RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10228
(225 letters)
>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase.
Length = 183
Score = 181 bits (462), Expect = 3e-58
Identities = 62/148 (41%), Positives = 94/148 (63%), Gaps = 3/148 (2%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR R EVDG+DYHFVS +E+ME DI + F+E ++N N YGTS ++ +AE GK
Sbjct: 37 TTRPPRPGEVDGKDYHFVS-KEEMENDISANEFLEYAEFNGNYYGTSKEAIEQIAESGKI 95
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
CILDV +K+L+ A L P+++FIKP S++ + KR EQ +K+ R EQEF
Sbjct: 96 CILDVDIQGVKQLRKAELSPISVFIKPPSLKVLQRRLKRRGTEQEEKINKRMEAAEQEFQ 155
Query: 187 EF--FTAVVQGDMPEDIYQKVKEVIQEQ 212
+ F ++ D ++ Y+K+KE+++ +
Sbjct: 156 HYALFDYIIVNDDLDEAYKKLKEILEAE 183
>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues. Active enzymes
catalyze ATP-dependent phosphorylation of GMP to GDP.
Structure resembles that of adenylate kinase. So-called
membrane-associated guanylate kinase homologues (MAGUKs)
do not possess guanylate kinase activities; instead at
least some possess protein-binding functions.
Length = 174
Score = 160 bits (407), Expect = 5e-50
Identities = 62/148 (41%), Positives = 94/148 (63%), Gaps = 3/148 (2%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR R EV+G DYHFVS +E+ E DI++ LF+E G+Y N YGTS ++R VAEKGKH
Sbjct: 27 TTRPPRPGEVNGVDYHFVS-KEEFEDDIKSGLFLEWGEYEGNYYGTSKETIRQVAEKGKH 85
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
C+LD+ +K+L+ A LYP+ IFI P S E + ++ E ++++ R ++E
Sbjct: 86 CLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRQRGTETSERIQKRLAAAQKEAQ 145
Query: 187 E--FFTAVVQGDMPEDIYQKVKEVIQEQ 212
E F V+ D ED Y+++KE+++ +
Sbjct: 146 EYHLFDYVIVNDDLEDAYEELKEILEAE 173
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 94.9 bits (237), Expect = 5e-25
Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR R EVDG DYHFVS +E+ E+ I+N F+E +++ N YGTS A+V + +GK
Sbjct: 34 TTRKPRPGEVDGVDYHFVS-KEEFERLIENGEFLEWAEFHGNYYGTSKAAVEEALAEGKI 92
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKP 153
IL++ ++++ + V+IFI P
Sbjct: 93 VILEIDVQGARQVKKSYPDAVSIFILP 119
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP kinase.
This enzyme transfers a phosphate from ATP to GMP,
yielding ADP and GDP [Purines, pyrimidines, nucleosides,
and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 94.1 bits (235), Expect = 4e-24
Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 19/155 (12%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR R EVDG DY FVS +E+ E+ I+ F+E + + N YGT + V + GK
Sbjct: 34 TTRKPRPGEVDGVDYFFVS-KEEFEEMIKAGEFLEWAEVHGNYYGTPKSPVEEALAAGKD 92
Query: 127 CIL--DVSGNAIKRLQVASLYP--VAIFIKPKSVESIMEMNKRM------TEEQAKKMYD 176
+L DV G QV +P V+IFI P S+E E+ +R+ +EE ++
Sbjct: 93 VLLEIDVQG----ARQVKKKFPDAVSIFILPPSLE---ELERRLRKRGTDSEEVIERRLA 145
Query: 177 RSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQE 211
++ K E + F V+ D E +++K +I
Sbjct: 146 KA-KKEIAHADEFDYVIVNDDLEKAVEELKSIILA 179
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 92.8 bits (232), Expect = 2e-23
Identities = 43/105 (40%), Positives = 57/105 (54%), Gaps = 12/105 (11%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTRA R EVDG DY FVS +E+ E+ I+N F+E + N YGT + V + GK
Sbjct: 39 TTRAPRPGEVDGVDYFFVS-KEEFEEMIENGEFLEWAEVFGNYYGTPRSPVEEALAAGKD 97
Query: 127 CIL--DVSGNAIKRLQVASLYP--VAIFIKPKSVESIMEMNKRMT 167
+L D G A QV P V+IFI P S+E E+ +R+
Sbjct: 98 VLLEIDWQG-A---RQVKKKMPDAVSIFILPPSLE---ELERRLR 135
>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase.
Length = 398
Score = 96.1 bits (239), Expect = 3e-23
Identities = 58/152 (38%), Positives = 88/152 (57%), Gaps = 14/152 (9%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTRA RE E DG YHF + R MEK+I++ F+E + NLYGTS+ +V V + GK
Sbjct: 170 TTRAPREMEKDGVHYHF-TERSVMEKEIKDGKFLEFASVHGNLYGTSIEAVEVVTDSGKR 228
Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRM------TEEQAKKMYDRSMK 180
CILD+ + ++ +SL + IFI P S+E E+ KR+ TEEQ +K R+ +
Sbjct: 229 CILDIDVQGARSVRASSLEAIFIFICPPSME---ELEKRLRARGTETEEQIQKRL-RNAE 284
Query: 181 MEQEFGE---FFTAVVQGDMPEDIYQKVKEVI 209
E E G+ F ++ D E+ Y+ +K+++
Sbjct: 285 AELEQGKSSGIFDHILYNDNLEECYKNLKKLL 316
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 88.4 bits (220), Expect = 7e-22
Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 7/149 (4%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR R EVDG DY FV+ E+ E+ I+ F+E +Y+ N YGTS V +GK
Sbjct: 37 TTRKPRPGEVDGVDYFFVT-EEEFEELIERDEFLEWAEYHGNYYGTSREPVEQALAEGKD 95
Query: 127 CILDVSGNAIKRLQVASLYP--VAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQE 184
ILD+ LQV P V+IFI P S+E + K + + + R ++E
Sbjct: 96 VILDIDVQGA--LQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKE 153
Query: 185 FGE--FFTAVVQGDMPEDIYQKVKEVIQE 211
F V+ D E +++K +I
Sbjct: 154 ISHADEFDYVIVNDDLEKALEELKSIILA 182
>gnl|CDD|237809 PRK14738, gmk, guanylate kinase; Provisional.
Length = 206
Score = 61.3 bits (149), Expect = 1e-11
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTR +R E+DG DYHFV + E+ + I + +E + N YG A VR G+
Sbjct: 47 TTRPKRPGEIDGVDYHFV-TPEEFREMISQNELLEWAEVYGNYYGVPKAPVRQALASGRD 105
Query: 127 CIL--DVSGNA-IKRLQVASLYPVAIFIKPKSVESIM-EMNKRMTE 168
I+ DV G A IKRL + V IF+ P S++ + + R TE
Sbjct: 106 VIVKVDVQGAASIKRLVPEA---VFIFLAPPSMDELTRRLELRRTE 148
>gnl|CDD|173199 PRK14737, gmk, guanylate kinase; Provisional.
Length = 186
Score = 52.7 bits (126), Expect = 1e-08
Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 8/148 (5%)
Query: 67 TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
TTRA R + +G+ Y F++ E+ +K I + F+E + +DN YGT A + D ++G+
Sbjct: 38 TTRAPRPGDEEGKTYFFLT-IEEFKKGIADGEFLEWAEVHDNYYGTPKAFIEDAFKEGRS 96
Query: 127 CILDVSGNAIKRLQVASLYP---VAIFIKPKSVES-IMEMNKRMTE-EQAKKMYDRSMKM 181
I+D+ K + +P V IFI+P S E + R T+ E++ + + +
Sbjct: 97 AIMDIDVQGAK--IIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGII 154
Query: 182 EQEFGEFFTAVVQGDMPEDIYQKVKEVI 209
E + F + D ED ++ +I
Sbjct: 155 ELDEANEFDYKIINDDLEDAIADLEAII 182
>gnl|CDD|189013 cd09606, M3B_PepF_1, Peptidase family M3B Oligopeptidase F (PepF).
Peptidase family M3B Oligopeptidase F (PepF;
Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and
includes oligoendopeptidase F from Lactococcus lactis.
This enzyme hydrolyzes peptides containing between 7 and
17 amino acids with fairly broad specificity. The PepF
gene is duplicated in L. lactis on the plasmid that
bears it, while a shortened second copy is found in
Bacillus subtilis. Most bacterial PepFs are cytoplasmic
endopeptidases; however, the PepF Bacillus
amyloliquefaciens oligopeptidase is a secreted protein
and may facilitate the process of sporulation.
Specifically, the yjbG gene encoding the homolog of the
PepF1 and PepF2 oligoendopeptidases of Lactococcus
lactis has been identified in Bacillus subtilis as an
inhibitor of sporulation initiation when over expressed
from a multicopy plasmid.
Length = 546
Score = 30.6 bits (70), Expect = 0.74
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 137 KRLQVASLYP--VAIFIK---PKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGEFFTA 191
KRL + L P ++ PK E+ E+AKKMY + E GEFF
Sbjct: 250 KRLGLDKLRPWDESVDFPGGNPKPFGDADEL-----VEKAKKMYKE---LSPETGEFFDF 301
Query: 192 VVQGDM 197
+ + +
Sbjct: 302 MRENGL 307
>gnl|CDD|237405 PRK13508, PRK13508, tagatose-6-phosphate kinase; Provisional.
Length = 309
Score = 29.3 bits (66), Expect = 1.5
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 117 VRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEE 169
+ + GK +LD SG A++ + + P IKP E + K ++E+
Sbjct: 149 IELANQAGKPVVLDCSGAALQAVLESPYKPTV--IKPNIEELSQLLGKEVSED 199
>gnl|CDD|185039 PRK15081, PRK15081, glutathione ABC transporter permease GsiC;
Provisional.
Length = 306
Score = 29.3 bits (66), Expect = 1.6
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 181 MEQEFGEFFTAVVQGDMPEDIYQK--VKEVIQEQSGPSIWV 219
+ +F + + +QGD + + V E I + P++W+
Sbjct: 61 LPHQFWHYISNALQGDFGTSMVSRRPVSEEIASRFMPTLWL 101
>gnl|CDD|222378 pfam13785, DUF4178, Domain of unknown function (DUF4178).
Length = 139
Score = 28.0 bits (63), Expect = 2.5
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 45 EDGSDQEPFMLCYTQDDPTTEDTTRARREYEVDGRDYHFVSS 86
+DG + +T+ E E+DG+ Y S
Sbjct: 48 DDGDLELAL---WTKVPGRDVGPDPPPTEIELDGKRYRLDES 86
>gnl|CDD|235216 PRK04057, PRK04057, 30S ribosomal protein S3Ae; Validated.
Length = 203
Score = 28.3 bits (64), Expect = 2.7
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 172 KKMYD--RSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEV 208
K M + E F EF +V G + +IY++ K++
Sbjct: 132 KIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAKKI 170
>gnl|CDD|221575 pfam12437, GSIII_N, Glutamine synthetase type III N terminal. This
domain family is found in bacteria and eukaryotes, and
is approximately 160 amino acids in length. The family
is found in association with pfam00120. This family is
the N terminal region of glutamine synthetase type III
which is one of the enzymes responsible for generation
of glutamine through conversion glutamate to glutamine
by the incorporation of ammonia (NH3).
Length = 162
Score = 27.8 bits (63), Expect = 3.4
Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 179 MKMEQEFGE--FFTAVVQGDMPEDIYQKVKEVIQE 211
K+ + FG F V++ +P+D+Y+ +K+ I++
Sbjct: 1 SKLSEIFGSNVFNDKVMKERLPKDVYKALKKTIEK 35
>gnl|CDD|225619 COG3077, RelB, DNA-damage-inducible protein J [DNA replication,
recombination, and repair].
Length = 88
Score = 26.9 bits (60), Expect = 3.5
Identities = 6/33 (18%), Positives = 17/33 (51%)
Query: 62 PTTEDTTRARREYEVDGRDYHFVSSREQMEKDI 94
P+ +T +A +E + G+ + + + +D+
Sbjct: 54 PSNAETLQAIKELDKAGKGVEVSKTVDDLLEDL 86
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 27.2 bits (61), Expect = 4.6
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 166 MTEEQAKKMYDRSMKMEQEFGEFFTA------VVQGDMPEDIYQKVKEVIQE 211
++EE K + +QE + A Q ++ + IY K+ + I+E
Sbjct: 72 LSEEARKAKQQELQQKQQELQQKQQAAQQELQQKQQELLQPIYDKIDKAIKE 123
>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine
triphosphatases (GTPases). The Ras family of the Ras
superfamily includes classical N-Ras, H-Ras, and K-Ras,
as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG,
Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins.
Ras proteins regulate cell growth, proliferation and
differentiation. Ras is activated by guanine nucleotide
exchange factors (GEFs) that release GDP and allow GTP
binding. Many RasGEFs have been identified. These are
sequestered in the cytosol until activation by growth
factors triggers recruitment to the plasma membrane or
Golgi, where the GEF colocalizes with Ras. Active
GTP-bound Ras interacts with several effector proteins:
among the best characterized are the Raf kinases,
phosphatidylinositol 3-kinase (PI3K), RalGEFs and
NORE/MST1. Most Ras proteins contain a lipid
modification site at the C-terminus, with a typical
sequence motif CaaX, where a = an aliphatic amino acid
and X = any amino acid. Lipid binding is essential for
membrane attachment, a key feature of most Ras
proteins. Due to the presence of truncated sequences in
this CD, the lipid modification site is not available
for annotation.
Length = 160
Score = 27.1 bits (61), Expect = 4.8
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 61 DPTTEDTTRARREYEVDGRDYHF 83
DPT ED+ R ++ VDG Y
Sbjct: 29 DPTIEDSYR--KQIVVDGETYTL 49
>gnl|CDD|237978 cd00006, PTS_IIA_man, PTS_IIA, PTS system, mannose/sorbose specific
IIA subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein
system involved in the regulation of a variety of
metabolic and transcriptional processes. This family is
one of four structurally and functionally distinct group
IIA PTS system cytoplasmic enzymes, necessary for the
uptake of carbohydrates across the cytoplasmic membrane
and their phosphorylation. IIA subunits receive
phosphoryl groups from HPr and transfer them to IIB
subunits, which in turn phosphorylate the substrate.
Length = 122
Score = 26.8 bits (60), Expect = 5.7
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 171 AKKMYDRSMKM---EQEFGEFFTAVVQGDMPEDIYQKVKEVIQE 211
A + + S +M EQE E P+D+ +K+K + E
Sbjct: 12 ASGLLN-SAEMILGEQENVEAIDFPPGES-PDDLLEKIKAALAE 53
>gnl|CDD|224664 COG1750, COG1750, Archaeal serine proteases [General function
prediction only].
Length = 579
Score = 27.8 bits (62), Expect = 5.9
Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 18/96 (18%)
Query: 105 YNDNLYGTSVASVRDVAEKGKHCILDVSG-------------NAIKRLQVASLYPVAIFI 151
Y D Y ++AS R G+ +L+ I + + PV
Sbjct: 428 YEDGNYSAALASARAAIAIGEF-LLESFYEDDKESITREAAFIKIGLAENSGDQPVL--- 483
Query: 152 KPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFGE 187
+ E + A Y + ++ GE
Sbjct: 484 -ALAYYEYAENGQLQDTINAAAYYKDASELALLMGE 518
>gnl|CDD|222797 PHA00452, PHA00452, T3/T7-like RNA polymerase.
Length = 807
Score = 27.3 bits (61), Expect = 8.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 190 TAVVQGDMPEDIYQKVKEVIQEQ 212
++ D P+DIY V EV+ E+
Sbjct: 524 VNLLPSDKPQDIYGIVAEVVNEK 546
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.371
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,152,553
Number of extensions: 1008102
Number of successful extensions: 1210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1194
Number of HSP's successfully gapped: 44
Length of query: 225
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 132
Effective length of database: 6,812,680
Effective search space: 899273760
Effective search space used: 899273760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)