Query psy10233
Match_columns 207
No_of_seqs 126 out of 1918
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 21:18:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14580 LRR_9: Leucine-rich r 99.8 1.5E-20 3.2E-25 133.8 4.3 155 51-207 6-161 (175)
2 PLN00113 leucine-rich repeat r 99.7 9.4E-17 2E-21 143.0 11.5 181 8-194 56-268 (968)
3 KOG4194|consensus 99.6 1.1E-16 2.3E-21 129.6 4.4 171 17-193 75-252 (873)
4 PLN00113 leucine-rich repeat r 99.6 3.6E-15 7.8E-20 132.9 11.0 133 41-175 139-277 (968)
5 KOG0617|consensus 99.6 2.6E-17 5.6E-22 114.6 -4.4 149 24-177 37-191 (264)
6 PF14580 LRR_9: Leucine-rich r 99.6 1.3E-15 2.8E-20 108.6 3.5 140 27-166 4-148 (175)
7 KOG4194|consensus 99.6 7E-16 1.5E-20 124.9 1.7 53 25-77 178-234 (873)
8 KOG0617|consensus 99.5 3.5E-16 7.6E-21 109.0 -3.4 158 29-193 20-180 (264)
9 KOG0444|consensus 99.4 1.3E-14 2.7E-19 119.0 -0.3 147 23-171 106-258 (1255)
10 KOG0444|consensus 99.4 9.2E-15 2E-19 119.8 -1.4 165 26-196 84-255 (1255)
11 KOG1259|consensus 99.4 1.3E-14 2.9E-19 109.4 -0.6 144 38-185 280-425 (490)
12 PRK15387 E3 ubiquitin-protein 99.3 9.4E-12 2E-16 106.8 10.5 121 44-177 344-464 (788)
13 KOG0472|consensus 99.3 2.6E-14 5.7E-19 111.3 -5.4 154 21-179 389-547 (565)
14 cd00116 LRR_RI Leucine-rich re 99.3 9.3E-12 2E-16 97.7 6.4 132 64-195 137-287 (319)
15 PRK15387 E3 ubiquitin-protein 99.2 4.4E-11 9.5E-16 102.8 8.8 153 22-195 284-454 (788)
16 KOG0472|consensus 99.2 1E-13 2.3E-18 108.0 -6.5 134 35-171 153-288 (565)
17 cd00116 LRR_RI Leucine-rich re 99.2 1.6E-11 3.5E-16 96.4 5.4 173 22-194 110-315 (319)
18 KOG1644|consensus 99.2 1.2E-11 2.7E-16 88.2 3.6 140 66-207 21-161 (233)
19 PLN03210 Resistant to P. syrin 99.2 3.7E-10 8.1E-15 102.4 13.0 80 39-118 631-714 (1153)
20 PLN03210 Resistant to P. syrin 99.2 3.8E-10 8.2E-15 102.4 12.6 167 22-196 636-835 (1153)
21 KOG0532|consensus 99.1 4.3E-13 9.3E-18 108.6 -6.4 173 17-196 72-270 (722)
22 KOG1259|consensus 99.1 5.3E-12 1.1E-16 95.5 -0.6 125 23-147 287-413 (490)
23 KOG0618|consensus 99.1 2.2E-12 4.8E-17 109.5 -3.7 161 27-196 294-486 (1081)
24 KOG3207|consensus 99.1 1.6E-11 3.4E-16 96.8 1.0 183 24-206 150-374 (505)
25 PRK15370 E3 ubiquitin-protein 99.1 2E-10 4.4E-15 98.9 7.0 159 21-193 242-422 (754)
26 KOG4237|consensus 99.1 8.2E-12 1.8E-16 97.3 -2.3 180 10-194 53-330 (498)
27 PRK15370 E3 ubiquitin-protein 99.1 5.8E-10 1.2E-14 96.2 8.5 158 22-195 201-376 (754)
28 KOG2982|consensus 99.0 2.3E-10 5E-15 86.5 3.9 186 21-206 72-299 (418)
29 KOG0618|consensus 99.0 5.4E-11 1.2E-15 101.3 -0.5 125 41-169 358-487 (1081)
30 COG4886 Leucine-rich repeat (L 99.0 2.6E-10 5.7E-15 92.3 2.6 163 22-194 118-285 (394)
31 KOG2123|consensus 99.0 7E-11 1.5E-15 88.5 -1.0 118 84-204 17-135 (388)
32 KOG0532|consensus 98.9 8.4E-11 1.8E-15 95.6 -1.5 124 21-148 122-249 (722)
33 KOG4237|consensus 98.9 5.7E-11 1.2E-15 92.7 -4.0 84 104-193 270-353 (498)
34 PF13855 LRR_8: Leucine rich r 98.8 2.8E-09 6.1E-14 62.9 3.1 59 109-169 2-60 (61)
35 COG4886 Leucine-rich repeat (L 98.8 2.8E-09 6.2E-14 86.3 3.2 150 21-175 141-294 (394)
36 KOG3207|consensus 98.8 5.7E-10 1.2E-14 88.1 -0.9 150 22-171 123-314 (505)
37 KOG1859|consensus 98.8 3E-11 6.6E-16 100.7 -8.4 126 43-171 165-292 (1096)
38 KOG0531|consensus 98.8 3.2E-10 7E-15 92.4 -2.6 108 38-146 91-199 (414)
39 KOG1859|consensus 98.8 7.2E-11 1.6E-15 98.5 -6.4 122 25-147 169-293 (1096)
40 KOG0531|consensus 98.8 8.3E-10 1.8E-14 90.0 -0.8 143 23-171 98-245 (414)
41 PF13855 LRR_8: Leucine rich r 98.8 1.4E-08 3.1E-13 59.9 4.4 58 87-145 2-61 (61)
42 KOG1909|consensus 98.8 8.8E-09 1.9E-13 79.4 4.3 39 38-76 88-132 (382)
43 KOG1909|consensus 98.7 5.3E-09 1.1E-13 80.6 2.9 177 21-197 93-309 (382)
44 PLN03150 hypothetical protein; 98.6 8.1E-08 1.8E-12 82.1 6.8 89 88-178 420-510 (623)
45 KOG4658|consensus 98.6 1.7E-07 3.8E-12 82.4 7.3 164 3-169 484-653 (889)
46 PLN03150 hypothetical protein; 98.5 2.6E-07 5.6E-12 79.0 6.9 105 66-172 420-529 (623)
47 KOG1644|consensus 98.4 3.3E-07 7.1E-12 65.9 4.7 129 19-147 18-154 (233)
48 KOG4579|consensus 98.4 8.3E-09 1.8E-13 69.7 -3.5 122 66-194 29-156 (177)
49 KOG3665|consensus 98.4 3E-07 6.5E-12 79.0 3.8 110 62-171 146-263 (699)
50 KOG2120|consensus 98.4 2.8E-08 6E-13 75.5 -2.3 189 7-200 122-352 (419)
51 PF12799 LRR_4: Leucine Rich r 98.4 6E-07 1.3E-11 49.0 3.6 38 43-80 2-40 (44)
52 KOG2739|consensus 98.3 3.9E-07 8.6E-12 67.9 3.1 112 88-200 45-157 (260)
53 PF12799 LRR_4: Leucine Rich r 98.3 9.3E-07 2E-11 48.3 3.5 36 65-100 2-38 (44)
54 KOG2120|consensus 98.3 2.2E-08 4.8E-13 76.0 -4.7 170 22-195 187-372 (419)
55 KOG4579|consensus 98.2 1.4E-07 3E-12 63.9 -1.3 100 87-194 28-131 (177)
56 KOG3665|consensus 98.1 2E-06 4.3E-11 74.0 3.2 129 36-164 141-281 (699)
57 KOG2123|consensus 98.0 1.2E-07 2.5E-12 71.5 -5.8 79 41-119 18-99 (388)
58 KOG2739|consensus 97.9 5.5E-06 1.2E-10 61.9 2.4 105 63-167 42-152 (260)
59 COG5238 RNA1 Ran GTPase-activa 97.9 2E-05 4.4E-10 59.5 5.3 137 36-172 86-256 (388)
60 KOG4658|consensus 97.8 3.4E-05 7.3E-10 68.3 4.7 135 54-196 513-652 (889)
61 COG5238 RNA1 Ran GTPase-activa 97.7 3.8E-05 8.2E-10 58.1 3.7 159 37-195 25-223 (388)
62 KOG2982|consensus 97.3 9.4E-05 2E-09 56.7 0.8 80 64-143 71-156 (418)
63 PF13306 LRR_5: Leucine rich r 97.0 0.0065 1.4E-07 40.9 7.8 54 39-94 9-66 (129)
64 PRK15386 type III secretion pr 96.9 0.004 8.7E-08 50.5 7.1 31 134-168 157-187 (426)
65 PF13306 LRR_5: Leucine rich r 96.6 0.01 2.2E-07 39.9 6.7 118 60-189 8-129 (129)
66 PRK15386 type III secretion pr 96.4 0.009 2E-07 48.5 6.0 118 38-171 48-169 (426)
67 KOG1947|consensus 96.2 0.0049 1.1E-07 51.1 3.7 131 62-194 186-329 (482)
68 KOG1947|consensus 95.8 0.0069 1.5E-07 50.2 2.7 114 84-199 186-308 (482)
69 KOG4341|consensus 95.5 0.016 3.4E-07 46.8 3.4 119 84-205 318-445 (483)
70 KOG3763|consensus 95.2 0.025 5.4E-07 47.1 3.9 92 106-198 216-313 (585)
71 KOG3864|consensus 95.1 0.012 2.6E-07 42.8 1.5 36 133-169 151-187 (221)
72 KOG4308|consensus 94.9 0.00069 1.5E-08 56.3 -5.9 159 37-195 110-299 (478)
73 PF13504 LRR_7: Leucine rich r 94.1 0.043 9.3E-07 23.1 1.5 13 43-55 2-14 (17)
74 KOG4341|consensus 92.9 0.041 8.8E-07 44.5 0.8 68 129-199 160-229 (483)
75 PF00560 LRR_1: Leucine Rich R 92.6 0.08 1.7E-06 23.9 1.2 11 111-121 3-13 (22)
76 KOG3864|consensus 92.5 0.094 2E-06 38.3 2.1 84 108-195 101-185 (221)
77 PF13516 LRR_6: Leucine Rich r 89.7 0.32 7E-06 22.2 1.8 15 158-172 2-16 (24)
78 smart00370 LRR Leucine-rich re 89.7 0.34 7.4E-06 22.6 1.9 16 42-57 2-17 (26)
79 smart00369 LRR_TYP Leucine-ric 89.7 0.34 7.4E-06 22.6 1.9 16 42-57 2-17 (26)
80 smart00365 LRR_SD22 Leucine-ri 88.9 0.4 8.8E-06 22.7 1.8 16 42-57 2-17 (26)
81 KOG3763|consensus 86.5 0.52 1.1E-05 39.6 2.3 63 84-147 216-284 (585)
82 smart00368 LRR_RI Leucine rich 84.4 1.1 2.4E-05 21.4 2.0 12 135-146 4-15 (28)
83 smart00364 LRR_BAC Leucine-ric 78.8 1.5 3.2E-05 20.7 1.2 17 43-59 3-19 (26)
84 smart00367 LRR_CC Leucine-rich 71.8 2.6 5.6E-05 19.6 1.1 13 157-169 1-13 (26)
85 smart00446 LRRcap occurring C- 64.9 5.9 0.00013 18.7 1.5 20 176-195 3-22 (26)
86 KOG0473|consensus 64.4 0.17 3.8E-06 38.0 -5.7 83 37-119 37-122 (326)
87 KOG0473|consensus 63.9 0.12 2.7E-06 38.8 -6.5 84 84-171 40-124 (326)
88 KOG4308|consensus 61.0 0.67 1.5E-05 38.9 -3.6 154 25-178 120-310 (478)
89 TIGR00864 PCC polycystin catio 43.4 19 0.00041 36.9 2.4 33 114-147 1-33 (2740)
90 PF07723 LRR_2: Leucine Rich R 32.0 39 0.00084 15.7 1.4 6 137-142 4-9 (26)
91 TIGR00864 PCC polycystin catio 26.1 44 0.00096 34.5 1.9 34 92-125 1-36 (2740)
92 KOG3735|consensus 22.4 87 0.0019 25.2 2.6 23 130-152 252-274 (353)
No 1
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.81 E-value=1.5e-20 Score=133.83 Aligned_cols=155 Identities=35% Similarity=0.528 Sum_probs=67.3
Q ss_pred cCCccCccCCccCCCCCEEEeecCccccccCCc-cccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccC
Q psy10233 51 NNGISKIENLDAQTEMRSIYMHHNLVKVMENLS-HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHL 129 (207)
Q Consensus 51 ~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l 129 (207)
.+.|+..+.+....++++|++++|.|+.++.+. .+.+|+.|++++|.++.+..+..++.|+.|++++|.|++++. ...
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~-~l~ 84 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISE-GLD 84 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CH-HHH
T ss_pred ccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcccc-chH
Confidence 344445555555566788888888887777766 477888888888888888777788888999999998887643 122
Q ss_pred CCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcccCHHhhhhhhhC
Q psy10233 130 KDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEAW 207 (207)
Q Consensus 130 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~ 207 (207)
..+++|++|++++|.|.+......++.+++|+.|++.+|+++ ..+.++..++..+|+|+.||...++..+|..|+.|
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~~~ 161 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDVTEEERQEAEKL 161 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEETTS-B-------
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEccHHHhcccccc
Confidence 457889999999999988665677789999999999999987 56888999999999999999999999998888765
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.70 E-value=9.4e-17 Score=142.99 Aligned_cols=181 Identities=21% Similarity=0.228 Sum_probs=101.2
Q ss_pred HHhhhcCCccCC-CCCCeEEeecCCCc--CccCccCCCCCCEEEeecCCccC-ccC--CccCCCCCEEEeecCccccccC
Q psy10233 8 KICKDNKLYLTP-SLNDVLYLHFKGYT--VIENLEEYTGLKCLWLENNGISK-IEN--LDAQTEMRSIYMHHNLVKVMEN 81 (207)
Q Consensus 8 ~~c~~~~~~~~~-~~~~~l~l~~~~~~--~~~~l~~l~~L~~L~l~~~~l~~-~~~--~~~l~~L~~L~l~~n~~~~~~~ 81 (207)
..|.|.|+.|.. ..+..++++.+++. ..+.+..+++|+.|++++|.+.. +|. +..+.+|++|++++|.++....
T Consensus 56 ~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p 135 (968)
T PLN00113 56 DVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP 135 (968)
T ss_pred CCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC
Confidence 478899999863 34555778887764 23567788888888888887763 443 3356677777777666542222
Q ss_pred CccccCCcEEecCCCcccc-cc-CCC------------------------CCCCCcEEEcCCCccCCccccccCCCCCCc
Q psy10233 82 LSHMQLLDTINLSHNFIEK-IE-NLS------------------------CLPVLRTLHLSHNRLKTIEDIEHLKDCPLL 135 (207)
Q Consensus 82 ~~~~~~L~~L~l~~~~~~~-~~-~~~------------------------~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L 135 (207)
...+++|++|++++|.+.. +| .+. .+++|+.|++++|.+.+. .+..+..+++|
T Consensus 136 ~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L 214 (968)
T PLN00113 136 RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSL 214 (968)
T ss_pred ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc-CChHHcCcCCc
Confidence 2334445555555554432 12 234 444455555554444331 11344445555
Q ss_pred cEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233 136 SIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194 (207)
Q Consensus 136 ~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~ 194 (207)
+.|++++|.+.+. .+..++.+++|+.|++++|.+.+.+|.. +..+++|+.|++.
T Consensus 215 ~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L~ 268 (968)
T PLN00113 215 KWIYLGYNNLSGE-IPYEIGGLTSLNHLDLVYNNLTGPIPSS----LGNLKNLQYLFLY 268 (968)
T ss_pred cEEECcCCccCCc-CChhHhcCCCCCEEECcCceeccccChh----HhCCCCCCEEECc
Confidence 5555555555433 3444555556666666665555555543 4555666655554
No 3
>KOG4194|consensus
Probab=99.65 E-value=1.1e-16 Score=129.62 Aligned_cols=171 Identities=23% Similarity=0.334 Sum_probs=134.1
Q ss_pred cCCCCCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccCCccC-CCCCEEEeecCcccccc--CCccccCCcEE
Q psy10233 17 LTPSLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIENLDAQ-TEMRSIYMHHNLVKVME--NLSHMQLLDTI 91 (207)
Q Consensus 17 ~~~~~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~~~~l-~~L~~L~l~~n~~~~~~--~~~~~~~L~~L 91 (207)
..|.+.+.+++++|.+..+ ..+.++++|+++.+.+|.+..+|.++.. .+++.|++..|.|..+. .++.++.|+.|
T Consensus 75 ~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 75 FLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred cCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 4577888899999988654 5678999999999999999999987655 55999999999887664 47788899999
Q ss_pred ecCCCccccc--cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCc
Q psy10233 92 NLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169 (207)
Q Consensus 92 ~l~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~ 169 (207)
||+.|.++.+ +.++.-.++++|++++|.|+.+.. ..+..+.+|..|-+++|+++.. .+..|+.+++|+.|++..|.
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~-~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLET-GHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeecccccccccc-ccccccchheeeecccCccccc-CHHHhhhcchhhhhhccccc
Confidence 9999998877 456666889999999999988655 6788888899999999999886 36777889999999999888
Q ss_pred cccchhhHHHHHHHhCCcceeccC
Q psy10233 170 CVGKIKNYRRMFINLCVNLRHLDD 193 (207)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~L~~L~~ 193 (207)
+. . -.+. -+..+++|+.|.+
T Consensus 233 ir-i-ve~l--tFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 233 IR-I-VEGL--TFQGLPSLQNLKL 252 (873)
T ss_pred ee-e-ehhh--hhcCchhhhhhhh
Confidence 64 1 2121 2556666655544
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.61 E-value=3.6e-15 Score=132.95 Aligned_cols=133 Identities=20% Similarity=0.265 Sum_probs=60.8
Q ss_pred CCCCCEEEeecCCccC-cc-CCccCCCCCEEEeecCccc--cccCCccccCCcEEecCCCccccc-c-CCCCCCCCcEEE
Q psy10233 41 YTGLKCLWLENNGISK-IE-NLDAQTEMRSIYMHHNLVK--VMENLSHMQLLDTINLSHNFIEKI-E-NLSCLPVLRTLH 114 (207)
Q Consensus 41 l~~L~~L~l~~~~l~~-~~-~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~ 114 (207)
+++|++|++++|.+.. .| .++.+++|++|++++|.+. .+..+..+++|++|++++|.+... | .+..+++|+.|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 3444444444444432 12 2445555555555555542 112344555555555555544322 2 244445555555
Q ss_pred cCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh
Q psy10233 115 LSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK 175 (207)
Q Consensus 115 l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 175 (207)
+++|.+.+. .+..+..+++|++|++++|.+.+. .+..++.+++|+.|++++|.+.+.+|
T Consensus 219 L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 219 LGYNNLSGE-IPYEIGGLTSLNHLDLVYNNLTGP-IPSSLGNLKNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred CcCCccCCc-CChhHhcCCCCCEEECcCceeccc-cChhHhCCCCCCEEECcCCeeeccCc
Confidence 555554431 112344444555555555544432 33444444444444444444444333
No 5
>KOG0617|consensus
Probab=99.58 E-value=2.6e-17 Score=114.56 Aligned_cols=149 Identities=21% Similarity=0.339 Sum_probs=128.3
Q ss_pred eEEeecCCCc-CccCccCCCCCCEEEeecCCccCcc-CCccCCCCCEEEeecCcccccc-CCccccCCcEEecCCCcccc
Q psy10233 24 VLYLHFKGYT-VIENLEEYTGLKCLWLENNGISKIE-NLDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHNFIEK 100 (207)
Q Consensus 24 ~l~l~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~~~~~ 100 (207)
-+.+++|.++ +++.+..+.+|++|++++|+++++| .+.++++|+.|+++.|.+...+ +|+.++-|+.||+.+|++..
T Consensus 37 rLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e 116 (264)
T KOG0617|consen 37 RLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNE 116 (264)
T ss_pred hhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccccc
Confidence 3678888886 4578999999999999999999986 5899999999999999886664 69999999999999998854
Q ss_pred --cc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhH
Q psy10233 101 --IE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNY 177 (207)
Q Consensus 101 --~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 177 (207)
+| .+..+..|+.|.+++|.++-+++ ..+.+++|++|.+..|.+.. .|..++.++.|+.|++.+|++. .+|+.
T Consensus 117 ~~lpgnff~m~tlralyl~dndfe~lp~--dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqgnrl~-vlppe 191 (264)
T KOG0617|consen 117 NSLPGNFFYMTTLRALYLGDNDFEILPP--DVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQGNRLT-VLPPE 191 (264)
T ss_pred ccCCcchhHHHHHHHHHhcCCCcccCCh--hhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhcccceee-ecChh
Confidence 34 47778899999999999877655 78899999999999999976 6888899999999999999976 66764
No 6
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.57 E-value=1.3e-15 Score=108.57 Aligned_cols=140 Identities=29% Similarity=0.413 Sum_probs=57.5
Q ss_pred eecCCCcCccCccCCCCCCEEEeecCCccCccCCc-cCCCCCEEEeecCccccccCCccccCCcEEecCCCcccccc-CC
Q psy10233 27 LHFKGYTVIENLEEYTGLKCLWLENNGISKIENLD-AQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIE-NL 104 (207)
Q Consensus 27 l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~ 104 (207)
+..+.++..+.+.+..++++|++.+|.|..++.++ .+.+|+.|++++|.++.++++..++.|++|++++|.++.++ .+
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHH
T ss_pred ccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccch
Confidence 44445555566667777899999999999888776 57889999999999998888888999999999999998874 33
Q ss_pred -CCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhh--HHHhccCCCCcEEEcC
Q psy10233 105 -SCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEV--IEVFGAMPELRVLTLS 166 (207)
Q Consensus 105 -~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~L~~l~l~ 166 (207)
..+++|+.|.+++|.|.++.....+..+++|+.|++.+|+++.... ...+..+|+|+.||-.
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 3578999999999999887777788889999999999998886321 3466789999998854
No 7
>KOG4194|consensus
Probab=99.56 E-value=7e-16 Score=124.95 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=26.5
Q ss_pred EEeecCCCcCc--cCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCccc
Q psy10233 25 LYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVK 77 (207)
Q Consensus 25 l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~ 77 (207)
+.+.+|.++.+ ..+.++.+|..|-++.|++..+|. |..+++|+.|++.+|.++
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 55666665543 234444455555555555555432 444555555555555443
No 8
>KOG0617|consensus
Probab=99.51 E-value=3.5e-16 Score=108.96 Aligned_cols=158 Identities=18% Similarity=0.279 Sum_probs=132.3
Q ss_pred cCCCcCccCccCCCCCCEEEeecCCccCc-cCCccCCCCCEEEeecCcccccc-CCccccCCcEEecCCCcccccc-CCC
Q psy10233 29 FKGYTVIENLEEYTGLKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHNFIEKIE-NLS 105 (207)
Q Consensus 29 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~ 105 (207)
...+..++.+..+.+.+.|-+++|.+..+ |.+..+.+|+.|++.+|+++.++ +++.++.|+.|+++-|.+...| .++
T Consensus 20 iSsf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 20 ISSFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred cccHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 33445667778888999999999999988 56999999999999999998765 6899999999999999988886 699
Q ss_pred CCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhC
Q psy10233 106 CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLC 185 (207)
Q Consensus 106 ~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~ 185 (207)
.++.|+.|++..|++.+...+..+-.+..|+.|+++.|.+.- +|.-++.+++|+.|.+.+|.+. ..|.. ++.+
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~--lp~dvg~lt~lqil~lrdndll-~lpke----ig~l 172 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI--LPPDVGKLTNLQILSLRDNDLL-SLPKE----IGDL 172 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCccc--CChhhhhhcceeEEeeccCchh-hCcHH----HHHH
Confidence 999999999999998876565677788899999999999986 5777889999999999999977 67765 4445
Q ss_pred CcceeccC
Q psy10233 186 VNLRHLDD 193 (207)
Q Consensus 186 ~~L~~L~~ 193 (207)
..|+.|.+
T Consensus 173 t~lrelhi 180 (264)
T KOG0617|consen 173 TRLRELHI 180 (264)
T ss_pred HHHHHHhc
Confidence 55554443
No 9
>KOG0444|consensus
Probab=99.44 E-value=1.3e-14 Score=119.02 Aligned_cols=147 Identities=27% Similarity=0.304 Sum_probs=81.7
Q ss_pred CeEEeecCCCc-CccCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCccccc-cCCccccCCcEEecCCCcc
Q psy10233 23 DVLYLHFKGYT-VIENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVM-ENLSHMQLLDTINLSHNFI 98 (207)
Q Consensus 23 ~~l~l~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~~~~ 98 (207)
.+++++.|.++ .+..+..-+++-+|++++|.|..+|. +..+..|-+|++++|.+..+ |++..+.+|++|.+++|.+
T Consensus 106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 106 TILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred eeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChh
Confidence 34555555553 33445555555556666666665543 44555566666666666433 4456666677777777766
Q ss_pred ccc--cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc
Q psy10233 99 EKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV 171 (207)
Q Consensus 99 ~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~ 171 (207)
..+ ..++.+.+|+.|.++++.-+-.-.+..+..+.+|+.+|++.|.+.. .|+.+..+++|+.|++|+|.++
T Consensus 186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhhhhhhheeccCcCcee
Confidence 544 3444555555555555532221122345555566666666666655 4555556666666666666554
No 10
>KOG0444|consensus
Probab=99.43 E-value=9.2e-15 Score=119.80 Aligned_cols=165 Identities=21% Similarity=0.253 Sum_probs=130.0
Q ss_pred EeecCCC---cCccCccCCCCCCEEEeecCCccCccC-CccCCCCCEEEeecCccccccC--CccccCCcEEecCCCccc
Q psy10233 26 YLHFKGY---TVIENLEEYTGLKCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIE 99 (207)
Q Consensus 26 ~l~~~~~---~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~~~~~ 99 (207)
....|++ -+++++..+..|.+||+++|++.++|. +....++-.|++++|+|..+|. +-+++-|-.||+++|.+.
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 3444444 356778888899999999999988874 7777888899999999877764 567788888999999988
Q ss_pred ccc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHH
Q psy10233 100 KIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYR 178 (207)
Q Consensus 100 ~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 178 (207)
.+| ....+..|+.|++++|.+.-+.. ..+..+.+|+.|++++..-+-..+|..+..+.+|..+|+|.|.+. .+|..
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQL-rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec- 240 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLNHFQL-RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC- 240 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhhHHHH-hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH-
Confidence 874 57778889999999998755422 556677788888888887665567888888999999999999976 67775
Q ss_pred HHHHHhCCcceeccCccc
Q psy10233 179 RMFINLCVNLRHLDDYPV 196 (207)
Q Consensus 179 ~~~~~~~~~L~~L~~~~~ 196 (207)
+-++++|+.|+++.-
T Consensus 241 ---ly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 241 ---LYKLRNLRRLNLSGN 255 (1255)
T ss_pred ---HhhhhhhheeccCcC
Confidence 568899999988753
No 11
>KOG1259|consensus
Probab=99.43 E-value=1.3e-14 Score=109.38 Aligned_cols=144 Identities=26% Similarity=0.411 Sum_probs=121.2
Q ss_pred ccCCCCCCEEEeecCCccCcc-CCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc-cCCCCCCCCcEEEc
Q psy10233 38 LEEYTGLKCLWLENNGISKIE-NLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI-ENLSCLPVLRTLHL 115 (207)
Q Consensus 38 l~~l~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l 115 (207)
+...+.|+++|+++|.|..+. +..-.|+++.|+++.|++..+..+..+++|+.||+++|.+..+ .+-..+.+++.|.+
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 345567999999999999885 4666799999999999999998899999999999999998776 34445678899999
Q ss_pred CCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhC
Q psy10233 116 SHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLC 185 (207)
Q Consensus 116 ~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~ 185 (207)
++|.+.++ +.+..+-+|..||+++|+|...+-...++.+|.|+++.+.+|++. .++++++.+++..
T Consensus 360 a~N~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~vdYRTKVLa~F 425 (490)
T KOG1259|consen 360 AQNKIETL---SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSVDYRTKVLARF 425 (490)
T ss_pred hhhhHhhh---hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccchHHHHHHHHH
Confidence 99999775 356777889999999999998766778899999999999999987 5677776655443
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.33 E-value=9.4e-12 Score=106.81 Aligned_cols=121 Identities=21% Similarity=0.236 Sum_probs=79.1
Q ss_pred CCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCc
Q psy10233 44 LKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTI 123 (207)
Q Consensus 44 L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 123 (207)
|+.|++++|.+..+|.+ .++|+.|++++|.++.++.+ .++|+.|++++|.+..+|.. .++|+.|++++|.++++
T Consensus 344 Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~LssI 417 (788)
T PRK15387 344 LQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSL 417 (788)
T ss_pred cceEecCCCccCCCCCC--CcccceehhhccccccCccc--ccccceEEecCCcccCCCCc--ccCCCEEEccCCcCCCC
Confidence 44444444444444332 12344444444444433322 24577778887777766543 35788888888888765
Q ss_pred cccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhH
Q psy10233 124 EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNY 177 (207)
Q Consensus 124 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 177 (207)
+. . ..+|+.|++++|.++. +|..+..+++|+.+++++|++.+..+..
T Consensus 418 P~--l---~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 418 PM--L---PSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred Cc--c---hhhhhhhhhccCcccc--cChHHhhccCCCeEECCCCCCCchHHHH
Confidence 43 1 2467889999999986 6777888999999999999999877764
No 13
>KOG0472|consensus
Probab=99.31 E-value=2.6e-14 Score=111.33 Aligned_cols=154 Identities=24% Similarity=0.314 Sum_probs=116.8
Q ss_pred CCCeEEeecCCCcC-ccCccCCCCCCE-EEeecCCccCccC-CccCCCCCEEEeecCcccccc-CCccccCCcEEecCCC
Q psy10233 21 LNDVLYLHFKGYTV-IENLEEYTGLKC-LWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHN 96 (207)
Q Consensus 21 ~~~~l~l~~~~~~~-~~~l~~l~~L~~-L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~ 96 (207)
.++.++++.|.+.. |..+..++.+.+ ++++.|.+..++. +..+++|..|++++|.+..+| .++.+..|+.++++.|
T Consensus 389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccc
Confidence 34556777777643 344555544433 5566666666654 678899999999999887765 4677778999999999
Q ss_pred ccccccCC-CCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh
Q psy10233 97 FIEKIENL-SCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK 175 (207)
Q Consensus 97 ~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 175 (207)
+|.-+|.+ ..+..++.+-.++|.+..++. ..++.+.+|.+||+.+|.+.. +|..+++|++|++|.+++|+|. .|
T Consensus 469 rFr~lP~~~y~lq~lEtllas~nqi~~vd~-~~l~nm~nL~tLDL~nNdlq~--IPp~LgnmtnL~hLeL~gNpfr--~P 543 (565)
T KOG0472|consen 469 RFRMLPECLYELQTLETLLASNNQIGSVDP-SGLKNMRNLTTLDLQNNDLQQ--IPPILGNMTNLRHLELDGNPFR--QP 543 (565)
T ss_pred ccccchHHHhhHHHHHHHHhccccccccCh-HHhhhhhhcceeccCCCchhh--CChhhccccceeEEEecCCccC--CC
Confidence 88877753 344566777777789988755 568999999999999999987 6888999999999999999986 45
Q ss_pred hHHH
Q psy10233 176 NYRR 179 (207)
Q Consensus 176 ~~~~ 179 (207)
+...
T Consensus 544 r~~i 547 (565)
T KOG0472|consen 544 RHQI 547 (565)
T ss_pred HHHH
Confidence 5443
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.26 E-value=9.3e-12 Score=97.72 Aligned_cols=132 Identities=21% Similarity=0.181 Sum_probs=63.6
Q ss_pred CCCCEEEeecCccccc------cCCccccCCcEEecCCCccccc------cCCCCCCCCcEEEcCCCccCCccc---ccc
Q psy10233 64 TEMRSIYMHHNLVKVM------ENLSHMQLLDTINLSHNFIEKI------ENLSCLPVLRTLHLSHNRLKTIED---IEH 128 (207)
Q Consensus 64 ~~L~~L~l~~n~~~~~------~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~n~i~~~~~---~~~ 128 (207)
++|+.+++++|.++.. ..+..+++|++|++++|.++.. +.+...++|+.|++++|.+++... ...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 4555555555554311 1133444555556555555421 122333466666666665543221 122
Q ss_pred CCCCCCccEEEccCCCCCChhhHHHhcc----CCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 129 LKDCPLLSIVDVSHNQIEDEEVIEVFGA----MPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 129 l~~~~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
+..+++|+.|++++|.+++......... .+.|+.|++++|.+++.........+..+++|++++.+.
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence 4445566666666666665333332222 246666666666655322222222344556666666554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.22 E-value=4.4e-11 Score=102.78 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=87.5
Q ss_pred CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc
Q psy10233 22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101 (207)
Q Consensus 22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~ 101 (207)
...+++++|.++.++. ..++|+.|++++|.+..+|.+. .+|+.|++++|.++.++.+ ..+|+.|++++|.++.+
T Consensus 284 L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp--~~L~~L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls~L 357 (788)
T PRK15387 284 LCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPALP--SELCKLWAYNNQLTSLPTL--PSGLQELSVSDNQLASL 357 (788)
T ss_pred cCEEECcCCccccccc--cccccceeECCCCccccCCCCc--ccccccccccCcccccccc--ccccceEecCCCccCCC
Confidence 3456666776665543 2356778888888777665421 2344445555544433321 12444555555544443
Q ss_pred cCCC------------------CCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEE
Q psy10233 102 ENLS------------------CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVL 163 (207)
Q Consensus 102 ~~~~------------------~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l 163 (207)
|... ...+|+.|++++|.++.++. . .++|+.|++++|.++. +|.. ...|+.|
T Consensus 358 P~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~--l---~s~L~~LdLS~N~Lss--IP~l---~~~L~~L 427 (788)
T PRK15387 358 PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV--L---PSELKELMVSGNRLTS--LPML---PSGLLSL 427 (788)
T ss_pred CCCCcccceehhhccccccCcccccccceEEecCCcccCCCC--c---ccCCCEEEccCCcCCC--CCcc---hhhhhhh
Confidence 3211 11356667777776665433 1 2467777888887775 3432 2356778
Q ss_pred EcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 164 TLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 164 ~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
++++|.+. .+|.. +..+++|+.|++++
T Consensus 428 ~Ls~NqLt-~LP~s----l~~L~~L~~LdLs~ 454 (788)
T PRK15387 428 SVYRNQLT-RLPES----LIHLSSETTVNLEG 454 (788)
T ss_pred hhccCccc-ccChH----HhhccCCCeEECCC
Confidence 88888876 67764 56778888887754
No 16
>KOG0472|consensus
Probab=99.22 E-value=1e-13 Score=108.05 Aligned_cols=134 Identities=23% Similarity=0.361 Sum_probs=67.9
Q ss_pred ccCccCCCCCCEEEeecCCccCccC-CccCCCCCEEEeecCccccc-cCCccccCCcEEecCCCccccccCCCCCCCCcE
Q psy10233 35 IENLEEYTGLKCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVM-ENLSHMQLLDTINLSHNFIEKIENLSCLPVLRT 112 (207)
Q Consensus 35 ~~~l~~l~~L~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~ 112 (207)
++++..+.++..+++.+|++..++. .-.|..|++++...|-++.+ +.++.+.+|+-|++.+|.+..+|+++.+..|.+
T Consensus 153 p~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~E 232 (565)
T KOG0472|consen 153 PEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKE 232 (565)
T ss_pred chHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHH
Confidence 3444444455555555555554422 22244555555555544333 235555555555555555555555555555555
Q ss_pred EEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc
Q psy10233 113 LHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV 171 (207)
Q Consensus 113 L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~ 171 (207)
+.++.|.|+.++. ...++++++..||+..|.++. .|+.+.-+++|..||+++|.++
T Consensus 233 lh~g~N~i~~lpa-e~~~~L~~l~vLDLRdNklke--~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 233 LHVGENQIEMLPA-EHLKHLNSLLVLDLRDNKLKE--VPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred HHhcccHHHhhHH-HHhcccccceeeecccccccc--CchHHHHhhhhhhhcccCCccc
Confidence 5555555544433 344455555555555555554 3444444555555555555554
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.21 E-value=1.6e-11 Score=96.36 Aligned_cols=173 Identities=21% Similarity=0.185 Sum_probs=120.2
Q ss_pred CCeEEeecCCCcC------ccCccCC-CCCCEEEeecCCccCc------cCCccCCCCCEEEeecCccccc------cCC
Q psy10233 22 NDVLYLHFKGYTV------IENLEEY-TGLKCLWLENNGISKI------ENLDAQTEMRSIYMHHNLVKVM------ENL 82 (207)
Q Consensus 22 ~~~l~l~~~~~~~------~~~l~~l-~~L~~L~l~~~~l~~~------~~~~~l~~L~~L~l~~n~~~~~------~~~ 82 (207)
.+.++++.+.+.. ...+..+ ++|+.|++++|.+... ..+..+++|++|++++|.++.. ..+
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l 189 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL 189 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence 4556777776641 1344566 8899999999988732 1255667899999999988631 224
Q ss_pred ccccCCcEEecCCCccccc------cCCCCCCCCcEEEcCCCccCCccccccC----CCCCCccEEEccCCCCCChh---
Q psy10233 83 SHMQLLDTINLSHNFIEKI------ENLSCLPVLRTLHLSHNRLKTIEDIEHL----KDCPLLSIVDVSHNQIEDEE--- 149 (207)
Q Consensus 83 ~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~n~i~~~~~~~~l----~~~~~L~~L~l~~n~l~~~~--- 149 (207)
..+++|+.|++++|.++.. ..+..+++|+.|++++|.+++....... ...+.|++|++++|.+++..
T Consensus 190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 269 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKD 269 (319)
T ss_pred HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHH
Confidence 4567999999999988643 2356678999999999998763221111 23478999999999997532
Q ss_pred hHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhC-CcceeccCc
Q psy10233 150 VIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLC-VNLRHLDDY 194 (207)
Q Consensus 150 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~-~~L~~L~~~ 194 (207)
+...+..++.|+.+++++|.+.+.-.......+... +.|+.++..
T Consensus 270 l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 270 LAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred HHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 345566778999999999998855333333344444 677777653
No 18
>KOG1644|consensus
Probab=99.20 E-value=1.2e-11 Score=88.20 Aligned_cols=140 Identities=32% Similarity=0.443 Sum_probs=112.4
Q ss_pred CCEEEeecCccccccCCcc-ccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCC
Q psy10233 66 MRSIYMHHNLVKVMENLSH-MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144 (207)
Q Consensus 66 L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~ 144 (207)
-+.+++++..+.....++. ..+...+||++|.+..++.+..++.|..|.+++|.|+.+.+ ..-..+++|..|.+.+|+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcc
Confidence 4455666655544444332 34567899999999888888888999999999999988655 334446789999999999
Q ss_pred CCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcccCHHhhhhhhhC
Q psy10233 145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEAW 207 (207)
Q Consensus 145 l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~ 207 (207)
+...+..+-+..+|.|+.|.+-+|+++ .-+.++.-++-++|+|+.||.+.++..+|..|+.|
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~-~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~~ 161 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAEVF 161 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchh-cccCceeEEEEecCcceEeehhhhhHHHHHHHHHH
Confidence 988776777889999999999999976 66777777889999999999999999999999876
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.18 E-value=3.7e-10 Score=102.39 Aligned_cols=80 Identities=19% Similarity=0.257 Sum_probs=39.5
Q ss_pred cCCCCCCEEEeecCC-ccCccCCccCCCCCEEEeecCc-ccc-ccCCccccCCcEEecCCC-ccccccCCCCCCCCcEEE
Q psy10233 39 EEYTGLKCLWLENNG-ISKIENLDAQTEMRSIYMHHNL-VKV-MENLSHMQLLDTINLSHN-FIEKIENLSCLPVLRTLH 114 (207)
Q Consensus 39 ~~l~~L~~L~l~~~~-l~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~ 114 (207)
..+++|+.++++++. +..+|.+..+++|++|++++|. +.. +..+..+++|+.|++++| .++.+|....+++|+.|+
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~ 710 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLN 710 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEe
Confidence 344455555554432 3333444445555555555542 222 223445555666666554 344444433556666666
Q ss_pred cCCC
Q psy10233 115 LSHN 118 (207)
Q Consensus 115 l~~n 118 (207)
+++|
T Consensus 711 Lsgc 714 (1153)
T PLN03210 711 LSGC 714 (1153)
T ss_pred CCCC
Confidence 6665
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.17 E-value=3.8e-10 Score=102.36 Aligned_cols=167 Identities=14% Similarity=0.098 Sum_probs=111.1
Q ss_pred CCeEEeecCC-CcCccCccCCCCCCEEEeecCC-ccCcc-CCccCCCCCEEEeecC-ccccccCCccccCCcEEecCCCc
Q psy10233 22 NDVLYLHFKG-YTVIENLEEYTGLKCLWLENNG-ISKIE-NLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNF 97 (207)
Q Consensus 22 ~~~l~l~~~~-~~~~~~l~~l~~L~~L~l~~~~-l~~~~-~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~L~~L~l~~~~ 97 (207)
.+.++++.+. ++.++.++.+++|+.|++++|. +..+| .+..+++|+.|++++| .++.++....+++|+.|++++|.
T Consensus 636 Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 636 LRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred CCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence 3456666553 5667778889999999999874 45555 4788899999999986 45555543467888888888873
Q ss_pred -cccccCCCCCCCCcEEEcCCCccCCcccccc----------------------------CCCCCCccEEEccCCCCCCh
Q psy10233 98 -IEKIENLSCLPVLRTLHLSHNRLKTIEDIEH----------------------------LKDCPLLSIVDVSHNQIEDE 148 (207)
Q Consensus 98 -~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~----------------------------l~~~~~L~~L~l~~n~l~~~ 148 (207)
+..+|.. ..+|+.|++++|.++.++.... ....++|+.|++++|.....
T Consensus 716 ~L~~~p~~--~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~ 793 (1153)
T PLN03210 716 RLKSFPDI--STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE 793 (1153)
T ss_pred Cccccccc--cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc
Confidence 3333432 3567777777777655442100 01124677788877754433
Q ss_pred hhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCccc
Q psy10233 149 EVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPV 196 (207)
Q Consensus 149 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~ 196 (207)
+|..++.+++|+.|++++|...+.+|.. ..+++|+.|+++.+
T Consensus 794 -lP~si~~L~~L~~L~Ls~C~~L~~LP~~-----~~L~sL~~L~Ls~c 835 (1153)
T PLN03210 794 -LPSSIQNLHKLEHLEIENCINLETLPTG-----INLESLESLDLSGC 835 (1153)
T ss_pred -cChhhhCCCCCCEEECCCCCCcCeeCCC-----CCccccCEEECCCC
Confidence 5777788888888888887655566653 15666777766654
No 21
>KOG0532|consensus
Probab=99.15 E-value=4.3e-13 Score=108.60 Aligned_cols=173 Identities=20% Similarity=0.236 Sum_probs=98.3
Q ss_pred cCCCCCCeEEeecCCCcC-ccCccCCCCCCEEEeecCCccCcc-CCccCCC----------------------CCEEEee
Q psy10233 17 LTPSLNDVLYLHFKGYTV-IENLEEYTGLKCLWLENNGISKIE-NLDAQTE----------------------MRSIYMH 72 (207)
Q Consensus 17 ~~~~~~~~l~l~~~~~~~-~~~l~~l~~L~~L~l~~~~l~~~~-~~~~l~~----------------------L~~L~l~ 72 (207)
.+.......+++.|.+.. +.+++.+..|+.+.++.|++..++ .+..+.. |+.|.++
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~s 151 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVS 151 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEe
Confidence 444455566777776643 233444444444444444444442 2444444 4455555
Q ss_pred cCcccccc-CCccccCCcEEecCCCcccccc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhh
Q psy10233 73 HNLVKVME-NLSHMQLLDTINLSHNFIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEV 150 (207)
Q Consensus 73 ~n~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 150 (207)
+|.++.++ .++..++|..++.+.|.+..+| .+..+.+|+.+++..|.+..++. .+..+ .|..||++.|.++. +
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~--El~~L-pLi~lDfScNkis~--i 226 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPE--ELCSL-PLIRLDFSCNKISY--L 226 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCH--HHhCC-ceeeeecccCceee--c
Confidence 55444332 2444444555555555555443 34455555555555555555433 33333 36778888888876 5
Q ss_pred HHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCccc
Q psy10233 151 IEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPV 196 (207)
Q Consensus 151 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~ 196 (207)
|-.|.+|++|+.|-+.+|++.. |.......++..-.++|+.+-+
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqS--PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQS--PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred chhhhhhhhheeeeeccCCCCC--ChHHHHhccceeeeeeecchhc
Confidence 7777788888888888888743 5555556677777777777655
No 22
>KOG1259|consensus
Probab=99.14 E-value=5.3e-12 Score=95.52 Aligned_cols=125 Identities=23% Similarity=0.336 Sum_probs=110.9
Q ss_pred CeEEeecCCCcCccC-ccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCC-ccccCCcEEecCCCcccc
Q psy10233 23 DVLYLHFKGYTVIEN-LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENL-SHMQLLDTINLSHNFIEK 100 (207)
Q Consensus 23 ~~l~l~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~~~~~~ 100 (207)
..+++++|.++.+.+ +.-.++++.|++++|.+..+..+..+++|..||+++|.+..+.++ ..+.++++|.+++|.+..
T Consensus 287 telDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~ 366 (490)
T KOG1259|consen 287 TELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIET 366 (490)
T ss_pred hhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhh
Confidence 458899999987754 455699999999999999998899999999999999998777664 367788899999999999
Q ss_pred ccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCC
Q psy10233 101 IENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147 (207)
Q Consensus 101 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~ 147 (207)
++.+..+.+|..|++++|.|........++.+|.|+++.+.+|.+..
T Consensus 367 LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 367 LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 98899999999999999999988777889999999999999998876
No 23
>KOG0618|consensus
Probab=99.12 E-value=2.2e-12 Score=109.54 Aligned_cols=161 Identities=24% Similarity=0.314 Sum_probs=107.5
Q ss_pred eecCCCcCc-cCccCCCCCCEEEeecCCccCccC--C-------------------------ccCCCCCEEEeecCccc-
Q psy10233 27 LHFKGYTVI-ENLEEYTGLKCLWLENNGISKIEN--L-------------------------DAQTEMRSIYMHHNLVK- 77 (207)
Q Consensus 27 l~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~--~-------------------------~~l~~L~~L~l~~n~~~- 77 (207)
...|.++.+ +.+.+++.|++|++..|.+..+|. + ..++.|+.|++.+|.++
T Consensus 294 ~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 294 AAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred hhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence 334444433 334557777788887777765543 1 12344555566666663
Q ss_pred -cccCCccccCCcEEecCCCccccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHh
Q psy10233 78 -VMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVF 154 (207)
Q Consensus 78 -~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 154 (207)
.++.+..+++|+.|+|++|.++.+|+ +.++..|++|++++|+++.++. .+..++.|++|....|.+.. +| .+
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~--tva~~~~L~tL~ahsN~l~~--fP-e~ 448 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD--TVANLGRLHTLRAHSNQLLS--FP-EL 448 (1081)
T ss_pred cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH--HHHhhhhhHHHhhcCCceee--ch-hh
Confidence 33556777888888888888887763 6677888888888888877665 66777788888888888876 56 55
Q ss_pred ccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCccc
Q psy10233 155 GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPV 196 (207)
Q Consensus 155 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~ 196 (207)
..+++|+.+|++.|.+....-.. ..--++|++||+..-
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~----~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPE----ALPSPNLKYLDLSGN 486 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhh----hCCCcccceeeccCC
Confidence 68889999999999875322221 111178899988753
No 24
>KOG3207|consensus
Probab=99.11 E-value=1.6e-11 Score=96.77 Aligned_cols=183 Identities=20% Similarity=0.245 Sum_probs=97.2
Q ss_pred eEEeecCCCcCc----cCccCCCCCCEEEeecCCccCcc-C--CccCCCCCEEEeecCccccc--cC-Ccc---------
Q psy10233 24 VLYLHFKGYTVI----ENLEEYTGLKCLWLENNGISKIE-N--LDAQTEMRSIYMHHNLVKVM--EN-LSH--------- 84 (207)
Q Consensus 24 ~l~l~~~~~~~~----~~l~~l~~L~~L~l~~~~l~~~~-~--~~~l~~L~~L~l~~n~~~~~--~~-~~~--------- 84 (207)
.++++.|-+... .-...+++|+.|+++.|.+...- + -..+++++.|.++.|+++.- .. ...
T Consensus 150 ~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L 229 (505)
T KOG3207|consen 150 DLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYL 229 (505)
T ss_pred eecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhh
Confidence 355555544222 22245666777777776655431 1 22445566666666655311 00 122
Q ss_pred ---------------ccCCcEEecCCCccccc---cCCCCCCCCcEEEcCCCccCCcccccc-----CCCCCCccEEEcc
Q psy10233 85 ---------------MQLLDTINLSHNFIEKI---ENLSCLPVLRTLHLSHNRLKTIEDIEH-----LKDCPLLSIVDVS 141 (207)
Q Consensus 85 ---------------~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~-----l~~~~~L~~L~l~ 141 (207)
+..|++|+|++|++-.+ +..+.++.|..|+++.+.+.++..+.. ...+++|+.|++.
T Consensus 230 ~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~ 309 (505)
T KOG3207|consen 230 EANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNIS 309 (505)
T ss_pred hcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecc
Confidence 33455555555554333 334555556666666665555333222 2334566666666
Q ss_pred CCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcccCHHhhhhhhh
Q psy10233 142 HNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEA 206 (207)
Q Consensus 142 ~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~ 206 (207)
.|.+.++...+.+..+++|+.+....|++..+-......++++.+.|..|+...+.+.+|..||.
T Consensus 310 ~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~eRR~AEl 374 (505)
T KOG3207|consen 310 ENNIRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNERRDAEL 374 (505)
T ss_pred cCccccccccchhhccchhhhhhcccccccccccceeEEeeeehhhhhhhcccccChHHhhhhhh
Confidence 66665554455555555666666656655443322222345666777777777777888777764
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.09 E-value=2e-10 Score=98.93 Aligned_cols=159 Identities=21% Similarity=0.266 Sum_probs=79.2
Q ss_pred CCCeEEeecCCCcCccC-ccCCCCCCEEEeecCCccCccC-CccCCCCCEEEeecCccccccC-Cc--------------
Q psy10233 21 LNDVLYLHFKGYTVIEN-LEEYTGLKCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVMEN-LS-------------- 83 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~-------------- 83 (207)
....++++.|++..++. + ..+|+.|++++|.+..+|. +. ++|++|++++|.++.++. +.
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l--~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 242 TIQEMELSINRITELPERL--PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT 317 (754)
T ss_pred cccEEECcCCccCcCChhH--hCCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccc
Confidence 45567777777765432 2 2467778888777776654 32 467777777776654432 11
Q ss_pred -----cccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCC
Q psy10233 84 -----HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP 158 (207)
Q Consensus 84 -----~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 158 (207)
..++|+.|++++|.++.+|... .++|+.|++++|.++.++. .+ .++|+.|++++|.++. +|..+. .
T Consensus 318 ~LP~~l~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~L~~LP~--~l--p~~L~~LdLs~N~Lt~--LP~~l~--~ 388 (754)
T PRK15370 318 ALPETLPPGLKTLEAGENALTSLPASL-PPELQVLDVSKNQITVLPE--TL--PPTITTLDVSRNALTN--LPENLP--A 388 (754)
T ss_pred cCCccccccceeccccCCccccCChhh-cCcccEEECCCCCCCcCCh--hh--cCCcCEEECCCCcCCC--CCHhHH--H
Confidence 1123444444444444443210 1455555555555544322 11 1345555555555554 222221 2
Q ss_pred CCcEEEcCCCccccchhhHHHHHHHhCCcceeccC
Q psy10233 159 ELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDD 193 (207)
Q Consensus 159 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~ 193 (207)
.|+.|++++|.+. .+|.........++.+..|++
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L 422 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIV 422 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEe
Confidence 3555555555544 344433333334444444443
No 26
>KOG4237|consensus
Probab=99.07 E-value=8.2e-12 Score=97.31 Aligned_cols=180 Identities=23% Similarity=0.299 Sum_probs=106.2
Q ss_pred hhhcCCccCCC----CCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCc-c-CCccCCCCCEEEeec-Ccccccc
Q psy10233 10 CKDNKLYLTPS----LNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKI-E-NLDAQTEMRSIYMHH-NLVKVME 80 (207)
Q Consensus 10 c~~~~~~~~~~----~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~-~-~~~~l~~L~~L~l~~-n~~~~~~ 80 (207)
|+..|++..|. ....++++.|+++.++ +++.+++|+.+|+++|.|+.+ | .|..++.+..|-+.+ |.|+.++
T Consensus 53 Cr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 53 CRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred ccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 55555555443 4456888899887664 578889999999999998877 2 477887777766655 7776553
Q ss_pred C--CccccCC------------------------cEEecCCCcccccc--CCCCCCCCcEEEcCCCcc------------
Q psy10233 81 N--LSHMQLL------------------------DTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRL------------ 120 (207)
Q Consensus 81 ~--~~~~~~L------------------------~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i------------ 120 (207)
. |.++..+ ..|.+.+|.+..++ .+..+..++.+.+..|.+
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 2 4444444 44444444443331 233333333333333221
Q ss_pred -------------------------------------------------CCccccccCCCCCCccEEEccCCCCCChhhH
Q psy10233 121 -------------------------------------------------KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151 (207)
Q Consensus 121 -------------------------------------------------~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 151 (207)
....+...++.+++|+.+++++|.++... .
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~-~ 291 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE-D 291 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh-h
Confidence 00001122455677777777777777653 5
Q ss_pred HHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233 152 EVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194 (207)
Q Consensus 152 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~ 194 (207)
.+|.+..+++.|.+..|.+. .+. ..++..+..|+.|++.
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~-~v~---~~~f~~ls~L~tL~L~ 330 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLE-FVS---SGMFQGLSGLKTLSLY 330 (498)
T ss_pred hhhcchhhhhhhhcCcchHH-HHH---HHhhhccccceeeeec
Confidence 66666777777777777654 222 2357777888777665
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.06 E-value=5.8e-10 Score=96.18 Aligned_cols=158 Identities=20% Similarity=0.220 Sum_probs=85.1
Q ss_pred CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccC-CccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc
Q psy10233 22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK 100 (207)
Q Consensus 22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~ 100 (207)
...++++.|.++.++.- -..+|+.|++++|.+..+|. + ..+|+.|++++|.+..++.. ..++|+.|++++|.+..
T Consensus 201 L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~~LP~~-l~s~L~~L~Ls~N~L~~ 276 (754)
T PRK15370 201 ITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATL--PDTIQEMELSINRITELPER-LPSALQSLDLFHNKISC 276 (754)
T ss_pred CcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhh--hccccEEECcCCccCcCChh-HhCCCCEEECcCCccCc
Confidence 44555666665543321 12456666666666665543 2 13566666666665544321 12356667777666665
Q ss_pred ccCCCCCCCCcEEEcCCCccCCccccc------------cC-----CCCCCccEEEccCCCCCChhhHHHhccCCCCcEE
Q psy10233 101 IENLSCLPVLRTLHLSHNRLKTIEDIE------------HL-----KDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVL 163 (207)
Q Consensus 101 ~~~~~~~~~L~~L~l~~n~i~~~~~~~------------~l-----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l 163 (207)
+|.-. .++|+.|++++|.++.++... .+ .-.++|+.|++++|.++. ++..+ .++|+.|
T Consensus 277 LP~~l-~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~--LP~~l--~~sL~~L 351 (754)
T PRK15370 277 LPENL-PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS--LPASL--PPELQVL 351 (754)
T ss_pred ccccc-CCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc--CChhh--cCcccEE
Confidence 54311 146677777777666543200 00 012456677777776665 34333 2578888
Q ss_pred EcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 164 TLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 164 ~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
++++|.+. .+|... .+.|+.|+++.
T Consensus 352 ~Ls~N~L~-~LP~~l------p~~L~~LdLs~ 376 (754)
T PRK15370 352 DVSKNQIT-VLPETL------PPTITTLDVSR 376 (754)
T ss_pred ECCCCCCC-cCChhh------cCCcCEEECCC
Confidence 88888776 455421 24666666654
No 28
>KOG2982|consensus
Probab=99.02 E-value=2.3e-10 Score=86.50 Aligned_cols=186 Identities=18% Similarity=0.252 Sum_probs=129.6
Q ss_pred CCCeEEeecCCCcCccC----ccCCCCCCEEEeecCCccCc-cCC-ccCCCCCEEEeecCcccc--c-cCCccccCCcEE
Q psy10233 21 LNDVLYLHFKGYTVIEN----LEEYTGLKCLWLENNGISKI-ENL-DAQTEMRSIYMHHNLVKV--M-ENLSHMQLLDTI 91 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~~~----l~~l~~L~~L~l~~~~l~~~-~~~-~~l~~L~~L~l~~n~~~~--~-~~~~~~~~L~~L 91 (207)
.+..+++..|.+...++ +.+++.|+.|+++.|++... ..+ ....+|+++-+.+..+.. . ..+..+|.++++
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 34556666666643332 35778888888888877653 333 456778888887776532 2 234567777778
Q ss_pred ecCCCccccc--------c---C--------------------CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEc
Q psy10233 92 NLSHNFIEKI--------E---N--------------------LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDV 140 (207)
Q Consensus 92 ~l~~~~~~~~--------~---~--------------------~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l 140 (207)
.++.|+...+ + . ...++++..+-+..|.+.+.........+|.+.-|++
T Consensus 152 HmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL 231 (418)
T KOG2982|consen 152 HMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNL 231 (418)
T ss_pred hhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhh
Confidence 7777744211 0 0 1123566667777777766555456666777888999
Q ss_pred cCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHH--HHHHHhCCcceeccCcccCHHhhhhhhh
Q psy10233 141 SHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYR--RMFINLCVNLRHLDDYPVFDKDRKCAEA 206 (207)
Q Consensus 141 ~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~--~~~~~~~~~L~~L~~~~~~~~~~~~~~~ 206 (207)
+.|.+.++.-.+.+..+++|+.|.++.+++.+.+.... -.+++++++++.|+.+.+...+|.+.|.
T Consensus 232 ~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss~er~dSEr 299 (418)
T KOG2982|consen 232 GANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDSER 299 (418)
T ss_pred cccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccchhhhhhhHH
Confidence 99999998888999999999999999999887655322 2357999999999999888888766653
No 29
>KOG0618|consensus
Probab=98.99 E-value=5.4e-11 Score=101.30 Aligned_cols=125 Identities=26% Similarity=0.397 Sum_probs=72.8
Q ss_pred CCCCCEEEeecCCccC--ccCCccCCCCCEEEeecCccccccC--CccccCCcEEecCCCccccccC-CCCCCCCcEEEc
Q psy10233 41 YTGLKCLWLENNGISK--IENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIEN-LSCLPVLRTLHL 115 (207)
Q Consensus 41 l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l 115 (207)
++.|+.|.+.+|.+.. +|.+..+.+|+.|++++|.++.+++ +.++..|++|++++|.++.+|. +..++.|+.|..
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 3446666666666654 2556666666666666666655543 4556666666666666666542 445556666666
Q ss_pred CCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCc
Q psy10233 116 SHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169 (207)
Q Consensus 116 ~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~ 169 (207)
.+|.+..+| .+..++.|+.+|++.|+++....+... ..++|+.||+++|.
T Consensus 438 hsN~l~~fP---e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 438 HSNQLLSFP---ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred cCCceeech---hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 666655543 344556666666666666654433332 23566666666665
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=2.6e-10 Score=92.30 Aligned_cols=163 Identities=28% Similarity=0.325 Sum_probs=90.8
Q ss_pred CCeEEeecCCCcCccCccC-CC-CCCEEEeecCCccCcc-CCccCCCCCEEEeecCccccccCCc-cccCCcEEecCCCc
Q psy10233 22 NDVLYLHFKGYTVIENLEE-YT-GLKCLWLENNGISKIE-NLDAQTEMRSIYMHHNLVKVMENLS-HMQLLDTINLSHNF 97 (207)
Q Consensus 22 ~~~l~l~~~~~~~~~~l~~-l~-~L~~L~l~~~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~L~~L~l~~~~ 97 (207)
...+.+..+.++.++.... +. +|+.|++++|.+..++ .+..+++|+.|+++.|.+..++... ..+.|+.+++++|.
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~ 197 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK 197 (394)
T ss_pred eeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc
Confidence 3445566666655544333 32 6777777777777663 5666777777777777776665543 66667777777777
Q ss_pred cccccCCC-CCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhh
Q psy10233 98 IEKIENLS-CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN 176 (207)
Q Consensus 98 ~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 176 (207)
+..+|... ....|+.+.+++|.+.... ..+..+..+..+.+..|.+.. ++..++.++.++.|++++|.+. .++.
T Consensus 198 i~~l~~~~~~~~~L~~l~~~~N~~~~~~--~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~i~-~i~~ 272 (394)
T COG4886 198 ISDLPPEIELLSALEELDLSNNSIIELL--SSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQIS-SISS 272 (394)
T ss_pred cccCchhhhhhhhhhhhhhcCCcceecc--hhhhhcccccccccCCceeee--ccchhccccccceecccccccc-cccc
Confidence 76665442 3344666666666322211 133444444445555555543 2444555555666666666554 3332
Q ss_pred HHHHHHHhCCcceeccCc
Q psy10233 177 YRRMFINLCVNLRHLDDY 194 (207)
Q Consensus 177 ~~~~~~~~~~~L~~L~~~ 194 (207)
+....+++.++.+
T Consensus 273 -----~~~~~~l~~L~~s 285 (394)
T COG4886 273 -----LGSLTNLRELDLS 285 (394)
T ss_pred -----ccccCccCEEecc
Confidence 3444555555544
No 31
>KOG2123|consensus
Probab=98.96 E-value=7e-11 Score=88.48 Aligned_cols=118 Identities=30% Similarity=0.512 Sum_probs=101.7
Q ss_pred cccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEE
Q psy10233 84 HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVL 163 (207)
Q Consensus 84 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l 163 (207)
.+.+.++|+++++++..+.....++.|+.|.|+-|+|+++ ..+..|++|++|+|..|.|.+..-...+.++|+|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3556778899999999888888899999999999999875 3578899999999999999998777888999999999
Q ss_pred EcCCCccccch-hhHHHHHHHhCCcceeccCcccCHHhhhhh
Q psy10233 164 TLSHNPCVGKI-KNYRRMFINLCVNLRHLDDYPVFDKDRKCA 204 (207)
Q Consensus 164 ~l~~n~~~~~~-~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~ 204 (207)
-+..|+.++.- ++++..++..+|+|++||...++..+...|
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~A 135 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEA 135 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHH
Confidence 99999977654 467777899999999999999988774443
No 32
>KOG0532|consensus
Probab=98.93 E-value=8.4e-11 Score=95.59 Aligned_cols=124 Identities=17% Similarity=0.301 Sum_probs=101.6
Q ss_pred CCCeEEeecCCCcCc-cCccCCCCCCEEEeecCCccCcc-CCccCCCCCEEEeecCccccc-cCCccccCCcEEecCCCc
Q psy10233 21 LNDVLYLHFKGYTVI-ENLEEYTGLKCLWLENNGISKIE-NLDAQTEMRSIYMHHNLVKVM-ENLSHMQLLDTINLSHNF 97 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~~~ 97 (207)
...+++++.|.+..+ ..++.+ -|+.|.+++|++..+| .++.+++|..|+.+.|.+..+ +.++.+.+|+.+.+..|.
T Consensus 122 ~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 122 ALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH 200 (722)
T ss_pred HHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh
Confidence 345577888877654 455555 5789999999999886 488889999999999998655 568899999999999999
Q ss_pred ccccc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCCh
Q psy10233 98 IEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDE 148 (207)
Q Consensus 98 ~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 148 (207)
+..+| ++.. -.|..||++.|++..++. .+..++.|+.|-|.+|.+...
T Consensus 201 l~~lp~El~~-LpLi~lDfScNkis~iPv--~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 201 LEDLPEELCS-LPLIRLDFSCNKISYLPV--DFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhCCHHHhC-CceeeeecccCceeecch--hhhhhhhheeeeeccCCCCCC
Confidence 98886 4553 357889999999998777 899999999999999999983
No 33
>KOG4237|consensus
Probab=98.88 E-value=5.7e-11 Score=92.70 Aligned_cols=84 Identities=25% Similarity=0.337 Sum_probs=61.6
Q ss_pred CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHH
Q psy10233 104 LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFIN 183 (207)
Q Consensus 104 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 183 (207)
+..+++|+.+++++|+++.+.+ ..+.....+++|.+..|.+... -..+|.++..|+.|++.+|.++...|.. +.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~-~aFe~~a~l~eL~L~~N~l~~v-~~~~f~~ls~L~tL~L~~N~it~~~~~a----F~ 343 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIED-GAFEGAAELQELYLTRNKLEFV-SSGMFQGLSGLKTLSLYDNQITTVAPGA----FQ 343 (498)
T ss_pred HhhcccceEeccCCCccchhhh-hhhcchhhhhhhhcCcchHHHH-HHHhhhccccceeeeecCCeeEEEeccc----cc
Confidence 3445688999999999888655 6788888888888888888765 3567778888888888888887666653 44
Q ss_pred hCCcceeccC
Q psy10233 184 LCVNLRHLDD 193 (207)
Q Consensus 184 ~~~~L~~L~~ 193 (207)
.+..|..|++
T Consensus 344 ~~~~l~~l~l 353 (498)
T KOG4237|consen 344 TLFSLSTLNL 353 (498)
T ss_pred ccceeeeeeh
Confidence 5555555443
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=2.8e-09 Score=62.92 Aligned_cols=59 Identities=34% Similarity=0.553 Sum_probs=32.9
Q ss_pred CCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCc
Q psy10233 109 VLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169 (207)
Q Consensus 109 ~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~ 169 (207)
+|+.|++++|.++.++. ..+..+++|+.|++++|.++.. .++.+..+++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPP-DSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECT-TTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCH-HHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555433 4555556666666666655543 24455556666666666554
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.80 E-value=2.8e-09 Score=86.29 Aligned_cols=150 Identities=27% Similarity=0.324 Sum_probs=122.6
Q ss_pred CCCeEEeecCCCcCc-cCccCCCCCCEEEeecCCccCccCCc-cCCCCCEEEeecCccccccCC-ccccCCcEEecCCCc
Q psy10233 21 LNDVLYLHFKGYTVI-ENLEEYTGLKCLWLENNGISKIENLD-AQTEMRSIYMHHNLVKVMENL-SHMQLLDTINLSHNF 97 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~-~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~~~ 97 (207)
....++++.|.+..+ ..+..+++|+.|++++|++..++... ..+.|+.|++++|.++.++.. .....|+++.+++|.
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 355688999999877 58899999999999999999997754 889999999999999888775 355669999999995
Q ss_pred -cccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh
Q psy10233 98 -IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK 175 (207)
Q Consensus 98 -~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 175 (207)
+.....+..+..+..+.+..|.+...+ ..+..++.++.+++++|.++.. .. ++....++.+++++|.+....+
T Consensus 221 ~~~~~~~~~~~~~l~~l~l~~n~~~~~~--~~~~~l~~l~~L~~s~n~i~~i--~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 221 IIELLSSLSNLKNLSGLELSNNKLEDLP--ESIGNLSNLETLDLSNNQISSI--SS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ceecchhhhhcccccccccCCceeeecc--chhccccccceecccccccccc--cc-ccccCccCEEeccCccccccch
Confidence 444456777788888888888876642 3677788899999999999984 33 7788999999999998765433
No 36
>KOG3207|consensus
Probab=98.80 E-value=5.7e-10 Score=88.12 Aligned_cols=150 Identities=17% Similarity=0.123 Sum_probs=104.2
Q ss_pred CCeEEeecCCCcCcc---CccCCCCCCEEEeecCCccCcc---C-CccCCCCCEEEeecCccccccC---CccccCCcEE
Q psy10233 22 NDVLYLHFKGYTVIE---NLEEYTGLKCLWLENNGISKIE---N-LDAQTEMRSIYMHHNLVKVMEN---LSHMQLLDTI 91 (207)
Q Consensus 22 ~~~l~l~~~~~~~~~---~l~~l~~L~~L~l~~~~l~~~~---~-~~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L 91 (207)
.+...++...+..+. ....+++++.|+++.|-+.... . ...+|+|+.|+++.|.+..+.. -..+++|+.|
T Consensus 123 L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L 202 (505)
T KOG3207|consen 123 LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQL 202 (505)
T ss_pred hhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheE
Confidence 334455555554443 5678999999999999776542 2 5679999999999998865532 2256788899
Q ss_pred ecCCCccccc---------cCC------------------CCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCC
Q psy10233 92 NLSHNFIEKI---------ENL------------------SCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144 (207)
Q Consensus 92 ~l~~~~~~~~---------~~~------------------~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~ 144 (207)
.++.|+++.- |.+ ..++.|+.|++++|.+.+++......+++.|+.|+++.++
T Consensus 203 ~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 203 VLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred EeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC
Confidence 9999988631 210 0124677778888777665554566778888888888887
Q ss_pred CCChhhHHH-----hccCCCCcEEEcCCCccc
Q psy10233 145 IEDEEVIEV-----FGAMPELRVLTLSHNPCV 171 (207)
Q Consensus 145 l~~~~~~~~-----~~~~~~L~~l~l~~n~~~ 171 (207)
+.+..+++. ...+++|+.|++..|++.
T Consensus 283 i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 283 IASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred cchhcCCCccchhhhcccccceeeecccCccc
Confidence 776544444 446678888888888874
No 37
>KOG1859|consensus
Probab=98.80 E-value=3e-11 Score=100.71 Aligned_cols=126 Identities=25% Similarity=0.343 Sum_probs=63.6
Q ss_pred CCCEEEeecCCccCcc-CCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccCCCCC-CCCcEEEcCCCcc
Q psy10233 43 GLKCLWLENNGISKIE-NLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCL-PVLRTLHLSHNRL 120 (207)
Q Consensus 43 ~L~~L~l~~~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~n~i 120 (207)
+|...++++|.+..+. ++.-++.++.|+++.|.++.+..+..++.|+.||+++|.+..+|.++.- .+|..|++.+|.+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNAL 244 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHH
Confidence 3444455555554442 2444455555555555555555555555555555555555555433322 2355555555555
Q ss_pred CCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc
Q psy10233 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV 171 (207)
Q Consensus 121 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~ 171 (207)
+++. .+..+.+|+.||+++|-+.+..-...+..+.+|..|.+.+|++.
T Consensus 245 ~tL~---gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 245 TTLR---GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred Hhhh---hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 4432 23334455555555555554333333344455556666666654
No 38
>KOG0531|consensus
Probab=98.79 E-value=3.2e-10 Score=92.36 Aligned_cols=108 Identities=36% Similarity=0.486 Sum_probs=52.9
Q ss_pred ccCCCCCCEEEeecCCccCccC-CccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccCCCCCCCCcEEEcC
Q psy10233 38 LEEYTGLKCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLS 116 (207)
Q Consensus 38 l~~l~~L~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 116 (207)
++.+++++.+++.+|.|..+.. +..+++|++|++++|.|+.+.++..++.|+.|++.+|.+..+..+..+..|+.++++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLS 170 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCC
Confidence 4555555555555555555544 445555555555555555555555555555555555555554444445555555555
Q ss_pred CCccCCccccccCCCCCCccEEEccCCCCC
Q psy10233 117 HNRLKTIEDIEHLKDCPLLSIVDVSHNQIE 146 (207)
Q Consensus 117 ~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~ 146 (207)
+|.+..+.... ...+.+++.+++..|.+.
T Consensus 171 ~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 171 YNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 55544432200 233344444444444333
No 39
>KOG1859|consensus
Probab=98.79 E-value=7.2e-11 Score=98.52 Aligned_cols=122 Identities=22% Similarity=0.312 Sum_probs=85.7
Q ss_pred EEeecCCCcCc-cCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCc--cccCCcEEecCCCccccc
Q psy10233 25 LYLHFKGYTVI-ENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS--HMQLLDTINLSHNFIEKI 101 (207)
Q Consensus 25 l~l~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~L~~L~l~~~~~~~~ 101 (207)
.++++|.+..+ .++.-+++++.|++++|++.++..+..+++|++||+++|.++.++.++ .+. |+.|.+.+|.++.+
T Consensus 169 a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL 247 (1096)
T KOG1859|consen 169 ASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL 247 (1096)
T ss_pred hhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh
Confidence 45556665544 345556777777777777777777777777777888777777776654 333 77777777777777
Q ss_pred cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCC
Q psy10233 102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147 (207)
Q Consensus 102 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~ 147 (207)
..+.++.+|+.||+++|-+.+......+..+..|+.|+|.+|.+--
T Consensus 248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 6777777777777777777776665666666777777777776653
No 40
>KOG0531|consensus
Probab=98.77 E-value=8.3e-10 Score=89.95 Aligned_cols=143 Identities=32% Similarity=0.362 Sum_probs=90.1
Q ss_pred CeEEeecCCCcCccC-ccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc
Q psy10233 23 DVLYLHFKGYTVIEN-LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101 (207)
Q Consensus 23 ~~l~l~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~ 101 (207)
..+++..|.++.+.. +..+++|+.|++++|.|..+..+..++.|+.|++.+|.+..++++..++.|+.+++++|.+..+
T Consensus 98 ~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 98 EALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred eeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhh
Confidence 446666666666666 6677777777777777777777666777777777777777777766677777777777777666
Q ss_pred cC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCC--CCcEEEcCCCccc
Q psy10233 102 EN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP--ELRVLTLSHNPCV 171 (207)
Q Consensus 102 ~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--~L~~l~l~~n~~~ 171 (207)
.. ...+..++.+.+.+|.+..+. .+..+..+..+++..|.++.... +.... +|+.+++++|++.
T Consensus 178 e~~~~~~~~~l~~l~l~~n~i~~i~---~~~~~~~l~~~~l~~n~i~~~~~---l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 178 ENDELSELISLEELDLGGNSIREIE---GLDLLKKLVLLSLLDNKISKLEG---LNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred hhhhhhhccchHHHhccCCchhccc---chHHHHHHHHhhcccccceeccC---cccchhHHHHHHhcccCccc
Confidence 44 356667777777777665432 23333344444666666654211 11122 2667777777655
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=1.4e-08 Score=59.86 Aligned_cols=58 Identities=36% Similarity=0.580 Sum_probs=32.6
Q ss_pred CCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCC
Q psy10233 87 LLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQI 145 (207)
Q Consensus 87 ~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l 145 (207)
+|++|++++|.++.++ .+..+++|+.|++++|.++.++. ..+..+++|+.+++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 4555555555555553 24455666666666666655433 4566666666666666643
No 42
>KOG1909|consensus
Probab=98.75 E-value=8.8e-09 Score=79.39 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=20.7
Q ss_pred ccCCCCCCEEEeecCCccCc--cC----CccCCCCCEEEeecCcc
Q psy10233 38 LEEYTGLKCLWLENNGISKI--EN----LDAQTEMRSIYMHHNLV 76 (207)
Q Consensus 38 l~~l~~L~~L~l~~~~l~~~--~~----~~~l~~L~~L~l~~n~~ 76 (207)
+.++++|+++++|+|.+..- +. +.++..|++|++.+|++
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 34555666666666655531 11 34455566666666554
No 43
>KOG1909|consensus
Probab=98.75 E-value=5.3e-09 Score=80.59 Aligned_cols=177 Identities=21% Similarity=0.228 Sum_probs=117.4
Q ss_pred CCCeEEeecCCC--cCcc----CccCCCCCCEEEeecCCccCc---------------cCCccCCCCCEEEeecCccccc
Q psy10233 21 LNDVLYLHFKGY--TVIE----NLEEYTGLKCLWLENNGISKI---------------ENLDAQTEMRSIYMHHNLVKVM 79 (207)
Q Consensus 21 ~~~~l~l~~~~~--~~~~----~l~~l~~L~~L~l~~~~l~~~---------------~~~~~l~~L~~L~l~~n~~~~~ 79 (207)
..+.++++.|.+ +.++ -+..+..|++|.+.+|.+... .....-+.|+++...+|.+...
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 567889999977 2333 235678888888988877642 1134557788888888877543
Q ss_pred c------CCccccCCcEEecCCCccccc------cCCCCCCCCcEEEcCCCccCCccc---cccCCCCCCccEEEccCCC
Q psy10233 80 E------NLSHMQLLDTINLSHNFIEKI------ENLSCLPVLRTLHLSHNRLKTIED---IEHLKDCPLLSIVDVSHNQ 144 (207)
Q Consensus 80 ~------~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~~~~L~~L~l~~n~ 144 (207)
+ .++..+.|+.+.++.|.+..- ..+..+++|+.||+.+|.++.-.. ...+..+++|+.+++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 3 256677888888888877432 246677888888888887754221 2356777788888888887
Q ss_pred CCChhh---HHHh-ccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcccC
Q psy10233 145 IEDEEV---IEVF-GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVF 197 (207)
Q Consensus 145 l~~~~~---~~~~-~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~ 197 (207)
+.+.+- .+.+ ...|.|+.+.+.+|.++.+-......-.+..+.|++|+++..+
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 776432 2222 3457788888888887654443333334557778777776543
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.62 E-value=8.1e-08 Score=82.08 Aligned_cols=89 Identities=24% Similarity=0.369 Sum_probs=70.1
Q ss_pred CcEEecCCCccccc-c-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEc
Q psy10233 88 LDTINLSHNFIEKI-E-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTL 165 (207)
Q Consensus 88 L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l 165 (207)
++.|+|++|.+.+. | .+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+++. +|..++.+++|+.|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEEC
Confidence 56788888877643 3 477788889999999888753 224678888899999999988865 6788888889999999
Q ss_pred CCCccccchhhHH
Q psy10233 166 SHNPCVGKIKNYR 178 (207)
Q Consensus 166 ~~n~~~~~~~~~~ 178 (207)
++|.+.|.+|...
T Consensus 498 s~N~l~g~iP~~l 510 (623)
T PLN03150 498 NGNSLSGRVPAAL 510 (623)
T ss_pred cCCcccccCChHH
Confidence 9998888888753
No 45
>KOG4658|consensus
Probab=98.56 E-value=1.7e-07 Score=82.38 Aligned_cols=164 Identities=18% Similarity=0.260 Sum_probs=108.7
Q ss_pred hHHHHHHhhhcCCccCCCCCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCc--ccccc
Q psy10233 3 KASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNL--VKVME 80 (207)
Q Consensus 3 ~~~l~~~c~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~--~~~~~ 80 (207)
++-++.+|-|-+....-..-+...-.+.+....+...+....+.+.+-+|.+...+.-...++|++|-+..|. +...+
T Consensus 484 HDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is 563 (889)
T KOG4658|consen 484 HDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEIS 563 (889)
T ss_pred eHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcC
Confidence 3456666766655443332322233333444455555666777888888877776655556678888888885 43333
Q ss_pred C--CccccCCcEEecCCC-ccccccC-CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhcc
Q psy10233 81 N--LSHMQLLDTINLSHN-FIEKIEN-LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156 (207)
Q Consensus 81 ~--~~~~~~L~~L~l~~~-~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~ 156 (207)
. |..++.|+.||+++| ....+|. ++.+-+|++|+++++.++.+|. .++.+..|.+|++..+..... ++.....
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~--~l~~Lk~L~~Lnl~~~~~l~~-~~~i~~~ 640 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPS--GLGNLKKLIYLNLEVTGRLES-IPGILLE 640 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccch--HHHHHHhhheecccccccccc-ccchhhh
Confidence 3 677888888888877 5566663 7778888888888888876555 777778888888887765443 3556666
Q ss_pred CCCCcEEEcCCCc
Q psy10233 157 MPELRVLTLSHNP 169 (207)
Q Consensus 157 ~~~L~~l~l~~n~ 169 (207)
+.+|+.|.+..-.
T Consensus 641 L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 641 LQSLRVLRLPRSA 653 (889)
T ss_pred cccccEEEeeccc
Confidence 7888888876554
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.51 E-value=2.6e-07 Score=79.03 Aligned_cols=105 Identities=22% Similarity=0.291 Sum_probs=67.2
Q ss_pred CCEEEeecCcccc--ccCCccccCCcEEecCCCcccc-cc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEcc
Q psy10233 66 MRSIYMHHNLVKV--MENLSHMQLLDTINLSHNFIEK-IE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVS 141 (207)
Q Consensus 66 L~~L~l~~n~~~~--~~~~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~ 141 (207)
++.|++++|.+.. ++.++.+++|+.|+|++|.+.+ +| .+..+++|+.|++++|.+++. .+..+..+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECc
Confidence 5666777776642 2346667777777777777753 34 466777777777777777653 22466777777777777
Q ss_pred CCCCCChhhHHHhccC-CCCcEEEcCCCcccc
Q psy10233 142 HNQIEDEEVIEVFGAM-PELRVLTLSHNPCVG 172 (207)
Q Consensus 142 ~n~l~~~~~~~~~~~~-~~L~~l~l~~n~~~~ 172 (207)
+|.+++. +|..++.. .++..+++.+|...+
T Consensus 499 ~N~l~g~-iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGR-VPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCccccc-CChHHhhccccCceEEecCCcccc
Confidence 7777654 45554432 355667777765433
No 47
>KOG1644|consensus
Probab=98.44 E-value=3.3e-07 Score=65.91 Aligned_cols=129 Identities=22% Similarity=0.305 Sum_probs=96.3
Q ss_pred CCCCCeEEeecCCCcCccCccC-CCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccC-Cc-cccCCcEEecCC
Q psy10233 19 PSLNDVLYLHFKGYTVIENLEE-YTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMEN-LS-HMQLLDTINLSH 95 (207)
Q Consensus 19 ~~~~~~l~l~~~~~~~~~~l~~-l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~-~~~~L~~L~l~~ 95 (207)
+...+.+++.+..+..+..++- ..+...+|+++|.+...+.|..++.|++|.+.+|.|+.+.. +. .+++|+.|.+.+
T Consensus 18 ~~~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 18 SVRERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred hccccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 3444556666666665555554 35678899999999999999999999999999999987744 43 467799999999
Q ss_pred Ccccccc---CCCCCCCCcEEEcCCCccCCcccc--ccCCCCCCccEEEccCCCCCC
Q psy10233 96 NFIEKIE---NLSCLPVLRTLHLSHNRLKTIEDI--EHLKDCPLLSIVDVSHNQIED 147 (207)
Q Consensus 96 ~~~~~~~---~~~~~~~L~~L~l~~n~i~~~~~~--~~l~~~~~L~~L~l~~n~l~~ 147 (207)
|++..+. .+..+++|+.|.+-+|.++..... -.+..+|+|+.||.++-...+
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~E 154 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKE 154 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHH
Confidence 9887663 466678999999999987664332 235668899999987765444
No 48
>KOG4579|consensus
Probab=98.42 E-value=8.3e-09 Score=69.72 Aligned_cols=122 Identities=20% Similarity=0.253 Sum_probs=73.0
Q ss_pred CCEEEeecCccccc----cCCccccCCcEEecCCCccccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEE
Q psy10233 66 MRSIYMHHNLVKVM----ENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVD 139 (207)
Q Consensus 66 L~~L~l~~n~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~ 139 (207)
+..++++.|.+-.+ -.+.....|..+++++|.+..+|. ...++.+..+++++|.++++|. .+-.++.|+.++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe--E~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE--ELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH--HHhhhHHhhhcc
Confidence 44555555544211 123445566667777777776653 2234567777777777777655 367777777788
Q ss_pred ccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233 140 VSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194 (207)
Q Consensus 140 l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~ 194 (207)
++.|.+.. .+..+..+.++..|+..+|-+. ++|.. .+....+.|..+...
T Consensus 107 l~~N~l~~--~p~vi~~L~~l~~Lds~~na~~-eid~d--l~~s~~~al~~lgne 156 (177)
T KOG4579|consen 107 LRFNPLNA--EPRVIAPLIKLDMLDSPENARA-EIDVD--LFYSSLPALIKLGNE 156 (177)
T ss_pred cccCcccc--chHHHHHHHhHHHhcCCCCccc-cCcHH--HhccccHHHHHhcCC
Confidence 88777776 4666656777777777766543 44432 234444455444333
No 49
>KOG3665|consensus
Probab=98.37 E-value=3e-07 Score=78.99 Aligned_cols=110 Identities=20% Similarity=0.288 Sum_probs=56.5
Q ss_pred cCCCCCEEEeecCccccc--cC-CccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEE
Q psy10233 62 AQTEMRSIYMHHNLVKVM--EN-LSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV 138 (207)
Q Consensus 62 ~l~~L~~L~l~~n~~~~~--~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L 138 (207)
.+|+|+.|.+++-.+..- .. ..+.|+|..||+++++++.+..++.+++|+.|.+.+-.+........+-.+++|+.|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 346666666655544222 11 234556666666666665555555566666665555555443333445555666666
Q ss_pred EccCCCCCChh-----hHHHhccCCCCcEEEcCCCccc
Q psy10233 139 DVSHNQIEDEE-----VIEVFGAMPELRVLTLSHNPCV 171 (207)
Q Consensus 139 ~l~~n~l~~~~-----~~~~~~~~~~L~~l~l~~n~~~ 171 (207)
|+|........ ..+....+|.|+.||.|++.+.
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 66655333311 1222334566666666655444
No 50
>KOG2120|consensus
Probab=98.36 E-value=2.8e-08 Score=75.51 Aligned_cols=189 Identities=20% Similarity=0.149 Sum_probs=102.1
Q ss_pred HHHhh-hcCCccCCCCCCeEEeecCCCcCccCccCC----------------------------CCCCEEEeecCCccCc
Q psy10233 7 RKICK-DNKLYLTPSLNDVLYLHFKGYTVIENLEEY----------------------------TGLKCLWLENNGISKI 57 (207)
Q Consensus 7 ~~~c~-~~~~~~~~~~~~~l~l~~~~~~~~~~l~~l----------------------------~~L~~L~l~~~~l~~~ 57 (207)
...|. |.++..+-.....+++.+-++.. ..++.+ .-|+.||++...|+..
T Consensus 122 ~~VC~Rfyr~~~de~lW~~lDl~~r~i~p-~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~s 200 (419)
T KOG2120|consen 122 SGVCKRFYRLASDESLWQTLDLTGRNIHP-DVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVS 200 (419)
T ss_pred HHHHHHHhhccccccceeeeccCCCccCh-hHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHH
Confidence 34554 67777777888888888777621 111111 1244555555444432
Q ss_pred --c-CCccCCCCCEEEeecCccccc--cCCccccCCcEEecCCC-cccccc---CCCCCCCCcEEEcCCCccCCcccccc
Q psy10233 58 --E-NLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINLSHN-FIEKIE---NLSCLPVLRTLHLSHNRLKTIEDIEH 128 (207)
Q Consensus 58 --~-~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~~-~~~~~~---~~~~~~~L~~L~l~~n~i~~~~~~~~ 128 (207)
. -+..+.+|+.+.+.++++.+. ..+..-..|+.++++.+ +++... -+.+++.|..|++++|.... +....
T Consensus 201 tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~-~~Vtv 279 (419)
T KOG2120|consen 201 TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFT-EKVTV 279 (419)
T ss_pred HHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccc-hhhhH
Confidence 1 134455566666666655433 12444555666666665 444321 24455667777777775433 11111
Q ss_pred -CCC-CCCccEEEccCCC--CCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcccCHHh
Q psy10233 129 -LKD-CPLLSIVDVSHNQ--IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKD 200 (207)
Q Consensus 129 -l~~-~~~L~~L~l~~n~--l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~ 200 (207)
..+ .++|..|++++.. +....+......+|++.+||+++|..... .-...+.+++.|++|+++-|....
T Consensus 280 ~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~---~~~~~~~kf~~L~~lSlsRCY~i~ 352 (419)
T KOG2120|consen 280 AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN---DCFQEFFKFNYLQHLSLSRCYDII 352 (419)
T ss_pred HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc---hHHHHHHhcchheeeehhhhcCCC
Confidence 111 2356666666541 22222345567788888888888864432 222246778888888877665443
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.36 E-value=6e-07 Score=49.02 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=19.6
Q ss_pred CCCEEEeecCCccCccC-CccCCCCCEEEeecCcccccc
Q psy10233 43 GLKCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVME 80 (207)
Q Consensus 43 ~L~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~ 80 (207)
+|++|++++|.+..++. +..+++|++|++++|.++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 45555555555555544 555555555555555554443
No 52
>KOG2739|consensus
Probab=98.33 E-value=3.9e-07 Score=67.86 Aligned_cols=112 Identities=23% Similarity=0.371 Sum_probs=67.3
Q ss_pred CcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccc-cCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcC
Q psy10233 88 LDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIE-HLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLS 166 (207)
Q Consensus 88 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~ 166 (207)
|+.+.+.+..++.+..+..+++|++|.++.|.......+. ....+|+|++++++.|.+....-...+..+.+|..|+++
T Consensus 45 le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~ 124 (260)
T KOG2739|consen 45 LELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLF 124 (260)
T ss_pred hhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcc
Confidence 3333344444444444555556666666666322211211 233347777777777776653333344566678888888
Q ss_pred CCccccchhhHHHHHHHhCCcceeccCcccCHHh
Q psy10233 167 HNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKD 200 (207)
Q Consensus 167 ~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~ 200 (207)
+|..+. +.+++..++.-+++|++||...+...+
T Consensus 125 n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 125 NCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGEE 157 (260)
T ss_pred cCCccc-cccHHHHHHHHhhhhccccccccCCcc
Confidence 888663 777777788888999888887665544
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.30 E-value=9.3e-07 Score=48.25 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=16.3
Q ss_pred CCCEEEeecCccccccC-CccccCCcEEecCCCcccc
Q psy10233 65 EMRSIYMHHNLVKVMEN-LSHMQLLDTINLSHNFIEK 100 (207)
Q Consensus 65 ~L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~~~~~~ 100 (207)
+|++|++++|.++.++. ++.+++|+.|++++|.++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 34455555555444444 4444444444444444443
No 54
>KOG2120|consensus
Probab=98.27 E-value=2.2e-08 Score=76.00 Aligned_cols=170 Identities=23% Similarity=0.216 Sum_probs=105.3
Q ss_pred CCeEEeecCCCcCc---cCccCCCCCCEEEeecCCccCc--cCCccCCCCCEEEeecC-ccccccC---CccccCCcEEe
Q psy10233 22 NDVLYLHFKGYTVI---ENLEEYTGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHN-LVKVMEN---LSHMQLLDTIN 92 (207)
Q Consensus 22 ~~~l~l~~~~~~~~---~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~n-~~~~~~~---~~~~~~L~~L~ 92 (207)
++.++++...++.- .-++.+.+|+.+.+.++.+..- ..+..-.+|+.++++.+ +++.... +++|+.|+.|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 44566666666421 2346678888888888887763 34677788999999886 4443321 56788888888
Q ss_pred cCCCccccc--c-CCCCC-CCCcEEEcCCCc--cCCccccc-cCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEc
Q psy10233 93 LSHNFIEKI--E-NLSCL-PVLRTLHLSHNR--LKTIEDIE-HLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTL 165 (207)
Q Consensus 93 l~~~~~~~~--~-~~~~~-~~L~~L~l~~n~--i~~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l 165 (207)
++.|....- . .+... ++|..|+++++. +.. .... ..+.++.|.+||++.+.....+....+.+++-|+++.+
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~-sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK-SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh-hHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 888865321 1 11122 567778888763 111 1111 24567888888888874433345555667788888888
Q ss_pred CCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 166 SHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 166 ~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
+.|.. +++....-+.+.|.|.+||.-.
T Consensus 346 sRCY~---i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 346 SRCYD---IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hhhcC---CChHHeeeeccCcceEEEEecc
Confidence 88872 2222222356667777776544
No 55
>KOG4579|consensus
Probab=98.21 E-value=1.4e-07 Score=63.91 Aligned_cols=100 Identities=30% Similarity=0.332 Sum_probs=77.6
Q ss_pred CCcEEecCCCcccccc----CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcE
Q psy10233 87 LLDTINLSHNFIEKIE----NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRV 162 (207)
Q Consensus 87 ~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 162 (207)
.+..++|+.+.+-.++ .+.....|...++++|.+..++. .+-..++.+++++++.|.+.+ .|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~-kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPK-KFTIKFPTATTLNLANNEISD--VPEELAAMPALRS 104 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCH-HHhhccchhhhhhcchhhhhh--chHHHhhhHHhhh
Confidence 4567888888776442 35566788899999999999876 566667899999999999998 5666899999999
Q ss_pred EEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233 163 LTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194 (207)
Q Consensus 163 l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~ 194 (207)
++++.|++. ..|+- +..+.+|-.||..
T Consensus 105 lNl~~N~l~-~~p~v----i~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRV----IAPLIKLDMLDSP 131 (177)
T ss_pred cccccCccc-cchHH----HHHHHhHHHhcCC
Confidence 999999987 45543 4446666666654
No 56
>KOG3665|consensus
Probab=98.10 E-value=2e-06 Score=74.03 Aligned_cols=129 Identities=18% Similarity=0.256 Sum_probs=97.1
Q ss_pred cCcc-CCCCCCEEEeecCCccCc--c-CCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc---cCCCCCC
Q psy10233 36 ENLE-EYTGLKCLWLENNGISKI--E-NLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI---ENLSCLP 108 (207)
Q Consensus 36 ~~l~-~l~~L~~L~l~~~~l~~~--~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~ 108 (207)
..++ .+|.|++|.+.+-.+..- . -..++|+|..||+++++++.+.+++.+++|+.|.+.+-.+... -.+..++
T Consensus 141 ~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~ 220 (699)
T KOG3665|consen 141 KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLK 220 (699)
T ss_pred HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhccc
Confidence 3444 479999999988765442 1 2568899999999999999998999999999998877666543 4688999
Q ss_pred CCcEEEcCCCccCCccc-----cccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEE
Q psy10233 109 VLRTLHLSHNRLKTIED-----IEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLT 164 (207)
Q Consensus 109 ~L~~L~l~~n~i~~~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~ 164 (207)
+|+.||+|.......+. .+.-..+|.|+.||.+++.+...-....+..-|+|+.+.
T Consensus 221 ~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 221 KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred CCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 99999999986544331 123455899999999999888765555555556666544
No 57
>KOG2123|consensus
Probab=97.98 E-value=1.2e-07 Score=71.55 Aligned_cols=79 Identities=25% Similarity=0.322 Sum_probs=45.7
Q ss_pred CCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccccc---CCCCCCCCcEEEcCC
Q psy10233 41 YTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIE---NLSCLPVLRTLHLSH 117 (207)
Q Consensus 41 l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~ 117 (207)
+.+.+.|+++++.+..+.-...|+.|+.|.++-|.|+.+..+..|+.|++|.|..|.+..+. -+.++++|+.|.+..
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 34455566666665555444556666666666666666666666666666666666655542 244455555555555
Q ss_pred Cc
Q psy10233 118 NR 119 (207)
Q Consensus 118 n~ 119 (207)
|.
T Consensus 98 NP 99 (388)
T KOG2123|consen 98 NP 99 (388)
T ss_pred CC
Confidence 54
No 58
>KOG2739|consensus
Probab=97.93 E-value=5.5e-06 Score=61.88 Aligned_cols=105 Identities=22% Similarity=0.311 Sum_probs=65.1
Q ss_pred CCCCCEEEeecCccccccCCccccCCcEEecCCCccccc---c-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEE
Q psy10233 63 QTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI---E-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV 138 (207)
Q Consensus 63 l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~---~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L 138 (207)
+..|+.+.+.+.+++...++..+++|++|.++.|.+... . -.-..++|+++++++|+|..+.....+..+.+|.+|
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 344555566666666666666777777777777744332 1 122337788888888877765555566667777777
Q ss_pred EccCCCCCChh--hHHHhccCCCCcEEEcCC
Q psy10233 139 DVSHNQIEDEE--VIEVFGAMPELRVLTLSH 167 (207)
Q Consensus 139 ~l~~n~l~~~~--~~~~~~~~~~L~~l~l~~ 167 (207)
++..|..+... -...+.-+++|+.++-..
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhccccccc
Confidence 77777555422 134556667777666443
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.93 E-value=2e-05 Score=59.54 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=93.6
Q ss_pred cCccCCCCCCEEEeecCCccCc-cC-----CccCCCCCEEEeecCcccccc---------------CCccccCCcEEecC
Q psy10233 36 ENLEEYTGLKCLWLENNGISKI-EN-----LDAQTEMRSIYMHHNLVKVME---------------NLSHMQLLDTINLS 94 (207)
Q Consensus 36 ~~l~~l~~L~~L~l~~~~l~~~-~~-----~~~l~~L~~L~l~~n~~~~~~---------------~~~~~~~L~~L~l~ 94 (207)
+.+.+|+.|+.+++++|.+..- +. +.....|.+|.+++|++--+. ...+-|.|+.++..
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 4567889999999999988753 22 566788999999999773221 12345678888888
Q ss_pred CCcccccc------CCCCCCCCcEEEcCCCccCCccc--c--ccCCCCCCccEEEccCCCCCChh---hHHHhccCCCCc
Q psy10233 95 HNFIEKIE------NLSCLPVLRTLHLSHNRLKTIED--I--EHLKDCPLLSIVDVSHNQIEDEE---VIEVFGAMPELR 161 (207)
Q Consensus 95 ~~~~~~~~------~~~~~~~L~~L~l~~n~i~~~~~--~--~~l~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~~L~ 161 (207)
.|++...+ .+.....|+.+.+..|.|..-+. . -.+.++.+|+.||++.|-++-.. +.+.+..++.|+
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 88876543 24444678888888888754221 1 12455678888888888776422 345566777788
Q ss_pred EEEcCCCcccc
Q psy10233 162 VLTLSHNPCVG 172 (207)
Q Consensus 162 ~l~l~~n~~~~ 172 (207)
.|.+.+|-+..
T Consensus 246 EL~lnDClls~ 256 (388)
T COG5238 246 ELRLNDCLLSN 256 (388)
T ss_pred hccccchhhcc
Confidence 88888887654
No 60
>KOG4658|consensus
Probab=97.76 E-value=3.4e-05 Score=68.35 Aligned_cols=135 Identities=23% Similarity=0.288 Sum_probs=100.6
Q ss_pred ccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCc--cccccC--CCCCCCCcEEEcCCCc-cCCcccccc
Q psy10233 54 ISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF--IEKIEN--LSCLPVLRTLHLSHNR-LKTIEDIEH 128 (207)
Q Consensus 54 l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~--~~~~~~L~~L~l~~n~-i~~~~~~~~ 128 (207)
....|........+...+-+|.+.....-..++.|++|-+.+|. +..++. +..++.|+.||+++|. +..+| ..
T Consensus 513 ~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP--~~ 590 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP--SS 590 (889)
T ss_pred ccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC--hH
Confidence 33345555666778888888877666555566678888888885 444443 7778999999999874 44433 47
Q ss_pred CCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCccc
Q psy10233 129 LKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPV 196 (207)
Q Consensus 129 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~ 196 (207)
++.+-+|+.|++++..+.. +|..++.++.|.+|++..+.....++. ....+.+|++|.+...
T Consensus 591 I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L~~Lnl~~~~~l~~~~~----i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTGISH--LPSGLGNLKKLIYLNLEVTGRLESIPG----ILLELQSLRVLRLPRS 652 (889)
T ss_pred HhhhhhhhcccccCCCccc--cchHHHHHHhhheeccccccccccccc----hhhhcccccEEEeecc
Confidence 8888899999999999986 788889999999999998886655544 3556888888877654
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.72 E-value=3.8e-05 Score=58.14 Aligned_cols=159 Identities=19% Similarity=0.177 Sum_probs=74.4
Q ss_pred CccCCCCCCEEEeecCCccCc------cCCccCCCCCEEEeecCccc------------cccCCccccCCcEEecCCCcc
Q psy10233 37 NLEEYTGLKCLWLENNGISKI------ENLDAQTEMRSIYMHHNLVK------------VMENLSHMQLLDTINLSHNFI 98 (207)
Q Consensus 37 ~l~~l~~L~~L~l~~~~l~~~------~~~~~l~~L~~L~l~~n~~~------------~~~~~~~~~~L~~L~l~~~~~ 98 (207)
.+..+..+..+++++|.|..- ..+..-.+|+..+++.-... ..+.+-.||.|+.+++|+|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 344566677777777766542 11344455555555432110 112344666666677766666
Q ss_pred ccc-c-----CCCCCCCCcEEEcCCCccCCccccc------------cCCCCCCccEEEccCCCCCChhhH---HHhccC
Q psy10233 99 EKI-E-----NLSCLPVLRTLHLSHNRLKTIEDIE------------HLKDCPLLSIVDVSHNQIEDEEVI---EVFGAM 157 (207)
Q Consensus 99 ~~~-~-----~~~~~~~L~~L~l~~n~i~~~~~~~------------~l~~~~~L~~L~l~~n~l~~~~~~---~~~~~~ 157 (207)
+.- | -++....|.+|.+++|.+..+.... ....-|.|+.+.+.+|++...+.. ..+..-
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 432 1 1344456666666666554322100 011234566666666665543211 111222
Q ss_pred CCCcEEEcCCCccccch-hhHHHHHHHhCCcceeccCcc
Q psy10233 158 PELRVLTLSHNPCVGKI-KNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 158 ~~L~~l~l~~n~~~~~~-~~~~~~~~~~~~~L~~L~~~~ 195 (207)
..|+.+.+.+|.+...- ....-.-+..|.+|+.||++.
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD 223 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD 223 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc
Confidence 34555555555544210 111111234555555555554
No 62
>KOG2982|consensus
Probab=97.26 E-value=9.4e-05 Score=56.74 Aligned_cols=80 Identities=28% Similarity=0.358 Sum_probs=36.7
Q ss_pred CCCCEEEeecCccccccC----CccccCCcEEecCCCccccc-cCC-CCCCCCcEEEcCCCccCCccccccCCCCCCccE
Q psy10233 64 TEMRSIYMHHNLVKVMEN----LSHMQLLDTINLSHNFIEKI-ENL-SCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSI 137 (207)
Q Consensus 64 ~~L~~L~l~~n~~~~~~~----~~~~~~L~~L~l~~~~~~~~-~~~-~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~ 137 (207)
..++.+++.+|.+...+. +..+|.|+.|+++.|.+... ..+ ....+|+.+-+.+..+........+..+|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 445555555555543322 23455555555555554321 122 133455555555554433222234444555555
Q ss_pred EEccCC
Q psy10233 138 VDVSHN 143 (207)
Q Consensus 138 L~l~~n 143 (207)
|+++.|
T Consensus 151 lHmS~N 156 (418)
T KOG2982|consen 151 LHMSDN 156 (418)
T ss_pred hhhccc
Confidence 555544
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.99 E-value=0.0065 Score=40.91 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=18.1
Q ss_pred cCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc--CCccccCCcEEecC
Q psy10233 39 EEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLS 94 (207)
Q Consensus 39 ~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~ 94 (207)
.++.+|+.+.+.. .+..++ .|..+++|+.+.+..+ +..++ .+..+++++.+.+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 3444555555442 233332 2444444555555443 32221 23444444555443
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.91 E-value=0.004 Score=50.49 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=16.5
Q ss_pred CccEEEccCCCCCChhhHHHhccCCCCcEEEcCCC
Q psy10233 134 LLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168 (207)
Q Consensus 134 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n 168 (207)
+|+.|++++|.... .|..+ ..+|+.|+++.+
T Consensus 157 SLk~L~Is~c~~i~--LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNII--LPEKL--PESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCccc--Ccccc--cccCcEEEeccc
Confidence 66777776665443 22221 146666666554
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.64 E-value=0.01 Score=39.93 Aligned_cols=118 Identities=23% Similarity=0.397 Sum_probs=59.9
Q ss_pred CccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCc
Q psy10233 60 LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLL 135 (207)
Q Consensus 60 ~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L 135 (207)
|..+.+|+.+.+.. .++.++ .|..+++++.+.+..+ +..++ .+...+.++.+.+.+ .+..++. ..+..++++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~-~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD-NAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T-TTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc-ccccccccc
Confidence 56677888888875 454443 3778888999998875 55553 466666889998866 4444444 567788899
Q ss_pred cEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcce
Q psy10233 136 SIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLR 189 (207)
Q Consensus 136 ~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~ 189 (207)
+.+.+..+ +... ....+..+ .++.+.+..+- . .++.. .+.+|++|+
T Consensus 84 ~~i~~~~~-~~~i-~~~~f~~~-~l~~i~~~~~~-~-~i~~~---~F~~~~~l~ 129 (129)
T PF13306_consen 84 KNIDIPSN-ITEI-GSSSFSNC-NLKEINIPSNI-T-KIEEN---AFKNCTKLK 129 (129)
T ss_dssp CEEEETTT--BEE-HTTTTTT--T--EEE-TTB--S-S-------GGG------
T ss_pred cccccCcc-ccEE-chhhhcCC-CceEEEECCCc-c-EECCc---cccccccCC
Confidence 99998775 5443 24556666 88888877532 2 33332 356666653
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.43 E-value=0.009 Score=48.51 Aligned_cols=118 Identities=16% Similarity=0.272 Sum_probs=74.8
Q ss_pred ccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecC-ccccccCCccccCCcEEecCCC-ccccccCCCCCCCCcEEEc
Q psy10233 38 LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHN-FIEKIENLSCLPVLRTLHL 115 (207)
Q Consensus 38 l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l 115 (207)
+..+.+++.|++++|.+..+|.+. ++|+.|.++++ .++.++.. -.++|+.|.+++| .+..+| .+|+.|++
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L 119 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISGLP-----ESVRSLEI 119 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-hhhhhhheEccCcccccccc-----cccceEEe
Confidence 345688999999999888887432 36999999875 44444431 1357999999987 554433 46788888
Q ss_pred CCCccCCccccccCCCC-CCccEEEccCCCCC-ChhhHHHhccCCCCcEEEcCCCccc
Q psy10233 116 SHNRLKTIEDIEHLKDC-PLLSIVDVSHNQIE-DEEVIEVFGAMPELRVLTLSHNPCV 171 (207)
Q Consensus 116 ~~n~i~~~~~~~~l~~~-~~L~~L~l~~n~l~-~~~~~~~~~~~~~L~~l~l~~n~~~ 171 (207)
..+.... +..+ ++|+.|.+..+... ....+.. -.++|+.|++++|...
T Consensus 120 ~~n~~~~------L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 120 KGSATDS------IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI 169 (426)
T ss_pred CCCCCcc------cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc
Confidence 7665433 2223 26778877543211 1111211 2368999999988754
No 67
>KOG1947|consensus
Probab=96.22 E-value=0.0049 Score=51.05 Aligned_cols=131 Identities=21% Similarity=0.242 Sum_probs=82.2
Q ss_pred cCCCCCEEEeecC-cccc--c-cCCccccCCcEEecCCC--ccccc-----cCCCCCCCCcEEEcCCCc-cCCccccccC
Q psy10233 62 AQTEMRSIYMHHN-LVKV--M-ENLSHMQLLDTINLSHN--FIEKI-----ENLSCLPVLRTLHLSHNR-LKTIEDIEHL 129 (207)
Q Consensus 62 ~l~~L~~L~l~~n-~~~~--~-~~~~~~~~L~~L~l~~~--~~~~~-----~~~~~~~~L~~L~l~~n~-i~~~~~~~~l 129 (207)
..+.|+.+.+..+ .+.. . +....++.|+.|+++++ ..... ......++|+.++++.+. +++.......
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3566777777665 2222 2 22456778888888763 11111 123334788888888887 6554432233
Q ss_pred CCCCCccEEEccCCC-CCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233 130 KDCPLLSIVDVSHNQ-IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194 (207)
Q Consensus 130 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~ 194 (207)
..+++|+.|.+..+. +++.++......+++|+.|+++.+.... ..........|++++.+...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~--d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT--DSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch--HHHHHHHHHhCcchhhhhhh
Confidence 447888888888777 7877777788888889999999887542 22233345668777665543
No 68
>KOG1947|consensus
Probab=95.80 E-value=0.0069 Score=50.17 Aligned_cols=114 Identities=23% Similarity=0.191 Sum_probs=80.7
Q ss_pred cccCCcEEecCCC-cccc--c-cCCCCCCCCcEEEcCCC--ccCCcc--ccccCCCCCCccEEEccCCC-CCChhhHHHh
Q psy10233 84 HMQLLDTINLSHN-FIEK--I-ENLSCLPVLRTLHLSHN--RLKTIE--DIEHLKDCPLLSIVDVSHNQ-IEDEEVIEVF 154 (207)
Q Consensus 84 ~~~~L~~L~l~~~-~~~~--~-~~~~~~~~L~~L~l~~n--~i~~~~--~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~ 154 (207)
.++.|+.+.+.++ .+.. + +.....++|+.++++++ .+...+ .......+++|+.++++++. +++..+....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4677888888776 4433 2 44556789999999873 222211 12345556889999999998 8877666666
Q ss_pred ccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcccCHH
Q psy10233 155 GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDK 199 (207)
Q Consensus 155 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~ 199 (207)
..+++|+.|.+..+.- ..+.....+..+|+.|++|+++.+...
T Consensus 266 ~~c~~L~~L~l~~c~~--lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSN--LTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCc--cchhHHHHHHHhcCcccEEeeecCccc
Confidence 6699999999877762 124555667899999999999977654
No 69
>KOG4341|consensus
Probab=95.47 E-value=0.016 Score=46.78 Aligned_cols=119 Identities=22% Similarity=0.293 Sum_probs=67.4
Q ss_pred cccCCcEEecCCC-ccccc--cC-CCCCCCCcEEEcCCCccCCcc-ccccCCCCCCccEEEccCCCCCChh-hH---HHh
Q psy10233 84 HMQLLDTINLSHN-FIEKI--EN-LSCLPVLRTLHLSHNRLKTIE-DIEHLKDCPLLSIVDVSHNQIEDEE-VI---EVF 154 (207)
Q Consensus 84 ~~~~L~~L~l~~~-~~~~~--~~-~~~~~~L~~L~l~~n~i~~~~-~~~~l~~~~~L~~L~l~~n~l~~~~-~~---~~~ 154 (207)
++.+|+.+.+..+ .++.. .. -.+.+.|+.+++-++...... ....-.+++.|+.+.++.+.....+ +. ..-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 4455666666655 23322 11 223456777776666432211 2334466778888888876443321 11 111
Q ss_pred ccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcccCHHhhhhhh
Q psy10233 155 GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAE 205 (207)
Q Consensus 155 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~ 205 (207)
..+..+..+.+++++. +++.....+..|++|+.+++.++....+++.+
T Consensus 398 c~~~~l~~lEL~n~p~---i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPL---ITDATLEHLSICRNLERIELIDCQDVTKEAIS 445 (483)
T ss_pred ccccccceeeecCCCC---chHHHHHHHhhCcccceeeeechhhhhhhhhH
Confidence 3445677788888874 35555567788888888887776666555443
No 70
>KOG3763|consensus
Probab=95.20 E-value=0.025 Score=47.10 Aligned_cols=92 Identities=28% Similarity=0.422 Sum_probs=64.8
Q ss_pred CCCCCcEEEcCCCccCCcccccc-CCCCCCccEEEccCC--CCCChhhHHHhccCCCCcEEEcCCCccccchhh---HHH
Q psy10233 106 CLPVLRTLHLSHNRLKTIEDIEH-LKDCPLLSIVDVSHN--QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN---YRR 179 (207)
Q Consensus 106 ~~~~L~~L~l~~n~i~~~~~~~~-l~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~---~~~ 179 (207)
+.+.+..+++++|++..+..... -...|.|..|+|++| .+....-..-++.+ .|+.|-+.+|++++.... +..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCccccchhhhHHHHH
Confidence 34678889999998877655433 345689999999999 55543323344444 589999999998875442 233
Q ss_pred HHHHhCCcceeccCcccCH
Q psy10233 180 MFINLCVNLRHLDDYPVFD 198 (207)
Q Consensus 180 ~~~~~~~~L~~L~~~~~~~ 198 (207)
.+....|+|..||...+..
T Consensus 295 ~i~~~FPKL~~LDG~ev~~ 313 (585)
T KOG3763|consen 295 AIRELFPKLLRLDGVEVQP 313 (585)
T ss_pred HHHHhcchheeecCcccCc
Confidence 4556889999999876654
No 71
>KOG3864|consensus
Probab=95.07 E-value=0.012 Score=42.81 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=16.1
Q ss_pred CCccEEEccCC-CCCChhhHHHhccCCCCcEEEcCCCc
Q psy10233 133 PLLSIVDVSHN-QIEDEEVIEVFGAMPELRVLTLSHNP 169 (207)
Q Consensus 133 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~l~l~~n~ 169 (207)
++|+.|+++.| +|++. -...+..+++|+.|.+.+-+
T Consensus 151 ~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred cchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCch
Confidence 34555555543 33333 23333444555555444443
No 72
>KOG4308|consensus
Probab=94.90 E-value=0.00069 Score=56.26 Aligned_cols=159 Identities=23% Similarity=0.217 Sum_probs=96.9
Q ss_pred CccCCCCCCEEEeecCCccCc------cCCccC-CCCCEEEeecCcccccc------CCccccCCcEEecCCCccccc--
Q psy10233 37 NLEEYTGLKCLWLENNGISKI------ENLDAQ-TEMRSIYMHHNLVKVME------NLSHMQLLDTINLSHNFIEKI-- 101 (207)
Q Consensus 37 ~l~~l~~L~~L~l~~~~l~~~------~~~~~l-~~L~~L~l~~n~~~~~~------~~~~~~~L~~L~l~~~~~~~~-- 101 (207)
.+.....|+.|++++|.+... ..+... +.++++++..|.++... .+.....++.++++.|.+...
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence 445667777788888877642 112222 45666777777664332 244566777788887766322
Q ss_pred ----cCCC----CCCCCcEEEcCCCccCCccc---cccCCCCCC-ccEEEccCCCCCChhhHH---HhccC-CCCcEEEc
Q psy10233 102 ----ENLS----CLPVLRTLHLSHNRLKTIED---IEHLKDCPL-LSIVDVSHNQIEDEEVIE---VFGAM-PELRVLTL 165 (207)
Q Consensus 102 ----~~~~----~~~~L~~L~l~~n~i~~~~~---~~~l~~~~~-L~~L~l~~n~l~~~~~~~---~~~~~-~~L~~l~l 165 (207)
+.+. ...+++.|++.+|.++...- ...+...++ +..+++..|.+.+..... .+..+ +.++.+++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL 269 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence 1222 35678888888887764211 123445554 566888888777643222 33333 45678888
Q ss_pred CCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 166 SHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 166 ~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
+.|.+++.-.......+..|+.++.+.+..
T Consensus 270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~ 299 (478)
T KOG4308|consen 270 SRNSITEKGVRDLAEVLVSCRQLEELSLSN 299 (478)
T ss_pred hcCCccccchHHHHHHHhhhHHHHHhhccc
Confidence 888887766666666777777777776653
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.10 E-value=0.043 Score=23.12 Aligned_cols=13 Identities=38% Similarity=0.527 Sum_probs=4.7
Q ss_pred CCCEEEeecCCcc
Q psy10233 43 GLKCLWLENNGIS 55 (207)
Q Consensus 43 ~L~~L~l~~~~l~ 55 (207)
+|+.|++++|.+.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444555554443
No 74
>KOG4341|consensus
Probab=92.95 E-value=0.041 Score=44.48 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=34.8
Q ss_pred CCCCCCccEEEccCC-CCCChhhHHHhccCCCCcEEEcCCCccccchhhHHH-HHHHhCCcceeccCcccCHH
Q psy10233 129 LKDCPLLSIVDVSHN-QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRR-MFINLCVNLRHLDDYPVFDK 199 (207)
Q Consensus 129 l~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~-~~~~~~~~L~~L~~~~~~~~ 199 (207)
...++++++|.+.++ .+++......-..++.|+++++..|... .+... .+...|++|++++++.++..
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~i---T~~~Lk~la~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSI---TDVSLKYLAEGCRKLKYLNLSWCPQI 229 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchh---HHHHHHHHHHhhhhHHHhhhccCchh
Confidence 344556666655554 3444444445555666666666654322 11111 14556666666666655443
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.58 E-value=0.08 Score=23.85 Aligned_cols=11 Identities=45% Similarity=0.483 Sum_probs=4.5
Q ss_pred cEEEcCCCccC
Q psy10233 111 RTLHLSHNRLK 121 (207)
Q Consensus 111 ~~L~l~~n~i~ 121 (207)
++|++++|.++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444433
No 76
>KOG3864|consensus
Probab=92.51 E-value=0.094 Score=38.35 Aligned_cols=84 Identities=21% Similarity=0.214 Sum_probs=47.0
Q ss_pred CCCcEEEcCCCccCCccccccCCCCCCccEEEccCC-CCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCC
Q psy10233 108 PVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN-QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCV 186 (207)
Q Consensus 108 ~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~ 186 (207)
..++.++-++..|...+- ..+..++.++.+.+.++ .+.++.+...-+..++|+.|++++|+.. .+.=..-+.+++
T Consensus 101 ~~IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rI---T~~GL~~L~~lk 176 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGL-EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRI---TDGGLACLLKLK 176 (221)
T ss_pred ceEEEEecCCchHHHHHH-HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCee---chhHHHHHHHhh
Confidence 345667777766655332 45666667777777666 3334432223334467888888877633 222222355666
Q ss_pred cceeccCcc
Q psy10233 187 NLRHLDDYP 195 (207)
Q Consensus 187 ~L~~L~~~~ 195 (207)
+|+.|.++.
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 666665543
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.74 E-value=0.32 Score=22.20 Aligned_cols=15 Identities=40% Similarity=0.598 Sum_probs=7.0
Q ss_pred CCCcEEEcCCCcccc
Q psy10233 158 PELRVLTLSHNPCVG 172 (207)
Q Consensus 158 ~~L~~l~l~~n~~~~ 172 (207)
++|+.|++++|.+++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 455556666555543
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.68 E-value=0.34 Score=22.58 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=8.4
Q ss_pred CCCCEEEeecCCccCc
Q psy10233 42 TGLKCLWLENNGISKI 57 (207)
Q Consensus 42 ~~L~~L~l~~~~l~~~ 57 (207)
++|+.|++++|.+..+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3455555555555544
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.68 E-value=0.34 Score=22.58 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=8.4
Q ss_pred CCCCEEEeecCCccCc
Q psy10233 42 TGLKCLWLENNGISKI 57 (207)
Q Consensus 42 ~~L~~L~l~~~~l~~~ 57 (207)
++|+.|++++|.+..+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3455555555555544
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.90 E-value=0.4 Score=22.65 Aligned_cols=16 Identities=50% Similarity=0.476 Sum_probs=8.3
Q ss_pred CCCCEEEeecCCccCc
Q psy10233 42 TGLKCLWLENNGISKI 57 (207)
Q Consensus 42 ~~L~~L~l~~~~l~~~ 57 (207)
++|+.|+++.|.|..+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 3455555555555443
No 81
>KOG3763|consensus
Probab=86.53 E-value=0.52 Score=39.62 Aligned_cols=63 Identities=24% Similarity=0.369 Sum_probs=35.7
Q ss_pred cccCCcEEecCCCccccccC----CCCCCCCcEEEcCCC--ccCCccccccCCCCCCccEEEccCCCCCC
Q psy10233 84 HMQLLDTINLSHNFIEKIEN----LSCLPVLRTLHLSHN--RLKTIEDIEHLKDCPLLSIVDVSHNQIED 147 (207)
Q Consensus 84 ~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~n--~i~~~~~~~~l~~~~~L~~L~l~~n~l~~ 147 (207)
+.+.+..+.+++|++..+.. .+..|+|..|+|++| .+........++. ..|++|.+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCcccc
Confidence 44556667777777665522 223367777777777 4433222222333 246777777777664
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=84.42 E-value=1.1 Score=21.41 Aligned_cols=12 Identities=33% Similarity=0.559 Sum_probs=5.4
Q ss_pred ccEEEccCCCCC
Q psy10233 135 LSIVDVSHNQIE 146 (207)
Q Consensus 135 L~~L~l~~n~l~ 146 (207)
|+.|+|++|.+.
T Consensus 4 L~~LdL~~N~i~ 15 (28)
T smart00368 4 LRELDLSNNKLG 15 (28)
T ss_pred cCEEECCCCCCC
Confidence 444444444443
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.82 E-value=1.5 Score=20.73 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=9.8
Q ss_pred CCCEEEeecCCccCccC
Q psy10233 43 GLKCLWLENNGISKIEN 59 (207)
Q Consensus 43 ~L~~L~l~~~~l~~~~~ 59 (207)
+|+.|++++|.+..+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45556666666655554
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=71.82 E-value=2.6 Score=19.56 Aligned_cols=13 Identities=46% Similarity=0.552 Sum_probs=8.4
Q ss_pred CCCCcEEEcCCCc
Q psy10233 157 MPELRVLTLSHNP 169 (207)
Q Consensus 157 ~~~L~~l~l~~n~ 169 (207)
+++|+.|++++|+
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3566677777665
No 85
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=64.85 E-value=5.9 Score=18.68 Aligned_cols=20 Identities=40% Similarity=0.637 Sum_probs=15.5
Q ss_pred hHHHHHHHhCCcceeccCcc
Q psy10233 176 NYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 176 ~~~~~~~~~~~~L~~L~~~~ 195 (207)
.++..++..+|+|+.||...
T Consensus 3 ~YR~~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 3 HYREKVIRLLPQLRKLDXXX 22 (26)
T ss_pred cHHHHHHHHCCccceecccc
Confidence 35566789999999998754
No 86
>KOG0473|consensus
Probab=64.38 E-value=0.17 Score=38.01 Aligned_cols=83 Identities=11% Similarity=0.128 Sum_probs=43.3
Q ss_pred CccCCCCCCEEEeecCCccCcc-CCccCCCCCEEEeecCcccccc-CCccccCCcEEecCCCcccccc-CCCCCCCCcEE
Q psy10233 37 NLEEYTGLKCLWLENNGISKIE-NLDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHNFIEKIE-NLSCLPVLRTL 113 (207)
Q Consensus 37 ~l~~l~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L 113 (207)
++..+...+.||++.|.+.... .+.-+..+..++++.|.+...+ .+.....+..++.-.|..+..| +....++++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 3445556666666666655542 3555555666666666654433 2333333444444455555554 24444555555
Q ss_pred EcCCCc
Q psy10233 114 HLSHNR 119 (207)
Q Consensus 114 ~l~~n~ 119 (207)
+..++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 555554
No 87
>KOG0473|consensus
Probab=63.87 E-value=0.12 Score=38.77 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=59.6
Q ss_pred cccCCcEEecCCCccccc-cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcE
Q psy10233 84 HMQLLDTINLSHNFIEKI-ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRV 162 (207)
Q Consensus 84 ~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 162 (207)
.....+.||++.|.+-.+ ..++.+..+..++++.|.+.-.+. .++....++++++..|..+. .|..++..|+++.
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~--d~~q~~e~~~~~~~~n~~~~--~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPK--DAKQQRETVNAASHKNNHSQ--QPKSQKKEPHPKK 115 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChh--hHHHHHHHHHHHhhccchhh--CCccccccCCcch
Confidence 344556778888776555 346666778888888887765443 45555667777777887765 5778888888888
Q ss_pred EEcCCCccc
Q psy10233 163 LTLSHNPCV 171 (207)
Q Consensus 163 l~l~~n~~~ 171 (207)
++.-.|++.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 888888854
No 88
>KOG4308|consensus
Probab=60.97 E-value=0.67 Score=38.87 Aligned_cols=154 Identities=24% Similarity=0.237 Sum_probs=89.6
Q ss_pred EEeecCCCcCc------cCccCC-CCCCEEEeecCCccCc------cCCccCCCCCEEEeecCccccc------cCC---
Q psy10233 25 LYLHFKGYTVI------ENLEEY-TGLKCLWLENNGISKI------ENLDAQTEMRSIYMHHNLVKVM------ENL--- 82 (207)
Q Consensus 25 l~l~~~~~~~~------~~l~~l-~~L~~L~l~~~~l~~~------~~~~~l~~L~~L~l~~n~~~~~------~~~--- 82 (207)
++++.|++... ..+... +.++.|++..+.+... ..+.....++.++++.|.+... ..+
T Consensus 120 L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~ 199 (478)
T KOG4308|consen 120 LDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESA 199 (478)
T ss_pred hhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhh
Confidence 56666666421 122222 3455566666665543 1134467777888888766311 112
Q ss_pred -ccccCCcEEecCCCccccc------cCCCCCCC-CcEEEcCCCccCCccc---cccCCCC-CCccEEEccCCCCCChh-
Q psy10233 83 -SHMQLLDTINLSHNFIEKI------ENLSCLPV-LRTLHLSHNRLKTIED---IEHLKDC-PLLSIVDVSHNQIEDEE- 149 (207)
Q Consensus 83 -~~~~~L~~L~l~~~~~~~~------~~~~~~~~-L~~L~l~~n~i~~~~~---~~~l~~~-~~L~~L~l~~n~l~~~~- 149 (207)
....+++.|.+.++.++.. ..+...++ +..+++..|.+.+... ...+..+ +.+++++++.|.+++.+
T Consensus 200 ~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~ 279 (478)
T KOG4308|consen 200 ASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGV 279 (478)
T ss_pred hcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccch
Confidence 2356677788888776532 12444444 5668888887765311 1223444 56788888888887633
Q ss_pred --hHHHhccCCCCcEEEcCCCccccchhhHH
Q psy10233 150 --VIEVFGAMPELRVLTLSHNPCVGKIKNYR 178 (207)
Q Consensus 150 --~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 178 (207)
..+....+++++.+.++.|++....-...
T Consensus 280 ~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~ 310 (478)
T KOG4308|consen 280 RDLAEVLVSCRQLEELSLSNNPLTDYGVELL 310 (478)
T ss_pred HHHHHHHhhhHHHHHhhcccCccccHHHHHH
Confidence 33455667788888888888765444443
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=43.38 E-value=19 Score=36.87 Aligned_cols=33 Identities=33% Similarity=0.379 Sum_probs=24.8
Q ss_pred EcCCCccCCccccccCCCCCCccEEEccCCCCCC
Q psy10233 114 HLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147 (207)
Q Consensus 114 ~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~ 147 (207)
||++|.|+.++. ..+..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~-g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEE-GICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccCh-HHhccCCCceEEEeeCCcccc
Confidence 467888877655 667778888888888887664
No 90
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=31.96 E-value=39 Score=15.69 Aligned_cols=6 Identities=0% Similarity=0.207 Sum_probs=2.2
Q ss_pred EEEccC
Q psy10233 137 IVDVSH 142 (207)
Q Consensus 137 ~L~l~~ 142 (207)
+|++..
T Consensus 4 tL~L~~ 9 (26)
T PF07723_consen 4 TLHLDS 9 (26)
T ss_pred EEEeeE
Confidence 333333
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.15 E-value=44 Score=34.47 Aligned_cols=34 Identities=29% Similarity=0.248 Sum_probs=25.4
Q ss_pred ecCCCcccccc--CCCCCCCCcEEEcCCCccCCccc
Q psy10233 92 NLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIED 125 (207)
Q Consensus 92 ~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~ 125 (207)
||++|.+..++ .+..+++|+.|+|++|.+.--..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 57888888775 37778889999999987754333
No 92
>KOG3735|consensus
Probab=22.45 E-value=87 Score=25.18 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=11.3
Q ss_pred CCCCCccEEEccCCCCCChhhHH
Q psy10233 130 KDCPLLSIVDVSHNQIEDEEVIE 152 (207)
Q Consensus 130 ~~~~~L~~L~l~~n~l~~~~~~~ 152 (207)
..++.|++|++..|.|++.++..
T Consensus 252 ~~n~sl~slnvesnFItg~gi~a 274 (353)
T KOG3735|consen 252 KENKSLTSLNVESNFITGLGIMA 274 (353)
T ss_pred hhcchhhheeccccccccHHHHH
Confidence 33445555555555555544433
Done!