Query psy10229
Match_columns 231
No_of_seqs 244 out of 1254
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 21:11:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0609|consensus 100.0 2.2E-51 4.8E-56 391.2 11.5 207 11-231 215-470 (542)
2 KOG0708|consensus 100.0 7.8E-35 1.7E-39 268.6 11.0 190 31-231 84-300 (359)
3 PF00625 Guanylate_kin: Guanyl 100.0 4.6E-28 9.9E-33 203.1 11.5 111 111-230 1-131 (183)
4 smart00072 GuKc Guanylate kina 99.9 8.3E-26 1.8E-30 190.1 12.6 110 112-230 2-131 (184)
5 COG0194 Gmk Guanylate kinase [ 99.9 6.1E-26 1.3E-30 194.3 11.6 109 111-230 3-131 (191)
6 PRK14737 gmk guanylate kinase; 99.9 3.7E-25 8E-30 188.3 12.6 110 111-230 3-133 (186)
7 PLN02772 guanylate kinase 99.9 1.2E-24 2.6E-29 204.4 13.0 120 101-229 120-263 (398)
8 KOG0707|consensus 99.8 2.2E-21 4.9E-26 170.5 6.7 114 107-229 32-165 (231)
9 PRK14738 gmk guanylate kinase; 99.8 1.9E-19 4.1E-24 154.7 12.6 111 109-229 10-140 (206)
10 cd00071 GMPK Guanosine monopho 99.8 1.5E-18 3.3E-23 140.6 11.0 101 114-223 1-121 (137)
11 TIGR03263 guanyl_kin guanylate 99.6 1.3E-14 2.9E-19 119.9 12.0 107 113-229 2-128 (180)
12 KOG3580|consensus 99.6 6.6E-16 1.4E-20 150.3 4.6 109 95-231 614-726 (1027)
13 PRK00300 gmk guanylate kinase; 99.6 5E-14 1.1E-18 119.0 12.6 109 111-229 4-132 (205)
14 TIGR02322 phosphon_PhnN phosph 98.9 1.7E-08 3.8E-13 83.6 11.4 106 113-228 2-125 (179)
15 PRK10078 ribose 1,5-bisphospho 98.9 9.1E-09 2E-13 86.5 8.7 108 113-229 3-126 (186)
16 PRK08356 hypothetical protein; 98.2 9.8E-07 2.1E-11 74.9 2.6 99 113-225 6-127 (195)
17 KOG3812|consensus 97.9 4.1E-05 8.8E-10 71.7 8.3 207 6-230 54-301 (475)
18 cd00227 CPT Chloramphenicol (C 97.3 0.00039 8.4E-09 57.8 5.0 106 112-229 2-126 (175)
19 PRK00091 miaA tRNA delta(2)-is 97.2 0.00039 8.5E-09 64.0 4.4 98 112-229 4-125 (307)
20 COG3709 Uncharacterized compon 96.4 0.033 7.2E-07 48.0 9.9 101 111-220 4-122 (192)
21 COG3172 NadR Predicted ATPase/ 91.6 0.11 2.4E-06 44.8 1.9 79 109-203 5-90 (187)
22 PF07931 CPT: Chloramphenicol 91.5 1.1 2.5E-05 38.1 8.0 99 113-229 2-125 (174)
23 PF14604 SH3_9: Variant SH3 do 90.7 0.11 2.4E-06 35.0 0.9 26 24-50 3-36 (49)
24 PHA02530 pseT polynucleotide k 90.3 1.2 2.7E-05 39.5 7.6 22 113-134 3-27 (300)
25 PRK06762 hypothetical protein; 90.2 2.5 5.3E-05 34.2 8.6 98 112-227 2-110 (166)
26 PRK00698 tmk thymidylate kinas 90.0 1.3 2.8E-05 36.7 7.0 22 112-133 3-27 (205)
27 TIGR00174 miaA tRNA isopenteny 89.8 0.28 6.1E-06 45.0 3.0 71 114-198 1-94 (287)
28 PF00018 SH3_1: SH3 domain; I 89.3 0.16 3.5E-06 33.7 0.8 28 24-52 4-39 (48)
29 PRK00098 GTPase RsgA; Reviewed 88.2 0.79 1.7E-05 41.7 4.8 71 111-184 163-274 (298)
30 cd00174 SH3 Src homology 3 dom 82.4 0.93 2E-05 29.1 1.8 19 33-51 14-40 (54)
31 COG0563 Adk Adenylate kinase a 82.3 4.4 9.5E-05 34.4 6.3 95 115-223 3-117 (178)
32 PF13671 AAA_33: AAA domain; P 81.7 5.2 0.00011 31.0 6.1 91 115-223 2-108 (143)
33 TIGR01313 therm_gnt_kin carboh 81.6 5.3 0.00011 32.2 6.3 20 115-134 1-23 (163)
34 KOG4792|consensus 81.4 0.66 1.4E-05 41.9 1.0 20 32-51 138-165 (293)
35 PLN02840 tRNA dimethylallyltra 80.9 1.4 3E-05 42.7 3.0 24 112-135 21-47 (421)
36 PF06414 Zeta_toxin: Zeta toxi 79.0 3.9 8.5E-05 34.5 4.9 105 110-223 13-131 (199)
37 KOG1118|consensus 77.8 1.4 3.1E-05 41.3 2.0 31 22-53 311-349 (366)
38 PRK09087 hypothetical protein; 76.8 14 0.00029 32.4 7.8 116 100-229 32-160 (226)
39 PRK08099 bifunctional DNA-bind 76.1 4.3 9.4E-05 38.8 4.8 39 109-150 216-257 (399)
40 smart00326 SH3 Src homology 3 75.6 1.6 3.5E-05 28.2 1.3 19 33-51 17-43 (58)
41 PRK05057 aroK shikimate kinase 75.2 27 0.00059 28.9 8.9 22 112-133 4-28 (172)
42 PRK13946 shikimate kinase; Pro 75.1 9.9 0.00021 31.7 6.2 23 111-133 9-34 (184)
43 TIGR01526 nadR_NMN_Atrans nico 74.0 7 0.00015 36.1 5.5 36 109-147 159-197 (325)
44 PRK08233 hypothetical protein; 73.7 19 0.00042 29.0 7.5 23 113-135 4-29 (182)
45 PRK14530 adenylate kinase; Pro 73.6 17 0.00037 30.9 7.5 21 114-134 5-28 (215)
46 PRK12339 2-phosphoglycerate ki 72.9 31 0.00066 29.7 8.9 22 112-133 3-27 (197)
47 PRK13949 shikimate kinase; Pro 72.7 11 0.00024 31.3 5.9 21 113-133 2-25 (169)
48 PF07653 SH3_2: Variant SH3 do 71.9 1.3 2.9E-05 30.0 0.2 17 34-50 15-40 (55)
49 TIGR03574 selen_PSTK L-seryl-t 71.3 17 0.00037 31.6 7.1 21 114-134 1-24 (249)
50 PRK14532 adenylate kinase; Pro 70.8 16 0.00036 30.0 6.6 20 115-134 3-25 (188)
51 TIGR01360 aden_kin_iso1 adenyl 70.7 8.1 0.00018 31.4 4.6 21 113-133 4-27 (188)
52 KOG2199|consensus 68.8 1.8 4E-05 41.8 0.4 17 34-50 231-255 (462)
53 PRK04040 adenylate kinase; Pro 67.5 14 0.00029 31.4 5.5 22 113-134 3-27 (188)
54 PRK05541 adenylylsulfate kinas 66.3 19 0.00041 29.4 5.9 24 111-134 6-32 (176)
55 PRK08118 topology modulation p 65.1 27 0.00059 28.9 6.7 19 115-133 4-25 (167)
56 PLN02165 adenylate isopentenyl 64.0 17 0.00036 34.4 5.7 26 109-134 40-68 (334)
57 PRK13948 shikimate kinase; Pro 63.4 48 0.001 28.1 8.1 23 111-133 9-34 (182)
58 PRK13947 shikimate kinase; Pro 63.3 77 0.0017 25.4 9.4 21 114-134 3-26 (171)
59 COG1105 FruK Fructose-1-phosph 62.6 27 0.00059 32.6 6.8 50 170-230 143-192 (310)
60 PRK07261 topology modulation p 61.7 34 0.00073 28.3 6.7 18 115-132 3-23 (171)
61 COG0703 AroK Shikimate kinase 60.3 57 0.0012 28.0 7.9 22 112-133 2-26 (172)
62 PRK13975 thymidylate kinase; P 58.9 88 0.0019 25.6 8.8 23 113-135 3-28 (196)
63 PRK14088 dnaA chromosomal repl 57.6 89 0.0019 30.2 9.6 49 174-229 216-270 (440)
64 cd02027 APSK Adenosine 5'-phos 57.4 66 0.0014 25.9 7.6 19 115-133 2-23 (149)
65 TIGR01359 UMP_CMP_kin_fam UMP- 57.2 66 0.0014 26.1 7.7 20 115-134 2-24 (183)
66 PRK12288 GTPase RsgA; Reviewed 56.8 16 0.00035 34.3 4.4 21 112-132 205-228 (347)
67 COG1618 Predicted nucleotide k 55.8 96 0.0021 26.9 8.5 43 176-227 121-167 (179)
68 PF03193 DUF258: Protein of un 55.7 13 0.00028 31.4 3.2 21 112-132 35-58 (161)
69 PRK00149 dnaA chromosomal repl 55.7 54 0.0012 31.4 7.8 48 175-229 234-287 (450)
70 cd01672 TMPK Thymidine monopho 55.4 23 0.00049 28.7 4.6 21 114-134 2-25 (200)
71 PLN02748 tRNA dimethylallyltra 54.2 38 0.00082 33.4 6.6 25 110-134 20-47 (468)
72 KOG0162|consensus 53.3 7.9 0.00017 40.4 1.8 17 34-50 1067-1091(1106)
73 KOG1663|consensus 52.9 81 0.0018 28.5 7.9 75 148-230 62-141 (237)
74 PF13207 AAA_17: AAA domain; P 52.5 14 0.0003 27.8 2.7 19 115-133 2-23 (121)
75 TIGR00362 DnaA chromosomal rep 50.9 1E+02 0.0022 28.9 8.7 48 175-229 222-275 (405)
76 COG1880 CdhB CO dehydrogenase/ 50.9 8 0.00017 33.1 1.2 60 102-162 26-100 (170)
77 cd01968 Nitrogenase_NifE_I Nit 50.1 1.6E+02 0.0035 27.8 10.0 114 117-230 67-203 (410)
78 KOG4226|consensus 49.3 6.5 0.00014 36.6 0.4 18 34-51 207-234 (379)
79 PRK06217 hypothetical protein; 48.9 1.5E+02 0.0033 24.4 8.9 19 115-133 4-25 (183)
80 TIGR00041 DTMP_kinase thymidyl 47.9 95 0.0021 25.4 7.2 23 112-134 3-28 (195)
81 TIGR01862 N2-ase-Ialpha nitrog 47.8 1.5E+02 0.0033 28.5 9.6 113 116-230 97-236 (443)
82 PRK14729 miaA tRNA delta(2)-is 47.3 48 0.001 30.7 5.8 20 113-132 5-27 (300)
83 cd02021 GntK Gluconate kinase 47.1 1.2E+02 0.0025 23.8 7.4 18 115-132 2-22 (150)
84 KOG1029|consensus 47.0 11 0.00024 39.5 1.7 19 33-51 1068-1094(1118)
85 PRK00889 adenylylsulfate kinas 47.0 1.2E+02 0.0026 24.5 7.7 22 112-133 4-28 (175)
86 TIGR01351 adk adenylate kinase 46.4 26 0.00056 29.7 3.7 19 115-133 2-23 (210)
87 PF13469 Sulfotransfer_3: Sulf 45.3 17 0.00036 28.8 2.2 28 113-140 1-31 (215)
88 PF08477 Miro: Miro-like prote 44.9 23 0.00051 26.3 2.9 20 115-134 2-24 (119)
89 cd01965 Nitrogenase_MoFe_beta_ 44.6 2E+02 0.0043 27.4 9.7 103 117-219 62-190 (428)
90 PF12775 AAA_7: P-loop contain 44.1 25 0.00055 31.7 3.4 26 109-134 30-58 (272)
91 KOG3875|consensus 43.7 6.8 0.00015 36.9 -0.3 39 22-65 273-324 (362)
92 PF02254 TrkA_N: TrkA-N domain 43.1 77 0.0017 23.7 5.5 46 176-230 12-58 (116)
93 PF13401 AAA_22: AAA domain; P 43.1 25 0.00054 26.6 2.8 106 111-226 3-129 (131)
94 COG4639 Predicted kinase [Gene 42.8 1.2E+02 0.0026 26.0 7.1 94 112-225 2-109 (168)
95 KOG2070|consensus 41.0 13 0.00029 37.1 1.2 19 34-52 33-59 (661)
96 PRK14478 nitrogenase molybdenu 40.8 1.6E+02 0.0034 28.7 8.6 115 116-230 99-236 (475)
97 cd01977 Nitrogenase_VFe_alpha 40.6 3.3E+02 0.007 25.8 10.7 114 116-230 67-207 (415)
98 PRK05537 bifunctional sulfate 40.4 73 0.0016 32.0 6.3 21 113-133 393-416 (568)
99 KOG4348|consensus 40.4 11 0.00025 37.1 0.6 27 24-51 107-141 (627)
100 cd04161 Arl2l1_Arl13_like Arl2 40.2 30 0.00065 27.8 3.0 23 114-136 1-26 (167)
101 TIGR00235 udk uridine kinase. 40.0 33 0.00072 28.9 3.4 26 109-134 3-31 (207)
102 KOG1843|consensus 39.5 12 0.00026 36.4 0.6 19 34-52 432-460 (473)
103 cd04122 Rab14 Rab14 subfamily. 39.3 37 0.00079 26.9 3.3 18 115-132 5-25 (166)
104 PF07728 AAA_5: AAA domain (dy 39.2 29 0.00063 26.9 2.7 23 114-136 1-26 (139)
105 PRK14086 dnaA chromosomal repl 39.1 1.3E+02 0.0028 30.8 7.8 49 174-229 399-453 (617)
106 PF13578 Methyltransf_24: Meth 38.4 25 0.00054 26.2 2.1 61 165-229 1-64 (106)
107 cd01861 Rab6 Rab6 subfamily. 37.5 40 0.00086 26.2 3.2 19 115-133 3-24 (161)
108 PF01926 MMR_HSR1: 50S ribosom 37.2 41 0.00089 25.2 3.2 18 115-132 2-22 (116)
109 COG0593 DnaA ATPase involved i 36.8 1.4E+02 0.003 29.0 7.3 121 98-228 96-250 (408)
110 cd04119 RJL RJL (RabJ-Like) su 36.7 46 0.001 25.7 3.5 18 115-132 3-23 (168)
111 PF13173 AAA_14: AAA domain 36.3 42 0.00092 26.0 3.2 23 112-134 2-27 (128)
112 KOG0086|consensus 35.8 34 0.00075 29.6 2.7 32 113-147 10-45 (214)
113 PF13238 AAA_18: AAA domain; P 35.3 38 0.00082 25.2 2.7 19 115-133 1-22 (129)
114 COG0324 MiaA tRNA delta(2)-iso 35.2 79 0.0017 29.5 5.2 24 112-135 3-29 (308)
115 PRK00279 adk adenylate kinase; 35.0 1.4E+02 0.0031 25.2 6.5 20 115-134 3-25 (215)
116 TIGR02931 anfK_nitrog Fe-only 34.6 3E+02 0.0065 26.8 9.3 102 116-218 72-202 (461)
117 cd02023 UMPK Uridine monophosp 34.4 97 0.0021 25.7 5.3 19 115-133 2-23 (198)
118 PRK14476 nitrogenase molybdenu 34.3 2.7E+02 0.006 27.0 9.0 101 117-217 73-201 (455)
119 PF05729 NACHT: NACHT domain 33.8 45 0.00098 25.9 3.0 20 113-132 1-23 (166)
120 cd03273 ABC_SMC2_euk Eukaryoti 33.6 52 0.0011 28.7 3.6 33 99-131 12-47 (251)
121 KOG3125|consensus 33.5 79 0.0017 28.3 4.6 44 148-197 90-136 (234)
122 cd00009 AAA The AAA+ (ATPases 33.4 54 0.0012 24.1 3.3 23 111-133 18-43 (151)
123 cd04107 Rab32_Rab38 Rab38/Rab3 33.3 45 0.00097 27.7 3.0 18 115-132 3-23 (201)
124 cd01867 Rab8_Rab10_Rab13_like 32.9 57 0.0012 25.8 3.5 20 113-132 4-26 (167)
125 cd04138 H_N_K_Ras_like H-Ras/N 32.7 44 0.00095 25.6 2.8 18 115-132 4-24 (162)
126 cd01966 Nitrogenase_NifN_1 Nit 32.6 3.8E+02 0.0082 25.6 9.6 101 117-217 62-190 (417)
127 COG4161 ArtP ABC-type arginine 32.4 48 0.001 29.2 3.1 22 108-129 24-48 (242)
128 PRK05800 cobU adenosylcobinami 32.3 1.7E+02 0.0036 24.4 6.4 21 114-134 3-26 (170)
129 smart00382 AAA ATPases associa 31.4 66 0.0014 23.2 3.4 25 112-136 2-29 (148)
130 KOG0515|consensus 31.2 27 0.00058 35.4 1.5 21 32-52 697-728 (752)
131 PF13521 AAA_28: AAA domain; P 31.2 46 0.001 26.7 2.7 26 115-144 2-30 (163)
132 cd01967 Nitrogenase_MoFe_alpha 31.2 4.4E+02 0.0095 24.5 10.3 113 118-230 69-205 (406)
133 cd00879 Sar1 Sar1 subfamily. 31.2 54 0.0012 26.5 3.1 23 112-134 19-44 (190)
134 PRK06620 hypothetical protein; 30.7 2.1E+02 0.0045 24.7 6.9 99 113-229 45-154 (214)
135 TIGR01283 nifE nitrogenase mol 30.6 3.6E+02 0.0078 25.9 9.1 115 116-230 101-242 (456)
136 PLN02200 adenylate kinase fami 30.4 71 0.0015 28.1 3.9 38 96-133 26-67 (234)
137 PRK14527 adenylate kinase; Pro 30.3 67 0.0015 26.6 3.6 23 111-133 5-30 (191)
138 cd04158 ARD1 ARD1 subfamily. 30.3 58 0.0013 26.0 3.2 18 115-132 2-22 (169)
139 PRK06893 DNA replication initi 30.2 1.2E+02 0.0027 26.1 5.4 47 176-229 115-168 (229)
140 PLN02924 thymidylate kinase 30.1 3.7E+02 0.008 23.3 8.8 25 111-135 15-42 (220)
141 KOG3354|consensus 30.1 2.9E+02 0.0062 24.1 7.3 45 111-160 11-58 (191)
142 cd01897 NOG NOG1 is a nucleola 30.0 52 0.0011 25.8 2.8 22 113-134 1-25 (168)
143 KOG1158|consensus 30.0 2.2E+02 0.0048 29.4 7.8 57 106-162 485-555 (645)
144 TIGR02528 EutP ethanolamine ut 29.5 46 0.00099 25.5 2.3 19 114-132 2-23 (142)
145 PRK00131 aroK shikimate kinase 29.4 76 0.0016 25.1 3.7 23 112-134 4-29 (175)
146 cd04160 Arfrp1 Arfrp1 subfamil 29.2 55 0.0012 25.6 2.8 19 115-133 2-23 (167)
147 PHA02757 hypothetical protein; 29.2 37 0.0008 25.0 1.6 21 176-203 36-56 (75)
148 PF05621 TniB: Bacterial TniB 29.0 46 0.00099 31.1 2.6 23 115-137 64-89 (302)
149 cd00876 Ras Ras family. The R 29.0 54 0.0012 25.1 2.7 18 115-132 2-22 (160)
150 cd00464 SK Shikimate kinase (S 29.0 62 0.0013 25.2 3.0 21 114-134 1-24 (154)
151 TIGR01663 PNK-3'Pase polynucle 28.8 3E+02 0.0065 27.5 8.4 24 109-132 366-392 (526)
152 cd01129 PulE-GspE PulE/GspE Th 28.7 4.2E+02 0.0092 23.6 9.1 94 111-211 79-197 (264)
153 PRK14087 dnaA chromosomal repl 28.7 2.9E+02 0.0063 26.8 8.1 49 174-229 228-282 (450)
154 PRK14956 DNA polymerase III su 28.7 4.6E+02 0.01 26.1 9.6 100 114-220 42-156 (484)
155 PF11288 DUF3089: Protein of u 28.5 52 0.0011 29.0 2.7 35 99-133 75-116 (207)
156 PRK07994 DNA polymerase III su 28.4 3.7E+02 0.0081 27.7 9.2 19 114-132 40-61 (647)
157 PRK00454 engB GTP-binding prot 28.1 59 0.0013 26.3 2.9 29 104-132 16-47 (196)
158 smart00173 RAS Ras subfamily o 27.9 59 0.0013 25.4 2.7 18 115-132 3-23 (164)
159 PRK14021 bifunctional shikimat 27.8 1.4E+02 0.0029 29.8 5.8 25 109-133 3-30 (542)
160 COG0369 CysJ Sulfite reductase 27.8 3.7E+02 0.008 27.4 8.9 76 108-184 436-533 (587)
161 cd04110 Rab35 Rab35 subfamily. 27.6 73 0.0016 26.5 3.4 20 113-132 7-29 (199)
162 COG1428 Deoxynucleoside kinase 27.4 37 0.0008 30.3 1.6 22 113-134 5-29 (216)
163 PF08433 KTI12: Chromatin asso 27.2 39 0.00085 30.6 1.8 22 114-135 3-27 (270)
164 COG0572 Udk Uridine kinase [Nu 27.1 72 0.0016 28.4 3.4 30 113-142 9-41 (218)
165 cd04113 Rab4 Rab4 subfamily. 26.9 61 0.0013 25.2 2.7 18 115-132 3-23 (161)
166 PRK13808 adenylate kinase; Pro 26.9 4E+02 0.0086 25.1 8.4 19 115-133 3-24 (333)
167 PRK10751 molybdopterin-guanine 26.9 83 0.0018 26.7 3.6 22 113-134 7-31 (173)
168 PLN02199 shikimate kinase 26.5 4.5E+02 0.0097 24.6 8.6 22 111-132 101-125 (303)
169 cd01860 Rab5_related Rab5-rela 26.4 62 0.0013 25.1 2.6 19 115-133 4-25 (163)
170 PTZ00133 ADP-ribosylation fact 26.4 76 0.0017 26.0 3.3 18 114-131 19-39 (182)
171 PRK05416 glmZ(sRNA)-inactivati 26.2 5.1E+02 0.011 23.7 9.1 19 112-130 6-27 (288)
172 cd04162 Arl9_Arfrp2_like Arl9/ 26.2 72 0.0016 25.5 3.0 18 115-132 2-22 (164)
173 cd04159 Arl10_like Arl10-like 26.0 57 0.0012 24.6 2.3 18 115-132 2-22 (159)
174 cd04111 Rab39 Rab39 subfamily. 26.0 76 0.0017 26.9 3.3 19 114-132 4-25 (211)
175 cd04149 Arf6 Arf6 subfamily. 25.9 77 0.0017 25.5 3.2 18 114-131 11-31 (168)
176 PF00004 AAA: ATPase family as 25.9 77 0.0017 23.6 3.0 19 115-133 1-22 (132)
177 cd04101 RabL4 RabL4 (Rab-like4 25.8 74 0.0016 24.8 3.0 17 115-131 3-22 (164)
178 KOG0745|consensus 25.6 96 0.0021 31.0 4.2 98 113-219 227-336 (564)
179 PF03464 eRF1_2: eRF1 domain 2 25.6 56 0.0012 26.0 2.2 26 109-134 71-98 (133)
180 cd01128 rho_factor Transcripti 25.5 2.3E+02 0.0051 25.2 6.4 28 108-135 12-42 (249)
181 cd00878 Arf_Arl Arf (ADP-ribos 25.4 88 0.0019 24.2 3.3 20 115-134 2-24 (158)
182 smart00175 RAB Rab subfamily o 25.3 66 0.0014 24.8 2.6 18 115-132 3-23 (164)
183 PRK06696 uridine kinase; Valid 25.2 55 0.0012 28.1 2.3 26 110-135 20-48 (223)
184 COG1100 GTPase SAR1 and relate 25.2 67 0.0014 26.6 2.7 21 113-133 6-29 (219)
185 PRK06547 hypothetical protein; 24.9 67 0.0014 26.9 2.7 24 110-133 13-39 (172)
186 cd01428 ADK Adenylate kinase ( 24.8 74 0.0016 25.9 2.9 19 115-133 2-23 (194)
187 PF03205 MobB: Molybdopterin g 24.8 70 0.0015 25.8 2.7 20 115-134 3-25 (140)
188 cd01870 RhoA_like RhoA-like su 24.6 76 0.0016 25.1 2.9 20 113-132 2-24 (175)
189 COG1126 GlnQ ABC-type polar am 24.5 63 0.0014 29.3 2.5 22 110-131 26-50 (240)
190 cd04109 Rab28 Rab28 subfamily. 24.4 78 0.0017 26.7 3.0 18 115-132 3-23 (215)
191 cd04120 Rab12 Rab12 subfamily. 24.3 85 0.0019 26.7 3.3 19 114-132 2-23 (202)
192 TIGR03598 GTPase_YsxC ribosome 24.2 1.1E+02 0.0023 24.9 3.7 23 110-132 16-41 (179)
193 cd02019 NK Nucleoside/nucleoti 24.1 91 0.002 21.7 2.9 19 115-133 2-23 (69)
194 cd04171 SelB SelB subfamily. 24.0 71 0.0015 24.6 2.6 19 114-132 2-23 (164)
195 COG1162 Predicted GTPases [Gen 23.9 61 0.0013 30.3 2.4 22 111-132 163-187 (301)
196 cd04146 RERG_RasL11_like RERG/ 23.8 74 0.0016 25.0 2.6 17 115-131 2-21 (165)
197 cd01862 Rab7 Rab7 subfamily. 23.7 73 0.0016 24.9 2.6 18 115-132 3-23 (172)
198 smart00177 ARF ARF-like small 23.7 99 0.0021 25.0 3.4 32 113-147 14-48 (175)
199 cd04157 Arl6 Arl6 subfamily. 23.6 87 0.0019 24.2 3.0 18 115-132 2-22 (162)
200 PF10662 PduV-EutP: Ethanolami 23.4 66 0.0014 26.7 2.3 19 114-132 3-24 (143)
201 PRK03839 putative kinase; Prov 23.3 86 0.0019 25.5 3.0 20 114-133 2-24 (180)
202 cd04154 Arl2 Arl2 subfamily. 23.3 1.1E+02 0.0024 24.4 3.6 20 113-132 15-37 (173)
203 cd01865 Rab3 Rab3 subfamily. 23.3 79 0.0017 25.0 2.7 18 115-132 4-24 (165)
204 PF13191 AAA_16: AAA ATPase do 23.2 82 0.0018 25.1 2.8 27 109-135 21-50 (185)
205 COG2093 DNA-directed RNA polym 23.1 72 0.0016 23.2 2.1 30 112-141 34-63 (64)
206 PRK12289 GTPase RsgA; Reviewed 23.1 64 0.0014 30.4 2.5 21 112-132 172-195 (352)
207 PF09439 SRPRB: Signal recogni 23.0 82 0.0018 27.0 2.9 22 111-132 2-26 (181)
208 PF08331 DUF1730: Domain of un 22.9 58 0.0013 23.8 1.7 13 145-157 45-59 (78)
209 cd04139 RalA_RalB RalA/RalB su 22.8 81 0.0018 24.3 2.7 18 115-132 3-23 (164)
210 cd00154 Rab Rab family. Rab G 22.8 92 0.002 23.3 2.9 18 115-132 3-23 (159)
211 cd04123 Rab21 Rab21 subfamily. 22.7 83 0.0018 24.1 2.7 18 115-132 3-23 (162)
212 TIGR01284 alt_nitrog_alph nitr 22.5 7E+02 0.015 24.1 9.5 114 116-230 104-244 (457)
213 cd04129 Rho2 Rho2 subfamily. 22.3 94 0.002 25.4 3.1 22 114-135 3-28 (187)
214 PRK13342 recombination factor 22.3 5.2E+02 0.011 24.4 8.4 27 111-137 35-64 (413)
215 TIGR00157 ribosome small subun 22.2 85 0.0018 27.7 2.9 21 112-132 120-143 (245)
216 TIGR00073 hypB hydrogenase acc 22.1 88 0.0019 26.4 2.9 27 108-134 18-47 (207)
217 cd00157 Rho Rho (Ras homology) 22.0 88 0.0019 24.4 2.7 18 115-132 3-23 (171)
218 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 21.8 85 0.0019 24.6 2.6 18 115-132 5-25 (166)
219 cd04108 Rab36_Rab34 Rab34/Rab3 21.8 1E+02 0.0022 24.8 3.2 18 115-132 3-23 (170)
220 PF13177 DNA_pol3_delta2: DNA 21.7 4.5E+02 0.0097 21.4 9.9 98 113-219 20-136 (162)
221 PF00685 Sulfotransfer_1: Sulf 21.6 63 0.0014 27.1 1.9 28 112-139 1-30 (267)
222 cd04118 Rab24 Rab24 subfamily. 21.6 92 0.002 25.3 2.9 18 115-132 3-23 (193)
223 cd04155 Arl3 Arl3 subfamily. 21.6 82 0.0018 24.8 2.5 20 113-132 15-37 (173)
224 cd01972 Nitrogenase_VnfE_like 21.5 7E+02 0.015 23.7 9.2 114 117-230 70-211 (426)
225 PF01596 Methyltransf_3: O-met 21.3 3.3E+02 0.0072 23.5 6.4 72 150-229 36-112 (205)
226 PRK08154 anaerobic benzoate ca 21.2 5.9E+02 0.013 23.1 8.3 24 110-133 131-157 (309)
227 COG1102 Cmk Cytidylate kinase 21.0 1.1E+02 0.0023 26.6 3.1 91 115-224 3-102 (179)
228 PRK05480 uridine/cytidine kina 21.0 1.2E+02 0.0027 25.3 3.6 24 111-134 5-31 (209)
229 KOG1970|consensus 20.9 1.7E+02 0.0036 30.0 4.9 23 111-133 109-134 (634)
230 cd01864 Rab19 Rab19 subfamily. 20.8 92 0.002 24.4 2.6 20 112-131 3-25 (165)
231 COG1550 Uncharacterized protei 20.6 75 0.0016 24.9 1.9 31 115-145 10-44 (95)
232 cd04127 Rab27A Rab27a subfamil 20.6 91 0.002 24.8 2.6 17 115-131 7-26 (180)
233 PRK14526 adenylate kinase; Pro 20.5 5.5E+02 0.012 22.1 7.6 19 115-133 3-24 (211)
234 cd04115 Rab33B_Rab33A Rab33B/R 20.5 95 0.002 24.7 2.7 19 114-132 4-25 (170)
235 PRK08351 DNA-directed RNA poly 20.3 81 0.0017 22.7 1.9 29 113-141 32-60 (61)
236 CHL00076 chlB photochlorophyll 20.1 4.1E+02 0.0088 26.3 7.4 114 115-230 64-212 (513)
237 cd04145 M_R_Ras_like M-Ras/R-R 20.1 1E+02 0.0022 23.8 2.8 18 115-132 5-25 (164)
238 cd01863 Rab18 Rab18 subfamily. 20.0 1.1E+02 0.0023 23.7 2.9 18 115-132 3-23 (161)
No 1
>KOG0609|consensus
Probab=100.00 E-value=2.2e-51 Score=391.15 Aligned_cols=207 Identities=23% Similarity=0.377 Sum_probs=182.3
Q ss_pred EEeeeccccccCCCCCCCCCCCCCccCCCCccc--------cccccccccCCCCccceeeec------------------
Q psy10229 11 FMGKCKTRFFDRKNSYLPMNPGLNSIFSFPPIL--------EWHGRKKKMSRNNTAKITFRG------------------ 64 (231)
Q Consensus 11 ~~~~~~~~~~~~~~~~~p~~~~~gl~F~~gdil--------~Wwqa~~~~~~~~~~~~~l~~------------------ 64 (231)
..++|+|||.+.+|++.||. |+||+|++|||| +||||+++++. ....+||+.
T Consensus 215 ~~vra~FdYdP~~D~~IPCk-Eagl~F~~GDILqIv~qdD~nWWQA~~~~~~-~~~~AGLiPS~~~qerr~a~~~~~~~~ 292 (542)
T KOG0609|consen 215 VFVRALFDYDPKEDDLIPCK-EAGLPFQRGDILQIVSQDDPNWWQARRVGDP-FGGLAGLIPSKELQERRVACLRREVSK 292 (542)
T ss_pred eeehhhcCcCcccCCcccch-hcCCcccccceeeeccCCCcchhhhhcccCc-cccccccccCHHHHHHHHHHHhhhccc
Confidence 34689999999999999999 899999999999 69999999874 223455521
Q ss_pred -cc--ccccccccCCCCCCCCCCCCCCCCCCCCCcceecceeeeeccCCCCceEEEECCC---hHHHHHHHHhhCCCCcc
Q psy10229 65 -KC--KTRFFDRKNSYLPMNPGLNSIFSFPPGTEEGVLSYEPVTQMQIDYARPVIILGPL---KDRINDDLISEFPEQFG 138 (231)
Q Consensus 65 -~~--r~~~~~rk~~~~~~~~~l~~~~~~~~~~~~~~~~Ye~V~~~~~~~~RpVVL~GPs---k~~l~~~Ll~~~P~~F~ 138 (231)
.. +|..+.+|++.. ..+++.+++ +.++..++++||+|++|+++.+|+|||+||. ...|+++|+..+|+.|+
T Consensus 293 ~~~~~~c~~l~kkkk~~-~~~y~~~~~--~~~d~~~~~tYEEV~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~ 369 (542)
T KOG0609|consen 293 EPEKTRCQRLSKKKKKK-KSKYLGKHS--AVFDQPELLTYEEVVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFG 369 (542)
T ss_pred CCcCchhcccchhhhhh-hhhhhhhcc--hhhhccccccHHHHhhhcccccceEEEECCcccchHHHHHHHHhhCccccc
Confidence 11 445555555533 223555554 5899999999999999999999999999999 88999999999999999
Q ss_pred cccCCC----------CCcchhH--HHHHHHHhc-cCceeEEeccCCccc----hHHHHHHHhcCCCCCCCcEEEEEecH
Q psy10229 139 SCVPPL----------GKMYDRS--MKMEQEFGE-FFTAVVQGDMPEDIY----QKVKEVIQEQSGPSIWGKHCILDVSG 201 (231)
Q Consensus 139 ~~vp~T----------G~dY~FV--e~fe~~i~~-~Fd~iE~g~~~g~~Y----~sV~~v~~~~~~~~~wGk~cILDv~~ 201 (231)
++|||| |++|||| ++|+++|.+ +| +|||+|.||+| ++|+.++++ ||+||||++|
T Consensus 370 ~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~--lE~GEy~~nlYGTs~dsVr~v~~~-------gKicvLdv~P 440 (542)
T KOG0609|consen 370 TAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKF--LEYGEYEGNLYGTSLDSVRNVIAS-------GKICVLDVEP 440 (542)
T ss_pred cCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcCCc--eecCcchhccccchHHHHHHHHHh-------CCEEEEecCH
Confidence 999999 9999999 999999999 99 99999999999 999999999 9999999999
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCHHHHhhcC
Q psy10229 202 NAIKRLQVASLYPVAIFIKPKSVESIICRR 231 (231)
Q Consensus 202 qgvk~Lr~~~~~PivIFI~ppS~e~L~~~r 231 (231)
|+++.||+++|.|+||||+||+++.++++|
T Consensus 441 qalk~lRt~Ef~PyVIFI~pP~~~~~r~~r 470 (542)
T KOG0609|consen 441 QALKVLRTAEFKPYVIFIAPPSLEELRALR 470 (542)
T ss_pred HHhhhhhhhcccceEEEecCCCchhHHHHh
Confidence 999999999999999999999999998876
No 2
>KOG0708|consensus
Probab=100.00 E-value=7.8e-35 Score=268.62 Aligned_cols=190 Identities=35% Similarity=0.605 Sum_probs=157.4
Q ss_pred CCCCccCCCCccc--------cccccccccCCCCccceeee----cccccccccccCCCC-CC--CCC-CC------CCC
Q psy10229 31 PGLNSIFSFPPIL--------EWHGRKKKMSRNNTAKITFR----GKCKTRFFDRKNSYL-PM--NPG-LN------SIF 88 (231)
Q Consensus 31 ~~~gl~F~~gdil--------~Wwqa~~~~~~~~~~~~~l~----~~~r~~~~~rk~~~~-~~--~~~-l~------~~~ 88 (231)
+..++.|..|||+ +|||+|+.+..++....++. ...|+.++++|..+. .. .+. ++ ...
T Consensus 84 ~~~~~~~~~~~i~~~~~~~~~e~~~~r~~s~~~~~~~~~~~~~~~~~~rr~r~r~k~~~f~~~~~~~~~~s~d~~~~~~~ 163 (359)
T KOG0708|consen 84 YSRAQSFLYGQILHLISRSDDEWWQARHVSPRGEEKDVGLVPSKSRRARRVRLRLKRDSFNSGRDFPFLLSKDGLDMSSD 163 (359)
T ss_pred cchhhhhhhhhhhhccccccHHHHHhhccCCCcccccccccccccccccccccccccccccccCCcccccCccccccccc
Confidence 4779999999999 69999999887766666653 334666777764311 11 011 11 122
Q ss_pred CCCCCCCcceecceeeeeccCCCCceEEEECCChHHHHHHHHhhCCCCcccccCCCCCcchhHHHHHHHHhc-cCceeEE
Q psy10229 89 SFPPGTEEGVLSYEPVTQMQIDYARPVIILGPLKDRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQEFGE-FFTAVVQ 167 (231)
Q Consensus 89 ~~~~~~~~~~~~Ye~V~~~~~~~~RpVVL~GPsk~~l~~~Ll~~~P~~F~~~vp~TG~dY~FVe~fe~~i~~-~Fd~iE~ 167 (231)
.+..+.+..+++||.|.++.+.+.|||+|+||.++.|+++|+.++|++|+.|+|||-.- +-++|++++++ .| ||+
T Consensus 164 ~~~~~~e~~~lsY~~V~~~~~~~~RPVlilg~~~d~l~~~Lv~e~~~kF~~C~~~t~~~--~~~eme~~~k~~~f--I~~ 239 (359)
T KOG0708|consen 164 ENELGKELSLLSYELVERLDSNYLRPVLILGPLLDRLLDNLVNEFPDKFKSCLPETLRP--SREEMERDSKEETF--IDA 239 (359)
T ss_pred ccccccccccccchhhhhhhccccCceEeccchHHHHHHHHHHhhhccccccchhhhcc--cHHHhhhhcccCce--eee
Confidence 23456678899999999999999999999999999999999999999999999998110 13799999999 99 999
Q ss_pred eccCCccc----hHHHHHHHhcCCCCCCCcEEEEEecHHHHHHHHHcCCCcEEEEEcCCCHHHHhhcC
Q psy10229 168 GDMPEDIY----QKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIICRR 231 (231)
Q Consensus 168 g~~~g~~Y----~sV~~v~~~~~~~~~wGk~cILDv~~qgvk~Lr~~~~~PivIFI~ppS~e~L~~~r 231 (231)
|++++++| ++|++++++ |+||||||+.+|+++|+.+++|||+|||+|.|.+.+++++
T Consensus 240 ~q~~~~~~~tsv~si~~va~k-------~~HCiLdv~~~ai~rLq~~~IyPIvIfIr~ks~~~i~e~~ 300 (359)
T KOG0708|consen 240 GQRSNGLYGTSVASIREVAEK-------GKHCLLDVGGDAIRRLQRNQIYPIVIFIRVKSKKQIKERN 300 (359)
T ss_pred cccCCCcceehHHHHHHHhcC-------CCceEEecCcchHHHHHhcceeceEEEEEechHHHHHHHh
Confidence 99999999 899999999 9999999999999999999999999999999999999874
No 3
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.95 E-value=4.6e-28 Score=203.10 Aligned_cols=111 Identities=37% Similarity=0.692 Sum_probs=106.0
Q ss_pred CCceEEEECCC---hHHHHHHHHhhCCCCcccccCCC----------CCcchhH--HHHHHHHhc-cCceeEEeccCCcc
Q psy10229 111 YARPVIILGPL---KDRINDDLISEFPEQFGSCVPPL----------GKMYDRS--MKMEQEFGE-FFTAVVQGDMPEDI 174 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~T----------G~dY~FV--e~fe~~i~~-~Fd~iE~g~~~g~~ 174 (231)
.+|||||+||+ |++|.++|++.+|++|+.+++|| |++|||| ++|++++++ +| +||++|.|++
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~f--ie~~~~~g~~ 78 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEF--IEYGEYDGNY 78 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHE--EEEEEETTEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccE--EEEeeecchh
Confidence 36999999999 99999999999999999999999 9999999 999999999 99 9999999999
Q ss_pred c----hHHHHHHHhcCCCCCCCcEEEEEecHHHHHHHHHcCCCcEEEEEcCCCHHHHhhc
Q psy10229 175 Y----QKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIICR 230 (231)
Q Consensus 175 Y----~sV~~v~~~~~~~~~wGk~cILDv~~qgvk~Lr~~~~~PivIFI~ppS~e~L~~~ 230 (231)
| ++|++++++ |++||||++++|+++|+...++|++|||.|||.++|+++
T Consensus 79 YGt~~~~i~~~~~~-------gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~ 131 (183)
T PF00625_consen 79 YGTSKSAIDKVLEE-------GKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRR 131 (183)
T ss_dssp EEEEHHHHHHHHHT-------TTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHH
T ss_pred hhhccchhhHhhhc-------CCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHH
Confidence 9 899999999 999999999999999999999999999999999999864
No 4
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.93 E-value=8.3e-26 Score=190.07 Aligned_cols=110 Identities=34% Similarity=0.690 Sum_probs=105.8
Q ss_pred CceEEEECCC---hHHHHHHHHhhCCCCcccccCCC----------CCcchhH--HHHHHHHhc-cCceeEEeccCCccc
Q psy10229 112 ARPVIILGPL---KDRINDDLISEFPEQFGSCVPPL----------GKMYDRS--MKMEQEFGE-FFTAVVQGDMPEDIY 175 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~T----------G~dY~FV--e~fe~~i~~-~Fd~iE~g~~~g~~Y 175 (231)
+|||||+||| |++|.++|++.+|+.|..+++|| |++|+|| ++|++++++ +| +||+++.|++|
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~f--ve~~~~~g~~Y 79 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLF--LEWGEYSGNYY 79 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCe--EEEEEEcCcCc
Confidence 6899999999 99999999999999999999999 8999999 999999999 99 99999999999
Q ss_pred ----hHHHHHHHhcCCCCCCCcEEEEEecHHHHHHHHHcCCCcEEEEEcCCCHHHHhhc
Q psy10229 176 ----QKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIICR 230 (231)
Q Consensus 176 ----~sV~~v~~~~~~~~~wGk~cILDv~~qgvk~Lr~~~~~PivIFI~ppS~e~L~~~ 230 (231)
++|++++++ |++||||++++|+++|+...++|++|||.|||.++|+++
T Consensus 80 Gt~~~~i~~~~~~-------~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~r 131 (184)
T smart00072 80 GTSKETIRQVAEQ-------GKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERR 131 (184)
T ss_pred ccCHHHHHHHHHc-------CCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHH
Confidence 789999999 999999999999999999999999999999999988864
No 5
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.93 E-value=6.1e-26 Score=194.31 Aligned_cols=109 Identities=23% Similarity=0.333 Sum_probs=103.7
Q ss_pred CCceEEEECCC---hHHHHHHHHhhCCCCcccccCCC----------CCcchhH--HHHHHHHhc-cCceeEEeccCCcc
Q psy10229 111 YARPVIILGPL---KDRINDDLISEFPEQFGSCVPPL----------GKMYDRS--MKMEQEFGE-FFTAVVQGDMPEDI 174 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~T----------G~dY~FV--e~fe~~i~~-~Fd~iE~g~~~g~~ 174 (231)
..+++||+||| |+||.++|++.+ .|.+||||| |+||||| ++|+++|++ +| |||++|+||+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~f--LE~a~~~gny 78 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEF--LEWAEYHGNY 78 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCc--EEEEEEcCCc
Confidence 56889999999 999999999987 788999999 9999999 999999999 99 9999999999
Q ss_pred c----hHHHHHHHhcCCCCCCCcEEEEEecHHHHHHHHHcCCCcEEEEEcCCCHHHHhhc
Q psy10229 175 Y----QKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIICR 230 (231)
Q Consensus 175 Y----~sV~~v~~~~~~~~~wGk~cILDv~~qgvk~Lr~~~~~PivIFI~ppS~e~L~~~ 230 (231)
| ..|++++++ |++||||||+||++++|......+.|||.|||+++|++.
T Consensus 79 YGT~~~~ve~~~~~-------G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~R 131 (191)
T COG0194 79 YGTSREPVEQALAE-------GKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERR 131 (191)
T ss_pred ccCcHHHHHHHHhc-------CCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHH
Confidence 9 889999999 999999999999999999988999999999999999863
No 6
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.92 E-value=3.7e-25 Score=188.34 Aligned_cols=110 Identities=23% Similarity=0.310 Sum_probs=101.4
Q ss_pred CCceEEEECCC---hHHHHHHHHhhCCCCcccccCCC----------CCcchhH--HHHHHHHhc-cCceeEEeccCCcc
Q psy10229 111 YARPVIILGPL---KDRINDDLISEFPEQFGSCVPPL----------GKMYDRS--MKMEQEFGE-FFTAVVQGDMPEDI 174 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~T----------G~dY~FV--e~fe~~i~~-~Fd~iE~g~~~g~~ 174 (231)
.+++|||+||| |++|+++|++.+|+. .++++|| |+||||| ++|+++|++ +| +||++|+||+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~-~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f--~e~~~~~g~~ 79 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDF-LFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEF--LEWAEVHDNY 79 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCcc-ccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCe--EEEEEECCee
Confidence 46889999999 999999999999975 5789999 8999999 999999999 99 9999999999
Q ss_pred c----hHHHHHHHhcCCCCCCCcEEEEEecHHHHHHHHHcCCCc-EEEEEcCCCHHHHhhc
Q psy10229 175 Y----QKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYP-VAIFIKPKSVESIICR 230 (231)
Q Consensus 175 Y----~sV~~v~~~~~~~~~wGk~cILDv~~qgvk~Lr~~~~~P-ivIFI~ppS~e~L~~~ 230 (231)
| ++|++++++ |++||||++++|++.|+.....+ ++|||.|||.+.++++
T Consensus 80 YGt~~~~i~~~~~~-------g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~R 133 (186)
T PRK14737 80 YGTPKAFIEDAFKE-------GRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEER 133 (186)
T ss_pred ecCcHHHHHHHHHc-------CCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHH
Confidence 9 889999999 99999999999999999876555 8999999999988753
No 7
>PLN02772 guanylate kinase
Probab=99.92 E-value=1.2e-24 Score=204.41 Aligned_cols=120 Identities=30% Similarity=0.492 Sum_probs=112.7
Q ss_pred ceeeeecc---CC-CCceEEEECCC---hHHHHHHHHhhCCCCcccccCCC----------CCcchhH--HHHHHHHhc-
Q psy10229 101 YEPVTQMQ---ID-YARPVIILGPL---KDRINDDLISEFPEQFGSCVPPL----------GKMYDRS--MKMEQEFGE- 160 (231)
Q Consensus 101 Ye~V~~~~---~~-~~RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~T----------G~dY~FV--e~fe~~i~~- 160 (231)
=|+|++++ ++ .++||||+||| |++|+++|++++|..|+++++|| |+||||+ ++|++++++
T Consensus 120 ~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g 199 (398)
T PLN02772 120 GTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDG 199 (398)
T ss_pred cceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhC
Confidence 57788777 33 77899999999 99999999999999999999999 8999999 899999999
Q ss_pred cCceeEEeccCCccc----hHHHHHHHhcCCCCCCCcEEEEEecHHHHHHHHHcCCCcEEEEEcCCCHHHHhh
Q psy10229 161 FFTAVVQGDMPEDIY----QKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIIC 229 (231)
Q Consensus 161 ~Fd~iE~g~~~g~~Y----~sV~~v~~~~~~~~~wGk~cILDv~~qgvk~Lr~~~~~PivIFI~ppS~e~L~~ 229 (231)
+| +||++++||+| ++|++++++ |++||||+|++|+++|++..+.+++|||.|||+++|++
T Consensus 200 ~F--lE~~e~~Gn~YGTsk~~V~~vl~~-------Gk~vILdLD~qGar~Lr~~~l~~v~IFI~PPSlEeLe~ 263 (398)
T PLN02772 200 KF--LEFASVHGNLYGTSIEAVEVVTDS-------GKRCILDIDVQGARSVRASSLEAIFIFICPPSMEELEK 263 (398)
T ss_pred cc--ceeeeecCccccccHHHHHHHHHh-------CCcEEEeCCHHHHHHHHHhcCCeEEEEEeCCCHHHHHH
Confidence 99 99999999999 889999999 99999999999999999998999999999999999986
No 8
>KOG0707|consensus
Probab=99.84 E-value=2.2e-21 Score=170.54 Aligned_cols=114 Identities=26% Similarity=0.425 Sum_probs=107.9
Q ss_pred ccCCCCceEEEECCC---hHHHHHHHHhhCCCCcccccCCC----------CCcchhH--HHHHHHHhc-cCceeEEecc
Q psy10229 107 MQIDYARPVIILGPL---KDRINDDLISEFPEQFGSCVPPL----------GKMYDRS--MKMEQEFGE-FFTAVVQGDM 170 (231)
Q Consensus 107 ~~~~~~RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~T----------G~dY~FV--e~fe~~i~~-~Fd~iE~g~~ 170 (231)
.++..-+||||+||+ +.++..+|++++|..|+++|+|| |++|||+ ++|+.++++ +| +|+..+
T Consensus 32 ~~p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~f--iE~a~~ 109 (231)
T KOG0707|consen 32 TPPGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEF--IEFATF 109 (231)
T ss_pred cCCCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhh--hhhhhh
Confidence 345666999999999 99999999999999999999999 9999999 999999999 99 999999
Q ss_pred CCccc----hHHHHHHHhcCCCCCCCcEEEEEecHHHHHHHHHcCCCcEEEEEcCCCHHHHhh
Q psy10229 171 PEDIY----QKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIIC 229 (231)
Q Consensus 171 ~g~~Y----~sV~~v~~~~~~~~~wGk~cILDv~~qgvk~Lr~~~~~PivIFI~ppS~e~L~~ 229 (231)
.||+| ++|+++... |+.|+|||+.||+..++...+++++|||.||+.+.+++
T Consensus 110 ~gn~yGtsi~av~~~~~~-------gk~~ildId~qg~~~i~~~~~~~i~i~~~pps~~~~e~ 165 (231)
T KOG0707|consen 110 SGNKYGTSIAAVQRLMLS-------GKVCILDIDLQGVQPIRATSLDAIYIFIKPPSIKILEE 165 (231)
T ss_pred hcccCCchHHHHHHHHhc-------CCcceeehhhcCceeeecCCCceEEEEecCCcchhHHH
Confidence 99999 689999999 99999999999999999999999999999999988875
No 9
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.81 E-value=1.9e-19 Score=154.66 Aligned_cols=111 Identities=18% Similarity=0.254 Sum_probs=101.7
Q ss_pred CCCCceEEEECCC---hHHHHHHHHhhCCCCcccccCCC----------CCcchhH--HHHHHHHhc-cCceeEEeccCC
Q psy10229 109 IDYARPVIILGPL---KDRINDDLISEFPEQFGSCVPPL----------GKMYDRS--MKMEQEFGE-FFTAVVQGDMPE 172 (231)
Q Consensus 109 ~~~~RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~T----------G~dY~FV--e~fe~~i~~-~Fd~iE~g~~~g 172 (231)
++.++.|||+||| |++|++.|.+..+ .|.++++|| |++|||| ++|++++.+ .| +||+++.|
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~--le~~~~~g 86 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNEL--LEWAEVYG 86 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCc--EEEEEEcC
Confidence 5678999999999 9999999987655 688899988 8999999 899999998 99 99999999
Q ss_pred ccc----hHHHHHHHhcCCCCCCCcEEEEEecHHHHHHHHHcCCCcEEEEEcCCCHHHHhh
Q psy10229 173 DIY----QKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIIC 229 (231)
Q Consensus 173 ~~Y----~sV~~v~~~~~~~~~wGk~cILDv~~qgvk~Lr~~~~~PivIFI~ppS~e~L~~ 229 (231)
++| ++|++++++ |++||||++++|++.|+...+.+++||+.|||.++|++
T Consensus 87 ~~YGt~~~~i~~~~~~-------g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~ 140 (206)
T PRK14738 87 NYYGVPKAPVRQALAS-------GRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTR 140 (206)
T ss_pred ceecCCHHHHHHHHHc-------CCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHH
Confidence 999 789999999 99999999999999999887788999999999887765
No 10
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.78 E-value=1.5e-18 Score=140.60 Aligned_cols=101 Identities=26% Similarity=0.431 Sum_probs=95.6
Q ss_pred eEEEECCC---hHHHHHHHHhhCCCCcccccCCC----------CCcchhH--HHHHHHHhc-cCceeEEeccCCccc--
Q psy10229 114 PVIILGPL---KDRINDDLISEFPEQFGSCVPPL----------GKMYDRS--MKMEQEFGE-FFTAVVQGDMPEDIY-- 175 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~T----------G~dY~FV--e~fe~~i~~-~Fd~iE~g~~~g~~Y-- 175 (231)
+|+|+||+ |++|.+.|.+.+|..|..+++|| |++|+|+ ++|.+++.+ .| +|++++.|++|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f--~e~~~~~~~~yg~ 78 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEF--LEWAEFHGNYYGT 78 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCe--EEEEEEcCEEecC
Confidence 68999999 99999999999998899999987 8999999 899999999 99 99999999999
Q ss_pred --hHHHHHHHhcCCCCCCCcEEEEEecHHHHHHHHHcCCCcEEEEEcCCC
Q psy10229 176 --QKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPKS 223 (231)
Q Consensus 176 --~sV~~v~~~~~~~~~wGk~cILDv~~qgvk~Lr~~~~~PivIFI~ppS 223 (231)
++|++++++ |++||||++++|+++|+...+.|++|||.||+
T Consensus 79 ~~~~i~~~~~~-------g~~~il~~~~~~~~~l~~~~~~~~~I~i~~~~ 121 (137)
T cd00071 79 SKAAVEEALAE-------GKIVILEIDVQGARQVKKSYPDAVSIFILPPD 121 (137)
T ss_pred cHHHHHHHHhC-------CCeEEEEecHHHHHHHHHcCCCeEEEEEECCC
Confidence 779999999 99999999999999999999999999999993
No 11
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.59 E-value=1.3e-14 Score=119.90 Aligned_cols=107 Identities=22% Similarity=0.354 Sum_probs=96.3
Q ss_pred ceEEEECCC---hHHHHHHHHhhCCCCcccccCCC----------CCcchhH--HHHHHHHhc-cCceeEEeccCCccc-
Q psy10229 113 RPVIILGPL---KDRINDDLISEFPEQFGSCVPPL----------GKMYDRS--MKMEQEFGE-FFTAVVQGDMPEDIY- 175 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~T----------G~dY~FV--e~fe~~i~~-~Fd~iE~g~~~g~~Y- 175 (231)
++|+|+||+ |++|.+.|...+|. +..++++| |.+|+|+ ++|++++.. .| ++++.+.+++|
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~-~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~y~ 78 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN-LKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEF--LEWAEVHGNYYG 78 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc-ccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCc--EEEEEECCeeeC
Confidence 689999999 99999999998887 44666665 7899999 789999999 99 99999999999
Q ss_pred ---hHHHHHHHhcCCCCCCCcEEEEEecHHHHHHHHHcCCCcEEEEEcCCCHHHHhh
Q psy10229 176 ---QKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIIC 229 (231)
Q Consensus 176 ---~sV~~v~~~~~~~~~wGk~cILDv~~qgvk~Lr~~~~~PivIFI~ppS~e~L~~ 229 (231)
++|++++++ |++||||+++++++.++.....|+.||+.||+.+.+++
T Consensus 79 ~~~~~i~~~~~~-------g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~ 128 (180)
T TIGR03263 79 TPKSPVEEALAA-------GKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELER 128 (180)
T ss_pred CcHHHHHHHHHC-------CCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHH
Confidence 778999999 99999999999999999998889999999999888865
No 12
>KOG3580|consensus
Probab=99.59 E-value=6.6e-16 Score=150.32 Aligned_cols=109 Identities=29% Similarity=0.566 Sum_probs=92.8
Q ss_pred CcceecceeeeeccCCCCceEEEECCChHHHHHHHHhhCCCCcccccCCC---CCcchhHHHHHHHHhccCceeEEeccC
Q psy10229 95 EEGVLSYEPVTQMQIDYARPVIILGPLKDRINDDLISEFPEQFGSCVPPL---GKMYDRSMKMEQEFGEFFTAVVQGDMP 171 (231)
Q Consensus 95 ~~~~~~Ye~V~~~~~~~~RpVVL~GPsk~~l~~~Ll~~~P~~F~~~vp~T---G~dY~FVe~fe~~i~~~Fd~iE~g~~~ 171 (231)
+.-.++||+|+...+++.|||||+||..+..+++|..+.||.|..+-+.. |- | ...
T Consensus 614 qtkfPaYERVvLREAgFkRPVvifGPiADiAmeKLa~E~PD~fqiAkteprdag~-------------------~--~st 672 (1027)
T KOG3580|consen 614 QTKFPAYERVVLREAGFKRPVVIFGPIADIAMEKLANELPDWFQIAKTEPRDAGS-------------------E--KST 672 (1027)
T ss_pred cccCCchhhhhhhhhcccCceEEeccHHHHHHHHHhhhCcchhhhhccccccCCc-------------------c--ccc
Confidence 44568999999999999999999999999999999999999997664332 21 1 011
Q ss_pred Ccc-chHHHHHHHhcCCCCCCCcEEEEEecHHHHHHHHHcCCCcEEEEEcCCCHHHHhhcC
Q psy10229 172 EDI-YQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIICRR 231 (231)
Q Consensus 172 g~~-Y~sV~~v~~~~~~~~~wGk~cILDv~~qgvk~Lr~~~~~PivIFI~ppS~e~L~~~r 231 (231)
|.. ..+|+.|+++ .||+||||.|+|+.+|...+.||||||+.|-|..-++.||
T Consensus 673 g~irL~Tvrqiieq-------DKHALLDVTP~AvdrLNY~QwypIVvff~PdSrqgvktmR 726 (1027)
T KOG3580|consen 673 GVIRLNTVRQIIEQ-------DKHALLDVTPKAVDRLNYTQWYPIVVFFNPDSRQGVKTMR 726 (1027)
T ss_pred ceEEehhhHHHHhc-------ccchhhccCHHHHhhhccceeeeEEEEeCCcchHHHHHHH
Confidence 111 2999999999 9999999999999999999999999999999999888876
No 13
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.56 E-value=5e-14 Score=118.96 Aligned_cols=109 Identities=21% Similarity=0.326 Sum_probs=98.6
Q ss_pred CCceEEEECCC---hHHHHHHHHhhCCCCcccccCCC----------CCcchhH--HHHHHHHhc-cCceeEEeccCCcc
Q psy10229 111 YARPVIILGPL---KDRINDDLISEFPEQFGSCVPPL----------GKMYDRS--MKMEQEFGE-FFTAVVQGDMPEDI 174 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~T----------G~dY~FV--e~fe~~i~~-~Fd~iE~g~~~g~~ 174 (231)
..+.|+|+||+ |++|.+.|...+| .|...+++| |.+|+|+ ++|.+.+.+ .| ++++++.++.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 80 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEF--LEWAEVFGNY 80 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCc--EEEEEECCcc
Confidence 45789999999 9999999999888 577777766 7899999 899999999 99 9999999999
Q ss_pred c----hHHHHHHHhcCCCCCCCcEEEEEecHHHHHHHHHcCCCcEEEEEcCCCHHHHhh
Q psy10229 175 Y----QKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIIC 229 (231)
Q Consensus 175 Y----~sV~~v~~~~~~~~~wGk~cILDv~~qgvk~Lr~~~~~PivIFI~ppS~e~L~~ 229 (231)
| .+|++++++ |++||+|++++++..|+.....+++||+.|++.+++++
T Consensus 81 y~~~~~~i~~~l~~-------g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~ 132 (205)
T PRK00300 81 YGTPRSPVEEALAA-------GKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELER 132 (205)
T ss_pred ccCcHHHHHHHHHc-------CCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHH
Confidence 8 779999999 99999999999999999988889999999999988775
No 14
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.91 E-value=1.7e-08 Score=83.55 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=82.6
Q ss_pred ceEEEECCC---hHHHHHHHHhhCCCC--cccccCCC-------CCcchhH--HHHHHHHhc-cCceeEEeccCCccc--
Q psy10229 113 RPVIILGPL---KDRINDDLISEFPEQ--FGSCVPPL-------GKMYDRS--MKMEQEFGE-FFTAVVQGDMPEDIY-- 175 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~P~~--F~~~vp~T-------G~dY~FV--e~fe~~i~~-~Fd~iE~g~~~g~~Y-- 175 (231)
+.++|+||+ |++|.+.|....+.. ..+.+++| |++|+|+ ++|..++.+ .| .++..+.+++|
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~ 79 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAF--ALSWQAHGLSYGI 79 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCE--EEEEeecCccccC
Confidence 468999999 999999998865432 23444554 8899999 889998888 89 99999988888
Q ss_pred -hHHHHHHHhcCCCCCCCcEEEEEecHHHHHHHHHcCCCcEEEEEcCCCHHHHh
Q psy10229 176 -QKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESII 228 (231)
Q Consensus 176 -~sV~~v~~~~~~~~~wGk~cILDv~~qgvk~Lr~~~~~PivIFI~ppS~e~L~ 228 (231)
..+...+++ |+.||+|.+.+....++......++||+.+ +.+.+.
T Consensus 80 ~~~i~~~~~~-------g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~-~~~~~~ 125 (179)
T TIGR02322 80 PAEIDQWLEA-------GDVVVVNGSRAVLPEARQRYPNLLVVNITA-SPDVLA 125 (179)
T ss_pred hHHHHHHHhc-------CCEEEEECCHHHHHHHHHHCCCcEEEEEEC-CHHHHH
Confidence 446667777 999999999988888876555668899985 445443
No 15
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.87 E-value=9.1e-09 Score=86.54 Aligned_cols=108 Identities=12% Similarity=0.078 Sum_probs=81.6
Q ss_pred ceEEEECCC---hHHHHHHHHhhCCCCcccccCCC-------CCcchhH--HHHHHHHhc-cCceeEEeccCCccc---h
Q psy10229 113 RPVIILGPL---KDRINDDLISEFPEQFGSCVPPL-------GKMYDRS--MKMEQEFGE-FFTAVVQGDMPEDIY---Q 176 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~T-------G~dY~FV--e~fe~~i~~-~Fd~iE~g~~~g~~Y---~ 176 (231)
..|+|+||+ |+||.+.|....+..|......+ +.+|+|+ ++|.+++++ .| .|+..++||+| .
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~yg~~~ 80 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLF--ALSWHANGLYYGVGI 80 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCch--hhHHHHhCCccCCcH
Confidence 578999999 99999999876543343333222 5678887 999999999 88 87778999999 6
Q ss_pred HHHHHHHhcCCCCCCCcEEEEEecHHHHHHHHHcCCCcEEEEEcCCCHHHHhh
Q psy10229 177 KVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIIC 229 (231)
Q Consensus 177 sV~~v~~~~~~~~~wGk~cILDv~~qgvk~Lr~~~~~PivIFI~ppS~e~L~~ 229 (231)
++++.++. |+++|++-..+....++.....+..|+..++|.+.+.+
T Consensus 81 ~~~~~l~~-------g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s~e~l~~ 126 (186)
T PRK10078 81 EIDLWLHA-------GFDVLVNGSRAHLPQARARYQSALLPVCLQVSPEILRQ 126 (186)
T ss_pred HHHHHHhC-------CCEEEEeChHHHHHHHHHHcCCCEEEEEEeCCHHHHHH
Confidence 79999988 99999988777777777764455555555566776653
No 16
>PRK08356 hypothetical protein; Provisional
Probab=98.17 E-value=9.8e-07 Score=74.85 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=65.6
Q ss_pred ceEEEECCC---hHHHHHHHHhhCCCCcccccCCC----------CCcchhH--HHHHHHHhc-cCceeEEeccCCccc-
Q psy10229 113 RPVIILGPL---KDRINDDLISEFPEQFGSCVPPL----------GKMYDRS--MKMEQEFGE-FFTAVVQGDMPEDIY- 175 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~T----------G~dY~FV--e~fe~~i~~-~Fd~iE~g~~~g~~Y- 175 (231)
..|+|+||+ |+|+.+.|. ++ .|. .++++ |++|+|+ ..|+.++.. .| +|+|.+.++.|
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~--g~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~--~e~g~~~~~~yG 79 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EK--GFC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENL--IELGRYLKEKYG 79 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HC--CCc-EEeCCCcccccccccccccccccHHHHhhccccccH--HHHHHHHHHhcC
Confidence 457899999 999999994 43 343 45555 7899999 667777877 99 99999999988
Q ss_pred hH--HHHHHHhcCCCCCCCcEEEEEecHHHHHHHHHc----CCCcEEEEEcCCCHH
Q psy10229 176 QK--VKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVA----SLYPVAIFIKPKSVE 225 (231)
Q Consensus 176 ~s--V~~v~~~~~~~~~wGk~cILDv~~qgvk~Lr~~----~~~PivIFI~ppS~e 225 (231)
.. ++.+++.. .|+.. +..+|++.+.++ ....++|||.+|...
T Consensus 80 ~~~~~~~~~~~~----~~~~~----ividG~r~~~q~~~l~~~~~~vi~l~~~~~~ 127 (195)
T PRK08356 80 EDILIRLAVDKK----RNCKN----IAIDGVRSRGEVEAIKRMGGKVIYVEAKPEI 127 (195)
T ss_pred cHHHHHHHHHHh----ccCCe----EEEcCcCCHHHHHHHHhcCCEEEEEECCHHH
Confidence 22 24444441 11233 333355555442 223578999888643
No 17
>KOG3812|consensus
Probab=97.91 E-value=4.1e-05 Score=71.71 Aligned_cols=207 Identities=16% Similarity=0.201 Sum_probs=106.9
Q ss_pred ceeEEEEeeeccccccCCCCCCCCCCCCCccCCCCccc--------cccccccccCCCCccceeeecccccc-ccccc--
Q psy10229 6 TARITFMGKCKTRFFDRKNSYLPMNPGLNSIFSFPPIL--------EWHGRKKKMSRNNTAKITFRGKCKTR-FFDRK-- 74 (231)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~gl~F~~gdil--------~Wwqa~~~~~~~~~~~~~l~~~~r~~-~~~rk-- 74 (231)
+--+.|.+.--.+|--.-|..-|.. +-+++|..-|.| .||-.|.+.+.. ..||+...++. -++-+
T Consensus 54 ~KpVAFAV~tnv~Y~gslde~~Pv~-g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~---e~gFiPsp~rLen~r~~~e 129 (475)
T KOG3812|consen 54 RKPVAFAVRTNVSYDGSLDEDSPVQ-GHAISFEAKDFLHIKEKYNNDWWIGRLVKEGC---EIGFIPSPVRLENIRLQQE 129 (475)
T ss_pred cCCceEEEEeccccCCccCCCCCCC-CceeeeccccceeehhhcccchhHHHHhhcCC---ccccccchHHHHHHHhhhh
Confidence 4456788877777777777777776 788999999999 399999986543 46665332211 00000
Q ss_pred -CCCCCCC-CCCCC--------CCCCC--C-CCCcceecceeeeeccCCCCceEEEECCC--hHHHHH----HHHhhCCC
Q psy10229 75 -NSYLPMN-PGLNS--------IFSFP--P-GTEEGVLSYEPVTQMQIDYARPVIILGPL--KDRIND----DLISEFPE 135 (231)
Q Consensus 75 -~~~~~~~-~~l~~--------~~~~~--~-~~~~~~~~Ye~V~~~~~~~~RpVVL~GPs--k~~l~~----~Ll~~~P~ 135 (231)
.....-+ ..+.. ++... + .-.+.+++|..|- .-|||||+||+ ...+.+ .|.+..-.
T Consensus 130 ~~~~~~~n~ssl~~vg~r~stpp~ta~~kd~~~~E~~pPYdVVP-----SmRPvVLvGPsLkgyevTdmmqkAlfd~lkh 204 (475)
T KOG3812|consen 130 QSSKSSGNSSSLGDVGSRRSTPPSTADQKDKSITEHVPPYDVVP-----SMRPVVLVGPSLKGYEVTDMMQKALFDFLKH 204 (475)
T ss_pred hhcccCCCccccCCcccCCCCCCChhhhhhhhhcccCCccccCC-----CCCceEEecCccccccHHHHHHHHHHHHHHH
Confidence 0000000 00100 00000 0 0134566777663 45999999999 222222 22222223
Q ss_pred CcccccCCCCCcchhH-HHH---HHH-Hhc--cCceeEEeccC--Cccc-hHHHHHHHhcCCCCCCCcEEEEEec-HHHH
Q psy10229 136 QFGSCVPPLGKMYDRS-MKM---EQE-FGE--FFTAVVQGDMP--EDIY-QKVKEVIQEQSGPSIWGKHCILDVS-GNAI 204 (231)
Q Consensus 136 ~F~~~vp~TG~dY~FV-e~f---e~~-i~~--~Fd~iE~g~~~--g~~Y-~sV~~v~~~~~~~~~wGk~cILDv~-~qgv 204 (231)
.|.--++-| .| ..+ .+. +.+ +-.++|-..-. +.-. +.|+.|++-. -.=..++||.+ .+--
T Consensus 205 rF~grisit-----rVtaDIslakrS~lnnp~k~~~~eRsn~RsslaevqsEiErIfela----rsLqLvvlDadtInhP 275 (475)
T KOG3812|consen 205 RFDGRISIT-----RVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELA----RSLQLVVLDADTINHP 275 (475)
T ss_pred hcCCceeEE-----EEeechhhhhhhhccCccceeeeeeccchhhHHHHHHHHHHHHHHH----hhceEEEecCCcCCCH
Confidence 454333333 11 000 011 111 11113321111 1111 4555555431 00356777754 3445
Q ss_pred HHHHHcCCCcEEEEEcCCCHHHHhhc
Q psy10229 205 KRLQVASLYPVAIFIKPKSVESIICR 230 (231)
Q Consensus 205 k~Lr~~~~~PivIFI~ppS~e~L~~~ 230 (231)
.+|....+.||+|||+-.|.+.|..+
T Consensus 276 aql~ktsLaPI~v~ikvSspKvLqrL 301 (475)
T KOG3812|consen 276 AQLAKTSLAPIIVYIKVSSPKVLQRL 301 (475)
T ss_pred HHhccCCCcceEEEEEeCCHHHHHHH
Confidence 67888889999999999999988753
No 18
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.29 E-value=0.00039 Score=57.78 Aligned_cols=106 Identities=20% Similarity=0.100 Sum_probs=61.3
Q ss_pred CceEEEECCC---hHHHHHHHHhhCCCCcccccCCCCCcchhH---HHHHHHHhc-cCce--eEEec-cCCccc----hH
Q psy10229 112 ARPVIILGPL---KDRINDDLISEFPEQFGSCVPPLGKMYDRS---MKMEQEFGE-FFTA--VVQGD-MPEDIY----QK 177 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~TG~dY~FV---e~fe~~i~~-~Fd~--iE~g~-~~g~~Y----~s 177 (231)
.+.|||+||+ |+|+.+.|.+..+..|- |-|+|+++. ..+...... .++. .|+.+ ..++.| ..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~----~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 77 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWL----HFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEA 77 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCcc----ccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHH
Confidence 4678999999 99999999988765441 336776554 222110001 1100 22211 223445 67
Q ss_pred HHHHHHhcCCCCCCCcEEEEEecHHHHHHHH----H-cCCCcEEEEEcCCCHHHHhh
Q psy10229 178 VKEVIQEQSGPSIWGKHCILDVSGNAIKRLQ----V-ASLYPVAIFIKPKSVESIIC 229 (231)
Q Consensus 178 V~~v~~~~~~~~~wGk~cILDv~~qgvk~Lr----~-~~~~PivIFI~ppS~e~L~~ 229 (231)
+.+.+++ |+.||+|....+...++ . .....+.|++.+|. +++.+
T Consensus 78 ~~~~l~~-------G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~-~~l~~ 126 (175)
T cd00227 78 VAAMARA-------GANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPG-EVAEG 126 (175)
T ss_pred HHHHHhC-------CCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCH-HHHHH
Confidence 8888888 99999997544322222 2 22245678888775 55544
No 19
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.19 E-value=0.00039 Score=64.05 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=65.6
Q ss_pred CceEEEECCC---hHHHHHHHHhhCCCC--------cccccCCC----------CCcchhH--HHHHHHHhc-cCceeEE
Q psy10229 112 ARPVIILGPL---KDRINDDLISEFPEQ--------FGSCVPPL----------GKMYDRS--MKMEQEFGE-FFTAVVQ 167 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~~P~~--------F~~~vp~T----------G~dY~FV--e~fe~~i~~-~Fd~iE~ 167 (231)
++.|+|+||+ |++|..+|.+.++.. +-..+++| |+.|||+ ..+++.+.. .| +|+
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f--~~~ 81 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADF--QRD 81 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHH--HHH
Confidence 4678999999 999999999886542 11223443 9999999 556666665 66 554
Q ss_pred eccCCccchHHHHHHHhcCCCCCCCcEEEEEecHHHHHHHHHcCCCcEEEEEcCCCHHHHhh
Q psy10229 168 GDMPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIIC 229 (231)
Q Consensus 168 g~~~g~~Y~sV~~v~~~~~~~~~wGk~cILDv~~qgvk~Lr~~~~~PivIFI~ppS~e~L~~ 229 (231)
+ .+.|++++++ |+++||+ ...++ ..++-+..+ +..||+.+++++
T Consensus 82 a------~~~i~~i~~~-------gk~pIlv-GGt~~--Y~~al~~g~--~~~p~~~~~~r~ 125 (307)
T PRK00091 82 A------LAAIADILAR-------GKLPILV-GGTGL--YIKALLEGL--SPLPPADPELRA 125 (307)
T ss_pred H------HHHHHHHHhC-------CCCEEEE-CcHHH--HHHHhccCC--CCCCCCCHHHHH
Confidence 3 3788899999 9999998 33332 122323333 267887766653
No 20
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.033 Score=47.98 Aligned_cols=101 Identities=14% Similarity=0.208 Sum_probs=75.8
Q ss_pred CCceEEEECCC---hHHHHHHHHhhCCCC--cccc---cCCC----CCcchhH--HHHHHHHhc-cCceeEEeccCCccc
Q psy10229 111 YARPVIILGPL---KDRINDDLISEFPEQ--FGSC---VPPL----GKMYDRS--MKMEQEFGE-FFTAVVQGDMPEDIY 175 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~~P~~--F~~~---vp~T----G~dY~FV--e~fe~~i~~-~Fd~iE~g~~~g~~Y 175 (231)
..+.|++.||| |++|++-+....+.. |-++ |+-+ |++-.-+ .+|.+.-.+ .| --+=+-+|..|
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~F--AlsWqAhGL~Y 81 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAF--ALSWQAHGLSY 81 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCce--eEEehhcCccc
Confidence 46889999999 999999887765543 2221 2222 4666666 889988888 88 55546678889
Q ss_pred ---hHHHHHHHhcCCCCCCCcEEEEEecHHHHHHHHHcCCCcEEEEEc
Q psy10229 176 ---QKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIK 220 (231)
Q Consensus 176 ---~sV~~v~~~~~~~~~wGk~cILDv~~qgvk~Lr~~~~~PivIFI~ 220 (231)
..|..-++. |..+|.+.+-..+-.+++.+..-.+|-|.
T Consensus 82 gip~eId~wl~~-------G~vvl~NgSRa~Lp~arrry~~Llvv~it 122 (192)
T COG3709 82 GIPAEIDLWLAA-------GDVVLVNGSRAVLPQARRRYPQLLVVCIT 122 (192)
T ss_pred cCchhHHHHHhC-------CCEEEEeccHhhhHHHHHhhhcceeEEEe
Confidence 899999999 99999999998888998876654555554
No 21
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=91.56 E-value=0.11 Score=44.75 Aligned_cols=79 Identities=16% Similarity=0.139 Sum_probs=47.4
Q ss_pred CCCCceEEEECCC---hHHHHHHHHhhCCCCcccccCCC-CCcchhHHHHHHHHhc---cCceeEEeccCCccchHHHHH
Q psy10229 109 IDYARPVIILGPL---KDRINDDLISEFPEQFGSCVPPL-GKMYDRSMKMEQEFGE---FFTAVVQGDMPEDIYQKVKEV 181 (231)
Q Consensus 109 ~~~~RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~T-G~dY~FVe~fe~~i~~---~Fd~iE~g~~~g~~Y~sV~~v 181 (231)
|++.+.|.|+||. |++|.++|... |..+...- |++|-| +....+ .+ .+|...----++.+...
T Consensus 5 p~F~K~VailG~ESsGKStLv~kLA~~----fnt~~~wEY~Re~v~----~~l~gdeal~y--~Dy~~ia~Gq~~~~d~a 74 (187)
T COG3172 5 PFFVKTVAILGGESSGKSTLVNKLANI----FNTTSAWEYGREYVF----EHLGGDEALQY--SDYAKIALGQAAYEDAA 74 (187)
T ss_pred hhhheeeeeecCcccChHHHHHHHHHH----hCCCchhHHHHHHHH----HHhCCchhhhh--ccHHHHHhhhHHHHHHH
Confidence 5788999999998 99999999875 44433322 665544 222222 22 33333221122555554
Q ss_pred HHhcCCCCCCCcEEEEEecHHH
Q psy10229 182 IQEQSGPSIWGKHCILDVSGNA 203 (231)
Q Consensus 182 ~~~~~~~~~wGk~cILDv~~qg 203 (231)
++.. .+++++|.|+=+
T Consensus 75 v~~a------~~v~fiDTD~it 90 (187)
T COG3172 75 VRYA------NKVAFIDTDFLT 90 (187)
T ss_pred HhCC------CceEEEeccHHH
Confidence 4443 799999987643
No 22
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=91.46 E-value=1.1 Score=38.08 Aligned_cols=99 Identities=17% Similarity=0.227 Sum_probs=55.3
Q ss_pred ceEEEECCC---hHHHHHHHHhhCCCCcccccCCCCCcchhH-HHHHHHHhc-cC---ceeEEec-------cCCcc---
Q psy10229 113 RPVIILGPL---KDRINDDLISEFPEQFGSCVPPLGKMYDRS-MKMEQEFGE-FF---TAVVQGD-------MPEDI--- 174 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~TG~dY~FV-e~fe~~i~~-~F---d~iE~g~-------~~g~~--- 174 (231)
+.|+|-||| |++|.+.|.+..|+-| +||- +.|..++-. .. +.++++. ....+
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~----------~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 71 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPW----------LHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAA 71 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-E----------EEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCe----------EEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHH
Confidence 678899999 9999999999888754 2232 555553332 11 2255541 11122
Q ss_pred -chHHHHHHHhcCCCCCCCcEEEEE-e--cHHH-HHHHHH--cCCCcEEEEEcCCCHHHHhh
Q psy10229 175 -YQKVKEVIQEQSGPSIWGKHCILD-V--SGNA-IKRLQV--ASLYPVAIFIKPKSVESIIC 229 (231)
Q Consensus 175 -Y~sV~~v~~~~~~~~~wGk~cILD-v--~~qg-vk~Lr~--~~~~PivIFI~ppS~e~L~~ 229 (231)
|.+|....+. |..+|+| + ++.. .+.++. .++...+|=|.+| .+++++
T Consensus 72 ~~~~iaa~a~a-------G~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cp-leil~~ 125 (174)
T PF07931_consen 72 MHAAIAAMARA-------GNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCP-LEILER 125 (174)
T ss_dssp HHHHHHHHHHT-------T-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE---HHHHHH
T ss_pred HHHHHHHHHhC-------CCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECC-HHHHHH
Confidence 2888888888 9999999 2 3332 455533 2444455556555 666654
No 23
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=90.68 E-value=0.11 Score=35.02 Aligned_cols=26 Identities=15% Similarity=0.371 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCccCCCCccc--------ccccccc
Q psy10229 24 NSYLPMNPGLNSIFSFPPIL--------EWHGRKK 50 (231)
Q Consensus 24 ~~~~p~~~~~gl~F~~gdil--------~Wwqa~~ 50 (231)
.+|.|..++ .|+|+.||++ .||.++.
T Consensus 3 ~~y~~~~~d-ELs~~~Gd~i~v~~~~~~~W~~g~~ 36 (49)
T PF14604_consen 3 YDYEAQDPD-ELSFKKGDVITVLEKSDDGWWYGRN 36 (49)
T ss_dssp SCBCSSSTT-B-EB-TTEEEEEEEESSTSEEEEEE
T ss_pred ccCCCCCcC-EeeEcCCCEEEEEEeCCCCEEEEEE
Confidence 456666642 5799999999 5999974
No 24
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=90.33 E-value=1.2 Score=39.53 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=19.1
Q ss_pred ceEEEECCC---hHHHHHHHHhhCC
Q psy10229 113 RPVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~P 134 (231)
+.|||+||+ |+|+.++|.+.+|
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~ 27 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP 27 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC
Confidence 567888999 9999999998875
No 25
>PRK06762 hypothetical protein; Provisional
Probab=90.16 E-value=2.5 Score=34.23 Aligned_cols=98 Identities=17% Similarity=0.117 Sum_probs=50.8
Q ss_pred CceEEEECCC---hHHHHHHHHhhCCCCcccccCCCCCcchhHHHHHHHHhccCceeEEeccCCcc-chHHHHHHHhcCC
Q psy10229 112 ARPVIILGPL---KDRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQEFGEFFTAVVQGDMPEDI-YQKVKEVIQEQSG 187 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~TG~dY~FVe~fe~~i~~~Fd~iE~g~~~g~~-Y~sV~~v~~~~~~ 187 (231)
++.|+|.|++ |+|+.+.|.+.+|..... ++ + +.+...+...++ .-+.+.... ++.++..++.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~-i~--~------D~~r~~l~~~~~--~~~~~~~~~~~~~~~~~~~~--- 67 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLL-VS--Q------DVVRRDMLRVKD--GPGNLSIDLIEQLVRYGLGH--- 67 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEE-ec--H------HHHHHHhccccC--CCCCcCHHHHHHHHHHHHhC---
Confidence 4678899988 999999999876431110 11 0 333322221110 000011111 1444555666
Q ss_pred CCCCCcEEEEEecHH------HHHHHHHcCC-CcEEEEEcCCCHHHH
Q psy10229 188 PSIWGKHCILDVSGN------AIKRLQVASL-YPVAIFIKPKSVESI 227 (231)
Q Consensus 188 ~~~wGk~cILDv~~q------gvk~Lr~~~~-~PivIFI~ppS~e~L 227 (231)
|..+|+|-... -++.|....- .-.+||+.+|-...+
T Consensus 68 ----g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~ 110 (166)
T PRK06762 68 ----CEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETL 110 (166)
T ss_pred ----CCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHH
Confidence 99999985421 2445554333 346788887744433
No 26
>PRK00698 tmk thymidylate kinase; Validated
Probab=89.99 E-value=1.3 Score=36.73 Aligned_cols=22 Identities=18% Similarity=-0.035 Sum_probs=18.6
Q ss_pred CceEEEECCC---hHHHHHHHHhhC
Q psy10229 112 ARPVIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~~ 133 (231)
.+.|+|.||. |+|+.+.|.+..
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999 999999998754
No 27
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=89.85 E-value=0.28 Score=45.03 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=43.2
Q ss_pred eEEEECCC---hHHHHHHHHhhCCCCcccc--------cCCC----------CCcchhHHH--HHHHHhccCceeEEecc
Q psy10229 114 PVIILGPL---KDRINDDLISEFPEQFGSC--------VPPL----------GKMYDRSMK--MEQEFGEFFTAVVQGDM 170 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~~P~~F~~~--------vp~T----------G~dY~FVe~--fe~~i~~~Fd~iE~g~~ 170 (231)
.|+|+||+ |++|..+|.+.++...-.+ .+.+ |+.|||++- .... | -.++|
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~----~---~v~~f 73 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSES----Y---SAADF 73 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhhe----E---cHHHH
Confidence 47899999 9999999998876322111 1221 788888721 1111 1 11222
Q ss_pred CCccchHHHHHHHhcCCCCCCCcEEEEE
Q psy10229 171 PEDIYQKVKEVIQEQSGPSIWGKHCILD 198 (231)
Q Consensus 171 ~g~~Y~sV~~v~~~~~~~~~wGk~cILD 198 (231)
.+...+.|++++++ |+.+||-
T Consensus 74 ~~~a~~~i~~~~~~-------g~~pi~v 94 (287)
T TIGR00174 74 QTLALNAIADITAR-------GKIPLLV 94 (287)
T ss_pred HHHHHHHHHHHHhC-------CCCEEEE
Confidence 22222788888888 9999883
No 28
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=89.32 E-value=0.16 Score=33.65 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCccCCCCccc--------ccccccccc
Q psy10229 24 NSYLPMNPGLNSIFSFPPIL--------EWHGRKKKM 52 (231)
Q Consensus 24 ~~~~p~~~~~gl~F~~gdil--------~Wwqa~~~~ 52 (231)
.+|.+.. +-.|+|+.||++ .||.++...
T Consensus 4 ydf~~~~-~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~ 39 (48)
T PF00018_consen 4 YDFDAED-PDELSFKKGDIIEVLEKSDDGWWKVRNES 39 (48)
T ss_dssp SCBETSS-TTBSEB-TTEEEEEEEESSSSEEEEEETT
T ss_pred eeeCCCC-CCEEeEECCCEEEEEEecCCCEEEEEECC
Confidence 4455554 334699999999 499999864
No 29
>PRK00098 GTPase RsgA; Reviewed
Probab=88.24 E-value=0.79 Score=41.71 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=45.9
Q ss_pred CCceEEEECCC---hHHHHHHHHhhCCCCcccccC-------CC----------------------CCcchhH--HHHHH
Q psy10229 111 YARPVIILGPL---KDRINDDLISEFPEQFGSCVP-------PL----------------------GKMYDRS--MKMEQ 156 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp-------~T----------------------G~dY~FV--e~fe~ 156 (231)
..+.++|+|++ |++|++.|+.......+ .++ || +.+|.++ +++.+
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g-~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 241 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTG-EISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEH 241 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCc-ceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHH
Confidence 35789999999 99999999876543322 232 33 3345555 56666
Q ss_pred HHhc--cCceeEEeccCC-ccc----hHHHHHHHh
Q psy10229 157 EFGE--FFTAVVQGDMPE-DIY----QKVKEVIQE 184 (231)
Q Consensus 157 ~i~~--~Fd~iE~g~~~g-~~Y----~sV~~v~~~ 184 (231)
-+.+ .+ .+...|.+ ..| .+|+++++.
T Consensus 242 ~f~~~~~~--~~~c~f~~c~h~~ep~c~v~~a~~~ 274 (298)
T PRK00098 242 YFPEFRPL--SGDCKFRNCTHLHEPGCAVKAAVEE 274 (298)
T ss_pred HHHHHHHH--hCCCCCCCCcCCCCCCChHHHHHHc
Confidence 5555 44 55555554 233 889999998
No 30
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=82.45 E-value=0.93 Score=29.07 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=15.8
Q ss_pred CCccCCCCccc--------cccccccc
Q psy10229 33 LNSIFSFPPIL--------EWHGRKKK 51 (231)
Q Consensus 33 ~gl~F~~gdil--------~Wwqa~~~ 51 (231)
-.|+|+.||++ .||+++..
T Consensus 14 ~~l~~~~Gd~v~v~~~~~~~w~~~~~~ 40 (54)
T cd00174 14 DELSFKKGDIIEVLEKSDDGWWEGRLL 40 (54)
T ss_pred CCCCCCCCCEEEEEEcCCCCeEEEEEC
Confidence 46799999998 49999865
No 31
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=82.34 E-value=4.4 Score=34.40 Aligned_cols=95 Identities=21% Similarity=0.284 Sum_probs=56.2
Q ss_pred EEEECCC---hHHHHHHHHhhCCCCcccccCCCCCcchhH------HHHHHHHhccCceeEEec-cCCccc-hHHHHHHH
Q psy10229 115 VIILGPL---KDRINDDLISEFPEQFGSCVPPLGKMYDRS------MKMEQEFGEFFTAVVQGD-MPEDIY-QKVKEVIQ 183 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~TG~dY~FV------e~fe~~i~~~Fd~iE~g~-~~g~~Y-~sV~~v~~ 183 (231)
|+|+||+ |+|+.++|.+. +.+||--.+.+|- .++...++ .| ++-|+ ..+..+ ..|.+-++
T Consensus 3 iiilG~pGaGK~T~A~~La~~------~~i~hlstgd~~r~~~~~~t~lg~~~k-~~--i~~g~lv~d~i~~~~v~~rl~ 73 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK------LGLPHLDTGDILRAAIAERTELGEEIK-KY--IDKGELVPDEIVNGLVKERLD 73 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH------hCCcEEcHhHHhHhhhccCChHHHHHH-HH--HHcCCccchHHHHHHHHHHHH
Confidence 6889999 99999999986 3456652222222 22333333 34 55555 444455 66666666
Q ss_pred hcCCCCCCC-cEEEEEecHHHHHHHHHcC--------CCcEEEEEcCCC
Q psy10229 184 EQSGPSIWG-KHCILDVSGNAIKRLQVAS--------LYPVAIFIKPKS 223 (231)
Q Consensus 184 ~~~~~~~wG-k~cILDv~~qgvk~Lr~~~--------~~PivIFI~ppS 223 (231)
+. |. ..+|+|--|.-+.+.+.-. --..++.+..|.
T Consensus 74 ~~-----d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~ 117 (178)
T COG0563 74 EA-----DCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPE 117 (178)
T ss_pred hh-----cccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCH
Confidence 61 21 2688888776666655321 235677777776
No 32
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=81.74 E-value=5.2 Score=31.04 Aligned_cols=91 Identities=12% Similarity=0.228 Sum_probs=47.9
Q ss_pred EEEECCC---hHHHHHHHHhhCCCCcccccCCCCCcchhHHHHHHHHhc-cCce-eEEeccCC----ccchHHHHHHHhc
Q psy10229 115 VIILGPL---KDRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQEFGE-FFTA-VVQGDMPE----DIYQKVKEVIQEQ 185 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~TG~dY~FVe~fe~~i~~-~Fd~-iE~g~~~g----~~Y~sV~~v~~~~ 185 (231)
|+++||+ |+|+.+.|.+..+ ...++. +.+...+.. .... ..+.+... .+++.++..++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~---~~~i~~--------D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 69 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG---AVVISQ--------DEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRN- 69 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST---EEEEEH--------HHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred EEEECCCCCCHHHHHHHHHHHCC---CEEEeH--------HHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHc-
Confidence 7889999 9999999997755 111221 333333332 2200 00111111 122666777777
Q ss_pred CCCCCCCcEEEEEe---cHHHHHHH----HHcCCCcEEEEEcCCC
Q psy10229 186 SGPSIWGKHCILDV---SGNAIKRL----QVASLYPVAIFIKPKS 223 (231)
Q Consensus 186 ~~~~~wGk~cILDv---~~qgvk~L----r~~~~~PivIFI~ppS 223 (231)
|..+|+|- .......+ +..+....+|++.+|.
T Consensus 70 ------g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~ 108 (143)
T PF13671_consen 70 ------GNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPE 108 (143)
T ss_dssp ------T-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHH
T ss_pred ------CCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCH
Confidence 99999983 22222222 2334566777776654
No 33
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=81.58 E-value=5.3 Score=32.16 Aligned_cols=20 Identities=20% Similarity=0.394 Sum_probs=16.7
Q ss_pred EEEECCC---hHHHHHHHHhhCC
Q psy10229 115 VIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~P 134 (231)
|+|+||+ |+|+...|....+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 5788998 9999999988654
No 34
>KOG4792|consensus
Probab=81.44 E-value=0.66 Score=41.90 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=16.0
Q ss_pred CCCccCCCCccc--------cccccccc
Q psy10229 32 GLNSIFSFPPIL--------EWHGRKKK 51 (231)
Q Consensus 32 ~~gl~F~~gdil--------~Wwqa~~~ 51 (231)
+--|.|++|+|| +||-||-.
T Consensus 138 eeDLPFkkGeiL~I~~K~eeqWW~Arns 165 (293)
T KOG4792|consen 138 EEDLPFKKGEILRIRDKPEEQWWNARNS 165 (293)
T ss_pred cccCCcccCcEEEEecCcHHHhhhhhcc
Confidence 345789999999 59999843
No 35
>PLN02840 tRNA dimethylallyltransferase
Probab=80.89 E-value=1.4 Score=42.69 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=20.2
Q ss_pred CceEEEECCC---hHHHHHHHHhhCCC
Q psy10229 112 ARPVIILGPL---KDRINDDLISEFPE 135 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~~P~ 135 (231)
...|+|+||+ |++|...|.+....
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~~ 47 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLNG 47 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCCC
Confidence 4468999999 99999999988753
No 36
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=78.98 E-value=3.9 Score=34.52 Aligned_cols=105 Identities=10% Similarity=0.089 Sum_probs=48.5
Q ss_pred CCCceEEEECCC---hHHHHHHHHhhC-CCCcccccCCCCCcchhH-HHHHHHHhccCceeEEeccC-Cccc-hHHHHHH
Q psy10229 110 DYARPVIILGPL---KDRINDDLISEF-PEQFGSCVPPLGKMYDRS-MKMEQEFGEFFTAVVQGDMP-EDIY-QKVKEVI 182 (231)
Q Consensus 110 ~~~RpVVL~GPs---k~~l~~~Ll~~~-P~~F~~~vp~TG~dY~FV-e~fe~~i~~~Fd~iE~g~~~-g~~Y-~sV~~v~ 182 (231)
..++.++|.||. |+++...++..+ ...+...-+..-+.+|-- +++...-.... -+..... +.+. ..++.++
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~a~ 90 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEA--SELTQKEASRLAEKLIEYAI 90 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCT--HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhh--HHHHHHHHHHHHHHHHHHHH
Confidence 355667778988 999999998876 222211111111112211 22222111011 1111100 1111 5677788
Q ss_pred HhcCCCCCCCcEEEEEec---HHH----HHHHHHcCCCcEEEEEcCCC
Q psy10229 183 QEQSGPSIWGKHCILDVS---GNA----IKRLQVASLYPVAIFIKPKS 223 (231)
Q Consensus 183 ~~~~~~~~wGk~cILDv~---~qg----vk~Lr~~~~~PivIFI~ppS 223 (231)
++ |+++|+|-. ++. ++.++.+++...+++|..|.
T Consensus 91 ~~-------~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~ 131 (199)
T PF06414_consen 91 EN-------RYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPP 131 (199)
T ss_dssp HC-------T--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---H
T ss_pred Hc-------CCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCH
Confidence 88 999999953 333 34667778888888887664
No 37
>KOG1118|consensus
Probab=77.85 E-value=1.4 Score=41.26 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCCCccCCCCccc--------cccccccccC
Q psy10229 22 RKNSYLPMNPGLNSIFSFPPIL--------EWHGRKKKMS 53 (231)
Q Consensus 22 ~~~~~~p~~~~~gl~F~~gdil--------~Wwqa~~~~~ 53 (231)
+..|+.|-+ |-.|.|+.|||+ +||-..+.++
T Consensus 311 alYdFepen-EgEL~fkeGDlI~l~~QIdenWyeG~~~g~ 349 (366)
T KOG1118|consen 311 ALYDFEPEN-EGELDFKEGDLITLTNQIDENWYEGEKHGE 349 (366)
T ss_pred eeeccCCCC-CCccCcccCceeeehhhcCcchhhheecCc
Confidence 556777777 566799999999 6999988765
No 38
>PRK09087 hypothetical protein; Validated
Probab=76.76 E-value=14 Score=32.38 Aligned_cols=116 Identities=11% Similarity=0.123 Sum_probs=65.5
Q ss_pred cceeeeeccCCCCceEEEECCC---hHHHHHHHHhhCCCCcccccCCCCCcchhHHHHHHHHhc--cC-ceeEEec-cCC
Q psy10229 100 SYEPVTQMQIDYARPVIILGPL---KDRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQEFGE--FF-TAVVQGD-MPE 172 (231)
Q Consensus 100 ~Ye~V~~~~~~~~RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~TG~dY~FVe~fe~~i~~--~F-d~iE~g~-~~g 172 (231)
+|..+.+.+....++++|.||+ |++|.+.+.+...-.| ++.. .|..++-..+.+ -. |.++... -..
T Consensus 32 a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~---i~~~----~~~~~~~~~~~~~~l~iDDi~~~~~~~~ 104 (226)
T PRK09087 32 AVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKSDALL---IHPN----EIGSDAANAAAEGPVLIEDIDAGGFDET 104 (226)
T ss_pred HHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhcCCEE---ecHH----HcchHHHHhhhcCeEEEECCCCCCCCHH
Confidence 5665655443334669999999 9999997776532111 1110 122112122221 11 1111110 112
Q ss_pred ccchHHHHHHHhcCCCCCCCcEEEEEec--HH----HHHHHHHcCCCcEEEEEcCCCHHHHhh
Q psy10229 173 DIYQKVKEVIQEQSGPSIWGKHCILDVS--GN----AIKRLQVASLYPVAIFIKPKSVESIIC 229 (231)
Q Consensus 173 ~~Y~sV~~v~~~~~~~~~wGk~cILDv~--~q----gvk~Lr~~~~~PivIFI~ppS~e~L~~ 229 (231)
.++..+..+.+. |+..|+-.+ |. ....|+..--...++-|.||+.+.+++
T Consensus 105 ~lf~l~n~~~~~-------g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~ 160 (226)
T PRK09087 105 GLFHLINSVRQA-------GTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQ 160 (226)
T ss_pred HHHHHHHHHHhC-------CCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHH
Confidence 245777888888 999888664 22 235577665567889999999887764
No 39
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=76.06 E-value=4.3 Score=38.79 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=29.3
Q ss_pred CCCCceEEEECCC---hHHHHHHHHhhCCCCcccccCCCCCcchh
Q psy10229 109 IDYARPVIILGPL---KDRINDDLISEFPEQFGSCVPPLGKMYDR 150 (231)
Q Consensus 109 ~~~~RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~TG~dY~F 150 (231)
+++.+-|+|+|++ |+||.+.|...+.- .+++.-|++|..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~---~~v~E~~R~~~~ 257 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNT---TSAWEYGREYVF 257 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCC---CeeeeccHHHHH
Confidence 5678889999988 99999999986432 246666777644
No 40
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=75.63 E-value=1.6 Score=28.18 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=15.4
Q ss_pred CCccCCCCccc--------cccccccc
Q psy10229 33 LNSIFSFPPIL--------EWHGRKKK 51 (231)
Q Consensus 33 ~gl~F~~gdil--------~Wwqa~~~ 51 (231)
-.|+|+.||++ .||.++..
T Consensus 17 ~~l~~~~Gd~v~v~~~~~~~w~~~~~~ 43 (58)
T smart00326 17 DELSFKKGDIITVLEKSDDGWWKGRLG 43 (58)
T ss_pred CCCCCCCCCEEEEEEcCCCCeEEEEeC
Confidence 45699999998 59998764
No 41
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=75.16 E-value=27 Score=28.90 Aligned_cols=22 Identities=27% Similarity=0.677 Sum_probs=18.4
Q ss_pred CceEEEECCC---hHHHHHHHHhhC
Q psy10229 112 ARPVIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~~ 133 (231)
.+.|+|+||+ |+++.+.|....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 4679999998 999999998753
No 42
>PRK13946 shikimate kinase; Provisional
Probab=75.14 E-value=9.9 Score=31.70 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=19.4
Q ss_pred CCceEEEECCC---hHHHHHHHHhhC
Q psy10229 111 YARPVIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~~ 133 (231)
..+.|+|+|++ |++|.+.|.+..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999988 999999998764
No 43
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=73.97 E-value=7 Score=36.15 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=25.6
Q ss_pred CCCCceEEEECCC---hHHHHHHHHhhCCCCcccccCCCCCc
Q psy10229 109 IDYARPVIILGPL---KDRINDDLISEFPEQFGSCVPPLGKM 147 (231)
Q Consensus 109 ~~~~RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~TG~d 147 (231)
+...+.|+|+|++ |++|.+.|...+.- .+++..|++
T Consensus 159 ~~~~~~~~~~G~~~~gkstl~~~l~~~~~~---~~v~E~~R~ 197 (325)
T TIGR01526 159 PFFVKTVAILGGESTGKSTLVNKLAAVFNT---TSAWEYARE 197 (325)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCC---CEEeehhHH
Confidence 3445679999998 99999999986432 235555554
No 44
>PRK08233 hypothetical protein; Provisional
Probab=73.73 E-value=19 Score=28.96 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=19.1
Q ss_pred ceEEEECCC---hHHHHHHHHhhCCC
Q psy10229 113 RPVIILGPL---KDRINDDLISEFPE 135 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~P~ 135 (231)
..|.|+||+ |+|+.++|....+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~ 29 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKN 29 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 567788998 99999999987653
No 45
>PRK14530 adenylate kinase; Provisional
Probab=73.60 E-value=17 Score=30.91 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=17.5
Q ss_pred eEEEECCC---hHHHHHHHHhhCC
Q psy10229 114 PVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~~P 134 (231)
-|+|+||. |+|+.++|.+.+.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 37889998 9999999988754
No 46
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=72.90 E-value=31 Score=29.67 Aligned_cols=22 Identities=18% Similarity=0.045 Sum_probs=18.3
Q ss_pred CceEEEECCC---hHHHHHHHHhhC
Q psy10229 112 ARPVIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~~ 133 (231)
++.|+|.|++ |+++..+|..+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578889988 999999998874
No 47
>PRK13949 shikimate kinase; Provisional
Probab=72.69 E-value=11 Score=31.30 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=17.0
Q ss_pred ceEEEECCC---hHHHHHHHHhhC
Q psy10229 113 RPVIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~ 133 (231)
+.|+|+||. |+++...|.+..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358899988 999999888753
No 48
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=71.92 E-value=1.3 Score=29.96 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=12.9
Q ss_pred CccCCCCccc---------ccccccc
Q psy10229 34 NSIFSFPPIL---------EWHGRKK 50 (231)
Q Consensus 34 gl~F~~gdil---------~Wwqa~~ 50 (231)
.|+|++||++ +||.++.
T Consensus 15 ~Ls~~~Gd~i~v~~~~~~~~ww~~~~ 40 (55)
T PF07653_consen 15 ELSFKKGDVIEVLGEKDDDGWWLGEN 40 (55)
T ss_dssp B-EB-TTEEEEEEEEECSTSEEEEEE
T ss_pred ceEEecCCEEEEEEeecCCCEEEEEE
Confidence 4799999998 5999976
No 49
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=71.31 E-value=17 Score=31.62 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=17.2
Q ss_pred eEEEECCC---hHHHHHHHHhhCC
Q psy10229 114 PVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~~P 134 (231)
.|||+|+. |+|+.+.|.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 47899988 9999999887643
No 50
>PRK14532 adenylate kinase; Provisional
Probab=70.81 E-value=16 Score=30.03 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=17.3
Q ss_pred EEEECCC---hHHHHHHHHhhCC
Q psy10229 115 VIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~P 134 (231)
|+|+||. |+|+.++|.+.+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 7889988 9999999988764
No 51
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=70.66 E-value=8.1 Score=31.41 Aligned_cols=21 Identities=14% Similarity=0.441 Sum_probs=17.5
Q ss_pred ceEEEECCC---hHHHHHHHHhhC
Q psy10229 113 RPVIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~ 133 (231)
..|+|+||+ |+|+.++|.+.+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999 999999998764
No 52
>KOG2199|consensus
Probab=68.79 E-value=1.8 Score=41.77 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=14.5
Q ss_pred CccCCCCccc--------ccccccc
Q psy10229 34 NSIFSFPPIL--------EWHGRKK 50 (231)
Q Consensus 34 gl~F~~gdil--------~Wwqa~~ 50 (231)
.|+|+.|||+ +||.++-
T Consensus 231 ELsFkaGdIItVLd~s~~~WWKG~~ 255 (462)
T KOG2199|consen 231 ELSFKAGDIITVLDDSDPNWWKGEN 255 (462)
T ss_pred ccceecCcEEEEcccCCcchhcccc
Confidence 5699999999 7998764
No 53
>PRK04040 adenylate kinase; Provisional
Probab=67.53 E-value=14 Score=31.44 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=18.7
Q ss_pred ceEEEECCC---hHHHHHHHHhhCC
Q psy10229 113 RPVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~P 134 (231)
+-|+|+|++ |+|+.++|.+..|
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 457888888 9999999999876
No 54
>PRK05541 adenylylsulfate kinase; Provisional
Probab=66.25 E-value=19 Score=29.42 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=19.4
Q ss_pred CCceEEEECCC---hHHHHHHHHhhCC
Q psy10229 111 YARPVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~~P 134 (231)
.+..|+|.||+ |+++.+.|.....
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45678999999 9999998887654
No 55
>PRK08118 topology modulation protein; Reviewed
Probab=65.14 E-value=27 Score=28.87 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=16.2
Q ss_pred EEEECCC---hHHHHHHHHhhC
Q psy10229 115 VIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~ 133 (231)
|+|+||+ |+|+.++|.+..
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788998 999999998763
No 56
>PLN02165 adenylate isopentenyltransferase
Probab=63.97 E-value=17 Score=34.35 Aligned_cols=26 Identities=35% Similarity=0.577 Sum_probs=21.1
Q ss_pred CCCCceEEEECCC---hHHHHHHHHhhCC
Q psy10229 109 IDYARPVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 109 ~~~~RpVVL~GPs---k~~l~~~Ll~~~P 134 (231)
......|+|+||. |++|...|....+
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 4455679999999 9999999988754
No 57
>PRK13948 shikimate kinase; Provisional
Probab=63.38 E-value=48 Score=28.12 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=19.1
Q ss_pred CCceEEEECCC---hHHHHHHHHhhC
Q psy10229 111 YARPVIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~~ 133 (231)
.++.|+|+|+. |+++-+.|.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45889999988 999999887754
No 58
>PRK13947 shikimate kinase; Provisional
Probab=63.30 E-value=77 Score=25.39 Aligned_cols=21 Identities=10% Similarity=0.445 Sum_probs=17.5
Q ss_pred eEEEECCC---hHHHHHHHHhhCC
Q psy10229 114 PVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~~P 134 (231)
.|+|+||+ |+++.+.|.+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 48999988 9999999988644
No 59
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=62.58 E-value=27 Score=32.62 Aligned_cols=50 Identities=28% Similarity=0.457 Sum_probs=34.6
Q ss_pred cCCccchHHHHHHHhcCCCCCCCcEEEEEecHHHHHHHHHcCCCcEEEEEcCCCHHHHhhc
Q psy10229 170 MPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIICR 230 (231)
Q Consensus 170 ~~g~~Y~sV~~v~~~~~~~~~wGk~cILDv~~qgvk~Lr~~~~~PivIFI~ppS~e~L~~~ 230 (231)
+.-..|..+-+++.+. |..++||.+.+++...-.+. |. +-=|+.++|+++
T Consensus 143 ~~~d~y~~li~~~~~~------g~~vilD~Sg~~L~~~L~~~--P~---lIKPN~~EL~~~ 192 (310)
T COG1105 143 VPPDAYAELIRILRQQ------GAKVILDTSGEALLAALEAK--PW---LIKPNREELEAL 192 (310)
T ss_pred CCHHHHHHHHHHHHhc------CCeEEEECChHHHHHHHccC--Cc---EEecCHHHHHHH
Confidence 3335676655555553 99999999999997766664 54 334788888764
No 60
>PRK07261 topology modulation protein; Provisional
Probab=61.65 E-value=34 Score=28.33 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=15.7
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+||+ |+|+.+.|...
T Consensus 3 i~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 6788999 99999999765
No 61
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=60.30 E-value=57 Score=27.96 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=18.2
Q ss_pred CceEEEECCC---hHHHHHHHHhhC
Q psy10229 112 ARPVIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~~ 133 (231)
.++|||+|+- |+||-+.|.+..
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHc
Confidence 4679999988 999999887653
No 62
>PRK13975 thymidylate kinase; Provisional
Probab=58.95 E-value=88 Score=25.65 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=19.4
Q ss_pred ceEEEECCC---hHHHHHHHHhhCCC
Q psy10229 113 RPVIILGPL---KDRINDDLISEFPE 135 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~P~ 135 (231)
+-|+|.||. |+|+.+.|.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 568999998 99999999887654
No 63
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=57.56 E-value=89 Score=30.15 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=32.1
Q ss_pred cchHHHHHHHhcCCCCCCCcEEEE--EecHHHHHHH----HHcCCCcEEEEEcCCCHHHHhh
Q psy10229 174 IYQKVKEVIQEQSGPSIWGKHCIL--DVSGNAIKRL----QVASLYPVAIFIKPKSVESIIC 229 (231)
Q Consensus 174 ~Y~sV~~v~~~~~~~~~wGk~cIL--Dv~~qgvk~L----r~~~~~PivIFI~ppS~e~L~~ 229 (231)
++..+.+..+. |+.+|+ |-+|..+..+ +..--.-.+|-|.||+.+...+
T Consensus 216 lf~~~n~l~~~-------~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 216 LFHTFNELHDS-------GKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHHHHHHHHHc-------CCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 34556667777 888888 4556655444 3322245688999999987654
No 64
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=57.43 E-value=66 Score=25.89 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=16.0
Q ss_pred EEEECCC---hHHHHHHHHhhC
Q psy10229 115 VIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~ 133 (231)
|+|.|++ |+++.+.|....
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6788988 999999888764
No 65
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=57.21 E-value=66 Score=26.08 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=17.1
Q ss_pred EEEECCC---hHHHHHHHHhhCC
Q psy10229 115 VIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~P 134 (231)
|+|+||+ |+|+.++|.+.+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 6889988 9999999988753
No 66
>PRK12288 GTPase RsgA; Reviewed
Probab=56.84 E-value=16 Score=34.25 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.4
Q ss_pred CceEEEECCC---hHHHHHHHHhh
Q psy10229 112 ARPVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~ 132 (231)
.+.++|+|+| |++|++.|+..
T Consensus 205 ~ki~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 205 GRISIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred hCCEEEECCCCCCHHHHHHHhccc
Confidence 4578999999 99999999864
No 67
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=55.83 E-value=96 Score=26.92 Aligned_cols=43 Identities=26% Similarity=0.457 Sum_probs=34.6
Q ss_pred hHHHHHHHhcCCCCCCCcEEEEEecHH----HHHHHHHcCCCcEEEEEcCCCHHHH
Q psy10229 176 QKVKEVIQEQSGPSIWGKHCILDVSGN----AIKRLQVASLYPVAIFIKPKSVESI 227 (231)
Q Consensus 176 ~sV~~v~~~~~~~~~wGk~cILDv~~q----gvk~Lr~~~~~PivIFI~ppS~e~L 227 (231)
++|++++.. +|..|.-+.-. .+++++.. ..+++||.|-+.+.|
T Consensus 121 ~~ve~vl~~-------~kpliatlHrrsr~P~v~~ik~~--~~v~v~lt~~NR~~i 167 (179)
T COG1618 121 EAVEEVLKS-------GKPLIATLHRRSRHPLVQRIKKL--GGVYVFLTPENRNRI 167 (179)
T ss_pred HHHHHHhcC-------CCcEEEEEecccCChHHHHhhhc--CCEEEEEccchhhHH
Confidence 899999999 99988888877 67777654 578888999887644
No 68
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=55.74 E-value=13 Score=31.38 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=19.1
Q ss_pred CceEEEECCC---hHHHHHHHHhh
Q psy10229 112 ARPVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~ 132 (231)
.+.+||+||| |++|++.|+..
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999 99999999875
No 69
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=55.68 E-value=54 Score=31.41 Aligned_cols=48 Identities=19% Similarity=0.381 Sum_probs=30.7
Q ss_pred chHHHHHHHhcCCCCCCCcEEEEEec--HHHHH----HHHHcCCCcEEEEEcCCCHHHHhh
Q psy10229 175 YQKVKEVIQEQSGPSIWGKHCILDVS--GNAIK----RLQVASLYPVAIFIKPKSVESIIC 229 (231)
Q Consensus 175 Y~sV~~v~~~~~~~~~wGk~cILDv~--~qgvk----~Lr~~~~~PivIFI~ppS~e~L~~ 229 (231)
+..+....++ |+.+|+-.+ |..+. +|+..--.-.+|-|.||+.+++..
T Consensus 234 ~~~~n~l~~~-------~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 234 FHTFNALHEA-------GKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred HHHHHHHHHC-------CCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 3556666777 887777543 43433 344443345789999999987654
No 70
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=55.37 E-value=23 Score=28.68 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=17.6
Q ss_pred eEEEECCC---hHHHHHHHHhhCC
Q psy10229 114 PVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~~P 134 (231)
.|+|.||. |+|+.++|.+..+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899998 9999999987653
No 71
>PLN02748 tRNA dimethylallyltransferase
Probab=54.20 E-value=38 Score=33.36 Aligned_cols=25 Identities=40% Similarity=0.769 Sum_probs=20.6
Q ss_pred CCCceEEEECCC---hHHHHHHHHhhCC
Q psy10229 110 DYARPVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 110 ~~~RpVVL~GPs---k~~l~~~Ll~~~P 134 (231)
...+.|+|+||+ |++|...|...++
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~ 47 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFP 47 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 455678999999 9999999988765
No 72
>KOG0162|consensus
Probab=53.30 E-value=7.9 Score=40.42 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.7
Q ss_pred CccCCCCcccc--------cccccc
Q psy10229 34 NSIFSFPPILE--------WHGRKK 50 (231)
Q Consensus 34 gl~F~~gdil~--------Wwqa~~ 50 (231)
.|+|++|||++ ||+++.
T Consensus 1067 Els~~~~diIei~~edpSGWw~gk~ 1091 (1106)
T KOG0162|consen 1067 ELSFKKGDIIEIMREDPSGWWLGKL 1091 (1106)
T ss_pred cccccCCCEEEEeccCCCcchhhcc
Confidence 56999999993 999984
No 73
>KOG1663|consensus
Probab=52.90 E-value=81 Score=28.54 Aligned_cols=75 Identities=12% Similarity=0.097 Sum_probs=55.6
Q ss_pred chhHHHHHHHHhc-cCceeEEeccCCccchHHHHHHHhcCCCCCCCcEEEEEecHHHHHH----HHHcCCCcEEEEEcCC
Q psy10229 148 YDRSMKMEQEFGE-FFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKR----LQVASLYPVAIFIKPK 222 (231)
Q Consensus 148 Y~FVe~fe~~i~~-~Fd~iE~g~~~g~~Y~sV~~v~~~~~~~~~wGk~cILDv~~qgvk~----Lr~~~~~PivIFI~pp 222 (231)
-+|++.+-+.++. .- ||.|.|-| |+++.-..+- +..|++.=+||+.++.+. .+.++..=.+=||.-|
T Consensus 62 g~fl~~li~~~~ak~~--lelGvfTG--ySaL~~Alal----p~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~ 133 (237)
T KOG1663|consen 62 GQFLQMLIRLLNAKRT--LELGVFTG--YSALAVALAL----PEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP 133 (237)
T ss_pred HHHHHHHHHHhCCceE--EEEecccC--HHHHHHHHhc----CCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence 3577777777777 77 99999987 6665544433 335999999999998765 4456777777888888
Q ss_pred CHHHHhhc
Q psy10229 223 SVESIICR 230 (231)
Q Consensus 223 S~e~L~~~ 230 (231)
+.+.|.++
T Consensus 134 a~esLd~l 141 (237)
T KOG1663|consen 134 ALESLDEL 141 (237)
T ss_pred hhhhHHHH
Confidence 88777664
No 74
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=52.53 E-value=14 Score=27.83 Aligned_cols=19 Identities=32% Similarity=0.630 Sum_probs=16.9
Q ss_pred EEEECCC---hHHHHHHHHhhC
Q psy10229 115 VIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~ 133 (231)
|+|.||+ |+|+.++|.+.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6889999 999999999864
No 75
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=50.94 E-value=1e+02 Score=28.93 Aligned_cols=48 Identities=15% Similarity=0.335 Sum_probs=30.6
Q ss_pred chHHHHHHHhcCCCCCCCcEEEEEe--cHHHHHH----HHHcCCCcEEEEEcCCCHHHHhh
Q psy10229 175 YQKVKEVIQEQSGPSIWGKHCILDV--SGNAIKR----LQVASLYPVAIFIKPKSVESIIC 229 (231)
Q Consensus 175 Y~sV~~v~~~~~~~~~wGk~cILDv--~~qgvk~----Lr~~~~~PivIFI~ppS~e~L~~ 229 (231)
+..+....+. |+..|+-. .|+.+.. |+..--.-.+|.|.||+.++..+
T Consensus 222 ~~~~n~~~~~-------~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 222 FHTFNALHEN-------GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred HHHHHHHHHC-------CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 3566666677 88777754 3555543 33332234689999999987654
No 76
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=50.87 E-value=8 Score=33.08 Aligned_cols=60 Identities=23% Similarity=0.347 Sum_probs=39.2
Q ss_pred eeeeeccCCCCceEEEECCC--hHHHHHHHHhhCCCCcccccCCC------------CCcchhHHHHHHHHhc-cC
Q psy10229 102 EPVTQMQIDYARPVIILGPL--KDRINDDLISEFPEQFGSCVPPL------------GKMYDRSMKMEQEFGE-FF 162 (231)
Q Consensus 102 e~V~~~~~~~~RpVVL~GPs--k~~l~~~Ll~~~P~~F~~~vp~T------------G~dY~FVe~fe~~i~~-~F 162 (231)
|.|..|--..+||+.|+||. ...+.+++++- -++|..++-.| |.+|+-+.+..+-+.+ .+
T Consensus 26 ~v~ammIkkAkrPLlivGp~~~dee~~E~~vKi-~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w 100 (170)
T COG1880 26 EVVAMMIKKAKRPLLIVGPLALDEELLELAVKI-IEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNW 100 (170)
T ss_pred HHHHHHHHhcCCceEEecccccCHHHHHHHHHH-HHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCC
Confidence 44445555678999999999 36677666553 35676666666 5556666666666666 44
No 77
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=50.11 E-value=1.6e+02 Score=27.77 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=63.6
Q ss_pred EECCC---hHHHHHHHHhhCCCC---cccccCCC-CCcchhH-HHHHHHHhccCceeEEeccCCccc----hHHHHHHHh
Q psy10229 117 ILGPL---KDRINDDLISEFPEQ---FGSCVPPL-GKMYDRS-MKMEQEFGEFFTAVVQGDMPEDIY----QKVKEVIQE 184 (231)
Q Consensus 117 L~GPs---k~~l~~~Ll~~~P~~---F~~~vp~T-G~dY~FV-e~fe~~i~~~Fd~iE~g~~~g~~Y----~sV~~v~~~ 184 (231)
++|.. +..|.+-+-...|+. +.+|+|++ |.|+.-| .+++....-.+-.+...-|.|+.+ .+++.+++.
T Consensus 67 VfGg~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~~vi~v~t~gf~g~~~~G~~~a~~~l~~~ 146 (410)
T cd01968 67 IFGGEKKLYKAILEIIERYHPKAVFVYSTCVVALIGDDIDAVCKTASEKFGIPVIPVHSPGFVGNKNLGNKLACEALLDH 146 (410)
T ss_pred eeccHHHHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhhCCCEEEEECCCcccChhHHHHHHHHHHHHH
Confidence 46876 455555444446773 46677777 9998888 777766532441133445666543 345555544
Q ss_pred cCC---CC--CCCcEEEE-----EecHHHHHH-HHHcCCCcEEEEEcCCCHHHHhhc
Q psy10229 185 QSG---PS--IWGKHCIL-----DVSGNAIKR-LQVASLYPVAIFIKPKSVESIICR 230 (231)
Q Consensus 185 ~~~---~~--~wGk~cIL-----Dv~~qgvk~-Lr~~~~~PivIFI~ppS~e~L~~~ 230 (231)
.-. +. .-+++-|+ .-|..-+++ |+..++.+..+|-.-.|+++++.+
T Consensus 147 l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~ 203 (410)
T cd01968 147 VIGTEEPEPLTPYDINLIGEFNVAGELWGVKPLLEKLGIRVLASITGDSRVDEIRRA 203 (410)
T ss_pred hcCCCCcccCCCCcEEEECCCCCcccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhh
Confidence 311 11 13555555 223334444 445677777666555688888764
No 78
>KOG4226|consensus
Probab=49.32 E-value=6.5 Score=36.59 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=15.5
Q ss_pred CccCCCCccc----------cccccccc
Q psy10229 34 NSIFSFPPIL----------EWHGRKKK 51 (231)
Q Consensus 34 gl~F~~gdil----------~Wwqa~~~ 51 (231)
.|+|.+||.| +||.||..
T Consensus 207 ELsFeKGerleivd~Pe~DPdWwkarn~ 234 (379)
T KOG4226|consen 207 ELSFEKGERLEIVDKPENDPDWWKARNA 234 (379)
T ss_pred hcccccCceeEeccCCCCCchHHhhccc
Confidence 6799999999 49999854
No 79
>PRK06217 hypothetical protein; Validated
Probab=48.87 E-value=1.5e+02 Score=24.37 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=16.7
Q ss_pred EEEECCC---hHHHHHHHHhhC
Q psy10229 115 VIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~ 133 (231)
|+|+|++ |+|+.++|.+..
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7889988 999999998864
No 80
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=47.89 E-value=95 Score=25.41 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=18.9
Q ss_pred CceEEEECCC---hHHHHHHHHhhCC
Q psy10229 112 ARPVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~~P 134 (231)
...|+|.|+. |+|+.++|.+...
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3568999998 9999999987654
No 81
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=47.77 E-value=1.5e+02 Score=28.46 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=62.4
Q ss_pred EEECCC---hHHHHHHHHhhCC-C---CcccccCCC-CCcchhH-HHHHHHHhc--cCceeEEeccCCcc----c-hHHH
Q psy10229 116 IILGPL---KDRINDDLISEFP-E---QFGSCVPPL-GKMYDRS-MKMEQEFGE--FFTAVVQGDMPEDI----Y-QKVK 179 (231)
Q Consensus 116 VL~GPs---k~~l~~~Ll~~~P-~---~F~~~vp~T-G~dY~FV-e~fe~~i~~--~Fd~iE~g~~~g~~----Y-~sV~ 179 (231)
+++|-. +..|.+-.-...| + ....|++.+ |.|+.-+ .+++..+.- -+ +...-|.|.. | .+++
T Consensus 97 ~V~Gg~~~L~~aI~~~~~~~~p~~~I~V~~tC~~~liGdDi~~v~~~~~~~~~~pvi~--v~t~gf~g~~~~~G~~~a~~ 174 (443)
T TIGR01862 97 IVFGGEKKLKKLIHEAFTEFPLIKAISVYATCPTGLIGDDIEAVAKEVSKEIGKDVVA--VNCPGFAGVSQSKGHHIANI 174 (443)
T ss_pred eeeCcHHHHHHHHHHHHHhCCccceEEEECCChHHHhccCHHHHHHHHHHhcCCCEEE--EecCCccCCccchHHHHHHH
Confidence 346665 4444444444446 6 456667766 9888887 777766532 23 4445566632 2 4444
Q ss_pred HHHHhcCC---C--CCCCcEEEE-----EecHHHHHHH-HHcCCCcEEEEEcCCCHHHHhhc
Q psy10229 180 EVIQEQSG---P--SIWGKHCIL-----DVSGNAIKRL-QVASLYPVAIFIKPKSVESIICR 230 (231)
Q Consensus 180 ~v~~~~~~---~--~~wGk~cIL-----Dv~~qgvk~L-r~~~~~PivIFI~ppS~e~L~~~ 230 (231)
.++++.-. + ..-+++-|| .-|..-+++| ...++.+..+|-.-.++++|+.+
T Consensus 175 al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~ 236 (443)
T TIGR01862 175 AVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLM 236 (443)
T ss_pred HHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhc
Confidence 44443211 1 123555555 2344444444 45678887777655678888865
No 82
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=47.27 E-value=48 Score=30.70 Aligned_cols=20 Identities=30% Similarity=0.384 Sum_probs=17.6
Q ss_pred ceEEEECCC---hHHHHHHHHhh
Q psy10229 113 RPVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~ 132 (231)
+.|+|+||. |+.|.-+|.+.
T Consensus 5 ~ii~I~GpTasGKS~LAl~LA~~ 27 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFHFPKG 27 (300)
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 478999999 99999999876
No 83
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=47.14 E-value=1.2e+02 Score=23.77 Aligned_cols=18 Identities=17% Similarity=0.479 Sum_probs=15.9
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+||+ |+|+.+.|.+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 6889999 99999999876
No 84
>KOG1029|consensus
Probab=46.99 E-value=11 Score=39.53 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=15.3
Q ss_pred CCccCCCCccc--------cccccccc
Q psy10229 33 LNSIFSFPPIL--------EWHGRKKK 51 (231)
Q Consensus 33 ~gl~F~~gdil--------~Wwqa~~~ 51 (231)
-.|+|++|||+ +||+.-+.
T Consensus 1068 DELsF~kgdiI~VlnkdepeWW~Ge~n 1094 (1118)
T KOG1029|consen 1068 DELSFKKGDIINVLNKDEPEWWSGERN 1094 (1118)
T ss_pred ccccccCCCEEEecCCCChhhhccccc
Confidence 35699999999 59997654
No 85
>PRK00889 adenylylsulfate kinase; Provisional
Probab=46.98 E-value=1.2e+02 Score=24.54 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=17.9
Q ss_pred CceEEEECCC---hHHHHHHHHhhC
Q psy10229 112 ARPVIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~~ 133 (231)
...|+|.|++ |+++.+.|....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999988 999999887754
No 86
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=46.44 E-value=26 Score=29.68 Aligned_cols=19 Identities=21% Similarity=0.583 Sum_probs=16.2
Q ss_pred EEEECCC---hHHHHHHHHhhC
Q psy10229 115 VIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~ 133 (231)
|+|+||. |+|+..+|.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7889988 999999998764
No 87
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=45.33 E-value=17 Score=28.76 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=22.5
Q ss_pred ceEEEECCC--hHHHHH-HHHhhCCCCcccc
Q psy10229 113 RPVIILGPL--KDRIND-DLISEFPEQFGSC 140 (231)
Q Consensus 113 RpVVL~GPs--k~~l~~-~Ll~~~P~~F~~~ 140 (231)
|||+|+|.. .+|+.. .|+..+|+.....
T Consensus 1 ~pvfI~G~~RSGTTlL~~~Ll~~~~~~~~~~ 31 (215)
T PF13469_consen 1 RPVFIVGMPRSGTTLLSRRLLSQHPQIWGVH 31 (215)
T ss_dssp SCEEEECSTTSSHHHHH-HHHCTSTTEECGC
T ss_pred CeEEEECCCCCcHHHHHHHHHccCCCeeecC
Confidence 689999998 788887 9998899855443
No 88
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=44.89 E-value=23 Score=26.28 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=16.7
Q ss_pred EEEECCC---hHHHHHHHHhhCC
Q psy10229 115 VIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~P 134 (231)
|+++|+. |++|+++|+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 6788999 9999999998643
No 89
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=44.61 E-value=2e+02 Score=27.35 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=54.7
Q ss_pred EECCC---hHHHHHHHHhhCCCC---cccccCCC-CCcchhH-HHHHHH----HhccCceeEEeccCCccc----hHHHH
Q psy10229 117 ILGPL---KDRINDDLISEFPEQ---FGSCVPPL-GKMYDRS-MKMEQE----FGEFFTAVVQGDMPEDIY----QKVKE 180 (231)
Q Consensus 117 L~GPs---k~~l~~~Ll~~~P~~---F~~~vp~T-G~dY~FV-e~fe~~----i~~~Fd~iE~g~~~g~~Y----~sV~~ 180 (231)
++|-. +..|.+-+-...|+. +.+|+|++ |.|..=+ .++++. ..-..-.+...-|.|+.+ .++++
T Consensus 62 V~Gg~~~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a~~a 141 (428)
T cd01965 62 VFGGEDNLIEALKNLLSRYKPDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNAVKA 141 (428)
T ss_pred eECcHHHHHHHHHHHHHhcCCCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHHHHH
Confidence 45765 444444333345663 46667777 8887777 666653 222220133445667665 55555
Q ss_pred HHHhcCCC---CCCCcEEEE---Ee---cHHHHHHHH-HcCCCcEEEEE
Q psy10229 181 VIQEQSGP---SIWGKHCIL---DV---SGNAIKRLQ-VASLYPVAIFI 219 (231)
Q Consensus 181 v~~~~~~~---~~wGk~cIL---Dv---~~qgvk~Lr-~~~~~PivIFI 219 (231)
++++.-.+ ...+++.|| .. |...+++|- ..++.+..+|-
T Consensus 142 l~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~~ 190 (428)
T cd01965 142 IIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIILPD 190 (428)
T ss_pred HHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEecC
Confidence 55543222 234677777 11 345555544 45677776663
No 90
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=44.13 E-value=25 Score=31.66 Aligned_cols=26 Identities=27% Similarity=0.669 Sum_probs=21.3
Q ss_pred CCCCceEEEECCC---hHHHHHHHHhhCC
Q psy10229 109 IDYARPVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 109 ~~~~RpVVL~GPs---k~~l~~~Ll~~~P 134 (231)
....+||+|+||+ |+.+++.++++.+
T Consensus 30 ~~~~~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred HHcCCcEEEECCCCCchhHHHHhhhccCC
Confidence 4578999999999 9998888776544
No 91
>KOG3875|consensus
Probab=43.75 E-value=6.8 Score=36.88 Aligned_cols=39 Identities=10% Similarity=0.006 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCCCccCCCCccc-------------cccccccccCCCCccceeeecc
Q psy10229 22 RKNSYLPMNPGLNSIFSFPPIL-------------EWHGRKKKMSRNNTAKITFRGK 65 (231)
Q Consensus 22 ~~~~~~p~~~~~gl~F~~gdil-------------~Wwqa~~~~~~~~~~~~~l~~~ 65 (231)
+..++.+-+| ..|+|++||+| +||+-+... ....|++..
T Consensus 273 A~YdF~a~np-~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~d----g~~tG~iP~ 324 (362)
T KOG3875|consen 273 ALYDFVARNP-VELSLKKGDMLAIASKEDQQGVRCEGWLLATRD----GGTTGLIPI 324 (362)
T ss_pred HHhhhhcCCH-HHhhhhcCchhhcccccccCCCCCcceeeeecc----CCeeeeeeh
Confidence 3445555565 67799999999 499987662 134677543
No 92
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=43.11 E-value=77 Score=23.66 Aligned_cols=46 Identities=11% Similarity=0.206 Sum_probs=34.5
Q ss_pred hHHHHHHHhcCCCCCCC-cEEEEEecHHHHHHHHHcCCCcEEEEEcCCCHHHHhhc
Q psy10229 176 QKVKEVIQEQSGPSIWG-KHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIICR 230 (231)
Q Consensus 176 ~sV~~v~~~~~~~~~wG-k~cILDv~~qgvk~Lr~~~~~PivIFI~ppS~e~L~~~ 230 (231)
.-++.+.+. | +++++|.+++.++.++..++. +|+-.+-+.+.|++.
T Consensus 12 ~i~~~L~~~-------~~~vvvid~d~~~~~~~~~~~~~--~i~gd~~~~~~l~~a 58 (116)
T PF02254_consen 12 EIAEQLKEG-------GIDVVVIDRDPERVEELREEGVE--VIYGDATDPEVLERA 58 (116)
T ss_dssp HHHHHHHHT-------TSEEEEEESSHHHHHHHHHTTSE--EEES-TTSHHHHHHT
T ss_pred HHHHHHHhC-------CCEEEEEECCcHHHHHHHhcccc--cccccchhhhHHhhc
Confidence 344555555 7 799999999999999988733 677788888888753
No 93
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=43.08 E-value=25 Score=26.61 Aligned_cols=106 Identities=12% Similarity=0.192 Sum_probs=49.7
Q ss_pred CCceEEEECCC---hHHHHHHHHhhCC---------CCcccccCCCCCcchhHHHHHHHHhccCceeEEeccCCccchHH
Q psy10229 111 YARPVIILGPL---KDRINDDLISEFP---------EQFGSCVPPLGKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKV 178 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~~P---------~~F~~~vp~TG~dY~FVe~fe~~i~~~Fd~iE~g~~~g~~Y~sV 178 (231)
..+.++|.||+ |+++.+++...++ +......+.......|.+++-+.+.... .. +.....+++.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~--~~-~~~~~~l~~~~ 79 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPL--KS-RQTSDELRSLL 79 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SS--SS-TS-HHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccc--cc-cCCHHHHHHHH
Confidence 35678999999 9999999988753 2221111111211122233333333211 00 11112234778
Q ss_pred HHHHHhcCCCCCCCcE--EEEE----e-cHHHHHHHHHc--CCCcEEEEEcCCCHHH
Q psy10229 179 KEVIQEQSGPSIWGKH--CILD----V-SGNAIKRLQVA--SLYPVAIFIKPKSVES 226 (231)
Q Consensus 179 ~~v~~~~~~~~~wGk~--cILD----v-~~qgvk~Lr~~--~~~PivIFI~ppS~e~ 226 (231)
.+.+++ .+. .|+| + +.+.+..|+.. ....-+|++--|++++
T Consensus 80 ~~~l~~-------~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~~l~~ 129 (131)
T PF13401_consen 80 IDALDR-------RRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTPELEK 129 (131)
T ss_dssp HHHHHH-------CTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESSTTTT
T ss_pred HHHHHh-------cCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEEChhhHh
Confidence 888877 443 4444 2 33344555443 4455667776666654
No 94
>COG4639 Predicted kinase [General function prediction only]
Probab=42.79 E-value=1.2e+02 Score=26.04 Aligned_cols=94 Identities=14% Similarity=0.149 Sum_probs=52.4
Q ss_pred CceEEEECCC---hHHHHHHHHhhCCCCcccccCCCCCcchhHHHHHHHHhc-cCceeEEe---ccCCccchHHHHHHHh
Q psy10229 112 ARPVIILGPL---KDRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQEFGE-FFTAVVQG---DMPEDIYQKVKEVIQE 184 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~TG~dY~FVe~fe~~i~~-~Fd~iE~g---~~~g~~Y~sV~~v~~~ 184 (231)
++.|||.|++ |+|........ .+..++ +.+...++. ..+..-.+ ..-..+|...++-+++
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~~---~~~lsl----------d~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~ 68 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFLQ---NYVLSL----------DDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRR 68 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCCC---cceecH----------HHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHc
Confidence 4678999999 88877765432 222221 344444432 22001111 1223456778888888
Q ss_pred cCCCCCCCcEEEEEecH---HHHHHHHH----cCCCcEEEEEcCCCHH
Q psy10229 185 QSGPSIWGKHCILDVSG---NAIKRLQV----ASLYPVAIFIKPKSVE 225 (231)
Q Consensus 185 ~~~~~~wGk~cILDv~~---qgvk~Lr~----~~~~PivIFI~ppS~e 225 (231)
|++.|+|-.- .-.++|.. -++.+++|.+.-|-.+
T Consensus 69 -------Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~ 109 (168)
T COG4639 69 -------GKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLEL 109 (168)
T ss_pred -------CCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHH
Confidence 9999999643 54555543 2455666666655433
No 95
>KOG2070|consensus
Probab=41.01 E-value=13 Score=37.08 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=15.5
Q ss_pred CccCCCCccc--------ccccccccc
Q psy10229 34 NSIFSFPPIL--------EWHGRKKKM 52 (231)
Q Consensus 34 gl~F~~gdil--------~Wwqa~~~~ 52 (231)
.|+|.+|||+ -||-.-+.+
T Consensus 33 ELsf~KgDvItVTq~eeGGWWEGTlng 59 (661)
T KOG2070|consen 33 ELSFSKGDVITVTQVEEGGWWEGTLNG 59 (661)
T ss_pred eeccccCCEEEEEEeccCcceeccccC
Confidence 4599999999 399987753
No 96
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=40.79 E-value=1.6e+02 Score=28.72 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=63.4
Q ss_pred EEECCC---hHHHHHHHHhhCCCC---cccccCCC-CCcchhH-HHHHHHHhccCceeEEeccCCccc----hHHHHHHH
Q psy10229 116 IILGPL---KDRINDDLISEFPEQ---FGSCVPPL-GKMYDRS-MKMEQEFGEFFTAVVQGDMPEDIY----QKVKEVIQ 183 (231)
Q Consensus 116 VL~GPs---k~~l~~~Ll~~~P~~---F~~~vp~T-G~dY~FV-e~fe~~i~~~Fd~iE~g~~~g~~Y----~sV~~v~~ 183 (231)
+++|-. ...|.+-+....|+. +..|++++ |.|+.-| .+++..+.-.+-.+...-|.|+.+ .+++.+++
T Consensus 99 vVfGg~~kL~~~I~ei~~~~~P~~I~V~tTC~~~lIGdDi~~v~~~~~~~~~~pvi~v~t~Gf~g~~~~G~~~a~~al~~ 178 (475)
T PRK14478 99 VVFGGEKKLFKAIDEIIEKYAPPAVFVYQTCVVALIGDDIDAVCKRAAEKFGIPVIPVNSPGFVGNKNLGNKLAGEALLD 178 (475)
T ss_pred eeeCCHHHHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHHHHHHHHhhCCCEEEEECCCcccchhhhHHHHHHHHHH
Confidence 356844 455555444456774 45666666 9998888 777766533331144455666543 44555555
Q ss_pred hcCC---C--CCCCcEEEEE-----ecHHHHHHH-HHcCCCcEEEEEcCCCHHHHhhc
Q psy10229 184 EQSG---P--SIWGKHCILD-----VSGNAIKRL-QVASLYPVAIFIKPKSVESIICR 230 (231)
Q Consensus 184 ~~~~---~--~~wGk~cILD-----v~~qgvk~L-r~~~~~PivIFI~ppS~e~L~~~ 230 (231)
+..+ + ..-+.+-||- -|...+++| ...++.+..+|-.-.|+++|+.+
T Consensus 179 ~l~~~~~~~~~~~~~VNiiG~~~~~gd~~elk~lL~~~Gl~v~~~~~~~~s~eei~~~ 236 (475)
T PRK14478 179 HVIGTVEPEDTTPYDINILGEYNLAGELWQVKPLLDRLGIRVVACITGDARYDDVASA 236 (475)
T ss_pred HHhccCCccCCCCCeEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEcCCCCCHHHHHhc
Confidence 3211 0 1124455541 233444444 45677777666545678888765
No 97
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=40.58 E-value=3.3e+02 Score=25.84 Aligned_cols=114 Identities=12% Similarity=0.186 Sum_probs=58.8
Q ss_pred EEECCC---hHHHHHHHHhhCCCC-----cccccCCC-CCcchhH-HHHHHHHhc-cCceeEEeccCCcc----c-hHHH
Q psy10229 116 IILGPL---KDRINDDLISEFPEQ-----FGSCVPPL-GKMYDRS-MKMEQEFGE-FFTAVVQGDMPEDI----Y-QKVK 179 (231)
Q Consensus 116 VL~GPs---k~~l~~~Ll~~~P~~-----F~~~vp~T-G~dY~FV-e~fe~~i~~-~Fd~iE~g~~~g~~----Y-~sV~ 179 (231)
+++|-. ...|. .+.+.+|+- +..|++++ |.|..=| .+++....+ .+-.+...-|.|.. | .++.
T Consensus 67 ~VfGg~~~L~~aI~-~~~~~~p~p~~i~V~~tc~~~liGdDi~~v~~~~~~~~~~~~vi~v~tpgf~g~~~~~G~~~a~~ 145 (415)
T cd01977 67 VVFGGEKKLKKNII-EAFKEFPDIKRMTVYTTCTTALIGDDIKAVAKEVMEELPDVDIFVCNAPGFAGPSQSKGHHVLNI 145 (415)
T ss_pred eeeccHHHHHHHHH-HHHHhCCCCcEEEEECCCchhhhcCCHHHHHHHHHHhcCCCeEEEEeCCCcCCcchhHHHHHHHH
Confidence 355655 33333 344556542 56666766 8888777 777666553 33113334455532 2 3334
Q ss_pred HHHHhcCC---C--CCCCcEEEE-----EecHHHHH-HHHHcCCCcEEEEEcCCCHHHHhhc
Q psy10229 180 EVIQEQSG---P--SIWGKHCIL-----DVSGNAIK-RLQVASLYPVAIFIKPKSVESIICR 230 (231)
Q Consensus 180 ~v~~~~~~---~--~~wGk~cIL-----Dv~~qgvk-~Lr~~~~~PivIFI~ppS~e~L~~~ 230 (231)
+++++.-. + ...+++-|| .-|..-++ .|+..++.++.+|-.-.++++|+.+
T Consensus 146 al~~~l~~~~~~~~~~~~~VNliG~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~t~~ei~~~ 207 (415)
T cd01977 146 AWINQKVGTVEPEITSDYTINYIGDYNIQGDTEVLQKYFERMGIQVLSTFTGNGTYDDLRWM 207 (415)
T ss_pred HHHHHhhCcCCcCcCCCCcEEEEccCCCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhc
Confidence 44433211 1 112455555 22344444 3445677777666555788888765
No 98
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=40.41 E-value=73 Score=31.99 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=17.2
Q ss_pred ceEEEECCC---hHHHHHHHHhhC
Q psy10229 113 RPVIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~ 133 (231)
..|+|+|++ |+||.+.|....
T Consensus 393 ~~Ivl~Gl~GSGKSTia~~La~~L 416 (568)
T PRK05537 393 FTVFFTGLSGAGKSTIAKALMVKL 416 (568)
T ss_pred eEEEEECCCCChHHHHHHHHHHHh
Confidence 357889988 999999998753
No 99
>KOG4348|consensus
Probab=40.36 E-value=11 Score=37.06 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCccCCCCcccc--------ccccccc
Q psy10229 24 NSYLPMNPGLNSIFSFPPILE--------WHGRKKK 51 (231)
Q Consensus 24 ~~~~p~~~~~gl~F~~gdil~--------Wwqa~~~ 51 (231)
.+|.|-| +-.|.|+.|||++ ||.....
T Consensus 107 f~Y~pqn-dDELelkVGDiIeli~eVEeGWw~G~Ln 141 (627)
T KOG4348|consen 107 FAYSPQN-DDELELKVGDIIELISEVEEGWWKGKLN 141 (627)
T ss_pred EeecCCC-CceeeeeeccHHHhhhHhhhhhhhceec
Confidence 3789988 4556999999993 9998764
No 100
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=40.18 E-value=30 Score=27.80 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=18.6
Q ss_pred eEEEECCC---hHHHHHHHHhhCCCC
Q psy10229 114 PVIILGPL---KDRINDDLISEFPEQ 136 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~~P~~ 136 (231)
.|+|+|++ |++|.++|...++..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~ 26 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKK 26 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCcc
Confidence 37899999 999999998765443
No 101
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=40.03 E-value=33 Score=28.95 Aligned_cols=26 Identities=12% Similarity=0.029 Sum_probs=21.2
Q ss_pred CCCCceEEEECCC---hHHHHHHHHhhCC
Q psy10229 109 IDYARPVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 109 ~~~~RpVVL~GPs---k~~l~~~Ll~~~P 134 (231)
+.....|.|+||+ |+|+.+.|....+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4456778899998 9999999987655
No 102
>KOG1843|consensus
Probab=39.53 E-value=12 Score=36.43 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=16.1
Q ss_pred CccCCCCccc----------ccccccccc
Q psy10229 34 NSIFSFPPIL----------EWHGRKKKM 52 (231)
Q Consensus 34 gl~F~~gdil----------~Wwqa~~~~ 52 (231)
-|+|++|||| -||.++..+
T Consensus 432 Dl~f~kgDii~il~ks~s~~dwwtgr~~~ 460 (473)
T KOG1843|consen 432 DLSFQKGDIITILKKSDSANDWWTGRGNG 460 (473)
T ss_pred CcccccCceEEEecCCcchhhHHHhhccc
Confidence 4799999999 399998764
No 103
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=39.28 E-value=37 Score=26.88 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=15.6
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+|+. |++|+++|...
T Consensus 5 i~iiG~~~vGKTsli~~~~~~ 25 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTEK 25 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 6788999 99999999864
No 104
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=39.20 E-value=29 Score=26.92 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=19.2
Q ss_pred eEEEECCC---hHHHHHHHHhhCCCC
Q psy10229 114 PVIILGPL---KDRINDDLISEFPEQ 136 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~~P~~ 136 (231)
||+|.||+ |+++.+.|.+.....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~ 26 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRP 26 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcc
Confidence 79999999 999999888766443
No 105
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=39.05 E-value=1.3e+02 Score=30.85 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=34.0
Q ss_pred cchHHHHHHHhcCCCCCCCcEEEEEec--HHHH----HHHHHcCCCcEEEEEcCCCHHHHhh
Q psy10229 174 IYQKVKEVIQEQSGPSIWGKHCILDVS--GNAI----KRLQVASLYPVAIFIKPKSVESIIC 229 (231)
Q Consensus 174 ~Y~sV~~v~~~~~~~~~wGk~cILDv~--~qgv----k~Lr~~~~~PivIFI~ppS~e~L~~ 229 (231)
+|..+..+.+. ||..|+--+ |+.+ .+|++.--.-.++-|.+|+.+...+
T Consensus 399 LF~l~N~l~e~-------gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 399 FFHTFNTLHNA-------NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred HHHHHHHHHhc-------CCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 34667777777 887777543 3333 4566665578899999999887654
No 106
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=38.41 E-value=25 Score=26.15 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=20.0
Q ss_pred eEEeccCCccchHHHHHHHhcCCCCCCCcEEEEEecH---HHHHHHHHcCCCcEEEEEcCCCHHHHhh
Q psy10229 165 VVQGDMPEDIYQKVKEVIQEQSGPSIWGKHCILDVSG---NAIKRLQVASLYPVAIFIKPKSVESIIC 229 (231)
Q Consensus 165 iE~g~~~g~~Y~sV~~v~~~~~~~~~wGk~cILDv~~---qgvk~Lr~~~~~PivIFI~ppS~e~L~~ 229 (231)
+|.|.+.|..-..+-+.++... -++...+|..+ +..+.+++..+...+.|+.-.|.+.+.+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~----~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~ 64 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNG----RGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPS 64 (106)
T ss_dssp ------------------------------EEEESS------------GGG-BTEEEEES-THHHHHH
T ss_pred Cccccccccccccccccccccc----cCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHH
Confidence 5778777754433333333310 03688899988 6677777777778899999999887764
No 107
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=37.46 E-value=40 Score=26.17 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=16.3
Q ss_pred EEEECCC---hHHHHHHHHhhC
Q psy10229 115 VIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~ 133 (231)
|+|+|++ |++|.++|+...
T Consensus 3 i~liG~~~~GKSsli~~l~~~~ 24 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYDT 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6789999 999999998753
No 108
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=37.16 E-value=41 Score=25.19 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.9
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+|++ |++|++.|...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 6788988 99999999974
No 109
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=36.81 E-value=1.4e+02 Score=29.02 Aligned_cols=121 Identities=16% Similarity=0.311 Sum_probs=67.1
Q ss_pred eecceeeeeccC---CCCceEEEECCC---hHHHHHHH----HhhCCCCcccccCCCCCcc--hhH--------HHHHHH
Q psy10229 98 VLSYEPVTQMQI---DYARPVIILGPL---KDRINDDL----ISEFPEQFGSCVPPLGKMY--DRS--------MKMEQE 157 (231)
Q Consensus 98 ~~~Ye~V~~~~~---~~~RpVVL~GPs---k~~l~~~L----l~~~P~~F~~~vp~TG~dY--~FV--------e~fe~~ 157 (231)
-.+|..+..... ....||.|.||+ |++|.+.. .+..|+. ..+..|..+| .|| ++|.+.
T Consensus 96 ~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a--~v~y~~se~f~~~~v~a~~~~~~~~Fk~~ 173 (408)
T COG0593 96 RLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNA--RVVYLTSEDFTNDFVKALRDNEMEKFKEK 173 (408)
T ss_pred HHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCc--eEEeccHHHHHHHHHHHHHhhhHHHHHHh
Confidence 345665555442 246899999999 88887654 4445542 1122222222 223 233333
Q ss_pred Hhc-cCceeEEecc-------CCccchHHHHHHHhcCCCCCCCcEEEEEe--cHHHHH----HHHHcCCCcEEEEEcCCC
Q psy10229 158 FGE-FFTAVVQGDM-------PEDIYQKVKEVIQEQSGPSIWGKHCILDV--SGNAIK----RLQVASLYPVAIFIKPKS 223 (231)
Q Consensus 158 i~~-~Fd~iE~g~~-------~g~~Y~sV~~v~~~~~~~~~wGk~cILDv--~~qgvk----~Lr~~~~~PivIFI~ppS 223 (231)
+ + ..=.|+--++ ...++..+.++.+. ||-.||-- .|+.+. +|++.-=.-.++-|.||+
T Consensus 174 y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~-------~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd 245 (408)
T COG0593 174 Y-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN-------GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPD 245 (408)
T ss_pred h-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc-------CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCC
Confidence 3 3 2201222111 11234778888888 87666655 444443 677654456899999999
Q ss_pred HHHHh
Q psy10229 224 VESII 228 (231)
Q Consensus 224 ~e~L~ 228 (231)
.+...
T Consensus 246 ~e~r~ 250 (408)
T COG0593 246 DETRL 250 (408)
T ss_pred HHHHH
Confidence 88764
No 110
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=36.72 E-value=46 Score=25.71 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=16.1
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+|++ |++++++|+..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 6889999 99999999875
No 111
>PF13173 AAA_14: AAA domain
Probab=36.26 E-value=42 Score=26.02 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=19.6
Q ss_pred CceEEEECCC---hHHHHHHHHhhCC
Q psy10229 112 ARPVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~~P 134 (231)
.+.++|.||- |+++..++++...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 5778999999 9999999987654
No 112
>KOG0086|consensus
Probab=35.83 E-value=34 Score=29.56 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=25.2
Q ss_pred ceEEEECCC---hHHHHHHHHhhCCCCcccccCCC-CCc
Q psy10229 113 RPVIILGPL---KDRINDDLISEFPEQFGSCVPPL-GKM 147 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~T-G~d 147 (231)
--++|+||+ |+.|.++.++. +|.--++|| |++
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~---kfkDdssHTiGve 45 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIEN---KFKDDSSHTIGVE 45 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHh---hhcccccceeeee
Confidence 346788999 89999988874 677788999 654
No 113
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=35.32 E-value=38 Score=25.22 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=16.6
Q ss_pred EEEECCC---hHHHHHHHHhhC
Q psy10229 115 VIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~ 133 (231)
|+|.|++ |+||.+.|.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6789999 999999998874
No 114
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=35.24 E-value=79 Score=29.54 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.1
Q ss_pred CceEEEECCC---hHHHHHHHHhhCCC
Q psy10229 112 ARPVIILGPL---KDRINDDLISEFPE 135 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~~P~ 135 (231)
.+.+||+||. |+.|.-.|.+..+.
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~ 29 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGG 29 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 4568999999 99999999988764
No 115
>PRK00279 adk adenylate kinase; Reviewed
Probab=35.01 E-value=1.4e+02 Score=25.21 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=16.7
Q ss_pred EEEECCC---hHHHHHHHHhhCC
Q psy10229 115 VIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~P 134 (231)
|+|+||. |+++.++|.+.+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 7888987 9999999987653
No 116
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=34.56 E-value=3e+02 Score=26.76 Aligned_cols=102 Identities=16% Similarity=0.281 Sum_probs=55.9
Q ss_pred EEECCC---hHHHHHHHHhhC--CCC---cccccCCC-CCcchhH-HHHHHHHh-------c-cCceeEEeccCCccc--
Q psy10229 116 IILGPL---KDRINDDLISEF--PEQ---FGSCVPPL-GKMYDRS-MKMEQEFG-------E-FFTAVVQGDMPEDIY-- 175 (231)
Q Consensus 116 VL~GPs---k~~l~~~Ll~~~--P~~---F~~~vp~T-G~dY~FV-e~fe~~i~-------~-~Fd~iE~g~~~g~~Y-- 175 (231)
+++|-. +.. ++.+.+.+ |+. ...|+|.+ |.|+.=+ .+++..+. . ....+....|.|..+
T Consensus 72 ~VfGg~~~L~~a-i~~~~~~~~~p~~i~v~ttc~~eiiGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs~~~G 150 (461)
T TIGR02931 72 AVFGALDRVEEA-VDVLLTRYPDVKVVPIITTCSTEIIGDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVGSMITG 150 (461)
T ss_pred eEECcHHHHHHH-HHHHHHhcCCCCEEEEECCchHHhhhcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCcHHHH
Confidence 456755 222 23344455 443 36677777 9998888 77776652 1 110144455777665
Q ss_pred --hHHHHHHHhcCCC-CCCCcEEEEE--e---cHHHHHHHH-HcCCCcEEEE
Q psy10229 176 --QKVKEVIQEQSGP-SIWGKHCILD--V---SGNAIKRLQ-VASLYPVAIF 218 (231)
Q Consensus 176 --~sV~~v~~~~~~~-~~wGk~cILD--v---~~qgvk~Lr-~~~~~PivIF 218 (231)
.++++++++.-.+ ..-+++-||= . |...+++|- ..++.+.++|
T Consensus 151 y~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v~~l~ 202 (461)
T TIGR02931 151 YDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEANVLF 202 (461)
T ss_pred HHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCceEEee
Confidence 6777777653221 1235566654 2 333444433 4578888776
No 117
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=34.42 E-value=97 Score=25.66 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=16.5
Q ss_pred EEEECCC---hHHHHHHHHhhC
Q psy10229 115 VIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~ 133 (231)
|.|+||+ |+|+.+.|....
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999 999999998765
No 118
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=34.28 E-value=2.7e+02 Score=26.95 Aligned_cols=101 Identities=12% Similarity=0.136 Sum_probs=54.3
Q ss_pred EECCC---hHHHHHHHHhhCCCC---cccccCCC-CCcchhH-HHHHHHHh---c-cCceeEEeccCCccc----hHHHH
Q psy10229 117 ILGPL---KDRINDDLISEFPEQ---FGSCVPPL-GKMYDRS-MKMEQEFG---E-FFTAVVQGDMPEDIY----QKVKE 180 (231)
Q Consensus 117 L~GPs---k~~l~~~Ll~~~P~~---F~~~vp~T-G~dY~FV-e~fe~~i~---~-~Fd~iE~g~~~g~~Y----~sV~~ 180 (231)
++|-. +..|.+-.....|+. +..|++++ |.|+.=+ .+++.... . ..-.+....|.|+.+ .+++.
T Consensus 73 VfGg~~~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~~~G~~~a~~a 152 (455)
T PRK14476 73 ILGGDENVEEAILNICKKAKPKIIGLCTTGLTETRGDDVAGALKEIRARHPELADTPIVYVSTPDFKGALEDGWAAAVEA 152 (455)
T ss_pred EeCCHHHHHHHHHHHHHhhCCCEEEEeCcchHhhhhccHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHH
Confidence 56766 455555433345663 45666666 8887777 66665542 2 121144556777654 55666
Q ss_pred HHHhcCC-----CCCCCcEEEE---Ee---cHHHHHHH-HHcCCCcEEE
Q psy10229 181 VIQEQSG-----PSIWGKHCIL---DV---SGNAIKRL-QVASLYPVAI 217 (231)
Q Consensus 181 v~~~~~~-----~~~wGk~cIL---Dv---~~qgvk~L-r~~~~~PivI 217 (231)
++++.-. +...+++-|| ++ |..-+++| ...++.++++
T Consensus 153 l~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v~~l 201 (455)
T PRK14476 153 IVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEPIIL 201 (455)
T ss_pred HHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCceEEe
Confidence 6654222 2234667777 22 44455554 3456666443
No 119
>PF05729 NACHT: NACHT domain
Probab=33.79 E-value=45 Score=25.86 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=16.6
Q ss_pred ceEEEECCC---hHHHHHHHHhh
Q psy10229 113 RPVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+|.|+. |+++..+++..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHH
Confidence 789999998 99988877754
No 120
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=33.63 E-value=52 Score=28.66 Aligned_cols=33 Identities=24% Similarity=0.055 Sum_probs=24.7
Q ss_pred ecceeeeeccCCCCceEEEECCC---hHHHHHHHHh
Q psy10229 99 LSYEPVTQMQIDYARPVIILGPL---KDRINDDLIS 131 (231)
Q Consensus 99 ~~Ye~V~~~~~~~~RpVVL~GPs---k~~l~~~Ll~ 131 (231)
.+|..+.-.+++.+..++|+||+ |++|.+.|.-
T Consensus 12 ~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ 47 (251)
T cd03273 12 KSYATRTVISGFDPQFNAITGLNGSGKSNILDAICF 47 (251)
T ss_pred cccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 46776655545556788999999 9999988764
No 121
>KOG3125|consensus
Probab=33.48 E-value=79 Score=28.31 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=32.2
Q ss_pred chhHHHHHHHHhc-cCce--eEEeccCCccchHHHHHHHhcCCCCCCCcEEEE
Q psy10229 148 YDRSMKMEQEFGE-FFTA--VVQGDMPEDIYQKVKEVIQEQSGPSIWGKHCIL 197 (231)
Q Consensus 148 Y~FVe~fe~~i~~-~Fd~--iE~g~~~g~~Y~sV~~v~~~~~~~~~wGk~cIL 197 (231)
-+|.++|..++-+ +.+- |.-|.|.|.+|+..+++++.+ ||.++.
T Consensus 90 a~~~s~f~~d~~~~~vdVigIDEaQFf~dl~efc~evAd~~------Gk~Viv 136 (234)
T KOG3125|consen 90 ASFLSEFGKDALNGDVDVIGIDEAQFFGDLYEFCREVADVH------GKTVIV 136 (234)
T ss_pred chhHHHHHHHHhcCcceEEEecHHHHhHHHHHHHHHHHhcc------CCEEEE
Confidence 4566777777666 5533 456788889999999999943 998875
No 122
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=33.40 E-value=54 Score=24.09 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=19.8
Q ss_pred CCceEEEECCC---hHHHHHHHHhhC
Q psy10229 111 YARPVIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~~ 133 (231)
..++++|.||. |+++.+.+....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999 999999998865
No 123
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=33.26 E-value=45 Score=27.67 Aligned_cols=18 Identities=28% Similarity=0.528 Sum_probs=15.9
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+|++ |++|.++|+..
T Consensus 3 ivivG~~~vGKTsli~~l~~~ 23 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVHG 23 (201)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 6889999 99999999864
No 124
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=32.94 E-value=57 Score=25.85 Aligned_cols=20 Identities=10% Similarity=0.174 Sum_probs=16.9
Q ss_pred ceEEEECCC---hHHHHHHHHhh
Q psy10229 113 RPVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~ 132 (231)
.-|+|+|+. |++|.++|...
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 347889999 99999999864
No 125
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=32.71 E-value=44 Score=25.65 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=16.0
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+|++ |++|.++|+..
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 6889999 99999999874
No 126
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=32.62 E-value=3.8e+02 Score=25.62 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=54.1
Q ss_pred EECCC---hHHHHHHHHhhCCC---CcccccCCC-CCcchhH-HHHHHHH----hccCceeEEeccCCccc----hHHHH
Q psy10229 117 ILGPL---KDRINDDLISEFPE---QFGSCVPPL-GKMYDRS-MKMEQEF----GEFFTAVVQGDMPEDIY----QKVKE 180 (231)
Q Consensus 117 L~GPs---k~~l~~~Ll~~~P~---~F~~~vp~T-G~dY~FV-e~fe~~i----~~~Fd~iE~g~~~g~~Y----~sV~~ 180 (231)
++|-. +..|.+-.-...|+ .+..|+|++ |.|..-+ .+++... .-..-.+....|.|+.+ .+++.
T Consensus 62 VfGg~~~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~~G~~~a~~a 141 (417)
T cd01966 62 ILGGGENLEEALDTLAERAKPKVIGLLSTGLTETRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSLEDGWAAAVEA 141 (417)
T ss_pred EECCHHHHHHHHHHHHHhcCCCEEEEECCCcccccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHH
Confidence 56765 55555543344566 356777777 8887777 6666552 11111145566777655 66666
Q ss_pred HHHhcCCC-----CCCCcEEEE---EecHHHHHHHH----HcCCCcEEE
Q psy10229 181 VIQEQSGP-----SIWGKHCIL---DVSGNAIKRLQ----VASLYPVAI 217 (231)
Q Consensus 181 v~~~~~~~-----~~wGk~cIL---Dv~~qgvk~Lr----~~~~~PivI 217 (231)
++++.-.+ ...+++-|| .+.+.-++.|+ ..++.+.++
T Consensus 142 l~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~l 190 (417)
T cd01966 142 IIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPIIL 190 (417)
T ss_pred HHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEEe
Confidence 66543222 234667777 23343333333 345666443
No 127
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=32.36 E-value=48 Score=29.19 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=18.0
Q ss_pred cCCCCceEEEECCC---hHHHHHHH
Q psy10229 108 QIDYARPVIILGPL---KDRINDDL 129 (231)
Q Consensus 108 ~~~~~RpVVL~GPs---k~~l~~~L 129 (231)
.+...-++||+||| |++|.+-|
T Consensus 24 ~~~~getlvllgpsgagkssllr~l 48 (242)
T COG4161 24 DCPEGETLVLLGPSGAGKSSLLRVL 48 (242)
T ss_pred cCCCCCEEEEECCCCCchHHHHHHH
Confidence 45567899999999 89988865
No 128
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=32.34 E-value=1.7e+02 Score=24.41 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=17.8
Q ss_pred eEEEECCC---hHHHHHHHHhhCC
Q psy10229 114 PVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~~P 134 (231)
.++|+||+ |+++..+|....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 47889998 9999999988754
No 129
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=31.37 E-value=66 Score=23.19 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=20.2
Q ss_pred CceEEEECCC---hHHHHHHHHhhCCCC
Q psy10229 112 ARPVIILGPL---KDRINDDLISEFPEQ 136 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~~P~~ 136 (231)
.+.++|.||. |+++...|+......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 3568899999 999999998876553
No 130
>KOG0515|consensus
Probab=31.21 E-value=27 Score=35.44 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=16.0
Q ss_pred CCCccCCCCccc-----------ccccccccc
Q psy10229 32 GLNSIFSFPPIL-----------EWHGRKKKM 52 (231)
Q Consensus 32 ~~gl~F~~gdil-----------~Wwqa~~~~ 52 (231)
+-.|+|.-||-| +||-|+.-+
T Consensus 697 ~DELsf~eGd~lTvirr~d~~eteWWwa~lng 728 (752)
T KOG0515|consen 697 EDELSFDEGDELTVIRRDDEVETEWWWARLNG 728 (752)
T ss_pred cccccccCCceeEEEecCCcchhhhhhHhhcC
Confidence 345699999987 699888543
No 131
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=31.17 E-value=46 Score=26.70 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=16.1
Q ss_pred EEEECCC---hHHHHHHHHhhCCCCcccccCCC
Q psy10229 115 VIILGPL---KDRINDDLISEFPEQFGSCVPPL 144 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~T 144 (231)
|+|+|+. |+||.+.|.+. .+. +|+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~---g~~-~v~E~ 30 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR---GYP-VVPEY 30 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH---T-E-EE--T
T ss_pred EEEECCCCCCHHHHHHHHHHc---CCe-EEeec
Confidence 6788877 99999999887 332 45554
No 132
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=31.17 E-value=4.4e+02 Score=24.54 Aligned_cols=113 Identities=16% Similarity=0.143 Sum_probs=60.9
Q ss_pred ECCC---hHHHHHHHHhhCCCC---cccccCCC-CCcchhH-HHHHHHHhccCceeEEeccCC-ccc----hHHHHHHHh
Q psy10229 118 LGPL---KDRINDDLISEFPEQ---FGSCVPPL-GKMYDRS-MKMEQEFGEFFTAVVQGDMPE-DIY----QKVKEVIQE 184 (231)
Q Consensus 118 ~GPs---k~~l~~~Ll~~~P~~---F~~~vp~T-G~dY~FV-e~fe~~i~~~Fd~iE~g~~~g-~~Y----~sV~~v~~~ 184 (231)
+|-. ++.|.+-+-...|+. ..+|+|++ |.|+.-+ .++++...-.+-.+...-|.| +.+ .+++.+++.
T Consensus 69 ~Gg~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~~vi~v~t~gf~g~~~~~G~~~a~~al~~~ 148 (406)
T cd01967 69 FGGEKKLKKAIKEAYERFPPKAIFVYSTCPTGLIGDDIEAVAKEASKELGIPVIPVNCEGFRGVSQSLGHHIANDAILDH 148 (406)
T ss_pred eCcHHHHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhhCCCEEEEeCCCeeCCcccHHHHHHHHHHHHH
Confidence 5655 444444444446763 46667777 9988777 777665433331133445666 443 455555554
Q ss_pred cCCC-----CCCCcEEEEEe-----cHHHHHHHH-HcCCCcEEEEEcCCCHHHHhhc
Q psy10229 185 QSGP-----SIWGKHCILDV-----SGNAIKRLQ-VASLYPVAIFIKPKSVESIICR 230 (231)
Q Consensus 185 ~~~~-----~~wGk~cILDv-----~~qgvk~Lr-~~~~~PivIFI~ppS~e~L~~~ 230 (231)
.-.+ ...+.+-|+=. |...+++|- ..++.+..+|=.-.++++|+.+
T Consensus 149 l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~ 205 (406)
T cd01967 149 LVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGTVDELRRA 205 (406)
T ss_pred hcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhhC
Confidence 3221 12234444322 334444444 4567777666545788888865
No 133
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=31.16 E-value=54 Score=26.53 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=18.3
Q ss_pred CceEEEECCC---hHHHHHHHHhhCC
Q psy10229 112 ARPVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~~P 134 (231)
..-|+|+||+ |++|.++|....+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~ 44 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRL 44 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3447899999 9999999986543
No 134
>PRK06620 hypothetical protein; Validated
Probab=30.66 E-value=2.1e+02 Score=24.67 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=54.5
Q ss_pred ceEEEECCC---hHHHHHHHHhhCCCCcccccCCCCCcchhH-HHHHHHHhc-cCceeEEec-cCC-ccchHHHHHHHhc
Q psy10229 113 RPVIILGPL---KDRINDDLISEFPEQFGSCVPPLGKMYDRS-MKMEQEFGE-FFTAVVQGD-MPE-DIYQKVKEVIQEQ 185 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~TG~dY~FV-e~fe~~i~~-~Fd~iE~g~-~~g-~~Y~sV~~v~~~~ 185 (231)
++++|.||+ |++|.+-+.+ .++.+ .++.. |. +++-+. .+ -+ |+--+ ..+ .++.-+..+.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~-~~~~~--~~~~~-----~~~~~~~~~-~d~ll--iDdi~~~~~~~lf~l~N~~~e~- 112 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQN-LSNAY--IIKDI-----FFNEEILEK-YNAFI--IEDIENWQEPALLHIFNIINEK- 112 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHh-ccCCE--Ecchh-----hhchhHHhc-CCEEE--EeccccchHHHHHHHHHHHHhc-
Confidence 779999999 9999986544 33321 12211 11 212111 11 22 22111 111 223555666677
Q ss_pred CCCCCCCcEEEEEec--HHH--HHHHHHcCCCcEEEEEcCCCHHHHhh
Q psy10229 186 SGPSIWGKHCILDVS--GNA--IKRLQVASLYPVAIFIKPKSVESIIC 229 (231)
Q Consensus 186 ~~~~~wGk~cILDv~--~qg--vk~Lr~~~~~PivIFI~ppS~e~L~~ 229 (231)
|+..|+--+ |.. +..|++.--.-.++=|.||+.+.++.
T Consensus 113 ------g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~ 154 (214)
T PRK06620 113 ------QKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKI 154 (214)
T ss_pred ------CCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHH
Confidence 988887653 332 35667654456689999999887654
No 135
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=30.61 E-value=3.6e+02 Score=25.94 Aligned_cols=115 Identities=14% Similarity=0.162 Sum_probs=61.4
Q ss_pred EEECCC---hHHHHHHHHhhCCCC---cccccCCC-CCcchhH-HHHHHHHhccCceeEEeccCCccc----hHHHHHHH
Q psy10229 116 IILGPL---KDRINDDLISEFPEQ---FGSCVPPL-GKMYDRS-MKMEQEFGEFFTAVVQGDMPEDIY----QKVKEVIQ 183 (231)
Q Consensus 116 VL~GPs---k~~l~~~Ll~~~P~~---F~~~vp~T-G~dY~FV-e~fe~~i~~~Fd~iE~g~~~g~~Y----~sV~~v~~ 183 (231)
|++|-. +..|.+-+-...|+. +.+|+|++ |.|..=| .+++....-...-+....|.|..+ .+.+.+++
T Consensus 101 vVfGg~~kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi~~v~~e~~~~~~~~vi~v~t~gf~g~~~~G~~~a~~al~~ 180 (456)
T TIGR01283 101 VIFGGEKKLFHAIREIVERYHPPAVFVYSTCVPGLIGDDLEAVCKAAAEKTGIPVIPVDSEGFYGSKNLGNKLACDALLK 180 (456)
T ss_pred eEeCCHHHHHHHHHHHHHhCCCCEEEEECCChHHHhcCCHHHHHHHHHHHhCCCEEEEECCCCccchhHHHHHHHHHHHH
Confidence 457844 444444333335773 46666766 9988888 777665433331144455666543 34444443
Q ss_pred hcCC---C------CCCCcEEEEE-----ecHHHHHH-HHHcCCCcEEEEEcCCCHHHHhhc
Q psy10229 184 EQSG---P------SIWGKHCILD-----VSGNAIKR-LQVASLYPVAIFIKPKSVESIICR 230 (231)
Q Consensus 184 ~~~~---~------~~wGk~cILD-----v~~qgvk~-Lr~~~~~PivIFI~ppS~e~L~~~ 230 (231)
..-. + ..-+.+-||- -|...+++ |...++.+..+|-.-.|+++|+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~ 242 (456)
T TIGR01283 181 HVIGTREPEPIPVGTTVHDINLIGEFNVAGEFWHVKPLLEKLGIRVLATITGDSRYAEVQTA 242 (456)
T ss_pred HHhccCCcccccccCCCCcEEEEcCCCCcccHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhc
Confidence 3211 1 0124555552 13334444 445677777666555678888764
No 136
>PLN02200 adenylate kinase family protein
Probab=30.42 E-value=71 Score=28.05 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=25.3
Q ss_pred cceecceeeeeccC-CCCceEEEECCC---hHHHHHHHHhhC
Q psy10229 96 EGVLSYEPVTQMQI-DYARPVIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 96 ~~~~~Ye~V~~~~~-~~~RpVVL~GPs---k~~l~~~Ll~~~ 133 (231)
.++.+.|.+-.-+. ..+..|+|+||. |+|+..+|.+.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 26 TEIITLEERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred ccccccccccCCccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34455665554332 233457889998 999999998865
No 137
>PRK14527 adenylate kinase; Provisional
Probab=30.30 E-value=67 Score=26.64 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=19.0
Q ss_pred CCceEEEECCC---hHHHHHHHHhhC
Q psy10229 111 YARPVIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~~ 133 (231)
.+..|+|+||+ |+++.+.|.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44668899998 999999998765
No 138
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=30.28 E-value=58 Score=26.05 Aligned_cols=18 Identities=33% Similarity=0.279 Sum_probs=15.9
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+|+. |++|..+|...
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~ 22 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQD 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 6889998 99999999875
No 139
>PRK06893 DNA replication initiation factor; Validated
Probab=30.19 E-value=1.2e+02 Score=26.08 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=28.1
Q ss_pred hHHHHHHHhcCCCCCCCcEE-EE--EecHHHH----HHHHHcCCCcEEEEEcCCCHHHHhh
Q psy10229 176 QKVKEVIQEQSGPSIWGKHC-IL--DVSGNAI----KRLQVASLYPVAIFIKPKSVESIIC 229 (231)
Q Consensus 176 ~sV~~v~~~~~~~~~wGk~c-IL--Dv~~qgv----k~Lr~~~~~PivIFI~ppS~e~L~~ 229 (231)
.-+..+.++ |+.. |+ +..|..+ ..|++.--.-.++-|.||+.++..+
T Consensus 115 ~l~n~~~~~-------~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 115 DLFNRIKEQ-------GKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred HHHHHHHHc-------CCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 445666666 7654 44 4455554 3566543234466799999887654
No 140
>PLN02924 thymidylate kinase
Probab=30.14 E-value=3.7e+02 Score=23.35 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=19.4
Q ss_pred CCceEEEECCC---hHHHHHHHHhhCCC
Q psy10229 111 YARPVIILGPL---KDRINDDLISEFPE 135 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~~P~ 135 (231)
..+.|+|-|+- |+|+.+.|.+....
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~ 42 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKG 42 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45678899987 99999988776543
No 141
>KOG3354|consensus
Probab=30.09 E-value=2.9e+02 Score=24.10 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=31.9
Q ss_pred CCceEEEECCC---hHHHHHHHHhhCCCCcccccCCCCCcchhHHHHHHHHhc
Q psy10229 111 YARPVIILGPL---KDRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQEFGE 160 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~TG~dY~FVe~fe~~i~~ 160 (231)
++-.+|+.|++ |+|+-..|.++..-.| ..|.|||--+..|+|-+.
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F-----~dgDd~Hp~~NveKM~~G 58 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKF-----IDGDDLHPPANVEKMTQG 58 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCcc-----cccccCCCHHHHHHHhcC
Confidence 44567889999 9999999988765444 238889988444554444
No 142
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=29.97 E-value=52 Score=25.75 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.2
Q ss_pred ceEEEECCC---hHHHHHHHHhhCC
Q psy10229 113 RPVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~P 134 (231)
+.|+|+|++ |++|.++|....+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 358899998 9999999988643
No 143
>KOG1158|consensus
Probab=29.97 E-value=2.2e+02 Score=29.38 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=37.3
Q ss_pred eccCCCCceEEEECCC------hHHHHHHHHhhCCC-Ccccc------cCCCCCcchhHHHHHHHHhc-cC
Q psy10229 106 QMQIDYARPVIILGPL------KDRINDDLISEFPE-QFGSC------VPPLGKMYDRSMKMEQEFGE-FF 162 (231)
Q Consensus 106 ~~~~~~~RpVVL~GPs------k~~l~~~Ll~~~P~-~F~~~------vp~TG~dY~FVe~fe~~i~~-~F 162 (231)
+++++..+|||++||. ++-|-+|+.....+ .++.. ..+.-.||-|-+++++..+. .+
T Consensus 485 rlp~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l 555 (645)
T KOG1158|consen 485 RLPSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDEDYLYREEWEEYKKAGIL 555 (645)
T ss_pred ecCCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCCCchHHHHHHHHHHHHHhcCcc
Confidence 4445567899999999 77788888765443 22222 12335677777888887666 54
No 144
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=29.51 E-value=46 Score=25.50 Aligned_cols=19 Identities=21% Similarity=0.532 Sum_probs=16.6
Q ss_pred eEEEECCC---hHHHHHHHHhh
Q psy10229 114 PVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~ 132 (231)
-|+|+|++ |++|.++|...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 37899999 99999999865
No 145
>PRK00131 aroK shikimate kinase; Reviewed
Probab=29.35 E-value=76 Score=25.07 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=19.1
Q ss_pred CceEEEECCC---hHHHHHHHHhhCC
Q psy10229 112 ARPVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~~P 134 (231)
...|+|+||+ |+++.+.|.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 4678999988 9999999988753
No 146
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=29.19 E-value=55 Score=25.61 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=16.4
Q ss_pred EEEECCC---hHHHHHHHHhhC
Q psy10229 115 VIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~ 133 (231)
|+|+|+. |++|.++|...+
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhc
Confidence 6889999 999999998654
No 147
>PHA02757 hypothetical protein; Provisional
Probab=29.17 E-value=37 Score=25.02 Aligned_cols=21 Identities=24% Similarity=0.746 Sum_probs=19.0
Q ss_pred hHHHHHHHhcCCCCCCCcEEEEEecHHH
Q psy10229 176 QKVKEVIQEQSGPSIWGKHCILDVSGNA 203 (231)
Q Consensus 176 ~sV~~v~~~~~~~~~wGk~cILDv~~qg 203 (231)
..+++++++ .|.||+++++.+
T Consensus 36 e~~~eildk-------dK~CiiE~de~s 56 (75)
T PHA02757 36 EKANEILDK-------DKACIIEIDEDS 56 (75)
T ss_pred HHHHHHhcc-------cceEEEEEcCCC
Confidence 778999999 999999999874
No 148
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=29.03 E-value=46 Score=31.07 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.4
Q ss_pred EEEECCC---hHHHHHHHHhhCCCCc
Q psy10229 115 VIILGPL---KDRINDDLISEFPEQF 137 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~P~~F 137 (231)
+.|+|+| |++|.++....||..+
T Consensus 64 lLivG~snnGKT~Ii~rF~~~hp~~~ 89 (302)
T PF05621_consen 64 LLIVGDSNNGKTMIIERFRRLHPPQS 89 (302)
T ss_pred eEEecCCCCcHHHHHHHHHHHCCCCC
Confidence 7889999 9999999999998654
No 149
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=29.01 E-value=54 Score=25.10 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=15.9
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+||+ |++|.++|+..
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 6789999 99999999864
No 150
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=28.98 E-value=62 Score=25.21 Aligned_cols=21 Identities=14% Similarity=0.379 Sum_probs=17.5
Q ss_pred eEEEECCC---hHHHHHHHHhhCC
Q psy10229 114 PVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~~P 134 (231)
+|+|+||+ |+++.+.|.+...
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 47899988 9999999987653
No 151
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=28.77 E-value=3e+02 Score=27.55 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=20.0
Q ss_pred CCCCceEEEECCC---hHHHHHHHHhh
Q psy10229 109 IDYARPVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 109 ~~~~RpVVL~GPs---k~~l~~~Ll~~ 132 (231)
...+..||++|++ |+|+.++++..
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~ 392 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQP 392 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 3466788999988 99999999875
No 152
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=28.68 E-value=4.2e+02 Score=23.58 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=49.0
Q ss_pred CCceEEEECCC---hHHHHHHHHhhCCC--CcccccCCC------C---------CcchhHHHHHHHHhccCceeEEecc
Q psy10229 111 YARPVIILGPL---KDRINDDLISEFPE--QFGSCVPPL------G---------KMYDRSMKMEQEFGEFFTAVVQGDM 170 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~~P~--~F~~~vp~T------G---------~dY~FVe~fe~~i~~~Fd~iE~g~~ 170 (231)
....|+|+||. |+|+...|+...++ .-..++... | ..+.|.+.+...+...=|.|-.||.
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEi 158 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEI 158 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccC
Confidence 44679999999 99999988776542 111122111 1 1122323333333321122667777
Q ss_pred CCccc-hHHHHHHHhcCCCCCCCcEEEEEecH----HHHHHHHHcC
Q psy10229 171 PEDIY-QKVKEVIQEQSGPSIWGKHCILDVSG----NAIKRLQVAS 211 (231)
Q Consensus 171 ~g~~Y-~sV~~v~~~~~~~~~wGk~cILDv~~----qgvk~Lr~~~ 211 (231)
.+.-. .++-+++.. |..++--+.. .++.+|....
T Consensus 159 R~~e~a~~~~~aa~t-------Gh~v~tTlHa~~~~~ai~Rl~~~~ 197 (264)
T cd01129 159 RDAETAEIAVQAALT-------GHLVLSTLHTNDAPGAITRLLDMG 197 (264)
T ss_pred CCHHHHHHHHHHHHc-------CCcEEEEeccCCHHHHHHHHHHhC
Confidence 65432 333445555 7766655644 5566666543
No 153
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=28.67 E-value=2.9e+02 Score=26.78 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=32.9
Q ss_pred cchHHHHHHHhcCCCCCCCcEEEEE--ecHHHHH----HHHHcCCCcEEEEEcCCCHHHHhh
Q psy10229 174 IYQKVKEVIQEQSGPSIWGKHCILD--VSGNAIK----RLQVASLYPVAIFIKPKSVESIIC 229 (231)
Q Consensus 174 ~Y~sV~~v~~~~~~~~~wGk~cILD--v~~qgvk----~Lr~~~~~PivIFI~ppS~e~L~~ 229 (231)
+|..+....+. |+.+||- -.|.-+. +|+..--.-.++=|.||+.++..+
T Consensus 228 lf~l~N~~~~~-------~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 228 FFTIFNNFIEN-------DKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred HHHHHHHHHHc-------CCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 34666667777 8877776 4455543 455543356788899999988764
No 154
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.65 E-value=4.6e+02 Score=26.10 Aligned_cols=100 Identities=14% Similarity=0.174 Sum_probs=47.7
Q ss_pred eEEEECCC---hHHHHHHHHhhCCC----CcccccCCCCCcchhHHHHHHHHhccCceeEEeccCCccchHHHHHHHhcC
Q psy10229 114 PVIILGPL---KDRINDDLISEFPE----QFGSCVPPLGKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQS 186 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~~P~----~F~~~vp~TG~dY~FVe~fe~~i~~~Fd~iE~g~~~g~~Y~sV~~v~~~~~ 186 (231)
.++|.||. |+++...|.+.... ....| |.- .-...+...+...| +|..--...-.+.|+++++...
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pC----g~C-~sC~~i~~g~~~dv--iEIdaas~~gVd~IReL~e~l~ 114 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKRLNCENPIGNEPC----NEC-TSCLEITKGISSDV--LEIDAASNRGIENIRELRDNVK 114 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcccccCcccc----CCC-cHHHHHHccCCccc--eeechhhcccHHHHHHHHHHHH
Confidence 47999999 88888877765321 11111 110 00133333333345 5543211122355666555432
Q ss_pred CCCCC--CcEEEEE----ecHHHHHHHHH-cC-CCcEEEEEc
Q psy10229 187 GPSIW--GKHCILD----VSGNAIKRLQV-AS-LYPVAIFIK 220 (231)
Q Consensus 187 ~~~~w--Gk~cILD----v~~qgvk~Lr~-~~-~~PivIFI~ 220 (231)
..+.- .|++|+| ++..+...|.+ .+ ..+.+|||.
T Consensus 115 ~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFIL 156 (484)
T PRK14956 115 FAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFIL 156 (484)
T ss_pred hhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEe
Confidence 22222 3677777 34555555433 33 345667764
No 155
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=28.48 E-value=52 Score=28.99 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=25.2
Q ss_pred ecceeeeecc------CCCCceEEEECCC-hHHHHHHHHhhC
Q psy10229 99 LSYEPVTQMQ------IDYARPVIILGPL-KDRINDDLISEF 133 (231)
Q Consensus 99 ~~Ye~V~~~~------~~~~RpVVL~GPs-k~~l~~~Ll~~~ 133 (231)
.+|+-|..-- -...||+||.|=| .+.+..+|+++.
T Consensus 75 ~ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 75 LAYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHHH
Confidence 5787776421 3467999999999 666777777753
No 156
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=28.43 E-value=3.7e+02 Score=27.67 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=15.1
Q ss_pred eEEEECCC---hHHHHHHHHhh
Q psy10229 114 PVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~ 132 (231)
.++|.||. |+++...|.+.
T Consensus 40 AyLf~Gp~GvGKTTlAr~lAk~ 61 (647)
T PRK07994 40 AYLFSGTRGVGKTTIARLLAKG 61 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 37899999 88888777664
No 157
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=28.14 E-value=59 Score=26.32 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=21.6
Q ss_pred eeeccCCCCceEEEECCC---hHHHHHHHHhh
Q psy10229 104 VTQMQIDYARPVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 104 V~~~~~~~~RpVVL~GPs---k~~l~~~Ll~~ 132 (231)
+..+++....-|+|+|++ |++|+++|...
T Consensus 16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 333444455568999998 99999999874
No 158
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=27.90 E-value=59 Score=25.35 Aligned_cols=18 Identities=17% Similarity=0.420 Sum_probs=15.7
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+|+. |++|.++|+..
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 6788999 99999999863
No 159
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=27.85 E-value=1.4e+02 Score=29.76 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=20.0
Q ss_pred CCCCceEEEECCC---hHHHHHHHHhhC
Q psy10229 109 IDYARPVIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 109 ~~~~RpVVL~GPs---k~~l~~~Ll~~~ 133 (231)
|.+..+|||+|+. |++|-+.|.+..
T Consensus 3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L 30 (542)
T PRK14021 3 PTRRPQAVIIGMMGAGKTRVGKEVAQMM 30 (542)
T ss_pred CCCCccEEEECCCCCCHHHHHHHHHHHh
Confidence 4566789999987 999998887753
No 160
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=27.82 E-value=3.7e+02 Score=27.38 Aligned_cols=76 Identities=17% Similarity=0.224 Sum_probs=44.7
Q ss_pred cCCCCceEEEECCC------hHHHHHHHHhhCCC---CcccccCCCCCcchhHHHHHHHHhc-cCceeEEecc---CCcc
Q psy10229 108 QIDYARPVIILGPL------KDRINDDLISEFPE---QFGSCVPPLGKMYDRSMKMEQEFGE-FFTAVVQGDM---PEDI 174 (231)
Q Consensus 108 ~~~~~RpVVL~GPs------k~~l~~~Ll~~~P~---~F~~~vp~TG~dY~FVe~fe~~i~~-~Fd~iE~g~~---~g~~ 174 (231)
+.+..+|||++||. +.-|.+|+-..... .| +-.+|--.||.|-++.++-.++ ..+.+-.+-. .+..
T Consensus 436 p~~~~~PiIMIG~GTGIAPFRafvq~r~~~~~~gk~wLf-FG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~~Ki 514 (587)
T COG0369 436 PEDPETPIIMIGPGTGIAPFRAFVQERAANGAEGKNWLF-FGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQEEKI 514 (587)
T ss_pred CCCCCCceEEEcCCCCchhHHHHHHHHHhccccCceEEE-ecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCCCCc
Confidence 34445999999999 77777777665442 33 2335544677776777766665 3433322221 2345
Q ss_pred c---------hHHHHHHHh
Q psy10229 175 Y---------QKVKEVIQE 184 (231)
Q Consensus 175 Y---------~sV~~v~~~ 184 (231)
| +.|.+.+++
T Consensus 515 YVQd~lre~~del~~~l~~ 533 (587)
T COG0369 515 YVQDRLREQADELWEWLEE 533 (587)
T ss_pred cHHHHHHHhHHHHHHHHHC
Confidence 6 556666666
No 161
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=27.57 E-value=73 Score=26.45 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=17.1
Q ss_pred ceEEEECCC---hHHHHHHHHhh
Q psy10229 113 RPVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~ 132 (231)
.-|+|+|+. |++|.++|+..
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~ 29 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADN 29 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 458899999 99999999864
No 162
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=27.36 E-value=37 Score=30.26 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=18.8
Q ss_pred ceEEEECCC---hHHHHHHHHhhCC
Q psy10229 113 RPVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~P 134 (231)
.-|||.||- |+||.++|.+..+
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHHhC
Confidence 457888988 9999999999876
No 163
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=27.18 E-value=39 Score=30.56 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=15.0
Q ss_pred eEEEECCC---hHHHHHHHHhhCCC
Q psy10229 114 PVIILGPL---KDRINDDLISEFPE 135 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~~P~ 135 (231)
.|||+|.. |+++.+.|.+.+++
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46788854 99999988876543
No 164
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=27.08 E-value=72 Score=28.37 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=22.0
Q ss_pred ceEEEECCC---hHHHHHHHHhhCCCCcccccC
Q psy10229 113 RPVIILGPL---KDRINDDLISEFPEQFGSCVP 142 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp 142 (231)
..|-|.|+| |+|+.++|.+.++......++
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~ 41 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVIS 41 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcCcceEee
Confidence 455678999 999999999988754333333
No 165
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=26.88 E-value=61 Score=25.21 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.7
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+|++ |++|.++|+..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 6789999 99999999864
No 166
>PRK13808 adenylate kinase; Provisional
Probab=26.87 E-value=4e+02 Score=25.14 Aligned_cols=19 Identities=32% Similarity=0.704 Sum_probs=16.5
Q ss_pred EEEECCC---hHHHHHHHHhhC
Q psy10229 115 VIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~ 133 (231)
|||+||. |+++..+|.+.|
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889998 999999998865
No 167
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=26.86 E-value=83 Score=26.74 Aligned_cols=22 Identities=18% Similarity=0.079 Sum_probs=17.7
Q ss_pred ceEEEECCC---hHHHHHHHHhhCC
Q psy10229 113 RPVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~P 134 (231)
..+.|+||+ |+||+++|+....
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHh
Confidence 356889999 9999999987643
No 168
>PLN02199 shikimate kinase
Probab=26.52 E-value=4.5e+02 Score=24.62 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=18.2
Q ss_pred CCceEEEECCC---hHHHHHHHHhh
Q psy10229 111 YARPVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~ 132 (231)
..++|+|+|+. |++|-+.|.+.
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~ 125 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKV 125 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999988 99998888764
No 169
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=26.39 E-value=62 Score=25.10 Aligned_cols=19 Identities=16% Similarity=0.308 Sum_probs=16.4
Q ss_pred EEEECCC---hHHHHHHHHhhC
Q psy10229 115 VIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~ 133 (231)
|+++||+ |+++.++|+...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6789999 999999998753
No 170
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=26.39 E-value=76 Score=26.03 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=15.4
Q ss_pred eEEEECCC---hHHHHHHHHh
Q psy10229 114 PVIILGPL---KDRINDDLIS 131 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~ 131 (231)
=|+|+|+. |++|..++..
T Consensus 19 kv~lvG~~~vGKTsli~~~~~ 39 (182)
T PTZ00133 19 RILMVGLDAAGKTTILYKLKL 39 (182)
T ss_pred EEEEEcCCCCCHHHHHHHHhc
Confidence 38889999 9999999964
No 171
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=26.24 E-value=5.1e+02 Score=23.68 Aligned_cols=19 Identities=32% Similarity=0.207 Sum_probs=16.2
Q ss_pred CceEEEECCC---hHHHHHHHH
Q psy10229 112 ARPVIILGPL---KDRINDDLI 130 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll 130 (231)
.+.|+|+|++ |+++.+.|-
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH
Confidence 3678999999 999999884
No 172
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=26.23 E-value=72 Score=25.53 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=16.2
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+|+. |++|..+|...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 7899999 99999999975
No 173
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=26.00 E-value=57 Score=24.61 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=15.9
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+||+ |++|.++|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 6889998 99999999874
No 174
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=25.95 E-value=76 Score=26.86 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=16.6
Q ss_pred eEEEECCC---hHHHHHHHHhh
Q psy10229 114 PVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~ 132 (231)
-|+|+|++ |++|.++|+..
T Consensus 4 KIvvvG~~~vGKTsLi~~l~~~ 25 (211)
T cd04111 4 RLIVIGDSTVGKSSLLKRFTEG 25 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 47899999 99999999864
No 175
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=25.94 E-value=77 Score=25.52 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=15.7
Q ss_pred eEEEECCC---hHHHHHHHHh
Q psy10229 114 PVIILGPL---KDRINDDLIS 131 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~ 131 (231)
-|+|+|++ |++|+.+|..
T Consensus 11 kv~i~G~~~~GKTsli~~l~~ 31 (168)
T cd04149 11 RILMLGLDAAGKTTILYKLKL 31 (168)
T ss_pred EEEEECcCCCCHHHHHHHHcc
Confidence 47899999 9999999975
No 176
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=25.88 E-value=77 Score=23.58 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=16.7
Q ss_pred EEEECCC---hHHHHHHHHhhC
Q psy10229 115 VIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~ 133 (231)
|+|.||. |+++.+.|.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6889998 999999998874
No 177
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=25.79 E-value=74 Score=24.76 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=15.2
Q ss_pred EEEECCC---hHHHHHHHHh
Q psy10229 115 VIILGPL---KDRINDDLIS 131 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~ 131 (231)
|+++|++ |++|.++|..
T Consensus 3 i~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 6789999 9999999985
No 178
>KOG0745|consensus
Probab=25.59 E-value=96 Score=31.03 Aligned_cols=98 Identities=18% Similarity=0.337 Sum_probs=52.6
Q ss_pred ceEEEECCC---hHHHHHHHHhh--CCCCcccccCCC-----CCcchhHHHHHHHHhc-cCceeEEeccCCccc-hHHHH
Q psy10229 113 RPVIILGPL---KDRINDDLISE--FPEQFGSCVPPL-----GKMYDRSMKMEQEFGE-FFTAVVQGDMPEDIY-QKVKE 180 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~--~P~~F~~~vp~T-----G~dY~FVe~fe~~i~~-~Fd~iE~g~~~g~~Y-~sV~~ 180 (231)
--|+|+||+ |+-|.+.|.+- -|=..+-|-+-| |.|-.-| +++.+.+ +| .+|-++ .|..| +.|..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsv--i~KLl~~A~~-nVekAQ-qGIVflDEvDK 302 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESV--IQKLLQEAEY-NVEKAQ-QGIVFLDEVDK 302 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHH--HHHHHHHccC-CHHHHh-cCeEEEehhhh
Confidence 358899999 66677777553 342222233333 4443322 3334444 44 122222 24455 88888
Q ss_pred HHHhcCCCCCCCcEEEEEecHHHHHHHHHcCCCcEEEEE
Q psy10229 181 VIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFI 219 (231)
Q Consensus 181 v~~~~~~~~~wGk~cILDv~~qgvk~Lr~~~~~PivIFI 219 (231)
|..++. |-|..=||+..||++---.-+.--+|-|
T Consensus 303 i~~~~~-----~i~~~RDVsGEGVQQaLLKllEGtvVnV 336 (564)
T KOG0745|consen 303 ITKKAE-----SIHTSRDVSGEGVQQALLKLLEGTVVNV 336 (564)
T ss_pred hcccCc-----cccccccccchhHHHHHHHHhcccEEcc
Confidence 874422 6666679999999885433333333333
No 179
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=25.58 E-value=56 Score=26.04 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.1
Q ss_pred CCCCceEEEECCC--hHHHHHHHHhhCC
Q psy10229 109 IDYARPVIILGPL--KDRINDDLISEFP 134 (231)
Q Consensus 109 ~~~~RpVVL~GPs--k~~l~~~Ll~~~P 134 (231)
....++|||.||. |+.+.+.|..+++
T Consensus 71 ~~~~~~iIiaGPGf~k~~f~~~l~~~~~ 98 (133)
T PF03464_consen 71 FDDVKCIIIAGPGFTKEEFYKYLKAEAR 98 (133)
T ss_dssp TTTCSEEEEEESTTHHHHHHHHHHHHHH
T ss_pred cccccEEEEECCHHHHHHHHHHHHHhhH
Confidence 4567999999999 9999998888766
No 180
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=25.53 E-value=2.3e+02 Score=25.23 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=20.7
Q ss_pred cCCCCceEEEECCC---hHHHHHHHHhhCCC
Q psy10229 108 QIDYARPVIILGPL---KDRINDDLISEFPE 135 (231)
Q Consensus 108 ~~~~~RpVVL~GPs---k~~l~~~Ll~~~P~ 135 (231)
|.....-++|+||+ |+++.+.+.+....
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 34455667788888 99999999876543
No 181
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=25.45 E-value=88 Score=24.23 Aligned_cols=20 Identities=30% Similarity=0.155 Sum_probs=16.9
Q ss_pred EEEECCC---hHHHHHHHHhhCC
Q psy10229 115 VIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~P 134 (231)
|+|+|+. |+++.++|+...+
T Consensus 2 i~iiG~~~~GKssli~~~~~~~~ 24 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEV 24 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Confidence 6788988 9999999998754
No 182
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=25.31 E-value=66 Score=24.83 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=15.8
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+++|++ |+++.++|...
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 6789999 99999999864
No 183
>PRK06696 uridine kinase; Validated
Probab=25.21 E-value=55 Score=28.07 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=20.4
Q ss_pred CCCceEEEECCC---hHHHHHHHHhhCCC
Q psy10229 110 DYARPVIILGPL---KDRINDDLISEFPE 135 (231)
Q Consensus 110 ~~~RpVVL~GPs---k~~l~~~Ll~~~P~ 135 (231)
..+..|.|.||+ |+|+.++|.+..+.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445567889999 99999999887653
No 184
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=25.18 E-value=67 Score=26.55 Aligned_cols=21 Identities=19% Similarity=0.350 Sum_probs=17.6
Q ss_pred ceEEEECCC---hHHHHHHHHhhC
Q psy10229 113 RPVIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~ 133 (231)
.=||++||. |+++..+|....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 457889999 999999999853
No 185
>PRK06547 hypothetical protein; Provisional
Probab=24.91 E-value=67 Score=26.89 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=18.9
Q ss_pred CCCceEEEECCC---hHHHHHHHHhhC
Q psy10229 110 DYARPVIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 110 ~~~RpVVL~GPs---k~~l~~~Ll~~~ 133 (231)
.....|+|.||+ |+++.+.|.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 445567777999 999999998863
No 186
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=24.79 E-value=74 Score=25.86 Aligned_cols=19 Identities=26% Similarity=0.658 Sum_probs=16.3
Q ss_pred EEEECCC---hHHHHHHHHhhC
Q psy10229 115 VIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~ 133 (231)
|+|+||. |+++.++|.+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6888987 999999998864
No 187
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=24.77 E-value=70 Score=25.82 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=16.2
Q ss_pred EEEECCC---hHHHHHHHHhhCC
Q psy10229 115 VIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~P 134 (231)
|.|+||+ |+++++.|++..-
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 5678999 9999999887543
No 188
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=24.59 E-value=76 Score=25.06 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=17.1
Q ss_pred ceEEEECCC---hHHHHHHHHhh
Q psy10229 113 RPVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~ 132 (231)
+-|+|+|++ |++|..+|...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~ 24 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKD 24 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 458899999 99999999874
No 189
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=24.48 E-value=63 Score=29.27 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=17.7
Q ss_pred CCCceEEEECCC---hHHHHHHHHh
Q psy10229 110 DYARPVIILGPL---KDRINDDLIS 131 (231)
Q Consensus 110 ~~~RpVVL~GPs---k~~l~~~Ll~ 131 (231)
....-|+|+||| |+|+.+-|-.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 456778999999 9999887744
No 190
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=24.38 E-value=78 Score=26.67 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=15.8
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+|++ |++|.++|...
T Consensus 3 i~ivG~~~vGKSsLi~~l~~~ 23 (215)
T cd04109 3 IVVLGDGAVGKTSLCRRFAKE 23 (215)
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 6889998 99999999863
No 191
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=24.31 E-value=85 Score=26.71 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=16.2
Q ss_pred eEEEECCC---hHHHHHHHHhh
Q psy10229 114 PVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~ 132 (231)
-||++|.+ |++|+.+++..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~ 23 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDD 23 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 37899998 99999999863
No 192
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=24.22 E-value=1.1e+02 Score=24.86 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=18.3
Q ss_pred CCCceEEEECCC---hHHHHHHHHhh
Q psy10229 110 DYARPVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 110 ~~~RpVVL~GPs---k~~l~~~Ll~~ 132 (231)
....-|+|+|++ |+++.++|...
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 344457889999 99999999875
No 193
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=24.10 E-value=91 Score=21.73 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=16.4
Q ss_pred EEEECCC---hHHHHHHHHhhC
Q psy10229 115 VIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~ 133 (231)
|+|.|++ |+++.+.|.+.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788998 999999998874
No 194
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=24.04 E-value=71 Score=24.57 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=16.1
Q ss_pred eEEEECCC---hHHHHHHHHhh
Q psy10229 114 PVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~ 132 (231)
-|+|+|++ |++|.++|...
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~ 23 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI 23 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCc
Confidence 36889998 99999999854
No 195
>COG1162 Predicted GTPases [General function prediction only]
Probab=23.87 E-value=61 Score=30.26 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.3
Q ss_pred CCceEEEECCC---hHHHHHHHHhh
Q psy10229 111 YARPVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~ 132 (231)
..+..||+|+| |++|+++|.-+
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCch
Confidence 56789999999 99999999854
No 196
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=23.80 E-value=74 Score=25.00 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=15.1
Q ss_pred EEEECCC---hHHHHHHHHh
Q psy10229 115 VIILGPL---KDRINDDLIS 131 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~ 131 (231)
|+|+|++ |++|+++|+.
T Consensus 2 i~vvG~~~~GKtsli~~~~~ 21 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLT 21 (165)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 6889998 9999999985
No 197
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=23.65 E-value=73 Score=24.86 Aligned_cols=18 Identities=33% Similarity=0.577 Sum_probs=15.8
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+|++ |+++.++|+..
T Consensus 3 i~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 6789999 99999999874
No 198
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=23.65 E-value=99 Score=25.02 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=21.0
Q ss_pred ceEEEECCC---hHHHHHHHHhhCCCCcccccCCCCCc
Q psy10229 113 RPVIILGPL---KDRINDDLISEFPEQFGSCVPPLGKM 147 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~TG~d 147 (231)
.-|+|+|+. |++|..+|.. +.|...+|-+|.+
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~---~~~~~~~~t~~~~ 48 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKL---GESVTTIPTIGFN 48 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhc---CCCCCcCCccccc
Confidence 348889999 9999999964 2343334433543
No 199
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=23.65 E-value=87 Score=24.15 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=15.8
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+|++ |++|.++|...
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~ 22 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPE 22 (162)
T ss_pred EEEECCCCCCHHHHHHHHccc
Confidence 6788998 99999999874
No 200
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=23.44 E-value=66 Score=26.69 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=16.4
Q ss_pred eEEEECCC---hHHHHHHHHhh
Q psy10229 114 PVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~ 132 (231)
=|+|+||+ |++|.++|..+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 36788999 99999999875
No 201
>PRK03839 putative kinase; Provisional
Probab=23.34 E-value=86 Score=25.54 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=17.1
Q ss_pred eEEEECCC---hHHHHHHHHhhC
Q psy10229 114 PVIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~~ 133 (231)
.|+|+||+ |+|+.++|.+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38899998 999999998864
No 202
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=23.31 E-value=1.1e+02 Score=24.41 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=17.1
Q ss_pred ceEEEECCC---hHHHHHHHHhh
Q psy10229 113 RPVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~ 132 (231)
.-|+|+|++ |++|.++|...
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~ 37 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGE 37 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccC
Confidence 347899999 99999999875
No 203
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=23.29 E-value=79 Score=24.95 Aligned_cols=18 Identities=17% Similarity=0.253 Sum_probs=16.0
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+|+. |++|.++|...
T Consensus 4 i~i~G~~~~GKSsli~~l~~~ 24 (165)
T cd01865 4 LLIIGNSSVGKTSFLFRYADD 24 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 7889999 99999999874
No 204
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=23.24 E-value=82 Score=25.06 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=15.4
Q ss_pred CCCCceEEEECCC---hHHHHHHHHhhCCC
Q psy10229 109 IDYARPVIILGPL---KDRINDDLISEFPE 135 (231)
Q Consensus 109 ~~~~RpVVL~GPs---k~~l~~~Ll~~~P~ 135 (231)
....+.++|.||+ |+++.++++.....
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456889999999 99999888775433
No 205
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=23.14 E-value=72 Score=23.25 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=25.1
Q ss_pred CceEEEECCChHHHHHHHHhhCCCCccccc
Q psy10229 112 ARPVIILGPLKDRINDDLISEFPEQFGSCV 141 (231)
Q Consensus 112 ~RpVVL~GPsk~~l~~~Ll~~~P~~F~~~v 141 (231)
.-.|||+-|.++.|.++|=..-|.+|+.-|
T Consensus 34 ~G~~iIidpe~SeIAkrlgi~~Pg~yAl~V 63 (64)
T COG2093 34 FGLLIIIDPEKSEIAKRLGIKIPGKYALRV 63 (64)
T ss_pred ccEEEEEcCcHHHHHHHhCCCCCceEEEEe
Confidence 457888999999999999888899987643
No 206
>PRK12289 GTPase RsgA; Reviewed
Probab=23.08 E-value=64 Score=30.38 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=18.1
Q ss_pred CceEEEECCC---hHHHHHHHHhh
Q psy10229 112 ARPVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~ 132 (231)
.+.++|+||| |++|++.|+..
T Consensus 172 ~ki~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 172 NKITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred cceEEEEeCCCCCHHHHHHHHcCc
Confidence 3578999999 99999999854
No 207
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=23.03 E-value=82 Score=27.04 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=16.2
Q ss_pred CCceEEEECCC---hHHHHHHHHhh
Q psy10229 111 YARPVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~ 132 (231)
+++.|+|+||+ |++|..+|...
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHS
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcC
Confidence 34668999999 99999999875
No 208
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=22.93 E-value=58 Score=23.77 Aligned_cols=13 Identities=38% Similarity=0.623 Sum_probs=9.4
Q ss_pred CCcchhH--HHHHHH
Q psy10229 145 GKMYDRS--MKMEQE 157 (231)
Q Consensus 145 G~dY~FV--e~fe~~ 157 (231)
|.|||.| +.|++.
T Consensus 45 G~DYH~vlk~~L~~l 59 (78)
T PF08331_consen 45 GRDYHKVLKKKLEQL 59 (78)
T ss_pred cCChHHHHHHHHHHH
Confidence 9999998 444443
No 209
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=22.84 E-value=81 Score=24.26 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.7
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+|++ |+++.++|+..
T Consensus 3 i~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 6889999 99999999864
No 210
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=22.79 E-value=92 Score=23.35 Aligned_cols=18 Identities=11% Similarity=0.351 Sum_probs=15.8
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+++|+. |+++.++|...
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 6789999 99999999865
No 211
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=22.73 E-value=83 Score=24.05 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=15.9
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+++|++ |+++.++|+..
T Consensus 3 i~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 6789999 99999999874
No 212
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=22.47 E-value=7e+02 Score=24.14 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=59.8
Q ss_pred EEECCC---hHHHHHHHHhhCCCC-----cccccCCC-CCcchhH-HHHHHHHhc-cCceeEEeccCCcc----c-hHHH
Q psy10229 116 IILGPL---KDRINDDLISEFPEQ-----FGSCVPPL-GKMYDRS-MKMEQEFGE-FFTAVVQGDMPEDI----Y-QKVK 179 (231)
Q Consensus 116 VL~GPs---k~~l~~~Ll~~~P~~-----F~~~vp~T-G~dY~FV-e~fe~~i~~-~Fd~iE~g~~~g~~----Y-~sV~ 179 (231)
|++|-. +..|.+ +.+.+|+- ++.|++.+ |.|..=| .+++....+ .+-.+...-|.|.. | .++.
T Consensus 104 iVfGge~kL~~aI~e-~~~~~p~p~~I~V~stC~~~lIGDDi~~v~~e~~~~~~~~pvv~v~t~gf~g~s~~~G~~~a~~ 182 (457)
T TIGR01284 104 VVFGGEKKLKRCILE-AFREFPEIKRMYTYATCTTALIGDDIDAIAREVMEEIPDVDVFAINAPGFAGPSQSKGHHVANI 182 (457)
T ss_pred eEecHHHHHHHHHHH-HHHhCCCCceEEEECCChHHhhccCHHHHHHHHHHhcCCCeEEEeeCCCcCCcccchHHHHHHH
Confidence 356655 344443 44567532 56777776 8888888 777766543 33113334455532 2 3344
Q ss_pred HHHHhcCC-----CCCCCcEEEEE-----ecHHHH-HHHHHcCCCcEEEEEcCCCHHHHhhc
Q psy10229 180 EVIQEQSG-----PSIWGKHCILD-----VSGNAI-KRLQVASLYPVAIFIKPKSVESIICR 230 (231)
Q Consensus 180 ~v~~~~~~-----~~~wGk~cILD-----v~~qgv-k~Lr~~~~~PivIFI~ppS~e~L~~~ 230 (231)
.++++... +..-+++-||= =|..-+ +-|...++.++.+|---.++++|+.+
T Consensus 183 al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~el~~lL~~~Gl~v~~~~~g~~s~~ei~~~ 244 (457)
T TIGR01284 183 TWINDKVGTAEPEITTEYDVNLIGEYNIQGDLWVLKKYFERMGIQVLSTFTGNGCYDELRWM 244 (457)
T ss_pred HHHHHHhCccCcccCCCCeEEEEccCCchhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHhc
Confidence 44443221 11224555551 122333 33445678887777656778888765
No 213
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=22.35 E-value=94 Score=25.36 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=17.0
Q ss_pred eEEEECCC---hHHHHHHHHh-hCCC
Q psy10229 114 PVIILGPL---KDRINDDLIS-EFPE 135 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~-~~P~ 135 (231)
=|+|+||+ |++|.++|.. .+++
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~ 28 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPE 28 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc
Confidence 47889999 9999999973 4443
No 214
>PRK13342 recombination factor protein RarA; Reviewed
Probab=22.32 E-value=5.2e+02 Score=24.42 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=20.5
Q ss_pred CCceEEEECCC---hHHHHHHHHhhCCCCc
Q psy10229 111 YARPVIILGPL---KDRINDDLISEFPEQF 137 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~~P~~F 137 (231)
....++|.||. |+++.+.|.+.....|
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~ 64 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPF 64 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 44578999999 9999998877644444
No 215
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=22.16 E-value=85 Score=27.66 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.4
Q ss_pred CceEEEECCC---hHHHHHHHHhh
Q psy10229 112 ARPVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~~ 132 (231)
.+.++|+|+| |++|++.|+..
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhh
Confidence 4688999999 99999999864
No 216
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=22.07 E-value=88 Score=26.38 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=21.3
Q ss_pred cCCCCceEEEECCC---hHHHHHHHHhhCC
Q psy10229 108 QIDYARPVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 108 ~~~~~RpVVL~GPs---k~~l~~~Ll~~~P 134 (231)
.....+-|.|+|+. |+++.++|+....
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34456778899998 9999999998744
No 217
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=21.96 E-value=88 Score=24.39 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=15.9
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+|+. |+++.++|...
T Consensus 3 i~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 6789998 99999999875
No 218
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=21.85 E-value=85 Score=24.58 Aligned_cols=18 Identities=11% Similarity=0.287 Sum_probs=15.8
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+|++ |++|.++|+..
T Consensus 5 i~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 5 LLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 6788999 99999999864
No 219
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=21.78 E-value=1e+02 Score=24.84 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=15.9
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+++|.. |++|.++++..
T Consensus 3 i~ivG~~~vGKTsli~~~~~~ 23 (170)
T cd04108 3 VIVVGDLSVGKTCLINRFCKD 23 (170)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 6789998 99999999875
No 220
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=21.66 E-value=4.5e+02 Score=21.41 Aligned_cols=98 Identities=20% Similarity=0.201 Sum_probs=51.5
Q ss_pred ceEEEECCC---hHHHHHHHHhh----CCCCcccccCCCCCcchhH-HHHHHHHhccCceeEEeccCC--ccc-hHHHHH
Q psy10229 113 RPVIILGPL---KDRINDDLISE----FPEQFGSCVPPLGKMYDRS-MKMEQEFGEFFTAVVQGDMPE--DIY-QKVKEV 181 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~----~P~~F~~~vp~TG~dY~FV-e~fe~~i~~~Fd~iE~g~~~g--~~Y-~sV~~v 181 (231)
..++|.||. |.++...|+.. .+..- +.. . .-. ..++......| .+...... +.- +.|+++
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~----~c~-~--c~~c~~~~~~~~~d~--~~~~~~~~~~~i~i~~ir~i 90 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFARALLCSNPNED----PCG-E--CRSCRRIEEGNHPDF--IIIKPDKKKKSIKIDQIREI 90 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT------S-S--SHHHHHHHTT-CTTE--EEEETTTSSSSBSHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC----CCC-C--CHHHHHHHhccCcce--EEEecccccchhhHHHHHHH
Confidence 457899998 67766666553 22110 111 0 000 22222111144 55544433 333 999999
Q ss_pred HHhcCCCCCC--CcEEEEE----ecHHHHHHHHHc--CCCcEEEEE
Q psy10229 182 IQEQSGPSIW--GKHCILD----VSGNAIKRLQVA--SLYPVAIFI 219 (231)
Q Consensus 182 ~~~~~~~~~w--Gk~cILD----v~~qgvk~Lr~~--~~~PivIFI 219 (231)
.+..+.++.. -|++|+| ++.+|.-.|.+. ++.+.++||
T Consensus 91 ~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 91 IEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp HHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred HHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 9987777776 7888886 466777666653 343344444
No 221
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=21.65 E-value=63 Score=27.07 Aligned_cols=28 Identities=21% Similarity=0.460 Sum_probs=23.5
Q ss_pred CceEEEECCC--hHHHHHHHHhhCCCCccc
Q psy10229 112 ARPVIILGPL--KDRINDDLISEFPEQFGS 139 (231)
Q Consensus 112 ~RpVVL~GPs--k~~l~~~Ll~~~P~~F~~ 139 (231)
+.+|+|+|.. .+|+...|+..+|+.+..
T Consensus 1 ~~~i~I~g~prSGTt~l~~lL~~h~~~~~~ 30 (267)
T PF00685_consen 1 PPPIFIVGAPRSGTTWLRELLNSHPDIFSF 30 (267)
T ss_dssp TTSEEEEESTTSSHHHHHHHHHHHHTTTET
T ss_pred CCCEEEECCCCCcHHHHHHHHHhCcccccc
Confidence 3678999988 889999999999987655
No 222
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=21.61 E-value=92 Score=25.28 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=16.1
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+|++ |++|+++|+..
T Consensus 3 i~vvG~~~vGKSsLi~~~~~~ 23 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHH 23 (193)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 7889999 99999999874
No 223
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=21.55 E-value=82 Score=24.82 Aligned_cols=20 Identities=40% Similarity=0.448 Sum_probs=17.2
Q ss_pred ceEEEECCC---hHHHHHHHHhh
Q psy10229 113 RPVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 113 RpVVL~GPs---k~~l~~~Ll~~ 132 (231)
.-|+|+||+ |++|.++|...
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcC
Confidence 448899999 99999999875
No 224
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=21.52 E-value=7e+02 Score=23.66 Aligned_cols=114 Identities=19% Similarity=0.226 Sum_probs=56.1
Q ss_pred EECCC---hHHHHHHHHhhCCCCc---ccccCCC-CCcchhH-HHHHHHHhccCceeEEeccCCccc-----hHHHHHHH
Q psy10229 117 ILGPL---KDRINDDLISEFPEQF---GSCVPPL-GKMYDRS-MKMEQEFGEFFTAVVQGDMPEDIY-----QKVKEVIQ 183 (231)
Q Consensus 117 L~GPs---k~~l~~~Ll~~~P~~F---~~~vp~T-G~dY~FV-e~fe~~i~~~Fd~iE~g~~~g~~Y-----~sV~~v~~ 183 (231)
++|-. +.+|.+-.-...|+.+ .+|+|.+ |.|..-| .++++.+.-..-.+...-|.|+-| .+++++++
T Consensus 70 VfGg~~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~~al~~ 149 (426)
T cd01972 70 VFGGEKKLEDTIKEAYSRYKPKAIFVATSCATGIIGDDVESVVEELEDEIGIPVVALHCEGFKGKHWRSGFDAAFHGILR 149 (426)
T ss_pred ecchHHHHHHHHHHHHHhCCCCEEEEECCChHHHhccCHHHHHHHHHHhhCCCEEEEeCCccCCccHhHHHHHHHHHHHH
Confidence 45655 3333333323356643 4444444 8887777 666665533221144555666333 55555555
Q ss_pred hcCCC----CCCCcEEEEEe----------cHHHHHHHH-HcCCCcEEEEEcCCCHHHHhhc
Q psy10229 184 EQSGP----SIWGKHCILDV----------SGNAIKRLQ-VASLYPVAIFIKPKSVESIICR 230 (231)
Q Consensus 184 ~~~~~----~~wGk~cILDv----------~~qgvk~Lr-~~~~~PivIFI~ppS~e~L~~~ 230 (231)
....+ ...+.+-||=. |...+++|- ..++.+..+|=--.++++|+.+
T Consensus 150 ~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~~ 211 (426)
T cd01972 150 HLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGCSVEELERA 211 (426)
T ss_pred HhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhc
Confidence 43322 12244554431 224444443 4566665444333777877754
No 225
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=21.26 E-value=3.3e+02 Score=23.51 Aligned_cols=72 Identities=11% Similarity=-0.010 Sum_probs=43.7
Q ss_pred hHHHHHHHHhc-cCceeEEeccCCccchHHHHHHHhcCCCCCCCcEEEEEecHHHHHHH----HHcCCCcEEEEEcCCCH
Q psy10229 150 RSMKMEQEFGE-FFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRL----QVASLYPVAIFIKPKSV 224 (231)
Q Consensus 150 FVe~fe~~i~~-~Fd~iE~g~~~g~~Y~sV~~v~~~~~~~~~wGk~cILDv~~qgvk~L----r~~~~~PivIFI~ppS~ 224 (231)
|...+-+..+. .. +|.|.+-| |+++.=.-.- +..|++.-+|++++-++.. +.+++.-.+=++.-+..
T Consensus 36 lL~~l~~~~~~k~v--LEIGt~~G--ySal~la~~l----~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~ 107 (205)
T PF01596_consen 36 LLQMLVRLTRPKRV--LEIGTFTG--YSALWLAEAL----PEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDAL 107 (205)
T ss_dssp HHHHHHHHHT-SEE--EEESTTTS--HHHHHHHHTS----TTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HH
T ss_pred HHHHHHHhcCCceE--EEeccccc--cHHHHHHHhh----cccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccH
Confidence 33444455555 67 99999987 6555432210 1239999999999766655 45666555555666666
Q ss_pred HHHhh
Q psy10229 225 ESIIC 229 (231)
Q Consensus 225 e~L~~ 229 (231)
+.|.+
T Consensus 108 ~~l~~ 112 (205)
T PF01596_consen 108 EVLPE 112 (205)
T ss_dssp HHHHH
T ss_pred hhHHH
Confidence 65554
No 226
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=21.22 E-value=5.9e+02 Score=23.10 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=19.4
Q ss_pred CCCceEEEECCC---hHHHHHHHHhhC
Q psy10229 110 DYARPVIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 110 ~~~RpVVL~GPs---k~~l~~~Ll~~~ 133 (231)
.....|+|+|+. |++|-+.|.+..
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999987 999999987754
No 227
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=21.03 E-value=1.1e+02 Score=26.64 Aligned_cols=91 Identities=11% Similarity=0.076 Sum_probs=46.4
Q ss_pred EEEECCC---hHHHHHHHHhhCCCCcccccCCCCCcchhH---HHHHHHHhccCceeEEeccCCc--cc-hHHHHHHHhc
Q psy10229 115 VIILGPL---KDRINDDLISEFPEQFGSCVPPLGKMYDRS---MKMEQEFGEFFTAVVQGDMPED--IY-QKVKEVIQEQ 185 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~P~~F~~~vp~TG~dY~FV---e~fe~~i~~~Fd~iE~g~~~g~--~Y-~sV~~v~~~~ 185 (231)
|.|+||+ ++|+..+|.+.+ ++..-.+| +.|- .+|.-.+. +| -++++-+-. .+ +.-+..+.+
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~----gl~~vsaG--~iFR~~A~e~gmsl~-ef--~~~AE~~p~iD~~iD~rq~e~a~- 72 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHL----GLKLVSAG--TIFREMARERGMSLE-EF--SRYAEEDPEIDKEIDRRQKELAK- 72 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHh----CCceeecc--HHHHHHHHHcCCCHH-HH--HHHHhcCchhhHHHHHHHHHHHH-
Confidence 6789998 888888887653 33322223 2232 22222222 23 233332211 11 333333333
Q ss_pred CCCCCCCcEEEEEecHHHHHHHHHcCCCcEEEEEcCCCH
Q psy10229 186 SGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSV 224 (231)
Q Consensus 186 ~~~~~wGk~cILDv~~qgvk~Lr~~~~~PivIFI~ppS~ 224 (231)
...|||+=-+.|.-.- ....+-||+.+|=.
T Consensus 73 ------~~nvVlegrLA~Wi~k---~~adlkI~L~Apl~ 102 (179)
T COG1102 73 ------EGNVVLEGRLAGWIVR---EYADLKIWLKAPLE 102 (179)
T ss_pred ------cCCeEEhhhhHHHHhc---cccceEEEEeCcHH
Confidence 4668888777665433 44566688888743
No 228
>PRK05480 uridine/cytidine kinase; Provisional
Probab=20.98 E-value=1.2e+02 Score=25.31 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=19.5
Q ss_pred CCceEEEECCC---hHHHHHHHHhhCC
Q psy10229 111 YARPVIILGPL---KDRINDDLISEFP 134 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~~P 134 (231)
.+..|.|+||+ |+||.+.|....+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45567889999 9999999988763
No 229
>KOG1970|consensus
Probab=20.95 E-value=1.7e+02 Score=30.02 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=19.1
Q ss_pred CCceEEEECCC---hHHHHHHHHhhC
Q psy10229 111 YARPVIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 111 ~~RpVVL~GPs---k~~l~~~Ll~~~ 133 (231)
..|.+.|+||+ |+|.++-|.+++
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhh
Confidence 55789999999 899888887763
No 230
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=20.84 E-value=92 Score=24.43 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=16.7
Q ss_pred CceEEEECCC---hHHHHHHHHh
Q psy10229 112 ARPVIILGPL---KDRINDDLIS 131 (231)
Q Consensus 112 ~RpVVL~GPs---k~~l~~~Ll~ 131 (231)
.+=|+|+|++ |+++.++|+.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhh
Confidence 3457889999 9999999975
No 231
>COG1550 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.64 E-value=75 Score=24.87 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=25.7
Q ss_pred EEEECCC----hHHHHHHHHhhCCCCcccccCCCC
Q psy10229 115 VIILGPL----KDRINDDLISEFPEQFGSCVPPLG 145 (231)
Q Consensus 115 VVL~GPs----k~~l~~~Ll~~~P~~F~~~vp~TG 145 (231)
+.+.+++ |+.|.+.++.+.-.+|..+++.||
T Consensus 10 l~~~~v~sLKeKRavlr~iv~rLk~KFnvSvaE~~ 44 (95)
T COG1550 10 LRLYDVRSLKEKRAVLRPIVTRLKNKFNVSVAETG 44 (95)
T ss_pred EEecccccHHHHHHHHHHHHHHHHHhcceeeeecC
Confidence 4456666 889999999988889999999994
No 232
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=20.63 E-value=91 Score=24.80 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=15.2
Q ss_pred EEEECCC---hHHHHHHHHh
Q psy10229 115 VIILGPL---KDRINDDLIS 131 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~ 131 (231)
|+|+|++ |++|.++|..
T Consensus 7 i~ivG~~~vGKTsli~~~~~ 26 (180)
T cd04127 7 FLALGDSGVGKTSFLYQYTD 26 (180)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 6889999 9999999976
No 233
>PRK14526 adenylate kinase; Provisional
Probab=20.47 E-value=5.5e+02 Score=22.12 Aligned_cols=19 Identities=37% Similarity=0.597 Sum_probs=16.1
Q ss_pred EEEECCC---hHHHHHHHHhhC
Q psy10229 115 VIILGPL---KDRINDDLISEF 133 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~ 133 (231)
|+|+||. |+|+.+.|.+.+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7789998 999999888764
No 234
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=20.46 E-value=95 Score=24.69 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=16.0
Q ss_pred eEEEECCC---hHHHHHHHHhh
Q psy10229 114 PVIILGPL---KDRINDDLISE 132 (231)
Q Consensus 114 pVVL~GPs---k~~l~~~Ll~~ 132 (231)
=|+++||+ |++|+++|+..
T Consensus 4 ki~vvG~~~vGKTsli~~~~~~ 25 (170)
T cd04115 4 KIIVIGDSNVGKTCLTYRFCAG 25 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 37889999 99999999763
No 235
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=20.30 E-value=81 Score=22.69 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=24.0
Q ss_pred ceEEEECCChHHHHHHHHhhCCCCccccc
Q psy10229 113 RPVIILGPLKDRINDDLISEFPEQFGSCV 141 (231)
Q Consensus 113 RpVVL~GPsk~~l~~~Ll~~~P~~F~~~v 141 (231)
-.|||+-|.++.|.++|--.-|.+|+..|
T Consensus 32 G~viI~dPe~S~IAk~l~i~~pG~YAlkV 60 (61)
T PRK08351 32 DLVIIIDVENSRIAKKLGAKVPGKYAIRV 60 (61)
T ss_pred cEEEEeCCcHhHHHHHhCCCCCCeEEEEe
Confidence 36788899999999999778899887654
No 236
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=20.06 E-value=4.1e+02 Score=26.28 Aligned_cols=114 Identities=14% Similarity=0.104 Sum_probs=64.8
Q ss_pred EEEECCC---hHHHHHHHHhhCCCCcc---cccCCC-CCcchhH-HHHHHHHhc--cCceeEEeccCCccc----hHHHH
Q psy10229 115 VIILGPL---KDRINDDLISEFPEQFG---SCVPPL-GKMYDRS-MKMEQEFGE--FFTAVVQGDMPEDIY----QKVKE 180 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~~P~~F~---~~vp~T-G~dY~FV-e~fe~~i~~--~Fd~iE~g~~~g~~Y----~sV~~ 180 (231)
||+.|-. ++.|.+..-...|+.+. .|+|.+ |.|..=+ .+++....- -+ ++...|.|+.| .+++.
T Consensus 64 vv~~Gg~~kL~~~I~~~~~~~~P~~I~V~tTC~~eiIGDDi~~v~~~~~~~~~~pVi~--v~t~~f~g~~~~g~~~~l~~ 141 (513)
T CHL00076 64 VLARGSQEKVVDNITRKDKEERPDLIVLTPTCTSSILQEDLQNFVDRASIESDSDVIL--ADVNHYRVNELQAADRTLEQ 141 (513)
T ss_pred hhccchHHHHHHHHHHHHHhcCCCEEEECCCCchhhhhcCHHHHHHHhhcccCCCEEE--eCCCCCcccHHHHHHHHHHH
Confidence 3344543 56666655555687643 334444 8887777 666543332 33 56666777665 35666
Q ss_pred HHHhcCC-----------CCCCCcEEEE-----E----ecHHHHHHHHH-cCCCcEEEEEcCCCHHHHhhc
Q psy10229 181 VIQEQSG-----------PSIWGKHCIL-----D----VSGNAIKRLQV-ASLYPVAIFIKPKSVESIICR 230 (231)
Q Consensus 181 v~~~~~~-----------~~~wGk~cIL-----D----v~~qgvk~Lr~-~~~~PivIFI~ppS~e~L~~~ 230 (231)
++++... +...+++-|| + =|...+++|-. .++.+.++|=.--++++|+.+
T Consensus 142 lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~~ 212 (513)
T CHL00076 142 IVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKNL 212 (513)
T ss_pred HHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHhc
Confidence 6643211 1234677777 2 24455655544 567777677666788888764
No 237
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=20.06 E-value=1e+02 Score=23.78 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=15.7
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+|+|+. |++|.++++..
T Consensus 5 i~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 5 LVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred EEEECCCCCcHHHHHHHHHhC
Confidence 6789999 99999999864
No 238
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=20.04 E-value=1.1e+02 Score=23.73 Aligned_cols=18 Identities=11% Similarity=0.351 Sum_probs=15.8
Q ss_pred EEEECCC---hHHHHHHHHhh
Q psy10229 115 VIILGPL---KDRINDDLISE 132 (231)
Q Consensus 115 VVL~GPs---k~~l~~~Ll~~ 132 (231)
|+++|+. |+++.++|...
T Consensus 3 i~v~G~~~~GKSsli~~l~~~ 23 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 6789999 99999999864
Done!