Query psy10231
Match_columns 607
No_of_seqs 398 out of 1469
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 21:15:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 5.9E-45 2E-49 389.8 34.2 428 34-578 22-483 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 7.1E-34 2.4E-38 300.2 20.5 379 34-557 38-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 1.3E-31 4.3E-36 281.9 28.9 354 34-552 36-427 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 2.2E-28 7.4E-33 261.3 22.8 413 56-563 48-477 (491)
5 2gfp_A EMRD, multidrug resista 100.0 5.3E-29 1.8E-33 256.4 13.6 344 34-542 10-361 (375)
6 2cfq_A Lactose permease; trans 99.9 1.6E-26 5.3E-31 241.4 15.1 366 41-564 24-406 (417)
7 2xut_A Proton/peptide symporte 99.9 2.2E-25 7.5E-30 240.1 20.0 146 45-193 34-195 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.3 1.7E-11 5.8E-16 128.5 13.1 181 373-563 30-212 (451)
9 3o7q_A L-fucose-proton symport 99.3 3.2E-10 1.1E-14 118.2 21.8 168 378-555 33-227 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.2 5.3E-10 1.8E-14 118.6 20.3 164 383-559 25-198 (491)
11 2gfp_A EMRD, multidrug resista 99.2 1.1E-10 3.9E-15 119.1 14.1 165 386-563 15-180 (375)
12 2xut_A Proton/peptide symporte 99.1 2.5E-09 8.7E-14 114.3 20.0 162 386-559 27-200 (524)
13 2cfq_A Lactose permease; trans 99.0 3.8E-10 1.3E-14 117.1 9.4 142 60-201 257-405 (417)
14 4gc0_A D-xylose-proton symport 98.8 5.4E-08 1.8E-12 103.0 13.7 153 409-562 59-224 (491)
15 2g9p_A Antimicrobial peptide l 30.2 25 0.00084 18.5 1.3 14 81-94 2-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=5.9e-45 Score=389.85 Aligned_cols=428 Identities=25% Similarity=0.392 Sum_probs=328.0
Q ss_pred hhccccccccccccccccCCCccc--------ccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHH
Q psy10231 34 HCNNLTHAIPSILIPQLQKPSSII--------SISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIG 105 (607)
Q Consensus 34 ~~~~~~~~~~~~~~p~l~~~~~~~--------~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~ 105 (607)
+++|+|.+..+..+|.+++ ++ +.++.+.|++.+++.+|..+|++++|+++||+|||++++++.+++.++
T Consensus 22 ~~~Gyd~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~ 98 (491)
T 4gc0_A 22 LLFGYDTAVISGTVESLNT---VFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS 98 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHH---HHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4578888888888888876 44 334556899999999999999999999999999999999999999999
Q ss_pred HHHHH------------------hccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHH
Q psy10231 106 WTIIT------------------VSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIV 166 (607)
Q Consensus 106 ~~~~a------------------~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig 166 (607)
+++++ +++|+++++++|+++|+|.|+..+ +.++++|+.|+++|++..++.+.+..+|.+++
T Consensus 99 ~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~ 178 (491)
T 4gc0_A 99 GVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLV 178 (491)
T ss_dssp HHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhh
Confidence 99999 478999999999999999999999 99999999999999999999999999999988
Q ss_pred HHHhhhhhHHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHH
Q psy10231 167 YSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACY 246 (607)
Q Consensus 167 ~~l~~~l~Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 246 (607)
+.++.... . ..+..
T Consensus 179 ~~~~~~~~----------------~---~~~~~----------------------------------------------- 192 (491)
T 4gc0_A 179 YCVNYFIA----------------R---SGDAS----------------------------------------------- 192 (491)
T ss_dssp HHHHHHHH----------------T---TSCTT-----------------------------------------------
T ss_pred hhcchhhc----------------c---ccccc-----------------------------------------------
Confidence 77665430 0 00000
Q ss_pred HHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHH
Q psy10231 247 VYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSL 326 (607)
Q Consensus 247 ~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l 326 (607)
......||..+.+..+++++.++..+++||||+|+..+++.+++++.+
T Consensus 193 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l 240 (491)
T 4gc0_A 193 --------------------------------WLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGIL 240 (491)
T ss_dssp --------------------------------TTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHH
T ss_pred --------------------------------cccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhH
Confidence 000124555566666666666668889999999999999999999988
Q ss_pred HHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCcc
Q psy10231 327 VWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLD 406 (607)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (607)
++.++++...++..+ .++..+++++. ......++ .++.........++++.+.+.+..|.+.+.+..+.+..
T Consensus 241 ~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (491)
T 4gc0_A 241 RKIMGNTLATQAVQE-IKHSLDHGRKT---GGRLLMFG----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTD 312 (491)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHH---TTHHHHSC----CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHH
T ss_pred HHhcCCchhHHHHHH-HHHHHHhhhhh---hhHHHHhc----ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCcc
Confidence 877654433222211 11111111111 11111121 22355566667777888889999999999888776443
Q ss_pred -hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHH
Q psy10231 407 -DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASM 485 (607)
Q Consensus 407 -~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (607)
......+.++..+++.++++++.||+|||+.++.+.....++++.++..... ....+..+...+.+...+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~ 384 (491)
T 4gc0_A 313 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT--------QAPGIVALLSMLFYVAAFA 384 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT--------TCCHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc--------ccchHHHHHHHHHHHHHHH
Confidence 4556677788899999999999999999999999888888877776654322 1334455566666677777
Q ss_pred hccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh------hhhHHHHHHHHHHHHHHHHHhhhccc
Q psy10231 486 LGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL------LNMGGMMWAFSCACLLAMVFIQAFLP 559 (607)
Q Consensus 486 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~ 559 (607)
.+..++.+.+.+|++|++.|+++.|+.+.++++++++++.+.+.+.+. .+....|++++++++++.++.++++|
T Consensus 385 ~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 385 MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 888889999999999999999999999999999999999888876543 34455788999999999999999999
Q ss_pred CCCCCCHHHHHHHhhccCC
Q psy10231 560 ETQGKTLLEIENHFRGKKN 578 (607)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~ 578 (607)
|||+|++||+|+.++++++
T Consensus 465 ETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 465 ETKGKTLEELEALWEPETK 483 (491)
T ss_dssp CCTTCCHHHHGGGTC----
T ss_pred CCCCCCHHHHHHHhCCCCc
Confidence 9999999999888765543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=7.1e-34 Score=300.24 Aligned_cols=379 Identities=13% Similarity=0.076 Sum_probs=278.0
Q ss_pred hhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHh--
Q psy10231 34 HCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITV-- 111 (607)
Q Consensus 34 ~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~-- 111 (607)
++.+++.....+.+|.+.+ ++ .+..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.+++++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~---~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 113 (451)
T 1pw4_A 38 AAYYLVRKNFALAMPYLVE---QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVP 113 (451)
T ss_dssp HHHHHHHTSHHHHHHHTTS---ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHH---Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhh
Confidence 3455566667788888888 88 99999999999999999999999999999999999999999999999999999
Q ss_pred --ccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----h-HHHHHHHhH
Q psy10231 112 --SKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----T-WQYTSAACA 183 (607)
Q Consensus 112 --a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~-Wr~~f~~~~ 183 (607)
++|++.++++|+++|++.+...+ ..+++.|++|+++|++++++...+.++|.++++.+++.+ + ||+.|++.+
T Consensus 114 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~ 193 (451)
T 1pw4_A 114 WATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA 193 (451)
T ss_dssp HHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHH
T ss_pred hccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999999999999999 999999999999999999999999999999999999875 7 999999999
Q ss_pred HHHHHHHHH-HhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCccccc
Q psy10231 184 VVALVGFAA-MHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLS 262 (607)
Q Consensus 184 ~~~~~~~~~-~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~ 262 (607)
++.++..++ .+++||+|+....+..++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 221 (451)
T 1pw4_A 194 FCAILVALFAFAMMRDTPQSCGLPPIEE---------------------------------------------------- 221 (451)
T ss_dssp HHHHHHHHHHHHHCCCSSTTTCCCSCTT----------------------------------------------------
T ss_pred HHHHHHHHHHHhhccCCHhhcCCCChhh----------------------------------------------------
Confidence 888776554 355677654321111000
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHH
Q psy10231 263 AFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKE 342 (607)
Q Consensus 263 ~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 342 (607)
..+.++. +
T Consensus 222 -----------------------------------------------------~~~~~~~----------------~--- 229 (451)
T 1pw4_A 222 -----------------------------------------------------YKNDYPD----------------D--- 229 (451)
T ss_dssp -----------------------------------------------------TCCC-----------------------
T ss_pred -----------------------------------------------------hcccccc----------------c---
Confidence 0000000 0
Q ss_pred HHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHH
Q psy10231 343 IQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSLD-DYVASIIVAGLRFF 420 (607)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~ 420 (607)
. ++.++++........++.++++..+.. .+..+......+....+.|.++++ .|.+.. .........++.++
T Consensus 230 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 303 (451)
T 1pw4_A 230 Y-NEKAEQELTAKQIFMQYVLPNKLLWYI-----AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIP 303 (451)
T ss_dssp ----------CCTHHHHHHTSSCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHH
T ss_pred c-hhhhhcccccccchHHHHHcCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 0 000000001111113455555544332 222223333466778888998876 566543 46677778889999
Q ss_pred HHHHHhHhhccc--CCchhHHHhhHHHH-HHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhc
Q psy10231 421 MAIIGSACIQMF--SRRALATTSAFFMA-LSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIA 497 (607)
Q Consensus 421 ~~~~~g~l~d~~--grr~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (607)
+.++.+++.||+ +||+.+..+..+.. ++.+++... .....+.......+.+ .+.....+..+.+..
T Consensus 304 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~ 372 (451)
T 1pw4_A 304 GTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN----------PAGNPTVDMICMIVIG-FLIYGPVMLIGLHAL 372 (451)
T ss_dssp HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC----------CTTCHHHHHHHHHHHH-HHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh----------cccCHHHHHHHHHHHH-HHHhchHHHHHHHHH
Confidence 999999999999 99988877666555 444443321 1112223333333322 223334455568899
Q ss_pred cccCccchhhHHHHHHHHHHH-HHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Q psy10231 498 ELFPLSVRGIMGGIVCSLGYL-FIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAF 557 (607)
Q Consensus 498 e~~p~~~r~~~~g~~~~~~~~-~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 557 (607)
|.+|++.|+++.|+.+.+.++ +..+++.+.|.+.+..|+...|++.+++.+++.++..+.
T Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 373 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999888888888888777665544
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.3e-31 Score=281.92 Aligned_cols=354 Identities=13% Similarity=0.078 Sum_probs=264.5
Q ss_pred hhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHH---H
Q psy10231 34 HCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTII---T 110 (607)
Q Consensus 34 ~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~---a 110 (607)
++.+++....++.+|.+.+ ++|.+..+.+++.+.+.++..+++++.|+++||+|||++++++.++.+++.+++ +
T Consensus 36 ~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 112 (438)
T 3o7q_A 36 FLWAVANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA 112 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666777888999988 999999999999999999999999999999999999999999999999999999 8
Q ss_pred hccchhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhhh---------------
Q psy10231 111 VSKGFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVT--------------- 174 (607)
Q Consensus 111 ~a~~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l~--------------- 174 (607)
+++|++.++++|+++|++.+...+ ..+++.|++|+++|++++++.+.+.++|..+++.+++.+.
T Consensus 113 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~ 192 (438)
T 3o7q_A 113 EIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKM 192 (438)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHS
T ss_pred ccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 999999999999999999999999 9999999999999999999999999999999999988762
Q ss_pred ---------------HHHHHHHhHHHHHHHHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhc
Q psy10231 175 ---------------WQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAI 239 (607)
Q Consensus 175 ---------------Wr~~f~~~~~~~~~~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 239 (607)
||+.|++.+++.++..+.
T Consensus 193 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~----------------------------------------------- 225 (438)
T 3o7q_A 193 SPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALL----------------------------------------------- 225 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred CcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 666665555444443331
Q ss_pred chhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCCh
Q psy10231 240 GMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCT 319 (607)
Q Consensus 240 g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~ 319 (607)
+.....||+++. +++.
T Consensus 226 -------------------------------------------------------------~~~~~~p~~~~~---~~~~ 241 (438)
T 3o7q_A 226 -------------------------------------------------------------IMLTKFPALQSD---NHSD 241 (438)
T ss_dssp -------------------------------------------------------------HHHCCCCCCTTT---CCCC
T ss_pred -------------------------------------------------------------HHHHcCCccccc---cccc
Confidence 122234554320 0000
Q ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHH-H
Q psy10231 320 KEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNF-F 398 (607)
Q Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 398 (607)
+ ++.+...++++.+++|..+...+..+ ...........|.|.+ +
T Consensus 242 ~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 286 (438)
T 3o7q_A 242 A------------------------------KQGSFSASLSRLARIRHWRWAVLAQF-----CYVGAQTACWSYLIRYAV 286 (438)
T ss_dssp S------------------------------STTSHHHHHHHHTTCSHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred c------------------------------cccchhhhHHHHHhChHHHHHHHHHH-----HHHHHHHHHHHHHHHHhh
Confidence 0 00111234456677776554332222 2222356677888888 7
Q ss_pred HHh-CCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHH
Q psy10231 399 EDA-GSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLAC 476 (607)
Q Consensus 399 ~~~-g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (607)
++. |.+.. .........++.+++.++.+++.||++||+.+..+..+..++.+++... ........
T Consensus 287 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 353 (438)
T 3o7q_A 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------------GGHVGLIA 353 (438)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------------CHHHHHHH
T ss_pred hccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-------------CCcHHHHH
Confidence 765 66543 5667777888899999999999999999999988887777776655441 12222223
Q ss_pred HHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhh-hHHHHHHHHHHHHHHHH
Q psy10231 477 ILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLN-MGGMMWAFSCACLLAMV 552 (607)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g-~~~~~~~~~~~~~~~~~ 552 (607)
..+.. .+.....+..+.+..|.+|++ ++.+.++.. .+.++..++|.+.|.+.+..| +...|++.+++.++..+
T Consensus 354 ~~~~g-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 354 LTLCS-AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHH-HHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33333 333344577778888999977 888888877 778999999999999999998 88777765554444433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=2.2e-28 Score=261.32 Aligned_cols=413 Identities=11% Similarity=0.001 Sum_probs=244.1
Q ss_pred ccccCccchhHHHHHHHHHhhHhhhHHHHhhhh-hcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh
Q psy10231 56 IISISSDDASWIASLGVISTPVGSLFAGIFMDL-LGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA 134 (607)
Q Consensus 56 ~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr-~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~ 134 (607)
|+|.+..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++..++.+++++++|++.++++|+++|++.+...+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 499999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred -hHhHHhhccCCCc--cccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHHhcC-CCChhhHhhc
Q psy10231 135 -CYVYVAEICLPND--RGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAMHAV-PETPSWLARQ 206 (607)
Q Consensus 135 -~~~~i~e~~~~~~--r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~~~~-pes~~~~~~~ 206 (607)
..+++.|++|+++ |+.+.++++.+.++|..++|.+++.+ +||+.|++.++..++..+..++. |+.. .++
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~---~~~ 204 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTL---DPH 204 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC---CSC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccc---ccc
Confidence 9999999999988 77788889999999999999999887 89999999887776665543322 2211 000
Q ss_pred cccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHhhH
Q psy10231 207 GMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQ 286 (607)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~Wr 286 (607)
++..+.-....+ .....+
T Consensus 205 ~~~~~~~~~~~~--------------------------------------------------------------~~~~~~ 222 (491)
T 4aps_A 205 YLRPTDPLAPEE--------------------------------------------------------------VKPLLV 222 (491)
T ss_dssp CSCCSCCCSHHH--------------------------------------------------------------HHHHHH
T ss_pred ccCCCCccccch--------------------------------------------------------------hHHHHH
Confidence 000000000000 000001
Q ss_pred HHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHHhhcCCccchhhhhhccC
Q psy10231 287 YTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNS 366 (607)
Q Consensus 287 ~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (607)
.........++..+..... + +.+.++......... ........ .+. .+...... ..+++
T Consensus 223 ~~g~~l~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~-----~~~~~~~~---~~~--~~~~~~~~--~~~~~ 281 (491)
T 4aps_A 223 KVSLAVAGFIAIIVVMNLV--G-------WNSLPAYINLLTIVA-----IAIPVFYF---AWM--ISSVKVTS--TEHLR 281 (491)
T ss_dssp HCCCCCHHHHHHHHHHHHH--S-------SCCTTHHHHHHHHHH-----HHHHHHHH---HHH--C--------------
T ss_pred HHHHHHHHHHHHHHHHHhc--c-------CcccccchhhhhHHH-----HHHHHHHH---HHH--hhcccccH--HHHHH
Confidence 1000011111111111000 0 000000000000000 00000000 000 00000000 00111
Q ss_pred cch-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCC-cchHHHHHHHHHHHHHHHHHHhHhhcccCCchhHH----
Q psy10231 367 AVW-KPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSS-LDDYVASIIVAGLRFFMAIIGSACIQMFSRRALAT---- 439 (607)
Q Consensus 367 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~---- 439 (607)
... ........+.. ........+.+.+.++ .+.+ ...........+..+++.++.+++.||++||+...
T Consensus 282 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~ 357 (491)
T 4aps_A 282 VVSYIPLFIAAVLFW----AIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKF 357 (491)
T ss_dssp CTTHHHHHHHHHHHH----HHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHH
Confidence 111 11111111111 1223334455666654 2443 34555666677778888999999999999986544
Q ss_pred -HhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHH
Q psy10231 440 -TSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYL 518 (607)
Q Consensus 440 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~ 518 (607)
.+..+.+++.+++........ ...+...+.......+.+. ......+..+.++.|.+|++.|+++.|+.+...++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 433 (491)
T 4aps_A 358 AVGLMFAGLSFLLMAIPGALYG---TSGKVSPLWLVGSWALVIL-GEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSV 433 (491)
T ss_dssp HHHHHHHHHHHTTTHHHHHHCC---CCTTCCTHHHHHHHHHHHH-HHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CCCCccHHHHHHHHHHHHH-HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 444555454444333211100 0111233333333333333 33334567778999999999999999999999999
Q ss_pred HHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy10231 519 FIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 519 ~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (607)
|..+++.+.+.+.+. ++...+..++.+++++.++.+++.++.++
T Consensus 434 g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 434 GSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877654 56667888888888877777766665544
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=5.3e-29 Score=256.39 Aligned_cols=344 Identities=14% Similarity=0.100 Sum_probs=248.2
Q ss_pred hhccccccccccccccccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhcc
Q psy10231 34 HCNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSK 113 (607)
Q Consensus 34 ~~~~~~~~~~~~~~p~l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~ 113 (607)
++.+++.....+.+|.+.+ ++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 86 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMAR---DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS 86 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHT---TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc
Confidence 4455666677788888888 9999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccchhhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHH
Q psy10231 114 GFTLLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALV 188 (607)
Q Consensus 114 ~~~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~ 188 (607)
|++.+++.|+++|++.+...+ ..+++.|++|+++|+++.++...+..+|..+++.+++.+ +||+.|++.++..++
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 166 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAG 166 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999999999887 899999988888776
Q ss_pred HHHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHH
Q psy10231 189 GFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVF 268 (607)
Q Consensus 189 ~~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~ 268 (607)
..+.
T Consensus 167 ~~~~---------------------------------------------------------------------------- 170 (375)
T 2gfp_A 167 VTFS---------------------------------------------------------------------------- 170 (375)
T ss_dssp HHCC----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 6552
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHH
Q psy10231 269 VSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLK 348 (607)
Q Consensus 269 ~~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (607)
..+.+||+++. +++
T Consensus 171 ---------------------------------~~~~~~~~~~~---~~~------------------------------ 184 (375)
T 2gfp_A 171 ---------------------------------MARWMPETRPV---DAP------------------------------ 184 (375)
T ss_dssp ---------------------------------CCCSSCCCSTT---TCC------------------------------
T ss_pred ---------------------------------HHHHCcccCCC---Ccc------------------------------
Confidence 23334444321 000
Q ss_pred HhhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hCCCc-chHHHHHHHHHHHHHHHHHHh
Q psy10231 349 VQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFED-AGSSL-DDYVASIIVAGLRFFMAIIGS 426 (607)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~g 426 (607)
+++...++++.+++|+.+...+. .+...........+.|.++++ .|.+. ..+.......++.+++.++.+
T Consensus 185 ---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 256 (375)
T 2gfp_A 185 ---RTRLLTSYKTLFGNSGFNCYLLM-----LIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAG 256 (375)
T ss_dssp ---CCCTTTCSTHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ---cccHHHHHHHHhcCcchHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112233455555544432222 222233355666777777665 45533 345566677788888999999
Q ss_pred HhhcccCCchhHHHhhHH-HHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccch
Q psy10231 427 ACIQMFSRRALATTSAFF-MALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVR 505 (607)
Q Consensus 427 ~l~d~~grr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 505 (607)
++.||.+++ ...+... ...+...+... .... .+.+.......+...+.+ ...+....+..|.+| +.|
T Consensus 257 ~l~~r~~~~--~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p-~~~ 324 (375)
T 2gfp_A 257 RPNKRFSTL--MWQSVICCLLAGLLMWIPD-WFGV-------MNVWTLLVPAALFFFGAG-MLFPLATSGAMEPFP-FLA 324 (375)
T ss_dssp TTTTHHHHH--HHHHHHHHHHTSSSSSHHH-HHHH-------HHHHHHHHHHHHHHHHHH-HTSSTTHHHHHTHHH-HHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHh-hhcc-------ccHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhCC-ccc
Confidence 999998772 2222222 11111111100 0000 112222233333333333 345667788999998 889
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHH
Q psy10231 506 GIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWA 542 (607)
Q Consensus 506 ~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~ 542 (607)
+++.|+.+...+++..+++.+.+.+.+..++...+..
T Consensus 325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 9999999999999999999999999887777655544
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.94 E-value=1.6e-26 Score=241.40 Aligned_cols=366 Identities=13% Similarity=0.074 Sum_probs=227.8
Q ss_pred ccccccccc-ccCCCcccccCccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHH---HHHHhccch-
Q psy10231 41 AIPSILIPQ-LQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGW---TIITVSKGF- 115 (607)
Q Consensus 41 ~~~~~~~p~-l~~~~~~~~~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~---~~~a~a~~~- 115 (607)
+...+.+|. +++ ++|.++.+.|++.+.+.+++.++++++|+++||+|||++++++..+++++. ..+++++..
T Consensus 24 ~~~~~~~~~~l~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T 2cfq_A 24 GAYFPFFPIWLHD---INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ 100 (417)
T ss_dssp HHHTTTHHHHHHT---TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344554 445 789999999999999999999999999999999999999998887765532 212233221
Q ss_pred hHHHHHHHHHhhhhhhHhh-hHhHHhhccCC--CccccccchhhHHHHHHHHHHHHHhhhh---hHHHHHHHhHHHHHHH
Q psy10231 116 TLLCVGRFITGMAIGMSSA-CYVYVAEICLP--NDRGYLSAFGPVFVSLGVLIVYSLGYIV---TWQYTSAACAVVALVG 189 (607)
Q Consensus 116 ~~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~--~~r~~~~~~~~~~~~lG~~ig~~l~~~l---~Wr~~f~~~~~~~~~~ 189 (607)
..+...|++.|++.+...+ ....+.++.++ ++|+...+....+..+|..++|.+++.+ +||+.|++.++..++.
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALIL 180 (417)
T ss_dssp TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 1234567777777766665 55555555443 3557666777666777888888887766 7999999877765544
Q ss_pred HHHHhcCCCChhhHhhccccccchhhhccccchhhhhHhHHHHHHHHhhcchhhhHHHHHHHhcCCCCcccccchhhHHH
Q psy10231 190 FAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFV 269 (607)
Q Consensus 190 ~~~~~~~pes~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~E~~~~~~r~~~~~~~~~~~ 269 (607)
.+..++.||
T Consensus 181 ~~~~~~~~~----------------------------------------------------------------------- 189 (417)
T 2cfq_A 181 AVLLFFAKT----------------------------------------------------------------------- 189 (417)
T ss_dssp HHHSCSSCC-----------------------------------------------------------------------
T ss_pred HHHHHHcCc-----------------------------------------------------------------------
Confidence 442222222
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHhhhccccCChHHHHHhCChHHHHHHHHHHhcCchhhhhHHHHHHHHHHH
Q psy10231 270 SLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKV 349 (607)
Q Consensus 270 ~~g~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (607)
|+|+ +.+.++. .+ +
T Consensus 190 --------------------------------------~~~~----~~~~~~~---------~~---------------~ 203 (417)
T 2cfq_A 190 --------------------------------------DAPS----SATVANA---------VG---------------A 203 (417)
T ss_dssp --------------------------------------CCSC----SSCSSSS---------SS---------------S
T ss_pred --------------------------------------cccc----ccccccc---------cc---------------c
Confidence 2110 0000000 00 0
Q ss_pred hhcCCccchhhhhhccCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-CCC---c-chHHHHHHHHHHHHHHHHH
Q psy10231 350 QMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDA-GSS---L-DDYVASIIVAGLRFFMAII 424 (607)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~---~-~~~~~~~~~~~~~~~~~~~ 424 (607)
++++....++++.+++++.+...+..+... ..+.....+.|.++.+. +.. . .......+..+..+++.++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 278 (417)
T 2cfq_A 204 NHSAFSLKLALELFRQPKLWFLSLYVIGVS-----CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFF 278 (417)
T ss_dssp CCCCCCHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHhcCCchhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHH
Confidence 000011122345566665443222211111 12233344566666542 211 1 1233445556677888999
Q ss_pred HhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccc
Q psy10231 425 GSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSV 504 (607)
Q Consensus 425 ~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 504 (607)
.+++.||+|||+.+..+..+.++..+.+++. ...+..+....+..... ....+..+.++.|.+|++.
T Consensus 279 ~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~ 345 (417)
T 2cfq_A 279 APLIINRIGGKNALLLAGTIMSVRIIGSSFA------------TSALEVVILKTLHMFEV-PFLLVGCFKYITSQFEVRF 345 (417)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC------------CSHHHHHHHTTHHHHHH-HHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHH
Confidence 9999999999998887777776665554331 11222222222222221 2223344688999999999
Q ss_pred hhhHHHHH-HHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q psy10231 505 RGIMGGIV-CSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGK 564 (607)
Q Consensus 505 r~~~~g~~-~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (607)
|+++.++. +...++|+.++|.+.|.+.+..|+...|.+.+++++++.++.++..||+++.
T Consensus 346 ~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 346 SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 99999995 7888899999999999999988888888888888888887776666765543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.93 E-value=2.2e-25 Score=240.07 Aligned_cols=146 Identities=13% Similarity=0.145 Sum_probs=131.7
Q ss_pred cccccccCCCcccc------cCccchhHHHHHHHHHhhHhhhHHHHhhhhh-cCchhhhhhhhHHHHHHHHHHhcc-chh
Q psy10231 45 ILIPQLQKPSSIIS------ISSDDASWIASLGVISTPVGSLFAGIFMDLL-GRKTTVQLTAIPFIIGWTIITVSK-GFT 116 (607)
Q Consensus 45 ~~~p~l~~~~~~~~------~s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~-Grr~~l~~~~~l~~~~~~~~a~a~-~~~ 116 (607)
.+.+.+.+ ++| .+..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++.+++++++ |++
T Consensus 34 ~l~~~l~~---~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (524)
T 2xut_A 34 ILTPFLMT---ALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ 110 (524)
T ss_dssp HHHHHHHH---SCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHH---HhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 33344566 677 9999999999999999999999999999999 999999999999999999999999 999
Q ss_pred HHHHHHHHHhhhhhhHhh-hHhHHhhccCCCccccccch---hhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHH
Q psy10231 117 LLCVGRFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAF---GPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALV 188 (607)
Q Consensus 117 ~l~~~R~l~G~g~g~~~~-~~~~i~e~~~~~~r~~~~~~---~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~ 188 (607)
.++++|+++|++.+...+ ..+++.|++|+++|+++.+. ...+.++|..++|.+++.+ +||+.|++.++..++
T Consensus 111 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~ 190 (524)
T 2xut_A 111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFV 190 (524)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999877666 8899999999999998877 899999998888766
Q ss_pred HHHHH
Q psy10231 189 GFAAM 193 (607)
Q Consensus 189 ~~~~~ 193 (607)
..+..
T Consensus 191 ~~~~~ 195 (524)
T 2xut_A 191 ATVFF 195 (524)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.28 E-value=1.7e-11 Score=128.50 Aligned_cols=181 Identities=12% Similarity=-0.069 Sum_probs=133.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHH
Q psy10231 373 FILIGFFLFQEASGMYIVLYYAVNFFEDAGSSL-DDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGI 451 (607)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~ 451 (607)
+....+..+...........+.|.+.++. .+. +.+.......++..++.++.|+++||+|||+.+..+.++.+++.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 108 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLF 108 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 33333444444434445566677777666 543 4677888888999999999999999999999999999988888877
Q ss_pred HhhhhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHH
Q psy10231 452 SGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM 531 (607)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~ 531 (607)
.++.... . ...+..+....+.+.+.+ ...+...+++.|.+|++.|+.+.|+.+....+|..+++.+.+.+.
T Consensus 109 ~~~~~~~-~-------~~~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 109 MGFVPWA-T-------SSIAVMFVLLFLCGWFQG-MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HHHCHHH-H-------SSSSHHHHHHHHHHHHHH-HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHhhhhc-c-------ccHHHHHHHHHHHHHHhh-hccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7652110 0 233344444333333333 345666789999999999999999999999999999999999988
Q ss_pred Hhhh-hHHHHHHHHHHHHHHHHHhhhcccCCCC
Q psy10231 532 YLLN-MGGMMWAFSCACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 532 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (607)
+..| |+..|++.+.++++..++.++.+||+++
T Consensus 180 ~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 180 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 8888 9999999888888877777777777654
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.26 E-value=3.2e-10 Score=118.23 Aligned_cols=168 Identities=12% Similarity=-0.023 Sum_probs=121.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhh
Q psy10231 378 FFLFQEASGMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYE 456 (607)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~ 456 (607)
+..+.............|.+.++.|.+.. .+.......++..++.++.|+++||+|||+.+..+.++.+++.++.....
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 112 (438)
T 3o7q_A 33 SLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA 112 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Confidence 33333444446667777888788887654 57778888889999999999999999999999999998888887763211
Q ss_pred hhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHH-Hhhh
Q psy10231 457 YYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLM-YLLN 535 (607)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~-~~~g 535 (607)
.. ...+..+...++.+.+ .....+....++.|.+|++.|+.+.++.+....+|..+++.+.+.+. +..+
T Consensus 113 ~~---------~~~~~l~~~~~l~G~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 113 EI---------MNYTLFLVGLFIIAAG-LGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HT---------TCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred cc---------ccHHHHHHHHHHHHhh-HHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 11 2223333333333333 33345666789999999999999999999999999999999999888 4433
Q ss_pred -------------------------hHHHHHHHHHHHHHHHHHhh
Q psy10231 536 -------------------------MGGMMWAFSCACLLAMVFIQ 555 (607)
Q Consensus 536 -------------------------~~~~~~~~~~~~~~~~~~~~ 555 (607)
|+..|++.+.+.++..++.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77788777766665555443
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.21 E-value=5.3e-10 Score=118.63 Aligned_cols=164 Identities=9% Similarity=-0.090 Sum_probs=122.1
Q ss_pred hhhhHHHHHHHHHHHHHH------hCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcc-cCCchhHHHhhHHHHHHHHHHhh
Q psy10231 383 EASGMYIVLYYAVNFFED------AGSSLD-DYVASIIVAGLRFFMAIIGSACIQM-FSRRALATTSAFFMALSMGISGT 454 (607)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~------~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~l~~~~~~~~~~~~~~~~ 454 (607)
...+++....+.+.++++ .|.+.. .+.......++..++.++.|+++|| +|||+.+..+..+..++.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~ 104 (491)
T 4aps_A 25 ERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence 333456666777777765 466543 5677788889999999999999999 89999999999888888877665
Q ss_pred hhhhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccc--hhhHHHHHHHHHHHHHHHHhhhcHHHHH
Q psy10231 455 YEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSV--RGIMGGIVCSLGYLFIFTTVKMYPDLMY 532 (607)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 532 (607)
. .+.+..+....+.+.+. ....+...+++.|.+|++. |+.+.++.+....+|..++|.+.+.+.+
T Consensus 105 ~------------~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 171 (491)
T 4aps_A 105 P------------FGASALFGSIILIIIGT-GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE 171 (491)
T ss_dssp C------------CSTTHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h------------hhHHHHHHHHHHHHHHH-HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 22333333333333333 3345666789999999988 7788888999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhccc
Q psy10231 533 LLNMGGMMWAFSCACLLAMVFIQAFLP 559 (607)
Q Consensus 533 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 559 (607)
..||+..|++.+...+++.+...+..|
T Consensus 172 ~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 172 AAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999998887777666665544433
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.20 E-value=1.1e-10 Score=119.07 Aligned_cols=165 Identities=9% Similarity=-0.080 Sum_probs=126.2
Q ss_pred hHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccC
Q psy10231 386 GMYIVLYYAVNFFEDAGSSLD-DYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSM 464 (607)
Q Consensus 386 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.........|.+.++.|.+.. .+.......+...++.++.|+++||+|||+.+..+.....++.+......
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-------- 86 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-------- 86 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc--------
Confidence 345555666777777776544 56677888889999999999999999999999999888888887766521
Q ss_pred CCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHhhhhHHHHHHHH
Q psy10231 465 DDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFS 544 (607)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~g~~~~~~~~~ 544 (607)
+.+..+... ...........+....++.|.+|++.|+.+.++.+....+|..+++.+.+.+.+..+|+..+++.+
T Consensus 87 ----~~~~l~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (375)
T 2gfp_A 87 ----SLTVLIAAS-AMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLL 161 (375)
T ss_dssp ----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred ----cHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHH
Confidence 112222222 222333333456667889999999999999999999999999999999999999889999999888
Q ss_pred HHHHHHHHHhhhcccCCCC
Q psy10231 545 CACLLAMVFIQAFLPETQG 563 (607)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~ 563 (607)
...++..+...+..||+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 162 VLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHCcccCC
Confidence 8888777766667777654
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.11 E-value=2.5e-09 Score=114.34 Aligned_cols=162 Identities=10% Similarity=-0.023 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHHH-hC------CCc-chHHHHHHHHHHHHHHHHHHhHhhccc-CCchhHHHhhHHHHHHHHHHhhhh
Q psy10231 386 GMYIVLYYAVNFFED-AG------SSL-DDYVASIIVAGLRFFMAIIGSACIQMF-SRRALATTSAFFMALSMGISGTYE 456 (607)
Q Consensus 386 ~~~~~~~~~~~~~~~-~g------~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~l~~~~~~~~~~~~~~~~~~ 456 (607)
+.+....+.+.++++ .| .+. ..+.......++..++.++.|+++||+ |||+.+..+.++.+++.++.++..
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~ 106 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE 106 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc
Confidence 355666777777654 56 544 356777888889999999999999999 999999998888888777766520
Q ss_pred hhhccccCCCCCCChHHHHHHHHHHHHHHhccchhhhhhhccccCccchhhHHHH---HHHHHHHHHHHHhhhcHHHHHh
Q psy10231 457 YYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGI---VCSLGYLFIFTTVKMYPDLMYL 533 (607)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~---~~~~~~~~~~i~~~i~~~l~~~ 533 (607)
...+..+....+ .+.......+...+++.|.+|++.|+.+.+. .+...++|..++|.+.+.+.+.
T Consensus 107 -----------~~~~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 107 -----------HSVQGFYTGLFL-IALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp -----------SCHHHHHHHHHH-HHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred -----------ccHHHHHHHHHH-HHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 022233333333 3333334456777899999999999876666 8889999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhccc
Q psy10231 534 LNMGGMMWAFSCACLLAMVFIQAFLP 559 (607)
Q Consensus 534 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 559 (607)
.+|+..|++.+.+.+++.+...+..+
T Consensus 175 ~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 175 FGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999998888777766655444333
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.04 E-value=3.8e-10 Score=117.11 Aligned_cols=142 Identities=11% Similarity=0.106 Sum_probs=120.6
Q ss_pred CccchhHHHHHHHHHhhHhhhHHHHhhhhhcCchhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHhhhhhhHhh-hHhH
Q psy10231 60 SSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSA-CYVY 138 (607)
Q Consensus 60 s~~~~~~i~s~~~l~~~i~~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~a~a~~~~~l~~~R~l~G~g~g~~~~-~~~~ 138 (607)
+..+.+++.+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+ ...+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455668888888889999999999999999999999999988888888888888888888889999998888888 8899
Q ss_pred HhhccCCCccccccch-hhHHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHHH-hcCCCChh
Q psy10231 139 VAEICLPNDRGYLSAF-GPVFVSLGVLIVYSLGYIV----TWQYTSAACAVVALVGFAAM-HAVPETPS 201 (607)
Q Consensus 139 i~e~~~~~~r~~~~~~-~~~~~~lG~~ig~~l~~~l----~Wr~~f~~~~~~~~~~~~~~-~~~pes~~ 201 (607)
+.|.+|++.|+...+. ++....+|..++|.+++.+ +++..|.+.+++.++..+.. +..||.++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 9999999999999888 4778889999999888876 78889988888877776654 44666543
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.75 E-value=5.4e-08 Score=102.99 Aligned_cols=153 Identities=16% Similarity=-0.004 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcccCCchhHHHhhHHHHHHHHHHhhhhhhhccccCC-----CCCCChHHHHHHHHHHHH
Q psy10231 409 VASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMD-----DRPLNWIPLACILANVCA 483 (607)
Q Consensus 409 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 483 (607)
+......++.++|+++.|+++||+|||+.+..+.++..++.++.++........... ....+...+...=...+.
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~ 138 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGI 138 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHH
Confidence 445556788899999999999999999999999999888887776421110000000 001222223333233333
Q ss_pred HHhccchhhhhhhccccCccchhhHHHHHHHHHHHHHHHHhhhcHHHHHh--------hhhHHHHHHHHHHHHHHHHHhh
Q psy10231 484 SMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYL--------LNMGGMMWAFSCACLLAMVFIQ 555 (607)
Q Consensus 484 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~--------~g~~~~~~~~~~~~~~~~~~~~ 555 (607)
...+..+....++.|..|++.|+...++.+.....|...+..+....... .+|+..+.......++ .++..
T Consensus 139 g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 217 (491)
T 4gc0_A 139 GVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL-FLMLL 217 (491)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH-HHHHG
T ss_pred HHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh-hhhhh
Confidence 33334566678999999999999999999988888888777666544432 2344334333333333 33444
Q ss_pred hcccCCC
Q psy10231 556 AFLPETQ 562 (607)
Q Consensus 556 ~~~~~~~ 562 (607)
++.||+.
T Consensus 218 ~~~peSp 224 (491)
T 4gc0_A 218 YTVPESP 224 (491)
T ss_dssp GGSCCCH
T ss_pred hcCCCCh
Confidence 5678863
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=30.18 E-value=25 Score=18.48 Aligned_cols=14 Identities=29% Similarity=0.562 Sum_probs=11.0
Q ss_pred HHHHhhhhhcCchh
Q psy10231 81 FAGIFMDLLGRKTT 94 (607)
Q Consensus 81 ~~g~l~Dr~Grr~~ 94 (607)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888999999854
Done!