BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10233
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 54 ISKIENLDAQTEM----RSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLP- 108
I IE +DA + + + N ++ + +LS M+ L ++L N I+KIENL +
Sbjct: 34 IPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVAD 93
Query: 109 VLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
L L +S+N++ ++ IE L + L ++ +S+N+I + I+ A+ +L L L+ N
Sbjct: 94 TLEELWISYNQIASLSGIEKLVN---LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
Query: 169 PCVGKIK------NYRRMFINLCVNLRHLDDYPVFDKDRKCA 204
P K YR + NL+ LD PV +R+ A
Sbjct: 151 PLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQA 192
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 54 ISKIENLDAQTEM----RSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLP- 108
I IE +DA + + + N ++ + +LS M+ L ++L N I+KIENL +
Sbjct: 35 IPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVAD 94
Query: 109 VLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
L L +S+N++ ++ IE L + L ++ +S+N+I + I+ A+ +L L L+ N
Sbjct: 95 TLEELWISYNQIASLSGIEKLVN---LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 151
Query: 169 PCVGKIK------NYRRMFINLCVNLRHLDDYPVFDKDRKCA 204
P K YR + NL+ LD PV +R+ A
Sbjct: 152 PLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQA 193
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 50 ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
E+NGIS I L ++ S+Y+ +N + + LS + LDT++L N I I L+CL
Sbjct: 115 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLACLTK 174
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
L+ L+LS N + + + LK+ +L +
Sbjct: 175 LQNLYLSKNHISDLRALCGLKNLDVLEL 202
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
LYL T I L T L L LE+N IS I L T+++++Y+ N + + L
Sbjct: 134 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLACLTKLQNLYLSKNHISDLRALCG 193
Query: 85 MQLLDTINL 93
++ LD + L
Sbjct: 194 LKNLDVLEL 202
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 50 ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
E+NGIS I L ++ S+Y+ +N + + LS + LDT++L N I I L+ L
Sbjct: 117 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 176
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
L+ L+LS N + + + LK+ +L +
Sbjct: 177 LQNLYLSKNHISDLRALAGLKNLDVLEL 204
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 13 NKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMH 72
N L P L + LYL T I L T L L LE+N IS I L T+++++Y+
Sbjct: 125 NGLVHLPQL-ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 183
Query: 73 HNLVKVMENLSHMQLLDTINL 93
N + + L+ ++ LD + L
Sbjct: 184 KNHISDLRALAGLKNLDVLEL 204
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 50 ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
E+NGIS I L ++ S+Y+ +N + + LS + LDT++L N I I L+ L
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 179
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
L+ L+LS N + + + LK+ +L +
Sbjct: 180 LQNLYLSKNHISDLRALAGLKNLDVLEL 207
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
LYL T I L T L L LE+N IS I L T+++++Y+ N + + L+
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAG 198
Query: 85 MQLLDTINL 93
++ LD + L
Sbjct: 199 LKNLDVLEL 207
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 23 DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQT--EMRSIYMHHNLVKV-- 78
D+ H G + +E LK L L N ++ ++A + +R +Y+ N+ K+
Sbjct: 283 DLTAAHLNG--LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDL 340
Query: 79 ----MENLSHMQLLDTINLSHNFIEKIE----NLSCLPVLRTLHLSHNRLKTIEDIEHLK 130
+E L ++Q LD LSH+ IE + L L L+ L+LS+N +ED + K
Sbjct: 341 GTRCLEKLENLQKLD---LSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLED-QAFK 396
Query: 131 DCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSH 167
+CP L ++DV+ + + F + LRVL LSH
Sbjct: 397 ECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH 433
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 50 ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
E+NGIS I L ++ S+Y+ +N + + LS + LDT++L N I +I L+ L
Sbjct: 118 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLARLTK 177
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
L+ L+LS N + + + LK+ +L +
Sbjct: 178 LQNLYLSKNHISDLRALRGLKNLDVLEL 205
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 9 ICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRS 68
I N L P L + LYL T I L T L L LE+N I +I L T++++
Sbjct: 122 ISDINGLVHLPQL-ESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLARLTKLQN 180
Query: 69 IYMHHNLVKVMENLSHMQLLDTINL 93
+Y+ N + + L ++ LD + L
Sbjct: 181 LYLSKNHISDLRALRGLKNLDVLEL 205
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 50 ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
E+NGIS I L ++ S+Y+ +N + + LS + LDT++L N I I L+ L
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 179
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
L+ L+LS N + + + LK+ +L +
Sbjct: 180 LQNLYLSKNHISDLRALAGLKNLDVLEL 207
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
LYL T I L T L L LE+N IS I L T+++++Y+ N + + L+
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAG 198
Query: 85 MQLLDTINL 93
++ LD + L
Sbjct: 199 LKNLDVLEL 207
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 50 ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
E+NGIS I L ++ S+Y+ +N + + LS + LDT++L N I I L+ L
Sbjct: 118 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 177
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
L+ L+LS N + + + LK+ +L +
Sbjct: 178 LQNLYLSKNHISDLRALAGLKNLDVLEL 205
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
LYL T I L T L L LE+N IS I L T+++++Y+ N + + L+
Sbjct: 137 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAG 196
Query: 85 MQLLDTINL 93
++ LD + L
Sbjct: 197 LKNLDVLEL 205
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 50 ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
E+NGIS I L ++ S+Y+ +N + + LS + LDT++L N I I L+ L
Sbjct: 138 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 197
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
L+ L+LS N + + + LK+ +L +
Sbjct: 198 LQNLYLSKNHISDLRALAGLKNLDVLEL 225
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 9 ICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRS 68
I N L P L + LYL T I L T L L LE+N IS I L T++++
Sbjct: 142 ISDINGLVHLPQL-ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 200
Query: 69 IYMHHNLVKVMENLSHMQLLDTINL 93
+Y+ N + + L+ ++ LD + L
Sbjct: 201 LYLSKNHISDLRALAGLKNLDVLEL 225
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 50 ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
E+NGIS I L ++ S+Y+ +N + + LS + LDT++L N I I L+ L
Sbjct: 140 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 199
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
L+ L+LS N + + + LK+ +L +
Sbjct: 200 LQNLYLSKNHISDLRALAGLKNLDVLEL 227
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 62 AQTEMRSI---YMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHN 118
Q E+ SI +++ +K ++ + ++ L ++NLS+N I I + LP + L L+ N
Sbjct: 39 TQNELNSIDQIIANNSDIKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGN 98
Query: 119 RLKTIEDIEHLKD 131
+L I+ + +LK+
Sbjct: 99 KLTDIKPLANLKN 111
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
LYL T I L T L L LE+N IS I L T+++++Y+ N + + L+
Sbjct: 159 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAG 218
Query: 85 MQLLDTINL 93
++ LD + L
Sbjct: 219 LKNLDVLEL 227
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 50 ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
E+NGIS I L ++ S+Y+ +N + + LS + LDT++L N I I L+ L
Sbjct: 138 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 197
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
L+ L+LS N + + + LK+ +L +
Sbjct: 198 LQNLYLSKNHISDLRALAGLKNLDVLEL 225
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
LYL T I L T L L LE+N IS I L T+++++Y+ N + + L+
Sbjct: 157 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAG 216
Query: 85 MQLLDTINL 93
++ LD + L
Sbjct: 217 LKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 50 ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
E+NGIS I L ++ S+Y+ +N + + LS + LDT++L N I I L+ L
Sbjct: 138 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 197
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
L+ L+LS N + + + LK+ +L +
Sbjct: 198 LQNLYLSKNHISDLRALAGLKNLDVLEL 225
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
LYL T I L T L L LE+N IS I L T+++++Y+ N + + L+
Sbjct: 157 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAG 216
Query: 85 MQLLDTINL 93
++ LD + L
Sbjct: 217 LKNLDVLEL 225
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 40 EYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHNFI 98
EY ++ L L + ++ + +L+ + + + HN ++ + L+ ++ L+ + S N +
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
Query: 99 EKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE 152
E ++ ++ LP L+ L L +NRL+ I+ L CP L ++++ N + EE I+
Sbjct: 499 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 40 EYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHNFI 98
EY ++ L L + ++ + +L+ + + + HN ++ + L+ ++ L+ + S N +
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
Query: 99 EKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE 152
E ++ ++ LP L+ L L +NRL+ I+ L CP L ++++ N + EE I+
Sbjct: 499 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 50 ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
E+NGIS I L ++ S+Y+ +N + + LS + LDT++L N I I L+ L
Sbjct: 115 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 174
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
L+ L+LS N + + + LK+ +L +
Sbjct: 175 LQNLYLSKNHISDLRALAGLKNLDVLEL 202
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
LYL T I L T L L LE+N IS I L T+++++Y+ N + + L+
Sbjct: 134 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAG 193
Query: 85 MQLLDTINL 93
++ LD + L
Sbjct: 194 LKNLDVLEL 202
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 38 LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
L + T L+ L NN IS I L T + + ++ N +K + L+ + L ++L++N
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 250
Query: 98 IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
I + LS L L L L N+ I +I L L+ ++++ NQ+ED I +
Sbjct: 251 ISNLAPLSGLTKLTELKLGANQ---ISNISPLAGLTALTNLELNENQLED---ISPISNL 304
Query: 158 PELRVLTLSHN-----PCVGKIKNYRRMF 181
L LTL N V + +R+F
Sbjct: 305 KNLTYLTLYFNNISDISPVSSLTKLQRLF 333
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 19/157 (12%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
L L T I+ L+ T L L L +N IS I L T ++ + N V ++ L++
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLAN 171
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTI-------------------ED 125
+ L+ +++S N + I L+ L L +L ++N++ I +D
Sbjct: 172 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 231
Query: 126 IEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRV 162
I L L+ +D+++NQI + + + EL++
Sbjct: 232 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 38 LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
L + T L+ L NN IS I L T + + ++ N +K + L+ + L ++L++N
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 249
Query: 98 IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
I + LS L L L L N+ I +I L L+ ++++ NQ+ED I +
Sbjct: 250 ISNLAPLSGLTKLTELKLGANQ---ISNISPLAGLTALTNLELNENQLED---ISPISNL 303
Query: 158 PELRVLTLSHN-----PCVGKIKNYRRMF 181
L LTL N V + +R+F
Sbjct: 304 KNLTYLTLYFNNISDISPVSSLTKLQRLF 332
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 24/159 (15%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNL--VKVMENL 82
L L T I+ L+ T L L L +N IS I L T ++ + + + +K + NL
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANL 171
Query: 83 SHMQLLD-------------------TINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTI 123
+ ++ LD ++ ++N I I L L L L L+ N+LK
Sbjct: 172 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-- 229
Query: 124 EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRV 162
DI L L+ +D+++NQI + + + EL++
Sbjct: 230 -DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 38 LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
L + T L+ L NN IS I L T + + ++ N +K + L+ + L ++L++N
Sbjct: 194 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 253
Query: 98 IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
I + LS L L L L N+ I +I L L+ ++++ NQ+ED I +
Sbjct: 254 ISNLAPLSGLTKLTELKLGANQ---ISNISPLAGLTALTNLELNENQLED---ISPISNL 307
Query: 158 PELRVLTLSHN-----PCVGKIKNYRRMF 181
L LTL N V + +R+F
Sbjct: 308 KNLTYLTLYFNNISDISPVSSLTKLQRLF 336
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 24/159 (15%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNL--VKVMENL 82
L L T I+ L+ T L L L +N IS I L T ++ + + + +K + NL
Sbjct: 116 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 175
Query: 83 SHMQLLD-------------------TINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTI 123
+ ++ LD ++ ++N I I L L L L L+ N+LK
Sbjct: 176 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-- 233
Query: 124 EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRV 162
DI L L+ +D+++NQI + + + EL++
Sbjct: 234 -DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 271
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 38 LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
L + T L+ L NN IS I L T + + ++ N +K + L+ + L ++L++N
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 250
Query: 98 IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
I + LS L L L L N+ I +I L L+ ++++ NQ+ED I +
Sbjct: 251 ISNLAPLSGLTKLTELKLGANQ---ISNISPLAGLTALTNLELNENQLED---ISPISNL 304
Query: 158 PELRVLTLSHN-----PCVGKIKNYRRMF 181
L LTL N V + +R+F
Sbjct: 305 KNLTYLTLYFNNISDISPVSSLTKLQRLF 333
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 19/157 (12%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
L L T I+ L+ T L L L +N IS I L T ++ + N V ++ L++
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLAN 171
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTI-------------------ED 125
+ L+ +++S N + I L+ L L +L ++N++ I +D
Sbjct: 172 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 231
Query: 126 IEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRV 162
I L L+ +D+++NQI + + + EL++
Sbjct: 232 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 38 LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
L + T L+ L NN IS I L T + + ++ N +K + L+ + L ++L++N
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 249
Query: 98 IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
I + LS L L L L N+ I +I L L+ ++++ NQ+ED I +
Sbjct: 250 ISNLAPLSGLTKLTELKLGANQ---ISNISPLAGLTALTNLELNENQLED---ISPISNL 303
Query: 158 PELRVLTLSHN-----PCVGKIKNYRRMF 181
L LTL N V + +R+F
Sbjct: 304 KNLTYLTLYFNNISDISPVSSLTKLQRLF 332
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 24/159 (15%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNL--VKVMENL 82
L L T I+ L+ T L L L +N IS I L T ++ + + + +K + NL
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANL 171
Query: 83 SHMQLLD-------------------TINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTI 123
+ ++ LD ++ ++N I I L L L L L+ N+LK
Sbjct: 172 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-- 229
Query: 124 EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRV 162
DI L L+ +D+++NQI + + + EL++
Sbjct: 230 -DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 38 LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
L + T L+ L NN IS I L T + + ++ N +K + L+ + L ++L++N
Sbjct: 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 254
Query: 98 IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
I + LS L L L L N+ I +I L L+ ++++ NQ+ED I +
Sbjct: 255 ISNLAPLSGLTKLTELKLGANQ---ISNISPLAGLTALTNLELNENQLED---ISPISNL 308
Query: 158 PELRVLTLSHN-----PCVGKIKNYRRMF 181
L LTL N V + +R+F
Sbjct: 309 KNLTYLTLYFNNISDISPVSSLTKLQRLF 337
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 24/159 (15%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNL--VKVMENL 82
L L T I+ L+ T L L L +N IS I L T ++ + + + +K + NL
Sbjct: 117 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 176
Query: 83 SHMQLLD-------------------TINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTI 123
+ ++ LD ++ ++N I I L L L L L+ N+LK
Sbjct: 177 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-- 234
Query: 124 EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRV 162
DI L L+ +D+++NQI + + + EL++
Sbjct: 235 -DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 38 LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
L + T L+ L NN IS I L T + + ++ N +K + L+ + L ++L++N
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 250
Query: 98 IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
I + LS L L L L N+ I +I L L+ ++++ NQ+ED I +
Sbjct: 251 ISNLAPLSGLTKLTELKLGANQ---ISNISPLAGLTALTNLELNENQLED---ISPISNL 304
Query: 158 PELRVLTLSHN-----PCVGKIKNYRRMF 181
L LTL N V + +R+F
Sbjct: 305 KNLTYLTLYFNNISDISPVSSLTKLQRLF 333
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 19/157 (12%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
L L T I+ L+ T L L L +N IS I L T ++ + N V ++ L++
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLAN 171
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTI-------------------ED 125
+ L+ +++S N + I L+ L L +L ++N++ I +D
Sbjct: 172 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 231
Query: 126 IEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRV 162
I L L+ +D+++NQI + + + EL++
Sbjct: 232 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 53 GISKIENLDAQTEMRSIYMHHNLVKV--MENLSHMQLLDTINLSHNFIEKIEN--LSCLP 108
GI K D + +++ HN ++ +E+L L + L HN I IEN LS LP
Sbjct: 186 GIPK----DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241
Query: 109 VLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQI 145
LR LHL +N+L + L D LL +V + N I
Sbjct: 242 TLRELHLDNNKLSRVP--AGLPDLKLLQVVYLHTNNI 276
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 30 KGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLD 89
K T I NL T L L L N I I L + T + + N + + +++ L+
Sbjct: 168 KDVTPIANL---TDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLN 224
Query: 90 TINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
++ + +N I + L+ L L L + N+ I DI +KD L ++V NQI D
Sbjct: 225 SLKIGNNKITDLSPLANLSQLTWLEIGTNQ---ISDINAVKDLTKLKXLNVGSNQISD-- 279
Query: 150 VIEVFGAMPELRVLTLSHNP-------CVGKIKNYRRMFI 182
I V + +L L L++N +G + N +F+
Sbjct: 280 -ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFL 318
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 26 YLHFKG--YTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
YL+ G T I L L L++ N I+ I L T +R +Y++ + + + L+
Sbjct: 70 YLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLA 129
Query: 84 HMQLLDTINLSHNF-IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSH 142
++ ++NL N + + LS L L ++ +++K + I +L D LS+ ++
Sbjct: 130 NLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIANLTDLYSLSL---NY 186
Query: 143 NQIED 147
NQIED
Sbjct: 187 NQIED 191
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Query: 67 RSIYMHHNLVKVMENL-SHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTI-E 124
R + + + V+ENL + + D I+ S N I K++ L L+TL +++NR+ I E
Sbjct: 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGE 81
Query: 125 DIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINL 184
++ P L+ + +++N + + ++ ++ L L + NP K K+YR I
Sbjct: 82 GLDQA--LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYK 138
Query: 185 CVNLRHLDDYPVFDKDRKCAE 205
+R LD V K+R+ AE
Sbjct: 139 VPQVRVLDFQKVKLKERQEAE 159
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 88 LDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147
L +NL + K++ LPVL TL LSHN+L+++ + + P L+++DVS N++
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG--QTLPALTVLDVSFNRLTS 114
Query: 148 EEVIEVFGAMPELRVLTLSHN 168
+ + G + EL+ L L N
Sbjct: 115 LPLGALRG-LGELQELYLKGN 134
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 88 LDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147
L +NL + K++ LPVL TL LSHN+L+++ + + P L+++DVS N++
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG--QTLPALTVLDVSFNRLTS 114
Query: 148 EEVIEVFGAMPELRVLTLSHN 168
+ + G + EL+ L L N
Sbjct: 115 LPLGALRG-LGELQELYLKGN 134
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 32/144 (22%)
Query: 70 YMHHNLVKVMENLSHMQLLDTINLSHNFIE--KIENLSCLPVLRTLHLSHNRLKTI---- 123
Y + NL V ++L ++LS N I ++ ++S L LR L LSHNR++++
Sbjct: 38 YSNRNLTHVPKDLPPRT--KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV 95
Query: 124 ----EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN-----PCVGKI 174
+D+E+L DVSHN++++ M LR L LS N P +
Sbjct: 96 FLFNQDLEYL---------DVSHNRLQNISCC----PMASLRHLDLSFNDFDVLPVCKEF 142
Query: 175 KNYRRM-FINL-CVNLRHLDDYPV 196
N ++ F+ L R LD PV
Sbjct: 143 GNLTKLTFLGLSAAKFRQLDLLPV 166
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 88 LDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147
L +NL + K++ LPVL TL LSHN+L+++ + + P L+++DVS N++
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG--QTLPALTVLDVSFNRLTS 114
Query: 148 EEVIEVFGAMPELRVLTLSHN 168
+ + G + EL+ L L N
Sbjct: 115 LPLGALRG-LGELQELYLKGN 134
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 88 LDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147
L +NL + K++ LPVL TL LSHN+L+++ + + P L+++DVS N++
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG--QTLPALTVLDVSFNRLTS 114
Query: 148 EEVIEVFGAMPELRVLTLSHN 168
+ + G + EL+ L L N
Sbjct: 115 LPLGALRG-LGELQELYLKGN 134
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 88 LDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147
L +NL + K++ LPVL TL LSHN+L+++ + + P L+++DVS N++
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG--QTLPALTVLDVSFNRLTS 114
Query: 148 EEVIEVFGAMPELRVLTLSHN 168
+ + G + EL+ L L N
Sbjct: 115 LPLGALRG-LGELQELYLKGN 134
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 8/94 (8%)
Query: 79 MENLSHMQLLDTINLSHNFIEKIE----NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPL 134
+ENL +++ LD LSH+ IE + L L L++L+LS+N +++ E K+CP
Sbjct: 346 LENLENLRELD---LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK-TEAFKECPQ 401
Query: 135 LSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
L ++D++ +++ ++ F + L+VL LSH+
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 16/125 (12%)
Query: 53 GISKIENLDAQTEMRSIYMHHNLVKV-------MENLSHMQLLDTINLSHN--FIEKIEN 103
G +ENL+ +R + + H+ ++ + NLSH+Q ++NLS+N K E
Sbjct: 342 GTGCLENLE---NLRELDLSHDDIETSDCCNLQLRNLSHLQ---SLNLSYNEPLSLKTEA 395
Query: 104 LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVL 163
P L L L+ RLK + ++ LL ++++SH+ + D ++F +P L+ L
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL-DISSEQLFDGLPALQHL 454
Query: 164 TLSHN 168
L N
Sbjct: 455 NLQGN 459
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 88 LDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147
L +NL + K++ LPVL TL LSHN+L+++ + + P L+++DVS N++
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG--QTLPALTVLDVSFNRLTS 114
Query: 148 EEVIEVFGAMPELRVLTLSHN 168
+ + G + EL+ L L N
Sbjct: 115 LPLGALRG-LGELQELYLKGN 134
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 88 LDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147
L +NL + K++ LPVL TL LSHN+L+++ + + P L+++DVS N++
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG--QTLPALTVLDVSFNRLTS 114
Query: 148 EEVIEVFGAMPELRVLTLSHN 168
+ + G + EL+ L L N
Sbjct: 115 LPLGALRG-LGELQELYLKGN 134
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 88 LDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147
L +NL + K++ LPVL TL LSHN+L+++ + + P L+++DVS N++
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG--QTLPALTVLDVSFNRLTS 114
Query: 148 EEVIEVFGAMPELRVLTLSHN 168
+ + G + EL+ L L N
Sbjct: 115 LPLGALRG-LGELQELYLKGN 134
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 88 LDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147
L +NL + K++ LPVL TL LSHN+L+++ + + P L+++DVS N++
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG--QTLPALTVLDVSFNRLTS 114
Query: 148 EEVIEVFGAMPELRVLTLSHN 168
+ + G + EL+ L L N
Sbjct: 115 LPLGALRG-LGELQELYLKGN 134
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 88 LDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147
L +NL + K++ LPVL TL LSHN+L+++ + + P L+++DVS N++
Sbjct: 58 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG--QTLPALTVLDVSFNRLTS 115
Query: 148 EEVIEVFGAMPELRVLTLSHN 168
+ + G + EL+ L L N
Sbjct: 116 LPLGALRG-LGELQELYLKGN 135
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 43 GLKCLWLENNGISKIENLDAQTEMRSIYMHHNL-----VKVMENLSHMQLLDTINLSHNF 97
G K ++L NN I+ + +LD R Y+ L V E + L+ +NL +NF
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180
Query: 98 IEKIENLSCLPVLRTLHLSHNRL 120
I ++ L+TL LS N+L
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKL 203
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 43 GLKCLWLENNGISKIENLDAQTEMRSIYMHHNL-----VKVMENLSHMQLLDTINLSHNF 97
G K ++L NN I+ + +LD R Y+ L V E + L+ +NL +NF
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180
Query: 98 IEKIENLSCLPVLRTLHLSHNRL 120
I ++ L+TL LS N+L
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKL 203
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 67 RSIYMHHNLVKVM--ENLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKT 122
R + + N ++V+ + H++ L+ + LS N + KIE + LP L TL L NRL T
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 123 I--EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
+ + E+L L + + +N IE F +P LR L L + +++
Sbjct: 98 VPTQAFEYLSK---LRELWLRNNPIESIPSY-AFNRVPSLRRLDLGE---LKRLEYISEA 150
Query: 181 FINLCVNLRHLD 192
VNLR+L+
Sbjct: 151 AFEGLVNLRYLN 162
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 12/158 (7%)
Query: 19 PSLNDVLYLHFKGYTVIENLEEY-TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNL 75
PSLN + + TV EY + L+ LWL NN I I + + +R + +
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE-- 140
Query: 76 VKVMENLSHMQL-----LDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLK 130
+K +E +S L +NL ++ I NL+ L L L LS NRL I +
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRP-GSFQ 199
Query: 131 DCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
L + + H Q+ E F + L L LSHN
Sbjct: 200 GLTSLRKLWLMHAQVATIER-NAFDDLKSLEELNLSHN 236
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 35.8 bits (81), Expect = 0.017, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 73 HNLVKVMENLSHMQLLDTINLSHNFIEKIENLSC--LPVLRTLHLSHNRLKTIEDIEHLK 130
HN V+ +E L + L +N IE+I C + L SHN+LK I +I + K
Sbjct: 582 HNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK 641
Query: 131 DCPLLSIVDVSHNQIEDE 148
+ VD S+N+I E
Sbjct: 642 SVYVXGSVDFSYNKIGSE 659
Score = 27.7 bits (60), Expect = 4.7, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 88 LDTINLSHNFIEKIENLSCLP---------VLRTLHLSHNRLKTIEDIEHLKDCPLLSIV 138
+ TI LS+N I S P +L T+ L N+L ++ D P LS
Sbjct: 699 ISTIILSNNLXTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNX 758
Query: 139 DVSHN 143
DVS+N
Sbjct: 759 DVSYN 763
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 67 RSIYMHHNLVKVM--ENLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKT 122
R + + N ++V+ + H++ L+ + LS N + KIE + LP L TL L NRL T
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 123 I--EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180
+ + E+L L + + +N IE F +P LR L L + +++
Sbjct: 98 VPTQAFEYLSK---LRELWLRNNPIESIPSY-AFNRVPSLRRLDLGE---LKRLEYISEA 150
Query: 181 FINLCVNLRHLD 192
VNLR+L+
Sbjct: 151 AFEGLVNLRYLN 162
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 12/158 (7%)
Query: 19 PSLNDVLYLHFKGYTVIENLEEY-TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNL 75
PSLN + + TV EY + L+ LWL NN I I + + +R + +
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE-- 140
Query: 76 VKVMENLSHMQL-----LDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLK 130
+K +E +S L +NL ++ I NL+ L L L LS NRL I +
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRP-GSFQ 199
Query: 131 DCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
L + + H Q+ E F + L L LSHN
Sbjct: 200 GLTSLRKLWLMHAQVATIER-NAFDDLKSLEELNLSHN 236
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 35.0 bits (79), Expect = 0.033, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 22/113 (19%)
Query: 33 TVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTIN 92
T ++ ++ L+CL+ + G K+ ++ ++ S+ NL++ Q+ +
Sbjct: 324 TSLQKXKKLGXLECLYNQLEG--KLPAFGSEIKLASL-----------NLAYNQITEIPA 370
Query: 93 LSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQI 145
F E++ENLS +HN+LK I +I K + S +D S+N+I
Sbjct: 371 NFCGFTEQVENLS---------FAHNKLKYIPNIFDAKSVSVXSAIDFSYNEI 414
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 78 VMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKD-CPLLS 136
+ + ++ L TIN+ + I NL L L+ L LS NR+ D+E L + CP L
Sbjct: 42 LTDEFEELEFLSTINVG---LTSISNLPKLNKLKKLELSENRISG--DLEVLAEKCPNLK 96
Query: 137 IVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPV 196
+++S N+I+D IE + L+ L L N V + YR L + +LD Y
Sbjct: 97 HLNLSGNKIKDLSTIEPLKKLENLKSLDL-FNCEVTNLNAYRENVFKLLPQVMYLDGY-- 153
Query: 197 FDKDRKCA 204
D+D K A
Sbjct: 154 -DRDNKEA 160
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 38/136 (27%)
Query: 73 HNLVKVMENLSHMQLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLK 130
+ L+ V ++LS Q +N+S N+I ++ ++ L LR L +SHNR++ ++
Sbjct: 10 NGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD------ 61
Query: 131 DCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRH 190
I VF EL L LSHN V ++ + VNL+H
Sbjct: 62 --------------------ISVFKFNQELEYLDLSHNKLV-------KISCHPTVNLKH 94
Query: 191 LD-DYPVFDKDRKCAE 205
LD + FD C E
Sbjct: 95 LDLSFNAFDALPICKE 110
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 43 GLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQL---LDTINLSHNFIE 99
GL +N G + +L +Q E+ + + +++L+ MQ L ++LSHN I
Sbjct: 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS 76
Query: 100 KIENLSCLPVLRTLHLSHNRLKTIEDI 126
+ L L L L ++ NRLK + I
Sbjct: 77 DLSPLKDLTKLEELSVNRNRLKNLNGI 103
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 66 MRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIED 125
++S+ + +N +K + +L LL+ + +S+N +EK+ L L+ + + +N LK + D
Sbjct: 113 LKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD 170
Query: 126 IEHLKDCPLLSIVDVSHNQIED 147
+ P L + +NQ+E+
Sbjct: 171 L-----PPSLEFIAAGNNQLEE 187
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 75 LVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPL 134
L + + ++ L TIN+ + I NL L L+ L LS NR+ ++ K CP
Sbjct: 34 LEGLTDEFEELEFLSTINVG---LTSIANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPN 89
Query: 135 LSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194
L+ +++S N+I+D IE + L+ L L N V + +YR L L +LD Y
Sbjct: 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDL-FNCEVTNLNDYRENVFKLLPQLTYLDGY 148
>pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
Length = 216
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 142 HNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNY 177
H + D+++ VF A +++ TL+ +P GK K Y
Sbjct: 134 HQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGY 169
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 61 DAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINLSHNFIEKIENLSC--LPVLRTLHLS 116
D T + + + HN ++ + N + L ++++ N I K+E C LP+L+ L+L
Sbjct: 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81
Query: 117 HNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
HN L + D + C L+ + + N I+ + F L L LSHN
Sbjct: 82 HNELSQLSD-KTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHN 131
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 27/117 (23%)
Query: 61 DAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINLSHNFIEKIENLSC--LPVLRTLHLS 116
D T + + + HN ++ + N + L ++++ N I K+E C LP+L+ L+L
Sbjct: 32 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 91
Query: 117 HNRLKTIED------------------IEHLKDCPL-----LSIVDVSHNQIEDEEV 150
HN L + D I+ +K+ P L +D+SHN + ++
Sbjct: 92 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 148
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 61 DAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINLSHNFIEKIENLSC--LPVLRTLHLS 116
D T + + + HN ++ + N + L ++++ N I K+E C LP+L+ L+L
Sbjct: 27 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 86
Query: 117 HNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
HN L + D + C L+ + + N I+ + F L L LSHN
Sbjct: 87 HNELSQLSD-KTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHN 136
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 54 ISKIENLDAQ-TEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFI----EKIENLSCL- 107
+ K++ LD + + +I+ ++ + + + + L INL+ N I ++ENL L
Sbjct: 361 LEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420
Query: 108 -----PVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQI----EDEEVIEVFGAMP 158
P L+ L L+ NR + + + P L + + N + E E +VF +
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480
Query: 159 ELRVLTLSHN 168
L+VL L+HN
Sbjct: 481 HLQVLYLNHN 490
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 12/127 (9%)
Query: 53 GISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIEN-------LS 105
G+ K+ +D Q +I + K +E L + L D + +FI I + L
Sbjct: 336 GLPKVAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV 394
Query: 106 CLP----VLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELR 161
LP +HLS NRL+ ++ + L P L I+ ++ N+ + P L
Sbjct: 395 TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE 454
Query: 162 VLTLSHN 168
L L N
Sbjct: 455 QLFLGEN 461
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 61 DAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIEKIENLSC--LPVLRTLHLS 116
D + + + + HN ++ + N + L ++ N I K+E C LP+L+ L+L
Sbjct: 22 DLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ 81
Query: 117 HNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
HN L I D + C L+ +D+ N I + F L L LSHN
Sbjct: 82 HNELSQISD-QTFVFCTNLTELDLMSNSIHKIKS-NPFKNQKNLIKLDLSHN 131
>pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 142 HNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNY 177
H + D+++ VF A +++ TL+ +P GK K Y
Sbjct: 119 HQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGY 154
>pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 142 HNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNY 177
H + D+++ VF A +++ TL+ +P GK K Y
Sbjct: 118 HQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGY 153
>pdb|2R32|A Chain A, Crystal Structure Of Human Gitrl Variant
Length = 166
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 114 HLSHNRLKTIED--------IEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTL 165
H+ +R+K IED I H+++ + + E + FG +P +
Sbjct: 3 HMGGSRMKQIEDKIEEILSKIYHIENEIARIKKLIGERETAKEPCMAKFGPLPSKWQMAS 62
Query: 166 SHNPCVGKIKNYR 178
S PCV K+ +++
Sbjct: 63 SEPPCVNKVSDWK 75
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 19/81 (23%)
Query: 64 TEMRSIYMHHNLVKVMENLSHMQLLDTI-NLSHNFIEKIENLSC---------------- 106
T R ++ NL+ M NLSH++L I + + + +ENL
Sbjct: 131 TTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIF 190
Query: 107 --LPVLRTLHLSHNRLKTIED 125
+P L+ L+L+ N+LK++ D
Sbjct: 191 GKMPKLKQLNLASNQLKSVPD 211
>pdb|2R30|A Chain A, Crystal Structure Of Human Gitrl Mutant
Length = 130
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 141 SHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYR 178
SH + E + FG +P + S PCV K+ +++
Sbjct: 2 SHMETAKEPCMAKFGPLPSKWQMASSEPPCVNKVSDWK 39
>pdb|2Q1M|A Chain A, Crystal Structure Of Human Gitrl
Length = 130
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 141 SHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYR 178
SH + E + FG +P + S PCV K+ +++
Sbjct: 2 SHMETAKEPCMAKFGPLPSKWQMASSEPPCVNKVSDWK 39
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 65 EMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLK 121
++ +Y+ N V + LS+ + L I+LS+N I + N S + L TL LS+NRL+
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 122 TI--EDIEHLKDCPLLSI 137
I + LK LLS+
Sbjct: 92 CIPPRTFDGLKSLRLLSL 109
>pdb|2H0Q|A Chain A, Crystal Structure Of The Pgm Domain Of The Suppressor Of
T-Cell Receptor (Sts-1)
pdb|2H0Q|B Chain B, Crystal Structure Of The Pgm Domain Of The Suppressor Of
T-Cell Receptor (Sts-1)
pdb|2H0Q|C Chain C, Crystal Structure Of The Pgm Domain Of The Suppressor Of
T-Cell Receptor (Sts-1)
Length = 261
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 101 IENLSCLPVLRTLHLSHNRLKTIEDIEHLK 130
I+++ C P LR + +HN LK ++ HLK
Sbjct: 80 IDHVYCSPSLRCVQTAHNILKGLQQDNHLK 109
>pdb|2IKQ|A Chain A, Crystal Structure Of Mouse Sts-1 Pgm Domain In Complex
With Phosphate
pdb|2IKQ|B Chain B, Crystal Structure Of Mouse Sts-1 Pgm Domain In Complex
With Phosphate
pdb|2IKQ|M Chain M, Crystal Structure Of Mouse Sts-1 Pgm Domain In Complex
With Phosphate
Length = 270
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 101 IENLSCLPVLRTLHLSHNRLKTIEDIEHLK 130
I+++ C P LR + +HN LK ++ HLK
Sbjct: 84 IDHVYCSPSLRCVQTAHNILKGLQQDNHLK 113
>pdb|3MBK|A Chain A, The 1.35 A Structure Of The Phosphatase Domain Of The
Suppressor Of T Cell Receptor Signalling Protein In
Complex With Sulphate
pdb|3MBK|B Chain B, The 1.35 A Structure Of The Phosphatase Domain Of The
Suppressor Of T Cell Receptor Signalling Protein In
Complex With Sulphate
Length = 264
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 101 IENLSCLPVLRTLHLSHNRLKTIEDIEHLK 130
I+++ C P LR + +HN LK ++ HLK
Sbjct: 80 IDHVYCSPSLRCVQTAHNILKGLQQDNHLK 109
>pdb|2NZ6|A Chain A, Crystal Structure Of The Ptprj Inactivating Mutant C1239s
Length = 316
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 5/43 (11%)
Query: 144 QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCV 186
QIE+E ++V+G + +LR+ H P + + ++ + +F+N CV
Sbjct: 263 QIENENTVDVYGIVYDLRM----HRPLMVQTED-QYVFLNQCV 300
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 88 LDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIED 125
L + +S N ++ + + S PVL + +S N+LK++ D
Sbjct: 453 LQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPD 490
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 36/176 (20%)
Query: 22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLV----- 76
ND++Y+ + ++ + +LE+ T KC L + + +L +R +++ N +
Sbjct: 138 NDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196
Query: 77 ------KVMENLSHMQLLDT--------INLSHNFIEKIENLSCLP--------VLRTLH 114
KV+E +SH LDT +NL+ I NL+ +P LR L+
Sbjct: 197 KRLYRLKVLE-ISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLN 254
Query: 115 LSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE--VFGAMPELRVLTLSHN 168
LS+N + TIE L + L + + Q+ V+E F + LRVL +S N
Sbjct: 255 LSYNPISTIEG-SMLHELLRLQEIQLVGGQL---AVVEPYAFRGLNYLRVLNVSGN 306
>pdb|2CFV|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Receptor Type J
Length = 316
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 5/43 (11%)
Query: 144 QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCV 186
QIE+E ++V+G + +LR+ H P + + ++ + +F+N CV
Sbjct: 263 QIENENTVDVYGIVYDLRM----HRPLMVQTED-QYVFLNQCV 300
>pdb|3I36|A Chain A, Crystal Structure Of Rat Protein Tyrosine Phosphatase Eta
Catalytic Domain
Length = 342
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 5/43 (11%)
Query: 144 QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCV 186
QIE+E ++V+G + +LR+ H P + + ++ + +F+N CV
Sbjct: 263 QIENENTVDVYGIVYDLRM----HRPLMVQTED-QYVFLNQCV 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,106,799
Number of Sequences: 62578
Number of extensions: 236817
Number of successful extensions: 712
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 175
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)