RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10231
(607 letters)
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 137 bits (347), Expect = 6e-35
Identities = 93/351 (26%), Positives = 170/351 (48%), Gaps = 18/351 (5%)
Query: 233 FITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVY-------SLGYIVT 284
+ G+ +G++SA +Y++EI RG L++ + ++ G+L+ Y SL +
Sbjct: 135 VLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG 194
Query: 285 WQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKE-- 342
W+ + A + F + +PE+P WL +G +EAR SL R ++ L E
Sbjct: 195 WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELE 254
Query: 343 ---IQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFE 399
I++S++ + S + T F+ + FQ+ +G+ ++YY+ FE
Sbjct: 255 LIDIKRSIEKRSVQPSW-GSLFSSTRRIRR-RLFLGVVLQWFQQFTGINAIMYYSPTIFE 312
Query: 400 DAGSSLDD-YVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYY 458
+AG S D ++ SIIV + F + + F RR L A MA+ + + G
Sbjct: 313 NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGI--LG 370
Query: 459 FSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYL 518
S ++ + + + IL + +G +PWV+++E+FPLS+R I + +L
Sbjct: 371 ASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWL 430
Query: 519 FIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLEI 569
F ++P ++ + +GG+ F +L ++F+ FLPET+G+TL EI
Sbjct: 431 ANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
Score = 79.3 bits (196), Expect = 1e-15
Identities = 42/154 (27%), Positives = 81/154 (52%), Gaps = 11/154 (7%)
Query: 65 SWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFT---LLCVG 121
+ S+ ++ +G+LFAG D GRK ++ + A+ F+IG ++ ++ +L VG
Sbjct: 74 GLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVG 133
Query: 122 RFITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVY-------SLGYIV 173
R + G+ +G++SA +Y++EI RG L++ + ++ G+L+ Y SL +
Sbjct: 134 RVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTL 193
Query: 174 TWQYTSAACAVVALVGFAAMHAVPETPSWLARQG 207
W+ + A + F + +PE+P WL +G
Sbjct: 194 GWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKG 227
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 127 bits (322), Expect = 1e-31
Identities = 87/348 (25%), Positives = 152/348 (43%), Gaps = 20/348 (5%)
Query: 233 FITGMAIGMSSACY-VYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYI-------VT 284
I G+ +G S +Y++EI RG L + + ++ G+L+ +G
Sbjct: 109 VIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDG 168
Query: 285 WQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQ 344
W+ V A++ + +PE+P WL +G +EAR L R + D E++E +
Sbjct: 169 WRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAK-LRGVSDVDQEIQEEK 227
Query: 345 QSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSS 404
SL+ + + + F V + + + +FQ+ +G+ + YY+ FE G S
Sbjct: 228 DSLE-RSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLS 286
Query: 405 LDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSM-GISGTYEYYFSELS 463
D + +IIV + F I + F RR L A MA+ +
Sbjct: 287 -DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKG 345
Query: 464 MDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTT 523
+ + IL + LG +PWV+++ELFPL VR I + +L F
Sbjct: 346 A-----GIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLI 400
Query: 524 VKMYPDLMYLLNMGGMMWAFSCACLLAM-VFIQAFLPETQGKTLLEIE 570
++P + +GG ++ L+ +F+ F+PET+G+TL EI+
Sbjct: 401 GFLFPIITG--AIGGYVFLVFAGLLVLFILFVFFFVPETKGRTLEEID 446
Score = 80.4 bits (199), Expect = 5e-16
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 10/158 (6%)
Query: 60 SSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKG--FTL 117
S+ + I S+ + +GSLFAG D GRK ++ + + F+IG + +KG F +
Sbjct: 44 STVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYM 103
Query: 118 LCVGRFITGMAIGMSSACY-VYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYI---- 172
L VGR I G+ +G S +Y++EI RG L + + ++ G+L+ +G
Sbjct: 104 LIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKY 163
Query: 173 ---VTWQYTSAACAVVALVGFAAMHAVPETPSWLARQG 207
W+ V A++ + +PE+P WL +G
Sbjct: 164 SNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKG 201
Score = 28.8 bits (65), Expect = 9.0
Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 35/208 (16%)
Query: 372 FFILIGFFLFQEASGM--YIVLYYAVNFFEDAGSSLDDYVASIIVAGL--------RFFM 421
+G FLF +G+ + A +S+ AS +++GL
Sbjct: 3 LVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIG 62
Query: 422 AIIGSACIQMFSRR-ALATTSAFFMALSMGI-----SGTYEYYFSELSMDDRPLNWIPLA 475
++ F R+ +L + F+ ++ Y + + L
Sbjct: 63 SLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG--------LG 114
Query: 476 CILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLN 535
+V M I+E+ P +RG +G + I + L N
Sbjct: 115 VGGISVLVPMY---------ISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSN 165
Query: 536 MGGMMWAFSCACLLA--MVFIQAFLPET 561
G + A ++ FLPE+
Sbjct: 166 SDGWRIPLGLQFVPAILLLIGLLFLPES 193
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 126 bits (318), Expect = 5e-31
Identities = 96/366 (26%), Positives = 164/366 (44%), Gaps = 40/366 (10%)
Query: 234 ITGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVT-------- 284
I G+ +G++S +Y+AEI + RG L +F + G L+VY + Y +
Sbjct: 129 IGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWL 188
Query: 285 ----WQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAEL 340
W+Y A+ A+ AL+ ++ VPETP +L +G ++A L +A L
Sbjct: 189 NTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIM-GNTLATQAL 247
Query: 341 KEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFL--FQEASGMYIVLYYAVNFF 398
+EI+ SL + I+IG L FQ+ G+ +VLYYA F
Sbjct: 248 QEIKHSLDHGRK-----TGGKLLMFGV----GVIVIGVMLSVFQQFVGINVVLYYAPEIF 298
Query: 399 EDAGSSLDD-YVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEY 457
+ G+S D + +IIV + ++ + F R+ L A MA+ M GT +
Sbjct: 299 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT-AF 357
Query: 458 YFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGY 517
Y + + L +L V A + + WV+++E+FP ++RG I + +
Sbjct: 358 YTQAPGI-------VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQW 410
Query: 518 LFIF----TTVKMYPDLMYLLNMGGMM--WAFSCACLLAMVFIQAFLPETQGKTLLEIEN 571
+ + T M + + + W + C +LA +F+ F+PET+GKTL E+E
Sbjct: 411 IANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEA 470
Query: 572 HFRGKK 577
+ +
Sbjct: 471 LWEPET 476
Score = 57.0 bits (138), Expect = 2e-08
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 25/157 (15%)
Query: 77 VGSLFAGIFMDLLGRKTTVQLTAIPFIIG-----------WTIITVSKGFTLLCVG-RFI 124
+G G + GR+ ++++ A+ F I +I + G+ V R I
Sbjct: 70 IGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII 129
Query: 125 TGMAIGMSSA-CYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVT--------- 174
G+ +G++S +Y+AEI + RG L +F + G L+VY + Y +
Sbjct: 130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLN 189
Query: 175 ---WQYTSAACAVVALVGFAAMHAVPETPSWLARQGM 208
W+Y A+ A+ AL+ ++ VPETP +L +G
Sbjct: 190 TDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGK 226
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 58.1 bits (141), Expect = 7e-09
Identities = 77/348 (22%), Positives = 125/348 (35%), Gaps = 43/348 (12%)
Query: 233 FITGMAI-GMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-TWQYTSA 290
+ GM I G+ V E R + VF SLG++++ + Y + W++
Sbjct: 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQL 247
Query: 291 ACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAELKEIQQSLKVQ 350
A ++ + F VPE+P WL QG +EA L +R + +L SL ++
Sbjct: 248 AVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKIL---QRIAKINGKKLPAEVLSLSLE 304
Query: 351 MAGSS---MDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDD 407
SS F + K L+ F A Y ++ N +
Sbjct: 305 KDLSSSKKQYSFLDLFRTPNLRKTTLCLM-MLWFTTAFSYYGLVLDLGNLG------GNI 357
Query: 408 YVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDR 467
Y+ I + +I I RR S +++ + D
Sbjct: 358 YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLL--------FVPVDL 409
Query: 468 PLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCS----LGYL---FI 520
LA + + Q+ ++ AEL+P VR +G VCS +G + F+
Sbjct: 410 YFLRTALAVL-GKFGITSA--FQMVYLYTAELYPTVVRN-LGVGVCSTMARVGSIISPFL 465
Query: 521 FTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTLLE 568
+ + L +L F LLA + FLPET+G L E
Sbjct: 466 VYLGEKWLFLPLVL--------FGGLALLAGILT-LFLPETKGVPLPE 504
Score = 55.8 bits (135), Expect = 4e-08
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 77 VGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAI-GMSSAC 135
+GS G D GRK + L+ + + + S +T+ V R + GM I G+
Sbjct: 142 LGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQA 201
Query: 136 YVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV-TWQYTSAACAVVALVGFAAMH 194
V E R + VF SLG++++ + Y + W++ A ++ + F
Sbjct: 202 VVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSW 261
Query: 195 AVPETPSWLARQG 207
VPE+P WL QG
Sbjct: 262 FVPESPRWLISQG 274
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 57.3 bits (139), Expect = 8e-09
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 5/145 (3%)
Query: 58 SISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTL 117
+S+ A I S + +GSL AG D GR+ + L + F +G ++ + L
Sbjct: 30 GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWL 89
Query: 118 LCVGRFITGMAIGM-SSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVT-- 174
L VGRF+ G+ G A +AE P +RG LG L+ LG ++
Sbjct: 90 LLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES 149
Query: 175 --WQYTSAACAVVALVGFAAMHAVP 197
W++ A++ L+ + +
Sbjct: 150 LGWRWLFLILAILGLLLALLLLFLL 174
Score = 41.1 bits (97), Expect = 0.001
Identities = 30/192 (15%), Positives = 58/192 (30%), Gaps = 16/192 (8%)
Query: 366 SAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAG--SSLDDYVASIIVAGLRFFMAI 423
+L+ F + G Y +L Y + ++ S+ + + + A+
Sbjct: 170 LLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGAL 229
Query: 424 IGSACIQMFSRR-ALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVC 482
+G RR L AL + + + L L +
Sbjct: 230 LGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-------------PSLALLLVALLLLG 276
Query: 483 ASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWA 542
+ + +EL P RG G+ + G L + L+ GG+
Sbjct: 277 FGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLI 336
Query: 543 FSCACLLAMVFI 554
+ LLA + +
Sbjct: 337 LAALALLAALLL 348
Score = 36.1 bits (84), Expect = 0.043
Identities = 31/145 (21%), Positives = 62/145 (42%), Gaps = 6/145 (4%)
Query: 59 ISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPF-IIGWTIITVSKGFTL 117
+S+ +A + SL + +G+L G+ D LGR+ + L + +G ++ ++ L
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267
Query: 118 LCVGRFITGMAIGMSSACYVYVAEICLPNDR-----GYLSAFGPVFVSLGVLIVYSLGYI 172
L V + G +G + + +A P + G + FG + +LG L+ L
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT 327
Query: 173 VTWQYTSAACAVVALVGFAAMHAVP 197
+ A +AL+ + +P
Sbjct: 328 GGYGGVFLILAALALLAALLLLLLP 352
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 55.1 bits (133), Expect = 4e-08
Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 5/140 (3%)
Query: 59 ISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLL 118
IS + + + + + AG D GR+ + + + F +G ++ + LL
Sbjct: 29 ISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLL 88
Query: 119 CVGRFITGMAIG-MSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVT--- 174
V R + G+ G + A +A+ P +RG LG + LG ++
Sbjct: 89 LVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLF 148
Query: 175 -WQYTSAACAVVALVGFAAM 193
W+ A++AL+
Sbjct: 149 GWRAAFLILAILALLAAVLA 168
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 51.5 bits (124), Expect = 7e-07
Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 29/200 (14%)
Query: 69 SLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFT--------LLCV 120
+ G ++ P+G++ G F D +GRK T+ +T + IG +I + + LL +
Sbjct: 42 AAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLL 101
Query: 121 GRFITGMAIGM-SSACYVYVAEICLPNDRGYLSAF----GPVFVSLGVLIVYSLGYIVT- 174
R I G ++G +Y+AE P RG+ +F PV + L L V L Y++
Sbjct: 102 ARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD 161
Query: 175 -------WQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQY 227
W+ AV+ L+G + ETP + Q + I +
Sbjct: 162 DALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE--------KHKKKRGPIAET 213
Query: 228 HIHTWFITGMAIGMSSACYV 247
+ +G+ A
Sbjct: 214 LTKHRKPFLLGLGLVIATTT 233
Score = 38.8 bits (91), Expect = 0.008
Identities = 56/290 (19%), Positives = 99/290 (34%), Gaps = 62/290 (21%)
Query: 233 FITGMAIGM-SSACYVYVAEICLPNDRGYLSAF----GPVFVSLGVLIVYSLGYIVT--- 284
I G ++G +Y+AE P RG+ +F PV + L L V L Y++
Sbjct: 104 LIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDA 163
Query: 285 -----WQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAE 339
W+ AV+ L+G + ETP + Q K+ R +
Sbjct: 164 LLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPI------------- 210
Query: 340 LKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFE 399
A+T T KPF + +G + + Y++ Y +
Sbjct: 211 --------------------AETLTKH--RKPFLLGLG-LVIATTTTFYLITTYLPTYLT 247
Query: 400 DA-GSSLDDYVASIIVAGLRFFMAI-IGSACIQMFSRRALATTSAFFMALSMGISGTYEY 457
G S + + ++++ + FF+ I + A RR + + +
Sbjct: 248 QTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP--------VLIIFTVLAALLA 299
Query: 458 YFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWV-MIAELFPLSVRG 506
+++ D + +L + GM P + ELFP VR
Sbjct: 300 VPLLMALLDSGSFTLFFFLVLGMAL--IGGMYTGPMGSFLPELFPTEVRY 347
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 49.9 bits (120), Expect = 2e-06
Identities = 59/294 (20%), Positives = 101/294 (34%), Gaps = 46/294 (15%)
Query: 58 SISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTL 117
+S A + + + +G+ + L R+ + FI+ + ++ F +
Sbjct: 44 GVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAV 103
Query: 118 LCVGRFITGMAIGMS-SACYVYVAEICLPNDRGYLSAFGPVFVS------LGVLIVYSLG 170
L + R + G+A G+ S A + P RG A VF LGV + LG
Sbjct: 104 LLLARALAGLAHGVFWSIAAALAARLVPPGKRG--RALALVFTGLTLATVLGVPLGTFLG 161
Query: 171 YIVTWQYTSAACAVVALVGFAAM--------------HAVPETPSWLARQG--------- 207
+ W+ T A AV+AL+ + + L R G
Sbjct: 162 QLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLLRRPGVLLGLLATF 221
Query: 208 -MAIGEFRYYLIPSKINILQYHIHTWFITG--MAIGMSSACYVYVAEICLPNDRGYLSAF 264
G F Y ++ +A G++ + G L+
Sbjct: 222 LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLG--------GRLADR 273
Query: 265 GP---VFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLAR 315
GP + +L +L + L T + A A++ L GFA A+ + LAR
Sbjct: 274 GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR 327
Score = 29.9 bits (68), Expect = 4.3
Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 4/138 (2%)
Query: 59 ISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLL 118
S S + I+ +G+L G D R+ + + + + L
Sbjct: 244 FSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLLLALALLALTFTGASPALA 303
Query: 119 CVGRFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVT---- 174
F+ G A + P+ + +LG+ + +LG +V
Sbjct: 304 LALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG 363
Query: 175 WQYTSAACAVVALVGFAA 192
+ T A + L+
Sbjct: 364 YAATGWVGAALLLLALLL 381
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 40.4 bits (95), Expect = 0.002
Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 6/156 (3%)
Query: 58 SISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTL 117
+ ++ S G+I G+LF G D +GR+ + + + F + + ++ T
Sbjct: 48 GLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQ 107
Query: 118 LCVGRFITGMAIG-MSSACYVYVAEICLPNDR----GYLSAFGPVFVSLGVLIVYSLGYI 172
L + RF+ G+ +G + V+E R G + P+ ++G + L +
Sbjct: 108 LLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV 167
Query: 173 VTWQYTSAACAVVALVGFAAMH-AVPETPSWLARQG 207
W+ + L+ + +PE+ +L +
Sbjct: 168 FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR 203
Score = 29.2 bits (66), Expect = 6.6
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 78 GSLFAGIFMDLLGRKTTV---QLTAIPFIIGWTIITVSKGFTLL--CVGRFITGMAIGMS 132
GS+ G D LG + T L A+ ++ + + LL G F+ G G+
Sbjct: 301 GSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGL- 359
Query: 133 SACYVYVAEICLPNDRG 149
Y +A R
Sbjct: 360 ---YALMALFYPTAIRA 373
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 40.3 bits (94), Expect = 0.003
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 57 ISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFT 116
+ ++ + +++A+ I P G G+ D GRK + + + + +G + ++ G
Sbjct: 48 LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVI 107
Query: 117 LLCVGRFITGMAIGMSSAC-YVYVAEICLPNDRGYLSAF 154
+L + RFI GM + AC Y E + + SAF
Sbjct: 108 MLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAF 146
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 39.1 bits (91), Expect = 0.006
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 63 DASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGR 122
DA+ + S +IS G+L G++ D GR+ + + + F G + G+ + + R
Sbjct: 48 DAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIAR 107
Query: 123 FITGMAIGMSSAC-YVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSA 180
+ G+ +G YV E + R S +S Y++G +V Q S
Sbjct: 108 LVIGIGMGGEYGSSAAYVIESWPKHLRNKASGL---LIS-----GYAVGAVVAAQVYSL 158
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 37.2 bits (87), Expect = 0.006
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 73 ISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMS 132
+ + S +G+ D GRK + + F++ + +S T+L + RF+ G +
Sbjct: 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68
Query: 133 -SACYVYVAEICLPNDR----GYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVAL 187
A +A+I P +R G +SA + LG + L + W+ A++AL
Sbjct: 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL 128
Query: 188 VGFAAM 193
F +
Sbjct: 129 AAFILL 134
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 38.5 bits (90), Expect = 0.008
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 38 LTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQL 97
+ ILIP L++ + ++ +AS I + SL AG+ + LG K + L
Sbjct: 27 FITCLNDILIPHLKE---VFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVL 83
Query: 98 TAIPFIIGWTII---TVSKGFTLLCVGRFITGMAIG 130
+ + +G + SK + V FI IG
Sbjct: 84 GLLLYAVGAALFWPAASSKSYGFFLVALFILASGIG 119
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 38.0 bits (88), Expect = 0.015
Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 22/171 (12%)
Query: 57 ISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTT--VQLTAIPFIIGWTIITVSKG 114
+ I + + + VG+ F G D LGRK + L+ F ++ G
Sbjct: 197 LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYG 256
Query: 115 FTLLCVGRFITGMAIGMS-SACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIV 173
F L C R ++G IG + + Y AE RG ++ +F +G + ++ + +
Sbjct: 257 FFLFC--RLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI 314
Query: 174 -----------------TWQYTSAACAVVALVGFAAMHAVPETPSWLARQG 207
+W+ CA + A+ +PE+P + G
Sbjct: 315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENG 365
Score = 31.9 bits (72), Expect = 1.3
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 19/157 (12%)
Query: 57 ISISSDD--ASWI---ASLGVISTPVGSLFAGIFMDLLGRKT----TVQLTAIPFIIGWT 107
I DD A I LG ++ G++ + + MD +GR ++ L+ I
Sbjct: 585 IDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSF 644
Query: 108 IITVSKGFTLLCVGRFITGMAIGMSSACYVYVAEICLPNDR-----GYLSAFGPVFVSLG 162
+ S LLC+ G++I +A V E+ P+D+ G+L+A LG
Sbjct: 645 GNSESAMIALLCL---FGGLSIAAWNALDVLTVEL-YPSDKRATAFGFLNALCKAAAVLG 700
Query: 163 VLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPET 199
+LI S I A A +A G A+ +P+T
Sbjct: 701 ILIFGSFVGITKAAPILFASAALACGGLLALK-LPDT 736
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 36.9 bits (86), Expect = 0.026
Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 20/182 (10%)
Query: 36 NNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTV 95
N L A S P LQ+ + +S+ ++ S VG G +D G + T+
Sbjct: 6 NYLDRANLSFAAPMLQED---LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTL 62
Query: 96 QLTAIPFIIGWTIITVSKGF----TLLCVGRFITGMAIGMSSACYV-YVAEICLPNDRGY 150
+ FI+ W + T + F L + R + G A + VA ++R
Sbjct: 63 AV----FIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERAT 118
Query: 151 LSAFGPVFVSLGVLI----VYSLGYIVTWQY----TSAACAVVALVGFAAMHAVPETPSW 202
+ LG +I V + +WQ+ + ++ + P+ W
Sbjct: 119 AVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKW 178
Query: 203 LA 204
L
Sbjct: 179 LT 180
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 36.6 bits (85), Expect = 0.041
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 497 AELFPLSVR----------GIMGGIVCSLGYLFIFT---TVKMYPDLMYLLNMGGMMWAF 543
E+FP R G G I+ G+L++ K YP ++ MG ++ F
Sbjct: 418 GEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW---MGHVLEIF 474
Query: 544 SCACLLAMVFIQAFLPETQGKTLLEIEN 571
+ L ++F +PET+GK+L E+
Sbjct: 475 ALFMFLGILF-TLLIPETKGKSLEELSG 501
Score = 29.3 bits (66), Expect = 7.0
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 73 ISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKG------FTLLCVGRFITG 126
I T G LF G D LGRK + I II +S G LC RF G
Sbjct: 67 IGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLG 126
Query: 127 MAIG 130
+ IG
Sbjct: 127 VGIG 130
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 34.3 bits (79), Expect = 0.16
Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 21/177 (11%)
Query: 38 LTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQL 97
L ++ +P L I +S D + S I+ + G D R
Sbjct: 9 LVRKNFALAMPYLV---EEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSD---RSNPRVF 62
Query: 98 TAIPFIIGWTIITV----SKGFTLLCVGRFITGMAIGM-SSACYVYVAEICLPNDRGYLS 152
I +I I+ + S ++ + G+ GM C V + ++RG
Sbjct: 63 LPIG-LILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWV 121
Query: 153 AF-------GPVFVSLGVLIVYSLGYIVTWQYTSAACA--VVALVGFAAMHAVPETP 200
+F G + VL + Y W + +V+L+ F + P++
Sbjct: 122 SFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC 178
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 33.9 bits (78), Expect = 0.27
Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 9/151 (5%)
Query: 64 ASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRF 123
A+ + S IS G L G D GR+ + ++ + F +G + G+ L + R
Sbjct: 57 AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARL 116
Query: 124 ITGMAI-GMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLI---VYSLGYIV---TWQ 176
+ GM + G + YV E + R S F S+G ++ VYS +V W+
Sbjct: 117 VIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYS--LVVPVWGWR 174
Query: 177 YTSAACAVVALVGFAAMHAVPETPSWLARQG 207
+ + +PE W +
Sbjct: 175 ALFFIGILPIIFALWLRKNLPEAEDWKEKHA 205
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 33.4 bits (77), Expect = 0.37
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 265 GPVFVSLG---VLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKE 321
G +SLG V+ + + A+ GF HA+P WL G T
Sbjct: 250 GDAMMSLGTSGVVYAVTDKPLPDPA--------GAVHGFC--HALPGG--WLP-MGVTLS 296
Query: 322 ARNSLVWFRRSTAVADAE--LKEIQQS 346
A +SL WFR D E + +QS
Sbjct: 297 ATSSLEWFRELFGKEDVEALNELAEQS 323
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 32.2 bits (74), Expect = 0.76
Identities = 28/184 (15%), Positives = 65/184 (35%), Gaps = 16/184 (8%)
Query: 145 PNDRGYLSAFGPVFVSLGVLIVYSL-GYIVT----------WQYTSAACAVVALVGFAAM 193
P +R L+++ + ++G L+V + +V + + A++A+VGF
Sbjct: 132 PKERTSLASYRRIGATIGGLLVAVIAPPLVALLGGGNGAKGYFLAALIIAILAVVGFLIC 191
Query: 194 HAVPETPSWLARQGMAIGEFRYYLIPSKIN-ILQYHIHTWFITGMAIGMSSACYVYVAEI 252
A + + + R N L + + + +A+ + + +Y
Sbjct: 192 FAGTKERVSVPPEQKEKVSLRDMFKALFKNRPLLILLLLYLLNALAMAVRNGLLLYYFTY 251
Query: 253 CLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTW---QYTSAACAVVALVGFAAMHAVPET 309
L + G S + +L ++ + T ++A +G + +P
Sbjct: 252 VL-GNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPG 310
Query: 310 PSWL 313
WL
Sbjct: 311 SLWL 314
Score = 31.0 bits (71), Expect = 2.1
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 60 SSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTI--ITVSKGFTL 117
++ S + +G I+ +G+ G+K T L + IG + L
Sbjct: 255 NAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWL 314
Query: 118 LCVGRFITGMAIGMSSAC 135
V + G+ +G+++
Sbjct: 315 FLVLVVLAGIGLGLATLL 332
>gnl|CDD|188997 cd06459, M3B_PepF, Peptidase family M3B Oligopeptidase F (PepF).
Peptidase family M3B Oligopeptidase F (PepF;
Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and
includes oligoendopeptidase F from Lactococcus lactis.
This enzyme hydrolyzes peptides containing between 7 and
17 amino acids with fairly broad specificity. The PepF
gene is duplicated in L. lactis on the plasmid that
bears it, while a shortened second copy is found in
Bacillus subtilis. Most bacterial PepFs are cytoplasmic
endopeptidases; however, the PepF Bacillus
amyloliquefaciens oligopeptidase is a secreted protein
and may facilitate the process of sporulation.
Specifically, the yjbG gene encoding the homolog of the
PepF1 and PepF2 oligoendopeptidases of Lactococcus
lactis has been identified in Bacillus subtilis as an
inhibitor of sporulation initiation when over expressed
from a multicopy plasmid.
Length = 450
Score = 31.7 bits (72), Expect = 1.2
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 370 KPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVASIIVAGLRFFMAIIGSACI 429
+P F F+++ G + E+ S+L DYV + G R + + SA +
Sbjct: 375 QPHFYTDPFYVYDYTFGQVCAFQFYKRALEEGASALRDYVELLRAGGSRPPLELAKSAGL 434
Query: 430 QM 431
M
Sbjct: 435 DM 436
>gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional.
Length = 434
Score = 31.1 bits (71), Expect = 1.7
Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 32/134 (23%)
Query: 76 PVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFT--------LLCVGRFITGM 127
P+G++ G ++D +GR+ + +T G +I G+ L+ +GR + G
Sbjct: 70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGF 129
Query: 128 AIGMSS-ACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVV- 185
+ G+ VY+AEI P + G+ +WQ S AVV
Sbjct: 130 SAGVELGGVSVYLAEIATPGRK---------------------GFYTSWQSASQQVAVVF 168
Query: 186 -ALVGFAAMHAVPE 198
AL+G+ +
Sbjct: 169 AALLGYLLNQWLSP 182
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 30.7 bits (70), Expect = 2.1
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 66 WIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFIT 125
W S G++ G+L G D +GRK + ++ F + + F L V R +T
Sbjct: 54 WAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLT 113
Query: 126 GMAIG 130
G+ +G
Sbjct: 114 GVGLG 118
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 30.8 bits (70), Expect = 2.1
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 80 LFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSACYV 137
LFAG D GRK A FII + ++++ +L GRF+ G+ G CYV
Sbjct: 56 LFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAG---CCYV 110
>gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12). This
family consists of several fungal specific trichothecene
efflux pump proteins. Many of the genes involved in
trichothecene toxin biosynthesis in Fusarium
sporotrichioides are present within a gene cluster.It
has been suggested that TRI12 may play a role in F.
sporotrichioides self-protection against trichothecenes.
Length = 598
Score = 30.0 bits (67), Expect = 3.9
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Query: 61 SDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFTLLCV 120
S++ ++L + V L G D GR+ V T I ++G + + F L
Sbjct: 77 SENQGLFSTLWTMGQAVSILMMGRLTDRFGRRPFVIATHIIGLVGAIVGCTANKFNTLLA 136
Query: 121 GRFITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSLG 170
+ G+A G + A +++ E+ + N +L G + VS + + G
Sbjct: 137 AMTLLGVAAGPAGASPLFIGEL-MSNKTKFL---GLLIVSAPTIAMNGAG 182
>gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter;
Provisional.
Length = 490
Score = 30.1 bits (68), Expect = 3.9
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 28/163 (17%)
Query: 67 IASLGVISTP-----VGSLFAGIFMDLLGRKTTVQLTAI-----PFIIGWTIITVSKGF- 115
IA+L S P +G LF G+ D GR+ + +T + F IG + G
Sbjct: 57 IAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIW 116
Query: 116 --TLLCVGRFITGMAIGMS-SACYVYVAEICLPNDRGYLSA---FGPV--FVSLGVLIVY 167
LL + + G ++G + ++VAE RG++ + FG + FV LG +V
Sbjct: 117 APILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFV-LGAGVVV 175
Query: 168 SLGYIV--------TWQYTSAACAVVALVGFAAMHAVPETPSW 202
+ IV W+ + ++G HA+ ETP++
Sbjct: 176 LISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAF 218
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 29.4 bits (66), Expect = 6.2
Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 25/167 (14%)
Query: 71 GVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSKGFT--------LLCVGR 122
G + P+G G D GRK ++ ++ G +I G+ LL + R
Sbjct: 72 GFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLAR 131
Query: 123 FITGMAIG---MSSACYVYVAEICLPNDRGYLSAFGPVFVS----LGVLIVYSLGYIVT- 174
G+++G +SA Y++E+ + +G+ ++F V + L +L+V L +
Sbjct: 132 LFQGLSVGGEYGTSA--TYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLED 189
Query: 175 -------WQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFR 214
W+ A AV+A+V + ET R G +
Sbjct: 190 AELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRALKEAGSLK 236
>gnl|CDD|219020 pfam06422, PDR_CDR, CDR ABC transporter. Corresponds to a region
of the PDR/CDR subgroup of ABC transporters comprising
extracellular loop 3, transmembrane segment 6 and linker
region.
Length = 102
Score = 27.5 bits (62), Expect = 7.1
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 362 TFTNSAVWKPFFILIGFFLFQEASGMYIVLY-YAVNFFEDAGSS 404
++ S +W+ F ILI F++F ++ LY A + A
Sbjct: 42 GYSYSHLWRNFGILIAFWVF------FLALYLLATEYISSAKGK 79
>gnl|CDD|182309 PRK10213, nepI, ribonucleoside transporter; Reviewed.
Length = 394
Score = 29.1 bits (65), Expect = 7.3
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 12/151 (7%)
Query: 67 IASLGVISTPVGSLFAGIFMDLL----GRKTTVQLTAIPFIIGWTIITVSKGFTLLCVGR 122
+A V T ++FA +F+ R+ V L A+ + +++ + F+LL +GR
Sbjct: 56 VAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGR 115
Query: 123 FITGMAIGMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYS------LGYIVTWQ 176
G+A+G A + +P R A +F ++ + +V + LG ++ W+
Sbjct: 116 ACLGLALGGFWAMSASLTMRLVP-PRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWR 174
Query: 177 YTSAACAVVA-LVGFAAMHAVPETPSWLARQ 206
A AV+ L F + ++P P + Q
Sbjct: 175 NVFNAAAVMGVLCIFWIIKSLPSLPGEPSHQ 205
>gnl|CDD|222573 pfam14158, YndJ, YndJ-like protein. The YndJ-like protein family
includes the B. subtilis YndJ protein, which is
functionally uncharacterized. This family is found in
bacteria and archaea, and is typically between 222 and
269 amino acids in length. There are two completely
conserved G residues that may be functionally important.
Length = 261
Score = 29.0 bits (65), Expect = 7.9
Identities = 26/111 (23%), Positives = 38/111 (34%), Gaps = 18/111 (16%)
Query: 95 VQLTAIPFIIGWTIITVSKGFTLLCVGRFITGMAIGMSSACYVYVAEICLPNDRGYLSAF 154
V LTA F + + G G A+ S Y A+ L
Sbjct: 125 VLLTAAHFHYSAFALPIFAGLL---------GRALRKKSRLYRLRAQKIL---------L 166
Query: 155 GPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLAR 205
GPV +++G+ + +L Y +A A LV A P+ L R
Sbjct: 167 GPVLIAVGITLSRTLEVFAVGLYAAALYAAGTLVWRRARSFRPQVALLLLR 217
Score = 28.6 bits (64), Expect = 9.6
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 263 AFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLAR 315
GPV +++G+ + +L Y +A A LV A P+ L R
Sbjct: 165 LLGPVLIAVGITLSRTLEVFAVGLYAAALYAAGTLVWRRARSFRPQVALLLLR 217
>gnl|CDD|217865 pfam04054, Not1, CCR4-Not complex component, Not1. The Ccr4-Not
complex is a global regulator of transcription that
affects genes positively and negatively and is thought
to regulate transcription factor TFIID.
Length = 375
Score = 28.7 bits (65), Expect = 9.0
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 212 EFRYYLIPSKINILQY-HIHTWF 233
E RYYL+ + N L+Y + HT +
Sbjct: 273 EGRYYLLNAIANQLRYPNSHTHY 295
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 28.8 bits (65), Expect = 9.6
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 14/140 (10%)
Query: 360 AQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVASIIVAGLRF 419
F N +P +L+ L + + + ++ + A +++
Sbjct: 230 LLIFKN----RPLLLLLLMNLL--LFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLAS-G 282
Query: 420 FMAIIGSACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILA 479
+IG ++ F + L + G YF + I +A I+A
Sbjct: 283 AGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVGYLLLYF----TPAGSVVLIVVALIIA 337
Query: 480 NVCASMLGMLQLPWVMIAEL 499
V + LPW M+A+
Sbjct: 338 GVGTGIANP--LPWAMVADT 355
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.138 0.431
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,483,757
Number of extensions: 3147927
Number of successful extensions: 4632
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4514
Number of HSP's successfully gapped: 198
Length of query: 607
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 504
Effective length of database: 6,369,140
Effective search space: 3210046560
Effective search space used: 3210046560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (27.6 bits)