RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10231
(607 letters)
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 40.4 bits (93), Expect = 5e-04
Identities = 23/167 (13%), Positives = 48/167 (28%), Gaps = 9/167 (5%)
Query: 35 CNNLTHAIPSILIPQLQKPSSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTT 94
L ++ +P L + S D + S I+ G D +
Sbjct: 36 AYYLVRKNFALAMPYLVE----QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF 91
Query: 95 VQ----LTAIPFIIGWTIITVSKGFTLLCVGRFITGMA-IGMSSACYVYVAEICLPNDRG 149
+ L A + + + ++ V F+ G C + +RG
Sbjct: 92 LPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERG 151
Query: 150 YLSAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAV 196
+ + ++G I L + + A+ A + A+
Sbjct: 152 GIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL 198
Score = 39.7 bits (91), Expect = 8e-04
Identities = 43/368 (11%), Positives = 91/368 (24%), Gaps = 26/368 (7%)
Query: 207 GMAIGEFRYYLIPSKINILQYHIHTWFITGMA-IGMSSACYVYVAEICLPNDRGYLSAFG 265
A +P + + F+ G C + +RG + +
Sbjct: 98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVW 157
Query: 266 PVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKEARNS 325
++G I L + + A+ A + A+ A
Sbjct: 158 NCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALF--------------AFAM 203
Query: 326 LVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLFQEAS 385
+ +S + E + Q F + I
Sbjct: 204 MRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYL 263
Query: 386 GMYIVLYYAVNFFEDAG--SSLDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTSAF 443
Y +L ++ + ++ + A + ++ R T F
Sbjct: 264 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVF 323
Query: 444 FMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFPLS 503
FM L + Y + N + + + G + L + EL P
Sbjct: 324 FMTLVTIATIVYWMNPA--------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK 375
Query: 504 VRGIMGGIVCSLGYLF-IFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPETQ 562
G G GYL + + G +LA++ + + +
Sbjct: 376 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 435
Query: 563 GKTLLEIE 570
+ ++
Sbjct: 436 RRHEQLLQ 443
Score = 29.3 bits (64), Expect = 1.5
Identities = 28/362 (7%), Positives = 82/362 (22%), Gaps = 7/362 (1%)
Query: 202 WLARQGMAIGEFRYYLIPSKINILQYHIHTWFITGMAIGMSSACYVYVAEICLPNDRGYL 261
W G+ G YYL+ + ++ + +G + +
Sbjct: 24 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVS 83
Query: 262 SAFGPVFVSLGVLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGCTKE 321
P LI+ + + A ++ + + + W
Sbjct: 84 DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 143
Query: 322 ARNSLVWFRRSTAVADAELKEIQQSLKVQMAGSSMDHCAQTFTNSAVWKPFFILIGFFLF 381
+ + A + + G + + + + + F
Sbjct: 144 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 203
Query: 382 QEASGMYIVLYYAVNFFEDAGSSLDDYVASIIVAGLRFFMAIIGSACIQMFSRRALATTS 441
+ L + D ++ + A F ++ ++
Sbjct: 204 MRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP-------NKLLWYIAI 256
Query: 442 AFFMALSMGISGTYEYYFSELSMDDRPLNWIPLACILANVCASMLGMLQLPWVMIAELFP 501
A + + L+ A L +L
Sbjct: 257 ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN 316
Query: 502 LSVRGIMGGIVCSLGYLFIFTTVKMYPDLMYLLNMGGMMWAFSCACLLAMVFIQAFLPET 561
G+ + ++ + + P + + + + L+ + ++ +
Sbjct: 317 RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA 376
Query: 562 QG 563
G
Sbjct: 377 AG 378
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 32.4 bits (72), Expect = 0.13
Identities = 24/206 (11%), Positives = 52/206 (25%), Gaps = 11/206 (5%)
Query: 54 SSIISISSDDASWIASLGVISTPVGSLFAGIFMDLLGRKTTVQLTAIPFIIGWTIITVSK 113
I IS D I + + + + G+ D LG + + ++ + +
Sbjct: 35 HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI 94
Query: 114 GFTLLCVGRFITGMAIGMSSACYVYVAEICLPND-----------RGYLSAFGPVFVSLG 162
LL + + G+ + G FG V +LG
Sbjct: 95 FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALG 154
Query: 163 VLIVYSLGYIVTWQYTSAACAVVALVGFAAMHAVPETPSWLARQGMAIGEFRYYLIPSKI 222
IV + I ++ A + PS + + +
Sbjct: 155 ASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLAL 214
Query: 223 NILQYHIHTWFITGMAIGMSSACYVY 248
+ + + + +
Sbjct: 215 ELFRQPKLWFLSLYVIGVSCTYDVFD 240
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
Length = 139
Score = 26.0 bits (56), Expect = 8.1
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 11/77 (14%)
Query: 281 YIVTWQYTSAACAVVALVGFAAMHAVPET-----PSWLARQGCTKEARNSLVWFRRSTAV 335
+ ++ + G A +V P + K VW +
Sbjct: 69 RAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRY------GKGDGFGAVWKTHADDY 122
Query: 336 ADAELKEIQQSLKVQMA 352
+L+ I S+ ++A
Sbjct: 123 KPEDLQNISSSIAKRLA 139
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.138 0.431
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,270,841
Number of extensions: 103308
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 11
Length of query: 607
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 516
Effective length of database: 1,158,166
Effective search space: 597613656
Effective search space used: 597613656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.1 bits)