RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10228
         (225 letters)



>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 199

 Score =  108 bits (269), Expect = 7e-30
 Identities = 109/159 (68%), Positives = 140/159 (88%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR +REYE+DGRDYHFVSSRE+MEKDIQ H FIEAGQYN +LYGTSV SVR+VAE+GKH
Sbjct: 41  TTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKH 100

Query: 127 CILDVSGNAIKRLQVASLYPVAIFIKPKSVESIMEMNKRMTEEQAKKMYDRSMKMEQEFG 186
           CILDVS NA++RLQ A L+P+AIFI+P+S+E+++E+NKR+TEEQA+K +DR+ K+EQEF 
Sbjct: 101 CILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFT 160

Query: 187 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWVPSKDPL 225
           E F+A+V+GD  E+IY KVK VI++ SGP IWVP+++ L
Sbjct: 161 ECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARERL 199


>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
           562]}
          Length = 205

 Score = 61.4 bits (148), Expect = 3e-12
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 3/148 (2%)

Query: 67  TTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDNLYGTSVASVRDVAEKGKH 126
           TTR  R  EV G  Y FV+  E  E   ++     A +   N YGTS  ++  V   G  
Sbjct: 38  TTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHA-EVFGNYYGTSREAIEQVLATGVD 96

Query: 127 CILDVSGNAIKRL-QVASLYPVAIFIKPKSVESIMEMNKRMTE-EQAKKMYDRSMKMEQE 184
             LD+     +++ Q          + P  +E    +  R  + E+           E  
Sbjct: 97  VFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMS 156

Query: 185 FGEFFTAVVQGDMPEDIYQKVKEVIQEQ 212
               +  ++  D  +     +K +I+ +
Sbjct: 157 HYAEYDYLIVNDDFDTALTDLKTIIRAE 184


>d2fr2a1 b.60.1.8 (A:4-164) Hypothetical protein Rv2717c
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 161

 Score = 28.3 bits (63), Expect = 0.57
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 62  PTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHL 98
           PT ++ T   R Y +DG +  +      + + +Q+HL
Sbjct: 117 PTAKEVTALDRSYRIDGDELSYSLQMRAVGQPLQDHL 153


>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase
           oxygenase subunit TouA {Pseudomonas stutzeri [TaxId:
           316]}
          Length = 491

 Score = 26.8 bits (59), Expect = 2.3
 Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 4/31 (12%)

Query: 55  LCYTQDDPTTEDTTRARREYEVDGRDYHFVS 85
           + +T  +           + E +GR YHF S
Sbjct: 403 IAHTPGNKWNV----KDYQLEYEGRLYHFGS 429


>d1q46a1 a.60.14.1 (A:89-175) Eukaryotic initiation factor 2alpha,
           eIF2alpha, domain 2 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 87

 Score = 24.3 bits (53), Expect = 4.9
 Identities = 10/63 (15%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 150 FIKPKSVESIMEMNKRMTEEQAKKMYDRSM-KMEQEFGEFFTAVVQGDMPEDIYQKVKEV 208
           + K K+V SI+       +   +++Y      + ++FG  + A     + E +++ ++  
Sbjct: 13  YQKSKTVHSILRYCAEKFQIPLEELYKTIAWPLSRKFGHAYEAFKLSIIDETVWEGIEPP 72

Query: 209 IQE 211
            ++
Sbjct: 73  SKD 75


>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal
           domain {Pseudomonas nautica [TaxId: 2743]}
          Length = 131

 Score = 25.1 bits (54), Expect = 5.8
 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 57  YTQDDPTTEDTTRARREYEVDGRDYHFVSSREQMEKDIQNHLFIEAGQYNDN 108
           Y ++DP        R + E DG      +   +    ++ ++   A QY   
Sbjct: 3   YERNDPYFAS---CRAQAEKDGVTLESDNKVIRDGNKVRVYMTSVAPQYGMT 51


>d1vmga_ a.204.1.2 (A:) Hypothetical protein SSo12199 (SSo3215)
           {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 83

 Score = 24.0 bits (52), Expect = 7.0
 Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 10/50 (20%)

Query: 160 MEMNKRMTEEQAKKMY----------DRSMKMEQEFGEFFTAVVQGDMPE 199
           M++  +  + + K+MY               + +E GE   A++  ++  
Sbjct: 1   MDLELKELQSKMKEMYFEKDSQRGIYATFTWLVEEVGELAEALLSNNLDS 50


>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain
           {Sulfur-oxidizing endosymbiont of Riftia pachyptila
           [TaxId: 35843]}
          Length = 223

 Score = 24.8 bits (53), Expect = 8.1
 Identities = 10/48 (20%), Positives = 24/48 (50%)

Query: 114 VASVRDVAEKGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIME 161
           +  +RDV +  K   + +SG  ++ +    + P   F +P+  + +M+
Sbjct: 169 IVMMRDVPDHTKEDFVLLSGTKVREMLGQGIAPPPEFSRPEVAKILMD 216


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 794,221
Number of extensions: 35230
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 16
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.2 bits)