Similarity=-0.010 Sum_probs=14.1
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
....++|+||+|+|||
T Consensus 43 ~~~~vll~G~~G~GKT 58 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKT 58 (387)
T ss_dssp CCCCEEECBCTTSSHH
T ss_pred CCCcEEEECCCCCCHH
Confidence 3468999999999999
No 255
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=67.83 E-value=1.4 Score=38.20 Aligned_cols=14 Identities=14% Similarity=0.050 Sum_probs=12.9
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|.||+|+|||
T Consensus 52 ~~~ll~Gp~G~GKT 65 (334)
T 1in4_A 52 DHVLLAGPPGLGKT 65 (334)
T ss_dssp CCEEEESSTTSSHH
T ss_pred CeEEEECCCCCcHH
Confidence 46899999999999
No 256
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=67.81 E-value=1.4 Score=37.04 Aligned_cols=14 Identities=14% Similarity=0.102 Sum_probs=12.8
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.+++|.||+|+||+
T Consensus 48 ~~~ll~G~~GtGKt 61 (311)
T 4fcw_A 48 GSFLFLGPTGVGKT 61 (311)
T ss_dssp EEEEEESCSSSSHH
T ss_pred eEEEEECCCCcCHH
Confidence 37899999999999
No 257
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.54 E-value=1.7 Score=37.08 Aligned_cols=16 Identities=6% Similarity=0.023 Sum_probs=14.1
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
....++|+||+|+|||
T Consensus 44 ~~~~vli~G~~G~GKT 59 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKT 59 (386)
T ss_dssp CCCCEEEEECTTSSHH
T ss_pred CCCeEEEECCCCCCHH
Confidence 3568999999999999
No 258
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=67.51 E-value=19 Score=28.39 Aligned_cols=14 Identities=0% Similarity=-0.206 Sum_probs=12.8
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..|.|+||+|||||
T Consensus 6 ~~i~i~G~~GsGKS 19 (227)
T 1cke_A 6 PVITIDGPSGAGKG 19 (227)
T ss_dssp CEEEEECCTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 36899999999999
No 259
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=67.48 E-value=1.5 Score=41.99 Aligned_cols=15 Identities=0% Similarity=-0.161 Sum_probs=13.9
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
++.+.|+||||||||
T Consensus 348 Ge~vaIiGpnGsGKS 362 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKS 362 (670)
T ss_dssp TSEEEEECSTTSSHH
T ss_pred CCEEEEEeeCCCCHH
Confidence 578999999999999
No 260
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=67.36 E-value=1.5 Score=39.11 Aligned_cols=13 Identities=8% Similarity=-0.036 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++|+|++|+|||
T Consensus 181 ~V~lvG~~naGKS 193 (364)
T 2qtf_A 181 SIGIVGYTNSGKT 193 (364)
T ss_dssp EEEEECBTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3889999999999
No 261
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=67.35 E-value=1.4 Score=33.82 Aligned_cols=14 Identities=0% Similarity=-0.109 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.+.+|+||.|||||
T Consensus 24 g~~~I~G~NGsGKS 37 (149)
T 1f2t_A 24 GINLIIGQNGSGKS 37 (149)
T ss_dssp EEEEEECCTTSSHH
T ss_pred CeEEEECCCCCCHH
Confidence 37899999999999
No 262
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=67.15 E-value=1.5 Score=36.57 Aligned_cols=14 Identities=7% Similarity=0.005 Sum_probs=12.9
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|.||+|+|||
T Consensus 51 ~~vll~G~~GtGKT 64 (310)
T 1ofh_A 51 KNILMIGPTGVGKT 64 (310)
T ss_dssp CCEEEECCTTSSHH
T ss_pred ceEEEECCCCCCHH
Confidence 47999999999998
No 263
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=67.06 E-value=1.6 Score=39.31 Aligned_cols=16 Identities=13% Similarity=0.112 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
..+.++|+||+|+|||
T Consensus 168 ~~~~i~l~G~~GsGKS 183 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKT 183 (377)
T ss_dssp TCCEEEEECSTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3568999999999999
No 264
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=67.02 E-value=1.6 Score=40.97 Aligned_cols=16 Identities=6% Similarity=0.003 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||||||||
T Consensus 368 ~G~~~~ivG~sGsGKS 383 (582)
T 3b60_A 368 AGKTVALVGRSGSGKS 383 (582)
T ss_dssp TTCEEEEEECTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3578999999999999
No 265
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=66.96 E-value=1.6 Score=37.73 Aligned_cols=15 Identities=13% Similarity=-0.022 Sum_probs=13.8
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|.||+|+|||
T Consensus 152 ~~~lll~G~~GtGKT 166 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKS 166 (308)
T ss_dssp CCEEEEECSTTSSHH
T ss_pred CceEEEECCCCCCHH
Confidence 468999999999999
No 266
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=66.90 E-value=14 Score=30.09 Aligned_cols=15 Identities=0% Similarity=-0.261 Sum_probs=13.4
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...|.|+||+|||||
T Consensus 25 g~iigI~G~~GsGKS 39 (245)
T 2jeo_A 25 PFLIGVSGGTASGKS 39 (245)
T ss_dssp SEEEEEECSTTSSHH
T ss_pred CEEEEEECCCCCCHH
Confidence 457899999999999
No 267
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=66.83 E-value=2.2 Score=36.04 Aligned_cols=14 Identities=21% Similarity=0.086 Sum_probs=13.0
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|.||+|+||+
T Consensus 39 ~~vll~G~~GtGKT 52 (324)
T 1hqc_A 39 EHLLLFGPPGLGKT 52 (324)
T ss_dssp CCCEEECCTTCCCH
T ss_pred CcEEEECCCCCCHH
Confidence 47999999999999
No 268
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=66.18 E-value=1.6 Score=40.75 Aligned_cols=15 Identities=7% Similarity=-0.062 Sum_probs=13.4
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|+||+|||||
T Consensus 260 g~~i~I~GptGSGKT 274 (511)
T 2oap_1 260 KFSAIVVGETASGKT 274 (511)
T ss_dssp TCCEEEEESTTSSHH
T ss_pred CCEEEEECCCCCCHH
Confidence 457999999999999
No 269
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=66.00 E-value=1.6 Score=37.57 Aligned_cols=14 Identities=7% Similarity=0.093 Sum_probs=13.1
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|.||+|+|||
T Consensus 71 ~~vLl~GppGtGKT 84 (368)
T 3uk6_A 71 RAVLIAGQPGTGKT 84 (368)
T ss_dssp CEEEEEESTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 57999999999999
No 270
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=65.82 E-value=1.6 Score=32.44 Aligned_cols=13 Identities=0% Similarity=-0.082 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+++|++|+|||
T Consensus 7 ~i~v~G~~~~GKs 19 (168)
T 1z2a_A 7 KMVVVGNGAVGKS 19 (168)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 4799999999999
No 271
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=65.81 E-value=17 Score=29.80 Aligned_cols=16 Identities=0% Similarity=-0.284 Sum_probs=14.1
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
....|.|+||||||||
T Consensus 26 ~g~~I~I~G~~GsGKS 41 (252)
T 4e22_A 26 IAPVITVDGPSGAGKG 41 (252)
T ss_dssp TSCEEEEECCTTSSHH
T ss_pred CCcEEEEECCCCCCHH
Confidence 3468999999999999
No 272
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=65.71 E-value=1.6 Score=33.66 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=13.2
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..-|+|+|++|+|||
T Consensus 48 ~~~i~vvG~~g~GKS 62 (193)
T 2ged_A 48 QPSIIIAGPQNSGKT 62 (193)
T ss_dssp CCEEEEECCTTSSHH
T ss_pred CCEEEEECCCCCCHH
Confidence 346899999999999
No 273
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=65.56 E-value=1.6 Score=32.19 Aligned_cols=13 Identities=0% Similarity=-0.123 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+++|++|+|||
T Consensus 5 ~i~v~G~~~~GKS 17 (167)
T 1kao_A 5 KVVVLGSGGVGKS 17 (167)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3899999999999
No 274
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=65.54 E-value=1.8 Score=37.82 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=13.5
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|.||+|+|||
T Consensus 51 ~~~vll~GppGtGKT 65 (363)
T 3hws_A 51 KSNILLIGPTGSGKT 65 (363)
T ss_dssp CCCEEEECCTTSSHH
T ss_pred CCeEEEECCCCCCHH
Confidence 457999999999999
No 275
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=65.50 E-value=1.6 Score=33.38 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHHhccCCceeee
Q psy10228 195 GDMPEDIYQKVKEVIQEQSGPSIWVP 220 (225)
Q Consensus 195 Nddleea~~~lk~iI~~~~~~~~WVp 220 (225)
+.++++++..|...+.....++.|-.
T Consensus 153 ~~~v~~l~~~i~~~~~~~~~~~~~~~ 178 (188)
T 2wjg_A 153 KMGIEELKKAISIAVKDKKTAEIKYP 178 (188)
T ss_dssp TBSHHHHHHHHHHHHTTC--------
T ss_pred CCCHHHHHHHHHHHHHhccCccCCCH
Confidence 45899999999988877665445544
No 276
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=65.29 E-value=8.6 Score=34.52 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=22.1
Q ss_pred CccEEEEccCCCCCC-----------------CcccCCCCCC--CCCCcceEEecC
Q psy10228 50 QEPFMLCYTQDDPTT-----------------EDTTRARREY--EVDGRDYHFVSS 86 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~-----------------s~TTRp~R~~--E~dG~dY~FV~s 86 (225)
..-|+|+|.+|+||| +.|||..-.. +.+|..|.++++
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT 230 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDT 230 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTH
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEEC
Confidence 346899999999999 5677765432 557777777733
No 277
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=65.18 E-value=2.5 Score=35.99 Aligned_cols=13 Identities=8% Similarity=0.049 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++|.||+|+|||
T Consensus 60 ~~ll~G~~G~GKT 72 (353)
T 1sxj_D 60 HMLFYGPPGTGKT 72 (353)
T ss_dssp CEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 278
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=65.14 E-value=1.9 Score=40.64 Aligned_cols=45 Identities=11% Similarity=0.022 Sum_probs=27.2
Q ss_pred CCCccEEEEccCCCCCC---CcccC--CCCCCC--CCCcceEEecCHHHHHHh
Q psy10228 48 SDQEPFMLCYTQDDPTT---EDTTR--ARREYE--VDGRDYHFVSSREQMEKD 93 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~---s~TTR--p~R~~E--~dG~dY~FV~s~eef~~~ 93 (225)
..++.+.|+|||||||| ..-.| +|-.|+ ++|.|..-. +.++..+.
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~-~~~~~r~~ 418 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV-KLKDLRGH 418 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGB-CHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccC-CHHHHHhh
Confidence 34678999999999999 11111 233454 477765444 55555443
No 279
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=65.03 E-value=1.7 Score=32.13 Aligned_cols=12 Identities=0% Similarity=-0.014 Sum_probs=11.5
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+++|++|+|||
T Consensus 4 i~v~G~~~~GKS 15 (161)
T 2dyk_A 4 VVIVGRPNVGKS 15 (161)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 799999999999
No 280
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=64.56 E-value=2.2 Score=37.35 Aligned_cols=13 Identities=8% Similarity=0.028 Sum_probs=12.3
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.|+|+|++|||||
T Consensus 36 ~I~vvG~~~sGKS 48 (360)
T 3t34_A 36 AIAVVGGQSSGKS 48 (360)
T ss_dssp EEEEECBTTSSHH
T ss_pred EEEEECCCCCcHH
Confidence 6899999999999
No 281
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=64.46 E-value=1.7 Score=35.10 Aligned_cols=13 Identities=0% Similarity=-0.059 Sum_probs=11.9
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.|+|+|++|||||
T Consensus 1 ~ilV~Gg~~SGKS 13 (180)
T 1c9k_A 1 MILVTGGARSGKS 13 (180)
T ss_dssp CEEEEECTTSSHH
T ss_pred CEEEECCCCCcHH
Confidence 3789999999999
No 282
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=64.39 E-value=1.7 Score=31.91 Aligned_cols=12 Identities=0% Similarity=-0.047 Sum_probs=11.6
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+++|++|+|||
T Consensus 6 i~v~G~~~~GKs 17 (166)
T 2ce2_X 6 LVVVGAGGVGKS 17 (166)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 899999999999
No 283
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=64.38 E-value=1.8 Score=32.17 Aligned_cols=12 Identities=8% Similarity=-0.036 Sum_probs=11.6
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+++|++|+|||
T Consensus 6 i~v~G~~~~GKs 17 (170)
T 1ek0_A 6 LVLLGEAAVGKS 17 (170)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 799999999999
No 284
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=64.29 E-value=1.7 Score=38.45 Aligned_cols=13 Identities=0% Similarity=-0.197 Sum_probs=12.3
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
+++|+||+|||||
T Consensus 25 ~~~i~G~NGaGKT 37 (365)
T 3qf7_A 25 ITVVEGPNGAGKS 37 (365)
T ss_dssp EEEEECCTTSSHH
T ss_pred eEEEECCCCCCHH
Confidence 7889999999999
No 285
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=64.12 E-value=1.8 Score=32.62 Aligned_cols=13 Identities=8% Similarity=-0.056 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+++|++|+|||
T Consensus 10 ~i~v~G~~~~GKS 22 (182)
T 1ky3_A 10 KVIILGDSGVGKT 22 (182)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 286
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=64.09 E-value=1.5 Score=37.73 Aligned_cols=14 Identities=0% Similarity=-0.168 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..|+|+|.+|+|||
T Consensus 8 g~V~ivG~~nvGKS 21 (301)
T 1wf3_A 8 GFVAIVGKPNVGKS 21 (301)
T ss_dssp EEEEEECSTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 36899999999999
No 287
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=64.09 E-value=1.4 Score=38.72 Aligned_cols=15 Identities=0% Similarity=-0.011 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
.+.+.|+||||||||
T Consensus 170 g~k~~IvG~nGsGKS 184 (365)
T 1lw7_A 170 AKTVAILGGESSGKS 184 (365)
T ss_dssp CEEEEEECCTTSHHH
T ss_pred hCeEEEECCCCCCHH
Confidence 567899999999999
No 288
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=64.06 E-value=2.4 Score=38.85 Aligned_cols=16 Identities=0% Similarity=-0.263 Sum_probs=13.5
Q ss_pred CCcc--EEEEccCCCCCC
Q psy10228 49 DQEP--FMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~--ivl~GpsgsGK~ 64 (225)
.+.. +.|+||||||||
T Consensus 39 ~Gei~~vaLvG~nGaGKS 56 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKS 56 (427)
T ss_dssp -CCEEEEEEECSTTSSSH
T ss_pred CCCeeEEEEECCCCCCHH
Confidence 3557 899999999999
No 289
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=64.04 E-value=1.8 Score=32.27 Aligned_cols=12 Identities=8% Similarity=-0.025 Sum_probs=11.6
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+|+|++|+|||
T Consensus 5 i~~vG~~~~GKS 16 (166)
T 3q72_A 5 VLLLGAPGVGKS 16 (166)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 799999999999
No 290
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=64.03 E-value=2.7 Score=36.20 Aligned_cols=13 Identities=0% Similarity=-0.112 Sum_probs=12.6
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
+.+|+||+|||||
T Consensus 26 ~~~i~G~NGsGKS 38 (322)
T 1e69_A 26 VTAIVGPNGSGKS 38 (322)
T ss_dssp EEEEECCTTTCST
T ss_pred cEEEECCCCCcHH
Confidence 7899999999999
No 291
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=63.99 E-value=2.2 Score=36.34 Aligned_cols=14 Identities=0% Similarity=-0.019 Sum_probs=12.8
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|.||+|+|||
T Consensus 46 ~~vLl~G~~GtGKT 59 (350)
T 1g8p_A 46 GGVLVFGDRGTGKS 59 (350)
T ss_dssp CCEEEECCGGGCTT
T ss_pred ceEEEECCCCccHH
Confidence 36999999999999
No 292
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=63.87 E-value=1.6 Score=37.61 Aligned_cols=15 Identities=0% Similarity=-0.175 Sum_probs=13.3
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
.-.|+|+|.+|+|||
T Consensus 10 ~g~v~ivG~~nvGKS 24 (308)
T 3iev_A 10 VGYVAIVGKPNVGKS 24 (308)
T ss_dssp EEEEEEECSTTSSHH
T ss_pred CCEEEEECCCCCcHH
Confidence 347999999999999
No 293
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=63.83 E-value=1.9 Score=39.68 Aligned_cols=16 Identities=6% Similarity=0.040 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.+..+.|+||+|||||
T Consensus 137 ~Ge~v~IvGpnGsGKS 152 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKT 152 (460)
T ss_dssp SCCCEEEEESTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 4678999999999999
No 294
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=63.76 E-value=1.8 Score=32.28 Aligned_cols=12 Identities=17% Similarity=0.050 Sum_probs=11.5
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+|+|++|+|||
T Consensus 5 i~ivG~~~~GKS 16 (169)
T 3q85_A 5 VMLVGESGVGKS 16 (169)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 799999999999
No 295
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=63.61 E-value=1.8 Score=32.18 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHHHHHHhc
Q psy10228 195 GDMPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 195 Nddleea~~~lk~iI~~~ 212 (225)
+.++++++..|.+.+.+.
T Consensus 149 ~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 149 DDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TBSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 347999999988877654
No 296
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=63.58 E-value=1.5 Score=36.42 Aligned_cols=14 Identities=7% Similarity=0.088 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|+|+|.+|+|||
T Consensus 22 l~I~lvG~~g~GKS 35 (247)
T 3lxw_A 22 RRLILVGRTGAGKS 35 (247)
T ss_dssp EEEEEESSTTSSHH
T ss_pred eEEEEECCCCCcHH
Confidence 45899999999999
No 297
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=63.53 E-value=2.2 Score=36.66 Aligned_cols=13 Identities=15% Similarity=-0.115 Sum_probs=12.5
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++|+||+|+|||
T Consensus 46 ~~li~G~~G~GKT 58 (389)
T 1fnn_A 46 RATLLGRPGTGKT 58 (389)
T ss_dssp EEEEECCTTSSHH
T ss_pred eEEEECCCCCCHH
Confidence 7999999999999
No 298
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=63.48 E-value=2 Score=40.31 Aligned_cols=16 Identities=6% Similarity=-0.095 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
...+|.|+||+|||||
T Consensus 292 ~GeVI~LVGpNGSGKT 307 (503)
T 2yhs_A 292 APFVILMVGVNGVGKT 307 (503)
T ss_dssp TTEEEEEECCTTSSHH
T ss_pred CCeEEEEECCCcccHH
Confidence 3568999999999999
No 299
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=63.16 E-value=2.4 Score=36.19 Aligned_cols=14 Identities=7% Similarity=0.014 Sum_probs=12.8
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|.||+|+||+
T Consensus 56 ~~vll~G~~GtGKT 69 (338)
T 3pfi_A 56 DHILFSGPAGLGKT 69 (338)
T ss_dssp CCEEEECSTTSSHH
T ss_pred CeEEEECcCCCCHH
Confidence 46999999999999
No 300
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=62.94 E-value=2.1 Score=38.33 Aligned_cols=15 Identities=0% Similarity=-0.166 Sum_probs=13.6
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+..++|+||||+|||
T Consensus 215 G~~~~lvG~sG~GKS 229 (358)
T 2rcn_A 215 GRISIFAGQSGVGKS 229 (358)
T ss_dssp TSEEEEECCTTSSHH
T ss_pred CCEEEEECCCCccHH
Confidence 458999999999999
No 301
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=62.92 E-value=2.7 Score=31.89 Aligned_cols=14 Identities=14% Similarity=-0.033 Sum_probs=9.2
Q ss_pred cEEEEccCCCCCCC
Q psy10228 52 PFMLCYTQDDPTTE 65 (225)
Q Consensus 52 ~ivl~GpsgsGK~s 65 (225)
-|+|+|++|+|||+
T Consensus 10 ki~v~G~~~~GKss 23 (183)
T 2fu5_C 10 KLLLIGDSGVGKTC 23 (183)
T ss_dssp EEEEECCCCC----
T ss_pred EEEEECCCCCCHHH
Confidence 48999999999993
No 302
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=62.70 E-value=2 Score=31.73 Aligned_cols=13 Identities=0% Similarity=-0.036 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+++|++|+|||
T Consensus 6 ~i~v~G~~~~GKs 18 (168)
T 1u8z_A 6 KVIMVGSGGVGKS 18 (168)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 303
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=62.69 E-value=2.4 Score=36.50 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=14.2
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
....++|+||+|+|||
T Consensus 104 ~g~vi~lvG~~GsGKT 119 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKT 119 (296)
T ss_dssp CSSEEEEEESTTSSHH
T ss_pred CCcEEEEECCCCCCHH
Confidence 3568999999999999
No 304
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=62.50 E-value=2.1 Score=40.93 Aligned_cols=18 Identities=6% Similarity=-0.099 Sum_probs=15.4
Q ss_pred CCccEEEEccCCCCCCCc
Q psy10228 49 DQEPFMLCYTQDDPTTED 66 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~s~ 66 (225)
.++.+.|+||||||||+.
T Consensus 43 ~Ge~~~liGpNGaGKSTL 60 (670)
T 3ux8_A 43 RGKLVVLTGLSGSGKSSL 60 (670)
T ss_dssp TTSEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 357899999999999944
No 305
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=62.42 E-value=2 Score=32.33 Aligned_cols=13 Identities=8% Similarity=-0.082 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+++|++|+|||
T Consensus 9 ~i~v~G~~~~GKS 21 (177)
T 1wms_A 9 KVILLGDGGVGKS 21 (177)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4799999999999
No 306
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=62.31 E-value=2 Score=31.91 Aligned_cols=13 Identities=8% Similarity=-0.143 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+++|++|+|||
T Consensus 8 ~i~v~G~~~~GKS 20 (170)
T 1z0j_A 8 KVCLLGDTGVGKS 20 (170)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 4899999999999
No 307
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=62.23 E-value=2.1 Score=36.82 Aligned_cols=14 Identities=7% Similarity=0.048 Sum_probs=12.9
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-++|.||+|+|||
T Consensus 52 ~~vLl~GppGtGKT 65 (322)
T 3eie_A 52 SGILLYGPPGTGKS 65 (322)
T ss_dssp CEEEEECSSSSCHH
T ss_pred CeEEEECCCCCcHH
Confidence 46999999999999
No 308
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.20 E-value=2 Score=36.81 Aligned_cols=12 Identities=8% Similarity=0.108 Sum_probs=11.7
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
++|+||+|+|||
T Consensus 39 ~ll~Gp~G~GKT 50 (354)
T 1sxj_E 39 LLLYGPNGTGKK 50 (354)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 899999999999
No 309
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=62.11 E-value=0.53 Score=39.83 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=41.8
Q ss_pred CCeEEEEecCCHHHHHHHhccCC------HHHHHHHHHHHHHHHHhhCCCCcEEEECC-CHHHHHHHHHHHHHh
Q psy10228 145 YPVAIFIKPKSVESIMEMNKRMT------EEQAKKMYDRSMKMEQEFGEFFTAVVQGD-MPEDIYQKVKEVIQE 211 (225)
Q Consensus 145 ~Pi~IFI~pps~~~L~~L~~R~s------eeei~~rl~~a~k~E~~~~~~fd~vI~Nd-dleea~~~lk~iI~~ 211 (225)
...+|.+.++...+++++.+|+. .++. .+++.-...+.......|+||.|+ +++++..+|..++..
T Consensus 168 ~d~VvVvdv~~~~qieRl~~rg~~~v~i~~~~~-~~i~~Q~se~~~k~~~AD~VI~N~gsle~l~~qV~~ll~~ 240 (241)
T 1dek_A 168 YDYYIVPDTRQDHEMDAARAMGATVIHVVRPGQ-KSNDTHITEAGLPIRDGDLVITNDGSLEELFSKIKNTLKV 240 (241)
T ss_dssp CSEEEECCCCSHHHHHHHHHTTCEEEEEECTTC-CCSCCSGGGSCCCCCTTCEEEECCSCHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCcHHHHHHHHHCCCceEEEECccc-chhhcCCCcccccccCCCEEEECCCCHHHHHHHHHHHHhh
Confidence 35678888888888888766641 1111 112111011112346899999998 699999999998864
No 310
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=61.98 E-value=2.1 Score=31.80 Aligned_cols=12 Identities=8% Similarity=0.075 Sum_probs=11.5
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+++|++|+|||
T Consensus 3 i~~~G~~~~GKs 14 (164)
T 1r8s_A 3 ILMVGLDAAGKT 14 (164)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 789999999999
No 311
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=61.89 E-value=20 Score=27.92 Aligned_cols=15 Identities=7% Similarity=-0.197 Sum_probs=13.4
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...|.|+||+|||||
T Consensus 6 ~~~i~i~G~~GsGKS 20 (211)
T 3asz_A 6 PFVIGIAGGTASGKT 20 (211)
T ss_dssp CEEEEEEESTTSSHH
T ss_pred cEEEEEECCCCCCHH
Confidence 357899999999999
No 312
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=61.77 E-value=2.1 Score=31.71 Aligned_cols=13 Identities=0% Similarity=-0.074 Sum_probs=11.9
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+++|++|+|||
T Consensus 5 ki~v~G~~~~GKs 17 (167)
T 1c1y_A 5 KLVVLGSGGVGKS 17 (167)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3799999999999
No 313
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=61.75 E-value=2.1 Score=31.80 Aligned_cols=13 Identities=0% Similarity=-0.194 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+++|++|+|||
T Consensus 5 ~i~v~G~~~~GKs 17 (172)
T 2erx_A 5 RVAVFGAGGVGKS 17 (172)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 314
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=61.70 E-value=2.7 Score=36.20 Aligned_cols=15 Identities=7% Similarity=-0.130 Sum_probs=13.4
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|+||+|+|||
T Consensus 45 ~~~vll~G~~G~GKT 59 (384)
T 2qby_B 45 KFSNLFLGLTGTGKT 59 (384)
T ss_dssp CCEEEEEECTTSSHH
T ss_pred CCcEEEECCCCCCHH
Confidence 357999999999999
No 315
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=61.64 E-value=2.2 Score=31.83 Aligned_cols=13 Identities=15% Similarity=-0.166 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+++|++|+|||
T Consensus 8 ~i~v~G~~~~GKs 20 (170)
T 1z08_A 8 KVVLLGEGCVGKT 20 (170)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECcCCCCHH
Confidence 4799999999999
No 316
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=61.50 E-value=2.2 Score=36.96 Aligned_cols=14 Identities=7% Similarity=0.045 Sum_probs=13.0
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
+.++|.||+|+|||
T Consensus 46 ~~iLL~GppGtGKT 59 (322)
T 1xwi_A 46 RGILLFGPPGTGKS 59 (322)
T ss_dssp SEEEEESSSSSCHH
T ss_pred ceEEEECCCCccHH
Confidence 57999999999999
No 317
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=61.46 E-value=1.3 Score=35.35 Aligned_cols=13 Identities=15% Similarity=0.082 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 17 ki~v~G~~~~GKS 29 (221)
T 3gj0_A 17 KLVLVGDGGTGKT 29 (221)
T ss_dssp EEEEEECTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 318
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=61.44 E-value=2.1 Score=33.76 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|+|+|++|+|||
T Consensus 13 ~~i~~~G~~g~GKT 26 (218)
T 1nrj_B 13 PSIIIAGPQNSGKT 26 (218)
T ss_dssp CEEEEECSTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 45899999999999
No 319
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=61.28 E-value=2.2 Score=32.06 Aligned_cols=13 Identities=0% Similarity=-0.015 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 11 ~i~v~G~~~~GKs 23 (181)
T 3tw8_B 11 KLLIIGDSGVGKS 23 (181)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 4799999999999
No 320
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=61.14 E-value=2.7 Score=36.68 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=13.3
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|.||+|+|||
T Consensus 72 ~~~ill~Gp~GtGKT 86 (376)
T 1um8_A 72 KSNILLIGPTGSGKT 86 (376)
T ss_dssp CCCEEEECCTTSSHH
T ss_pred CCCEEEECCCCCCHH
Confidence 347999999999999
No 321
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=61.10 E-value=1.6 Score=39.75 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=19.6
Q ss_pred ccEEEEccCCCCCC-----------------CcccCCCCCC--CCCCcceEEe
Q psy10228 51 EPFMLCYTQDDPTT-----------------EDTTRARREY--EVDGRDYHFV 84 (225)
Q Consensus 51 ~~ivl~GpsgsGK~-----------------s~TTRp~R~~--E~dG~dY~FV 84 (225)
..|+|+|.+|+||| +.|||....+ +..|..+.++
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~li 76 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLI 76 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEE
Confidence 46899999999999 5677766443 3345555555
No 322
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=61.03 E-value=3 Score=31.99 Aligned_cols=15 Identities=7% Similarity=-0.053 Sum_probs=13.3
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..-|+|+|++|+|||
T Consensus 23 ~~~i~v~G~~~~GKS 37 (195)
T 1svi_A 23 LPEIALAGRSNVGKS 37 (195)
T ss_dssp CCEEEEEEBTTSSHH
T ss_pred CCEEEEECCCCCCHH
Confidence 456899999999999
No 323
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=61.02 E-value=2.3 Score=36.92 Aligned_cols=37 Identities=8% Similarity=-0.014 Sum_probs=22.8
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHHhccCCceeeeCCCC
Q psy10228 188 FFTAVVQGD-MPEDIYQKVKEVIQEQSGPSIWVPSKDP 224 (225)
Q Consensus 188 ~fd~vI~Nd-dleea~~~lk~iI~~~~~~~~WVp~~~~ 224 (225)
..+.+|.|. |.......+.++.....-|..++-..++
T Consensus 250 ~i~gvVlTk~D~~~~gG~~l~~~~~~~~Pi~~i~~Ge~ 287 (306)
T 1vma_A 250 NVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEK 287 (306)
T ss_dssp CCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCEEEEeCCCCccchHHHHHHHHHHCCCEEEEeCCCC
Confidence 456666654 4444555566777777667777766543
No 324
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=61.00 E-value=1.1 Score=37.06 Aligned_cols=14 Identities=14% Similarity=0.086 Sum_probs=12.4
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|.||+|+|||
T Consensus 45 ~~vll~G~~GtGKT 58 (268)
T 2r62_A 45 KGVLLVGPPGTGKT 58 (268)
T ss_dssp SCCCCBCSSCSSHH
T ss_pred ceEEEECCCCCcHH
Confidence 34889999999998
No 325
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=60.88 E-value=2.3 Score=32.06 Aligned_cols=15 Identities=13% Similarity=-0.015 Sum_probs=13.2
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..-|+|+|++|+|||
T Consensus 8 ~~~i~v~G~~~~GKs 22 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKT 22 (178)
T ss_dssp CCEEEEESCTTTTHH
T ss_pred CCEEEEECCCCCCHH
Confidence 446899999999999
No 326
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=60.77 E-value=3.2 Score=38.88 Aligned_cols=18 Identities=0% Similarity=-0.163 Sum_probs=15.8
Q ss_pred CCCCccEEEEccCCCCCC
Q psy10228 47 GSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 47 ~~~~~~ivl~GpsgsGK~ 64 (225)
-..++.+.|+||+|||||
T Consensus 44 i~~Ge~~~LvG~NGaGKS 61 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKS 61 (538)
T ss_dssp CCTTSEEEEECCTTSSHH
T ss_pred CCCCCEEEEECCCCCCHH
Confidence 355789999999999999
No 327
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=60.75 E-value=2.6 Score=37.81 Aligned_cols=15 Identities=0% Similarity=-0.157 Sum_probs=13.8
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..+++|+||+|||||
T Consensus 26 ~~~~~i~G~nG~GKs 40 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKS 40 (430)
T ss_dssp CSEEEEECSTTSSHH
T ss_pred CCEEEEECCCCCCHH
Confidence 468999999999999
No 328
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=60.75 E-value=2.3 Score=39.65 Aligned_cols=14 Identities=7% Similarity=-0.185 Sum_probs=13.2
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
+.+.|+||||||||
T Consensus 30 e~~~liG~nGsGKS 43 (483)
T 3euj_A 30 LVTTLSGGNGAGKS 43 (483)
T ss_dssp SEEEEECCTTSSHH
T ss_pred ceEEEECCCCCcHH
Confidence 68899999999999
No 329
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=60.71 E-value=2.3 Score=31.76 Aligned_cols=14 Identities=7% Similarity=-0.031 Sum_probs=12.6
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|+++|++|+|||
T Consensus 8 ~~i~v~G~~~~GKs 21 (171)
T 1upt_A 8 MRILILGLDGAGKT 21 (171)
T ss_dssp EEEEEECSTTSSHH
T ss_pred cEEEEECCCCCCHH
Confidence 35899999999999
No 330
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=60.43 E-value=1.7 Score=36.37 Aligned_cols=13 Identities=15% Similarity=-0.033 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|.+|+|||
T Consensus 3 kI~lvG~~n~GKS 15 (256)
T 3iby_A 3 HALLIGNPNCGKT 15 (256)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 331
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=60.31 E-value=2.3 Score=32.00 Aligned_cols=20 Identities=0% Similarity=0.135 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHHHhccC
Q psy10228 195 GDMPEDIYQKVKEVIQEQSG 214 (225)
Q Consensus 195 Nddleea~~~lk~iI~~~~~ 214 (225)
+.++++++..|...+.+...
T Consensus 156 ~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 156 RLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp TBSHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhhc
Confidence 45799999999888876543
No 332
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=60.25 E-value=2.3 Score=32.50 Aligned_cols=15 Identities=0% Similarity=-0.066 Sum_probs=13.1
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..-|+|+|++|+|||
T Consensus 23 ~~~i~v~G~~~~GKS 37 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKS 37 (195)
T ss_dssp TCEEEEEEBTTSSHH
T ss_pred CeEEEEECCCCCCHH
Confidence 346899999999999
No 333
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=60.12 E-value=2.3 Score=34.55 Aligned_cols=14 Identities=7% Similarity=-0.026 Sum_probs=12.6
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|+|+|++|+|||
T Consensus 30 ~~i~lvG~~g~GKS 43 (239)
T 3lxx_A 30 LRIVLVGKTGAGKS 43 (239)
T ss_dssp EEEEEECCTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 35899999999999
No 334
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=59.98 E-value=2.6 Score=36.92 Aligned_cols=16 Identities=0% Similarity=-0.251 Sum_probs=14.1
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
....+.|+||+|||||
T Consensus 54 ~g~~v~i~G~~GaGKS 69 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKS 69 (337)
T ss_dssp CSEEEEEECCTTSCHH
T ss_pred CCeEEEEECCCCCCHH
Confidence 3568999999999998
No 335
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=59.79 E-value=2.1 Score=36.75 Aligned_cols=13 Identities=8% Similarity=0.013 Sum_probs=11.8
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+||+|+|||
T Consensus 20 ~I~lvG~nG~GKS 32 (301)
T 2qnr_A 20 TLMVVGESGLGKS 32 (301)
T ss_dssp EEEEEEETTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3699999999999
No 336
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=59.79 E-value=2.5 Score=39.17 Aligned_cols=16 Identities=13% Similarity=-0.033 Sum_probs=14.5
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.++|+||+|||||
T Consensus 38 ~Ge~~~l~G~nGsGKS 53 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKT 53 (525)
T ss_dssp TTSEEEEEESTTSSHH
T ss_pred CCeEEEEEcCCCCCHH
Confidence 3579999999999999
No 337
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=59.78 E-value=2.5 Score=38.20 Aligned_cols=26 Identities=8% Similarity=-0.150 Sum_probs=20.9
Q ss_pred CccEEEEccCCCCCC-----------------CcccCCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT-----------------EDTTRARREYE 75 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~-----------------s~TTRp~R~~E 75 (225)
...+.|+|++|+||| |.||+.|-.|.
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~ 62 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAK 62 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeee
Confidence 457899999999998 56788886553
No 338
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=59.77 E-value=2.5 Score=38.23 Aligned_cols=15 Identities=7% Similarity=-0.250 Sum_probs=13.9
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+.+++|+||||||||
T Consensus 178 Gei~~I~G~sGsGKT 192 (400)
T 3lda_A 178 GSITELFGEFRTGKS 192 (400)
T ss_dssp TSEEEEEESTTSSHH
T ss_pred CcEEEEEcCCCCChH
Confidence 568999999999999
No 339
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=59.76 E-value=2.9 Score=35.72 Aligned_cols=14 Identities=0% Similarity=-0.161 Sum_probs=12.5
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-++++|.+|+|||
T Consensus 121 ~~v~~vG~~nvGKS 134 (282)
T 1puj_A 121 IRALIIGIPNVGKS 134 (282)
T ss_dssp EEEEEEESTTSSHH
T ss_pred ceEEEEecCCCchH
Confidence 35899999999998
No 340
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=59.69 E-value=2.4 Score=31.83 Aligned_cols=13 Identities=15% Similarity=0.020 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 16 ~i~v~G~~~~GKs 28 (179)
T 2y8e_A 16 KLVFLGEQSVGKT 28 (179)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 341
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=59.65 E-value=2.2 Score=32.38 Aligned_cols=14 Identities=7% Similarity=-0.050 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|+|+|++|+|||
T Consensus 19 ~~i~v~G~~~~GKs 32 (183)
T 1moz_A 19 LRILILGLDGAGKT 32 (183)
T ss_dssp EEEEEEEETTSSHH
T ss_pred cEEEEECCCCCCHH
Confidence 35899999999999
No 342
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=59.60 E-value=2.4 Score=32.18 Aligned_cols=13 Identities=15% Similarity=0.025 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 13 ki~v~G~~~~GKS 25 (195)
T 3bc1_A 13 KFLALGDSGVGKT 25 (195)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 343
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=59.57 E-value=2.4 Score=31.38 Aligned_cols=13 Identities=8% Similarity=-0.038 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+++|++|+|||
T Consensus 8 ~i~v~G~~~~GKs 20 (170)
T 1r2q_A 8 KLVLLGESAVGKS 20 (170)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4799999999999
No 344
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=59.56 E-value=2.4 Score=32.16 Aligned_cols=13 Identities=0% Similarity=-0.010 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 6 ki~v~G~~~~GKS 18 (189)
T 4dsu_A 6 KLVVVGADGVGKS 18 (189)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4799999999999
No 345
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=59.55 E-value=2.4 Score=35.16 Aligned_cols=67 Identities=10% Similarity=0.027 Sum_probs=35.5
Q ss_pred CC-eEEEEecCCHHHHHHHhccCC------HHHHHHHHHHHHHHHHh----------hCCCCcEEEECC-CHHHHHHHHH
Q psy10228 145 YP-VAIFIKPKSVESIMEMNKRMT------EEQAKKMYDRSMKMEQE----------FGEFFTAVVQGD-MPEDIYQKVK 206 (225)
Q Consensus 145 ~P-i~IFI~pps~~~L~~L~~R~s------eeei~~rl~~a~k~E~~----------~~~~fd~vI~Nd-dleea~~~lk 206 (225)
.| ++||+..|.-..++++.+|+. ..+..+++....+.-.. +......+|..+ ++++.+++|.
T Consensus 174 ~pd~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~~~~eev~~~I~ 253 (263)
T 1p5z_B 174 ELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLV 253 (263)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECCCCHHHHHHHHH
Confidence 45 789999874333444665542 12333344333210000 111123455544 7999999999
Q ss_pred HHHHh
Q psy10228 207 EVIQE 211 (225)
Q Consensus 207 ~iI~~ 211 (225)
+.|..
T Consensus 254 ~~l~~ 258 (263)
T 1p5z_B 254 EKVKE 258 (263)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88864
No 346
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=59.55 E-value=2.4 Score=32.71 Aligned_cols=14 Identities=14% Similarity=0.050 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
--|+|+|++|+|||
T Consensus 17 ~ki~ivG~~~vGKS 30 (181)
T 1fzq_A 17 VRILLLGLDNAGKT 30 (181)
T ss_dssp EEEEEEESTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 35899999999999
No 347
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=59.50 E-value=2.6 Score=33.78 Aligned_cols=15 Identities=13% Similarity=0.034 Sum_probs=13.9
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+..++|.|++|+|||
T Consensus 30 G~l~~i~G~pG~GKT 44 (251)
T 2zts_A 30 GTTVLLTGGTGTGKT 44 (251)
T ss_dssp TCEEEEECCTTSSHH
T ss_pred CeEEEEEeCCCCCHH
Confidence 568999999999999
No 348
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=59.50 E-value=2.8 Score=37.83 Aligned_cols=13 Identities=0% Similarity=0.020 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.|+|+|.+++|||
T Consensus 3 ~v~ivG~pnvGKS 15 (439)
T 1mky_A 3 TVLIVGRPNVGKS 15 (439)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 349
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=59.28 E-value=3.1 Score=35.68 Aligned_cols=15 Identities=0% Similarity=0.005 Sum_probs=13.5
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..+++|.||+|+||+
T Consensus 25 ~~~vLi~Ge~GtGKt 39 (304)
T 1ojl_A 25 DATVLIHGDSGTGKE 39 (304)
T ss_dssp TSCEEEESCTTSCHH
T ss_pred CCcEEEECCCCchHH
Confidence 357999999999999
No 350
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=58.99 E-value=2.5 Score=34.36 Aligned_cols=13 Identities=15% Similarity=0.043 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
+++++|++|||||
T Consensus 7 i~l~tG~pGsGKT 19 (199)
T 2r2a_A 7 ICLITGTPGSGKT 19 (199)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEEeCCCCCHH
Confidence 6789999999999
No 351
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=58.75 E-value=2.6 Score=32.71 Aligned_cols=13 Identities=0% Similarity=-0.133 Sum_probs=12.2
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 22 ki~ivG~~~vGKS 34 (184)
T 3ihw_A 22 KVGIVGNLSSGKS 34 (184)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 352
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=58.66 E-value=2.6 Score=31.75 Aligned_cols=13 Identities=8% Similarity=-0.036 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 8 ki~v~G~~~~GKs 20 (178)
T 2hxs_A 8 KIVVLGDGASGKT 20 (178)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 4799999999999
No 353
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=58.53 E-value=3.1 Score=38.46 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=20.4
Q ss_pred cEEEEccCCCCCC-----------------CcccCCCCCC--CCCCcceEEecC
Q psy10228 52 PFMLCYTQDDPTT-----------------EDTTRARREY--EVDGRDYHFVSS 86 (225)
Q Consensus 52 ~ivl~GpsgsGK~-----------------s~TTRp~R~~--E~dG~dY~FV~s 86 (225)
.|+|+|++|+||| +.|||..... +.+|..+.++++
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT 288 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDT 288 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEEC
Confidence 4899999999999 5677776443 556777777743
No 354
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=58.31 E-value=18 Score=29.16 Aligned_cols=17 Identities=6% Similarity=-0.050 Sum_probs=14.9
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..+.+|+|.||+|||||
T Consensus 18 ~~g~~i~i~G~~GsGKS 34 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKT 34 (230)
T ss_dssp CCCEEEEEECSTTSCHH
T ss_pred CCceEEEEECCCCCCHH
Confidence 34579999999999999
No 355
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=58.10 E-value=2.6 Score=32.04 Aligned_cols=13 Identities=8% Similarity=0.163 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 12 ki~v~G~~~~GKS 24 (186)
T 2bme_A 12 KFLVIGNAGTGKS 24 (186)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 356
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=58.10 E-value=2.6 Score=36.25 Aligned_cols=12 Identities=8% Similarity=0.094 Sum_probs=11.6
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
++|.||+|+||+
T Consensus 49 ~ll~Gp~G~GKT 60 (340)
T 1sxj_C 49 LLFYGPPGTGKT 60 (340)
T ss_dssp EEEECSSSSSHH
T ss_pred EEEECCCCCCHH
Confidence 899999999999
No 357
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=57.69 E-value=2.5 Score=33.24 Aligned_cols=13 Identities=8% Similarity=0.054 Sum_probs=12.2
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 27 ki~lvG~~~vGKS 39 (198)
T 1f6b_A 27 KLVFLGLDNAGKT 39 (198)
T ss_dssp EEEEEEETTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 358
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=57.52 E-value=2.8 Score=31.74 Aligned_cols=13 Identities=8% Similarity=-0.130 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+++|++|+|||
T Consensus 7 ~i~~~G~~~~GKs 19 (186)
T 1mh1_A 7 KCVVVGDGAVGKT 19 (186)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 359
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=57.41 E-value=2.8 Score=31.95 Aligned_cols=13 Identities=8% Similarity=-0.125 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 9 ki~v~G~~~~GKS 21 (208)
T 3clv_A 9 KTVLLGESSVGKS 21 (208)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 360
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=57.32 E-value=2.7 Score=37.03 Aligned_cols=15 Identities=13% Similarity=-0.179 Sum_probs=13.9
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+..+.|+||+|||||
T Consensus 131 G~i~~I~G~~GsGKT 145 (349)
T 1pzn_A 131 QAITEVFGEFGSGKT 145 (349)
T ss_dssp SEEEEEEESTTSSHH
T ss_pred CeEEEEECCCCCCHH
Confidence 568999999999999
No 361
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=57.28 E-value=2.8 Score=32.44 Aligned_cols=13 Identities=0% Similarity=-0.036 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 16 ki~v~G~~~~GKS 28 (206)
T 2bov_A 16 KVIMVGSGGVGKS 28 (206)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 362
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=57.14 E-value=2.3 Score=35.46 Aligned_cols=14 Identities=0% Similarity=-0.133 Sum_probs=12.5
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
--|+++|++|+|||
T Consensus 40 ~~I~vvG~~g~GKS 53 (270)
T 1h65_A 40 LTILVMGKGGVGKS 53 (270)
T ss_dssp EEEEEEESTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 35899999999999
No 363
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=57.05 E-value=3 Score=39.17 Aligned_cols=16 Identities=13% Similarity=-0.089 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++++.|+||+|||||
T Consensus 293 ~Gei~~i~G~nGsGKS 308 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKT 308 (538)
T ss_dssp TTCEEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3678999999999999
No 364
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=57.01 E-value=2.8 Score=31.94 Aligned_cols=13 Identities=8% Similarity=-0.148 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 16 ki~vvG~~~~GKs 28 (198)
T 3t1o_A 16 KIVYYGPGLSGKT 28 (198)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 365
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=57.00 E-value=4.5 Score=31.42 Aligned_cols=14 Identities=7% Similarity=-0.057 Sum_probs=12.5
Q ss_pred cEEEEccCCCCCCC
Q psy10228 52 PFMLCYTQDDPTTE 65 (225)
Q Consensus 52 ~ivl~GpsgsGK~s 65 (225)
-|+|+|++|+|||+
T Consensus 35 ki~vvG~~~~GKSs 48 (199)
T 3l0i_B 35 KLLLIGDSGVGKSC 48 (199)
T ss_dssp EEEEECCTTSCCTT
T ss_pred EEEEECCCCCCHHH
Confidence 57999999999993
No 366
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=57.00 E-value=1.8 Score=40.98 Aligned_cols=25 Identities=4% Similarity=0.045 Sum_probs=18.9
Q ss_pred CCcEEEECC--CHHHHHHHHHHHHHhc
Q psy10228 188 FFTAVVQGD--MPEDIYQKVKEVIQEQ 212 (225)
Q Consensus 188 ~fd~vI~Nd--dleea~~~lk~iI~~~ 212 (225)
..|.+|.++ ++++++++|...|...
T Consensus 514 ~adl~Idt~~~s~~e~v~~Il~~L~~~ 540 (552)
T 3cr8_A 514 TPELAIDTTGLAIDEAVQQILLKLEHE 540 (552)
T ss_dssp SCSEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHhc
Confidence 457777654 6899999999888653
No 367
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=57.00 E-value=3.3 Score=39.57 Aligned_cols=18 Identities=11% Similarity=-0.101 Sum_probs=15.5
Q ss_pred CCCCccEEEEccCCCCCC
Q psy10228 47 GSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 47 ~~~~~~ivl~GpsgsGK~ 64 (225)
...++.+.|+||+|||||
T Consensus 100 ~~~Gei~~LvGpNGaGKS 117 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKS 117 (608)
T ss_dssp CCTTSEEEEECCTTSSHH
T ss_pred CCCCCEEEEECCCCChHH
Confidence 345679999999999999
No 368
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=56.95 E-value=3.7 Score=39.15 Aligned_cols=18 Identities=11% Similarity=-0.108 Sum_probs=15.7
Q ss_pred CCCCccEEEEccCCCCCC
Q psy10228 47 GSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 47 ~~~~~~ivl~GpsgsGK~ 64 (225)
-..++.+.|+||+|||||
T Consensus 114 i~~Ge~~~LiG~NGsGKS 131 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKT 131 (607)
T ss_dssp CCTTSEEEEECCTTSSHH
T ss_pred CCCCCEEEEECCCCChHH
Confidence 355689999999999999
No 369
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=56.88 E-value=2.8 Score=33.71 Aligned_cols=14 Identities=0% Similarity=-0.109 Sum_probs=12.8
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.+.+|+||.|||||
T Consensus 24 ~~~~I~G~NgsGKS 37 (203)
T 3qks_A 24 GINLIIGQNGSGKS 37 (203)
T ss_dssp EEEEEECCTTSSHH
T ss_pred CeEEEEcCCCCCHH
Confidence 37899999999999
No 370
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=56.83 E-value=7.3 Score=38.54 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=35.5
Q ss_pred ccEEEEccCCCCCC---CcccCCCCCCCCCCcceEEecCHHHHHHhhhCCcEEEEEEeCCcceeecHHHHHHHHHc---C
Q psy10228 51 EPFMLCYTQDDPTT---EDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEK---G 124 (225)
Q Consensus 51 ~~ivl~GpsgsGK~---s~TTRp~R~~E~dG~dY~FV~s~eef~~~i~~~~FiE~~~~~gn~YGTs~~sV~~v~~~---g 124 (225)
+=|+|.||+|+||| ...- +| -|..++.| +-.++. +.++|-+...++++.+. .
T Consensus 239 ~GILL~GPPGTGKT~LAraiA-----~e-lg~~~~~v-~~~~l~---------------sk~~gese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVA-----NE-TGAFFFLI-NGPEIM---------------SKLAGESESNLRKAFEEAEKN 296 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHH-----TT-TTCEEEEE-EHHHHH---------------SSCTTHHHHHHHHHHHHHTTS
T ss_pred CeEEEECCCCCCHHHHHHHHH-----HH-hCCeEEEE-EhHHhh---------------cccchHHHHHHHHHHHHHHHc
Confidence 45899999999999 1111 11 24556667 555543 34678777777776543 4
Q ss_pred CeEEEE
Q psy10228 125 KHCILD 130 (225)
Q Consensus 125 k~~ild 130 (225)
..||+-
T Consensus 297 ~PsIIf 302 (806)
T 3cf2_A 297 APAIIF 302 (806)
T ss_dssp CSEEEE
T ss_pred CCeEEE
Confidence 455553
No 371
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=56.79 E-value=4.5 Score=31.57 Aligned_cols=14 Identities=0% Similarity=-0.026 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
+-+++++|+|+|||
T Consensus 41 ~~~lv~apTGsGKT 54 (206)
T 1vec_A 41 RDILARAKNGTGKS 54 (206)
T ss_dssp CCEEEECCSSSTTH
T ss_pred CCEEEECCCCCchH
Confidence 45899999999999
No 372
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=56.76 E-value=6.7 Score=37.97 Aligned_cols=32 Identities=6% Similarity=0.028 Sum_probs=24.1
Q ss_pred ccccccccCCCCCCCCCCccEEEEccCCCCCC
Q psy10228 33 KFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~ 64 (225)
.+|++.-+...-......+.+++++|+|||||
T Consensus 215 ~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT 246 (666)
T 3o8b_A 215 RSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKS 246 (666)
T ss_dssp HSCSCCCCCSCCCCCSSCEEEEEECCTTSCTT
T ss_pred cCCcHHHHHHHHHHHHcCCeEEEEeCCchhHH
Confidence 56777666554444555678999999999999
No 373
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=56.71 E-value=2.8 Score=40.85 Aligned_cols=14 Identities=7% Similarity=0.026 Sum_probs=12.9
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|||+|.||||||
T Consensus 95 QsIiisGESGAGKT 108 (697)
T 1lkx_A 95 QCVIISGESGAGKT 108 (697)
T ss_dssp EEEEEECSTTSSHH
T ss_pred cEEEecCCCCCCch
Confidence 46999999999999
No 374
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=56.55 E-value=3 Score=31.46 Aligned_cols=13 Identities=8% Similarity=-0.003 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+++|++|+|||
T Consensus 14 ki~v~G~~~~GKS 26 (181)
T 2efe_B 14 KLVLLGDVGAGKS 26 (181)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECcCCCCHH
Confidence 4899999999999
No 375
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=56.54 E-value=2.9 Score=37.89 Aligned_cols=15 Identities=13% Similarity=0.073 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..+++|.||+|+|||
T Consensus 130 ~~~lll~Gp~G~GKT 144 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKT 144 (440)
T ss_dssp SCCEEEECSSSSSHH
T ss_pred CCeEEEECCCCCCHH
Confidence 458999999999999
No 376
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=56.47 E-value=2.9 Score=31.72 Aligned_cols=13 Identities=0% Similarity=-0.074 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 20 ki~v~G~~~~GKS 32 (183)
T 3kkq_A 20 KLVVVGDGGVGKS 32 (183)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4799999999999
No 377
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=56.30 E-value=2.9 Score=38.07 Aligned_cols=12 Identities=8% Similarity=0.011 Sum_probs=11.5
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
|+|+||||+|||
T Consensus 34 I~lvG~sGaGKS 45 (418)
T 2qag_C 34 LMVVGESGLGKS 45 (418)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCcHH
Confidence 699999999999
No 378
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=56.21 E-value=3 Score=32.13 Aligned_cols=13 Identities=15% Similarity=-0.041 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 27 ki~v~G~~~~GKS 39 (193)
T 2oil_A 27 KVVLIGESGVGKT 39 (193)
T ss_dssp EEEEESSTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 5899999999999
No 379
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=56.17 E-value=3 Score=31.42 Aligned_cols=13 Identities=23% Similarity=0.059 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 12 ~i~v~G~~~~GKs 24 (180)
T 2g6b_A 12 KVMLVGDSGVGKT 24 (180)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 5899999999999
No 380
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=56.15 E-value=2.9 Score=34.07 Aligned_cols=14 Identities=0% Similarity=-0.204 Sum_probs=13.0
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.+|+|.|+.|||||
T Consensus 3 ~~i~~~G~~g~GKt 16 (241)
T 2ocp_A 3 RRLSIEGNIAVGKS 16 (241)
T ss_dssp EEEEEEECTTSSHH
T ss_pred eEEEEEcCCCCCHH
Confidence 47999999999999
No 381
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=56.13 E-value=2.9 Score=32.51 Aligned_cols=13 Identities=8% Similarity=0.084 Sum_probs=12.3
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+++|++|+|||
T Consensus 25 ki~~vG~~~vGKS 37 (190)
T 1m2o_B 25 KLLFLGLDNAGKT 37 (190)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 382
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=56.12 E-value=3 Score=31.47 Aligned_cols=13 Identities=0% Similarity=-0.036 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 20 ki~v~G~~~~GKS 32 (187)
T 2a9k_A 20 KVIMVGSGGVGKS 32 (187)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 383
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=55.97 E-value=3.3 Score=36.19 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=13.6
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|.||+|+|||
T Consensus 117 ~~~vLl~GppGtGKT 131 (357)
T 3d8b_A 117 PKGILLFGPPGTGKT 131 (357)
T ss_dssp CSEEEEESSTTSSHH
T ss_pred CceEEEECCCCCCHH
Confidence 457999999999999
No 384
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=55.87 E-value=3.1 Score=36.15 Aligned_cols=14 Identities=0% Similarity=-0.109 Sum_probs=12.9
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.+.+|+||.|||||
T Consensus 24 ~~~~i~G~NGsGKS 37 (339)
T 3qkt_A 24 GINLIIGQNGSGKS 37 (339)
T ss_dssp EEEEEECCTTSSHH
T ss_pred CeEEEECCCCCCHH
Confidence 47899999999999
No 385
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=55.74 E-value=3 Score=36.50 Aligned_cols=14 Identities=7% Similarity=0.048 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-++|.||+|+|||
T Consensus 85 ~~iLL~GppGtGKT 98 (355)
T 2qp9_X 85 SGILLYGPPGTGKS 98 (355)
T ss_dssp CCEEEECSTTSCHH
T ss_pred ceEEEECCCCCcHH
Confidence 46999999999999
No 386
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=55.68 E-value=3.1 Score=34.68 Aligned_cols=13 Identities=8% Similarity=0.074 Sum_probs=12.2
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++|.||+|+||+
T Consensus 40 ~~ll~G~~G~GKt 52 (319)
T 2chq_A 40 HLLFSGPPGTGKT 52 (319)
T ss_dssp CEEEESSSSSSHH
T ss_pred eEEEECcCCcCHH
Confidence 4899999999998
No 387
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=55.60 E-value=12 Score=33.71 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=23.5
Q ss_pred CccEEEEccCCCCCC-----------------CcccCCCCC--CCCCCcceEEecC
Q psy10228 50 QEPFMLCYTQDDPTT-----------------EDTTRARRE--YEVDGRDYHFVSS 86 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~-----------------s~TTRp~R~--~E~dG~dY~FV~s 86 (225)
..-|+++|.+++||| +.||+..-. -+.+|..|.++++
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT 250 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDT 250 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTG
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEEC
Confidence 345799999999998 667777643 3567777777733
No 388
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=55.49 E-value=3.1 Score=31.38 Aligned_cols=13 Identities=8% Similarity=-0.210 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+++|++|+|||
T Consensus 10 ki~v~G~~~~GKs 22 (182)
T 3bwd_D 10 KCVTVGDGAVGKT 22 (182)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 389
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=55.49 E-value=3 Score=31.94 Aligned_cols=13 Identities=8% Similarity=-0.031 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+++|++|+|||
T Consensus 9 ki~v~G~~~vGKS 21 (184)
T 1m7b_A 9 KIVVVGDSQCGKT 21 (184)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999999
No 390
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=55.48 E-value=3.1 Score=31.12 Aligned_cols=14 Identities=0% Similarity=-0.069 Sum_probs=12.5
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|+++|++|+|||
T Consensus 16 ~~i~v~G~~~~GKS 29 (179)
T 1z0f_A 16 FKYIIIGDMGVGKS 29 (179)
T ss_dssp EEEEEECSTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 35899999999999
No 391
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=55.44 E-value=3.1 Score=32.62 Aligned_cols=13 Identities=15% Similarity=0.031 Sum_probs=12.2
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 25 ki~vvG~~~vGKS 37 (195)
T 3cbq_A 25 KVMLVGESGVGKS 37 (195)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 392
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.43 E-value=3.7 Score=37.85 Aligned_cols=15 Identities=20% Similarity=-0.068 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|+||+|+|||
T Consensus 77 ~~~lLL~GppGtGKT 91 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKT 91 (516)
T ss_dssp CSEEEEECSTTSSHH
T ss_pred CcEEEEECCCCCCHH
Confidence 468999999999999
No 393
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=55.35 E-value=3.5 Score=38.66 Aligned_cols=16 Identities=6% Similarity=-0.122 Sum_probs=14.1
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++++.|+||+|||||
T Consensus 24 ~Gei~gLiGpNGaGKS 39 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKT 39 (538)
T ss_dssp TTEEEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCcHH
Confidence 3568999999999999
No 394
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=55.33 E-value=3.1 Score=31.83 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHHHhcc
Q psy10228 195 GDMPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 195 Nddleea~~~lk~iI~~~~ 213 (225)
+.++++++..|.+.+.+..
T Consensus 167 ~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 167 RQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp CTTHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 3579999999888876654
No 395
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=55.25 E-value=3.9 Score=38.53 Aligned_cols=24 Identities=8% Similarity=0.012 Sum_probs=19.2
Q ss_pred CCccEEEEccCCCCCCCcccCCCC
Q psy10228 49 DQEPFMLCYTQDDPTTEDTTRARR 72 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~s~TTRp~R 72 (225)
++..+++.|+||+|||+.++-|.|
T Consensus 212 ~g~~~~ffGlSGtGKTTLs~d~~r 235 (524)
T 1ii2_A 212 QGDVTVFFGLSGTGKTTLSADPHR 235 (524)
T ss_dssp TCCEEEEECCTTSSHHHHHCCTTS
T ss_pred CCCEEEEEccCCcchhhhhhccCC
Confidence 346899999999999977775544
No 396
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=55.18 E-value=3 Score=36.63 Aligned_cols=18 Identities=6% Similarity=-0.045 Sum_probs=14.5
Q ss_pred CccEEEEccCCCCCCCcc
Q psy10228 50 QEPFMLCYTQDDPTTEDT 67 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~T 67 (225)
+.-++|+|+||+|||+.+
T Consensus 144 g~~vl~~G~sG~GKSt~a 161 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETA 161 (314)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred CEEEEEEeCCCCCHHHHH
Confidence 456999999999998333
No 397
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=55.10 E-value=3.2 Score=31.67 Aligned_cols=14 Identities=7% Similarity=0.024 Sum_probs=12.6
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|+++|++|+|||
T Consensus 19 ~~i~v~G~~~~GKs 32 (186)
T 1ksh_A 19 LRLLMLGLDNAGKT 32 (186)
T ss_dssp EEEEEECSTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 35899999999999
No 398
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=55.07 E-value=1.9 Score=36.16 Aligned_cols=13 Identities=15% Similarity=-0.026 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 7 kI~lvG~~nvGKT 19 (258)
T 3a1s_A 7 KVALAGCPNVGKT 19 (258)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 399
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.92 E-value=3.2 Score=38.00 Aligned_cols=12 Identities=17% Similarity=0.097 Sum_probs=11.7
Q ss_pred EEEEccCCCCCC
Q psy10228 53 FMLCYTQDDPTT 64 (225)
Q Consensus 53 ivl~GpsgsGK~ 64 (225)
++|.||+|+|||
T Consensus 209 iLL~GPPGtGKT 220 (428)
T 4b4t_K 209 VLLYGPPGTGKT 220 (428)
T ss_dssp EEEESCTTTTHH
T ss_pred EEEECCCCCCHH
Confidence 899999999999
No 400
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=54.86 E-value=3.2 Score=31.46 Aligned_cols=13 Identities=0% Similarity=-0.146 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 8 ki~~~G~~~~GKS 20 (181)
T 3t5g_A 8 KIAILGYRSVGKS 20 (181)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 4899999999999
No 401
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=54.68 E-value=3.5 Score=32.70 Aligned_cols=15 Identities=7% Similarity=-0.144 Sum_probs=13.3
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..+++++||.|+|||
T Consensus 3 g~i~vi~G~~gsGKT 17 (184)
T 2orw_A 3 GKLTVITGPMYSGKT 17 (184)
T ss_dssp CCEEEEEESTTSSHH
T ss_pred cEEEEEECCCCCCHH
Confidence 357899999999999
No 402
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.67 E-value=3.2 Score=38.10 Aligned_cols=14 Identities=7% Similarity=-0.012 Sum_probs=12.6
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
+=|+|.||+|+|||
T Consensus 216 rGvLLyGPPGTGKT 229 (434)
T 4b4t_M 216 KGALMYGPPGTGKT 229 (434)
T ss_dssp CEEEEESCTTSSHH
T ss_pred CeeEEECcCCCCHH
Confidence 35899999999999
No 403
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=54.60 E-value=3.2 Score=32.09 Aligned_cols=15 Identities=0% Similarity=-0.232 Sum_probs=4.2
Q ss_pred cEEEEccCCCCCCCc
Q psy10228 52 PFMLCYTQDDPTTED 66 (225)
Q Consensus 52 ~ivl~GpsgsGK~s~ 66 (225)
-|+|+|++|+|||+.
T Consensus 22 ~i~v~G~~~~GKssl 36 (208)
T 2yc2_C 22 KVAVVGEATVGKSAL 36 (208)
T ss_dssp EEEEC----------
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999943
No 404
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=54.53 E-value=3.5 Score=38.53 Aligned_cols=15 Identities=13% Similarity=-0.095 Sum_probs=13.3
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|+||+|+|||
T Consensus 108 g~~vll~Gp~GtGKT 122 (543)
T 3m6a_A 108 GPILCLAGPPGVGKT 122 (543)
T ss_dssp SCEEEEESSSSSSHH
T ss_pred CCEEEEECCCCCCHH
Confidence 447899999999999
No 405
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=54.31 E-value=4.1 Score=38.56 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=19.0
Q ss_pred CCccEEEEccCCCCCCCcccCCCC
Q psy10228 49 DQEPFMLCYTQDDPTTEDTTRARR 72 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~s~TTRp~R 72 (225)
++..+++.|+||+|||+.++=|.|
T Consensus 240 ~g~~~lffGlSGtGKTTLs~d~~r 263 (540)
T 2olr_A 240 KGDVAVFFGLSGTGKTTLSTDPKR 263 (540)
T ss_dssp TSCEEEEECSTTSSHHHHHCCTTS
T ss_pred CCCEEEEEccCCCCHHHHhcCcCC
Confidence 346899999999999976665544
No 406
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=54.02 E-value=3.3 Score=36.49 Aligned_cols=14 Identities=0% Similarity=-0.118 Sum_probs=13.0
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.+.+|+||+|+|||
T Consensus 26 gl~vi~G~NGaGKT 39 (371)
T 3auy_A 26 GIVAIIGENGSGKS 39 (371)
T ss_dssp EEEEEEECTTSSHH
T ss_pred CeEEEECCCCCCHH
Confidence 47899999999999
No 407
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.93 E-value=3.3 Score=38.01 Aligned_cols=14 Identities=14% Similarity=0.074 Sum_probs=12.6
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
+=|+|.||+|+|||
T Consensus 216 rGvLL~GPPGtGKT 229 (437)
T 4b4t_L 216 KGVLLYGPPGTGKT 229 (437)
T ss_dssp CEEEEESCTTSSHH
T ss_pred CeEEEECCCCCcHH
Confidence 35899999999999
No 408
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=53.79 E-value=2.4 Score=40.27 Aligned_cols=13 Identities=8% Similarity=0.028 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++|+||||||||
T Consensus 47 ~iaIvG~nGsGKS 59 (608)
T 3szr_A 47 AIAVIGDQSSGKS 59 (608)
T ss_dssp CEECCCCTTSCHH
T ss_pred eEEEECCCCChHH
Confidence 4899999999999
No 409
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=53.74 E-value=3.5 Score=31.70 Aligned_cols=14 Identities=14% Similarity=-0.033 Sum_probs=12.5
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
--|+|+|++|+|||
T Consensus 23 ~ki~vvG~~~~GKS 36 (189)
T 2gf9_A 23 FKLLLIGNSSVGKT 36 (189)
T ss_dssp EEEEEECSTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 35899999999999
No 410
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=53.70 E-value=3.4 Score=32.83 Aligned_cols=14 Identities=14% Similarity=-0.002 Sum_probs=12.5
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..|+|+|.+|+|||
T Consensus 39 ~~i~ivG~~gvGKT 52 (226)
T 2hf9_A 39 VAFDFMGAIGSGKT 52 (226)
T ss_dssp EEEEEEESTTSSHH
T ss_pred eEEEEEcCCCCCHH
Confidence 36899999999999
No 411
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=53.67 E-value=3.8 Score=39.13 Aligned_cols=15 Identities=13% Similarity=0.100 Sum_probs=13.5
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
++.+.|+||+|||||
T Consensus 378 GEiv~iiG~NGsGKS 392 (608)
T 3j16_B 378 SEILVMMGENGTGKT 392 (608)
T ss_dssp TCEEEEESCTTSSHH
T ss_pred ceEEEEECCCCCcHH
Confidence 367899999999999
No 412
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=53.58 E-value=3.5 Score=32.64 Aligned_cols=14 Identities=7% Similarity=-0.128 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..|+|+|++|+|||
T Consensus 31 ~~i~i~G~~g~GKT 44 (221)
T 2wsm_A 31 VAVNIMGAIGSGKT 44 (221)
T ss_dssp EEEEEEECTTSCHH
T ss_pred eEEEEEcCCCCCHH
Confidence 46899999999999
No 413
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=53.56 E-value=3.5 Score=31.58 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHHHhccCC
Q psy10228 195 GDMPEDIYQKVKEVIQEQSGP 215 (225)
Q Consensus 195 Nddleea~~~lk~iI~~~~~~ 215 (225)
+.++++++..|.+.+.+...+
T Consensus 163 g~gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 163 ATNVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp CTTHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHhcc
Confidence 457999999998888766544
No 414
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=53.56 E-value=3.4 Score=40.82 Aligned_cols=14 Identities=7% Similarity=0.107 Sum_probs=13.0
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|||+|.||||||
T Consensus 141 QsIiiSGESGAGKT 154 (784)
T 2v26_A 141 QSIIVSGESGAGKT 154 (784)
T ss_dssp EEEEEECSTTSSHH
T ss_pred cEEEEcCCCCCCce
Confidence 47999999999999
No 415
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=53.37 E-value=3.4 Score=32.18 Aligned_cols=13 Identities=8% Similarity=0.028 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 10 ki~v~G~~~~GKS 22 (206)
T 2bcg_Y 10 KLLLIGNSGVGKS 22 (206)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 416
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=53.34 E-value=3.5 Score=31.94 Aligned_cols=13 Identities=8% Similarity=-0.056 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 10 ki~v~G~~~~GKS 22 (207)
T 1vg8_A 10 KVIILGDSGVGKT 22 (207)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 4899999999999
No 417
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=53.34 E-value=3.5 Score=31.65 Aligned_cols=13 Identities=8% Similarity=0.005 Sum_probs=12.2
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 22 ki~v~G~~~~GKS 34 (189)
T 1z06_A 22 KIIVIGDSNVGKT 34 (189)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 418
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=53.22 E-value=3.6 Score=31.95 Aligned_cols=13 Identities=8% Similarity=0.008 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 10 ki~v~G~~~~GKS 22 (203)
T 1zbd_A 10 KILIIGNSSVGKT 22 (203)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 419
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=53.17 E-value=3.6 Score=31.75 Aligned_cols=13 Identities=0% Similarity=0.051 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 23 ki~v~G~~~~GKS 35 (191)
T 2a5j_A 23 KYIIIGDTGVGKS 35 (191)
T ss_dssp EEEEESSTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 5899999999999
No 420
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=53.14 E-value=3.6 Score=31.84 Aligned_cols=13 Identities=0% Similarity=-0.028 Sum_probs=12.2
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 23 ki~vvG~~~vGKT 35 (187)
T 3c5c_A 23 NLAILGRRGAGKS 35 (187)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCcHH
Confidence 5899999999999
No 421
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=53.05 E-value=15 Score=30.18 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=24.7
Q ss_pred HHhhCC--CCcEEEECC-CHHHHHHHHHHHHHhcc
Q psy10228 182 EQEFGE--FFTAVVQGD-MPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 182 E~~~~~--~fd~vI~Nd-dleea~~~lk~iI~~~~ 213 (225)
|....+ .+|++|.|| ++++..++|..++...+
T Consensus 157 E~gL~~~~~~D~vI~Ndgt~eel~~~v~~ll~~~~ 191 (202)
T 3ch4_B 157 ECGLDNFGDFDWVIENHGVEQRLEEQLENLIEFIR 191 (202)
T ss_dssp HHTTTTCCCCSEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCcCCEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 444445 699999998 68999999988887654
No 422
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.05 E-value=3.5 Score=37.52 Aligned_cols=23 Identities=26% Similarity=0.144 Sum_probs=16.5
Q ss_pred HHhhccCCeEEEEecCCHHHHHH
Q psy10228 139 LQVASLYPVAIFIKPKSVESIME 161 (225)
Q Consensus 139 L~~~~~~Pi~IFI~pps~~~L~~ 161 (225)
|...+.+...|+|.+|+.+...+
T Consensus 304 llRpGRfD~~I~i~lPd~~~R~~ 326 (405)
T 4b4t_J 304 LLRPGRIDRKIEFPPPSVAARAE 326 (405)
T ss_dssp HHSTTSSCCEEECCCCCHHHHHH
T ss_pred HcCCCcCceEEEcCCcCHHHHHH
Confidence 33346677899999999766554
No 423
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=52.94 E-value=3.6 Score=32.28 Aligned_cols=13 Identities=15% Similarity=0.097 Sum_probs=12.2
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 9 ki~vvG~~~~GKT 21 (214)
T 2fh5_B 9 AVLFVGLCDSGKT 21 (214)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 424
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=52.90 E-value=3.7 Score=31.52 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHHHHHHhccCC
Q psy10228 195 GDMPEDIYQKVKEVIQEQSGP 215 (225)
Q Consensus 195 Nddleea~~~lk~iI~~~~~~ 215 (225)
+.++++++..|.+.+....+.
T Consensus 173 g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 173 GTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp TBTHHHHHHHHHHHHHHHC--
T ss_pred ccCHHHHHHHHHHHHHHHhcc
Confidence 457999999998888766543
No 425
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=52.87 E-value=1.7 Score=42.05 Aligned_cols=15 Identities=7% Similarity=0.018 Sum_probs=13.6
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
.+.++++||+|||||
T Consensus 155 rk~vlv~apTGSGKT 169 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKT 169 (677)
T ss_dssp CEEEEEECCTTSSHH
T ss_pred CCEEEEEcCCCCCHH
Confidence 467999999999999
No 426
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=52.81 E-value=3.6 Score=35.91 Aligned_cols=15 Identities=7% Similarity=-0.347 Sum_probs=13.8
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+..++|.||+|+|||
T Consensus 122 G~i~~I~G~~GsGKT 136 (343)
T 1v5w_A 122 MAITEAFGEFRTGKT 136 (343)
T ss_dssp SEEEEEECCTTCTHH
T ss_pred CeEEEEECCCCCCHH
Confidence 568999999999999
No 427
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=52.72 E-value=2.6 Score=38.05 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=19.9
Q ss_pred cEEEEccCCCCCC-----------------CcccCCCCC--CCCCCcceEEe
Q psy10228 52 PFMLCYTQDDPTT-----------------EDTTRARRE--YEVDGRDYHFV 84 (225)
Q Consensus 52 ~ivl~GpsgsGK~-----------------s~TTRp~R~--~E~dG~dY~FV 84 (225)
-|+|+|.+++||| +.|||.... .+.+|..+.++
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~ 56 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLI 56 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEE
Confidence 4899999999999 667776643 34456666666
No 428
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=52.70 E-value=3.6 Score=36.22 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=13.6
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|.||+|+||+
T Consensus 148 ~~~vLL~GppGtGKT 162 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKT 162 (389)
T ss_dssp CSEEEEESSTTSCHH
T ss_pred CceEEEECCCCCCHH
Confidence 457999999999999
No 429
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=52.65 E-value=3.5 Score=40.60 Aligned_cols=14 Identities=7% Similarity=0.147 Sum_probs=12.9
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|||+|.||||||
T Consensus 173 QsIiisGESGAGKT 186 (770)
T 1w9i_A 173 QSLLITGESGAGKT 186 (770)
T ss_dssp EEEEEECSTTSSHH
T ss_pred cEEEEecCCCCcch
Confidence 47999999999999
No 430
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=52.64 E-value=3.7 Score=32.10 Aligned_cols=13 Identities=15% Similarity=-0.010 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|.+|+|||
T Consensus 8 kv~lvG~~~vGKS 20 (192)
T 2cjw_A 8 RVVLIGEQGVGKS 20 (192)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 431
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=52.62 E-value=3.5 Score=40.96 Aligned_cols=14 Identities=7% Similarity=0.081 Sum_probs=12.9
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|||+|.||||||
T Consensus 170 QsIiiSGESGAGKT 183 (837)
T 1kk8_A 170 QSCLITGESGAGKT 183 (837)
T ss_dssp EEEEEECSTTSSHH
T ss_pred cEEEEeCCCCCCch
Confidence 37999999999999
No 432
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=52.57 E-value=3.6 Score=34.36 Aligned_cols=13 Identities=8% Similarity=0.010 Sum_probs=12.2
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++|.||+|+||+
T Consensus 48 ~~ll~G~~G~GKT 60 (327)
T 1iqp_A 48 HLLFAGPPGVGKT 60 (327)
T ss_dssp EEEEESCTTSSHH
T ss_pred eEEEECcCCCCHH
Confidence 5899999999999
No 433
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=52.50 E-value=3.6 Score=31.57 Aligned_cols=14 Identities=0% Similarity=-0.190 Sum_probs=12.6
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
--|+|+|++|+|||
T Consensus 9 ~ki~vvG~~~~GKS 22 (199)
T 2gf0_A 9 YRVVVFGAGGVGKS 22 (199)
T ss_dssp EEEEEEECTTSSHH
T ss_pred eEEEEECCCCCcHH
Confidence 35899999999999
No 434
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=52.48 E-value=3.6 Score=31.98 Aligned_cols=15 Identities=7% Similarity=0.078 Sum_probs=13.2
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
.--|+|+|++|+|||
T Consensus 20 ~~ki~~vG~~~vGKT 34 (196)
T 3llu_A 20 KPRILLMGLRRSGKS 34 (196)
T ss_dssp CCEEEEEESTTSSHH
T ss_pred ceEEEEECCCCCCHH
Confidence 346899999999999
No 435
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=52.42 E-value=7 Score=38.39 Aligned_cols=15 Identities=13% Similarity=-0.084 Sum_probs=13.1
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
...++|+||+|+|||
T Consensus 191 ~~~vlL~G~pG~GKT 205 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKT 205 (854)
T ss_dssp CCCCEEEECTTSCHH
T ss_pred CCceEEEcCCCCCHH
Confidence 346899999999999
No 436
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=52.34 E-value=3.7 Score=31.78 Aligned_cols=13 Identities=8% Similarity=-0.143 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 25 ki~vvG~~~~GKS 37 (192)
T 2fg5_A 25 KVCLLGDTGVGKS 37 (192)
T ss_dssp EEEEEECTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 5899999999999
No 437
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=52.27 E-value=4 Score=35.23 Aligned_cols=15 Identities=7% Similarity=-0.199 Sum_probs=13.8
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+..++|.||+|+|||
T Consensus 107 G~i~~i~G~~GsGKT 121 (324)
T 2z43_A 107 RTMTEFFGEFGSGKT 121 (324)
T ss_dssp TSEEEEEESTTSSHH
T ss_pred CcEEEEECCCCCCHh
Confidence 468999999999999
No 438
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=52.26 E-value=3 Score=31.52 Aligned_cols=13 Identities=0% Similarity=-0.153 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+++|++|+|||
T Consensus 9 ki~~vG~~~vGKT 21 (178)
T 2iwr_A 9 RLGVLGDARSGKS 21 (178)
T ss_dssp EEEEECCGGGCHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 439
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=52.25 E-value=3.6 Score=40.65 Aligned_cols=14 Identities=7% Similarity=0.107 Sum_probs=12.9
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|||+|.||||||
T Consensus 157 QsIiisGESGAGKT 170 (795)
T 1w7j_A 157 QSIIVSGESGAGKT 170 (795)
T ss_dssp EEEEEECSTTSSHH
T ss_pred eEEEEeCCCCCCcc
Confidence 47999999999999
No 440
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=52.02 E-value=3.7 Score=31.63 Aligned_cols=19 Identities=5% Similarity=0.190 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHHHhcc
Q psy10228 195 GDMPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 195 Nddleea~~~lk~iI~~~~ 213 (225)
+.++++++..|.+.+.+..
T Consensus 170 ~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 170 NISVRQAFERLVDAICDKM 188 (191)
T ss_dssp TBSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 4579999999888776543
No 441
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=52.01 E-value=5.6 Score=41.26 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=41.8
Q ss_pred CccEEEEccCCCCCCCc---ccC--CCCCC--CCCCcceEEecCHHHHHHhh---hCCcEEEEEEeCCc-cee-----ec
Q psy10228 50 QEPFMLCYTQDDPTTED---TTR--ARREY--EVDGRDYHFVSSREQMEKDI---QNHLFIEAGQYNDN-LYG-----TS 113 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~s~---TTR--p~R~~--E~dG~dY~FV~s~eef~~~i---~~~~FiE~~~~~gn-~YG-----Ts 113 (225)
++-+.|+||||||||+. =.| +|-.| .+||+|-.=+ +.+...+.| .+.-++-.+....| .|| .+
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i-~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~s 1183 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTL-NPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVT 1183 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTB-CHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhC-CHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCC
Confidence 56899999999999921 111 24445 4688876555 666665543 23333333443333 355 34
Q ss_pred HHHHHHHHHc
Q psy10228 114 VASVRDVAEK 123 (225)
Q Consensus 114 ~~sV~~v~~~ 123 (225)
-++|.++++.
T Consensus 1184 d~ei~~Al~~ 1193 (1321)
T 4f4c_A 1184 MAQVEEAARL 1193 (1321)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5566666643
No 442
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=51.96 E-value=3.6 Score=38.07 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=23.9
Q ss_pred cEEEEccCCCCCC-----------------CcccCCCCCC--CCCCcceEEe
Q psy10228 52 PFMLCYTQDDPTT-----------------EDTTRARREY--EVDGRDYHFV 84 (225)
Q Consensus 52 ~ivl~GpsgsGK~-----------------s~TTRp~R~~--E~dG~dY~FV 84 (225)
-|+|+|++++||| +.|||.+-.. +.+|..+.++
T Consensus 245 kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~ 296 (482)
T 1xzp_A 245 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIV 296 (482)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEE
T ss_pred EEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEE
Confidence 5899999999999 6788876543 3445555555
No 443
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=51.92 E-value=3 Score=34.74 Aligned_cols=14 Identities=7% Similarity=0.311 Sum_probs=12.6
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-++|.||+|+|||
T Consensus 59 n~ili~GPPGtGKT 72 (212)
T 1tue_A 59 NCLVFCGPANTGKS 72 (212)
T ss_dssp SEEEEESCGGGCHH
T ss_pred cEEEEECCCCCCHH
Confidence 35899999999999
No 444
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=51.90 E-value=3.7 Score=40.53 Aligned_cols=14 Identities=7% Similarity=0.124 Sum_probs=12.9
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|||+|.||||||
T Consensus 172 QsIiiSGESGAGKT 185 (783)
T 4db1_A 172 QSILITGESGAGKT 185 (783)
T ss_dssp EEEEEECSTTSSHH
T ss_pred ceEEEeCCCCCCCc
Confidence 46999999999999
No 445
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=51.89 E-value=3.8 Score=31.69 Aligned_cols=14 Identities=14% Similarity=-0.114 Sum_probs=12.6
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
--|+|+|++|+|||
T Consensus 21 ~ki~~~G~~~~GKs 34 (201)
T 2q3h_A 21 VKCVLVGDGAVGKT 34 (201)
T ss_dssp EEEEEECSTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 35899999999999
No 446
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=51.87 E-value=3.7 Score=37.33 Aligned_cols=13 Identities=0% Similarity=-0.092 Sum_probs=12.4
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.+.|+||+|||||
T Consensus 71 ~valvG~nGaGKS 83 (413)
T 1tq4_A 71 NVAVTGETGSGKS 83 (413)
T ss_dssp EEEEEECTTSSHH
T ss_pred EEEEECCCCCcHH
Confidence 7899999999999
No 447
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=51.86 E-value=3.9 Score=34.41 Aligned_cols=14 Identities=0% Similarity=-0.147 Sum_probs=13.1
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|.||+|+|||
T Consensus 31 ~~v~i~G~~G~GKT 44 (357)
T 2fna_A 31 PITLVLGLRRTGKS 44 (357)
T ss_dssp SEEEEEESTTSSHH
T ss_pred CcEEEECCCCCCHH
Confidence 48999999999999
No 448
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=51.83 E-value=3.9 Score=31.22 Aligned_cols=13 Identities=0% Similarity=-0.043 Sum_probs=12.2
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 17 ~i~v~G~~~~GKs 29 (195)
T 1x3s_A 17 KILIIGESGVGKS 29 (195)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 449
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=51.82 E-value=3.9 Score=37.03 Aligned_cols=14 Identities=7% Similarity=0.045 Sum_probs=13.0
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|.||+|+|||
T Consensus 168 ~~vLL~GppGtGKT 181 (444)
T 2zan_A 168 RGILLFGPPGTGKS 181 (444)
T ss_dssp SEEEEECSTTSSHH
T ss_pred ceEEEECCCCCCHH
Confidence 57999999999999
No 450
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=51.70 E-value=3.8 Score=31.88 Aligned_cols=13 Identities=8% Similarity=0.046 Sum_probs=12.3
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 31 ki~v~G~~~vGKS 43 (192)
T 2b6h_A 31 RILMVGLDAAGKT 43 (192)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 451
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=51.68 E-value=3.8 Score=31.48 Aligned_cols=14 Identities=7% Similarity=-0.088 Sum_probs=12.6
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
--|+|+|++|+|||
T Consensus 22 ~ki~v~G~~~~GKS 35 (190)
T 2h57_A 22 VHVLCLGLDNSGKT 35 (190)
T ss_dssp EEEEEEECTTSSHH
T ss_pred cEEEEECCCCCCHH
Confidence 35899999999999
No 452
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=51.66 E-value=4.5 Score=34.06 Aligned_cols=13 Identities=0% Similarity=0.074 Sum_probs=12.3
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-++++|.+|+|||
T Consensus 101 ~v~~vG~~~vGKS 113 (262)
T 3cnl_A 101 RVLIVGVPNTGKS 113 (262)
T ss_dssp EEEEEESTTSSHH
T ss_pred heEEeCCCCCCHH
Confidence 6899999999999
No 453
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=51.47 E-value=3.9 Score=32.75 Aligned_cols=14 Identities=7% Similarity=0.112 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|+|+|++|+|||
T Consensus 30 ~kI~vvG~~~vGKS 43 (228)
T 2qu8_A 30 KTIILSGAPNVGKS 43 (228)
T ss_dssp EEEEEECSTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 46899999999999
No 454
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=51.42 E-value=3.9 Score=36.40 Aligned_cols=13 Identities=8% Similarity=-0.197 Sum_probs=12.6
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
+.+|+||+|||||
T Consensus 28 ~~~i~G~nG~GKt 40 (359)
T 2o5v_A 28 VTGIYGENGAGKT 40 (359)
T ss_dssp EEEEECCTTSSHH
T ss_pred eEEEECCCCCChh
Confidence 8899999999999
No 455
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=51.39 E-value=4 Score=31.65 Aligned_cols=13 Identities=8% Similarity=0.036 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 28 ki~vvG~~~~GKS 40 (192)
T 2il1_A 28 QVIIIGSRGVGKT 40 (192)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 456
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=51.37 E-value=3.9 Score=36.04 Aligned_cols=14 Identities=0% Similarity=0.029 Sum_probs=12.4
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-++|+||||||||
T Consensus 36 ~~~~i~G~~G~GKs 49 (392)
T 4ag6_A 36 SNWTILAKPGAGKS 49 (392)
T ss_dssp CCEEEECCTTSSHH
T ss_pred CceEEEcCCCCCHH
Confidence 35799999999999
No 457
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=51.33 E-value=3.9 Score=31.33 Aligned_cols=13 Identities=8% Similarity=0.087 Sum_probs=12.2
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 18 ~i~v~G~~~~GKs 30 (187)
T 1zj6_A 18 KVIIVGLDNAGKT 30 (187)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 458
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=51.33 E-value=4 Score=31.77 Aligned_cols=14 Identities=7% Similarity=-0.083 Sum_probs=12.6
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|+|+|++|+|||
T Consensus 29 ~ki~v~G~~~~GKS 42 (199)
T 2p5s_A 29 YKIVLAGDAAVGKS 42 (199)
T ss_dssp EEEEEESSTTSSHH
T ss_pred eEEEEECcCCCCHH
Confidence 35899999999999
No 459
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=51.20 E-value=4 Score=31.46 Aligned_cols=19 Identities=11% Similarity=0.150 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHHHhcc
Q psy10228 195 GDMPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 195 Nddleea~~~lk~iI~~~~ 213 (225)
+.++++++..|.+.+....
T Consensus 172 ~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 172 KIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp TBSHHHHHHHHHHHHHCSC
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 4579999999888776553
No 460
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=51.18 E-value=4 Score=31.60 Aligned_cols=13 Identities=0% Similarity=-0.113 Sum_probs=12.2
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 30 ki~v~G~~~vGKS 42 (196)
T 2atv_A 30 KLAIFGRAGVGKS 42 (196)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 461
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=51.16 E-value=4.3 Score=34.96 Aligned_cols=15 Identities=7% Similarity=0.018 Sum_probs=14.0
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+.+++|.|++|+|||
T Consensus 68 G~l~li~G~pG~GKT 82 (315)
T 3bh0_A 68 RNFVLIAARPSMGKT 82 (315)
T ss_dssp TCEEEEECCTTSSHH
T ss_pred CcEEEEEeCCCCCHH
Confidence 569999999999999
No 462
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=51.02 E-value=3.9 Score=41.71 Aligned_cols=14 Identities=7% Similarity=0.107 Sum_probs=13.0
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|||+|.||||||
T Consensus 145 QsIiiSGESGAGKT 158 (1052)
T 4anj_A 145 QSIIVSGESGAGKT 158 (1052)
T ss_dssp EEEEEECSTTSSHH
T ss_pred ceEEEecCCCCCHH
Confidence 47999999999998
No 463
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=50.86 E-value=4.1 Score=31.72 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHhccCCceee
Q psy10228 195 GDMPEDIYQKVKEVIQEQSGPSIWV 219 (225)
Q Consensus 195 Nddleea~~~lk~iI~~~~~~~~WV 219 (225)
+.++++++..|...+.+......|.
T Consensus 166 ~~gi~~l~~~l~~~~~~~~~~~~~~ 190 (213)
T 3cph_A 166 DDNVNEIFFTLAKLIQEKIDSNKLV 190 (213)
T ss_dssp TBSSHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcc
Confidence 3478888888888777665555565
No 464
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=50.74 E-value=3.9 Score=41.35 Aligned_cols=14 Identities=7% Similarity=0.022 Sum_probs=12.9
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|||+|.||||||
T Consensus 147 QsIiisGESGAGKT 160 (995)
T 2ycu_A 147 QSILCTGESGAGKT 160 (995)
T ss_dssp EEEEEECBTTSSHH
T ss_pred cEEEecCCCCCCch
Confidence 47999999999999
No 465
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=50.74 E-value=4 Score=31.90 Aligned_cols=13 Identities=8% Similarity=0.189 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 27 ki~v~G~~~~GKS 39 (200)
T 2o52_A 27 KFLVIGSAGTGKS 39 (200)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 5899999999999
No 466
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=50.72 E-value=4.9 Score=31.31 Aligned_cols=14 Identities=7% Similarity=-0.071 Sum_probs=12.6
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
+-+++.+|+|+|||
T Consensus 39 ~~~li~~~TGsGKT 52 (207)
T 2gxq_A 39 KDLIGQARTGTGKT 52 (207)
T ss_dssp CCEEEECCTTSCHH
T ss_pred CCEEEECCCCChHH
Confidence 35899999999999
No 467
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=50.65 E-value=3.9 Score=41.48 Aligned_cols=14 Identities=7% Similarity=0.147 Sum_probs=12.9
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|||+|.||||||
T Consensus 173 QsIiisGESGAGKT 186 (1010)
T 1g8x_A 173 QSLLITGESGAGKT 186 (1010)
T ss_dssp EEEEEEESTTSSHH
T ss_pred eEEEEeCCCCCCcc
Confidence 47999999999999
No 468
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=50.57 E-value=4.2 Score=31.34 Aligned_cols=13 Identities=23% Similarity=0.028 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 24 ki~v~G~~~~GKS 36 (188)
T 1zd9_A 24 ELTLVGLQYSGKT 36 (188)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 469
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=50.53 E-value=4.1 Score=34.88 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=12.6
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|.||+|+|||
T Consensus 39 ~~~ll~G~~G~GKT 52 (373)
T 1jr3_A 39 HAYLFSGTRGVGKT 52 (373)
T ss_dssp SEEEEESCTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 36899999999999
No 470
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=50.51 E-value=4.4 Score=38.63 Aligned_cols=16 Identities=13% Similarity=-0.087 Sum_probs=14.4
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 381 ~Gei~~i~G~NGsGKS 396 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKT 396 (607)
T ss_dssp TTCEEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3578999999999999
No 471
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=50.49 E-value=4.6 Score=35.24 Aligned_cols=14 Identities=0% Similarity=-0.012 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|+|++|+|||
T Consensus 168 ~~v~lvG~~gvGKS 181 (357)
T 2e87_A 168 PTVVIAGHPNVGKS 181 (357)
T ss_dssp CEEEEECSTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 46899999999999
No 472
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=50.46 E-value=3.8 Score=31.28 Aligned_cols=14 Identities=7% Similarity=0.090 Sum_probs=12.6
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
--|+++|++|+|||
T Consensus 22 ~~i~v~G~~~~GKS 35 (181)
T 2h17_A 22 HKVIIVGLDNAGKT 35 (181)
T ss_dssp EEEEEEEETTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 35899999999999
No 473
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=50.45 E-value=1.9 Score=38.11 Aligned_cols=28 Identities=0% Similarity=-0.116 Sum_probs=18.8
Q ss_pred ccccccccCCCCCCCCCCccEEEEccCCCCCC
Q psy10228 33 KFPFMKSKDDKSEDGSDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~ivl~GpsgsGK~ 64 (225)
.|.-++..+. +-+.+ .++|+||+|||||
T Consensus 47 nf~~l~~v~l---~~~~G-~~~lvG~NGaGKS 74 (415)
T 4aby_A 47 NLATITQLEL---ELGGG-FCAFTGETGAGKS 74 (415)
T ss_dssp EETTEEEEEE---ECCSS-EEEEEESHHHHHH
T ss_pred cccceeeEEE---ecCCC-cEEEECCCCCCHH
Confidence 3444544332 23345 8999999999999
No 474
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=50.41 E-value=4.6 Score=39.84 Aligned_cols=17 Identities=0% Similarity=0.032 Sum_probs=14.8
Q ss_pred CCCccEEEEccCCCCCC
Q psy10228 48 SDQEPFMLCYTQDDPTT 64 (225)
Q Consensus 48 ~~~~~ivl~GpsgsGK~ 64 (225)
..++.++|+||+|+|||
T Consensus 605 ~~g~i~~ItGpNGsGKS 621 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKS 621 (800)
T ss_dssp SSSCEEEEECCTTSSHH
T ss_pred CCCcEEEEECCCCCChH
Confidence 34578999999999999
No 475
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=50.37 E-value=4.5 Score=35.23 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=13.7
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
.+.|.++||+|+|||
T Consensus 105 ~~vI~ivG~~G~GKT 119 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKT 119 (320)
T ss_dssp CEEEEEESSTTSSHH
T ss_pred CeEEEEECCCCCCHH
Confidence 568999999999999
No 476
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=50.31 E-value=4.4 Score=37.87 Aligned_cols=16 Identities=13% Similarity=-0.087 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||+|||||
T Consensus 311 ~Ge~~~i~G~NGsGKS 326 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKT 326 (538)
T ss_dssp TTCEEEEECCTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3578999999999999
No 477
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=50.25 E-value=4.1 Score=36.90 Aligned_cols=14 Identities=14% Similarity=0.124 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-++|.||+|+|||
T Consensus 64 ~~iLl~GppGtGKT 77 (456)
T 2c9o_A 64 RAVLLAGPPGTGKT 77 (456)
T ss_dssp CEEEEECCTTSSHH
T ss_pred CeEEEECCCcCCHH
Confidence 45999999999999
No 478
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=50.23 E-value=4.4 Score=42.05 Aligned_cols=16 Identities=6% Similarity=-0.029 Sum_probs=14.3
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.++.+.|+||||||||
T Consensus 443 ~G~~vaivG~sGsGKS 458 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKS 458 (1321)
T ss_dssp TTCEEEEEECSSSCHH
T ss_pred CCcEEEEEecCCCcHH
Confidence 3568999999999999
No 479
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=50.22 E-value=4.4 Score=36.98 Aligned_cols=16 Identities=6% Similarity=-0.103 Sum_probs=14.1
Q ss_pred CCccEEEEccCCCCCC
Q psy10228 49 DQEPFMLCYTQDDPTT 64 (225)
Q Consensus 49 ~~~~ivl~GpsgsGK~ 64 (225)
.+..+.|+||||||||
T Consensus 156 ~Gq~~~IvG~sGsGKS 171 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKS 171 (438)
T ss_dssp TTCEEEEEECTTSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3568999999999999
No 480
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=50.16 E-value=4.1 Score=41.62 Aligned_cols=14 Identities=7% Similarity=0.107 Sum_probs=13.0
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|||+|.||||||
T Consensus 157 QsIiisGESGAGKT 170 (1080)
T 2dfs_A 157 QSIIVSGESGAGKT 170 (1080)
T ss_dssp EEEEEECSTTSSHH
T ss_pred cEEEEcCCCCCCcc
Confidence 47999999999999
No 481
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=50.14 E-value=4.2 Score=33.89 Aligned_cols=13 Identities=8% Similarity=-0.038 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++|.||+|+||+
T Consensus 44 ~~ll~G~~G~GKt 56 (323)
T 1sxj_B 44 HMIISGMPGIGKT 56 (323)
T ss_dssp CEEEECSTTSSHH
T ss_pred eEEEECcCCCCHH
Confidence 3899999999999
No 482
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=50.08 E-value=4.2 Score=31.69 Aligned_cols=13 Identities=8% Similarity=-0.179 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 26 ki~vvG~~~~GKS 38 (201)
T 3oes_A 26 KVVILGYRCVGKT 38 (201)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCcCHH
Confidence 4899999999999
No 483
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=49.96 E-value=2.6 Score=35.50 Aligned_cols=13 Identities=15% Similarity=0.015 Sum_probs=12.0
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|.+|+|||
T Consensus 5 ~I~lvG~~n~GKS 17 (274)
T 3i8s_A 5 TIGLIGNPNSGKT 17 (274)
T ss_dssp EEEEEECTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4889999999999
No 484
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=49.94 E-value=4.2 Score=34.79 Aligned_cols=15 Identities=13% Similarity=-0.121 Sum_probs=13.8
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
+..++|.||+|+|||
T Consensus 98 g~i~~i~G~~gsGKT 112 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKT 112 (322)
T ss_dssp TEEEEEEESTTSSHH
T ss_pred CeEEEEECCCCCCHH
Confidence 468999999999999
No 485
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=49.70 E-value=5.1 Score=31.97 Aligned_cols=14 Identities=7% Similarity=0.045 Sum_probs=12.6
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
+-+++++|+|+|||
T Consensus 58 ~~~l~~apTGsGKT 71 (228)
T 3iuy_A 58 IDLIVVAQTGTGKT 71 (228)
T ss_dssp CCEEEECCTTSCHH
T ss_pred CCEEEECCCCChHH
Confidence 45899999999999
No 486
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=49.68 E-value=4.3 Score=32.14 Aligned_cols=13 Identities=15% Similarity=-0.013 Sum_probs=12.2
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 28 ki~lvG~~~vGKS 40 (201)
T 2ew1_A 28 KIVLIGNAGVGKT 40 (201)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 5799999999999
No 487
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=49.67 E-value=4 Score=31.26 Aligned_cols=13 Identities=8% Similarity=0.049 Sum_probs=12.2
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+++|++|+|||
T Consensus 24 ~i~v~G~~~~GKs 36 (189)
T 2x77_A 24 RVLMLGLDNAGKT 36 (189)
T ss_dssp EEEEEEETTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 488
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=49.67 E-value=4.6 Score=39.67 Aligned_cols=15 Identities=7% Similarity=0.029 Sum_probs=14.2
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
++.++|+||+|||||
T Consensus 576 g~i~~I~GpNGsGKS 590 (765)
T 1ewq_A 576 HELVLITGPNMAGKS 590 (765)
T ss_dssp SCEEEEESCSSSSHH
T ss_pred CcEEEEECCCCCChH
Confidence 679999999999999
No 489
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=49.64 E-value=4.4 Score=41.57 Aligned_cols=14 Identities=7% Similarity=0.022 Sum_probs=12.9
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
.-|||+|.||||||
T Consensus 170 Q~i~isGeSGaGKT 183 (1184)
T 1i84_S 170 QSILCTGESGAGKT 183 (1184)
T ss_dssp EEEECCCSTTSSTT
T ss_pred cEEEEecCCCCCcc
Confidence 47999999999999
No 490
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=49.64 E-value=2.9 Score=35.65 Aligned_cols=14 Identities=14% Similarity=-0.052 Sum_probs=13.0
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|.||+|+|||
T Consensus 47 ~~vll~G~pGtGKT 60 (331)
T 2r44_A 47 GHILLEGVPGLAKT 60 (331)
T ss_dssp CCEEEESCCCHHHH
T ss_pred CeEEEECCCCCcHH
Confidence 47999999999999
No 491
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=49.63 E-value=7.1 Score=35.02 Aligned_cols=14 Identities=21% Similarity=0.045 Sum_probs=12.7
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
+.++++||+|||||
T Consensus 3 ~~~lv~a~TGsGKT 16 (431)
T 2v6i_A 3 ELTVLDLHPGAGKT 16 (431)
T ss_dssp CEEEEECCTTSCTT
T ss_pred CEEEEEcCCCCCHH
Confidence 56899999999999
No 492
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=49.58 E-value=4.5 Score=33.97 Aligned_cols=14 Identities=7% Similarity=-0.140 Sum_probs=13.2
Q ss_pred ccEEEEccCCCCCC
Q psy10228 51 EPFMLCYTQDDPTT 64 (225)
Q Consensus 51 ~~ivl~GpsgsGK~ 64 (225)
..++|+||.|+|||
T Consensus 32 ~~v~i~G~~G~GKT 45 (350)
T 2qen_A 32 PLTLLLGIRRVGKS 45 (350)
T ss_dssp SEEEEECCTTSSHH
T ss_pred CeEEEECCCcCCHH
Confidence 58999999999999
No 493
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=49.38 E-value=4.3 Score=37.02 Aligned_cols=13 Identities=15% Similarity=0.117 Sum_probs=12.3
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
.++|.||+|+|||
T Consensus 52 ~vLL~GppGtGKT 64 (447)
T 3pvs_A 52 SMILWGPPGTGKT 64 (447)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCcHH
Confidence 6899999999999
No 494
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=49.33 E-value=4.3 Score=32.13 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHHhcc
Q psy10228 195 GDMPEDIYQKVKEVIQEQS 213 (225)
Q Consensus 195 Nddleea~~~lk~iI~~~~ 213 (225)
+.++++++..|...+.+..
T Consensus 193 g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 193 HDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TBSHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 4579999999888876543
No 495
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=49.30 E-value=5.1 Score=35.73 Aligned_cols=13 Identities=0% Similarity=-0.164 Sum_probs=11.8
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-+.|+|++|+|||
T Consensus 3 ~v~IVG~pnvGKS 15 (368)
T 2dby_A 3 AVGIVGLPNVGKS 15 (368)
T ss_dssp SEEEECCSSSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3789999999999
No 496
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=49.26 E-value=4.4 Score=33.73 Aligned_cols=13 Identities=15% Similarity=0.005 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 5 ~i~lvG~~g~GKT 17 (271)
T 3k53_A 5 TVALVGNPNVGKT 17 (271)
T ss_dssp EEEEEECSSSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4899999999999
No 497
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=49.19 E-value=4.4 Score=31.79 Aligned_cols=13 Identities=8% Similarity=-0.067 Sum_probs=12.2
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 27 ki~vvG~~~~GKS 39 (207)
T 2fv8_A 27 KLVVVGDGACGKT 39 (207)
T ss_dssp EEEEEECTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 4899999999999
No 498
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=48.92 E-value=4.5 Score=31.11 Aligned_cols=13 Identities=8% Similarity=-0.130 Sum_probs=12.1
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+++|++|+|||
T Consensus 20 ki~v~G~~~~GKs 32 (194)
T 2atx_A 20 KCVVVGDGAVGKT 32 (194)
T ss_dssp EEEEEECTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 499
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=48.78 E-value=4.5 Score=32.06 Aligned_cols=13 Identities=8% Similarity=-0.031 Sum_probs=12.2
Q ss_pred cEEEEccCCCCCC
Q psy10228 52 PFMLCYTQDDPTT 64 (225)
Q Consensus 52 ~ivl~GpsgsGK~ 64 (225)
-|+|+|++|+|||
T Consensus 30 ki~vvG~~~vGKS 42 (205)
T 1gwn_A 30 KIVVVGDSQCGKT 42 (205)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 500
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=48.34 E-value=4.5 Score=37.03 Aligned_cols=15 Identities=27% Similarity=0.067 Sum_probs=13.8
Q ss_pred CccEEEEccCCCCCC
Q psy10228 50 QEPFMLCYTQDDPTT 64 (225)
Q Consensus 50 ~~~ivl~GpsgsGK~ 64 (225)
..+|+++||+|||||
T Consensus 97 ~~vI~lvG~~GsGKT 111 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKT 111 (433)
T ss_dssp SEEEEECCCTTSCHH
T ss_pred CeEEEEECCCCCCHH
Confidence 568999999999999
Done!