BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10229
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 100/152 (65%), Gaps = 25/152 (16%)
Query: 94 TEEGVLSYEPVTQMQIDYARPVIILGPLKDRINDDLISEFPEQFGSCVPPL--------- 144
+EE VLSYE V ++ I+Y RPVIILGPLKDRINDDLISE+P++FGSCVP
Sbjct: 82 SEENVLSYEAVQRLSINYTRPVIILGPLKDRINDDLISEYPDKFGSCVPHTTRPKREYEV 141
Query: 145 -GKMY---DRSMKMEQEFGEFFTAVVQGDMPEDIY----QKVKEVIQEQSGPSIWGKHCI 196
G+ Y +ME++ + G +++Y V+EV ++ GKHCI
Sbjct: 142 DGRDYHFVSSREQMERDIQNHL-FIEAGQYNDNLYGTSVASVREVAEK-------GKHCI 193
Query: 197 LDVSGNAIKRLQVASLYPVAIFIKPKSVESII 228
LDVSGNAIKRLQVA LYPVA+FIKPKSV+S++
Sbjct: 194 LDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVM 225
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 38/46 (82%)
Query: 146 KMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIW 191
K Y+R++KMEQEFGE+FT VVQGD E+IY KVK +I QSGP+IW
Sbjct: 238 KTYERAIKMEQEFGEYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIW 283
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 137 bits (344), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 96/141 (68%), Gaps = 11/141 (7%)
Query: 98 VLSYEPVTQMQIDYARPVIILGPLKDRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQE 157
VLSYEPV Q +++Y RPVIILGP+KDR+NDDLISEFP++FGSCVP + R +++
Sbjct: 92 VLSYEPVNQQEVNYTRPVIILGPMKDRVNDDLISEFPDKFGSCVPHTTRP-KRDYEVDGR 150
Query: 158 FGEFFTAVVQ--GDMPEDIYQKVKEVIQEQSGPSIW--------GKHCILDVSGNAIKRL 207
F T+ Q D+ E + + + G S+ GKHCILDVSGNAIKRL
Sbjct: 151 DYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGTSVQSVRAVAEKGKHCILDVSGNAIKRL 210
Query: 208 QVASLYPVAIFIKPKSVESII 228
Q+A LYP++IFIKPKS+E+I+
Sbjct: 211 QIAQLYPISIFIKPKSMENIM 231
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 146 KMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIW 191
K ++R++++EQEF E FTA+VQGD EDIY +VK++I+EQSGP IW
Sbjct: 244 KTFERAVRLEQEFTEHFTAIVQGDTLEDIYNQVKQIIEEQSGPYIW 289
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 136 bits (343), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 85/202 (42%), Positives = 116/202 (57%), Gaps = 28/202 (13%)
Query: 44 EWHGRKKKMSRNNTAKITFRGKCKTRFFDRKNSYLPMNPGLNSIFSFPPGTEEGVLSYEP 103
EW ++ S + T I F K R R+ S L +S S G E+ VLSYE
Sbjct: 46 EWWQARRVHSDSETDDIGF-IPSKRRVERREWSRLKAKDWGSS--SGSQGREDSVLSYET 102
Query: 104 VTQMQIDYARPVIILGPLKDRINDDLISEFPEQFGSCVPPL----------GKMY---DR 150
VTQM++ YARP+IILGP KDR NDDL+SEFP++FGSCVP G+ Y
Sbjct: 103 VTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSS 162
Query: 151 SMKMEQEFGEFFTAVVQGDMPEDIY----QKVKEVIQEQSGPSIWGKHCILDVSGNAIKR 206
KME++ + + G +Y Q V+EV ++ GKHCILDVS NA++R
Sbjct: 163 REKMEKDI-QAHKFIEAGQYNSHLYGTSVQSVREVAEQ-------GKHCILDVSANAVRR 214
Query: 207 LQVASLYPVAIFIKPKSVESII 228
LQ A L+P+AIFI+P+S+E+++
Sbjct: 215 LQAAHLHPIAIFIRPRSLENVL 236
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 36/46 (78%)
Query: 146 KMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIW 191
K +DR+ K+EQEF E F+A+V+GD E+IY KVK VI++ SGP IW
Sbjct: 249 KAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIW 294
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/202 (42%), Positives = 116/202 (57%), Gaps = 28/202 (13%)
Query: 44 EWHGRKKKMSRNNTAKITFRGKCKTRFFDRKNSYLPMNPGLNSIFSFPPGTEEGVLSYEP 103
EW ++ S + T I F K R R+ S L +S S G E+ VLSYE
Sbjct: 40 EWWQARRVHSDSETDDIGF-IPSKRRVERREWSRLKAKDWGSS--SGSQGREDSVLSYET 96
Query: 104 VTQMQIDYARPVIILGPLKDRINDDLISEFPEQFGSCVPPL----------GKMY---DR 150
VTQM++ YARP+IILGP KDR NDDL+SEFP++FGSCVP G+ Y
Sbjct: 97 VTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSS 156
Query: 151 SMKMEQEFGEFFTAVVQGDMPEDIY----QKVKEVIQEQSGPSIWGKHCILDVSGNAIKR 206
KME++ + + G +Y Q V+EV ++ GKHCILDVS NA++R
Sbjct: 157 REKMEKDI-QAHKFIEAGQYNSHLYGTSVQSVREVAEQ-------GKHCILDVSANAVRR 208
Query: 207 LQVASLYPVAIFIKPKSVESII 228
LQ A L+P+AIFI+P+S+E+++
Sbjct: 209 LQAAHLHPIAIFIRPRSLENVL 230
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 36/46 (78%)
Query: 146 KMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIW 191
K +DR+ K+EQEF E F+A+V+GD E+IY KVK VI++ SGP IW
Sbjct: 243 KAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIW 288
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 133 bits (334), Expect = 8e-32, Method: Composition-based stats.
Identities = 87/204 (42%), Positives = 117/204 (57%), Gaps = 32/204 (15%)
Query: 44 EWHGRKKKMSRNNTAKITFRGKCKTRFFDRKNSYLPMNPGLNSIFSFPPGTEEGVLSYEP 103
EW ++ S + T I F K R R+ S L +S S G E+ VLSYE
Sbjct: 466 EWWQARRVHSDSETDDIGFI-PSKRRVERREWSRLKAKDWGSS--SGSQGREDSVLSYET 522
Query: 104 VTQMQIDYARPVIILGPLKDRINDDLISEFPEQFGSCVPPL----------GKMY---DR 150
VTQM++ YARP+IILGP KDR NDDL+SEFP++FGSCVP G+ Y
Sbjct: 523 VTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSS 582
Query: 151 SMKMEQEF--GEFFTAVVQGDMPEDIY----QKVKEVIQEQSGPSIWGKHCILDVSGNAI 204
KME++ +F A G +Y Q V+EV ++ GKHCILDVS NA+
Sbjct: 583 REKMEKDIRAHKFIEA---GQYNSHLYGTSVQSVREVAEQ-------GKHCILDVSANAV 632
Query: 205 KRLQVASLYPVAIFIKPKSVESII 228
+RLQ A L+P+AIFI+P+S+E+++
Sbjct: 633 RRLQAAHLHPIAIFIRPRSLENVL 656
Score = 62.8 bits (151), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/46 (58%), Positives = 36/46 (78%)
Query: 146 KMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIW 191
K +DR+ K+EQEF E F+A+V+GD E+IY KVK VI++ SGP IW
Sbjct: 669 KAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIW 714
>pdb|3KFV|A Chain A, Crystal Structure Of The Sh3-Kinase Fragment Of Tight
Junction Protein 3 (Tjp3) In Apo-Form
Length = 308
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 29/124 (23%)
Query: 101 YEPVTQMQIDYARPVIILGPLKDRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQEFGE 160
YE V + + RPV+ILGP+ D L +E P+QF E
Sbjct: 134 YERVVLREASFKRPVVILGPVADIAXQKLTAEXPDQF----------------------E 171
Query: 161 FFTAVVQGDMPEDIYQ-KVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFI 219
V + D P I + VI E+ KH +LDV+ +AI+RL YP+ +F
Sbjct: 172 IAETVSRTDSPSKIIKLDTVRVIAEKD------KHALLDVTPSAIERLNYVQYYPIVVFF 225
Query: 220 KPKS 223
P+S
Sbjct: 226 IPES 229
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 146 KMYDRSMKMEQEFGEFFTAVVQGDMPEDI-YQKVKEVIQEQSGPSIW 191
++Y ++ K+ + FTA + + D YQ++K +I+EQ IW
Sbjct: 250 RLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPIW 296
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 23/132 (17%)
Query: 100 SYEPVTQMQIDYARPVIILGPLKDRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQEFG 159
+YE V + + RPV I GP+ D + L E P+ + + K R +Q
Sbjct: 212 AYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIY-----QIAKSEPRDAGTDQRS- 265
Query: 160 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFI 219
+ +++ +K++I + KH +LDV+ NA+ RL A YP+ +F+
Sbjct: 266 ---SGIIR-------LHTIKQIIDQD-------KHALLDVTPNAVDRLNYAQWYPIVVFL 308
Query: 220 KPKSVESIICRR 231
P S + + R
Sbjct: 309 NPDSKQGVKTMR 320
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 146 KMYDRSMKMEQEFGEFFTAVVQ-GDMPEDIYQKVKEVIQEQSGPSIW 191
K+Y+RS K+ + FT + M + Y +KE IQ+Q +W
Sbjct: 333 KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVW 379
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 23/132 (17%)
Query: 100 SYEPVTQMQIDYARPVIILGPLKDRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQEFG 159
+YE V + + RPV I GP+ D + L E P+ + + K R +Q
Sbjct: 220 AYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIY-----QIAKSEPRDAGTDQRS- 273
Query: 160 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFI 219
+ +++ +K++I + KH +LDV+ NA+ RL A YP+ +F+
Sbjct: 274 ---SGIIR-------LHTIKQIIDQD-------KHALLDVTPNAVDRLNYAQWYPIVVFL 316
Query: 220 KPKSVESIICRR 231
P S + + R
Sbjct: 317 NPDSKQGVKTMR 328
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 146 KMYDRSMKMEQEFGEFFTAVVQ-GDMPEDIYQKVKEVIQEQSGPSIW 191
K+Y+RS K+ + FT + M + Y +KE IQ+Q +W
Sbjct: 341 KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVW 387
>pdb|3LH5|A Chain A, Crystal Structure Of The Sh3-Guanylate Kinase Core Domain
Of Zo-1
Length = 251
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 23/132 (17%)
Query: 100 SYEPVTQMQIDYARPVIILGPLKDRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQEFG 159
+YE V + + RPV I GP+ D + L E P+ + + K R +Q
Sbjct: 80 AYERVVLREAGFLRPVTIFGPIADVAREKLAREEPD-----IYQIAKSEPRDAGTDQRS- 133
Query: 160 EFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFI 219
+ +++ +K++I + KH +LDV+ NA+ RL A YP+ +F+
Sbjct: 134 ---SGIIR-------LHTIKQIIDQD-------KHALLDVTPNAVDRLNYAQWYPIVVFL 176
Query: 220 KPKSVESIICRR 231
P S + + R
Sbjct: 177 NPDSKQGVKTMR 188
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 146 KMYDRSMKMEQEFGEFFTAVVQ-GDMPEDIYQKVKEVIQEQSGPSIW 191
K+Y+RS K+ + FT + M + Y +KE IQ+Q +W
Sbjct: 201 KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVW 247
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 65/152 (42%), Gaps = 33/152 (21%)
Query: 103 PVTQ---MQIDYARPVIILGPL---KDRINDDLISEFPEQFGSCVPPL----------GK 146
P T+ Q +RP++I GP K + L +E+P+ FG VP GK
Sbjct: 5 PTTENLYFQGSMSRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAGEVNGK 64
Query: 147 MYD-------RSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWGKHCILDV 199
Y+ +SM EF E+ A G+ VK+V S GK CILD+
Sbjct: 65 DYNFVSVDEFKSMIKNNEFIEW--AQFSGNYYGSTVASVKQV-------SKSGKTCILDI 115
Query: 200 SGNAIKRLQ-VASLYPVAIFIKPKSVESIICR 230
+K ++ + L +FI P SVE + R
Sbjct: 116 DMQGVKSVKAIPELNARFLFIAPPSVEDLKKR 147
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 30/140 (21%)
Query: 112 ARPVIILGPL---KDRINDDLISEFPEQFGSCVPPL----------GKMYD-------RS 151
+RP++I GP K + L +E+P+ FG V GK Y+ +S
Sbjct: 2 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKS 61
Query: 152 MKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQ-VA 210
M EF E+ A G+ VK+V S GK CILD+ +K ++ +
Sbjct: 62 MIKNNEFIEW--AQFSGNYYGSTVASVKQV-------SKSGKTCILDIDMQGVKSVKAIP 112
Query: 211 SLYPVAIFIKPKSVESIICR 230
L +FI P SVE + R
Sbjct: 113 ELNARFLFIAPPSVEDLKKR 132
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 30/140 (21%)
Query: 112 ARPVIILGPL---KDRINDDLISEFPEQFGSCVPPL----------GKMYD-------RS 151
+RP++I GP K + L +E+P+ FG V GK Y+ +S
Sbjct: 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKS 60
Query: 152 MKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQ-VA 210
M EF E+ A G+ VK+V S GK CILD+ +K ++ +
Sbjct: 61 MIKNNEFIEW--AQFSGNYYGSTVASVKQV-------SKSGKTCILDIDMQGVKSVKAIP 111
Query: 211 SLYPVAIFIKPKSVESIICR 230
L +FI P SVE + R
Sbjct: 112 ELNARFLFIAPPSVEDLKKR 131
>pdb|3PLT|A Chain A, Crystal Structure Of Lsp1 From Saccharomyces Cerevisiae
pdb|3PLT|B Chain B, Crystal Structure Of Lsp1 From Saccharomyces Cerevisiae
pdb|3PLT|C Chain C, Crystal Structure Of Lsp1 From Saccharomyces Cerevisiae
Length = 234
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 73 RKNSYLPMNPGLNSIFSFPPGTEEGVL-SYEPVTQMQIDYARPVIILGPLKDRINDDLIS 131
RKN+ P L S TE+GVL + E V + + A+ + + G NDD +S
Sbjct: 10 RKNAAGNFGPELARKLSQLVKTEKGVLRAMEVVASERREAAKQLSLWGA----DNDDDVS 65
Query: 132 EFPEQFGSCVPPLGKMYDR 150
+ ++ G + LG++ D+
Sbjct: 66 DVTDKLGVLIYELGELQDQ 84
>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of
Human Cask
Length = 180
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 19/127 (14%)
Query: 113 RPVIILGPL---KDRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQEFGEFFTAVVQGD 169
+ +++LG + I + LI++ P++F +P R K ++E G+ + V
Sbjct: 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTT----RPPKKDEENGKNYYFVSHDQ 61
Query: 170 MPEDI-------YQKVKEVIQEQSGPSIWGKH-----CILDVSGNAIKRLQVASLYPVAI 217
M +DI Y ++ + +I H ILDV A+K L+ A P +
Sbjct: 62 MMQDISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVV 121
Query: 218 FIKPKSV 224
FI ++
Sbjct: 122 FIAAPTI 128
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 23/135 (17%)
Query: 113 RPVIILGPL---KDRINDDLISEFPEQFGSCVPPL----------GKMY----DRSMKME 155
RPV++ GP K + L E FG V GK Y M+ +
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 64
Query: 156 QEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPV 215
G+F + + ++Y KE ++ + C+LDV ++ ++ L P+
Sbjct: 65 IAAGDF---IEHAEFSGNLYGTSKEAVR---AVQAMNRICVLDVDLQGVRSIKKTDLCPI 118
Query: 216 AIFIKPKSVESIICR 230
IF++P S++ + R
Sbjct: 119 YIFVQPPSLDVLEQR 133
>pdb|2BMO|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase
pdb|2BMQ|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With Nitrobenzene
pdb|2BMR|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With 3-Nitrotoluene
Length = 447
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 164 AVVQGDMPEDIYQKVKEVIQEQSGPS 189
A V+ DMPED+ ++V + +Q GP+
Sbjct: 328 AFVEKDMPEDLKRRVADAVQRSIGPA 353
>pdb|2HMJ|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase
Phe-352-Val Mutant.
pdb|2HML|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Phenanthrene.
pdb|2HMN|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Anthracene
Length = 449
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 164 AVVQGDMPEDIYQKVKEVIQEQSGPS 189
A+V+ DMPED+ +++ + +Q GP+
Sbjct: 330 AIVEKDMPEDLKRRLADSVQRTVGPA 355
>pdb|1NDO|A Chain A, Napthalene 1,2-Dioxygenase
pdb|1NDO|C Chain C, Napthalene 1,2-Dioxygenase
pdb|1NDO|E Chain E, Napthalene 1,2-Dioxygenase
pdb|1EG9|A Chain A, Naphthalene 1,2-Dioxygenase With Indole Bound In The
Active Site.
pdb|1O7M|A Chain A, Naphthalene 1,2-Dioxygenase, Binary Complex With Dioxygen
pdb|1O7N|A Chain A, Naphthalene 1,2-dioxygenase, Ternary Complex With Dioxygen
And Indole
pdb|1O7P|A Chain A, Naphthalene 1,2-Dioxygenase, Product Complex
pdb|1O7W|A Chain A, Naphthalene 1,2-Dioxygenase, Fully Reduced Form
pdb|1O7G|A Chain A, Naphthalene 1,2-Dioxygenase With Naphthalene Bound In The
Active Site.
pdb|1O7H|A Chain A, Naphthalene 1,2-Dioxygenase With Oxidized Rieske Iron
Sulphur Center Site.
pdb|1UUV|A Chain A, Naphthalene 1,2-Dioxygenase With Nitric Oxide And Indole
Bound In The Active Site.
pdb|1UUW|A Chain A, Naphthalene 1,2-dioxygenase With Nitric Oxide Bound In The
Active Site.
pdb|2HMK|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Phenanthrene
pdb|2HMM|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Anthracene
pdb|2HMO|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
3- Nitrotoluene
Length = 449
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 164 AVVQGDMPEDIYQKVKEVIQEQSGPS 189
A+V+ DMPED+ +++ + +Q GP+
Sbjct: 330 AIVEKDMPEDLKRRLADSVQRTFGPA 355
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 30/131 (22%)
Query: 112 ARPVIIL----GPLKDRINDDLISEFPEQFGSCVPPL----------GKMYDRSMKME-- 155
R ++L G + I + L+S+ PE+F VP GK Y E
Sbjct: 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMT 77
Query: 156 -----QEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVA 210
EF EF QG+M ++ V ++ ++ K ILD+ +K ++ A
Sbjct: 78 RNISANEFLEF--GSYQGNMFGTKFETVHQIHKQ-------NKIAILDIEPQTLKIVRTA 128
Query: 211 SLYPVAIFIKP 221
L P +FI P
Sbjct: 129 ELSPFIVFIAP 139
>pdb|2J28|C Chain C, Model Of E. Coli Srp Bound To 70s Rncs
Length = 267
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 14 KCKTRFFDRKNSYLPMNPGLNSIFSFPPILEWHGRKKKMSRNNTAKITFR 63
KCK R++ +NP L+ F P+LE + K RNN +IT R
Sbjct: 2 KCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKN--SKSGGRNNNGRITTR 49
>pdb|3E1B|N Chain N, Structure Of The 50s Subunit Of E. Coli Ribosome In
Pre-Accommodation State
pdb|3E1D|N Chain N, Structure Of The 50s Subunit Of E. Coli Ribosome In
Post-Accommodation State
Length = 270
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 14 KCKTRFFDRKNSYLPMNPGLNSIFSFPPILEWHGRKKKMSRNNTAKITFR 63
KCK R++ +NP L+ F P+LE + K RNN +IT R
Sbjct: 5 KCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKN--SKSGGRNNNGRITTR 52
>pdb|2AW4|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File
Contains The 50s Subunit Of One 70s Ribosome. The
Entire Crystal Structure Contains Two 70s Ribosomes And
Is Described In Remark 400.
pdb|2AWB|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File
Contains The 50s Subunit Of The Second 70s Ribosome.
The Entire Crystal Structure Contains Two 70s Ribosomes
And Is Described In Remark 400.
pdb|1VS6|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described
In Remark 400.
pdb|1VS8|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described
In Remark 400.
pdb|2VHM|C Chain C, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 1 Of 4)
pdb|2VHN|C Chain C, Structure Of Pdf Binding Helix In Complex With The
Ribosome. (Part 2 Of 4)
pdb|3DF2|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This
File Contains The 50s Subunit Of The First 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|3DF4|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This
File Contains The 50s Subunit Of The Second 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|3BBX|C Chain C, The Hsp15 Protein Fitted Into The Low Resolution Cryo-Em
Map 50s.Nc-Trna.Hsp15 Complex
pdb|3I1N|C Chain C, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1P|C Chain C, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1R|C Chain C, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1T|C Chain C, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I20|C Chain C, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I22|C Chain C, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3KCR|6 Chain 6, Ribosome-Secy Complex. This Entry 3kcr Contains 50s
Ribosomal Subnit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 3kc4
pdb|1VT2|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3ORB|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 50s Subunit Of The
First 70s Ribosome Bound To Cem-101.
pdb|3IZT|D Chain D, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A
Near-Cognate Codon.
pdb|3IZU|D Chain D, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A Cognate
Codon
pdb|3SGF|C Chain C, Crystal Structure Of Release Factor Rf3 Trapped In The
Gtp State On A Rotated Conformation Of The Ribosome
pdb|3UOS|C Chain C, Crystal Structure Of Release Factor Rf3 Trapped In The
Gtp State On A Rotated Conformation Of The Ribosome
(Without Viomycin)
pdb|4GAR|C Chain C, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
pdb|4GAU|C Chain C, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
Length = 273
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 14 KCKTRFFDRKNSYLPMNPGLNSIFSFPPILEWHGRKKKMSRNNTAKITFR 63
KCK R++ +NP L+ F P+LE + K RNN +IT R
Sbjct: 5 KCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKN--SKSGGRNNNGRITTR 52
>pdb|3FIK|C Chain C, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 50s Subunit.
pdb|2WWQ|C Chain C, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 50s, The P-Site
Trna And The Tnac Leader Peptide (Part 2 Of 2).
pdb|3OFQ|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OFR|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 50s Subunit Of The
First 70s Ribosome With Erthromycin Bound.
pdb|3OFC|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 50s Subunit Of
The First 70s Ribosome With Chloramphenicol Bound.
pdb|3OFD|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 50s Subunit Of
The Second 70s Ribosome.
pdb|3OFZ|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 50s Subunit Of The
First 70s Ribosome Bound To Clindamycin.
pdb|3OG0|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OAS|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 50s Subunit Of
The Second 70s Ribosome.
pdb|3OAT|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 50s Subunit Of
The First 70s Ribosome With Telithromycin Bound.
pdb|3R8S|C Chain C, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|3R8T|C Chain C, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|3J19|C Chain C, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And
Mld-Loading (50s Subunit)
Length = 271
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 14 KCKTRFFDRKNSYLPMNPGLNSIFSFPPILEWHGRKKKMSRNNTAKITFR 63
KCK R++ +NP L+ F P+LE + K RNN +IT R
Sbjct: 4 KCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKN--SKSGGRNNNGRITTR 51
>pdb|1P85|A Chain A, Real Space Refined Coordinates Of The 50s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp
State Of E. Coli 70s Ribosome
pdb|1P86|A Chain A, Real Space Refined Coordinates Of The 50s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The
Initiation-Like State Of E. Coli 70s Ribosome
pdb|2I2T|C Chain C, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described
In Remark 400.
pdb|2I2V|C Chain C, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described
In Remark 400.
pdb|2QOV|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 50s Subunit Of The First 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QOX|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 50s Subunit Of The Second 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QOZ|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 50s Subunit Of The
First 70s Ribosome, With Neomycin Bound. The Entire
Crystal Structure Contains Two 70s Ribosomes.
pdb|2QP1|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Neomycin Bound. The Entire
Crystal Structure Contains Two 70s Ribosomes.
pdb|2QAM|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 50s Subunit Of The First 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QAO|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 50s Subunit Of The Second 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBA|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 50s Subunit Of The First 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBC|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 50s Subunit Of The Second 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBE|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
First 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described
In Remark 400.
pdb|2QBG|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described
In Remark 400.
pdb|2QBI|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The First 70s Ribosome, With Gentamicin
And Rrf Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QBK|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The Second 70s Ribosome, With Gentamicin
And Rrf Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2Z4L|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The First 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2Z4N|C Chain C, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The Second 70s Ribosome, With
Paromomycin And Rrf Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2RDO|C Chain C, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
pdb|3J01|6 Chain 6, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|3J0T|D Chain D, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0W|D Chain D, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0Y|D Chain D, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J11|D Chain D, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 3 Of The Six
Classes)
pdb|3J12|D Chain D, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J14|D Chain D, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 6 Of The Six
Classes)
Length = 272
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 14 KCKTRFFDRKNSYLPMNPGLNSIFSFPPILEWHGRKKKMSRNNTAKITFR 63
KCK R++ +NP L+ F P+LE + K RNN +IT R
Sbjct: 4 KCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKN--SKSGGRNNNGRITTR 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,060,835
Number of Sequences: 62578
Number of extensions: 292104
Number of successful extensions: 716
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 33
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)