RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10231
(607 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 3e-08
Identities = 94/500 (18%), Positives = 153/500 (30%), Gaps = 184/500 (36%)
Query: 38 LTH-AI-PSILIP--------QLQK------PSSIISISSDD-----ASWIAS-LGVIST 75
L+H ++ +L+P QLQ+ P ++DD A + LG +S+
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 76 PVGSLFAGIFMDLLGRKTTVQLTAI--PFIIGWTI------ITVSKGFTLLCVGRFITGM 127
V G F +L + LT ++ G I + TL+ I
Sbjct: 71 LVEPSKVGQFDQVL----NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK-- 124
Query: 128 AIGMSSACYVYVAEICL--PNDRGYLSAFGPVF--VSLGVLIVYSL----GYIVTW---- 175
Y A I P D+ SA F V G + ++ G +
Sbjct: 125 -------NY-ITARIMAKRPFDKKSNSAL---FRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 176 --QYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKINILQYHIHTWF 233
Y + V L+ F+A L R + + + +NIL+ W
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSE-----LIRT--TLDAEKVF--TQGLNILE-----W- 218
Query: 234 ITGMAIGMSSACYVYVAEICLPN---DRGYLSAFGPVFVSLGVLIVYSLG-YIVTWQY-- 287
+ P+ D+ YL + + +S ++ V L Y+VT +
Sbjct: 219 LEN------------------PSNTPDKDYLLS---IPISCPLIGVIQLAHYVVTAKLLG 257
Query: 288 -------------TSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVW--FR-- 330
T + +V A A+ ET SW + ++A L + R
Sbjct: 258 FTPGELRSYLKGATGHSQGLVT----AV--AIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 331 RSTAVADAELKEIQQSLKVQMAG-SSM------------DHCAQTFTNSAVWKPFFILIG 377
+ ++ SL+ S M D+ +T NS + P
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT--NSHL--P------ 361
Query: 378 FFLFQEASGMYIVLYYAVNFFEDAGSSLDDYVASIIVAG-----------LRFFMAIIGS 426
+ I L VN + V V+G LR A S
Sbjct: 362 -----AGKQVEISL---VN-------GAKNLV----VSGPPQSLYGLNLTLRKAKA--PS 400
Query: 427 ACIQM---FSRRALATTSAF 443
Q FS R L ++ F
Sbjct: 401 GLDQSRIPFSERKLKFSNRF 420
Score = 49.7 bits (118), Expect = 3e-06
Identities = 47/231 (20%), Positives = 78/231 (33%), Gaps = 51/231 (22%)
Query: 375 LIGFFL-F------QEASGMYI-VLYYAVNFFEDA---GSSLDDYVASIIV---AGLRFF 420
L+G FL + G + VL + FE+ G+ + A ++ L
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 421 MAIIGS---ACIQMFSRRALATTSAFFMALSMGIS---------GTYEYYFSELSMDDRP 468
+I + A I + SA F A+ G + G + YF EL R
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL----RD 175
Query: 469 LNWI--PLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKM 526
L L L A L L + ++F +G+ L +L
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT---QGLN-----ILEWL---ENPSN 224
Query: 527 YPDLMYLLNMGGMMWAFSC--ACLLAMVFIQAFLPETQGKTLLEIENHFRG 575
PD YLL++ SC ++ + + G T E+ ++ +G
Sbjct: 225 TPDKDYLLSI-----PISCPLIGVIQLAHYVVTA-KLLGFTPGELRSYLKG 269
Score = 47.4 bits (112), Expect = 2e-05
Identities = 58/370 (15%), Positives = 97/370 (26%), Gaps = 126/370 (34%)
Query: 183 AVVALV----GFAAMHAVPETPSWLARQ--GMAIGEF-RYYLIPSKINILQYHIHTWFIT 235
LV G+ + V + Q + + EF YL +I H
Sbjct: 56 TPAELVGKFLGYVS-SLVEPSKVGQFDQVLNLCLTEFENCYL--EGNDI-----HA-LAA 106
Query: 236 GMAIGMSSA---------CYVYVAEICL--PNDRGYLSAFGPVF--VSLGVLIVYSL--- 279
+ + Y A I P D+ SA F V G + ++
Sbjct: 107 KLLQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSAL---FRAVGEGNAQLVAIFGG 162
Query: 280 -GYIVTW------QYTSAACAVVALVGFAAMH-----AVPETPSWLARQGCTKEARNSLV 327
G + Y + V L+ F+A + QG N L
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-----NILE 217
Query: 328 WFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPF-FILIGFFLFQEASG 386
W + D + + S P LIG + Q A
Sbjct: 218 WLENPSNTPDKD-----------------------YLLSI---PISCPLIG--VIQLAH- 248
Query: 387 MYIVLYYAVNF----FEDAGSSLDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATT-S 441
Y+V + F + ++ A I A +
Sbjct: 249 -YVVTAKLLGFTPGELRSYLKGATGHSQGLVTA-----------VAI------AETDSWE 290
Query: 442 AFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILA-NVCASMLGMLQLPWVMIAELF 500
+FF+++ I F +I + C A + +L+ + E
Sbjct: 291 SFFVSVRKAI----TVLF-----------FIGVRCYEAYPNTSLPPSILEDS-LENNEGV 334
Query: 501 P---LSVRGI 507
P LS+ +
Sbjct: 335 PSPMLSISNL 344
Score = 38.5 bits (89), Expect = 0.008
Identities = 47/267 (17%), Positives = 76/267 (28%), Gaps = 82/267 (30%)
Query: 344 QQSLKVQMAGSSMDHCAQTFTNSAVW----KPFFILIGF--------------FLFQEAS 385
Q S Q G MD + VW F GF F
Sbjct: 1624 QGS---QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 386 GMYIVLYYAVNFFEDAG----------SSLDDYVASIIVAG----LRF--F----MAIIG 425
G I Y+ FE ++++ S L F + ++
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 426 SACIQMFSRRALATTSAFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASM 485
A + + L A F S+G EY + LA + A+V
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLG-----EY--A------------ALASL-ADV---- 1776
Query: 486 LGMLQLPWVMIAELFPLSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSC 545
+ + E+ + RG+ + + M +N G + +FS
Sbjct: 1777 -----MSIESLVEV--VFYRGMTMQVAVPRD------ELGRSNYGMIAINPGRVAASFSQ 1823
Query: 546 ACLLAMVFIQAFLPETQGKTLLEIENH 572
L +V + T L+EI N+
Sbjct: 1824 EALQYVV--ERVGKRTGW--LVEIVNY 1846
Score = 37.3 bits (86), Expect = 0.017
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 16/53 (30%)
Query: 168 SLGYIVTWQYTS-AACA-------VVALV---GFAAMHAVPETPSWLARQGMA 209
SLG +Y + A+ A +V +V G AVP + GM
Sbjct: 1763 SLG-----EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Score = 33.9 bits (77), Expect = 0.18
Identities = 22/99 (22%), Positives = 31/99 (31%), Gaps = 40/99 (40%)
Query: 278 SLGYIVTWQYTS-AACA-------VVALV---GFAAMHAVPE-------------TPSWL 313
SLG +Y + A+ A +V +V G AVP P +
Sbjct: 1763 SLG-----EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 314 ARQGCTKEARNSLVWFRRSTAVADAELKEI-------QQ 345
A ++EA +V L EI QQ
Sbjct: 1818 A-ASFSQEALQYVV---ERVGKRTGWLVEIVNYNVENQQ 1852
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 0.002
Identities = 38/273 (13%), Positives = 75/273 (27%), Gaps = 77/273 (28%)
Query: 335 VADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYA 394
V + + K++Q K ++ +DH + L L ++ +
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV---SGTLRLFWTLLSKQEEMVQ------ 80
Query: 395 VNFFEDAGSSLDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAFFMALSMGISGT 454
F E+ +Y +F M+ I + Q ++ T
Sbjct: 81 -KFVEEVLR--INY---------KFLMSPIKTEQRQ----PSMMTRM------------- 111
Query: 455 YEYYFSELSMDDRPLNWIPLACILANVC-ASMLGMLQLPWVMIAELFP---LSVRGIMGG 510
Y L D++ NV L+ + EL P + + G + G
Sbjct: 112 YIEQRDRLYNDNQVF--AKY-----NVSRLQPYLKLRQ---ALLELRPAKNVLIDG-VLG 160
Query: 511 I--------VCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCAC---LLAMVFIQAFLP 559
VC + ++ LN+ +C +L M +Q L
Sbjct: 161 SGKTWVALDVCL-----SYKVQCKMDFKIFWLNLK------NCNSPETVLEM--LQKLLY 207
Query: 560 ETQGKTLLEIENHFRGKKNMADSTEHLEKGFHQ 592
+ ++ K + L +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 34.6 bits (80), Expect = 0.093
Identities = 55/305 (18%), Positives = 91/305 (29%), Gaps = 53/305 (17%)
Query: 232 WFITGMAIGMS-SACYVYVAEICLPNDRGYLSA-------FGPVFVSLGVLIVYSLGYIV 283
F+ G GM C + +RG + + G L L + + +
Sbjct: 126 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPL--LFLLGMAWFN 183
Query: 284 TWQY----TSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNSLVWFRRSTAVADAE 339
W + +VAL FA M P++ G + A+ E
Sbjct: 184 DWHAALYMPAFCAILVALFAFAMMRDTPQSC------GLPPIEEYKNDYPDDYNEKAEQE 237
Query: 340 LKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEASGMYIVLYYAVNFFE 399
L Q ++ N +W +I I Y +L ++ + +
Sbjct: 238 LTAKQIFMQ------------YVLPNKLLW---YIAIANVFVYLLR--YGILDWSPTYLK 280
Query: 400 DA-GSSLDDYVASIIVAGLRFFMAIIGSACIQMFS----RRALATTSAFFMALSMGISGT 454
+ +LD S L + I G+ S R T FFM L +
Sbjct: 281 EVKHFALDK---SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV 337
Query: 455 YEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRGIMGGIVCS 514
Y + + ++ I + I + G + L + EL P G G
Sbjct: 338 YWMNPA----GNPTVDMICMIVIGF----LIYGPVMLIGLHALELAPKKAAGTAAGFTGL 389
Query: 515 LGYLF 519
GYL
Sbjct: 390 FGYLG 394
Score = 28.9 bits (65), Expect = 6.2
Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 13/146 (8%)
Query: 59 ISSDDASWIASLGVISTPVGSLFAGIFMDLL--GRKTTVQLTAIPFIIG-----WTIITV 111
+ D +SW L + G+L G D + G + + + + W
Sbjct: 285 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG 344
Query: 112 SKGFTLLCVGRFITGMAI-GMSSACYVYVAEICLPNDRGYLSAFGPVFVSLGVLIVYSL- 169
+ ++C+ + G I G ++ E+ G + F +F LG + S
Sbjct: 345 NPTVDMICM--IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI 402
Query: 170 -GYIV-TWQYTSAACAVVALVGFAAM 193
GY V + + ++ A +
Sbjct: 403 VGYTVDFFGWDGGFMVMIGGSILAVI 428
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 34.1 bits (78), Expect = 0.13
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 38 LTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQL 97
+ + + IL+PQ Q+ ++++ A I S + + AGI M L K +
Sbjct: 40 VANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT 96
Query: 98 TAIPFIIGWTII---TVSKGFTLLCVGRFITGMAIGM 131
+ +G + +TL VG FI +G
Sbjct: 97 GLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGC 133
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.29
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 339 ELKEIQQSLKVQMAGSS 355
LK++Q SLK+ S+
Sbjct: 21 ALKKLQASLKLYADDSA 37
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif,
systemic lupus erythematosus, phosphoprotein, RNA
maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1
PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Length = 193
Score = 31.0 bits (69), Expect = 0.76
Identities = 18/128 (14%), Positives = 32/128 (25%), Gaps = 26/128 (20%)
Query: 456 EYYFSE--LSMD-------DRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLSVRG 506
EYYF + L D W+PL ++ + L + +I E S
Sbjct: 21 EYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTT---DFNVIVEALSKSKAE 77
Query: 507 IMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQGKTL 566
+M T ++ P + F +
Sbjct: 78 LMEISED-------KTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLD------ 124
Query: 567 LEIENHFR 574
+I+
Sbjct: 125 -DIKEWLE 131
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.138 0.431
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,427,881
Number of extensions: 575409
Number of successful extensions: 1258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1255
Number of HSP's successfully gapped: 33
Length of query: 607
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 508
Effective length of database: 3,937,614
Effective search space: 2000307912
Effective search space used: 2000307912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.1 bits)