RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10229
         (231 letters)



>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 199

 Score = 57.5 bits (138), Expect = 6e-11
 Identities = 30/39 (76%), Positives = 36/39 (92%)

Query: 104 VTQMQIDYARPVIILGPLKDRINDDLISEFPEQFGSCVP 142
           VTQM++ YARP+IILGP KDR NDDL+SEFP++FGSCVP
Sbjct: 1   VTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVP 39



 Score = 46.4 bits (109), Expect = 6e-07
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 146 KMYDRSMKMEQEFGEFFTAVVQGDMPEDIYQKVKEVIQEQSGPSIW 191
           K +DR+ K+EQEF E F+A+V+GD  E+IY KVK VI++ SGP IW
Sbjct: 147 KAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIW 192


>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 190

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 19/128 (14%)

Query: 113 RPVIILGPL---KDRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQEFGEFFTAVVQGD 169
           RPV++ GP    K  +   L  E    FG  V        R+ +  +E G+ +  V +  
Sbjct: 1   RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVS----HTTRNPRPGEEDGKDYYFVTREM 56

Query: 170 MPEDIYQKVKEVIQEQSG------------PSIWGKHCILDVSGNAIKRLQVASLYPVAI 217
           M  DI         E SG                 + C+LDV    ++ ++   L P+ I
Sbjct: 57  MQRDIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYI 116

Query: 218 FIKPKSVE 225
           F++P S++
Sbjct: 117 FVQPPSLD 124


>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 186

 Score = 32.2 bits (72), Expect = 0.028
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 112 ARPVIILGPL---KDRINDDLISEFPEQFGSCVPPLGKMYDRSMKMEQEFGEFFTAVVQG 168
           +RP++I GP    K  +   L +E+P+ FG  V        R+ +  +  G+ +  V   
Sbjct: 1   SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVS----STTRTPRAGEVNGKDYNFVSVD 56

Query: 169 DMPEDIYQKVKEVIQEQSGPSIWGKHC 195
           +    I         + SG        
Sbjct: 57  EFKSMIKNNEFIEWAQFSGNYYGSTVA 83


>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 292

 Score = 27.1 bits (59), Expect = 1.9
 Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 102 EPVTQMQIDYAR-PVIILGPLKDRINDDLISE 132
            P+++     AR     L  + D++ + LI  
Sbjct: 224 RPLSKPMTAAARADTHFLLNIYDQLRNKLIES 255


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 889,379
Number of extensions: 42081
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 7
Length of query: 231
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,281,736
Effective search space: 190978664
Effective search space used: 190978664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)