RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10229
(231 letters)
>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase.
Length = 183
Score = 83.2 bits (206), Expect = 6e-20
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 35/140 (25%)
Query: 111 YARPVIILGPL---KDRINDDLISEFPEQFGSCVP----------PLGKMY-----DRSM 152
RP+++ GP K I L+ E+PE+FG V GK Y +
Sbjct: 1 QRRPIVLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEME 60
Query: 153 KMEQ-----EFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRL 207
E+ EF G+ + ++++ + GK CILDV +K+L
Sbjct: 61 NDISANEFLEYAEF-----NGNYYGTSKEAIEQIAES-------GKICILDVDIQGVKQL 108
Query: 208 QVASLYPVAIFIKPKSVESI 227
+ A L P+++FIKP S++ +
Sbjct: 109 RKAELSPISVFIKPPSLKVL 128
Score = 38.1 bits (89), Expect = 0.001
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 146 KMYDRSMKMEQEFGEF--FTAVVQGDMPEDIYQKVKEVIQEQ 185
K+ R EQEF + F ++ D ++ Y+K+KE+++ +
Sbjct: 142 KINKRMEAAEQEFQHYALFDYIIVNDDLDEAYKKLKEILEAE 183
>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues. Active enzymes
catalyze ATP-dependent phosphorylation of GMP to GDP.
Structure resembles that of adenylate kinase. So-called
membrane-associated guanylate kinase homologues (MAGUKs)
do not possess guanylate kinase activities; instead at
least some possess protein-binding functions.
Length = 174
Score = 67.7 bits (166), Expect = 4e-14
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 119 GPLKDRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQEFGEFFTAVVQGDMPEDI---- 174
G K + +LI E P+ F V R + + G + V + + +DI
Sbjct: 2 GVGKGTLLAELIQEIPDAFERVVSHT----TRPPRPGEVNGVDYHFVSKEEFEDDIKSGL 57
Query: 175 -----------YQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPKS 223
Y KE I++ + GKHC+LD+ +K+L+ A LYP+ IFI P S
Sbjct: 58 FLEWGEYEGNYYGTSKETIRQVAEK---GKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPS 114
Query: 224 VESIICRR 231
E + R
Sbjct: 115 SEELERRL 122
Score = 29.2 bits (66), Expect = 1.2
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 149 DRSMKMEQEFGE--FFTAVVQGDMPEDIYQKVKEVIQEQ 185
R ++E E F V+ D ED Y+++KE+++ +
Sbjct: 135 KRLAAAQKEAQEYHLFDYVIVNDDLEDAYEELKEILEAE 173
>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase.
Length = 398
Score = 41.4 bits (97), Expect = 2e-04
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 31/136 (22%)
Query: 113 RPVIILGPL---KDRINDDLISEFPEQFGSCVP-----PLGKMYD--------RSMKMEQ 156
+P++I GP K + L+ EFP FG V P D RS ME+
Sbjct: 136 KPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERS-VMEK 194
Query: 157 E-----FGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVAS 211
E F EF A V G++ + V+ V GK CILD+ + ++ +S
Sbjct: 195 EIKDGKFLEF--ASVHGNLYGTSIEAVEVVTDS-------GKRCILDIDVQGARSVRASS 245
Query: 212 LYPVAIFIKPKSVESI 227
L + IFI P S+E +
Sbjct: 246 LEAIFIFICPPSMEEL 261
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP kinase.
This enzyme transfers a phosphate from ATP to GMP,
yielding ADP and GDP [Purines, pyrimidines, nucleosides,
and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 31.7 bits (73), Expect = 0.16
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 15/59 (25%)
Query: 176 QKVKEVIQEQSGPSIWGKHCIL--DVSGNAIKRLQVASLYP--VAIFIKPKSVESIICR 230
V+E + GK +L DV G QV +P V+IFI P S+E + R
Sbjct: 81 SPVEEALAA-------GKDVLLEIDVQG----ARQVKKKFPDAVSIFILPPSLEELERR 128
>gnl|CDD|237405 PRK13508, PRK13508, tagatose-6-phosphate kinase; Provisional.
Length = 309
Score = 32.0 bits (73), Expect = 0.23
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 170 MPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKP 221
+P D Y ++ E+ + GK +LD SG A++ + + P IKP
Sbjct: 140 LPVDYYAQLIELANQA------GKPVVLDCSGAALQAVLESPYKPTV--IKP 183
>gnl|CDD|212137 cd11530, NTP-PPase_DR2231_like, Nucleoside Triphosphate
Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found
in Deinococcus radiodurans DR2231 protein and its
bacterial homologs. This family includes a MazG-like
NTP-PPase from Deinococcus radiodurans (DR2231), a
putative NTP-PPase YP_001813558.1 from Exiguobacterium
sibiricum and their bacterial homologs. DR2231 shows
significant structural resemblance to MazG proteins, but
is functionally related to the dimeric dUTPases. It can
hydrolyze dUTP into dUMP. DR2231-like proteins contain a
well conserved divalent ion binding motif,
EXXEX(12-28)EXXD, which is the identity signature for
the all-alpha-helical NTP-PPase superfamily. Unlike
normal dimeric dUTPase-like proteins with a central
four-helix bundle forming the active site,
YP_001813558.1 displays a very unusual interlaced
segment-swapped dimer. It potentially prefers to
hydrolyze dCTPs or its derivatives. YP_001813558.1-like
proteins contain a variant divalent ion binding motif,
EXXEX(12-28)AXXD.
Length = 88
Score = 29.9 bits (68), Expect = 0.25
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 128 DLISEFPEQFGSCVPPLGKMYDRSMKMEQ-----EFGEFFTAVVQGDMPE 172
+ EF FG V + D + + Q E E A+ +GDM E
Sbjct: 2 ADVREFHRAFGLPVAEQPTLSDEDLALRQALLAEELAELAEALKKGDMVE 51
>gnl|CDD|224030 COG1105, FruK, Fructose-1-phosphate kinase and related
fructose-6-phosphate kinase (PfkB) [Carbohydrate
transport and metabolism].
Length = 310
Score = 30.6 bits (70), Expect = 0.60
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 10/52 (19%)
Query: 170 MPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKP 221
+P D Y ++ ++++Q G ILD SG A+ L P IKP
Sbjct: 143 VPPDAYAELIRILRQQ------GAKVILDTSGEAL--LAALEAKP--WLIKP 184
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 30.1 bits (69), Expect = 0.64
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Query: 192 GKHCIL--DVSGNAIKRLQVASLYP--VAIFIKPKSVE 225
GK +L D G A QV P V+IFI P S+E
Sbjct: 95 GKDVLLEIDWQG-A---RQVKKKMPDAVSIFILPPSLE 128
>gnl|CDD|223426 COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and
biogenesis].
Length = 361
Score = 29.2 bits (66), Expect = 1.8
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 19/80 (23%)
Query: 102 EPVTQMQIDYAR-PVIILGPLKDRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQEFGE 160
P+++ Q++YA V L PL D++ ++L E R E EF
Sbjct: 138 RPLSEAQLEYAAADVEYLLPLYDKLTEELARE----------------GRLEWAEDEF-R 180
Query: 161 FFTAVVQGDM-PEDIYQKVK 179
+ PED ++++K
Sbjct: 181 LLPTRRTYKVLPEDAWREIK 200
>gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine
amidotransferase/anthranilate phosphoribosyltransferase;
Provisional.
Length = 531
Score = 29.2 bits (65), Expect = 2.1
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 135 EQFGSCVPPLGKMYDRSMKMEQEFGEFFTAVVQGDM-PEDI 174
E + P L K+Y +QE + F+AVV+G++ PE +
Sbjct: 195 EPTNTLQPILEKLYQAQTLSQQESHQLFSAVVRGELKPEQL 235
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 27.9 bits (63), Expect = 2.4
Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 25/126 (19%)
Query: 114 PVIILGPL---KDRINDDLISEFPEQFGSCV-----PPL-----GKMY----DRSMKMEQ 156
+++ GP K + L+ EF FG V P G Y +
Sbjct: 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLI 60
Query: 157 EFGEFF-TAVVQGDMPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPV 215
E GEF A G+ Y K ++E GK IL++ ++++ + V
Sbjct: 61 ENGEFLEWAEFHGNY----YGTSKAAVEEALAE---GKIVILEIDVQGARQVKKSYPDAV 113
Query: 216 AIFIKP 221
+IFI P
Sbjct: 114 SIFILP 119
>gnl|CDD|221575 pfam12437, GSIII_N, Glutamine synthetase type III N terminal. This
domain family is found in bacteria and eukaryotes, and
is approximately 160 amino acids in length. The family
is found in association with pfam00120. This family is
the N terminal region of glutamine synthetase type III
which is one of the enzymes responsible for generation
of glutamine through conversion glutamate to glutamine
by the incorporation of ammonia (NH3).
Length = 162
Score = 27.8 bits (63), Expect = 3.1
Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 152 MKMEQEFGE--FFTAVVQGDMPEDIYQKVKEVIQE 184
K+ + FG F V++ +P+D+Y+ +K+ I++
Sbjct: 1 SKLSEIFGSNVFNDKVMKERLPKDVYKALKKTIEK 35
>gnl|CDD|235216 PRK04057, PRK04057, 30S ribosomal protein S3Ae; Validated.
Length = 203
Score = 27.9 bits (63), Expect = 3.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 155 EQEFGEFFTAVVQGDMPEDIYQKVKEV 181
E F EF +V G + +IY++ K++
Sbjct: 144 ELTFEEFVQEIVFGKLASEIYKEAKKI 170
>gnl|CDD|185039 PRK15081, PRK15081, glutathione ABC transporter permease GsiC;
Provisional.
Length = 306
Score = 28.1 bits (63), Expect = 3.9
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 154 MEQEFGEFFTAVVQGDMPEDIYQK--VKEVIQEQSGPSIW 191
+ +F + + +QGD + + V E I + P++W
Sbjct: 61 LPHQFWHYISNALQGDFGTSMVSRRPVSEEIASRFMPTLW 100
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 27.9 bits (63), Expect = 4.0
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 176 QKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYP--VAIFIKPKSVE 225
+ V++ + E GK ILD+ LQV P V+IFI P S+E
Sbjct: 84 EPVEQALAE-------GKDVILDIDVQGA--LQVKKKMPNAVSIFILPPSLE 126
>gnl|CDD|222797 PHA00452, PHA00452, T3/T7-like RNA polymerase.
Length = 807
Score = 28.1 bits (63), Expect = 5.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 163 TAVVQGDMPEDIYQKVKEVIQEQ 185
++ D P+DIY V EV+ E+
Sbjct: 524 VNLLPSDKPQDIYGIVAEVVNEK 546
>gnl|CDD|179197 PRK00982, acpP, acyl carrier protein; Provisional.
Length = 78
Score = 25.9 bits (58), Expect = 6.8
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 172 EDIYQKVKEVIQEQSG 187
+I++KVK++I EQ G
Sbjct: 2 SEIFEKVKKIIVEQLG 17
>gnl|CDD|221919 pfam13094, CENP-Q, CENP-A-nucleosome distal (CAD) centromere
subunit. CENP-Q is one of the components that assembles
onto the CENP-A-nucleosome distal (CAD) centromere. The
centromere, which is the basic element of chromosome
inheritance, is epigenetically determined in mammals.
CENP-A, the centromere-specific histone H3 variant,
assembles an array of nucleosomes and it is this that
seems to be the prime candidate for specifying
centromere identity. CENP-A nucleosomes directly recruit
a proximal CENP-A nucleosome associated complex (NAC)
comprised of CENP-M, CENP-N and CENP-T, CENP-U(50),
CENP-C and CENP-H. Assembly of the CENP-A NAC at
centromeres is dependent on CENP-M, CENP-N and CENP-T.
Additionally, there are seven other subunits which make
up the CENP-A-nucleosome distal (CAD) centromere,
CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R and
CENP-S, also assembling on the CENP-A NAC. Fta7 is the
equivalent component of the fission yeast Sim4 complex.
Length = 159
Score = 26.5 bits (59), Expect = 7.7
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 88 FSFPPGTEEGVLSYEPVTQMQ 108
PP T+E L Y+ + + +
Sbjct: 9 LPVPPPTKEDSLDYDQLLRRK 29
>gnl|CDD|222686 pfam14331, ImcF-related_N, ImcF-related N-terminal domain. This
domain is found in bacterial ImcF (intracellular
multiplication and human macrophage-killing) proteins.
It is found to the N-terminus of the ImcF-related
domain, pfam06761.
Length = 264
Score = 27.2 bits (61), Expect = 8.3
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 18/57 (31%)
Query: 129 LISEFPEQFGSCVPPLGKMYDRSMKMEQEFGE------------FFTAVVQGDMPED 173
I FP+QF PL + +E+ F +FT+ Q P D
Sbjct: 147 AIYAFPQQFAGLQEPLAQF------LEEVFAPNRYEETPLLRGVYFTSATQEGTPID 197
>gnl|CDD|163679 cd07941, DRE_TIM_LeuA3, Desulfobacterium autotrophicum LeuA3 and
related proteins, N-terminal catalytic TIM barrel
domain. Desulfobacterium autotrophicum LeuA3 is
sequence-similar to alpha-isopropylmalate synthase
(LeuA) but its exact function is unknown. Members of
this family have an N-terminal TIM barrel domain that
belongs to the DRE-TIM metallolyase superfamily.
DRE-TIM metallolyases include 2-isopropylmalate synthase
(IPMS), alpha-isopropylmalate synthase (LeuA),
3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate
synthase, citramalate synthase, 4-hydroxy-2-oxovalerate
aldolase, re-citrate synthase, transcarboxylase 5S,
pyruvate carboxylase, AksA, and FrbC. These members all
share a conserved triose-phosphate isomerase (TIM)
barrel domain consisting of a core beta(8)-alpha(8)
motif with the eight parallel beta strands forming an
enclosed barrel surrounded by eight alpha helices. The
domain has a catalytic center containing a divalent
cation-binding site formed by a cluster of invariant
residues that cap the core of the barrel. In addition,
the catalytic site includes three invariant residues -
an aspartate (D), an arginine (R), and a glutamate (E) -
which is the basis for the domain name "DRE-TIM".
Length = 273
Score = 27.0 bits (61), Expect = 8.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 168 GDMPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAI 204
G +P +I + VKEV + G + G H D SG A+
Sbjct: 176 GTLPHEIAEIVKEVRERLPGVPL-GIHAHND-SGLAV 210
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.424
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,861,811
Number of extensions: 1107032
Number of successful extensions: 918
Number of sequences better than 10.0: 1
Number of HSP's gapped: 913
Number of HSP's successfully gapped: 33
Length of query: 231
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 137
Effective length of database: 6,768,326
Effective search space: 927260662
Effective search space used: 927260662
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)