RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10229
(231 letters)
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 110 bits (277), Expect = 2e-29
Identities = 70/163 (42%), Positives = 96/163 (58%), Gaps = 31/163 (19%)
Query: 89 SFPPGTEEGVLSYEPVTQMQIDYARPVIILGPLKDRINDDLISEFPEQFGSCVPPLGKMY 148
S G E+ VLSYE VTQM++ YARP+IILGP KDR NDDL+SEFP++FGSCVP
Sbjct: 82 SGSQGREDSVLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVP----HT 137
Query: 149 DRSMK-MEQEFGEFFTAVVQGDMPEDIYQK-------------------VKEVIQEQSGP 188
R + E + ++ + M +DI V+EV ++
Sbjct: 138 TRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQ---- 193
Query: 189 SIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIICRR 231
GKHCILDVS NA++RLQ A L+P+AIFI+P+S+E+++
Sbjct: 194 ---GKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEIN 233
Score = 55.9 bits (135), Expect = 1e-09
Identities = 27/46 (58%), Positives = 36/46 (78%)
Query: 146 KMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIW 191
K +DR+ K+EQEF E F+A+V+GD E+IY KVK VI++ SGP IW
Sbjct: 243 KAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIW 288
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 110 bits (277), Expect = 2e-29
Identities = 76/159 (47%), Positives = 96/159 (60%), Gaps = 23/159 (14%)
Query: 89 SFPPGTEEGVLSYEPVTQMQIDYARPVIILGPLKDRINDDLISEFPEQFGSCVP------ 142
+EE VLSYE V ++ I+Y RPVIILGPLKDRINDDLISE+P++FGSCVP
Sbjct: 77 DRSVKSEENVLSYEAVQRLSINYTRPVIILGPLKDRINDDLISEYPDKFGSCVPHTTRPK 136
Query: 143 ----PLGKMY-----DRSMKMEQEFGEFF-TAVVQGDMPEDIYQKVKEVIQEQSGPSIWG 192
G+ Y M+ + + F ++ V+EV ++ G
Sbjct: 137 REYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEK-------G 189
Query: 193 KHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESIICRR 231
KHCILDVSGNAIKRLQVA LYPVA+FIKPKSV+S++
Sbjct: 190 KHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMN 228
Score = 58.2 bits (141), Expect = 2e-10
Identities = 31/46 (67%), Positives = 38/46 (82%)
Query: 146 KMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIW 191
K Y+R++KMEQEFGE+FT VVQGD E+IY KVK +I QSGP+IW
Sbjct: 238 KTYERAIKMEQEFGEYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIW 283
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 107 bits (267), Expect = 6e-27
Identities = 71/189 (37%), Positives = 102/189 (53%), Gaps = 31/189 (16%)
Query: 63 RGKCKTRFFDRKNSYLPMNPGLNSIFSFPPGTEEGVLSYEPVTQMQIDYARPVIILGPLK 122
G ++ + + + S G E+ VLSYE VTQM++ YARP+IILGP K
Sbjct: 482 IGFIPSKRRVERREWSRLKAKDWGSSSGSQGREDSVLSYETVTQMEVHYARPIIILGPTK 541
Query: 123 DRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQEFG-EFFTAVVQGDMPEDIYQK---- 177
DR NDDL+SEFP++FGSCVP R + + G ++ + M +DI
Sbjct: 542 DRANDDLLSEFPDKFGSCVPH----TTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIE 597
Query: 178 ---------------VKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPK 222
V+EV ++ GKHCILDVS NA++RLQ A L+P+AIFI+P+
Sbjct: 598 AGQYNSHLYGTSVQSVREVAEQ-------GKHCILDVSANAVRRLQAAHLHPIAIFIRPR 650
Query: 223 SVESIICRR 231
S+E+++
Sbjct: 651 SLENVLEIN 659
Score = 62.6 bits (151), Expect = 1e-11
Identities = 27/46 (58%), Positives = 36/46 (78%)
Query: 146 KMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIW 191
K +DR+ K+EQEF E F+A+V+GD E+IY KVK VI++ SGP IW
Sbjct: 669 KAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIW 714
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 98.7 bits (245), Expect = 7e-25
Identities = 40/204 (19%), Positives = 67/204 (32%), Gaps = 33/204 (16%)
Query: 28 PMNPGLNSIFSFPPILEWHGRKKKMSRNNTAKITFRGKCKTRFFDRKNSYLPMNPGLNSI 87
P + S G S + A+ F R +K +
Sbjct: 67 PNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQRSREDLSAL- 125
Query: 88 FSFPPGTEEGVLSYEPVTQMQIDYARPVIILGPLKDRINDDLISEFPEQFGSCVPPLGKM 147
+ YE V + + RPV+ILGP+ D L +E P+QF
Sbjct: 126 -----TRQGRYPPYERVVLREASFKRPVVILGPVADIAMQKLTAEMPDQFEIAE------ 174
Query: 148 YDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRL 207
+ + V+ + ++ KH +LDV+ +AI+RL
Sbjct: 175 TVSRTDSPSKIIKL--------------DTVRVIAEK-------DKHALLDVTPSAIERL 213
Query: 208 QVASLYPVAIFIKPKSVESIICRR 231
YP+ +F P+S ++ R
Sbjct: 214 NYVQYYPIVVFFIPESRPALKALR 237
Score = 57.1 bits (137), Expect = 6e-10
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 146 KMYDRSMKMEQEFGEFFTAVVQ-GDMPEDIYQKVKEVIQEQSGPSIW 191
++Y ++ K+ + FTA + + YQ++K +I+EQ IW
Sbjct: 250 RLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPIW 296
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 85.4 bits (210), Expect = 2e-19
Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 31/189 (16%)
Query: 44 EWHGRKKKMSRNNTAKITFRGKCKTRFFDRKNSYLPMNPGLNSIFSFPPGTEEGVLSYEP 103
+ + + + + + ++N + +YE
Sbjct: 162 QLASVQYTLPKTAGGDRADFWRFRGLRSSKRNLRKSREDLSAQ------PVQTKFPAYER 215
Query: 104 VTQMQIDYARPVIILGPLKDRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQEFGEF-F 162
V + + RPV I GP+ D + L E P+ + +
Sbjct: 216 VVLREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKS-------EPRDAGTDQRSSGI 268
Query: 163 TAVVQGDMPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPK 222
+ +K++I + KH +LDV+ NA+ RL A YP+ +F+ P
Sbjct: 269 IRL----------HTIKQIIDQ-------DKHALLDVTPNAVDRLNYAQWYPIVVFLNPD 311
Query: 223 SVESIICRR 231
S + + R
Sbjct: 312 SKQGVKTMR 320
Score = 54.9 bits (131), Expect = 4e-09
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 146 KMYDRSMKMEQEFGEFFTAVVQG-DMPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAI 204
K+Y+RS K+ + FT + M + Y +KE IQ+Q +W D + +
Sbjct: 333 KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSEGKADGATSDD 392
Query: 205 KRLQ 208
L
Sbjct: 393 LDLH 396
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 84.1 bits (207), Expect = 3e-19
Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 29/186 (15%)
Query: 46 HGRKKKMSRNNTAKITFRGKCKTRFFDRKNSYLPMNPGLNSIFSFPPGTEEGVLSYEPVT 105
+ + + + + ++N + +YE V
Sbjct: 172 ASVQYTLPKTAGGDRADFWRFRGLRSSKRNLRKSREDLSAQ------PVQTKFPAYERVV 225
Query: 106 QMQIDYARPVIILGPLKDRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQEFGEFFTAV 165
+ + RPV I GP+ D + L E P+ + +
Sbjct: 226 LREAGFLRPVTIFGPIADVAREKLAREEPDIYQIAKS-------EPRDAGTDQRSSGIIR 278
Query: 166 VQGDMPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVE 225
+ +K++I + KH +LDV+ NA+ RL A YP+ +F+ P S +
Sbjct: 279 LHT---------IKQIIDQ-------DKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQ 322
Query: 226 SIICRR 231
+ R
Sbjct: 323 GVKTMR 328
Score = 57.9 bits (139), Expect = 4e-10
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 146 KMYDRSMKMEQEFGEFFTAVVQG-DMPEDIYQKVKEVIQEQSGPSIW 191
K+Y+RS K+ + FT + M + Y +KE IQ+Q +W
Sbjct: 341 KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVW 387
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 71.8 bits (177), Expect = 9e-16
Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 35/148 (23%)
Query: 101 YEPVTQMQIDYARPVIILGPL---KDRINDDLISEFPEQFGSCVP-----P-----LGKM 147
+ + ++++G + I + L+S+ PE+F VP P GK
Sbjct: 8 SSGRENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKE 67
Query: 148 Y---DRSMKMEQ--EFGEFF-TAVVQGDMPEDIY----QKVKEVIQEQSGPSIWGKHCIL 197
Y +M + EF QG+M + + V ++ ++ K IL
Sbjct: 68 YHFISTE-EMTRNISANEFLEFGSYQGNM----FGTKFETVHQIHKQ-------NKIAIL 115
Query: 198 DVSGNAIKRLQVASLYPVAIFIKPKSVE 225
D+ +K ++ A L P +FI P
Sbjct: 116 DIEPQTLKIVRTAELSPFIVFIAPTDQG 143
Score = 45.3 bits (108), Expect = 3e-06
Identities = 6/48 (12%), Positives = 20/48 (41%)
Query: 144 LGKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIW 191
L ++ S + ++ +F + + ++ +K++E + W
Sbjct: 149 LQQLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQW 196
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 67.9 bits (167), Expect = 2e-14
Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 39/141 (27%)
Query: 110 DYARPVIILGPL---KDRINDDLISEFPEQFGSCVP-----P-----LGKMY---DRSMK 153
+ +++LG + I + LI++ P++F +P P GK Y +
Sbjct: 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHD-Q 61
Query: 154 MEQ-----EFGEFFTAVVQGDMPEDIY----QKVKEVIQEQSGPSIWGKHCILDVSGNAI 204
M Q E+ E+ + M Y + ++++ ++ G ILDV A+
Sbjct: 62 MMQDISNNEYLEY--GSHEDAM----YGTKLETIRKIHEQ-------GLIAILDVEPQAL 108
Query: 205 KRLQVASLYPVAIFIKPKSVE 225
K L+ A P +FI ++
Sbjct: 109 KVLRTAEFAPFVVFIAAPTIT 129
Score = 36.7 bits (86), Expect = 0.002
Identities = 4/40 (10%), Positives = 20/40 (50%)
Query: 144 LGKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQ 183
L ++ S +++ + +F + + ++ + ++E ++
Sbjct: 138 LQRLQKESDILQRTYAHYFDLTIINNEIDETIRHLEEAVE 177
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 69.5 bits (169), Expect = 3e-14
Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 23/149 (15%)
Query: 92 PGTEEGVLSYEPVTQMQIDYARPVIILGP------LKDRINDDLISEFPEQFGSCVPPLG 145
E Y+ V RPV+++GP + D + L +F +
Sbjct: 127 FKKTEHTPPYDVVP-----SMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITR 181
Query: 146 KMYD-----RSMKMEQEFGEFFT-AVVQGDMPEDIYQKVKEVIQEQSGPSIWGKHCILDV 199
D RS+ + + + E Q E I E + + +LD
Sbjct: 182 VTADISLAKRSVLNNPSKHAIIERSNTRSSLAE--VQSEIERIFELART---LQLVVLDA 236
Query: 200 SG-NAIKRLQVASLYPVAIFIKPKSVESI 227
N +L SL P+ +++K S + +
Sbjct: 237 DTINHPAQLSKTSLAPIVVYVKISSPKVL 265
Score = 41.7 bits (97), Expect = 8e-05
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 144 LGKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQE---QSGPSIW 191
L + K+ Q E F ++ + ED + + + ++ + P
Sbjct: 280 LNVQMVAADKLAQCPPELFDVILDENQLEDACEHLADYLEAYWKATHPPSS 330
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 4e-06
Identities = 48/276 (17%), Positives = 88/276 (31%), Gaps = 86/276 (31%)
Query: 12 MGK--CKT-----RFFDRKNSYLPMNPG---LNSIFSFPPILEWH--GRKKKMSRNNTAK 59
MG KT ++R +++ G L+ + + P L H G K K R N +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 60 ITFRGKCKTRFFDRKNSYLPMNPGLNS-----IFSFPPGTEEGVLSYEPVTQ---MQIDY 111
+ F D K + +N F +G+LS TQ ++
Sbjct: 1691 MIFETIV-----DGKLKTEKIFKEINEHSTSYTFRSE----KGLLSATQFTQPALTLMEK 1741
Query: 112 ARPVIILGPLKDR--INDDLI----S--EF-----------PE----------QFGSCVP 142
A LK + I D S E+ E
Sbjct: 1742 A----AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAV 1797
Query: 143 PLGKMYDRSMKMEQEFGEFFTAVVQGDM----PEDIYQKVKEVIQEQSGPSIW------- 191
P ++ + M A+ G + ++ Q V E + +++G +
Sbjct: 1798 PRDELGRSNYGM--------IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Query: 192 GKHCILDVSGNAIKRLQVASLYPVAIFIKPKSVESI 227
+ + +G+ ++ L + V FIK + ++ I
Sbjct: 1850 NQQYV--AAGD-LRALDTVT--NVLNFIKLQKIDII 1880
Score = 41.2 bits (96), Expect = 2e-04
Identities = 48/216 (22%), Positives = 68/216 (31%), Gaps = 93/216 (43%)
Query: 21 DRKNSYLPMNPGL-----NSIFSF----PPI----LEWHGRKKKM-SRNNTAKITFRGKC 66
++ NS+LP + N + PP L RK K S + ++I F +
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER- 412
Query: 67 KTRFFDRKNSYLPMN-PGLNSIF-SFPPGTEEGVLSYEPVTQMQIDYARPVIILGPLKDR 124
K +F N +LP+ P F S L P D
Sbjct: 413 KLKF---SNRFLPVASP-----FHS----------HL----------------LVPASDL 438
Query: 125 INDDLISEFPEQFGSC---VPPLGKMYDRSMKMEQEFGEFFTA----VVQGDMPEDIYQK 177
IN DL+ F + +P +YD F V+ G + E I
Sbjct: 439 INKDLVKN-NVSFNAKDIQIP----VYD-----------TFDGSDLRVLSGSISERI--- 479
Query: 178 VKEVIQEQSGPSIWGK-------HCILD-----VSG 201
V +I+ P W H ILD SG
Sbjct: 480 VDCIIRL---PVKWETTTQFKATH-ILDFGPGGASG 511
Score = 33.5 bits (76), Expect = 0.065
Identities = 29/149 (19%), Positives = 47/149 (31%), Gaps = 46/149 (30%)
Query: 15 CKTRFFDRK----NSYLP---------MNPGLNSIFS--FPPILEWHGRKKKMS------ 53
+ F +RK N +LP + P + I + ++ + ++
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 54 ----RNNTAKITFRG-KCKTRFFDRKNSYLPMN------PGLNSIFSFPPGTEEGVLSYE 102
R + I+ R C R LP+ I F PG G+
Sbjct: 465 GSDLRVLSGSISERIVDCIIR--------LPVKWETTTQFKATHILDFGPGGASGL---G 513
Query: 103 PVTQMQID--YARPVIILGPLKDRINDDL 129
+T D R VI+ G L +DD
Sbjct: 514 VLTHRNKDGTGVR-VIVAGTLDINPDDDY 541
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase
(EC 2.7.1.56), struct genomics, joint center for
structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga
maritima} SCOP: c.72.1.1
Length = 331
Score = 34.5 bits (80), Expect = 0.021
Identities = 8/52 (15%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 170 MPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKP 221
+ E I ++ + +E+ G ++ + ++R+ +P +KP
Sbjct: 160 VNEGICNELVRLARER------GVFVFVEQTPRLLERIYEGPEFP--NVVKP 203
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.027
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 10/31 (32%)
Query: 202 NAIKRLQVASL--Y-----PVAIFIKPKSVE 225
A+K+LQ ASL Y P A+ IK ++E
Sbjct: 20 QALKKLQ-ASLKLYADDSAP-ALAIK-ATME 47
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI,
protein structure initiative YORK SGX research center
for structural genomics; HET: ATP; 1.90A {Enterococcus
faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Length = 323
Score = 33.7 bits (78), Expect = 0.034
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 170 MPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKP 221
+P D YQ++ + Q +LD SG++++++ P IKP
Sbjct: 143 LPSDFYQELVQKAHAQ------EVKVLLDTSGDSLRQVLQGPWKP--YLIKP 186
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational
changes, transferase, lactose metabolism; HET: MSE ANP
TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Length = 330
Score = 33.7 bits (78), Expect = 0.040
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 170 MPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKP 221
+ +D Y ++ E Q + G ILD SG ++ + P IKP
Sbjct: 161 LNQDYYAQIIERCQNK------GVPVILDCSGATLQTVLENPYKP--TVIKP 204
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2,
glycolysis, transferase; HET: ATP; 1.98A {Escherichia
coli} PDB: 3n1c_A*
Length = 309
Score = 32.5 bits (75), Expect = 0.081
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 22/78 (28%)
Query: 156 QEFGEFFTAVVQGD-----------MPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAI 204
++ E + G + + ++ Q+Q G CI+D SG A+
Sbjct: 119 RQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQKQ------GIRCIVDSSGEAL 172
Query: 205 KR-LQVASLYPVAIFIKP 221
L + ++ +KP
Sbjct: 173 SAALAIGNIE----LVKP 186
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 31.6 bits (71), Expect = 0.19
Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 11/106 (10%)
Query: 85 NSIFSFPPGTEEGVLSYEPVTQMQIDYARPVIILGP--LKDRINDDLISEFPEQFGSCVP 142
N +F G +G L + + + L + I ++++ P
Sbjct: 157 NRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEP 216
Query: 143 PLGKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGP 188
K + F E+ + D E +Y+KV I+
Sbjct: 217 E---------KFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTM 253
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase,
tRNA processing, hydrolase,translation; 1.60A
{Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Length = 375
Score = 30.8 bits (70), Expect = 0.32
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 17/78 (21%)
Query: 103 PVTQMQIDYARP-VIILGPLKDRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQEFGEF 161
P+T+ Q +YA V L P+ ++ + + E
Sbjct: 143 PLTERQCEYAAADVWYLLPITAKLMVETEAS----------------GWLPAALDECRLM 186
Query: 162 FTAVVQGDMPEDIYQKVK 179
+ PED ++ +
Sbjct: 187 QMRRQEVVAPEDAWRDIT 204
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 30.8 bits (69), Expect = 0.34
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 11/102 (10%)
Query: 85 NSIFSFPPGTEEGVLSYEPVTQMQIDYARPV--IILGPLKDRINDDLISEFPEQFGSCVP 142
N +F G +G LS T+ Y + I ++++
Sbjct: 157 NKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDE 216
Query: 143 PLGKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQE 184
+++F ++ V DM E++Y+K I+E
Sbjct: 217 D---------AYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRE 249
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI,
protein structure initiative; 2.10A {Bacillus
halodurans} SCOP: c.72.1.1
Length = 306
Score = 30.6 bits (70), Expect = 0.35
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 21/77 (27%)
Query: 156 QEFGEFFTAVVQGD-----------MPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAI 204
Q E T + +GD MP+ IY+ + ++ +E+ G +D SG A
Sbjct: 114 QALLEQLTELEKGDVLVLAGSVPQAMPQTIYRSMTQIAKER------GAFVAVDTSGEA- 166
Query: 205 KRLQVASLYPVAIFIKP 221
L + IKP
Sbjct: 167 --LHEVLAAKPSF-IKP 180
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 30.4 bits (68), Expect = 0.37
Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 11/102 (10%)
Query: 85 NSIFSFPPGTEEGVLSYEPVTQMQIDYARPVIILGP--LKDRINDDLISEFPEQFGSCVP 142
+F G +G L + + P L+ I +S++ E+
Sbjct: 157 ARVFGALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEEL----- 211
Query: 143 PLGKMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQE 184
D + + F + + D EDIY E I+
Sbjct: 212 ----ADDDEERFSELFKGYLADDIDADSLEDIYTSAHEAIRA 249
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION,
PSI-II, NYSGXRC, kinase, structural genomics, structure
initiative; HET: ATP; 1.60A {Listeria innocua} PDB:
3hic_A* 3jul_A* 3q1y_A
Length = 320
Score = 30.6 bits (70), Expect = 0.42
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 10/52 (19%)
Query: 170 MPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKP 221
++++ ++ G D SG + + FIKP
Sbjct: 147 YTLSDFKELLRTVKAT------GAFLGCDNSGEYLNLAVEMGVD----FIKP 188
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 30.1 bits (69), Expect = 0.42
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 16/53 (30%)
Query: 178 VKEVIQEQSGPSIWGKHCIL--DVSGNAIKRLQVASLYP---VAIFIKPKSVE 225
VK+V + GK CIL D+ G V ++ +FI P SVE
Sbjct: 85 VKQVSKS-------GKTCILDIDMQGV----KSVKAIPELNARFLFIAPPSVE 126
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR
{Pseudomonas aeruginosa}
Length = 103
Score = 28.6 bits (63), Expect = 0.68
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 167 QGDMPEDIYQKVKEVIQEQSG 187
QG MP D+ + V+ SG
Sbjct: 20 QGHMPNDMEDHLLTVLSVASG 40
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase;
2.3A {Staphylococcus aureus}
Length = 306
Score = 29.4 bits (67), Expect = 0.86
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 170 MPEDIYQKVKEVIQEQSGPSIWGKHCILDVSGNAIKRLQVASLYPVAIFIKP 221
+P D Y ++ ++ + G ++D + V +P +FIKP
Sbjct: 139 IPSDAYAQIAQITAQT------GAKLVVDAEKELAES--VLPYHP--LFIKP 180
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 28.7 bits (65), Expect = 1.4
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 192 GKHCIL--DVSGNAIKRLQVASLYP--VAIFIKPKSVE 225
G ++ D++G + P V +F+ P S +
Sbjct: 112 GVPVLIEVDLAGA----RAIKKTMPEAVTVFLAPPSWQ 145
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 28.3 bits (64), Expect = 1.5
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 9/50 (18%)
Query: 178 VKEVIQEQSGPSIWGKHCIL--DVSGNAIKRLQVASLYPVAIFIKPKSVE 225
+ ++ K C+ +++G + + IFIKP S +
Sbjct: 107 YDKAKEQ-------NKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTD 149
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione
biosynthesis, beta-hairpin, R regulation; HET: GLU;
2.09A {Brassica juncea} PDB: 2gwc_A*
Length = 449
Score = 28.9 bits (63), Expect = 1.8
Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 3/113 (2%)
Query: 45 WHGRKKKMSRNNTAKITFRGKCKTRFFDRKNSYLPMNPGLNSIFSFPP---GTEEGVLSY 101
M R T ++ + + + L + P ++F+ P G G LS
Sbjct: 167 GSLGLDMMLRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFLSM 226
Query: 102 EPVTQMQIDYARPVIILGPLKDRINDDLISEFPEQFGSCVPPLGKMYDRSMKM 154
D R ++ D + ++ Y M
Sbjct: 227 RSHIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFAYRNGKYVDCTGM 279
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 27.8 bits (63), Expect = 2.0
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 15/54 (27%)
Query: 176 QKVKEVIQEQSGPSIWGKHCIL--DVSGNAIKRLQVASLYP--VAIFIKPKSVE 225
+ V+ V + C+L D+ G + + IF++P S++
Sbjct: 86 EAVRAVQAM-------NRICVLDVDLQG-V---RSIKKTDLCPIYIFVQPPSLD 128
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 27.8 bits (63), Expect = 2.5
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 15/52 (28%)
Query: 178 VKEVIQEQSGPSIWGKHCIL--DVSGNAIKRLQVASLYP--VAIFIKPKSVE 225
V+E + G L +V G A +QV P + IF+ P +
Sbjct: 92 VEEKLAA-------GVDIFLEIEVQG-A---MQVRKAMPEGIFIFLTPPDLS 132
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 27.8 bits (63), Expect = 2.6
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 15/52 (28%)
Query: 178 VKEVIQEQSGPSIWGKHCIL--DVSGNAIKRLQVASLYP--VAIFIKPKSVE 225
VK+ + E G L +V G A QV +P + IF+ P S+E
Sbjct: 90 VKDTMDE-------GHDVFLEIEVEG-A---KQVRKKFPDALFIFLAPPSLE 130
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 27.5 bits (62), Expect = 3.0
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 9/50 (18%)
Query: 178 VKEVIQEQSGPSIWGKHCIL--DVSGNAIKRLQVASLYPVAIFIKPKSVE 225
+ E GK C+ +++G + + IF+KP S++
Sbjct: 96 YDLAVGE-------GKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSID 138
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG;
2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB:
1hkg_A
Length = 457
Score = 27.4 bits (60), Expect = 4.0
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 74 KNSYLPMNPGLNSIFSFPPGTEEGVL 99
+ +PM PG + G + G
Sbjct: 40 SAASIPMVPGW--VLKQVSGAQAGSF 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.424
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,537,692
Number of extensions: 202581
Number of successful extensions: 523
Number of sequences better than 10.0: 1
Number of HSP's gapped: 509
Number of HSP's successfully gapped: 50
Length of query: 231
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 141
Effective length of database: 4,188,903
Effective search space: 590635323
Effective search space used: 590635323
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)