Query psy10233
Match_columns 207
No_of_seqs 126 out of 1918
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 21:18:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rfs_A Internalin B, repeat mo 99.9 8.7E-21 3E-25 144.8 14.9 167 22-194 43-213 (272)
2 1h6u_A Internalin H; cell adhe 99.8 6.5E-20 2.2E-24 142.4 15.3 144 22-171 43-186 (308)
3 2o6q_A Variable lymphocyte rec 99.8 1.4E-19 4.8E-24 137.9 16.7 169 21-195 38-214 (270)
4 1h6t_A Internalin B; cell adhe 99.8 3.9E-20 1.3E-24 142.6 13.2 163 21-195 47-209 (291)
5 1h6u_A Internalin H; cell adhe 99.8 1E-19 3.5E-24 141.3 14.7 164 20-195 63-226 (308)
6 3m19_A Variable lymphocyte rec 99.8 1.1E-19 3.7E-24 137.1 14.3 151 21-173 36-194 (251)
7 4fcg_A Uncharacterized protein 99.8 1.2E-20 4.2E-25 147.7 8.2 168 21-195 82-286 (328)
8 3rfs_A Internalin B, repeat mo 99.8 4.5E-19 1.5E-23 135.3 15.6 155 20-176 63-223 (272)
9 1ozn_A Reticulon 4 receptor; N 99.8 3.1E-19 1E-23 136.9 14.5 169 21-195 33-234 (285)
10 4fcg_A Uncharacterized protein 99.8 8.1E-20 2.8E-24 143.1 11.3 167 22-194 106-309 (328)
11 1p9a_G Platelet glycoprotein I 99.8 4.4E-19 1.5E-23 136.6 14.7 168 20-194 31-203 (290)
12 1ozn_A Reticulon 4 receptor; N 99.8 9.1E-19 3.1E-23 134.3 16.3 154 21-176 81-243 (285)
13 2o6q_A Variable lymphocyte rec 99.8 7.6E-19 2.6E-23 133.8 15.4 179 9-195 4-190 (270)
14 1m9s_A Internalin B; cell inva 99.8 2.5E-19 8.6E-24 150.5 13.8 163 21-195 44-206 (605)
15 4fmz_A Internalin; leucine ric 99.8 1.1E-18 3.7E-23 137.3 16.2 164 22-195 157-342 (347)
16 4ezg_A Putative uncharacterize 99.8 6.7E-19 2.3E-23 128.1 13.0 147 39-195 41-190 (197)
17 1xeu_A Internalin C; cellular 99.8 5.4E-20 1.8E-24 139.8 7.3 146 21-173 42-187 (263)
18 3m19_A Variable lymphocyte rec 99.8 2E-18 6.8E-23 130.2 15.8 180 7-195 2-188 (251)
19 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-19 4.1E-24 141.2 9.3 164 9-175 33-214 (313)
20 1xeu_A Internalin C; cellular 99.8 3.4E-19 1.2E-23 135.4 10.9 158 25-195 24-181 (263)
21 1h6t_A Internalin B; cell adhe 99.8 7.2E-20 2.5E-24 141.1 7.2 147 20-172 68-214 (291)
22 1a9n_A U2A', U2A'; complex (nu 99.8 2.5E-19 8.7E-24 128.1 9.4 146 60-207 15-161 (176)
23 3zyi_A Leucine-rich repeat-con 99.8 1.6E-18 5.6E-23 141.1 14.8 147 21-171 76-255 (452)
24 3zyj_A Leucine-rich repeat-con 99.8 1.5E-18 5E-23 140.9 14.2 168 21-194 89-287 (440)
25 3zyi_A Leucine-rich repeat-con 99.8 2.2E-18 7.5E-23 140.4 15.0 170 20-195 99-299 (452)
26 4fmz_A Internalin; leucine ric 99.8 7.8E-18 2.7E-22 132.4 17.2 166 21-196 133-321 (347)
27 2z66_A Variable lymphocyte rec 99.8 3.6E-19 1.2E-23 137.9 9.3 170 21-195 29-232 (306)
28 4ezg_A Putative uncharacterize 99.8 9.2E-19 3.1E-23 127.4 10.8 146 21-172 45-195 (197)
29 2z80_A TOLL-like receptor 2, v 99.8 1.6E-18 5.4E-23 136.9 11.1 169 21-195 53-231 (353)
30 2z62_A TOLL-like receptor 4, v 99.8 3.4E-18 1.2E-22 130.5 12.2 180 10-194 14-232 (276)
31 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-17 3.7E-22 123.8 14.5 150 23-175 14-170 (220)
32 3e6j_A Variable lymphocyte rec 99.8 1.6E-17 5.5E-22 123.6 15.4 169 23-195 22-199 (229)
33 2xwt_C Thyrotropin receptor; s 99.8 1.9E-18 6.4E-23 129.3 10.4 170 19-195 30-214 (239)
34 2v9t_B SLIT homolog 2 protein 99.8 1.2E-17 4.1E-22 123.6 14.7 149 23-175 14-169 (220)
35 1p9a_G Platelet glycoprotein I 99.8 2.2E-17 7.5E-22 127.1 16.1 152 20-174 55-211 (290)
36 2z66_A Variable lymphocyte rec 99.8 3.1E-18 1E-22 132.6 11.1 168 22-195 80-257 (306)
37 3zyj_A Leucine-rich repeat-con 99.8 9.4E-18 3.2E-22 136.2 14.0 168 21-194 65-263 (440)
38 1o6v_A Internalin A; bacterial 99.8 1.4E-17 4.9E-22 136.1 14.9 158 25-194 226-383 (466)
39 2id5_A Lingo-1, leucine rich r 99.8 8.9E-18 3.1E-22 137.5 13.5 170 20-195 32-209 (477)
40 1o6v_A Internalin A; bacterial 99.8 3.5E-17 1.2E-21 133.7 16.7 144 22-171 179-322 (466)
41 1ogq_A PGIP-2, polygalacturona 99.8 5.4E-18 1.9E-22 131.8 11.1 78 110-194 199-276 (313)
42 2o6s_A Variable lymphocyte rec 99.8 5.3E-17 1.8E-21 118.9 15.7 150 24-176 11-166 (208)
43 2xwt_C Thyrotropin receptor; s 99.7 1.5E-17 5.2E-22 124.4 12.2 167 20-196 55-236 (239)
44 1m9s_A Internalin B; cell inva 99.7 1.8E-17 6.2E-22 139.2 14.0 148 20-173 65-212 (605)
45 2o6s_A Variable lymphocyte rec 99.7 1.3E-17 4.6E-22 122.1 11.5 148 21-177 29-184 (208)
46 3o6n_A APL1; leucine-rich repe 99.7 4.4E-17 1.5E-21 130.1 13.9 100 23-122 72-179 (390)
47 3rgz_A Protein brassinosteroid 99.7 3.9E-17 1.3E-21 141.0 14.3 168 22-195 468-713 (768)
48 3rgz_A Protein brassinosteroid 99.7 2.7E-17 9.2E-22 142.0 13.0 166 8-176 38-265 (768)
49 4eco_A Uncharacterized protein 99.7 1.9E-18 6.5E-23 146.3 5.2 181 8-195 65-362 (636)
50 4g8a_A TOLL-like receptor 4; l 99.7 7.8E-17 2.7E-21 135.6 14.6 149 25-176 36-191 (635)
51 2z80_A TOLL-like receptor 2, v 99.7 4.3E-17 1.5E-21 128.6 11.8 151 20-172 76-236 (353)
52 2xot_A Amphoterin-induced prot 99.7 2.1E-16 7.1E-21 125.2 15.1 145 24-171 22-176 (361)
53 3o53_A Protein LRIM1, AGAP0063 99.7 1.4E-17 4.9E-22 129.6 8.3 147 40-194 118-270 (317)
54 3v47_A TOLL-like receptor 5B a 99.7 1.1E-16 3.9E-21 130.0 13.9 129 20-148 30-169 (455)
55 3o6n_A APL1; leucine-rich repe 99.7 1.4E-16 4.8E-21 127.2 14.2 166 21-194 94-326 (390)
56 3oja_B Anopheles plasmodium-re 99.7 1.4E-16 4.6E-21 134.0 14.6 76 23-98 102-183 (597)
57 1xku_A Decorin; proteoglycan, 99.7 2.7E-16 9.1E-21 122.9 15.4 167 21-194 53-271 (330)
58 4g8a_A TOLL-like receptor 4; l 99.7 4.5E-17 1.6E-21 137.0 11.7 161 10-171 38-214 (635)
59 2z62_A TOLL-like receptor 4, v 99.7 1.4E-16 4.9E-21 121.5 13.4 149 25-176 12-167 (276)
60 2z63_A TOLL-like receptor 4, v 99.7 4.5E-17 1.6E-21 135.8 11.5 180 10-195 14-209 (570)
61 3t6q_A CD180 antigen; protein- 99.7 2.1E-16 7.2E-21 132.8 15.5 171 19-196 32-212 (606)
62 1ziw_A TOLL-like receptor 3; i 99.7 2.2E-16 7.4E-21 134.4 15.4 168 20-193 25-202 (680)
63 3vq2_A TLR4, TOLL-like recepto 99.7 4.9E-17 1.7E-21 136.7 11.3 166 23-195 379-554 (606)
64 3o53_A Protein LRIM1, AGAP0063 99.7 2.4E-17 8.2E-22 128.3 8.7 167 21-195 35-223 (317)
65 2je0_A Acidic leucine-rich nuc 99.7 1.4E-16 4.6E-21 110.7 11.7 130 63-194 16-148 (149)
66 3oja_A Leucine-rich immune mol 99.7 4.4E-17 1.5E-21 133.9 10.5 167 21-195 35-223 (487)
67 3oja_B Anopheles plasmodium-re 99.7 2.8E-16 9.5E-21 132.1 15.6 101 22-122 77-185 (597)
68 1xku_A Decorin; proteoglycan, 99.7 2.2E-16 7.6E-21 123.4 13.7 107 86-195 192-302 (330)
69 3bz5_A Internalin-J, INLJ; leu 99.7 3.3E-16 1.1E-20 127.7 15.1 161 21-195 43-221 (457)
70 1wwl_A Monocyte differentiatio 99.7 4E-17 1.4E-21 126.8 9.1 151 21-171 96-266 (312)
71 2ell_A Acidic leucine-rich nuc 99.7 5.3E-17 1.8E-21 115.0 8.8 131 41-171 23-160 (168)
72 1a9n_A U2A', U2A'; complex (nu 99.7 3E-17 1E-21 117.2 7.4 134 36-171 13-153 (176)
73 2z81_A CD282 antigen, TOLL-lik 99.7 9.9E-17 3.4E-21 133.3 11.7 169 21-195 27-205 (549)
74 2xot_A Amphoterin-induced prot 99.7 2.6E-16 9E-21 124.6 13.5 154 20-175 39-206 (361)
75 3v47_A TOLL-like receptor 5B a 99.7 4.2E-16 1.4E-20 126.7 15.0 42 129-171 343-384 (455)
76 2v9t_B SLIT homolog 2 protein 99.7 2.8E-16 9.5E-21 116.2 12.7 143 45-195 14-161 (220)
77 2v70_A SLIT-2, SLIT homolog 2 99.7 2.5E-16 8.6E-21 116.4 12.4 145 44-195 13-162 (220)
78 3vq2_A TLR4, TOLL-like recepto 99.7 1.2E-16 4.3E-21 134.2 11.4 150 21-171 33-194 (606)
79 2z81_A CD282 antigen, TOLL-lik 99.7 6.4E-17 2.2E-21 134.4 9.3 165 26-195 11-181 (549)
80 2ft3_A Biglycan; proteoglycan, 99.7 3.6E-16 1.2E-20 122.4 12.7 166 21-194 79-272 (332)
81 2ft3_A Biglycan; proteoglycan, 99.7 2.7E-16 9.2E-21 123.1 12.0 169 21-195 55-250 (332)
82 3bz5_A Internalin-J, INLJ; leu 99.7 9.7E-16 3.3E-20 125.0 15.5 139 22-171 66-225 (457)
83 2ell_A Acidic leucine-rich nuc 99.7 1.4E-16 4.6E-21 112.9 9.2 137 62-200 22-161 (168)
84 2id5_A Lingo-1, leucine rich r 99.7 4.9E-16 1.7E-20 127.2 13.7 166 23-195 14-185 (477)
85 3t6q_A CD180 antigen; protein- 99.7 5.8E-16 2E-20 130.1 14.5 82 106-194 474-555 (606)
86 1wwl_A Monocyte differentiatio 99.7 8.4E-17 2.9E-21 125.0 8.5 165 21-195 122-305 (312)
87 3e6j_A Variable lymphocyte rec 99.7 7.8E-16 2.7E-20 114.5 13.2 145 43-195 20-168 (229)
88 2z7x_B TOLL-like receptor 1, v 99.7 8.4E-16 2.9E-20 127.0 14.4 164 23-195 305-477 (520)
89 3oja_A Leucine-rich immune mol 99.7 1.3E-16 4.4E-21 131.1 9.2 146 40-193 118-269 (487)
90 3cvr_A Invasion plasmid antige 99.7 1.1E-15 3.6E-20 127.5 14.7 141 22-177 82-249 (571)
91 2z63_A TOLL-like receptor 4, v 99.7 1.2E-15 4.2E-20 127.1 14.0 165 24-194 11-185 (570)
92 1ziw_A TOLL-like receptor 3; i 99.7 1.2E-15 4.1E-20 129.9 13.8 167 23-195 7-180 (680)
93 1w8a_A SLIT protein; signaling 99.7 1.6E-15 5.3E-20 109.9 12.1 120 24-146 12-139 (192)
94 1ds9_A Outer arm dynein; leuci 99.7 3.9E-18 1.3E-22 124.2 -1.7 142 60-204 44-192 (198)
95 2ast_B S-phase kinase-associat 99.7 7.2E-17 2.5E-21 126.3 5.2 155 38-196 89-257 (336)
96 3cvr_A Invasion plasmid antige 99.7 3.9E-15 1.3E-19 124.1 15.9 125 23-158 123-254 (571)
97 2je0_A Acidic leucine-rich nuc 99.7 1.7E-16 5.7E-21 110.2 6.5 127 41-167 16-149 (149)
98 3j0a_A TOLL-like receptor 5; m 99.6 5.7E-16 2E-20 135.0 11.1 157 18-175 22-191 (844)
99 3j0a_A TOLL-like receptor 5; m 99.6 1.4E-15 4.8E-20 132.6 13.5 153 23-177 7-167 (844)
100 4glp_A Monocyte differentiatio 99.6 2.8E-16 9.6E-21 121.9 7.7 145 40-195 143-303 (310)
101 1jl5_A Outer protein YOPM; leu 99.6 6.3E-15 2.2E-19 120.1 15.5 138 22-171 133-270 (454)
102 4eco_A Uncharacterized protein 99.6 9.8E-16 3.4E-20 129.7 11.1 152 21-175 306-473 (636)
103 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 4.7E-15 1.6E-19 123.7 14.7 133 39-175 350-514 (562)
104 4ecn_A Leucine-rich repeat pro 99.6 4.4E-16 1.5E-20 135.4 8.7 124 21-146 492-632 (876)
105 2z7x_B TOLL-like receptor 1, v 99.6 3.7E-15 1.3E-19 123.2 13.2 151 19-175 323-485 (520)
106 2o6r_A Variable lymphocyte rec 99.6 9.2E-15 3.2E-19 104.3 13.6 129 44-175 9-141 (177)
107 2ast_B S-phase kinase-associat 99.6 1.1E-16 3.7E-21 125.3 3.6 181 12-197 39-233 (336)
108 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 8.5E-15 2.9E-19 122.2 14.8 127 20-147 353-511 (562)
109 1jl5_A Outer protein YOPM; leu 99.6 1.7E-14 5.8E-19 117.6 16.1 120 43-172 132-251 (454)
110 2wfh_A SLIT homolog 2 protein 99.6 1E-14 3.5E-19 105.7 12.7 124 46-172 14-140 (193)
111 4ecn_A Leucine-rich repeat pro 99.6 1.4E-14 4.7E-19 126.1 14.8 153 21-175 549-713 (876)
112 4glp_A Monocyte differentiatio 99.6 3.5E-15 1.2E-19 115.7 8.3 165 22-194 93-280 (310)
113 3g06_A SSPH2 (leucine-rich rep 99.6 6.3E-14 2.2E-18 118.1 16.3 125 42-179 181-305 (622)
114 1ds9_A Outer arm dynein; leuci 99.6 4.6E-17 1.6E-21 118.4 -3.1 132 37-171 43-185 (198)
115 2ca6_A RAN GTPase-activating p 99.6 2.1E-15 7.1E-20 120.3 5.5 129 64-195 159-312 (386)
116 1w8a_A SLIT protein; signaling 99.6 7.6E-14 2.6E-18 100.9 13.1 128 45-176 11-144 (192)
117 2o6r_A Variable lymphocyte rec 99.6 1.6E-13 5.5E-18 97.8 14.3 124 23-148 10-139 (177)
118 2ca6_A RAN GTPase-activating p 99.6 2.4E-15 8E-20 120.0 5.1 158 39-196 91-284 (386)
119 1dce_A Protein (RAB geranylger 99.5 1.4E-14 4.9E-19 120.9 9.6 125 65-193 442-567 (567)
120 2wfh_A SLIT homolog 2 protein 99.5 1.2E-13 4.2E-18 99.9 12.9 123 23-147 13-140 (193)
121 3g06_A SSPH2 (leucine-rich rep 99.5 2E-13 6.9E-18 115.0 16.0 114 64-196 181-294 (622)
122 1dce_A Protein (RAB geranylger 99.5 3.3E-14 1.1E-18 118.7 10.6 123 43-165 442-567 (567)
123 4ay9_X Follicle-stimulating ho 99.5 4.7E-14 1.6E-18 111.1 9.8 178 10-194 16-234 (350)
124 3goz_A Leucine-rich repeat-con 99.5 1.9E-14 6.4E-19 113.9 7.3 101 21-121 23-151 (362)
125 3goz_A Leucine-rich repeat-con 99.5 1.6E-14 5.6E-19 114.3 6.1 173 25-197 3-207 (362)
126 4b8c_D Glucose-repressible alc 99.5 8.9E-15 3E-19 125.5 3.6 109 38-148 220-331 (727)
127 1z7x_W Ribonuclease inhibitor; 99.5 3.6E-14 1.2E-18 115.4 6.9 174 22-195 87-293 (461)
128 1z7x_W Ribonuclease inhibitor; 99.4 3.9E-14 1.3E-18 115.2 3.8 156 39-195 167-350 (461)
129 4b8c_D Glucose-repressible alc 99.4 1.7E-13 5.7E-18 117.6 7.8 116 59-178 219-336 (727)
130 3g39_A Variable lymphocyte rec 99.4 3.3E-12 1.1E-16 90.5 10.7 101 44-146 11-115 (170)
131 3g39_A Variable lymphocyte rec 99.4 1.1E-11 3.9E-16 87.7 11.6 108 65-175 10-119 (170)
132 2r9u_A Variable lymphocyte rec 99.3 1.5E-11 5E-16 87.5 11.8 100 45-147 15-119 (174)
133 2r9u_A Variable lymphocyte rec 99.3 1.1E-11 3.7E-16 88.2 10.9 105 66-174 14-121 (174)
134 4ay9_X Follicle-stimulating ho 99.3 2E-11 6.9E-16 96.1 12.2 165 21-195 55-255 (350)
135 3un9_A NLR family member X1; l 99.3 1E-12 3.6E-17 104.3 2.4 154 22-175 74-256 (372)
136 3sb4_A Hypothetical leucine ri 99.2 1.2E-10 4.1E-15 90.8 10.0 35 41-76 100-136 (329)
137 2ifg_A High affinity nerve gro 99.1 9.9E-11 3.4E-15 91.9 8.1 98 25-122 13-117 (347)
138 2ifg_A High affinity nerve gro 99.1 1.9E-10 6.6E-15 90.2 9.2 101 45-147 11-117 (347)
139 3un9_A NLR family member X1; l 99.1 5.3E-12 1.8E-16 100.3 0.2 156 41-196 71-249 (372)
140 3ogk_B Coronatine-insensitive 99.1 2.1E-10 7.2E-15 95.9 7.9 149 40-194 162-350 (592)
141 3sb4_A Hypothetical leucine ri 99.1 2.4E-10 8.2E-15 89.1 7.2 144 41-193 48-304 (329)
142 3ogk_B Coronatine-insensitive 99.0 1.5E-10 5.2E-15 96.8 5.2 61 131-194 340-411 (592)
143 2p1m_B Transport inhibitor res 98.9 2.4E-09 8.1E-14 89.5 6.8 127 62-192 103-241 (594)
144 2ra8_A Uncharacterized protein 98.9 2.3E-09 7.8E-14 84.7 6.2 133 61-195 169-316 (362)
145 3rw6_A Nuclear RNA export fact 98.9 5.4E-09 1.8E-13 79.0 7.2 92 106-198 168-263 (267)
146 2p1m_B Transport inhibitor res 98.8 1E-09 3.5E-14 91.8 2.7 64 107-170 455-518 (594)
147 1io0_A Tropomodulin; LRR prote 98.8 7.7E-09 2.6E-13 74.0 6.5 111 61-171 33-164 (185)
148 2ra8_A Uncharacterized protein 98.7 3.3E-08 1.1E-12 78.1 7.3 138 38-176 168-325 (362)
149 1io0_A Tropomodulin; LRR prote 98.7 6.7E-09 2.3E-13 74.4 2.8 117 82-198 32-163 (185)
150 3e4g_A ATP synthase subunit S, 98.5 1.2E-07 4E-12 67.0 5.1 101 87-189 62-170 (176)
151 4fdw_A Leucine rich hypothetic 98.5 5.1E-07 1.8E-11 72.3 8.9 57 37-95 175-235 (401)
152 3rw6_A Nuclear RNA export fact 98.5 3E-07 1E-11 69.4 6.7 158 4-164 72-257 (267)
153 4fdw_A Leucine rich hypothetic 98.4 1.3E-06 4.5E-11 69.9 8.9 86 81-171 266-358 (401)
154 3e4g_A ATP synthase subunit S, 98.4 2.1E-07 7.1E-12 65.7 3.5 87 108-200 61-153 (176)
155 1pgv_A TMD-1, tropomodulin TMD 98.0 1.5E-05 5E-10 57.3 6.9 107 63-169 40-168 (197)
156 1pgv_A TMD-1, tropomodulin TMD 97.6 5.1E-05 1.7E-09 54.4 3.8 117 83-199 38-170 (197)
157 4gt6_A Cell surface protein; l 97.4 0.0015 5.3E-08 51.7 10.6 124 59-194 260-386 (394)
158 4fs7_A Uncharacterized protein 97.3 0.0015 5.1E-08 51.8 9.9 122 41-168 229-353 (394)
159 4fs7_A Uncharacterized protein 97.3 0.0023 7.9E-08 50.7 10.9 142 38-191 249-393 (394)
160 4h09_A Hypothetical leucine ri 97.1 0.0068 2.3E-07 47.6 11.2 103 82-193 236-340 (379)
161 4h09_A Hypothetical leucine ri 97.0 0.0054 1.8E-07 48.2 10.2 124 39-168 214-343 (379)
162 4gt6_A Cell surface protein; l 97.0 0.0062 2.1E-07 48.2 10.4 106 81-195 260-366 (394)
163 3rfe_A Platelet glycoprotein I 96.6 0.0052 1.8E-07 40.9 5.8 55 90-146 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0062 2.1E-07 40.5 6.1 56 112-172 12-69 (130)
165 2lz0_A Uncharacterized protein 44.6 23 0.00078 21.8 3.3 37 128-166 15-51 (100)
No 1
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=8.7e-21 Score=144.80 Aligned_cols=167 Identities=19% Similarity=0.259 Sum_probs=109.7
Q ss_pred CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccC--CccccCCcEEecCCCccc
Q psy10233 22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIE 99 (207)
Q Consensus 22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~~~~~ 99 (207)
.+.+.+..++++.++.++.+++|+.|++++|.+..++.+..+++|++|++++|.++.++. +..+++|++|++++|.++
T Consensus 43 L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 122 (272)
T 3rfs_A 43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122 (272)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred eeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCC
Confidence 445666666666666677777777777777777766666677777777777777665533 566777777777777776
Q ss_pred cccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhH
Q psy10233 100 KIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNY 177 (207)
Q Consensus 100 ~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 177 (207)
.++. +..+++|+.|++++|.+++++. ..+..+++|+.|++++|.+++. .+..++.+++|+.|++++|.+.+..+.
T Consensus 123 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~- 199 (272)
T 3rfs_A 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQLKSVPDG- 199 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCCCTT-
T ss_pred ccCHHHhccCCCCCEEECCCCccCccCH-HHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCcCCccCHH-
Confidence 6532 5566777777777777666443 4456667777777777777654 244456667777777777776654443
Q ss_pred HHHHHHhCCcceeccCc
Q psy10233 178 RRMFINLCVNLRHLDDY 194 (207)
Q Consensus 178 ~~~~~~~~~~L~~L~~~ 194 (207)
.+..+++|+.|++.
T Consensus 200 ---~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 200 ---VFDRLTSLQYIWLH 213 (272)
T ss_dssp ---TTTTCTTCCEEECC
T ss_pred ---HHhCCcCCCEEEcc
Confidence 24566667666654
No 2
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=6.5e-20 Score=142.38 Aligned_cols=144 Identities=22% Similarity=0.302 Sum_probs=75.3
Q ss_pred CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc
Q psy10233 22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101 (207)
Q Consensus 22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~ 101 (207)
.+.+++++++++.++.+..+++|+.|++++|.+..++.+..+++|++|++++|.++.++.+..+++|++|++++|.++.+
T Consensus 43 L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~ 122 (308)
T 1h6u_A 43 ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122 (308)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC
T ss_pred cCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc
Confidence 34455555555555555666666666666666655544555566666666666555555555555555555555555555
Q ss_pred cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc
Q psy10233 102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV 171 (207)
Q Consensus 102 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~ 171 (207)
+.+..+++|+.|++++|.+++.+. +..+++|+.|++++|.+++. +. +..+++|+.|++++|.+.
T Consensus 123 ~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 123 TPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDL--TP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp GGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCC
T ss_pred hhhcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCC--hh-hcCCCCCCEEECCCCccC
Confidence 445555555555555555544322 33444444444444444432 11 334444444444444443
No 3
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.4e-19 Score=137.92 Aligned_cols=169 Identities=17% Similarity=0.263 Sum_probs=125.9
Q ss_pred CCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCcccccc--CCccccCCcEEecC
Q psy10233 21 LNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLS 94 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~ 94 (207)
..+.+++++|.++.++ .+.++++|+.|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 4556777777776543 57788888888888888887753 577888888888888886654 36778888888888
Q ss_pred CCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcccc
Q psy10233 95 HNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVG 172 (207)
Q Consensus 95 ~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~ 172 (207)
+|.++.++ .+..+++|+.|++++|.+++++. ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+.+
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRV-PEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcCcEe-ChhHhccCCCcCEEECCCCcCCc
Confidence 88887764 26677888888888888877544 4577788888888888888774 24556778888888888888774
Q ss_pred chhhHHHHHHHhCCcceeccCcc
Q psy10233 173 KIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 173 ~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
++.. .+..+++|+.|++..
T Consensus 196 -~~~~---~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 196 -VPEG---AFDSLEKLKMLQLQE 214 (270)
T ss_dssp -CCTT---TTTTCTTCCEEECCS
T ss_pred -CCHH---HhccccCCCEEEecC
Confidence 3332 256778888777653
No 4
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=3.9e-20 Score=142.57 Aligned_cols=163 Identities=23% Similarity=0.367 Sum_probs=138.5
Q ss_pred CCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc
Q psy10233 21 LNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK 100 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~ 100 (207)
..+.++++.++++.++.+..+++|+.|++++|.+..++.+..+++|++|++++|.++.++.+..+++|+.|++++|.++.
T Consensus 47 ~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~ 126 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD 126 (291)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC
T ss_pred cccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCC
Confidence 35668888888888888899999999999999998886688899999999999999888888899999999999999988
Q ss_pred ccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHH
Q psy10233 101 IENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180 (207)
Q Consensus 101 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 180 (207)
++.+..+++|+.|++++|.++++ ..+..+++|+.|++++|.+++. +. +..+++|+.|++++|.+.+ ++.
T Consensus 127 ~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~--~~-l~~l~~L~~L~L~~N~i~~-l~~---- 195 (291)
T 1h6t_A 127 INGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNHISD-LRA---- 195 (291)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCB-CGG----
T ss_pred ChhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccc--hh-hcCCCccCEEECCCCcCCC-Chh----
Confidence 87788889999999999998775 3577788999999999999875 23 7788999999999998874 553
Q ss_pred HHHhCCcceeccCcc
Q psy10233 181 FINLCVNLRHLDDYP 195 (207)
Q Consensus 181 ~~~~~~~L~~L~~~~ 195 (207)
+..+++|+.|++..
T Consensus 196 -l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 196 -LAGLKNLDVLELFS 209 (291)
T ss_dssp -GTTCTTCSEEEEEE
T ss_pred -hccCCCCCEEECcC
Confidence 56888888887753
No 5
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=1e-19 Score=141.27 Aligned_cols=164 Identities=18% Similarity=0.206 Sum_probs=142.8
Q ss_pred CCCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccc
Q psy10233 20 SLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIE 99 (207)
Q Consensus 20 ~~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~ 99 (207)
...+.++++.|.++.++.+.++++|+.|++++|.+..++.+..+++|++|++++|.++.++.+..+++|++|++++|.++
T Consensus 63 ~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT 142 (308)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred CCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccC
Confidence 34567899999998777799999999999999999998889999999999999999988888899999999999999998
Q ss_pred cccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHH
Q psy10233 100 KIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRR 179 (207)
Q Consensus 100 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 179 (207)
.++.+..+++|+.|++++|.+++++. +..+++|+.|++++|.+++. +. +..+++|+.|++++|.+.+. +.
T Consensus 143 ~~~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~N~l~~~-~~--- 212 (308)
T 1h6u_A 143 NISPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDI--SP-LASLPNLIEVHLKNNQISDV-SP--- 212 (308)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC--GG-GGGCTTCCEEECTTSCCCBC-GG---
T ss_pred cCccccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCccCcC--hh-hcCCCCCCEEEccCCccCcc-cc---
Confidence 88778888999999999999987543 78889999999999999874 32 67899999999999998854 33
Q ss_pred HHHHhCCcceeccCcc
Q psy10233 180 MFINLCVNLRHLDDYP 195 (207)
Q Consensus 180 ~~~~~~~~L~~L~~~~ 195 (207)
+..+++|+.|+++.
T Consensus 213 --l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 213 --LANTSNLFIVTLTN 226 (308)
T ss_dssp --GTTCTTCCEEEEEE
T ss_pred --ccCCCCCCEEEccC
Confidence 57889999888753
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.1e-19 Score=137.14 Aligned_cols=151 Identities=22% Similarity=0.322 Sum_probs=110.0
Q ss_pred CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCcccccc--CCccccCCcEEecC
Q psy10233 21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLS 94 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~ 94 (207)
..+.+++++|++..+ ..+.++++|+.|++++|.+...+. +..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 345577777777544 246777888888888888777643 677788888888888776554 35677888888888
Q ss_pred CCccccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcccc
Q psy10233 95 HNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVG 172 (207)
Q Consensus 95 ~~~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~ 172 (207)
+|.++.++. +..+++|+.|++++|.+++++. ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|++.+
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSV-PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCceeC
Confidence 888777643 5667888888888888877544 4577778888888888888764 34566777888888888888765
Q ss_pred c
Q psy10233 173 K 173 (207)
Q Consensus 173 ~ 173 (207)
.
T Consensus 194 ~ 194 (251)
T 3m19_A 194 S 194 (251)
T ss_dssp T
T ss_pred C
Confidence 4
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.2e-20 Score=147.72 Aligned_cols=168 Identities=14% Similarity=0.212 Sum_probs=94.2
Q ss_pred CCCeEEeecCCCcCc-cCccCCCCCCEEEeecCCccCccC-CccCCCCCEEEeecCcccccc-CCccccCCcEEecCCC-
Q psy10233 21 LNDVLYLHFKGYTVI-ENLEEYTGLKCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHN- 96 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~- 96 (207)
.+..+++++++++.+ +.+.++++|+.|++++|.+..+|. +..+++|++|++++|.++.++ .+..+++|++|++++|
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP 161 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEET
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCC
Confidence 445667777776543 346667777777777777766553 666677777777777665443 3555555666666554
Q ss_pred --------------------------------cccccc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCC
Q psy10233 97 --------------------------------FIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143 (207)
Q Consensus 97 --------------------------------~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n 143 (207)
.++.+| .+..+++|+.|++++|.+++++. .+..+++|+.|++++|
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~--~l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEELDLRGC 239 (328)
T ss_dssp TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG--GGGGCTTCCEEECTTC
T ss_pred CccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch--hhccCCCCCEEECcCC
Confidence 333332 23344455555555555544322 3445555555555555
Q ss_pred CCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 144 QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 144 ~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
.+.+. ++..++.+++|+.|++++|.+.+.+|.. +..+++|+.|+++.
T Consensus 240 ~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~----~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 240 TALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLD----IHRLTQLEKLDLRG 286 (328)
T ss_dssp TTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTT----GGGCTTCCEEECTT
T ss_pred cchhh-hHHHhcCCCCCCEEECCCCCchhhcchh----hhcCCCCCEEeCCC
Confidence 55443 3444555555666666655555555543 45566666666554
No 8
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=4.5e-19 Score=135.28 Aligned_cols=155 Identities=23% Similarity=0.310 Sum_probs=135.7
Q ss_pred CCCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCccccccC--CccccCCcEEecCC
Q psy10233 20 SLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSH 95 (207)
Q Consensus 20 ~~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~ 95 (207)
...+.+++++|.++.++.+.++++|++|++++|.+..++. +..+++|++|++++|.++..+. +..+++|++|++++
T Consensus 63 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 142 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142 (272)
T ss_dssp TTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC
Confidence 3456789999999888899999999999999999998854 7889999999999999976654 78899999999999
Q ss_pred CccccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccc
Q psy10233 96 NFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGK 173 (207)
Q Consensus 96 ~~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 173 (207)
|.++.++. +..+++|+.|++++|.+++++. ..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|++.+.
T Consensus 143 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccCccCHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCcc-CHHHHhCCcCCCEEEccCCCcccc
Confidence 99988753 6788999999999999988654 5678899999999999999985 456678999999999999999887
Q ss_pred hhh
Q psy10233 174 IKN 176 (207)
Q Consensus 174 ~~~ 176 (207)
.|.
T Consensus 221 ~~~ 223 (272)
T 3rfs_A 221 CPG 223 (272)
T ss_dssp TTT
T ss_pred CcH
Confidence 664
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=3.1e-19 Score=136.94 Aligned_cols=169 Identities=16% Similarity=0.242 Sum_probs=91.0
Q ss_pred CCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCc-c-CCccCCCCCEEEeecCc-cccc--cC------------
Q psy10233 21 LNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKI-E-NLDAQTEMRSIYMHHNL-VKVM--EN------------ 81 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~-~-~~~~l~~L~~L~l~~n~-~~~~--~~------------ 81 (207)
..+.++++++.++.++ .+.++++|+.|++++|.+..+ + .+..+++|++|++++|. +..+ ..
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 3445666666654432 355555666666666555544 1 24455555555555553 3322 12
Q ss_pred ------------CccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCC
Q psy10233 82 ------------LSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147 (207)
Q Consensus 82 ------------~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~ 147 (207)
+..+++|++|++++|.++.++ .+..+++|+.|++++|.+++++. ..+..+++|+.|++++|.+++
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH-HHhcCccccCEEECCCCcccc
Confidence 344455555555555554442 14445555555555555554332 335555666666666666655
Q ss_pred hhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 148 EEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 148 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
. .+..+..+++|+.|++++|.+.+..+. .+..+++|+.|+++.
T Consensus 192 ~-~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 192 V-HPHAFRDLGRLMTLYLFANNLSALPTE----ALAPLRALQYLRLND 234 (285)
T ss_dssp E-CTTTTTTCTTCCEEECCSSCCSCCCHH----HHTTCTTCCEEECCS
T ss_pred c-CHhHccCcccccEeeCCCCcCCcCCHH----HcccCcccCEEeccC
Confidence 3 255556666777777777766643333 356677777776653
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=8.1e-20 Score=143.05 Aligned_cols=167 Identities=11% Similarity=0.139 Sum_probs=125.7
Q ss_pred CCeEEeecCCCcCc-cCccCCCCCCEEEeecCCccCcc-CCcc---------------------------------CCCC
Q psy10233 22 NDVLYLHFKGYTVI-ENLEEYTGLKCLWLENNGISKIE-NLDA---------------------------------QTEM 66 (207)
Q Consensus 22 ~~~l~l~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~-~~~~---------------------------------l~~L 66 (207)
.+.++++.|.++.+ ..++++++|+.|++++|.+..+| .+.. +++|
T Consensus 106 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L 185 (328)
T 4fcg_A 106 LQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185 (328)
T ss_dssp CSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTC
T ss_pred CCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCC
Confidence 34566666665433 33555566666666666555443 2333 5566
Q ss_pred CEEEeecCcccccc-CCccccCCcEEecCCCcccccc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCC
Q psy10233 67 RSIYMHHNLVKVME-NLSHMQLLDTINLSHNFIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144 (207)
Q Consensus 67 ~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~ 144 (207)
++|++++|.++.++ .+..+++|++|++++|.+..+| .+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.
T Consensus 186 ~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp CEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCT
T ss_pred CEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCC
Confidence 66666666665443 4778899999999999998875 578889999999999987763 33578899999999999998
Q ss_pred CCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233 145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194 (207)
Q Consensus 145 l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~ 194 (207)
+.+. ++..+..+++|+.|++++|++.+.+|.. +..+++|+.+++.
T Consensus 265 ~~~~-~p~~~~~l~~L~~L~L~~n~~~~~iP~~----l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 265 NLLT-LPLDIHRLTQLEKLDLRGCVNLSRLPSL----IAQLPANCIILVP 309 (328)
T ss_dssp TCCB-CCTTGGGCTTCCEEECTTCTTCCCCCGG----GGGSCTTCEEECC
T ss_pred chhh-cchhhhcCCCCCEEeCCCCCchhhccHH----HhhccCceEEeCC
Confidence 8875 6777899999999999999999999986 7899999988765
No 11
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=4.4e-19 Score=136.60 Aligned_cols=168 Identities=20% Similarity=0.193 Sum_probs=115.4
Q ss_pred CCCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccC-CccccCCcEEecCCC
Q psy10233 20 SLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMEN-LSHMQLLDTINLSHN 96 (207)
Q Consensus 20 ~~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~~ 96 (207)
...+.+++++|.++.+ ..+.++++|+.|++++|.+..++....+++|++|++++|.++.++. +..+++|++|++++|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCC
Confidence 3456778888887644 3577788888888888887777665677778888888777765543 566777777777777
Q ss_pred cccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccch
Q psy10233 97 FIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKI 174 (207)
Q Consensus 97 ~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 174 (207)
.++.++ .+..+++|+.|++++|.+++++. ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+. .+
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~-~i 187 (290)
T 1p9a_G 111 RLTSLPLGALRGLGELQELYLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLY-TI 187 (290)
T ss_dssp CCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred cCcccCHHHHcCCCCCCEEECCCCCCCccCh-hhcccccCCCEEECCCCcCCcc-CHHHhcCcCCCCEEECCCCcCC-cc
Confidence 777663 36667777777777777776544 4566677777777777777764 2345566777777777777766 45
Q ss_pred hhHHHHHHHhCCcceeccCc
Q psy10233 175 KNYRRMFINLCVNLRHLDDY 194 (207)
Q Consensus 175 ~~~~~~~~~~~~~L~~L~~~ 194 (207)
|.. +..+.+|+.+++.
T Consensus 188 p~~----~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 188 PKG----FFGSHLLPFAFLH 203 (290)
T ss_dssp CTT----TTTTCCCSEEECC
T ss_pred Chh----hcccccCCeEEeC
Confidence 543 3345566666554
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=9.1e-19 Score=134.28 Aligned_cols=154 Identities=19% Similarity=0.297 Sum_probs=125.1
Q ss_pred CCCeEEeecCC-CcCc--cCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccccC--CccccCCcEEec
Q psy10233 21 LNDVLYLHFKG-YTVI--ENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINL 93 (207)
Q Consensus 21 ~~~~l~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l 93 (207)
..+.++++.|. ++.+ ..+.++++|+.|++++|.+...+ .+..+++|++|++++|.++.++. +..+++|++|++
T Consensus 81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence 34556677665 5433 45677788888888888877763 37788899999999998876643 788999999999
Q ss_pred CCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc
Q psy10233 94 SHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV 171 (207)
Q Consensus 94 ~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~ 171 (207)
++|.++.++ .+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|++.
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCC-CHHHHTTCTTCCEEECCSSCEE
T ss_pred CCCcccccCHHHhcCccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcC-CHHHcccCcccCEEeccCCCcc
Confidence 999998875 37888999999999999988644 6788899999999999999986 4677889999999999999998
Q ss_pred cchhh
Q psy10233 172 GKIKN 176 (207)
Q Consensus 172 ~~~~~ 176 (207)
++.+.
T Consensus 239 c~~~~ 243 (285)
T 1ozn_A 239 CDCRA 243 (285)
T ss_dssp CSGGG
T ss_pred CCCCc
Confidence 76553
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=7.6e-19 Score=133.85 Aligned_cols=179 Identities=19% Similarity=0.268 Sum_probs=147.8
Q ss_pred HhhhcCCccCCC-CCCeEEeecCCCcCccC-ccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccccC--C
Q psy10233 9 ICKDNKLYLTPS-LNDVLYLHFKGYTVIEN-LEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVMEN--L 82 (207)
Q Consensus 9 ~c~~~~~~~~~~-~~~~l~l~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~--~ 82 (207)
.|.|.+..|... ....++++.++++.++. +. ++++.|++++|.+..++ .+..+++|++|++++|.++.++. +
T Consensus 4 ~C~~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~ 81 (270)
T 2o6q_A 4 LCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81 (270)
T ss_dssp CBGGGTCSBEEETTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT
T ss_pred cCCCCCCCCEeCCCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh
Confidence 588887776443 34678999999876653 33 67999999999999885 48899999999999999976654 6
Q ss_pred ccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCC
Q psy10233 83 SHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPEL 160 (207)
Q Consensus 83 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L 160 (207)
..+++|++|++++|.+..++ .+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.++.. .+..+..+++|
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L 159 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP-RVFDSLTKLTYLSLGYNELQSL-PKGVFDKLTSL 159 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH-HHhCcCcCCCEEECCCCcCCcc-CHhHccCCccc
Confidence 78999999999999998875 46788999999999999988655 5688999999999999999975 35567889999
Q ss_pred cEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 161 RVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 161 ~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
+.|++++|.+.+..+. .+..+++|+.|+++.
T Consensus 160 ~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 160 KELRLYNNQLKRVPEG----AFDKLTELKTLKLDN 190 (270)
T ss_dssp CEEECCSSCCSCCCTT----TTTTCTTCCEEECCS
T ss_pred ceeEecCCcCcEeChh----HhccCCCcCEEECCC
Confidence 9999999998854443 267889999998864
No 14
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=2.5e-19 Score=150.48 Aligned_cols=163 Identities=23% Similarity=0.353 Sum_probs=137.7
Q ss_pred CCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc
Q psy10233 21 LNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK 100 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~ 100 (207)
.++.+.++.+.+..++.++.+++|+.|++++|.+..++.+..+++|+.|++++|.+..++.+..+++|+.|++++|.+..
T Consensus 44 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~ 123 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD 123 (605)
T ss_dssp TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC
T ss_pred CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC
Confidence 34567788888888888899999999999999998887788899999999999999888888889999999999999988
Q ss_pred ccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHH
Q psy10233 101 IENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRM 180 (207)
Q Consensus 101 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 180 (207)
++.+..+++|+.|++++|.++++ ..+..+++|+.|++++|.+.+.. + +..+++|+.|++++|.+.+ ++.
T Consensus 124 l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~i~~-l~~---- 192 (605)
T 1m9s_A 124 INGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIV-P--LAGLTKLQNLYLSKNHISD-LRA---- 192 (605)
T ss_dssp CGGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCG-G--GTTCTTCCEEECCSSCCCB-CGG----
T ss_pred CccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCch-h--hccCCCCCEEECcCCCCCC-ChH----
Confidence 87788889999999999988775 36778889999999999998752 3 7788999999999998874 443
Q ss_pred HHHhCCcceeccCcc
Q psy10233 181 FINLCVNLRHLDDYP 195 (207)
Q Consensus 181 ~~~~~~~L~~L~~~~ 195 (207)
+..+++|+.|++..
T Consensus 193 -l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 193 -LAGLKNLDVLELFS 206 (605)
T ss_dssp -GTTCTTCSEEECCS
T ss_pred -HccCCCCCEEEccC
Confidence 67888888888764
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.81 E-value=1.1e-18 Score=137.31 Aligned_cols=164 Identities=21% Similarity=0.251 Sum_probs=83.0
Q ss_pred CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCcc----------------------ccc
Q psy10233 22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLV----------------------KVM 79 (207)
Q Consensus 22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~----------------------~~~ 79 (207)
.+.++++.+.+..++.+..+++|+.|++++|.+..++.+..+++|+++++++|.+ +..
T Consensus 157 L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~ 236 (347)
T 4fmz_A 157 LNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL 236 (347)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred CcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCC
Confidence 3445555555555544556666666666666655554444444555555555444 443
Q ss_pred cCCccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCC
Q psy10233 80 ENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE 159 (207)
Q Consensus 80 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 159 (207)
+.+..+++|++|++++|.++.++.+..+++|+.|++++|.++++ ..+..+++|+.|++++|.+++. .+..+..+++
T Consensus 237 ~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~ 312 (347)
T 4fmz_A 237 SPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNE-DMEVIGGLTN 312 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGG-GHHHHHTCTT
T ss_pred cchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCc-ChhHhhcccc
Confidence 33444445555555555444444444445555555555554443 1244445555555555555543 3444455555
Q ss_pred CcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 160 LRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 160 L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
|+.|++++|++.+..| +..+++|+.|++.+
T Consensus 313 L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 313 LTTLFLSQNHITDIRP------LASLSKMDSADFAN 342 (347)
T ss_dssp CSEEECCSSSCCCCGG------GGGCTTCSEESSSC
T ss_pred CCEEEccCCccccccC------hhhhhccceeehhh
Confidence 5555555555543222 33455555555543
No 16
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=6.7e-19 Score=128.11 Aligned_cols=147 Identities=18% Similarity=0.299 Sum_probs=92.1
Q ss_pred cCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc--ccCCCCCCCCcEEEcC
Q psy10233 39 EEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK--IENLSCLPVLRTLHLS 116 (207)
Q Consensus 39 ~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~ 116 (207)
..+++|+.|++++|.+..++.+..+++|++|++++|.++.++.+..+++|++|++++|.++. .+.+..+++|+.|+++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 45566667777777666666666666777777777766666666666677777777766654 2446666677777777
Q ss_pred CCccCCccccccCCCCCCccEEEccCCC-CCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 117 HNRLKTIEDIEHLKDCPLLSIVDVSHNQ-IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 117 ~n~i~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
+|.+++... ..+..+++|+.|++++|. +++. + .+..+++|+.|++++|.+.+ ++. +..+++|+.|++..
T Consensus 121 ~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n~i~~-~~~-----l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 121 HSAHDDSIL-TKINTLPKVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFDGVHD-YRG-----IEDFPKLNQLYAFS 190 (197)
T ss_dssp SSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTBCCCC-CTT-----GGGCSSCCEEEECB
T ss_pred CCccCcHhH-HHHhhCCCCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCCCCcC-hHH-----hccCCCCCEEEeeC
Confidence 776655222 345666677777777776 5542 2 45566677777777776653 332 45666666666543
No 17
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=5.4e-20 Score=139.82 Aligned_cols=146 Identities=21% Similarity=0.306 Sum_probs=107.7
Q ss_pred CCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc
Q psy10233 21 LNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK 100 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~ 100 (207)
..+.++++.|+++.++.++.+++|+.|++++|.+..++.+..+++|++|++++|.++.++.+.. ++|+.|++++|.++.
T Consensus 42 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~ 120 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRD 120 (263)
T ss_dssp TCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSB
T ss_pred cCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCC
Confidence 4456777777777777777778888888888877777657777788888888887776666555 778888888887777
Q ss_pred ccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccc
Q psy10233 101 IENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGK 173 (207)
Q Consensus 101 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 173 (207)
++.+..+++|+.|++++|.+++++ .+..+++|+.|++++|.+++. ..+..+++|+.|++++|++.+.
T Consensus 121 ~~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 121 TDSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEECC
T ss_pred ChhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccCC
Confidence 777777778888888888776652 466677788888888877763 4566777788888888876643
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=2e-18 Score=130.16 Aligned_cols=180 Identities=15% Similarity=0.206 Sum_probs=146.4
Q ss_pred HHHhhhcCCccCCCCCCeEEeecCCCcCccC-ccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccccC--
Q psy10233 7 RKICKDNKLYLTPSLNDVLYLHFKGYTVIEN-LEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVMEN-- 81 (207)
Q Consensus 7 ~~~c~~~~~~~~~~~~~~l~l~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~-- 81 (207)
+..+.|.+..|... ...+++++++++.++. +. +.++.|++++|.+..++ .+..+++|++|++++|.++..+.
T Consensus 2 ~~Cp~~~gC~C~~~-~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 78 (251)
T 3m19_A 2 KTCETVTGCTCNEG-KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78 (251)
T ss_dssp --CHHHHSSEEEGG-GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred ccCCCCCceEcCCC-CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH
Confidence 44566767777543 3467888888876553 33 68999999999999874 48899999999999999976643
Q ss_pred CccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCC
Q psy10233 82 LSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE 159 (207)
Q Consensus 82 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 159 (207)
+..+++|++|++++|.++.++ .+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.++.. .+..++.+++
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~ 156 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTN 156 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTT
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcCCcCCcc-CHHHcCcCcC
Confidence 788999999999999998875 46788999999999999988655 5678899999999999999975 3557889999
Q ss_pred CcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 160 LRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 160 L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
|+.|++++|.+.+..+. .+..+++|+.|++..
T Consensus 157 L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHG----AFDRLGKLQTITLFG 188 (251)
T ss_dssp CCEEECCSSCCSCCCTT----TTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHH----HHhCCCCCCEEEeeC
Confidence 99999999999865544 367889999988764
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=1.2e-19 Score=141.17 Aligned_cols=164 Identities=20% Similarity=0.306 Sum_probs=114.0
Q ss_pred Hhh--hcCCccCC----CCCCeEEeecCCCc----CccCccCCCCCCEEEeec-CCccC-cc-CCccCCCCCEEEeecCc
Q psy10233 9 ICK--DNKLYLTP----SLNDVLYLHFKGYT----VIENLEEYTGLKCLWLEN-NGISK-IE-NLDAQTEMRSIYMHHNL 75 (207)
Q Consensus 9 ~c~--~~~~~~~~----~~~~~l~l~~~~~~----~~~~l~~l~~L~~L~l~~-~~l~~-~~-~~~~l~~L~~L~l~~n~ 75 (207)
.|. |.|+.|+. ..+..++++++++. .++.++++++|+.|++++ |.+.. .| .+..+++|++|++++|.
T Consensus 33 ~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 112 (313)
T 1ogq_A 33 CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112 (313)
T ss_dssp TTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC
T ss_pred CCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe
Confidence 577 99999976 35667889999885 356789999999999995 87774 34 48888999999999998
Q ss_pred cc-cc-cCCccccCCcEEecCCCcccc-cc-CCCCCCCCcEEEcCCCccCCccccccCCCCC-CccEEEccCCCCCChhh
Q psy10233 76 VK-VM-ENLSHMQLLDTINLSHNFIEK-IE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCP-LLSIVDVSHNQIEDEEV 150 (207)
Q Consensus 76 ~~-~~-~~~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~-~L~~L~l~~n~l~~~~~ 150 (207)
++ .+ ..+..+++|++|++++|.+.. +| .+..+++|+.|++++|.+++..+ ..+..++ .|+.|++++|.+++. .
T Consensus 113 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~~L~~L~L~~N~l~~~-~ 190 (313)
T 1ogq_A 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNRLTGK-I 190 (313)
T ss_dssp CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSSEEEEE-C
T ss_pred eCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC-HHHhhhhhcCcEEECcCCeeecc-C
Confidence 86 33 347788888999998888874 34 46777888888888888764222 3455555 677777777766532 3
Q ss_pred HHHhccCCCCcEEEcCCCccccchh
Q psy10233 151 IEVFGAMPELRVLTLSHNPCVGKIK 175 (207)
Q Consensus 151 ~~~~~~~~~L~~l~l~~n~~~~~~~ 175 (207)
+..+..++ |+.|++++|.+.+..|
T Consensus 191 ~~~~~~l~-L~~L~Ls~N~l~~~~~ 214 (313)
T 1ogq_A 191 PPTFANLN-LAFVDLSRNMLEGDAS 214 (313)
T ss_dssp CGGGGGCC-CSEEECCSSEEEECCG
T ss_pred ChHHhCCc-ccEEECcCCcccCcCC
Confidence 33444443 5555555554443333
No 20
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=3.4e-19 Score=135.41 Aligned_cols=158 Identities=18% Similarity=0.308 Sum_probs=138.3
Q ss_pred EEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccCC
Q psy10233 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENL 104 (207)
Q Consensus 25 l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 104 (207)
+.++.++++.++.+..+++|+.|++++|.+..++.+..+++|++|++++|.++.++.+..+++|++|++++|.++.++.+
T Consensus 24 l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~ 103 (263)
T 1xeu_A 24 QNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGI 103 (263)
T ss_dssp HHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTC
T ss_pred HHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcc
Confidence 45677788777788899999999999999999998999999999999999998887789999999999999999988776
Q ss_pred CCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHh
Q psy10233 105 SCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINL 184 (207)
Q Consensus 105 ~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~ 184 (207)
.. ++|+.|++++|.+++. ..+..+++|+.|++++|.+++. + .+..+++|+.|++++|.+.+. + .+..
T Consensus 104 ~~-~~L~~L~L~~N~l~~~---~~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~i~~~-~-----~l~~ 170 (263)
T 1xeu_A 104 PS-ACLSRLFLDNNELRDT---DSLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNEITNT-G-----GLTR 170 (263)
T ss_dssp CC-SSCCEEECCSSCCSBS---GGGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSCCCBC-T-----TSTT
T ss_pred cc-CcccEEEccCCccCCC---hhhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCcCcch-H-----Hhcc
Confidence 66 9999999999999875 3588899999999999999984 3 578899999999999999864 2 2678
Q ss_pred CCcceeccCcc
Q psy10233 185 CVNLRHLDDYP 195 (207)
Q Consensus 185 ~~~L~~L~~~~ 195 (207)
+++|+.|+++.
T Consensus 171 l~~L~~L~l~~ 181 (263)
T 1xeu_A 171 LKKVNWIDLTG 181 (263)
T ss_dssp CCCCCEEEEEE
T ss_pred CCCCCEEeCCC
Confidence 89999888753
No 21
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=7.2e-20 Score=141.06 Aligned_cols=147 Identities=27% Similarity=0.393 Sum_probs=132.6
Q ss_pred CCCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccc
Q psy10233 20 SLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIE 99 (207)
Q Consensus 20 ~~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~ 99 (207)
...+.++++.|.++.++.+.++++|+.|++++|.+..++.+..+++|++|++++|.++.++.+..+++|+.|++++|.++
T Consensus 68 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCC
Confidence 34567899999998777799999999999999999999889999999999999999998888999999999999999999
Q ss_pred cccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcccc
Q psy10233 100 KIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVG 172 (207)
Q Consensus 100 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~ 172 (207)
.++.+..+++|+.|++++|.+++.+. +..+++|+.|++++|.+++. + .+..+++|+.|++++|++.+
T Consensus 148 ~~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l--~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 148 DITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cchhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCC--h-hhccCCCCCEEECcCCcccC
Confidence 88888899999999999999988543 78889999999999999984 3 37889999999999999864
No 22
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.80 E-value=2.5e-19 Score=128.08 Aligned_cols=146 Identities=25% Similarity=0.319 Sum_probs=98.8
Q ss_pred CccCCCCCEEEeecCccccccCCcccc-CCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEE
Q psy10233 60 LDAQTEMRSIYMHHNLVKVMENLSHMQ-LLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV 138 (207)
Q Consensus 60 ~~~l~~L~~L~l~~n~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L 138 (207)
+...++|++|++++|.++.++.+..+. +|+.|++++|.++.++.+..+++|+.|++++|.+++++. ..+..+++|+.|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGE-GLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECS-CHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCc-chhhcCCCCCEE
Confidence 444555666666666665555444443 666677777666666566666777777777777766433 334667778888
Q ss_pred EccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcccCHHhhhhhhhC
Q psy10233 139 DVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEAW 207 (207)
Q Consensus 139 ~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~ 207 (207)
++++|.+.+.+....+..+++|+.|++++|++. .+|..+...+..+++|+.||++.+...++..++.|
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~~~~~~ 161 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKM 161 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHHHHHHHHT
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHHHHHHHHH
Confidence 888888876422236677888888888888876 56665555678888888888888877777666654
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1.6e-18 Score=141.08 Aligned_cols=147 Identities=20% Similarity=0.264 Sum_probs=74.1
Q ss_pred CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccccC--CccccCCcEEecC
Q psy10233 21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLS 94 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~ 94 (207)
..+.+++++|+++.+ ..+.++++|+.|++++|.+..++ .+..+++|++|++++|.++.++. +..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 455677777776543 34566666666666666665542 25555555555555555543321 4444455555554
Q ss_pred CCcccccc---------------------------CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCC
Q psy10233 95 HNFIEKIE---------------------------NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147 (207)
Q Consensus 95 ~~~~~~~~---------------------------~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~ 147 (207)
+|.+..++ .+..+++|+.|++++|.+++++ .+..+++|+.|++++|.+++
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP---NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC---CCTTCTTCCEEECTTSCCSE
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc---cccccccccEEECcCCcCcc
Confidence 44443221 1333445555555555554432 23444455555555555544
Q ss_pred hhhHHHhccCCCCcEEEcCCCccc
Q psy10233 148 EEVIEVFGAMPELRVLTLSHNPCV 171 (207)
Q Consensus 148 ~~~~~~~~~~~~L~~l~l~~n~~~ 171 (207)
. .+..+..+++|+.|++++|.+.
T Consensus 233 ~-~~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 233 I-RPGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp E-CGGGGTTCTTCCEEECTTSCCC
T ss_pred c-CcccccCccCCCEEEeCCCcCc
Confidence 3 2334444444444444444444
No 24
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.5e-18 Score=140.93 Aligned_cols=168 Identities=20% Similarity=0.230 Sum_probs=106.9
Q ss_pred CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCcccccc----------------
Q psy10233 21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVME---------------- 80 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~---------------- 80 (207)
..+.++++.|.++.+ ..+.++++|+.|++++|.+..++. +..+++|++|++++|.++.++
T Consensus 89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~ 168 (440)
T 3zyj_A 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168 (440)
T ss_dssp SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence 344566666666533 345666666666666666666532 556666666666666553322
Q ss_pred -----------CCccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChh
Q psy10233 81 -----------NLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149 (207)
Q Consensus 81 -----------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 149 (207)
.+..+++|++|++++|.++.+|.+..+++|+.|++++|.++++.. ..+..+++|+.|++++|.++..
T Consensus 169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~- 246 (440)
T 3zyj_A 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQVI- 246 (440)
T ss_dssp CCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEE-
T ss_pred CCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccCh-hhhccCccCCEEECCCCceeEE-
Confidence 244566666666666666666666667777777777777766433 5667777777777777777764
Q ss_pred hHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233 150 VIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194 (207)
Q Consensus 150 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~ 194 (207)
.+..+..+++|+.|++++|.+.+..+. .+..+++|+.|++.
T Consensus 247 ~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 247 ERNAFDNLQSLVEINLAHNNLTLLPHD----LFTPLHHLERIHLH 287 (440)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCCCTT----TTSSCTTCCEEECC
T ss_pred ChhhhcCCCCCCEEECCCCCCCccChh----HhccccCCCEEEcC
Confidence 355666777777888887777643333 25567777777664
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=2.2e-18 Score=140.36 Aligned_cols=170 Identities=20% Similarity=0.214 Sum_probs=137.2
Q ss_pred CCCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCcccccc---------------
Q psy10233 20 SLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVME--------------- 80 (207)
Q Consensus 20 ~~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~--------------- 80 (207)
...+.++++.|.++.+ ..+.++++|+.|++++|.+..++. +..+++|++|++++|.++.++
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 178 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeC
Confidence 3456788999988654 468889999999999999988753 788999999999998775332
Q ss_pred ------------CCccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCCh
Q psy10233 81 ------------NLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDE 148 (207)
Q Consensus 81 ------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 148 (207)
.+..+++|++|++++|.+..+|.+..+++|+.|++++|.++++.+ ..+..+++|+.|++++|.++..
T Consensus 179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRP-GSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp CCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECG-GGGTTCTTCCEEECTTSCCCEE
T ss_pred CCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCc-ccccCccCCCEEEeCCCcCceE
Confidence 144567788888888888888888888999999999999988644 6788899999999999999875
Q ss_pred hhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 149 EVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 149 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
.+..+..+++|+.|++++|.+.+..+. .+..+++|+.|++..
T Consensus 258 -~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 258 -ERNAFDGLASLVELNLAHNNLSSLPHD----LFTPLRYLVELHLHH 299 (452)
T ss_dssp -CTTTTTTCTTCCEEECCSSCCSCCCTT----SSTTCTTCCEEECCS
T ss_pred -CHHHhcCCCCCCEEECCCCcCCccChH----HhccccCCCEEEccC
Confidence 467788899999999999998744333 356788899888764
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=7.8e-18 Score=132.39 Aligned_cols=166 Identities=22% Similarity=0.289 Sum_probs=120.3
Q ss_pred CCCeEEeecC-CCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccc--------------
Q psy10233 21 LNDVLYLHFK-GYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHM-------------- 85 (207)
Q Consensus 21 ~~~~l~l~~~-~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-------------- 85 (207)
..+.+++++| ....++.+..+++|+.|++++|.+...+.+..+++|++|++++|.+..++.+..+
T Consensus 133 ~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 133 KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCC
Confidence 4556788888 4466777899999999999999999887789999999999999988766544444
Q ss_pred --------cCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccC
Q psy10233 86 --------QLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157 (207)
Q Consensus 86 --------~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 157 (207)
++|++|++++|.+..++.+..+++|+.|++++|.++++ ..+..+++|+.|++++|.+++. ..+..+
T Consensus 213 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~---~~~~~l 286 (347)
T 4fmz_A 213 DITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISDI---SVLNNL 286 (347)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCC---GGGGGC
T ss_pred CCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCCC---hhhcCC
Confidence 45555555555555554455566666666666666553 2466677788888888877763 345677
Q ss_pred CCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCccc
Q psy10233 158 PELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPV 196 (207)
Q Consensus 158 ~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~ 196 (207)
++|+.|++++|.+.+..+. .+..+++|+.|+++..
T Consensus 287 ~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDME----VIGGLTNLTTLFLSQN 321 (347)
T ss_dssp TTCSEEECCSSCCCGGGHH----HHHTCTTCSEEECCSS
T ss_pred CCCCEEECcCCcCCCcChh----HhhccccCCEEEccCC
Confidence 8888888888887765554 3667888888877654
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=3.6e-19 Score=137.86 Aligned_cols=170 Identities=21% Similarity=0.198 Sum_probs=100.9
Q ss_pred CCCeEEeecCCCcCccC--ccCCCCCCEEEeecCCccCc----cCCccCCCCCEEEeecCcccccc--------------
Q psy10233 21 LNDVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKI----ENLDAQTEMRSIYMHHNLVKVME-------------- 80 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~~~--l~~l~~L~~L~l~~~~l~~~----~~~~~l~~L~~L~l~~n~~~~~~-------------- 80 (207)
..+.+++++|+++.++. +.++++|+.|++++|.+... ..+..+++|++|++++|.+..++
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence 45668888888865543 67788888888888877643 12333455555555555443322
Q ss_pred ------------CCccccCCcEEecCCCccccc-c-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCC
Q psy10233 81 ------------NLSHMQLLDTINLSHNFIEKI-E-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE 146 (207)
Q Consensus 81 ------------~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~ 146 (207)
.+..+++|++|++++|.+... + .+..+++|+.|++++|.+++...+..+..+++|+.|++++|.++
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence 244455555555555555433 1 24455666666666666554222245666677777777777776
Q ss_pred ChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 147 DEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 147 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
+. .+..+..+++|+.|++++|.+.+..+.. +..+++|+.|++++
T Consensus 189 ~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 189 QL-SPTAFNSLSSLQVLNMSHNNFFSLDTFP----YKCLNSLQVLDYSL 232 (306)
T ss_dssp EE-CTTTTTTCTTCCEEECTTSCCSBCCSGG----GTTCTTCCEEECTT
T ss_pred Cc-CHHHhcCCCCCCEEECCCCccCccChhh----ccCcccCCEeECCC
Confidence 54 2556666777777777777766433322 45667777777654
No 28
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=9.2e-19 Score=127.39 Aligned_cols=146 Identities=19% Similarity=0.242 Sum_probs=125.7
Q ss_pred CCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCcccc--ccCCccccCCcEEecCCCcc
Q psy10233 21 LNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKV--MENLSHMQLLDTINLSHNFI 98 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~L~~L~l~~~~~ 98 (207)
..+.+++++++++.++.+..+++|+.|++++|.+..++.+..+++|++|++++|.++. +..+..+++|++|++++|.+
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence 4567899999998878899999999999999988888888999999999999999975 56789999999999999999
Q ss_pred ccc--cCCCCCCCCcEEEcCCCc-cCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcccc
Q psy10233 99 EKI--ENLSCLPVLRTLHLSHNR-LKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVG 172 (207)
Q Consensus 99 ~~~--~~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~ 172 (207)
... +.+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.+++. + .+..+++|+.|++++|++.+
T Consensus 125 ~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~--~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 125 DDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDY--R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp BGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCC--T-TGGGCSSCCEEEECBC----
T ss_pred CcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcCh--H-HhccCCCCCEEEeeCcccCC
Confidence 863 458889999999999997 77653 578889999999999999984 3 67789999999999999753
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=136.86 Aligned_cols=169 Identities=17% Similarity=0.269 Sum_probs=137.0
Q ss_pred CCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccccC--CccccCCcEEecC
Q psy10233 21 LNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLS 94 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~ 94 (207)
..+.+++++|+++.++ .+.++++|+.|++++|.+...+ .+..+++|++|++++|.++.++. +..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 5567888888887654 5889999999999999988873 38889999999999999876653 7788999999999
Q ss_pred CCccccccC---CCCCCCCcEEEcCCC-ccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcc
Q psy10233 95 HNFIEKIEN---LSCLPVLRTLHLSHN-RLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPC 170 (207)
Q Consensus 95 ~~~~~~~~~---~~~~~~L~~L~l~~n-~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~ 170 (207)
+|.++.++. +..+++|+.|++++| .++.++. ..+..+++|+.|++++|.+++. .+..++.+++|+.|++++|.+
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQSY-EPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEE-CTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCH-HHccCCCCCCEEECCCCCcCcc-CHHHHhccccCCeecCCCCcc
Confidence 999888754 677899999999998 4655433 5788889999999999998875 467788899999999999987
Q ss_pred ccchhhHHHHHHHhCCcceeccCcc
Q psy10233 171 VGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 171 ~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
. .++.. ....+++|+.|+++.
T Consensus 211 ~-~~~~~---~~~~~~~L~~L~L~~ 231 (353)
T 2z80_A 211 I-LLLEI---FVDVTSSVECLELRD 231 (353)
T ss_dssp T-THHHH---HHHHTTTEEEEEEES
T ss_pred c-cchhh---hhhhcccccEEECCC
Confidence 5 55543 466788888888764
No 30
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=3.4e-18 Score=130.54 Aligned_cols=180 Identities=18% Similarity=0.268 Sum_probs=132.6
Q ss_pred hhhcCCccCC----CCCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc-
Q psy10233 10 CKDNKLYLTP----SLNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME- 80 (207)
Q Consensus 10 c~~~~~~~~~----~~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~- 80 (207)
|...+....| ...+.+++++|+++.++ .+.++++|+.|++++|.+..++ .+..+++|++|++++|.++..+
T Consensus 14 c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp CTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred ecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 4444444333 34667899999987553 6888999999999999998874 4888999999999999887654
Q ss_pred -CCccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhc--
Q psy10233 81 -NLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG-- 155 (207)
Q Consensus 81 -~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-- 155 (207)
.+..+++|++|++++|.+..++ .+..+++|+.|++++|.+++...+..+..+++|++|++++|.+++.. +..+.
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l 172 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVL 172 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHHH
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC-HHHhhhh
Confidence 4788999999999999888774 47788999999999999887544457888889999999999887632 22222
Q ss_pred -cC------------------------CCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233 156 -AM------------------------PELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194 (207)
Q Consensus 156 -~~------------------------~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~ 194 (207)
.+ .+|+.|++++|.+.+ +|.. .+..+++|+.|+++
T Consensus 173 ~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~---~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDG---IFDRLTSLQKIWLH 232 (276)
T ss_dssp HTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSC-CCTT---TTTTCCSCCEEECC
T ss_pred hhccccceeeecCCCcccccCccccCCCcccEEECCCCceee-cCHh---HhcccccccEEEcc
Confidence 22 256667777776653 3322 24667777777765
No 31
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=1.1e-17 Score=123.82 Aligned_cols=150 Identities=20% Similarity=0.253 Sum_probs=127.4
Q ss_pred CeEEeecCCCcCccCccCCCCCCEEEeecCCccCcc-C--CccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCc
Q psy10233 23 DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIE-N--LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNF 97 (207)
Q Consensus 23 ~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-~--~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~ 97 (207)
..++++.++++.++. .-...++.|++++|.+..++ . +..+++|++|++++|.++.++ .+..+++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 467888888876553 11345789999999999873 2 789999999999999998764 48899999999999999
Q ss_pred ccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh
Q psy10233 98 IEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK 175 (207)
Q Consensus 98 ~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 175 (207)
++.++ .+..+++|+.|++++|.++++.+ ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|++.+..+
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTV-APGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCB-CTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEE-CHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 98874 37889999999999999988654 6788999999999999999985 37788899999999999999987665
No 32
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=1.6e-17 Score=123.63 Aligned_cols=169 Identities=17% Similarity=0.244 Sum_probs=134.8
Q ss_pred CeEEeecCCCcCccCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccccC--CccccCCcEEecCCCcc
Q psy10233 23 DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFI 98 (207)
Q Consensus 23 ~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~~~~ 98 (207)
..++++.++++.++. .-.++|+.|++++|.+..++ .+..+++|++|++++|.++.++. +..+++|+.|++++|.+
T Consensus 22 ~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 22 TTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 346677777765543 22388999999999999873 38899999999999999977653 78899999999999999
Q ss_pred ccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh-
Q psy10233 99 EKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK- 175 (207)
Q Consensus 99 ~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~- 175 (207)
+.++. +..+++|+.|++++|.++.++. .+..+++|+.|++++|.++.. .+..+..+++|+.|++++|++.+..+
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTELPR--GIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCSCCT--TGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred CccChhHhCcchhhCeEeccCCcccccCc--ccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 98853 6789999999999999987654 678889999999999999975 34678889999999999999987654
Q ss_pred --hHHHHHHHhCCcceeccCcc
Q psy10233 176 --NYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 176 --~~~~~~~~~~~~L~~L~~~~ 195 (207)
.....+......+..++...
T Consensus 178 ~~~l~~~~~~~~~~~~~~~g~~ 199 (229)
T 3e6j_A 178 IMYLRNWVADHTSIAMRWDGKA 199 (229)
T ss_dssp GHHHHHHHHHCGGGEEEESSSE
T ss_pred hHHHHHHHHhCccccccccCcc
Confidence 22333455556666666543
No 33
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=1.9e-18 Score=129.34 Aligned_cols=170 Identities=12% Similarity=0.161 Sum_probs=126.6
Q ss_pred CCCCCeEEeecCCCcCcc--CccCCCCCCEEEeecCC-ccCcc--CCccCCCCCEEEeec-Ccccccc--CCccccCCcE
Q psy10233 19 PSLNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNG-ISKIE--NLDAQTEMRSIYMHH-NLVKVME--NLSHMQLLDT 90 (207)
Q Consensus 19 ~~~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~-l~~~~--~~~~l~~L~~L~l~~-n~~~~~~--~~~~~~~L~~ 90 (207)
+...+.+++++|+++.++ .+.++++|+.|++++|. +..++ .+..+++|++|++++ |.++.++ .+..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 345677889999887654 47889999999999996 87774 477889999999998 8887664 3678888999
Q ss_pred EecCCCccccccCCCCCCCCc---EEEcCCC-ccCCccccccCCCCCCcc-EEEccCCCCCChhhHHHhccCCCCcEEEc
Q psy10233 91 INLSHNFIEKIENLSCLPVLR---TLHLSHN-RLKTIEDIEHLKDCPLLS-IVDVSHNQIEDEEVIEVFGAMPELRVLTL 165 (207)
Q Consensus 91 L~l~~~~~~~~~~~~~~~~L~---~L~l~~n-~i~~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~~L~~l~l 165 (207)
|++++|.++.+|.+..+++|+ .|++++| .++.++. ..+..+++|+ .+++++|.++..+ ...+.. ++|+.|++
T Consensus 110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~~i~-~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFTSVQ-GYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCCEEC-TTTTTT-CEEEEEEC
T ss_pred EeCCCCCCccccccccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCcccC-HhhcCC-CCCCEEEc
Confidence 999988888877777777777 8888888 7777544 5577788888 8888888887532 233333 67888888
Q ss_pred CCCc-cccchhhHHHHHHHhC-CcceeccCcc
Q psy10233 166 SHNP-CVGKIKNYRRMFINLC-VNLRHLDDYP 195 (207)
Q Consensus 166 ~~n~-~~~~~~~~~~~~~~~~-~~L~~L~~~~ 195 (207)
++|+ +. .++.. .+..+ ++|+.|+++.
T Consensus 187 ~~n~~l~-~i~~~---~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 187 NKNKYLT-VIDKD---AFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp TTCTTCC-EECTT---TTTTCSBCCSEEECTT
T ss_pred CCCCCcc-cCCHH---HhhccccCCcEEECCC
Confidence 8885 65 34332 25566 7788777654
No 34
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=1.2e-17 Score=123.58 Aligned_cols=149 Identities=19% Similarity=0.337 Sum_probs=127.4
Q ss_pred CeEEeecCCCcCccC-ccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccc--cCCccccCCcEEecCCCc
Q psy10233 23 DVLYLHFKGYTVIEN-LEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINLSHNF 97 (207)
Q Consensus 23 ~~l~l~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~~~ 97 (207)
..+++++++++.++. +. ++++.|++++|.+..++ .+..+++|++|++++|.++.+ ..|..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 467888888876553 33 68999999999999875 488999999999999999766 458899999999999999
Q ss_pred cccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh
Q psy10233 98 IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK 175 (207)
Q Consensus 98 ~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 175 (207)
++.++. +..+++|+.|++++|.++.++. ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|++.++..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEE-CHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 998854 6788999999999999988654 6788999999999999999986 35678889999999999999876544
No 35
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=2.2e-17 Score=127.10 Aligned_cols=152 Identities=18% Similarity=0.150 Sum_probs=132.5
Q ss_pred CCCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccC-CccCCCCCEEEeecCcccccc--CCccccCCcEEecCCC
Q psy10233 20 SLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHN 96 (207)
Q Consensus 20 ~~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~ 96 (207)
...+.++++.|.++.++..+.+++|+.|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|++++|
T Consensus 55 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp TTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred CCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 4556789999999887777899999999999999998875 788999999999999998764 3889999999999999
Q ss_pred ccccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccch
Q psy10233 97 FIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKI 174 (207)
Q Consensus 97 ~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 174 (207)
.++.++. +..+++|+.|++++|.++.++. ..+..+++|+.|++++|.++. ++..+...+.|+.+++++|++.+..
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCCccChhhcccccCCCEEECCCCcCCccCH-HHhcCcCCCCEEECCCCcCCc--cChhhcccccCCeEEeCCCCccCcC
Confidence 9988753 6788999999999999998655 667889999999999999997 5666677889999999999987543
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=3.1e-18 Score=132.59 Aligned_cols=168 Identities=17% Similarity=0.229 Sum_probs=135.4
Q ss_pred CCeEEeecCCCcCc-cCccCCCCCCEEEeecCCccCcc---CCccCCCCCEEEeecCccccc--cCCccccCCcEEecCC
Q psy10233 22 NDVLYLHFKGYTVI-ENLEEYTGLKCLWLENNGISKIE---NLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINLSH 95 (207)
Q Consensus 22 ~~~l~l~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~---~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~ 95 (207)
.+.+++++|.+..+ ..+.++++|+.|++++|.+...+ .+..+++|++|++++|.+... ..+..+++|++|++++
T Consensus 80 L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp CCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred cCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 44566666666433 34778889999999999888764 478889999999999988644 3478899999999999
Q ss_pred Ccccc--cc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcccc
Q psy10233 96 NFIEK--IE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVG 172 (207)
Q Consensus 96 ~~~~~--~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~ 172 (207)
|.+.. .| .+..+++|+.|++++|.+++.++ ..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+.+
T Consensus 160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCSBC-CSGGGTTCTTCCEEECTTSCCCB
T ss_pred CccccccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCccCcc-ChhhccCcccCCEeECCCCCCcc
Confidence 99875 34 57888999999999999988644 5788899999999999999875 34567889999999999999987
Q ss_pred chhhHHHHHHHhC-CcceeccCcc
Q psy10233 173 KIKNYRRMFINLC-VNLRHLDDYP 195 (207)
Q Consensus 173 ~~~~~~~~~~~~~-~~L~~L~~~~ 195 (207)
..+.. +..+ ++|+.|+++.
T Consensus 238 ~~~~~----~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 238 SKKQE----LQHFPSSLAFLNLTQ 257 (306)
T ss_dssp CSSSS----CCCCCTTCCEEECTT
T ss_pred cCHHH----HHhhhccCCEEEccC
Confidence 77654 5566 4899888864
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=9.4e-18 Score=136.16 Aligned_cols=168 Identities=20% Similarity=0.260 Sum_probs=111.6
Q ss_pred CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc--CCccccCCcEEecC
Q psy10233 21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLS 94 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~ 94 (207)
..+.++++.|.++.+ ..+.++++|+.|++++|.+..++ .|..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 456789999998755 57889999999999999998874 4888999999999999997765 37889999999999
Q ss_pred CCcccccc--CCCCCCCCcEEEcCCCc-cCCccccccCCCCC----------------------CccEEEccCCCCCChh
Q psy10233 95 HNFIEKIE--NLSCLPVLRTLHLSHNR-LKTIEDIEHLKDCP----------------------LLSIVDVSHNQIEDEE 149 (207)
Q Consensus 95 ~~~~~~~~--~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~~~----------------------~L~~L~l~~n~l~~~~ 149 (207)
+|.+..++ .+..+++|+.|++++|. +..++. ..+..++ +|+.|++++|.+++.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~- 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI- 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE-
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc-
Confidence 99887663 25555666666665532 222221 2344444 455555555555443
Q ss_pred hHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233 150 VIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194 (207)
Q Consensus 150 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~ 194 (207)
.+..+..+++|+.|++++|.+.+..+.. +..+++|+.|+++
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNA----FDNLQSLVEINLA 263 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTS----STTCTTCCEEECT
T ss_pred ChhhhccCccCCEEECCCCceeEEChhh----hcCCCCCCEEECC
Confidence 2444455555555555555554333322 4455666666654
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.76 E-value=1.4e-17 Score=136.05 Aligned_cols=158 Identities=22% Similarity=0.260 Sum_probs=77.7
Q ss_pred EEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccCC
Q psy10233 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENL 104 (207)
Q Consensus 25 l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 104 (207)
+++++|.++.++.+..+++|+.|++++|.+...+.+..+++|++|++++|.+...+.+..+++|+.|++++|.+..++.+
T Consensus 226 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (466)
T 1o6v_A 226 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 305 (466)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGG
T ss_pred EECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhh
Confidence 33444444333344444444444444444444433444444444455444444443344445555555555555444434
Q ss_pred CCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHh
Q psy10233 105 SCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINL 184 (207)
Q Consensus 105 ~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~ 184 (207)
..+++|+.|++++|.+++.++ +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..| +..
T Consensus 306 ~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~------~~~ 373 (466)
T 1o6v_A 306 SNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLTP------LAN 373 (466)
T ss_dssp GGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBCGG------GTT
T ss_pred cCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCccch------hhc
Confidence 445555555555555544322 34455555666666655542 234555666666666666554443 345
Q ss_pred CCcceeccCc
Q psy10233 185 CVNLRHLDDY 194 (207)
Q Consensus 185 ~~~L~~L~~~ 194 (207)
+++|+.|++.
T Consensus 374 l~~L~~L~l~ 383 (466)
T 1o6v_A 374 LTRITQLGLN 383 (466)
T ss_dssp CTTCCEEECC
T ss_pred CCCCCEEecc
Confidence 5666655544
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.76 E-value=8.9e-18 Score=137.48 Aligned_cols=170 Identities=17% Similarity=0.189 Sum_probs=139.0
Q ss_pred CCCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCc-c-CCccCCCCCEEEeecCccccccC--CccccCCcEEec
Q psy10233 20 SLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKI-E-NLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINL 93 (207)
Q Consensus 20 ~~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~-~-~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l 93 (207)
...+.++++.|.++.+ ..+.++++|++|++++|.+..+ + .+..+++|++|++++|.++.++. +..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 3567789999998755 4688999999999999999887 3 48899999999999999877653 788999999999
Q ss_pred CCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc
Q psy10233 94 SHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV 171 (207)
Q Consensus 94 ~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~ 171 (207)
++|.+..++ .+..+++|+.|++++|.++.+.. ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCcCc
Confidence 999988762 47788999999999999887544 5788899999999999999875 3567788999999999999887
Q ss_pred cchhhHHHHHHHhCCcceeccCcc
Q psy10233 172 GKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 172 ~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
+..+. .+..+++|+.|+++.
T Consensus 190 ~~~~~----~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 190 AIRDY----SFKRLYRLKVLEISH 209 (477)
T ss_dssp EECTT----CSCSCTTCCEEEEEC
T ss_pred EeChh----hcccCcccceeeCCC
Confidence 54443 256777777777654
No 40
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.76 E-value=3.5e-17 Score=133.72 Aligned_cols=144 Identities=27% Similarity=0.342 Sum_probs=77.2
Q ss_pred CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc
Q psy10233 22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101 (207)
Q Consensus 22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~ 101 (207)
.+.++++.|.++.++.+.++++|+.|++++|.+...+.+..+++|++|++++|.++.++.+..+++|+.|++++|.+...
T Consensus 179 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 179 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC
T ss_pred CCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccc
Confidence 44566666666655556666666666666666665544555566666666666555555555555566666665555554
Q ss_pred cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc
Q psy10233 102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV 171 (207)
Q Consensus 102 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~ 171 (207)
+.+..+++|+.|++++|.+++.+. +..+++|+.|++++|.+.+.. . +..+++|+.|++++|.+.
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 259 APLSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDIS--P-ISNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp GGGTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCG--G-GGGCTTCSEEECCSSCCS
T ss_pred hhhhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCch--h-hcCCCCCCEEECcCCcCC
Confidence 444455555555555555544322 334444444555444444321 1 334444444444444444
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=5.4e-18 Score=131.81 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=40.9
Q ss_pred CcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcce
Q psy10233 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLR 189 (207)
Q Consensus 110 L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~ 189 (207)
|+.|++++|.+++.. +..+..+++|+.|++++|.++.. +..+..+++|+.|++++|.+.+.+|.. +..+++|+
T Consensus 199 L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~ 271 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFD--LGKVGLSKNLNGLDLRNNRIYGTLPQG----LTQLKFLH 271 (313)
T ss_dssp CSEEECCSSEEEECC-GGGCCTTSCCSEEECCSSEECCB--GGGCCCCTTCCEEECCSSCCEECCCGG----GGGCTTCC
T ss_pred ccEEECcCCcccCcC-CHHHhcCCCCCEEECCCCceeee--cCcccccCCCCEEECcCCcccCcCChH----HhcCcCCC
Confidence 444444444433321 13455556666666666666542 222455566666666666666555553 45566666
Q ss_pred eccCc
Q psy10233 190 HLDDY 194 (207)
Q Consensus 190 ~L~~~ 194 (207)
.|+++
T Consensus 272 ~L~Ls 276 (313)
T 1ogq_A 272 SLNVS 276 (313)
T ss_dssp EEECC
T ss_pred EEECc
Confidence 66554
No 42
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=5.3e-17 Score=118.89 Aligned_cols=150 Identities=23% Similarity=0.315 Sum_probs=113.4
Q ss_pred eEEeecCCCcCccCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCccccccC--CccccCCcEEecCCCccc
Q psy10233 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIE 99 (207)
Q Consensus 24 ~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~~~~~ 99 (207)
.+.++.++++.++. .-.++++.|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.++
T Consensus 11 ~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 11 TVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 34555666654432 224578889999988887753 6788889999999888876643 677888999999988888
Q ss_pred cccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhh
Q psy10233 100 KIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN 176 (207)
Q Consensus 100 ~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 176 (207)
.++. +..+++|+.|++++|.+++++. ..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|++.+..+.
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~~~~ 166 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWDCTCPG 166 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBCCCTTT
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCH-hHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCCeecCCCC
Confidence 7743 6678889999999988887544 4577888899999999888864 345577888899999999888776553
No 43
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=1.5e-17 Score=124.36 Aligned_cols=167 Identities=14% Similarity=0.222 Sum_probs=138.0
Q ss_pred CCCCeEEeecCC-CcCcc--CccCCCCCCEEEeec-CCccCcc--CCccCCCCCEEEeecCccccccCCccccCCc---E
Q psy10233 20 SLNDVLYLHFKG-YTVIE--NLEEYTGLKCLWLEN-NGISKIE--NLDAQTEMRSIYMHHNLVKVMENLSHMQLLD---T 90 (207)
Q Consensus 20 ~~~~~l~l~~~~-~~~~~--~l~~l~~L~~L~l~~-~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~---~ 90 (207)
...+.++++.|. ++.++ .+.++++|+.|++++ |.+..++ .+..+++|++|++++|.++.++.+..+++|+ +
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~ 134 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFI 134 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccE
Confidence 456679999997 76554 678999999999998 9999875 3788999999999999998887788888888 9
Q ss_pred EecCCC-ccccccC--CCCCCCCc-EEEcCCCccCCccccccCCCCCCccEEEccCCC-CCChhhHHHhccC-CCCcEEE
Q psy10233 91 INLSHN-FIEKIEN--LSCLPVLR-TLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ-IEDEEVIEVFGAM-PELRVLT 164 (207)
Q Consensus 91 L~l~~~-~~~~~~~--~~~~~~L~-~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~-~~L~~l~ 164 (207)
|++++| .++.++. +..+++|+ .+++++|.++.++. ..+.. ++|+.|++++|. ++.. .+..+..+ ++|+.|+
T Consensus 135 L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~-~~~~~-~~L~~L~L~~n~~l~~i-~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-YAFNG-TKLDAVYLNKNKYLTVI-DKDAFGGVYSGPSLLD 211 (239)
T ss_dssp EEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT-TTTTT-CEEEEEECTTCTTCCEE-CTTTTTTCSBCCSEEE
T ss_pred EECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH-hhcCC-CCCCEEEcCCCCCcccC-CHHHhhccccCCcEEE
Confidence 999999 8988753 77889999 99999999987655 44554 799999999995 8864 35677888 9999999
Q ss_pred cCCCccccchhhHHHHHHHhCCcceeccCccc
Q psy10233 165 LSHNPCVGKIKNYRRMFINLCVNLRHLDDYPV 196 (207)
Q Consensus 165 l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~ 196 (207)
+++|.+. .+|.. .+++|+.|+++..
T Consensus 212 l~~N~l~-~l~~~------~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 212 VSQTSVT-ALPSK------GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCCC-CCCCT------TCTTCSEEECTTC
T ss_pred CCCCccc-cCChh------HhccCceeeccCc
Confidence 9999987 56653 5677777776653
No 44
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.8e-17 Score=139.24 Aligned_cols=148 Identities=28% Similarity=0.405 Sum_probs=133.4
Q ss_pred CCCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccc
Q psy10233 20 SLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIE 99 (207)
Q Consensus 20 ~~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~ 99 (207)
..++.++++.|.+..++.+..+++|+.|++++|.+..++.+..+++|++|++++|.+..++.+..+++|+.|+|++|.+.
T Consensus 65 ~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp TTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred CCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccC
Confidence 34567899999998777799999999999999999999999999999999999999998888999999999999999999
Q ss_pred cccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccc
Q psy10233 100 KIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGK 173 (207)
Q Consensus 100 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 173 (207)
.++.+..+++|+.|++++|.+.+.++ +..+++|+.|++++|.+++. ..+..+++|+.|++++|++.+.
T Consensus 145 ~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 145 DITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCGGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEECCSEEEECC
T ss_pred CchhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCC---hHHccCCCCCEEEccCCcCcCC
Confidence 88888899999999999999987543 78899999999999999874 3478899999999999998753
No 45
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=1.3e-17 Score=122.10 Aligned_cols=148 Identities=21% Similarity=0.331 Sum_probs=127.6
Q ss_pred CCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCccccccC--CccccCCcEEecC
Q psy10233 21 LNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLS 94 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~ 94 (207)
..+.+++++|+++.++ .+.++++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 4677999999987654 37899999999999999998854 7889999999999999976654 6889999999999
Q ss_pred CCccccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcccc
Q psy10233 95 HNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVG 172 (207)
Q Consensus 95 ~~~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~ 172 (207)
+|.++.++. +..+++|+.|++++|.+++++. ..+..+++|+.|++++|.+.. .++.++.|+++.|.+.|
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTT
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCH-HHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCc
Confidence 999988753 6788999999999999988655 568889999999999997764 56789999999999999
Q ss_pred chhhH
Q psy10233 173 KIKNY 177 (207)
Q Consensus 173 ~~~~~ 177 (207)
.+|..
T Consensus 180 ~ip~~ 184 (208)
T 2o6s_A 180 VVRNS 184 (208)
T ss_dssp TBBCT
T ss_pred eeecc
Confidence 99874
No 46
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.73 E-value=4.4e-17 Score=130.14 Aligned_cols=100 Identities=21% Similarity=0.290 Sum_probs=57.6
Q ss_pred CeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccccC--CccccCCcEEecCCC
Q psy10233 23 DVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHN 96 (207)
Q Consensus 23 ~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~~ 96 (207)
+.+++++|.++.+ ..+.++++|+.|++++|.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|
T Consensus 72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC
Confidence 3455555555432 24555666666666666665552 25566666666666666654433 455666666666666
Q ss_pred cccccc--CCCCCCCCcEEEcCCCccCC
Q psy10233 97 FIEKIE--NLSCLPVLRTLHLSHNRLKT 122 (207)
Q Consensus 97 ~~~~~~--~~~~~~~L~~L~l~~n~i~~ 122 (207)
.+..++ .+..+++|+.|++++|.++.
T Consensus 152 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 152 NLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred ccCccChhhccCCCCCCEEECCCCcCCc
Confidence 665552 25556666666666666554
No 47
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=3.9e-17 Score=140.99 Aligned_cols=168 Identities=21% Similarity=0.285 Sum_probs=120.0
Q ss_pred CCeEEeecCCCc--CccCccCCCCCCEEEeecCCccCc-c-CCccCCCCCEEEeecCccc--cccCCccccCCcEEecCC
Q psy10233 22 NDVLYLHFKGYT--VIENLEEYTGLKCLWLENNGISKI-E-NLDAQTEMRSIYMHHNLVK--VMENLSHMQLLDTINLSH 95 (207)
Q Consensus 22 ~~~l~l~~~~~~--~~~~l~~l~~L~~L~l~~~~l~~~-~-~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~L~~L~l~~ 95 (207)
.+.++++.|.+. .+..++++++|+.|++++|.+... | .++.+++|++|++++|.+. .+..+..+++|+.|++++
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 445666666664 234567777777777777777643 3 3667777788888777774 223467778888888887
Q ss_pred Ccccc-cc-----------------------------------------------------------------------C
Q psy10233 96 NFIEK-IE-----------------------------------------------------------------------N 103 (207)
Q Consensus 96 ~~~~~-~~-----------------------------------------------------------------------~ 103 (207)
|.+.+ +| .
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 76642 11 1
Q ss_pred CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHH
Q psy10233 104 LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFIN 183 (207)
Q Consensus 104 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 183 (207)
+..+++|+.|++++|.+++. .+..++.++.|+.|++++|.+++. +|..++.+++|+.|++++|.+.|.+|.. +.
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~g~-ip~~l~~L~~L~~LdLs~N~l~g~ip~~----l~ 701 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGY-IPKEIGSMPYLFILNLGHNDISGS-IPDEVGDLRGLNILDLSSNKLDGRIPQA----MS 701 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSC-CCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCEECCCGG----GG
T ss_pred hhccccccEEECcCCccccc-CCHHHhccccCCEEeCcCCccCCC-CChHHhCCCCCCEEECCCCcccCcCChH----Hh
Confidence 22345677888888888763 335678888888888888888865 6788888888888888888888888875 67
Q ss_pred hCCcceeccCcc
Q psy10233 184 LCVNLRHLDDYP 195 (207)
Q Consensus 184 ~~~~L~~L~~~~ 195 (207)
.++.|+.||+++
T Consensus 702 ~l~~L~~L~ls~ 713 (768)
T 3rgz_A 702 ALTMLTEIDLSN 713 (768)
T ss_dssp GCCCCSEEECCS
T ss_pred CCCCCCEEECcC
Confidence 888888888764
No 48
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=2.7e-17 Score=141.98 Aligned_cols=166 Identities=22% Similarity=0.282 Sum_probs=99.1
Q ss_pred HHhhhcCCccCCCCCCeEEeecCCCcC----------------------------ccCccCCCCCCEEEeecCCccC-c-
Q psy10233 8 KICKDNKLYLTPSLNDVLYLHFKGYTV----------------------------IENLEEYTGLKCLWLENNGISK-I- 57 (207)
Q Consensus 8 ~~c~~~~~~~~~~~~~~l~l~~~~~~~----------------------------~~~l~~l~~L~~L~l~~~~l~~-~- 57 (207)
..|.|.|+.|+...+..++++.+++.. ++.++++++|++|++++|.+.+ +
T Consensus 38 ~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~ 117 (768)
T 3rgz_A 38 NPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVT 117 (768)
T ss_dssp CGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGG
T ss_pred CCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCC
Confidence 479999999974444456665555422 1456777888888888887764 2
Q ss_pred c--CCccCCCCCEEEeecCccccc--cC-CccccCCcEEecCCCccccc---------------------------cCCC
Q psy10233 58 E--NLDAQTEMRSIYMHHNLVKVM--EN-LSHMQLLDTINLSHNFIEKI---------------------------ENLS 105 (207)
Q Consensus 58 ~--~~~~l~~L~~L~l~~n~~~~~--~~-~~~~~~L~~L~l~~~~~~~~---------------------------~~~~ 105 (207)
+ .++.+++|++|++++|.+... .. +..+++|++|++++|.+... ....
T Consensus 118 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 197 (768)
T 3rgz_A 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS 197 (768)
T ss_dssp GGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCT
T ss_pred ChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcc
Confidence 2 466777777777777766422 11 24556666666666655432 2223
Q ss_pred CCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhh
Q psy10233 106 CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN 176 (207)
Q Consensus 106 ~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 176 (207)
.+++|+.|++++|.+.+..+ .+..+++|++|++++|.+++. .+..++.+++|+.|++++|.+.+.+|.
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~--~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 265 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPP 265 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCC--BCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCC
T ss_pred cCCcCCEEECcCCcCCCCCc--ccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCc
Confidence 44555555555555544222 255666666666666666643 455666666666666666666554443
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=1.9e-18 Score=146.28 Aligned_cols=181 Identities=17% Similarity=0.178 Sum_probs=136.3
Q ss_pred HHhhh---cCCccCCC-CCCeEEeecCCCc--CccCccCCCCCCEEEeecCCc---------------------------
Q psy10233 8 KICKD---NKLYLTPS-LNDVLYLHFKGYT--VIENLEEYTGLKCLWLENNGI--------------------------- 54 (207)
Q Consensus 8 ~~c~~---~~~~~~~~-~~~~l~l~~~~~~--~~~~l~~l~~L~~L~l~~~~l--------------------------- 54 (207)
..|.| .|+.|+.. .+..++++.+++. .+++++++++|+.|++++|.+
T Consensus 65 ~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 144 (636)
T 4eco_A 65 ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMH 144 (636)
T ss_dssp CGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTH
T ss_pred CcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhh
Confidence 46889 99999765 4455778888874 567899999999999999854
Q ss_pred ---------------------------------------------------cCcc-CCccCCCCCEEEeecCcccc----
Q psy10233 55 ---------------------------------------------------SKIE-NLDAQTEMRSIYMHHNLVKV---- 78 (207)
Q Consensus 55 ---------------------------------------------------~~~~-~~~~l~~L~~L~l~~n~~~~---- 78 (207)
.++| .++.+++|++|++++|.++.
T Consensus 145 l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~ 224 (636)
T 4eco_A 145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENIC 224 (636)
T ss_dssp HHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBS
T ss_pred HHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCcccccccc
Confidence 1233 36778899999999998866
Q ss_pred --------------cc-CCc--cccCCcEEecCCCcccc-cc-CCCCCCCCcEEEcCCCc-cCCccccccCCC------C
Q psy10233 79 --------------ME-NLS--HMQLLDTINLSHNFIEK-IE-NLSCLPVLRTLHLSHNR-LKTIEDIEHLKD------C 132 (207)
Q Consensus 79 --------------~~-~~~--~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~------~ 132 (207)
++ .+. .+++|++|++++|.+.. +| .+..+++|+.|++++|. +++...+..+.. +
T Consensus 225 ~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l 304 (636)
T 4eco_A 225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304 (636)
T ss_dssp SSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGG
T ss_pred ccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccC
Confidence 44 466 89999999999997654 45 57788999999999997 765111123333 3
Q ss_pred CCccEEEccCCCCCChhhHH--HhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 133 PLLSIVDVSHNQIEDEEVIE--VFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 133 ~~L~~L~l~~n~l~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
++|+.|++++|.++. +|. .++.+++|+.|++++|.+.|.+| . +..+++|+.|+++.
T Consensus 305 ~~L~~L~L~~n~l~~--ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~----~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 305 EKIQIIYIGYNNLKT--FPVETSLQKMKKLGMLECLYNQLEGKLP-A----FGSEIKLASLNLAY 362 (636)
T ss_dssp GTCCEEECCSSCCSS--CCCHHHHTTCTTCCEEECCSCCCEEECC-C----CEEEEEESEEECCS
T ss_pred CCCCEEECCCCcCCc--cCchhhhccCCCCCEEeCcCCcCccchh-h----hCCCCCCCEEECCC
Confidence 788888998888884 565 78888888888888888887777 2 56677777776654
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.72 E-value=7.8e-17 Score=135.58 Aligned_cols=149 Identities=20% Similarity=0.223 Sum_probs=109.3
Q ss_pred EEeecCCCcCccCccCC-CCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccc
Q psy10233 25 LYLHFKGYTVIENLEEY-TGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIE 99 (207)
Q Consensus 25 l~l~~~~~~~~~~l~~l-~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~ 99 (207)
.+.++.+++.+|. .+ +++++|++++|.|..++ .|..+++|++|++++|.++.++ .|..+++|++|+|++|.++
T Consensus 36 ~~c~~~~l~~vP~--~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 36 YQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp EECTTSCCSSCCS--SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EECCCCCcCccCC--CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 3455555554431 23 36788888888888774 3778888888888888886653 3778888888888888887
Q ss_pred ccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhh
Q psy10233 100 KIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN 176 (207)
Q Consensus 100 ~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 176 (207)
.+| .+..+++|+.|++++|.+++++. ..++.+++|+.|++++|.++....+..++.+++|+.|++++|.+.+..+.
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCCh-hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 774 36778888888888888877654 45778888888888888887655567777788888888888887754444
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=4.3e-17 Score=128.61 Aligned_cols=151 Identities=18% Similarity=0.206 Sum_probs=126.7
Q ss_pred CCCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCccccccC---CccccCCcEEe
Q psy10233 20 SLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN---LSHMQLLDTIN 92 (207)
Q Consensus 20 ~~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~ 92 (207)
...+.++++.|.++.+ ..+.++++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence 3456788999988754 458999999999999999998854 7889999999999999977654 78899999999
Q ss_pred cCCC-cccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCc
Q psy10233 93 LSHN-FIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169 (207)
Q Consensus 93 l~~~-~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~ 169 (207)
+++| .++.++ .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+... ....+..+++|+.|++++|.
T Consensus 156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP-KSLKSIQNVSHLILHMKQHILL-LEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEEEECSCSTTH-HHHHHHHTTTEEEEEEESCB
T ss_pred CCCCccccccCHHHccCCCCCCEEECCCCCcCccCH-HHHhccccCCeecCCCCccccc-hhhhhhhcccccEEECCCCc
Confidence 9999 466663 57788999999999999987533 6788899999999999999874 24455678999999999999
Q ss_pred ccc
Q psy10233 170 CVG 172 (207)
Q Consensus 170 ~~~ 172 (207)
+.+
T Consensus 234 l~~ 236 (353)
T 2z80_A 234 LDT 236 (353)
T ss_dssp CTT
T ss_pred ccc
Confidence 875
No 52
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=2.1e-16 Score=125.20 Aligned_cols=145 Identities=22% Similarity=0.306 Sum_probs=66.5
Q ss_pred eEEeecCCCcCccCccCCCCCCEEEeecCCccCccC--Cc-cCCCCCEEEeecCcccccc--CCccccCCcEEecCCCcc
Q psy10233 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIEN--LD-AQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFI 98 (207)
Q Consensus 24 ~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~--~~-~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~ 98 (207)
.++++.++++.++. .-.+.++.|++++|.+..++. +. .+++|++|++++|.++.++ .|..+++|++|++++|.+
T Consensus 22 ~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 22 ILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp EEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 34444444443331 011234555555555554422 33 4555555555555554332 244555555555555555
Q ss_pred cccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHh---ccCCCCcEEEcCCCccc
Q psy10233 99 EKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVF---GAMPELRVLTLSHNPCV 171 (207)
Q Consensus 99 ~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~~L~~l~l~~n~~~ 171 (207)
+.++ .+..+++|+.|++++|.++.+.. ..+..+++|+.|++++|.++..+ ...+ ..+++|+.|++++|.+.
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECH-HHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCCCCC
Confidence 4442 24444555555555555544322 34445555555555555555421 2222 23455555555555544
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=1.4e-17 Score=129.63 Aligned_cols=147 Identities=18% Similarity=0.322 Sum_probs=112.9
Q ss_pred CCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc--CC-ccccCCcEEecCCCccccccCCCCCCCCcEEE
Q psy10233 40 EYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME--NL-SHMQLLDTINLSHNFIEKIENLSCLPVLRTLH 114 (207)
Q Consensus 40 ~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~--~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 114 (207)
.+++|+.|++++|.+..++ .+..+++|++|++++|.++... .+ ..+++|++|++++|.++.++....+++|+.|+
T Consensus 118 ~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~ 197 (317)
T 3o53_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLD 197 (317)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEE
T ss_pred ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEE
Confidence 3567888888888887763 4777888999999988886542 33 36788999999999888877666688899999
Q ss_pred cCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc-cchhhHHHHHHHhCCcceeccC
Q psy10233 115 LSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV-GKIKNYRRMFINLCVNLRHLDD 193 (207)
Q Consensus 115 l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~~~~~L~~L~~ 193 (207)
+++|.+++++. .+..+++|+.|++++|.++. ++..+..+++|+.|++++|++. +.++. .+..++.|+.++.
T Consensus 198 Ls~N~l~~l~~--~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~----~~~~~~~L~~l~l 269 (317)
T 3o53_A 198 LSSNKLAFMGP--EFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRD----FFSKNQRVQTVAK 269 (317)
T ss_dssp CCSSCCCEECG--GGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHH----HHHTCHHHHHHHH
T ss_pred CCCCcCCcchh--hhcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHH----HHhccccceEEEC
Confidence 99998887655 47778889999999998886 5666788889999999999887 33333 3666777776655
Q ss_pred c
Q psy10233 194 Y 194 (207)
Q Consensus 194 ~ 194 (207)
.
T Consensus 270 ~ 270 (317)
T 3o53_A 270 Q 270 (317)
T ss_dssp H
T ss_pred C
Confidence 4
No 54
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=1.1e-16 Score=130.04 Aligned_cols=129 Identities=13% Similarity=0.227 Sum_probs=100.9
Q ss_pred CCCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccC-c--cCCccCCCCCEEEeecCccccc--cCCccccCCcEEe
Q psy10233 20 SLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISK-I--ENLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTIN 92 (207)
Q Consensus 20 ~~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~-~--~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~ 92 (207)
...+.+++++|.++.+ ..++++++|+.|++++|.+.. + ..+..+++|++|++++|.+... ..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 3467789999988653 568899999999999998863 3 2478889999999999988654 3578889999999
Q ss_pred cCCCccccc--cC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCCh
Q psy10233 93 LSHNFIEKI--EN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDE 148 (207)
Q Consensus 93 l~~~~~~~~--~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 148 (207)
+++|.+... +. +..+++|+.|++++|.+++..+...+..+++|+.|++++|.+.+.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 999988752 22 777888999999999888764433477788888888888887764
No 55
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.71 E-value=1.4e-16 Score=127.25 Aligned_cols=166 Identities=22% Similarity=0.272 Sum_probs=89.9
Q ss_pred CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCcccccc--CCccccCCcEEecC
Q psy10233 21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLS 94 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~ 94 (207)
..+.+++++|.++.+ ..++++++|+.|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence 445566666666533 235666677777777776666543 456666666666666664432 25555666666666
Q ss_pred CCccccc-------------------------------------------------------------cCCCCCCCCcEE
Q psy10233 95 HNFIEKI-------------------------------------------------------------ENLSCLPVLRTL 113 (207)
Q Consensus 95 ~~~~~~~-------------------------------------------------------------~~~~~~~~L~~L 113 (207)
+|.++.+ +.+..+++|+.|
T Consensus 174 ~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L 253 (390)
T 3o6n_A 174 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEV 253 (390)
T ss_dssp SSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred CCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEE
Confidence 5554332 112233455555
Q ss_pred EcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccC
Q psy10233 114 HLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDD 193 (207)
Q Consensus 114 ~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~ 193 (207)
++++|.+++..+ ..+..+++|+.|++++|.+++ ++..+..+++|+.|++++|.+. .+|.. +..+++|+.|++
T Consensus 254 ~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~l~-~~~~~----~~~l~~L~~L~L 325 (390)
T 3o6n_A 254 DLSYNELEKIMY-HPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLL-HVERN----QPQFDRLENLYL 325 (390)
T ss_dssp ECCSSCCCEEES-GGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSCCC-CCGGG----HHHHTTCSEEEC
T ss_pred ECCCCcCCCcCh-hHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCcce-ecCcc----ccccCcCCEEEC
Confidence 555555544322 345555566666666665554 2333345566666666666655 33432 234455555544
Q ss_pred c
Q psy10233 194 Y 194 (207)
Q Consensus 194 ~ 194 (207)
.
T Consensus 326 ~ 326 (390)
T 3o6n_A 326 D 326 (390)
T ss_dssp C
T ss_pred C
Confidence 3
No 56
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=1.4e-16 Score=134.04 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=34.4
Q ss_pred CeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCcccccc--CCccccCCcEEecCCC
Q psy10233 23 DVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHN 96 (207)
Q Consensus 23 ~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~ 96 (207)
+.+++++|.+..++ .++++++|+.|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|+.|++++|
T Consensus 102 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence 34444444443221 23445555555555555544432 344555555555555443332 2444444444444444
Q ss_pred cc
Q psy10233 97 FI 98 (207)
Q Consensus 97 ~~ 98 (207)
.+
T Consensus 182 ~l 183 (597)
T 3oja_B 182 RL 183 (597)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 57
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.71 E-value=2.7e-16 Score=122.93 Aligned_cols=167 Identities=22% Similarity=0.280 Sum_probs=94.7
Q ss_pred CCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCc-c-CCccCCCCCEEEeecCccccccC---------------
Q psy10233 21 LNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKI-E-NLDAQTEMRSIYMHHNLVKVMEN--------------- 81 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~-~-~~~~l~~L~~L~l~~n~~~~~~~--------------- 81 (207)
..+.+++++|+++.++ .++++++|+.|++++|.+..+ + .+..+++|++|++++|.++.++.
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~ 132 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE 132 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCc
Confidence 4556788888876553 578888888888888888776 3 47777888888888776653321
Q ss_pred --------CccccCCcEEecCCCcccc--c--cCCCCCCCCcEEE---------------------cCCCccCCcccccc
Q psy10233 82 --------LSHMQLLDTINLSHNFIEK--I--ENLSCLPVLRTLH---------------------LSHNRLKTIEDIEH 128 (207)
Q Consensus 82 --------~~~~~~L~~L~l~~~~~~~--~--~~~~~~~~L~~L~---------------------l~~n~i~~~~~~~~ 128 (207)
+..+++|+.|++++|.+.. . ..+..+++|+.|+ +++|.+++... ..
T Consensus 133 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~-~~ 211 (330)
T 1xku_A 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA-AS 211 (330)
T ss_dssp CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECT-GG
T ss_pred ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCH-HH
Confidence 2334445555555544431 1 1122333344444 44443333211 34
Q ss_pred CCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233 129 LKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194 (207)
Q Consensus 129 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~ 194 (207)
+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+. .+|.. +..+++|+.|+++
T Consensus 212 ~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~-~lp~~----l~~l~~L~~L~l~ 271 (330)
T 1xku_A 212 LKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLV-KVPGG----LADHKYIQVVYLH 271 (330)
T ss_dssp GTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSSCCS-SCCTT----TTTCSSCCEEECC
T ss_pred hcCCCCCCEEECCCCcCcee-ChhhccCCCCCCEEECCCCcCc-cCChh----hccCCCcCEEECC
Confidence 45555666666666665543 2334555666666666666655 44443 4455666666554
No 58
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=4.5e-17 Score=137.00 Aligned_cols=161 Identities=20% Similarity=0.292 Sum_probs=130.1
Q ss_pred hhhcCCccCCC----CCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc-
Q psy10233 10 CKDNKLYLTPS----LNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME- 80 (207)
Q Consensus 10 c~~~~~~~~~~----~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~- 80 (207)
|...+.+..|. .++.+++++|.++.++ ++.++++|++|++++|.+..++ .|..+++|++|++++|.++.++
T Consensus 38 c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 38 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp CTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 55556665553 5678999999998664 6899999999999999999884 3899999999999999997764
Q ss_pred -CCccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccC
Q psy10233 81 -NLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157 (207)
Q Consensus 81 -~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 157 (207)
.|..+++|++|++++|.++.++ .+..+++|+.|++++|.++.+..+..+..+++|++|++++|.++... +..+..+
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L 196 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVL 196 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc-cccccch
Confidence 3789999999999999998885 47889999999999999988666567888999999999999998742 3333322
Q ss_pred C----CCcEEEcCCCccc
Q psy10233 158 P----ELRVLTLSHNPCV 171 (207)
Q Consensus 158 ~----~L~~l~l~~n~~~ 171 (207)
. ....++++.|.+.
T Consensus 197 ~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp HTCTTCCCEEECTTCCCC
T ss_pred hhhhhhhhhhhcccCccc
Confidence 2 2345777777654
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=1.4e-16 Score=121.48 Aligned_cols=149 Identities=21% Similarity=0.233 Sum_probs=122.9
Q ss_pred EEeecCCCcCcc-CccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccc
Q psy10233 25 LYLHFKGYTVIE-NLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIE 99 (207)
Q Consensus 25 l~l~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~ 99 (207)
+.....+++.++ .+. ++++.|++++|.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+.
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 344455554443 332 57999999999999874 5889999999999999997664 4888999999999999998
Q ss_pred ccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhh
Q psy10233 100 KIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN 176 (207)
Q Consensus 100 ~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 176 (207)
.++ .+..+++|+.|++++|.+.+.+. ..+..+++|+.|++++|.++...++..++.+++|+.|++++|.+.+..+.
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred ccChhhhcCCccccEEECCCCCccccCc-hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 774 47889999999999999988655 46888999999999999998755678889999999999999998754443
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.71 E-value=4.5e-17 Score=135.76 Aligned_cols=180 Identities=19% Similarity=0.254 Sum_probs=130.3
Q ss_pred hhhcCCccCC----CCCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc-
Q psy10233 10 CKDNKLYLTP----SLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME- 80 (207)
Q Consensus 10 c~~~~~~~~~----~~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~- 80 (207)
|...+.+..| ...+.+++++|.++.+ ..+.++++|++|++++|.+..++ .+..+++|++|++++|.++..+
T Consensus 14 c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (570)
T ss_dssp CCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred eCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH
Confidence 4444444433 3456788888888654 36788888999999988888764 3788888999999988886553
Q ss_pred -CCccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccC
Q psy10233 81 -NLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157 (207)
Q Consensus 81 -~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 157 (207)
.+..+++|++|++++|.+..++ .+..+++|+.|++++|.++++..+..+..+++|++|++++|.++.. .+..++.+
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l 172 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVL 172 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE-CGGGGHHH
T ss_pred hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee-cHHHccch
Confidence 4788888999999988888775 3778888999999998887754445778888899999999888764 34555566
Q ss_pred CCC----cEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 158 PEL----RVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 158 ~~L----~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
++| ..+++++|.+.+..+.. +..+ +|+.|++..
T Consensus 173 ~~L~~~~~~L~l~~n~l~~~~~~~----~~~~-~L~~L~l~~ 209 (570)
T 2z63_A 173 HQMPLLNLSLDLSLNPMNFIQPGA----FKEI-RLHKLTLRN 209 (570)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTT----TTTC-EEEEEEEES
T ss_pred hccchhhhhcccCCCCceecCHHH----hccC-cceeEeccc
Confidence 666 78888888877544432 2222 566665543
No 61
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.71 E-value=2.1e-16 Score=132.80 Aligned_cols=171 Identities=20% Similarity=0.177 Sum_probs=138.2
Q ss_pred CCCCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCc-c-CCccCCCCCEEEeecCccccc--cCCccccCCcEEe
Q psy10233 19 PSLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKI-E-NLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTIN 92 (207)
Q Consensus 19 ~~~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~-~-~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~ 92 (207)
|...+.+++++|.++.+ ..++++++|++|++++|.+... + .|..+++|++|++++|.+... ..+..+++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 34667899999998754 4789999999999999999876 3 488999999999999988655 3588999999999
Q ss_pred cCCCccccc--cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCc--EEEcCCC
Q psy10233 93 LSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELR--VLTLSHN 168 (207)
Q Consensus 93 l~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~--~l~l~~n 168 (207)
+++|.+..+ ..+..+++|+.|++++|.+++++.+ .+..+++|+.|++++|.++.. .+..++.+++|+ .+++++|
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYL-SKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC-TTCCCTTCCEEECCSSCCCEE-CHHHHHTTTTCCSEEEECTTC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcc-cccCCcccCEEEcccCccccc-ChhhhhhhcccceeEEecCCC
Confidence 999999886 3578889999999999999886543 344489999999999999875 477788899999 8999999
Q ss_pred ccccchhhHHHHHHHhCCcceeccCccc
Q psy10233 169 PCVGKIKNYRRMFINLCVNLRHLDDYPV 196 (207)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~L~~L~~~~~ 196 (207)
.+.+..|.. ....+|+.|++...
T Consensus 190 ~l~~~~~~~-----~~~~~L~~L~l~~~ 212 (606)
T 3t6q_A 190 DIAGIEPGA-----FDSAVFQSLNFGGT 212 (606)
T ss_dssp CCCEECTTT-----TTTCEEEEEECTTC
T ss_pred ccCccChhH-----hhhccccccccCCc
Confidence 988665542 23456777776554
No 62
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.71 E-value=2.2e-16 Score=134.44 Aligned_cols=168 Identities=24% Similarity=0.220 Sum_probs=134.1
Q ss_pred CCCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCcc-C-CccCCCCCEEEeecCccccccC--CccccCCcEEec
Q psy10233 20 SLNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKIE-N-LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINL 93 (207)
Q Consensus 20 ~~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~-~-~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l 93 (207)
..++.+++++|+++.++ .++++++|++|++++|.+...+ . +..+++|++|++++|.++.++. +..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 35677899999987553 5889999999999999998873 3 7889999999999999877653 889999999999
Q ss_pred CCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhc--cCCCCcEEEcCCCc
Q psy10233 94 SHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG--AMPELRVLTLSHNP 169 (207)
Q Consensus 94 ~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~L~~l~l~~n~ 169 (207)
++|.+..++ .+..+++|+.|++++|.+++.+. ..+..+++|++|++++|.+++.. +..+. .+++|+.|++++|.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALK-SEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCCCBC-HHHHGGGTTCEESEEECTTCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCc-hhhcccccCCEEEccCCcccccC-HHHhhccccccccEEECCCCc
Confidence 999998774 47888999999999999887544 56788999999999999998753 44433 56899999999998
Q ss_pred cccchhhHHHHHHHhCCcceeccC
Q psy10233 170 CVGKIKNYRRMFINLCVNLRHLDD 193 (207)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~L~~L~~ 193 (207)
+.+..+.. +..+.+|+.+++
T Consensus 183 l~~~~~~~----~~~l~~L~~L~l 202 (680)
T 1ziw_A 183 IKEFSPGC----FHAIGRLFGLFL 202 (680)
T ss_dssp CCCBCTTG----GGGSSEECEEEC
T ss_pred ccccChhh----hhhhhhhhhhhc
Confidence 87655543 445555554443
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.71 E-value=4.9e-17 Score=136.69 Aligned_cols=166 Identities=16% Similarity=0.178 Sum_probs=106.9
Q ss_pred CeEEeecCCCcCc-cCccCCCCCCEEEeecCCccCc---cCCccCCCCCEEEeecCccccc--cCCccccCCcEEecCCC
Q psy10233 23 DVLYLHFKGYTVI-ENLEEYTGLKCLWLENNGISKI---ENLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINLSHN 96 (207)
Q Consensus 23 ~~l~l~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~---~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~~ 96 (207)
+.++++.|.+..+ ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+... ..+..+++|++|++++|
T Consensus 379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp CEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred cEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence 3444445544322 3455666666666666666554 2355667777777777766432 23666777777777777
Q ss_pred cccc--cc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccc
Q psy10233 97 FIEK--IE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGK 173 (207)
Q Consensus 97 ~~~~--~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 173 (207)
.+.. .| .+..+++|+.|++++|.+++.++ ..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+. .
T Consensus 459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~-~ 535 (606)
T 3vq2_A 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-GVFDTLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDCSFNRIE-T 535 (606)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCE-EGGGTTTCTTCCEEECTTSCCC-C
T ss_pred cCCCcchHHhhccCCCCCEEECCCCcCCccCh-hhhcccccCCEEECCCCcCCCc-CHHHccCCCcCCEEECCCCcCc-c
Confidence 7664 23 36667777777777777766433 4567777788888888877765 3666777778888888888776 5
Q ss_pred hhhHHHHHHHhCC-cceeccCcc
Q psy10233 174 IKNYRRMFINLCV-NLRHLDDYP 195 (207)
Q Consensus 174 ~~~~~~~~~~~~~-~L~~L~~~~ 195 (207)
+|.. +..++ +|+.|++.+
T Consensus 536 ~p~~----~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 536 SKGI----LQHFPKSLAFFNLTN 554 (606)
T ss_dssp EESC----GGGSCTTCCEEECCS
T ss_pred cCHh----HhhhcccCcEEEccC
Confidence 5653 45554 477776653
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=2.4e-17 Score=128.34 Aligned_cols=167 Identities=20% Similarity=0.182 Sum_probs=108.7
Q ss_pred CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCC----------------
Q psy10233 21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENL---------------- 82 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~---------------- 82 (207)
..+.+++++|.++.+ ..+.++++|+.|++++|.+...+.+..+++|++|++++|.++.++..
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~ 114 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEE
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCc
Confidence 466788888888654 36788899999999999887765577888888888888877543311
Q ss_pred --ccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCC
Q psy10233 83 --SHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP 158 (207)
Q Consensus 83 --~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 158 (207)
..+++|++|++++|.++.++ .+..+++|+.|++++|.+++.........+++|+.|++++|.++.. +. ...++
T Consensus 115 ~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~-~~~l~ 191 (317)
T 3o53_A 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KG-QVVFA 191 (317)
T ss_dssp EECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--EC-CCCCT
T ss_pred CccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--cc-ccccc
Confidence 12345566666666665542 3445566777777777666544322334566677777777776653 22 22467
Q ss_pred CCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 159 ELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 159 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
+|+.|++++|.+.+ +|.. +..+++|+.|+++.
T Consensus 192 ~L~~L~Ls~N~l~~-l~~~----~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 192 KLKTLDLSSNKLAF-MGPE----FQSAAGVTWISLRN 223 (317)
T ss_dssp TCCEEECCSSCCCE-ECGG----GGGGTTCSEEECTT
T ss_pred cCCEEECCCCcCCc-chhh----hcccCcccEEECcC
Confidence 77777777777763 3332 55677777777654
No 65
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=1.4e-16 Score=110.68 Aligned_cols=130 Identities=24% Similarity=0.360 Sum_probs=99.0
Q ss_pred CCCCCEEEeecCccc--cccC-CccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEE
Q psy10233 63 QTEMRSIYMHHNLVK--VMEN-LSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVD 139 (207)
Q Consensus 63 l~~L~~L~l~~n~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~ 139 (207)
.++++.|++++|.++ .++. +..+++|++|++++|.++.++.+..+++|+.|++++|.+++. .+..+..+++|+.|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEE
Confidence 456777777777776 4433 567778888888888777766677788888888888888773 223556678899999
Q ss_pred ccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233 140 VSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194 (207)
Q Consensus 140 l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~ 194 (207)
+++|.+++...+..++.+++|+.|++++|++.+ ++......+..+++|+.||++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCC
Confidence 999999885445778899999999999999874 454444468899999999875
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=4.4e-17 Score=133.93 Aligned_cols=167 Identities=20% Similarity=0.180 Sum_probs=107.8
Q ss_pred CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCC----------------
Q psy10233 21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENL---------------- 82 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~---------------- 82 (207)
.+..+++++|++..+ ..++++++|+.|++++|.+...+.+..+++|++|++++|.++.++..
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~ 114 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCC
Confidence 466789999988654 46889999999999999988765588888999999998877654321
Q ss_pred --ccccCCcEEecCCCccccc-c-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCC
Q psy10233 83 --SHMQLLDTINLSHNFIEKI-E-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP 158 (207)
Q Consensus 83 --~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 158 (207)
..+++|+.|++++|.++.+ | .+..+++|+.|++++|.+++..+......+++|+.|++++|.+++. +. ...++
T Consensus 115 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~-~~~l~ 191 (487)
T 3oja_A 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KG-QVVFA 191 (487)
T ss_dssp EECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--EC-CCCCT
T ss_pred CccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cc-cccCC
Confidence 1234455555555555544 2 3445566666666666665543322223556666666666666653 22 22466
Q ss_pred CCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 159 ELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 159 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
+|+.|++++|.+.+..+. +..+++|+.|+++.
T Consensus 192 ~L~~L~Ls~N~l~~~~~~-----~~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 192 KLKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRN 223 (487)
T ss_dssp TCCEEECCSSCCCEECGG-----GGGGTTCSEEECTT
T ss_pred CCCEEECCCCCCCCCCHh-----HcCCCCccEEEecC
Confidence 777777777777643332 45667777777654
No 67
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=2.8e-16 Score=132.15 Aligned_cols=101 Identities=21% Similarity=0.284 Sum_probs=65.7
Q ss_pred CCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCccccccC--CccccCCcEEecCC
Q psy10233 22 NDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSH 95 (207)
Q Consensus 22 ~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~ 95 (207)
...++++.|.++.+ ..++.+++|+.|++++|.+..++. ++.+++|++|++++|.++.++. +..+++|++|++++
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~ 156 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence 34556666665433 256667777777777777766532 5667777777777777765543 46677777777777
Q ss_pred Ccccccc--CCCCCCCCcEEEcCCCccCC
Q psy10233 96 NFIEKIE--NLSCLPVLRTLHLSHNRLKT 122 (207)
Q Consensus 96 ~~~~~~~--~~~~~~~L~~L~l~~n~i~~ 122 (207)
|.+..++ .+..+++|+.|++++|.+++
T Consensus 157 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 157 NNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 7776653 36666777777777776654
No 68
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.70 E-value=2.2e-16 Score=123.37 Aligned_cols=107 Identities=20% Similarity=0.221 Sum_probs=77.3
Q ss_pred cCCcEEecCCCccccc--cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEE
Q psy10233 86 QLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVL 163 (207)
Q Consensus 86 ~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l 163 (207)
++|++|++++|.++.+ ..+..+++|+.|++++|.+++.+. ..+..+++|+.|++++|.++. ++..+..+++|+.|
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L 268 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVV 268 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEE
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcCcc--CChhhccCCCcCEE
Confidence 4566666666666555 247778999999999999988544 567888999999999999986 57778899999999
Q ss_pred EcCCCccccchhhHHHH--HHHhCCcceeccCcc
Q psy10233 164 TLSHNPCVGKIKNYRRM--FINLCVNLRHLDDYP 195 (207)
Q Consensus 164 ~l~~n~~~~~~~~~~~~--~~~~~~~L~~L~~~~ 195 (207)
++++|.+.+..+..... .......++.|++..
T Consensus 269 ~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred ECCCCcCCccChhhcCCcccccccccccceEeec
Confidence 99999987533322100 011235666666643
No 69
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.70 E-value=3.3e-16 Score=127.73 Aligned_cols=161 Identities=22% Similarity=0.260 Sum_probs=112.1
Q ss_pred CCCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc
Q psy10233 21 LNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK 100 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~ 100 (207)
..+.++++.++++.+++++.+++|+.|++++|.+..++ +..+++|++|++++|.++.++ +..+++|++|++++|.++.
T Consensus 43 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~ 120 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTK 120 (457)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSC
T ss_pred CCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCe
Confidence 45678888888877778888889999999998888875 777888888888888887664 7778888888888888877
Q ss_pred ccCCCCCCCCcEEEcCCCccCCcccc------------------ccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcE
Q psy10233 101 IENLSCLPVLRTLHLSHNRLKTIEDI------------------EHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRV 162 (207)
Q Consensus 101 ~~~~~~~~~L~~L~l~~n~i~~~~~~------------------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 162 (207)
++ +..+++|+.|++++|.+++++.. ..+..+++|+.|++++|.+++. + +..+++|+.
T Consensus 121 l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l--~--l~~l~~L~~ 195 (457)
T 3bz5_A 121 LD-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL--D--VSQNKLLNR 195 (457)
T ss_dssp CC-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC--C--CTTCTTCCE
T ss_pred ec-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee--c--cccCCCCCE
Confidence 64 66777888888888877664210 0133445556666666666552 2 455666666
Q ss_pred EEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 163 LTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 163 l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
|++++|.+.+. + +..+++|+.|+++.
T Consensus 196 L~l~~N~l~~~-~------l~~l~~L~~L~Ls~ 221 (457)
T 3bz5_A 196 LNCDTNNITKL-D------LNQNIQLTFLDCSS 221 (457)
T ss_dssp EECCSSCCSCC-C------CTTCTTCSEEECCS
T ss_pred EECcCCcCCee-c------cccCCCCCEEECcC
Confidence 66666666542 1 44566666666553
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=4e-17 Score=126.79 Aligned_cols=151 Identities=20% Similarity=0.134 Sum_probs=71.3
Q ss_pred CCCeEEeecCCCc-C-ccCc--cCCCCCCEEEeecCCccCccC-CccC-----CCCCEEEeecCcccccc--CCccccCC
Q psy10233 21 LNDVLYLHFKGYT-V-IENL--EEYTGLKCLWLENNGISKIEN-LDAQ-----TEMRSIYMHHNLVKVME--NLSHMQLL 88 (207)
Q Consensus 21 ~~~~l~l~~~~~~-~-~~~l--~~l~~L~~L~l~~~~l~~~~~-~~~l-----~~L~~L~l~~n~~~~~~--~~~~~~~L 88 (207)
..+.++++.|.++ . +..+ ..+++|+.|++++|.+...+. +..+ ++|++|++++|.+...+ .+..+++|
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 4455666666664 2 2333 566666666666666665532 3333 55666666666554432 35555566
Q ss_pred cEEecCCCccccc----cCC--CCCCCCcEEEcCCCccCCcccc--ccCCCCCCccEEEccCCCCCChhhHHHhccCCCC
Q psy10233 89 DTINLSHNFIEKI----ENL--SCLPVLRTLHLSHNRLKTIEDI--EHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPEL 160 (207)
Q Consensus 89 ~~L~l~~~~~~~~----~~~--~~~~~L~~L~l~~n~i~~~~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L 160 (207)
++|++++|.+... +.+ ..+++|+.|++++|.+++.+.. ..+..+++|+.|++++|.+++......+..+++|
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 6666665553221 111 4445555555555555432110 1122334444444444444432101222233444
Q ss_pred cEEEcCCCccc
Q psy10233 161 RVLTLSHNPCV 171 (207)
Q Consensus 161 ~~l~l~~n~~~ 171 (207)
+.|++++|.+.
T Consensus 256 ~~L~Ls~N~l~ 266 (312)
T 1wwl_A 256 NSLNLSFTGLK 266 (312)
T ss_dssp CEEECTTSCCS
T ss_pred CEEECCCCccC
Confidence 44444444443
No 71
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=5.3e-17 Score=115.01 Aligned_cols=131 Identities=26% Similarity=0.292 Sum_probs=78.9
Q ss_pred CCCCCEEEeecCCcc--CccC-CccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc-ccCC-CCCCCCcEEEc
Q psy10233 41 YTGLKCLWLENNGIS--KIEN-LDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK-IENL-SCLPVLRTLHL 115 (207)
Q Consensus 41 l~~L~~L~l~~~~l~--~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~-~~~~~L~~L~l 115 (207)
.++|+.|++++|.+. .++. +..+++|++|++++|.++.++.+..+++|++|++++|.+.. +|.. ..+++|+.|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 356777777777776 4543 46667777777777766655556666667777777666655 3332 23566666666
Q ss_pred CCCccCCccccccCCCCCCccEEEccCCCCCChhh--HHHhccCCCCcEEEcCCCccc
Q psy10233 116 SHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEV--IEVFGAMPELRVLTLSHNPCV 171 (207)
Q Consensus 116 ~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~L~~l~l~~n~~~ 171 (207)
++|.+++++....+..+++|+.|++++|.++.... ...+..+++|+.|++++|...
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666655433455556666666666666655311 125556666666666666543
No 72
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.70 E-value=3e-17 Score=117.24 Aligned_cols=134 Identities=23% Similarity=0.309 Sum_probs=114.4
Q ss_pred cCccCCCCCCEEEeecCCccCccCCccCC-CCCEEEeecCccccccCCccccCCcEEecCCCccccccC--CCCCCCCcE
Q psy10233 36 ENLEEYTGLKCLWLENNGISKIENLDAQT-EMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRT 112 (207)
Q Consensus 36 ~~l~~l~~L~~L~l~~~~l~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~ 112 (207)
+.+.++.+|+.|++++|.+..++.+..+. +|++|++++|.++.++.+..+++|++|++++|.++.++. +..+++|+.
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 44567789999999999999888776665 999999999999888888899999999999999988753 367899999
Q ss_pred EEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHH----HhccCCCCcEEEcCCCccc
Q psy10233 113 LHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE----VFGAMPELRVLTLSHNPCV 171 (207)
Q Consensus 113 L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~----~~~~~~~L~~l~l~~n~~~ 171 (207)
|++++|.++.++....+..+++|+.|++++|.++.. +. .+..+++|+.|++++|...
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~--~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK--KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS--TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc--HhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999998876545788899999999999999763 44 4789999999999999854
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.70 E-value=9.9e-17 Score=133.27 Aligned_cols=169 Identities=17% Similarity=0.245 Sum_probs=133.1
Q ss_pred CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccccC--CccccCCcEEecC
Q psy10233 21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLS 94 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~ 94 (207)
..+.+++++|.++.+ ..++++++|++|++++|.+...+ .+..+++|++|++++|.++..+. ++.+++|++|+++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 566788999988654 56889999999999999998874 48889999999999998876543 7889999999999
Q ss_pred CCccccc---cCCCCCCCCcEEEcCCCc-cCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcc
Q psy10233 95 HNFIEKI---ENLSCLPVLRTLHLSHNR-LKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPC 170 (207)
Q Consensus 95 ~~~~~~~---~~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~ 170 (207)
+|.+..+ +.+..+++|+.|++++|. +..++. ..+..+++|++|++++|.+++. .+..++.+++|+.|+++.|..
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKALSLRNY-QSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEE-CTTTTTTCSEEEEEEEECSBS
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCH-hhhhcccccCeeeccCCccccc-ChhhhhccccCceEecccCcc
Confidence 9988754 357788999999999997 444332 5678889999999999988875 466777888888888888876
Q ss_pred ccchhhHHHHHHHhCCcceeccCcc
Q psy10233 171 VGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 171 ~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
. .++.. +...+++|++|+++.
T Consensus 185 ~-~~~~~---~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 185 A-FLLEI---FADILSSVRYLELRD 205 (549)
T ss_dssp T-THHHH---HHHSTTTBSEEEEES
T ss_pred c-ccchh---hHhhcccccEEEccC
Confidence 4 45543 345677887777654
No 74
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=2.6e-16 Score=124.61 Aligned_cols=154 Identities=22% Similarity=0.329 Sum_probs=128.2
Q ss_pred CCCCeEEeecCCCcCcc--Ccc-CCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccccC--CccccCCcEEe
Q psy10233 20 SLNDVLYLHFKGYTVIE--NLE-EYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTIN 92 (207)
Q Consensus 20 ~~~~~l~l~~~~~~~~~--~l~-~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~ 92 (207)
...+.+++++|.++.++ .+. ++++|+.|++++|.+..++ .|..+++|++|++++|.++.++. |..+++|+.|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 35678999999997653 355 8999999999999999875 48899999999999999977643 78999999999
Q ss_pred cCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccC---CCCCCccEEEccCCCCCChhhHHHhccCCC--CcEEEc
Q psy10233 93 LSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHL---KDCPLLSIVDVSHNQIEDEEVIEVFGAMPE--LRVLTL 165 (207)
Q Consensus 93 l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~--L~~l~l 165 (207)
+++|.+..++ .+..+++|+.|++++|.++.++. ..+ ..+++|+.|++++|.++... +..+..++. ++.|++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLP-LTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCC-HHHHHHSCHHHHTTEEC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccC-HHHhhhccHhhcceEEe
Confidence 9999998773 58889999999999999998765 344 56899999999999999863 566777776 488999
Q ss_pred CCCccccchh
Q psy10233 166 SHNPCVGKIK 175 (207)
Q Consensus 166 ~~n~~~~~~~ 175 (207)
++|++.++..
T Consensus 197 ~~N~~~C~C~ 206 (361)
T 2xot_A 197 HNNPLECDCK 206 (361)
T ss_dssp CSSCEECCHH
T ss_pred cCCCccCCcC
Confidence 9999986543
No 75
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.70 E-value=4.2e-16 Score=126.69 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=17.3
Q ss_pred CCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc
Q psy10233 129 LKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV 171 (207)
Q Consensus 129 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~ 171 (207)
+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+.
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRAL-GDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCS
T ss_pred hcCcccCCEEECCCCccccc-ChhhccccccccEEECCCCccc
Confidence 33344444444444444332 1333344444444444444443
No 76
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=2.8e-16 Score=116.23 Aligned_cols=143 Identities=20% Similarity=0.270 Sum_probs=122.2
Q ss_pred CEEEeecCCccCccC-CccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccccc-c-CCCCCCCCcEEEcCCCc
Q psy10233 45 KCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIEKI-E-NLSCLPVLRTLHLSHNR 119 (207)
Q Consensus 45 ~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~ 119 (207)
+.++++++.+..+|. +. ++++.|++++|.++.++ .+..+++|++|++++|.++.+ + .+..+++|+.|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 578999999988875 32 68999999999998765 588899999999999999887 3 58889999999999999
Q ss_pred cCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 120 LKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 120 i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
++.++. ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+.+..+. .+..+++|+.|++..
T Consensus 92 l~~l~~-~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 92 ITELPK-SLFEGLFSLQLLLLNANKINCL-RVDAFQDLHNLNLLSLYDNKLQTIAKG----TFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCCCCT-TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCS
T ss_pred CCccCH-hHccCCCCCCEEECCCCCCCEe-CHHHcCCCCCCCEEECCCCcCCEECHH----HHhCCCCCCEEEeCC
Confidence 998755 5678899999999999999986 467888999999999999999865544 366789999888764
No 77
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=2.5e-16 Score=116.44 Aligned_cols=145 Identities=20% Similarity=0.228 Sum_probs=122.7
Q ss_pred CCEEEeecCCccCccCCccCCCCCEEEeecCcccccc---CCccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCC
Q psy10233 44 LKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVME---NLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHN 118 (207)
Q Consensus 44 L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n 118 (207)
-+.+++++|.+..+|.. -...+++|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|+.|++++|
T Consensus 13 ~~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TTEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 35899999999988751 1345789999999997763 2788999999999999998874 5888999999999999
Q ss_pred ccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 119 RLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 119 ~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
.+++++. ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+.+..|.. +..+++|+.|++..
T Consensus 92 ~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 92 RLENVQH-KMFKGLESLKTLMLRSNRITCV-GNDSFIGLSSVRLLSLYDNQITTVAPGA----FDTLHSLSTLNLLA 162 (220)
T ss_dssp CCCCCCG-GGGTTCSSCCEEECTTSCCCCB-CTTSSTTCTTCSEEECTTSCCCCBCTTT----TTTCTTCCEEECCS
T ss_pred ccCccCH-hHhcCCcCCCEEECCCCcCCeE-CHhHcCCCccCCEEECCCCcCCEECHHH----hcCCCCCCEEEecC
Confidence 9988655 5688999999999999999985 4677889999999999999998766654 67899999998764
No 78
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.69 E-value=1.2e-16 Score=134.19 Aligned_cols=150 Identities=18% Similarity=0.260 Sum_probs=91.4
Q ss_pred CCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccCc-c-CCccCCCCCEEEeecCccccc--cCCccccCCcEEecC
Q psy10233 21 LNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKI-E-NLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINLS 94 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~-~-~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~ 94 (207)
.++.+++++|.++.++ .+.++++|++|++++|.+..+ + .|..+++|++|++++|.++.. ..+..+++|++|+++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence 4455667777665432 466777777777777776665 2 366677777777777766544 236667777777777
Q ss_pred CCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCC----CcEEEcCCC
Q psy10233 95 HNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE----LRVLTLSHN 168 (207)
Q Consensus 95 ~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~----L~~l~l~~n 168 (207)
+|.+..++ .+..+++|+.|++++|.+++...+..+..+++|++|++++|.+++. .+..++.+++ +..+++++|
T Consensus 113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI-TVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE-CTTTTHHHHHCTTCCCEEECTTC
T ss_pred CCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec-ChhhhhhhhccccccceeeccCC
Confidence 77766553 3666677777777777766533334566677777777777766653 1222322222 224555555
Q ss_pred ccc
Q psy10233 169 PCV 171 (207)
Q Consensus 169 ~~~ 171 (207)
.+.
T Consensus 192 ~l~ 194 (606)
T 3vq2_A 192 PID 194 (606)
T ss_dssp CCC
T ss_pred Ccc
Confidence 544
No 79
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.69 E-value=6.4e-17 Score=134.43 Aligned_cols=165 Identities=17% Similarity=0.186 Sum_probs=135.8
Q ss_pred EeecCCCcCccCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccccc
Q psy10233 26 YLHFKGYTVIENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIEKI 101 (207)
Q Consensus 26 ~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~~~ 101 (207)
+.+.++++.++. .-.+++++|++++|.+...+ .+..+++|++|++++|.++..+ .+..+++|++|++++|.+..+
T Consensus 11 ~~~~~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 11 DGRSRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp ECTTSCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred ECCCCccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence 555667765543 12378999999999998873 4899999999999999997664 488999999999999999887
Q ss_pred c--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHH
Q psy10233 102 E--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRR 179 (207)
Q Consensus 102 ~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 179 (207)
+ .+..+++|+.|++++|.+++.+.+..+..+++|+.|++++|.+.+...+..+..+++|+.|++++|.+.+..|..
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-- 167 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-- 167 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT--
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh--
Confidence 4 388899999999999999876555678999999999999998443322457789999999999999998877764
Q ss_pred HHHHhCCcceeccCcc
Q psy10233 180 MFINLCVNLRHLDDYP 195 (207)
Q Consensus 180 ~~~~~~~~L~~L~~~~ 195 (207)
+..+++|+.|++..
T Consensus 168 --l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 168 --LKSIRDIHHLTLHL 181 (549)
T ss_dssp --TTTCSEEEEEEEEC
T ss_pred --hhccccCceEeccc
Confidence 67889999988754
No 80
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.68 E-value=3.6e-16 Score=122.36 Aligned_cols=166 Identities=22% Similarity=0.255 Sum_probs=105.3
Q ss_pred CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccC--CccccCCcEEecCCC
Q psy10233 21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHN 96 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~~ 96 (207)
..+.++++.|.++.+ ..++++++|+.|++++|.+..++.... ++|++|++++|.++.++. +..+++|+.|++++|
T Consensus 79 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC
T ss_pred CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC
Confidence 455678888887643 567888888888888888877654211 667777777777655432 566666777777666
Q ss_pred ccccc---c-CCCCC--------------------CCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHH
Q psy10233 97 FIEKI---E-NLSCL--------------------PVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE 152 (207)
Q Consensus 97 ~~~~~---~-~~~~~--------------------~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 152 (207)
.++.. + .+..+ ++|+.|++++|.+++.+. ..+..+++|+.|++++|.+++. .+.
T Consensus 158 ~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~L~~N~l~~~-~~~ 235 (332)
T 2ft3_A 158 PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL-EDLLRYSKLYRLGLGHNQIRMI-ENG 235 (332)
T ss_dssp CCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCT-TSSTTCTTCSCCBCCSSCCCCC-CTT
T ss_pred ccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCcC-Chh
Confidence 65421 1 11111 355556666666655432 4566667777777777777764 244
Q ss_pred HhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233 153 VFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194 (207)
Q Consensus 153 ~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~ 194 (207)
.+..+++|+.|++++|.+. .+|.. +..+++|+.|+++
T Consensus 236 ~~~~l~~L~~L~L~~N~l~-~lp~~----l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 236 SLSFLPTLRELHLDNNKLS-RVPAG----LPDLKLLQVVYLH 272 (332)
T ss_dssp GGGGCTTCCEEECCSSCCC-BCCTT----GGGCTTCCEEECC
T ss_pred HhhCCCCCCEEECCCCcCe-ecChh----hhcCccCCEEECC
Confidence 5667777777777777766 55553 4567777777665
No 81
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.68 E-value=2.7e-16 Score=123.06 Aligned_cols=169 Identities=21% Similarity=0.222 Sum_probs=107.9
Q ss_pred CCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCccCc-c-CCccCCCCCEEEeecCccccccCCccccCCcEEecCCC
Q psy10233 21 LNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKI-E-NLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHN 96 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~-~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~ 96 (207)
..+.+++++|.++.+ ..++++++|+.|++++|.+..+ + .+..+++|++|++++|.++.++.-. .++|++|++++|
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~L~~L~l~~n 133 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL-PSSLVELRIHDN 133 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSC-CTTCCEEECCSS
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccc-cccCCEEECCCC
Confidence 345566666666543 3467777777777777777765 2 3667777777777777776554311 167777777777
Q ss_pred ccccccC--CCCCCCCcEEEcCCCccCCccc-cccCCCC--------------------CCccEEEccCCCCCChhhHHH
Q psy10233 97 FIEKIEN--LSCLPVLRTLHLSHNRLKTIED-IEHLKDC--------------------PLLSIVDVSHNQIEDEEVIEV 153 (207)
Q Consensus 97 ~~~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~~--------------------~~L~~L~l~~n~l~~~~~~~~ 153 (207)
.+..++. +..+++|+.|++++|.++..+. +..+..+ ++|+.|++++|.+++. .+..
T Consensus 134 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~-~~~~ 212 (332)
T 2ft3_A 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI-ELED 212 (332)
T ss_dssp CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC-CTTS
T ss_pred ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCcc-CHHH
Confidence 7776642 6677788888888887753111 1122221 3566666666666654 2455
Q ss_pred hccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 154 FGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 154 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
+..+++|+.|++++|.+.+..+.. +..+++|+.|+++.
T Consensus 213 l~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQIRMIENGS----LSFLPTLRELHLDN 250 (332)
T ss_dssp STTCTTCSCCBCCSSCCCCCCTTG----GGGCTTCCEEECCS
T ss_pred hcCCCCCCEEECCCCcCCcCChhH----hhCCCCCCEEECCC
Confidence 667778888888888777544433 56778888777754
No 82
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=9.7e-16 Score=124.98 Aligned_cols=139 Identities=20% Similarity=0.287 Sum_probs=69.8
Q ss_pred CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc
Q psy10233 22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101 (207)
Q Consensus 22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~ 101 (207)
.+.++++.|.++.++ ++.+++|+.|++++|.+..++ ++.+++|++|++++|.++.++ +..+++|++|++++|.++.+
T Consensus 66 L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l 142 (457)
T 3bz5_A 66 LTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEI 142 (457)
T ss_dssp CSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCC
T ss_pred CCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCcccee
Confidence 445666666665543 555666666666666555543 455555555555555554432 44444444444444444322
Q ss_pred c---------------------CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCC
Q psy10233 102 E---------------------NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPEL 160 (207)
Q Consensus 102 ~---------------------~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L 160 (207)
+ .+..+++|+.|++++|.+++++ +..+++|+.|++++|.+++. .++.+++|
T Consensus 143 ~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~N~l~~~----~l~~l~~L 214 (457)
T 3bz5_A 143 DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITKL----DLNQNIQL 214 (457)
T ss_dssp CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC----CTTCTTCCEEECCSSCCSCC----CCTTCTTC
T ss_pred ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec----cccCCCCCEEECcCCcCCee----ccccCCCC
Confidence 1 2334455556666666555532 34444555555555555442 13444455
Q ss_pred cEEEcCCCccc
Q psy10233 161 RVLTLSHNPCV 171 (207)
Q Consensus 161 ~~l~l~~n~~~ 171 (207)
+.|++++|.+.
T Consensus 215 ~~L~Ls~N~l~ 225 (457)
T 3bz5_A 215 TFLDCSSNKLT 225 (457)
T ss_dssp SEEECCSSCCS
T ss_pred CEEECcCCccc
Confidence 55555555444
No 83
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.4e-16 Score=112.88 Aligned_cols=137 Identities=23% Similarity=0.304 Sum_probs=114.6
Q ss_pred cCCCCCEEEeecCccc--cccC-CccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEE
Q psy10233 62 AQTEMRSIYMHHNLVK--VMEN-LSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV 138 (207)
Q Consensus 62 ~l~~L~~L~l~~n~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L 138 (207)
..++|++|++++|.++ .++. +..+++|+.|++++|.++.++.+..+++|+.|++++|.+++. .+..+..+++|+.|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence 3478999999999997 5554 588999999999999998887788899999999999999884 22356668999999
Q ss_pred EccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcccCHHh
Q psy10233 139 DVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKD 200 (207)
Q Consensus 139 ~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~ 200 (207)
++++|.+++...+..+..+++|+.|++++|++. .++......+..+++|++|++..+...+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhh
Confidence 999999998544477889999999999999987 4555544568899999999998766544
No 84
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.68 E-value=4.9e-16 Score=127.16 Aligned_cols=166 Identities=19% Similarity=0.211 Sum_probs=137.8
Q ss_pred CeEEeecCCCcCccCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccc--cCCccccCCcEEecCCCcc
Q psy10233 23 DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINLSHNFI 98 (207)
Q Consensus 23 ~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~~~~ 98 (207)
..+.++.++++.++. .-.++++.|++++|.+..++ .|..+++|++|++++|.++.+ ..+..+++|++|++++|.+
T Consensus 14 ~~v~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 14 RAVLCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TEEECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 356777777765543 12368999999999999873 489999999999999999765 3588999999999999999
Q ss_pred cccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhh
Q psy10233 99 EKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN 176 (207)
Q Consensus 99 ~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 176 (207)
+.++ .+..+++|+.|++++|.+..... ..+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+.+..+.
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYI-SHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCTTCCEE-CTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCCh-hHccccccCCEEECCCCcccee-ChhhccCCCCCCEEECCCCcCcccChh
Confidence 8885 36789999999999999987544 6788999999999999999875 366788999999999999998754433
Q ss_pred HHHHHHHhCCcceeccCcc
Q psy10233 177 YRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 177 ~~~~~~~~~~~L~~L~~~~ 195 (207)
.+..+++|+.|++..
T Consensus 171 ----~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 171 ----ALSHLHGLIVLRLRH 185 (477)
T ss_dssp ----HHTTCTTCCEEEEES
T ss_pred ----HhcccCCCcEEeCCC
Confidence 478899999988764
No 85
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.68 E-value=5.8e-16 Score=130.13 Aligned_cols=82 Identities=22% Similarity=0.314 Sum_probs=38.6
Q ss_pred CCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhC
Q psy10233 106 CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLC 185 (207)
Q Consensus 106 ~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~ 185 (207)
.+++|+.|++++|.+++.++ ..+..+++|+.|++++|.+++. .+..+..++.| .|++++|.+.+..|.. +..+
T Consensus 474 ~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L-~L~L~~N~l~~~~~~~----~~~l 546 (606)
T 3t6q_A 474 TLGRLEILVLSFCDLSSIDQ-HAFTSLKMMNHVDLSHNRLTSS-SIEALSHLKGI-YLNLASNHISIILPSL----LPIL 546 (606)
T ss_dssp GCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCGG-GGGGGTTCCSC-EEECCSSCCCCCCGGG----HHHH
T ss_pred cCCCccEEECCCCccCccCh-hhhccccCCCEEECCCCccCcC-ChhHhCccccc-EEECcCCcccccCHhh----cccC
Confidence 33444444444444443222 3344455555555555555543 34444555555 5555555555433332 3344
Q ss_pred CcceeccCc
Q psy10233 186 VNLRHLDDY 194 (207)
Q Consensus 186 ~~L~~L~~~ 194 (207)
++|+.|++.
T Consensus 547 ~~L~~L~l~ 555 (606)
T 3t6q_A 547 SQQRTINLR 555 (606)
T ss_dssp HTSSEEECT
T ss_pred CCCCEEeCC
Confidence 555555544
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=8.4e-17 Score=125.00 Aligned_cols=165 Identities=18% Similarity=0.154 Sum_probs=103.4
Q ss_pred CCCeEEeecCCCcCc-cCccCC-----CCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccc----ccCC--cccc
Q psy10233 21 LNDVLYLHFKGYTVI-ENLEEY-----TGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKV----MENL--SHMQ 86 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~-~~l~~l-----~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~----~~~~--~~~~ 86 (207)
..+.++++.|.++.. ..++.+ ++|++|++++|.+...+ .+..+++|++|++++|.+.. ++.+ ..++
T Consensus 122 ~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 201 (312)
T 1wwl_A 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201 (312)
T ss_dssp CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT
T ss_pred CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCC
Confidence 345567777776543 233343 67777777777777664 36677777777777776432 2222 5667
Q ss_pred CCcEEecCCCccccccC-----CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCc
Q psy10233 87 LLDTINLSHNFIEKIEN-----LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELR 161 (207)
Q Consensus 87 ~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 161 (207)
+|++|++++|.++.++. +..+++|+.|++++|.+++..+...+..+++|+.|++++|.++. ++..+. ++|+
T Consensus 202 ~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~--~~L~ 277 (312)
T 1wwl_A 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKGLP--AKLS 277 (312)
T ss_dssp TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS--CCSSCC--SEEE
T ss_pred CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh--hhhhcc--CCce
Confidence 77777777777764321 23456777777777777664433445556777777777777764 344433 6777
Q ss_pred EEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 162 VLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 162 ~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
.|++++|.+.+. |. +..+++|+.|++.+
T Consensus 278 ~L~Ls~N~l~~~-p~-----~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 278 VLDLSYNRLDRN-PS-----PDELPQVGNLSLKG 305 (312)
T ss_dssp EEECCSSCCCSC-CC-----TTTSCEEEEEECTT
T ss_pred EEECCCCCCCCC-hh-----HhhCCCCCEEeccC
Confidence 777777777643 43 45667777776654
No 87
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=7.8e-16 Score=114.45 Aligned_cols=145 Identities=15% Similarity=0.170 Sum_probs=121.5
Q ss_pred CCCEEEeecCCccCccCCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccccccC--CCCCCCCcEEEcCCC
Q psy10233 43 GLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHN 118 (207)
Q Consensus 43 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n 118 (207)
.-+.++.+++.+..+|.-. .++|++|++++|.++.+. .+..+++|++|++++|.++.++. +..+++|+.|++++|
T Consensus 20 s~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3567899999998887521 388999999999997663 48899999999999999988853 678999999999999
Q ss_pred ccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 119 RLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 119 ~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
.++.++. ..+..+++|+.|++++|.++. ++..+..+++|+.|++++|.+.+..+. .+..+++|+.|++..
T Consensus 99 ~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 99 QLTVLPS-AVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPHG----AFDRLSSLTHAYLFG 168 (229)
T ss_dssp CCCCCCT-TTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECTT
T ss_pred cCCccCh-hHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccCHH----HHhCCCCCCEEEeeC
Confidence 9988655 567889999999999999996 577778999999999999998844333 367889999888764
No 88
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.67 E-value=8.4e-16 Score=126.99 Aligned_cols=164 Identities=17% Similarity=0.195 Sum_probs=104.6
Q ss_pred CeEEeecCCCcCccCccCCCCCCEEEeecCCccCc--cCCccCCCCCEEEeecCcccccc----CCccccCCcEEecCCC
Q psy10233 23 DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLVKVME----NLSHMQLLDTINLSHN 96 (207)
Q Consensus 23 ~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~L~~L~l~~~ 96 (207)
+.++++.+++........+++|+.|++++|.+... ..+..+++|++|++++|.++.++ .+..+++|++|++++|
T Consensus 305 ~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred eEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence 34555555554333335677788888888877762 34677777888888887776432 2567777888888887
Q ss_pred cccc-cc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccc
Q psy10233 97 FIEK-IE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGK 173 (207)
Q Consensus 97 ~~~~-~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 173 (207)
.+.. +| .+..+++|+.|++++|.+++... ..+. ++|+.|++++|.++. ++..+..+++|+.|++++|.+. .
T Consensus 385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~--~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~L~~N~l~-~ 458 (520)
T 2z7x_B 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF-RCLP--PRIKVLDLHSNKIKS--IPKQVVKLEALQELNVASNQLK-S 458 (520)
T ss_dssp CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG-GSCC--TTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCC-C
T ss_pred cCCcccccchhccCccCCEEECcCCCCCcchh-hhhc--ccCCEEECCCCcccc--cchhhhcCCCCCEEECCCCcCC-c
Confidence 7766 54 35566777777777777654222 1221 567777777777764 4554456777777777777766 4
Q ss_pred hhhHHHHHHHhCCcceeccCcc
Q psy10233 174 IKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 174 ~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
+|.. .+..+++|+.|++..
T Consensus 459 l~~~---~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 459 VPDG---IFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCTT---TTTTCTTCCEEECCS
T ss_pred cCHH---HhccCCcccEEECcC
Confidence 5543 245667777666653
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=1.3e-16 Score=131.14 Aligned_cols=146 Identities=18% Similarity=0.326 Sum_probs=104.6
Q ss_pred CCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCccccc--cCCc-cccCCcEEecCCCccccccCCCCCCCCcEEE
Q psy10233 40 EYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVM--ENLS-HMQLLDTINLSHNFIEKIENLSCLPVLRTLH 114 (207)
Q Consensus 40 ~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~--~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 114 (207)
.+++|+.|++++|.+...+ .+..+++|++|++++|.++.. ..+. .+++|+.|++++|.++.++....+++|+.|+
T Consensus 118 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~ 197 (487)
T 3oja_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLD 197 (487)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEE
T ss_pred ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEE
Confidence 4567777778877777762 467778888888888877643 2343 6788888888888887776666678888888
Q ss_pred cCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc-cchhhHHHHHHHhCCcceeccC
Q psy10233 115 LSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV-GKIKNYRRMFINLCVNLRHLDD 193 (207)
Q Consensus 115 l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~~~~~L~~L~~ 193 (207)
+++|.++++++ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|. .+..++.|+.++.
T Consensus 198 Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~----~~~~l~~L~~l~~ 269 (487)
T 3oja_A 198 LSSNKLAFMGP--EFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRD----FFSKNQRVQTVAK 269 (487)
T ss_dssp CCSSCCCEECG--GGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBCHHHHHH----HHTTCHHHHHHHH
T ss_pred CCCCCCCCCCH--hHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCcCcchHH----HHHhCCCCcEEec
Confidence 88888877544 46677888888888888876 5666777788888888888876 33333 3455555555443
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.67 E-value=1.1e-15 Score=127.54 Aligned_cols=141 Identities=20% Similarity=0.264 Sum_probs=68.8
Q ss_pred CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc
Q psy10233 22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101 (207)
Q Consensus 22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~ 101 (207)
...++++.|.++.++ ..+++|+.|++++|.+..+|.+.. +|++|++++|.++.++. .+++|+.|++++|.++.+
T Consensus 82 L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l 155 (571)
T 3cvr_A 82 ITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTML 155 (571)
T ss_dssp CSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCC
T ss_pred CCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcC
Confidence 344555555555444 345566666666666555544322 55555555555544433 344455555555544444
Q ss_pred cCCCCCCCCcEEEcCCCccCCccccccCCCCCCc---------------------------cEEEccCCCCCChhhHHHh
Q psy10233 102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLL---------------------------SIVDVSHNQIEDEEVIEVF 154 (207)
Q Consensus 102 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L---------------------------~~L~l~~n~l~~~~~~~~~ 154 (207)
|. .+++|+.|++++|.+++++. +. ++| +.|++++|.++. +|..+
T Consensus 156 p~--~l~~L~~L~Ls~N~L~~lp~---l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~--lp~~l 226 (571)
T 3cvr_A 156 PE--LPTSLEVLSVRNNQLTFLPE---LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH--IPENI 226 (571)
T ss_dssp CC--CCTTCCEEECCSSCCSCCCC---CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCC--CCGGG
T ss_pred CC--cCCCcCEEECCCCCCCCcch---hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCccee--cCHHH
Confidence 33 23444444444444443222 11 333 555555555554 34434
Q ss_pred ccCCCCcEEEcCCCccccchhhH
Q psy10233 155 GAMPELRVLTLSHNPCVGKIKNY 177 (207)
Q Consensus 155 ~~~~~L~~l~l~~n~~~~~~~~~ 177 (207)
..+++|+.|++++|++.+.+|..
T Consensus 227 ~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp GGSCTTEEEECCSSSCCHHHHHH
T ss_pred hcCCCCCEEEeeCCcCCCcCHHH
Confidence 44555555555555555555543
No 91
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=1.2e-15 Score=127.12 Aligned_cols=165 Identities=19% Similarity=0.195 Sum_probs=133.0
Q ss_pred eEEeecCCCcCccCccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccc
Q psy10233 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIE 99 (207)
Q Consensus 24 ~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~ 99 (207)
.++.+..+++.++. .-.+.++.|++++|.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+.
T Consensus 11 ~~~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 11 TYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp EEECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEEeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC
Confidence 45666666765543 11357999999999999874 5889999999999999987664 4889999999999999998
Q ss_pred ccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhH
Q psy10233 100 KIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNY 177 (207)
Q Consensus 100 ~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 177 (207)
.++ .+..+++|+.|++++|.++.++. ..+..+++|++|++++|.++...+|..++.+++|+.|++++|.+.+..+..
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred ccCHhhhcCccccccccccccccccCCC-ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH
Confidence 774 58889999999999999988655 458899999999999999987556788899999999999999988655543
Q ss_pred HHHHHHhCCcc----eeccCc
Q psy10233 178 RRMFINLCVNL----RHLDDY 194 (207)
Q Consensus 178 ~~~~~~~~~~L----~~L~~~ 194 (207)
+..+.+| ..+++.
T Consensus 169 ----~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 169 ----LRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ----GHHHHTCTTCCCEEECT
T ss_pred ----ccchhccchhhhhcccC
Confidence 3444555 455554
No 92
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.66 E-value=1.2e-15 Score=129.90 Aligned_cols=167 Identities=21% Similarity=0.285 Sum_probs=138.0
Q ss_pred CeEEeecCCCcCcc-CccCCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCc
Q psy10233 23 DVLYLHFKGYTVIE-NLEEYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNF 97 (207)
Q Consensus 23 ~~l~l~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~ 97 (207)
..++++.++++.++ .+. ++++.|++++|.+..++ .+..+++|++|++++|.++... .+..+++|++|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 46788888887655 343 78999999999999875 3889999999999999987653 37889999999999999
Q ss_pred cccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh
Q psy10233 98 IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK 175 (207)
Q Consensus 98 ~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 175 (207)
+..+|. +..+++|++|++++|.++++++ ..+..+++|++|++++|.+++. .+..++.+++|+.|++++|.+.+..+
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCS-CTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred cCccChhhhccCCCCCEEECCCCccCccCh-hHccccCCCCEEECCCCccccc-CchhhcccccCCEEEccCCcccccCH
Confidence 988863 8889999999999999988654 5788999999999999999875 46667889999999999999886555
Q ss_pred hHHHHHHHhCCcceeccCcc
Q psy10233 176 NYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 176 ~~~~~~~~~~~~L~~L~~~~ 195 (207)
.... ...+++|+.|+++.
T Consensus 163 ~~~~--~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 163 EELD--IFANSSLKKLELSS 180 (680)
T ss_dssp HHHG--GGTTCEESEEECTT
T ss_pred HHhh--ccccccccEEECCC
Confidence 4311 23568999998865
No 93
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=1.6e-15 Score=109.86 Aligned_cols=120 Identities=16% Similarity=0.251 Sum_probs=54.9
Q ss_pred eEEeecCCCcCccC-ccCCCCCCEEEeecCCccCccC---CccCCCCCEEEeecCccccc--cCCccccCCcEEecCCCc
Q psy10233 24 VLYLHFKGYTVIEN-LEEYTGLKCLWLENNGISKIEN---LDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINLSHNF 97 (207)
Q Consensus 24 ~l~l~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~---~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~~~ 97 (207)
.++++.++++.++. +. .+++.|++++|.+..++. +..+++|++|++++|.++.+ ..+..+++|++|++++|.
T Consensus 12 ~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 34455555443332 21 245555555555554421 44455555555555555433 124445555555555555
Q ss_pred ccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCC
Q psy10233 98 IEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE 146 (207)
Q Consensus 98 ~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~ 146 (207)
++.++ .+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCcc
Confidence 44442 14444455555555554444322 33444444444444444444
No 94
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.65 E-value=3.9e-18 Score=124.17 Aligned_cols=142 Identities=27% Similarity=0.385 Sum_probs=96.5
Q ss_pred CccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccC-CCCCCCCcEEEcCCCccCCccccccCCCCCCccEE
Q psy10233 60 LDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIEN-LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV 138 (207)
Q Consensus 60 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L 138 (207)
+..+++|++|++++|.++.++.+..+++|++|++++|.++.+|. +..+++|+.|++++|.+++++ .+..+++|+.|
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~---~~~~l~~L~~L 120 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS---GIEKLVNLRVL 120 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH---HHHHHHHSSEE
T ss_pred HhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC---ccccCCCCCEE
Confidence 44555556666655555555555555666666666665555443 223356777777777766643 35566788888
Q ss_pred EccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh------hHHHHHHHhCCcceeccCcccCHHhhhhh
Q psy10233 139 DVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK------NYRRMFINLCVNLRHLDDYPVFDKDRKCA 204 (207)
Q Consensus 139 ~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~------~~~~~~~~~~~~L~~L~~~~~~~~~~~~~ 204 (207)
++++|.+++.+....+..+++|+.|++++|++.+.+| .+....+..+++|+.||...+...++..|
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~~~e~~~a 192 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQA 192 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGTTTTTTHH
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccCHHHHHHH
Confidence 8888888875434577889999999999998876554 34455688999999999988887776655
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=7.2e-17 Score=126.26 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=82.9
Q ss_pred ccCCCCCCEEEeecCCccC--cc-CCccCCCCCEEEeecCcccc--ccCCccccCCcEEecCCC-cccc--ccC-CCCCC
Q psy10233 38 LEEYTGLKCLWLENNGISK--IE-NLDAQTEMRSIYMHHNLVKV--MENLSHMQLLDTINLSHN-FIEK--IEN-LSCLP 108 (207)
Q Consensus 38 l~~l~~L~~L~l~~~~l~~--~~-~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~L~~L~l~~~-~~~~--~~~-~~~~~ 108 (207)
+.++++|+.|++++|.+.. ++ .+..+++|++|++++|.+.. +..+..+++|++|++++| .++. ++. +..++
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 3445556666666655543 22 24455666666666665532 123445566666666666 4442 222 44455
Q ss_pred CCcEEEcCCC-ccCCccccccCCCCC-CccEEEccCC--CCCChhhHHHhccCCCCcEEEcCCCc-cccchhhHHHHHHH
Q psy10233 109 VLRTLHLSHN-RLKTIEDIEHLKDCP-LLSIVDVSHN--QIEDEEVIEVFGAMPELRVLTLSHNP-CVGKIKNYRRMFIN 183 (207)
Q Consensus 109 ~L~~L~l~~n-~i~~~~~~~~l~~~~-~L~~L~l~~n--~l~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~ 183 (207)
+|+.|++++| .+++......+..++ +|+.|++++| .+++..++..+..+++|+.|++++|. +++..+.. +.
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~----l~ 244 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE----FF 244 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG----GG
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH----Hh
Confidence 6666666666 554422222345555 6666666666 44434455555666666666666666 44333332 45
Q ss_pred hCCcceeccCccc
Q psy10233 184 LCVNLRHLDDYPV 196 (207)
Q Consensus 184 ~~~~L~~L~~~~~ 196 (207)
.+++|++|+++.+
T Consensus 245 ~l~~L~~L~l~~~ 257 (336)
T 2ast_B 245 QLNYLQHLSLSRC 257 (336)
T ss_dssp GCTTCCEEECTTC
T ss_pred CCCCCCEeeCCCC
Confidence 5666666666554
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=3.9e-15 Score=124.12 Aligned_cols=125 Identities=14% Similarity=0.228 Sum_probs=85.3
Q ss_pred CeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccccc
Q psy10233 23 DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIE 102 (207)
Q Consensus 23 ~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 102 (207)
..++++.|.++.++. .+++|+.|++++|.+..+|. .+++|++|++++|.++.++.+. ++|+.|++++|.++.+|
T Consensus 123 ~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 123 KHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp CEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCC
T ss_pred CEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchh
Confidence 345555555544444 45666666666666666555 4567777777777776665543 77888888888887776
Q ss_pred CCCCCCCC-------cEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCC
Q psy10233 103 NLSCLPVL-------RTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP 158 (207)
Q Consensus 103 ~~~~~~~L-------~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 158 (207)
.+.. +| +.|++++|.++.++. .+..+++|+.|++++|.+++. .+..+..++
T Consensus 197 ~~~~--~L~~~~~~L~~L~Ls~N~l~~lp~--~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~ 254 (571)
T 3cvr_A 197 AVPV--RNHHSEETEIFFRCRENRITHIPE--NILSLDPTCTIILEDNPLSSR-IRESLSQQT 254 (571)
T ss_dssp CCC----------CCEEEECCSSCCCCCCG--GGGGSCTTEEEECCSSSCCHH-HHHHHHHHH
T ss_pred hHHH--hhhcccccceEEecCCCcceecCH--HHhcCCCCCEEEeeCCcCCCc-CHHHHHHhh
Confidence 6332 66 889999999887654 455589999999999999875 566665543
No 97
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=1.7e-16 Score=110.21 Aligned_cols=127 Identities=26% Similarity=0.319 Sum_probs=102.8
Q ss_pred CCCCCEEEeecCCcc--CccC-CccCCCCCEEEeecCccccccCCccccCCcEEecCCCcccc-ccC-CCCCCCCcEEEc
Q psy10233 41 YTGLKCLWLENNGIS--KIEN-LDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK-IEN-LSCLPVLRTLHL 115 (207)
Q Consensus 41 l~~L~~L~l~~~~l~--~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~-~~~~~~L~~L~l 115 (207)
.++++.|++++|.+. .++. +..+++|++|++++|.++.++.+..+++|++|++++|.++. +|. +..+++|+.|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 467888999999887 5554 67888999999999988777778888999999999998887 554 345789999999
Q ss_pred CCCccCCccccccCCCCCCccEEEccCCCCCChhh--HHHhccCCCCcEEEcCC
Q psy10233 116 SHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEV--IEVFGAMPELRVLTLSH 167 (207)
Q Consensus 116 ~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~L~~l~l~~ 167 (207)
++|.+++.+.+..+..+++|+.|++++|.+++... ...+..+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999886544578889999999999999887531 14778899999998763
No 98
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.65 E-value=5.7e-16 Score=134.99 Aligned_cols=157 Identities=16% Similarity=0.179 Sum_probs=102.2
Q ss_pred CCCCCCeEEeecCCCcCc--cCccCCCCCCEEEeecCCcc-Cc-c-CCccCCCCCEEEeecCccccc--cCCccccCCcE
Q psy10233 18 TPSLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGIS-KI-E-NLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDT 90 (207)
Q Consensus 18 ~~~~~~~l~l~~~~~~~~--~~l~~l~~L~~L~l~~~~l~-~~-~-~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~ 90 (207)
.|..++.+++++|.++.+ ..+.++++|+.|++++|... .+ + .+..+++|++|++++|.++.. ..+..+++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 344556677777777543 46777777777777777433 33 2 367777777777777777544 34677777777
Q ss_pred EecCCCccccc-c-C--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccC--CCCcEEE
Q psy10233 91 INLSHNFIEKI-E-N--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM--PELRVLT 164 (207)
Q Consensus 91 L~l~~~~~~~~-~-~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~~L~~l~ 164 (207)
|++++|.+... + . +..+++|+.|++++|.+++......+..+++|+.|++++|.++.. .+..+..+ ++|+.|+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~-~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV-CEHELEPLQGKTLSFFS 180 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC-CSGGGHHHHHCSSCCCE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee-CHHHcccccCCccceEE
Confidence 77777777642 2 2 666777777777777776654434567777777777777777653 23333333 5666777
Q ss_pred cCCCccccchh
Q psy10233 165 LSHNPCVGKIK 175 (207)
Q Consensus 165 l~~n~~~~~~~ 175 (207)
++.|.+.+..+
T Consensus 181 L~~n~l~~~~~ 191 (844)
T 3j0a_A 181 LAANSLYSRVS 191 (844)
T ss_dssp ECCSBSCCCCC
T ss_pred CCCCccccccc
Confidence 77776665444
No 99
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.65 E-value=1.4e-15 Score=132.56 Aligned_cols=153 Identities=17% Similarity=0.187 Sum_probs=128.0
Q ss_pred CeEEeecCCCcCccCccCCCCCCEEEeecCCccCc--cCCccCCCCCEEEeecCcc-ccc--cCCccccCCcEEecCCCc
Q psy10233 23 DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLV-KVM--ENLSHMQLLDTINLSHNF 97 (207)
Q Consensus 23 ~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~n~~-~~~--~~~~~~~~L~~L~l~~~~ 97 (207)
...+++.++++.+|. ..+++++|++++|.+..+ ..+..+++|++|++++|.. ..+ ..+..+++|++|++++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 357888888887776 568999999999999886 3589999999999999944 333 458999999999999999
Q ss_pred cccc-c-CCCCCCCCcEEEcCCCccCCc-cccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccch
Q psy10233 98 IEKI-E-NLSCLPVLRTLHLSHNRLKTI-EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKI 174 (207)
Q Consensus 98 ~~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 174 (207)
+..+ | .+..+++|+.|++++|.+++. +....+..+++|++|++++|.+++...+..++.+++|+.|++++|.+.+..
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 9877 4 588899999999999999863 332358899999999999999988644467899999999999999988766
Q ss_pred hhH
Q psy10233 175 KNY 177 (207)
Q Consensus 175 ~~~ 177 (207)
+..
T Consensus 165 ~~~ 167 (844)
T 3j0a_A 165 EHE 167 (844)
T ss_dssp SGG
T ss_pred HHH
Confidence 654
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=2.8e-16 Score=121.89 Aligned_cols=145 Identities=19% Similarity=0.161 Sum_probs=77.9
Q ss_pred CCCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcccc---c-c--CCccccCCcEEecCCCccccccC-----CCC
Q psy10233 40 EYTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLVKV---M-E--NLSHMQLLDTINLSHNFIEKIEN-----LSC 106 (207)
Q Consensus 40 ~l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~~---~-~--~~~~~~~L~~L~l~~~~~~~~~~-----~~~ 106 (207)
.+++|+.|++++|.+...+ .+..+++|++|++++|.+.. + . .+..+++|++|++++|.++.++. +..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 4555555555555555442 24555666666666665421 1 1 12345556666666665554322 234
Q ss_pred CCCCcEEEcCCCccCCccccccCCC---CCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHH
Q psy10233 107 LPVLRTLHLSHNRLKTIEDIEHLKD---CPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFIN 183 (207)
Q Consensus 107 ~~~L~~L~l~~n~i~~~~~~~~l~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 183 (207)
+++|+.|++++|.+++..+ ..+.. +++|+.|++++|.++. ++..+ .++|+.|++++|.+.+ +|. ..
T Consensus 223 l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~--~~~L~~L~Ls~N~l~~-~~~-----~~ 291 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVN-PSAPRCMWSSALNSLNLSFAGLEQ--VPKGL--PAKLRVLDLSSNRLNR-APQ-----PD 291 (310)
T ss_dssp TCCCSSEECTTSCCCCCCC-SCCSSCCCCTTCCCEECCSSCCCS--CCSCC--CSCCSCEECCSCCCCS-CCC-----TT
T ss_pred CCCCCEEECCCCCCCccch-hhHHhccCcCcCCEEECCCCCCCc--hhhhh--cCCCCEEECCCCcCCC-Cch-----hh
Confidence 4666666666666665422 12222 3567777777777664 34333 2567777777777663 222 24
Q ss_pred hCCcceeccCcc
Q psy10233 184 LCVNLRHLDDYP 195 (207)
Q Consensus 184 ~~~~L~~L~~~~ 195 (207)
.+++|+.|+++.
T Consensus 292 ~l~~L~~L~L~~ 303 (310)
T 4glp_A 292 ELPEVDNLTLDG 303 (310)
T ss_dssp SCCCCSCEECSS
T ss_pred hCCCccEEECcC
Confidence 556666666543
No 101
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.64 E-value=6.3e-15 Score=120.07 Aligned_cols=138 Identities=20% Similarity=0.307 Sum_probs=68.9
Q ss_pred CCeEEeecCCCcCccCccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc
Q psy10233 22 NDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101 (207)
Q Consensus 22 ~~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~ 101 (207)
.+.+++++|.++.+++++++++|+.|++++|.+..+|.. .++|++|++++|.++.++.++.+++|+.|++++|.+..+
T Consensus 133 L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l 210 (454)
T 1jl5_A 133 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL 210 (454)
T ss_dssp CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC
T ss_pred CCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcC
Confidence 344555555554444555555555555555555544432 135555555555555444555555555555555555444
Q ss_pred cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccc
Q psy10233 102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCV 171 (207)
Q Consensus 102 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~ 171 (207)
|... ++|+.|++++|.++.++ .+..+++|+.|++++|.+++. +. .+++|+.|++++|.+.
T Consensus 211 ~~~~--~~L~~L~l~~n~l~~lp---~~~~l~~L~~L~l~~N~l~~l--~~---~~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 211 PDLP--LSLESIVAGNNILEELP---ELQNLPFLTTIYADNNLLKTL--PD---LPPSLEALNVRDNYLT 270 (454)
T ss_dssp CCCC--TTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSSC--CS---CCTTCCEEECCSSCCS
T ss_pred CCCc--CcccEEECcCCcCCccc---ccCCCCCCCEEECCCCcCCcc--cc---cccccCEEECCCCccc
Confidence 3322 35555555555554332 244555566666666655542 21 1244555555555444
No 102
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.64 E-value=9.8e-16 Score=129.71 Aligned_cols=152 Identities=18% Similarity=0.304 Sum_probs=92.5
Q ss_pred CCCeEEeecCCCcCccC---ccCCCCCCEEEeecCCcc-CccCCccCCCCCEEEeecCcccccc-CCccccC-CcEEecC
Q psy10233 21 LNDVLYLHFKGYTVIEN---LEEYTGLKCLWLENNGIS-KIENLDAQTEMRSIYMHHNLVKVME-NLSHMQL-LDTINLS 94 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~~~---l~~l~~L~~L~l~~~~l~-~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~-L~~L~l~ 94 (207)
..+.++++.|.++.++. ++++++|+.|++++|.+. .+|.+..+++|++|++++|.++.++ .+..+++ |++|+++
T Consensus 306 ~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp TCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECC
T ss_pred CCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEcc
Confidence 34566777777665443 677777777777777777 5566666777777777777665443 3666776 7777777
Q ss_pred CCccccccC-CCCC--CCCcEEEcCCCccCCccccccCC-------CCCCccEEEccCCCCCChhhHHHhccCCCCcEEE
Q psy10233 95 HNFIEKIEN-LSCL--PVLRTLHLSHNRLKTIEDIEHLK-------DCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLT 164 (207)
Q Consensus 95 ~~~~~~~~~-~~~~--~~L~~L~l~~n~i~~~~~~~~l~-------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~ 164 (207)
+|.++.+|. +... ++|+.|++++|.+++..+ ..+. .+++|+.|++++|.++.. ....+..+++|+.|+
T Consensus 386 ~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG-KNFDPLDPTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSIN 463 (636)
T ss_dssp SSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTT-CSSCTTCSSCCCCCCEEEEECCSSCCCSC-CTHHHHTTCCCSEEE
T ss_pred CCcCcccchhhhhcccCccCEEECcCCcCCCcch-hhhcccccccccCCCCCEEECcCCccCcC-CHHHHccCCCCCEEE
Confidence 777766553 2222 356777777776655322 2333 445666666666666643 123344456666666
Q ss_pred cCCCccccchh
Q psy10233 165 LSHNPCVGKIK 175 (207)
Q Consensus 165 l~~n~~~~~~~ 175 (207)
+++|.+. .+|
T Consensus 464 Ls~N~l~-~i~ 473 (636)
T 4eco_A 464 LMGNMLT-EIP 473 (636)
T ss_dssp CCSSCCS-BCC
T ss_pred CCCCCCC-CcC
Confidence 6666554 444
No 103
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.63 E-value=4.7e-15 Score=123.74 Aligned_cols=133 Identities=18% Similarity=0.262 Sum_probs=62.4
Q ss_pred cCCCCCCEEEeecCCccCc--cCCccCCCCCEEEeecCcccccc----CCccccCCcEEecCCCcccc-cc--CCCCCC-
Q psy10233 39 EEYTGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLVKVME----NLSHMQLLDTINLSHNFIEK-IE--NLSCLP- 108 (207)
Q Consensus 39 ~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~L~~L~l~~~~~~~-~~--~~~~~~- 108 (207)
..+++|+.|++++|.+... ..+..+++|++|++++|.++.++ .+..+++|++|++++|.+.. +| .+..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 3445555555555555442 22444555555555555544322 24444555555555555443 32 133334
Q ss_pred ---------------------CCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHH-HhccCCCCcEEEcC
Q psy10233 109 ---------------------VLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE-VFGAMPELRVLTLS 166 (207)
Q Consensus 109 ---------------------~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~L~~l~l~ 166 (207)
+|+.|++++|.++.++. .+..+++|+.|++++|.++.. +. .+..+++|+.++++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~--~~~~l~~L~~L~L~~N~l~~l--~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPK--DVTHLQALQELNVASNQLKSV--PDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCT--TTTSSCCCSEEECCSSCCCCC--CTTSTTTCTTCCCEECC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccCh--hhcCCCCCCEEECCCCCCCCC--CHHHHhcCCCCCEEEec
Confidence 45555555555444332 222445555555555555542 22 24455555555555
Q ss_pred CCccccchh
Q psy10233 167 HNPCVGKIK 175 (207)
Q Consensus 167 ~n~~~~~~~ 175 (207)
+|++.++.+
T Consensus 506 ~N~~~c~c~ 514 (562)
T 3a79_B 506 DNPWDCTCP 514 (562)
T ss_dssp SCCBCCCHH
T ss_pred CCCcCCCcc
Confidence 555554443
No 104
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=4.4e-16 Score=135.42 Aligned_cols=124 Identities=20% Similarity=0.224 Sum_probs=77.6
Q ss_pred CCCeEEeecCCCc--CccCccCCCCCCEEEeecCC-ccC--ccC-C-------ccCCCCCEEEeecCccccccC---Ccc
Q psy10233 21 LNDVLYLHFKGYT--VIENLEEYTGLKCLWLENNG-ISK--IEN-L-------DAQTEMRSIYMHHNLVKVMEN---LSH 84 (207)
Q Consensus 21 ~~~~l~l~~~~~~--~~~~l~~l~~L~~L~l~~~~-l~~--~~~-~-------~~l~~L~~L~l~~n~~~~~~~---~~~ 84 (207)
..+.++++.|.+. .+..++++++|+.|++++|. +.. +|. + ..+++|++|++++|.++.++. +..
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~ 571 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK 571 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTT
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhc
Confidence 4556788887752 34567778888888888876 554 331 2 234477777777776665544 666
Q ss_pred ccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCC-ccEEEccCCCCC
Q psy10233 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPL-LSIVDVSHNQIE 146 (207)
Q Consensus 85 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~-L~~L~l~~n~l~ 146 (207)
+++|+.|++++|.+..+|.+..+++|+.|++++|.++.++. .+..+++ |+.|++++|.++
T Consensus 572 L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~--~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 572 MVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPE--DFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp CTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCT--TSCEECTTCCEEECCSSCCC
T ss_pred CCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchH--HHhhccccCCEEECcCCCCC
Confidence 67777777777766655666666666666666666654332 3555555 666666666555
No 105
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.63 E-value=3.7e-15 Score=123.16 Aligned_cols=151 Identities=22% Similarity=0.261 Sum_probs=125.9
Q ss_pred CCCCCeEEeecCCCcC--ccCccCCCCCCEEEeecCCccCcc----CCccCCCCCEEEeecCcccc-cc--CCccccCCc
Q psy10233 19 PSLNDVLYLHFKGYTV--IENLEEYTGLKCLWLENNGISKIE----NLDAQTEMRSIYMHHNLVKV-ME--NLSHMQLLD 89 (207)
Q Consensus 19 ~~~~~~l~l~~~~~~~--~~~l~~l~~L~~L~l~~~~l~~~~----~~~~l~~L~~L~l~~n~~~~-~~--~~~~~~~L~ 89 (207)
....+.++++.|.+.. +..++++++|+.|++++|.+..++ .+..+++|++|++++|.+.. ++ .+..+++|+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 3455678999999865 678899999999999999999753 27889999999999999975 54 377889999
Q ss_pred EEecCCCccccc-c-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHH-HhccCCCCcEEEcC
Q psy10233 90 TINLSHNFIEKI-E-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE-VFGAMPELRVLTLS 166 (207)
Q Consensus 90 ~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~L~~l~l~ 166 (207)
+|++++|.++.. + .+. ++|+.|++++|.++.++. .+..+++|+.|++++|.++.. +. .+..+++|+.|+++
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~--~~~~l~~L~~L~L~~N~l~~l--~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPK--QVVKLEALQELNVASNQLKSV--PDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCG--GGGGCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECC
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCcccccch--hhhcCCCCCEEECCCCcCCcc--CHHHhccCCcccEEECc
Confidence 999999998643 3 232 799999999999987655 455899999999999999974 44 47889999999999
Q ss_pred CCccccchh
Q psy10233 167 HNPCVGKIK 175 (207)
Q Consensus 167 ~n~~~~~~~ 175 (207)
+|++.++.+
T Consensus 477 ~N~~~c~c~ 485 (520)
T 2z7x_B 477 TNPWDCSCP 485 (520)
T ss_dssp SSCBCCCHH
T ss_pred CCCCcccCC
Confidence 999988766
No 106
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=9.2e-15 Score=104.28 Aligned_cols=129 Identities=16% Similarity=0.280 Sum_probs=88.8
Q ss_pred CCEEEeecCCccCccCCccCCCCCEEEeecCccccccC--CccccCCcEEecCCCccccccC--CCCCCCCcEEEcCCCc
Q psy10233 44 LKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNR 119 (207)
Q Consensus 44 L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~ 119 (207)
.+.++++++.+..+|. .-.++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|+.|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 3566666666666653 112567777777777655432 5667777777777777776642 5667788888888887
Q ss_pred cCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh
Q psy10233 120 LKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK 175 (207)
Q Consensus 120 i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 175 (207)
+++++. ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|++.+..+
T Consensus 88 l~~~~~-~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLPN-GVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCT-TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCH-HHhhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCCeeccCc
Confidence 776544 4567777888888888888764 24455677888888888888877665
No 107
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=1.1e-16 Score=125.26 Aligned_cols=181 Identities=17% Similarity=0.166 Sum_probs=113.7
Q ss_pred hcCCccCCCCCCeEEeecCCCcCccCccCC--CCCCEEEeecCCccCc-cCCccCCCCCEEEeecCcccc--c-cCCccc
Q psy10233 12 DNKLYLTPSLNDVLYLHFKGYTVIENLEEY--TGLKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKV--M-ENLSHM 85 (207)
Q Consensus 12 ~~~~~~~~~~~~~l~l~~~~~~~~~~l~~l--~~L~~L~l~~~~l~~~-~~~~~l~~L~~L~l~~n~~~~--~-~~~~~~ 85 (207)
|.++..+|...+.++++.+.+. ...+..+ +.++.+++++|.+... +.+..+++|++|++++|.+.. + ..+..+
T Consensus 39 W~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 117 (336)
T 2ast_B 39 WYRLASDESLWQTLDLTGKNLH-PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 117 (336)
T ss_dssp HHHHHTCSTTSSEEECTTCBCC-HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTB
T ss_pred HHHHhcCchhheeeccccccCC-HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhC
Confidence 4555555666666777766654 3334444 6777777777777665 345567777777777776642 2 235667
Q ss_pred cCCcEEecCCCccccc--cCCCCCCCCcEEEcCCC-ccCCccccccCCCCCCccEEEccCC-CCCChhhHHHhccCC-CC
Q psy10233 86 QLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHN-RLKTIEDIEHLKDCPLLSIVDVSHN-QIEDEEVIEVFGAMP-EL 160 (207)
Q Consensus 86 ~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n-~i~~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~-~L 160 (207)
++|++|++++|.++.. ..+..+++|+.|++++| .+++......+..+++|++|++++| .+++..++..+..++ +|
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 7777777777766532 23555677777777777 4554222234556677777777777 776654566667777 77
Q ss_pred cEEEcCCCc--cc-cchhhHHHHHHHhCCcceeccCcccC
Q psy10233 161 RVLTLSHNP--CV-GKIKNYRRMFINLCVNLRHLDDYPVF 197 (207)
Q Consensus 161 ~~l~l~~n~--~~-~~~~~~~~~~~~~~~~L~~L~~~~~~ 197 (207)
+.|++++|. +. +.++. .+..+++|+.|+++.+.
T Consensus 198 ~~L~l~~~~~~~~~~~l~~----~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLST----LVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp CEEECCSCGGGSCHHHHHH----HHHHCTTCSEEECTTCT
T ss_pred CEEEeCCCcccCCHHHHHH----HHhhCCCCCEEeCCCCC
Confidence 777777773 33 22232 45667777777776543
No 108
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.62 E-value=8.5e-15 Score=122.19 Aligned_cols=127 Identities=17% Similarity=0.241 Sum_probs=90.2
Q ss_pred CCCCeEEeecCCCcC--ccCccCCCCCCEEEeecCCccCcc----CCccCCCCCEEEeecCcccc-ccC--Ccc------
Q psy10233 20 SLNDVLYLHFKGYTV--IENLEEYTGLKCLWLENNGISKIE----NLDAQTEMRSIYMHHNLVKV-MEN--LSH------ 84 (207)
Q Consensus 20 ~~~~~l~l~~~~~~~--~~~l~~l~~L~~L~l~~~~l~~~~----~~~~l~~L~~L~l~~n~~~~-~~~--~~~------ 84 (207)
...+.++++.|.++. +..+.++++|+.|++++|.+..++ .+..+++|++|++++|.++. ++. +..
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 344566777777653 455667777777777777776542 25666777777777766643 221 222
Q ss_pred ---------------c-cCCcEEecCCCcccccc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCC
Q psy10233 85 ---------------M-QLLDTINLSHNFIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147 (207)
Q Consensus 85 ---------------~-~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~ 147 (207)
+ ++|++|++++|.++.+| .+..+++|+.|++++|.+++++. ..+..+++|+.+++++|.+..
T Consensus 433 L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD-GVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp EECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCT-TSTTTCTTCCCEECCSCCBCC
T ss_pred EECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCH-HHHhcCCCCCEEEecCCCcCC
Confidence 2 56777778777777775 46688999999999999998665 358889999999999999986
No 109
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.62 E-value=1.7e-14 Score=117.56 Aligned_cols=120 Identities=24% Similarity=0.318 Sum_probs=67.0
Q ss_pred CCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCC
Q psy10233 43 GLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKT 122 (207)
Q Consensus 43 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 122 (207)
+|++|++++|.+..+|.+..+++|++|++++|.++.++.. .++|++|++++|.++.+|.+..+++|+.|++++|.+++
T Consensus 132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc
Confidence 4555555555555554455555555555555555443321 23555555555555555555555666666666665554
Q ss_pred ccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcccc
Q psy10233 123 IEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVG 172 (207)
Q Consensus 123 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~ 172 (207)
++. . .++|+.|++++|.++. ++. ++.+++|+.|++++|.+.+
T Consensus 210 l~~--~---~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 210 LPD--L---PLSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CCC--C---CTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSS
T ss_pred CCC--C---cCcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcCCc
Confidence 332 1 1356666776666664 333 5667777777777777653
No 110
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=1e-14 Score=105.67 Aligned_cols=124 Identities=24% Similarity=0.344 Sum_probs=63.0
Q ss_pred EEEeecCCccCccCCccCCCCCEEEeecCcccccc-CCccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCC
Q psy10233 46 CLWLENNGISKIENLDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKT 122 (207)
Q Consensus 46 ~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~ 122 (207)
.++++++.+..+|.- -.+++++|++++|.++.++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.
T Consensus 14 ~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp EEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred EEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 445555554444321 0134555555555554332 3445555555555555555442 24455555555555555555
Q ss_pred ccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcccc
Q psy10233 123 IEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVG 172 (207)
Q Consensus 123 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~ 172 (207)
++. ..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|++.+
T Consensus 93 i~~-~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 93 IPP-RTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCT-TTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECCSSCEEC
T ss_pred eCH-HHhCCCCCCCEEECCCCCCCee-ChhhhhcCccccEEEeCCCCeec
Confidence 433 3455555566666666655543 23344555566666666666543
No 111
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=1.4e-14 Score=126.07 Aligned_cols=153 Identities=18% Similarity=0.271 Sum_probs=99.7
Q ss_pred CCCeEEeecCCCcCccC---ccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCcccccc-CCccccC-CcEEecCC
Q psy10233 21 LNDVLYLHFKGYTVIEN---LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVME-NLSHMQL-LDTINLSH 95 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~~~---l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~-L~~L~l~~ 95 (207)
..+.++++.|.+..++. ++++++|+.|++++|.+..+|.+..+++|++|++++|.+..++ .+..+++ |+.|++++
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC
Confidence 45577888888865554 7888888888888888887777888888888888888876554 4777877 88888888
Q ss_pred CccccccC-CCCC--CCCcEEEcCCCccCCccc-c-ccCC--CCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCC
Q psy10233 96 NFIEKIEN-LSCL--PVLRTLHLSHNRLKTIED-I-EHLK--DCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168 (207)
Q Consensus 96 ~~~~~~~~-~~~~--~~L~~L~l~~n~i~~~~~-~-~~l~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n 168 (207)
|.+..+|. +... ++|+.|++++|.+.+..+ . ..+. .+++|+.|++++|.++.. ....+..+++|+.|++++|
T Consensus 629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l-p~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF-PTELFATGSPISTIILSNN 707 (876)
T ss_dssp SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC-CHHHHHTTCCCSEEECCSC
T ss_pred CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCcc-CHHHHccCCCCCEEECCCC
Confidence 88776654 2333 237777777777655221 0 0111 223566666666666642 1233345556666666666
Q ss_pred ccccchh
Q psy10233 169 PCVGKIK 175 (207)
Q Consensus 169 ~~~~~~~ 175 (207)
.+. .+|
T Consensus 708 ~L~-~ip 713 (876)
T 4ecn_A 708 LMT-SIP 713 (876)
T ss_dssp CCS-CCC
T ss_pred cCC-ccC
Confidence 554 444
No 112
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=3.5e-15 Score=115.70 Aligned_cols=165 Identities=17% Similarity=0.082 Sum_probs=87.6
Q ss_pred CCeEEeecCCCcC--ccCc--cCCCCCCEEEeecCCccCc-c-----CCccCCCCCEEEeecCcccccc--CCccccCCc
Q psy10233 22 NDVLYLHFKGYTV--IENL--EEYTGLKCLWLENNGISKI-E-----NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLD 89 (207)
Q Consensus 22 ~~~l~l~~~~~~~--~~~l--~~l~~L~~L~l~~~~l~~~-~-----~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~ 89 (207)
.+.++++.|.+.. +..+ .++++|++|++++|.+... + .+..+++|++|++++|.+...+ .++.+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4455566665532 2233 5566666666666666542 1 1234566666666666664432 355666666
Q ss_pred EEecCCCcccc---cc---CCCCCCCCcEEEcCCCccCCcccc--ccCCCCCCccEEEccCCCCCChhhHHHhccC---C
Q psy10233 90 TINLSHNFIEK---IE---NLSCLPVLRTLHLSHNRLKTIEDI--EHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM---P 158 (207)
Q Consensus 90 ~L~l~~~~~~~---~~---~~~~~~~L~~L~l~~n~i~~~~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~ 158 (207)
+|++++|.+.. ++ .+..+++|+.|++++|.++.++.. ..+..+++|++|++++|.+++. .|..+..+ +
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~ 251 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT-VNPSAPRCMWSS 251 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC-CCSCCSSCCCCT
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc-chhhHHhccCcC
Confidence 66666665432 11 124556666666666666543221 0134456666666666666653 13333333 4
Q ss_pred CCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233 159 ELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194 (207)
Q Consensus 159 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~ 194 (207)
+|+.|++++|.+. .+|... .++|+.|+++
T Consensus 252 ~L~~L~Ls~N~l~-~lp~~~------~~~L~~L~Ls 280 (310)
T 4glp_A 252 ALNSLNLSFAGLE-QVPKGL------PAKLRVLDLS 280 (310)
T ss_dssp TCCCEECCSSCCC-SCCSCC------CSCCSCEECC
T ss_pred cCCEEECCCCCCC-chhhhh------cCCCCEEECC
Confidence 6666666666665 455421 2566666554
No 113
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.58 E-value=6.3e-14 Score=118.06 Aligned_cols=125 Identities=20% Similarity=0.224 Sum_probs=84.5
Q ss_pred CCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccC
Q psy10233 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLK 121 (207)
Q Consensus 42 ~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~ 121 (207)
++|+.|++++|.+..++.. .++|+.|++++|.++.++. .+++|+.|++++|.++.+| ..+++|+.|++++|.++
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLT 254 (622)
T ss_dssp TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCS
T ss_pred CCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCC--CCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCC
Confidence 4444444444444443321 2445555555555444332 2367888888888877766 44578888888888887
Q ss_pred CccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHH
Q psy10233 122 TIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRR 179 (207)
Q Consensus 122 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 179 (207)
.++. .+++|+.|++++|.++. +|..+..+++|+.|++++|++.+..+....
T Consensus 255 ~lp~-----~~~~L~~L~Ls~N~L~~--lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 255 SLPM-----LPSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCCC-----CCTTCCEEECCSSCCCS--CCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred cCCc-----ccccCcEEeCCCCCCCc--CCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 6543 45788999999999885 567788899999999999998877776543
No 114
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=4.6e-17 Score=118.43 Aligned_cols=132 Identities=27% Similarity=0.354 Sum_probs=113.0
Q ss_pred CccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccccC-CccccCCcEEecCCCccccccCCCCCCCCcEEEc
Q psy10233 37 NLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMEN-LSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHL 115 (207)
Q Consensus 37 ~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 115 (207)
.++++++|+.|++++|.+..++.+..+++|++|++++|.++.++. +..+++|+.|++++|.++.+|.+..+++|+.|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l 122 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM 122 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEE
T ss_pred HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEEC
Confidence 678999999999999999999888889999999999999987765 4567899999999999988877777899999999
Q ss_pred CCCccCCccccccCCCCCCccEEEccCCCCCChhhH----------HHhccCCCCcEEEcCCCccc
Q psy10233 116 SHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI----------EVFGAMPELRVLTLSHNPCV 171 (207)
Q Consensus 116 ~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~----------~~~~~~~~L~~l~l~~n~~~ 171 (207)
++|.+++++....+..+++|+.|++++|.+.+. .+ ..+..+++|+.|+ ++++.
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYND-YKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH-HHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCCccccc-cccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 999998865545688899999999999988653 22 3477899999987 66655
No 115
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=2.1e-15 Score=120.35 Aligned_cols=129 Identities=22% Similarity=0.253 Sum_probs=77.6
Q ss_pred CCCCEEEeecCccc--ccc----CCccccCCcEEecCCCcccc------cc-CCCCCCCCcEEEcCCCccCCc---cccc
Q psy10233 64 TEMRSIYMHHNLVK--VME----NLSHMQLLDTINLSHNFIEK------IE-NLSCLPVLRTLHLSHNRLKTI---EDIE 127 (207)
Q Consensus 64 ~~L~~L~l~~n~~~--~~~----~~~~~~~L~~L~l~~~~~~~------~~-~~~~~~~L~~L~l~~n~i~~~---~~~~ 127 (207)
++|++|++++|.+. .++ .+..+++|++|++++|.++. .+ .+..+++|+.|++++|.++.. ..+.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 56666666666653 112 23456667777777776651 23 555667777777777776421 1122
Q ss_pred cCCCCCCccEEEccCCCCCChh---hHHHhc--cCCCCcEEEcCCCccccc----hhhHHHHHHHhCCcceeccCcc
Q psy10233 128 HLKDCPLLSIVDVSHNQIEDEE---VIEVFG--AMPELRVLTLSHNPCVGK----IKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 128 ~l~~~~~L~~L~l~~n~l~~~~---~~~~~~--~~~~L~~l~l~~n~~~~~----~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
.+..+++|+.|++++|.+++.+ ++..+. .+++|+.|++++|.+.+. +|.. +..++++|++|++++
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~---l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV---IDEKMPDLLFLELNG 312 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH---HHHHCTTCCEEECTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH---HHhcCCCceEEEccC
Confidence 4566677777777777776532 233442 267778888888777652 4432 235677777777654
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=7.6e-14 Score=100.92 Aligned_cols=128 Identities=17% Similarity=0.263 Sum_probs=111.3
Q ss_pred CEEEeecCCccCccC-CccCCCCCEEEeecCccccccC---CccccCCcEEecCCCccccc-c-CCCCCCCCcEEEcCCC
Q psy10233 45 KCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVMEN---LSHMQLLDTINLSHNFIEKI-E-NLSCLPVLRTLHLSHN 118 (207)
Q Consensus 45 ~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n 118 (207)
+.++++++.+..+|. +. .++++|++++|.++.++. +..+++|++|++++|.++.+ | .+..+++|+.|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 789999999998875 33 389999999999976643 78999999999999999887 3 5888999999999999
Q ss_pred ccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhh
Q psy10233 119 RLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN 176 (207)
Q Consensus 119 ~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 176 (207)
.+++++. ..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|++.+..+.
T Consensus 89 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 89 KIKEISN-KMFLGLHQLKTLNLYDNQISCV-MPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCCEECS-SSSTTCTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred cCCccCH-HHhcCCCCCCEEECCCCcCCee-CHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 9988655 5688899999999999999975 477888999999999999999887663
No 117
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=1.6e-13 Score=97.77 Aligned_cols=124 Identities=19% Similarity=0.288 Sum_probs=104.1
Q ss_pred CeEEeecCCCcCccCccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCccccccC--CccccCCcEEecCCCcc
Q psy10233 23 DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFI 98 (207)
Q Consensus 23 ~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~~--~~~~~~L~~L~l~~~~~ 98 (207)
..++++.++++.++. .-.++|+.|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.+
T Consensus 10 ~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 456777888766552 234789999999999998753 7889999999999999987654 68899999999999999
Q ss_pred ccccC--CCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCCh
Q psy10233 99 EKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDE 148 (207)
Q Consensus 99 ~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 148 (207)
+.++. +..+++|+.|++++|.+++++. ..+..+++|+.|++++|.+...
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCC
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeecc
Confidence 88753 6788999999999999988655 5678899999999999999863
No 118
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=2.4e-15 Score=120.02 Aligned_cols=158 Identities=18% Similarity=0.242 Sum_probs=98.4
Q ss_pred cCCCCCCEEEeecCCccC-----cc-CCccCCCCCEEEeecCcccccc--C----Cccc---------cCCcEEecCCCc
Q psy10233 39 EEYTGLKCLWLENNGISK-----IE-NLDAQTEMRSIYMHHNLVKVME--N----LSHM---------QLLDTINLSHNF 97 (207)
Q Consensus 39 ~~l~~L~~L~l~~~~l~~-----~~-~~~~l~~L~~L~l~~n~~~~~~--~----~~~~---------~~L~~L~l~~~~ 97 (207)
..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.... . +..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 456666667776666655 22 2455667777777777664221 1 2223 677777777777
Q ss_pred ccc--cc----CCCCCCCCcEEEcCCCccCCcc----ccccCCCCCCccEEEccCCCCCC---hhhHHHhccCCCCcEEE
Q psy10233 98 IEK--IE----NLSCLPVLRTLHLSHNRLKTIE----DIEHLKDCPLLSIVDVSHNQIED---EEVIEVFGAMPELRVLT 164 (207)
Q Consensus 98 ~~~--~~----~~~~~~~L~~L~l~~n~i~~~~----~~~~l~~~~~L~~L~l~~n~l~~---~~~~~~~~~~~~L~~l~ 164 (207)
++. ++ .+..+++|+.|++++|.++..+ ....+..+++|+.|++++|.+++ ..++..+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 652 22 2445667888888888776321 11256677788888888888753 22466677788888888
Q ss_pred cCCCccccchhhHHHHHHHh--CCcceeccCccc
Q psy10233 165 LSHNPCVGKIKNYRRMFINL--CVNLRHLDDYPV 196 (207)
Q Consensus 165 l~~n~~~~~~~~~~~~~~~~--~~~L~~L~~~~~ 196 (207)
+++|.+.+.........+.. +++|+.|++++.
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 88888765433322223433 788888887653
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=1.4e-14 Score=120.92 Aligned_cols=125 Identities=20% Similarity=0.366 Sum_probs=106.6
Q ss_pred CCCEEEeecCccccccCCccccCCcEEecCCCcccccc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCC
Q psy10233 65 EMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143 (207)
Q Consensus 65 ~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n 143 (207)
.|++|++++|.++.++.+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+++++ .+..+++|+.|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp---~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD---GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG---GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc---ccCCCCCCcEEECCCC
Confidence 58899999999988888999999999999999999886 5888899999999999998853 6888999999999999
Q ss_pred CCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccC
Q psy10233 144 QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDD 193 (207)
Q Consensus 144 ~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~ 193 (207)
.+++...|..++.+++|+.|++++|++.+. |.....+...+++|+.||+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE-EGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGS-SSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCC-ccHHHHHHHHCcccCccCC
Confidence 999852278889999999999999998854 3344446778999998864
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=1.2e-13 Score=99.92 Aligned_cols=123 Identities=23% Similarity=0.280 Sum_probs=105.2
Q ss_pred CeEEeecCCCcCccCccCCCCCCEEEeecCCccCcc-CCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccc
Q psy10233 23 DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIE-NLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIE 99 (207)
Q Consensus 23 ~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~ 99 (207)
..++++.++++.++.- -.++++.|++++|.+..++ .+..+++|++|++++|.++.++ .|..+++|++|++++|.++
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 4678888888766531 2368999999999999886 5888999999999999998765 3889999999999999999
Q ss_pred ccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCC
Q psy10233 100 KIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147 (207)
Q Consensus 100 ~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~ 147 (207)
.++ .+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.+..
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEEC
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeec
Confidence 884 48889999999999999988655 568889999999999998864
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.54 E-value=2e-13 Score=114.98 Aligned_cols=114 Identities=15% Similarity=0.079 Sum_probs=76.2
Q ss_pred CCCCEEEeecCccccccCCccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCC
Q psy10233 64 TEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143 (207)
Q Consensus 64 ~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n 143 (207)
++|+.|++++|.++.++. ..++|+.|++++|.++.+|.. +++|+.|++++|.+++++ ..+++|+.|++++|
T Consensus 181 ~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp-----~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPT--LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP-----VLPSELKELMVSGN 251 (622)
T ss_dssp TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSS
T ss_pred CCCcEEECCCCCCCCCCC--ccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCC-----CCCCcCcEEECCCC
Confidence 444444444444433322 124455555555555444322 367888888888877654 34578999999999
Q ss_pred CCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCccc
Q psy10233 144 QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPV 196 (207)
Q Consensus 144 ~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~ 196 (207)
.++.. +. .+++|+.|++++|.+. .+|.. +..+++|+.|++.+.
T Consensus 252 ~L~~l--p~---~~~~L~~L~Ls~N~L~-~lp~~----l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 252 RLTSL--PM---LPSGLLSLSVYRNQLT-RLPES----LIHLSSETTVNLEGN 294 (622)
T ss_dssp CCSCC--CC---CCTTCCEEECCSSCCC-SCCGG----GGGSCTTCEEECCSC
T ss_pred CCCcC--Cc---ccccCcEEeCCCCCCC-cCCHH----HhhccccCEEEecCC
Confidence 99873 43 5789999999999988 77764 678999999988653
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=3.3e-14 Score=118.72 Aligned_cols=123 Identities=22% Similarity=0.428 Sum_probs=106.2
Q ss_pred CCCEEEeecCCccCccCCccCCCCCEEEeecCcccccc-CCccccCCcEEecCCCccccccCCCCCCCCcEEEcCCCccC
Q psy10233 43 GLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLK 121 (207)
Q Consensus 43 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~i~ 121 (207)
.|+.|++++|.+..+|.+..+++|++|++++|.++.++ .++.+++|+.|++++|.++.+|.+..+++|+.|++++|.++
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCC
Confidence 58899999999999988999999999999999997664 58899999999999999999998999999999999999999
Q ss_pred CccccccCCCCCCccEEEccCCCCCChh--hHHHhccCCCCcEEEc
Q psy10233 122 TIEDIEHLKDCPLLSIVDVSHNQIEDEE--VIEVFGAMPELRVLTL 165 (207)
Q Consensus 122 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~l~l 165 (207)
+...+..+..+++|+.|++++|.+++.. ....+..+++|+.|++
T Consensus 522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8742357889999999999999987642 1234556889998864
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=4.7e-14 Score=111.15 Aligned_cols=178 Identities=17% Similarity=0.241 Sum_probs=116.1
Q ss_pred hhhcCCccCC----CCCCeEEeecCCCcCcc--CccCCCCCCEEEeecCCccC-cc--CCccCCCCCE-EEeecCccccc
Q psy10233 10 CKDNKLYLTP----SLNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISK-IE--NLDAQTEMRS-IYMHHNLVKVM 79 (207)
Q Consensus 10 c~~~~~~~~~----~~~~~l~l~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~-~~--~~~~l~~L~~-L~l~~n~~~~~ 79 (207)
|...+++..| ...+.+++++|.++.++ .+.++++|+.|++++|.+.+ ++ .|..++++.+ +.+..|.++.+
T Consensus 16 C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 16 CQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp EESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred ecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 3444455444 34567999999998764 47899999999999998755 33 3667777665 45556777655
Q ss_pred c--CCccccCCcEEecCCCccccccC---------------------------CCCC-CCCcEEEcCCCccCCccccccC
Q psy10233 80 E--NLSHMQLLDTINLSHNFIEKIEN---------------------------LSCL-PVLRTLHLSHNRLKTIEDIEHL 129 (207)
Q Consensus 80 ~--~~~~~~~L~~L~l~~~~~~~~~~---------------------------~~~~-~~L~~L~l~~n~i~~~~~~~~l 129 (207)
+ .|..+++|++|++++|.+..++. +..+ ..++.|++++|.++.++. ..
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~--~~ 173 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN--SA 173 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT--TS
T ss_pred CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh--hh
Confidence 2 36777888888887776654321 1111 245667777777766544 22
Q ss_pred CCCCCccEEEccC-CCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233 130 KDCPLLSIVDVSH-NQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194 (207)
Q Consensus 130 ~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~ 194 (207)
....+++.+++.. |.++.. ..+.+..+++|+.|++++|.+. .+|.. .+.++.+|+.++..
T Consensus 174 f~~~~L~~l~l~~~n~l~~i-~~~~f~~l~~L~~LdLs~N~l~-~lp~~---~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEEL-PNDVFHGASGPVILDISRTRIH-SLPSY---GLENLKKLRARSTY 234 (350)
T ss_dssp STTEEEEEEECTTCTTCCCC-CTTTTTTEECCSEEECTTSCCC-CCCSS---SCTTCCEEECTTCT
T ss_pred ccccchhHHhhccCCcccCC-CHHHhccCcccchhhcCCCCcC-ccChh---hhccchHhhhccCC
Confidence 2345677777764 566553 2456778888999999999876 56543 25566666665544
No 124
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=1.9e-14 Score=113.94 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=49.8
Q ss_pred CCCeEEeecCCCcCc------cCccCCC-CCCEEEeecCCccCcc--CCccC-----CCCCEEEeecCccccccC-----
Q psy10233 21 LNDVLYLHFKGYTVI------ENLEEYT-GLKCLWLENNGISKIE--NLDAQ-----TEMRSIYMHHNLVKVMEN----- 81 (207)
Q Consensus 21 ~~~~l~l~~~~~~~~------~~l~~l~-~L~~L~l~~~~l~~~~--~~~~l-----~~L~~L~l~~n~~~~~~~----- 81 (207)
..+.+++++|.+... ..+.+++ +|++|++++|.+.... .+..+ ++|++|++++|.++....
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 345566666665432 2345555 5666666666655431 12222 556666666665543211
Q ss_pred -Cccc-cCCcEEecCCCcccccc------CCCC-CCCCcEEEcCCCccC
Q psy10233 82 -LSHM-QLLDTINLSHNFIEKIE------NLSC-LPVLRTLHLSHNRLK 121 (207)
Q Consensus 82 -~~~~-~~L~~L~l~~~~~~~~~------~~~~-~~~L~~L~l~~n~i~ 121 (207)
+..+ ++|++|++++|.++..+ .+.. .++|+.|++++|.++
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 2222 45556666655554431 1222 235555555555554
No 125
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=1.6e-14 Score=114.29 Aligned_cols=173 Identities=17% Similarity=0.252 Sum_probs=125.2
Q ss_pred EEeecCCCcC-ccCccC-CCCCCEEEeecCCccCcc------CCccCC-CCCEEEeecCcccccc--CCccc-----cCC
Q psy10233 25 LYLHFKGYTV-IENLEE-YTGLKCLWLENNGISKIE------NLDAQT-EMRSIYMHHNLVKVME--NLSHM-----QLL 88 (207)
Q Consensus 25 l~l~~~~~~~-~~~l~~-l~~L~~L~l~~~~l~~~~------~~~~l~-~L~~L~l~~n~~~~~~--~~~~~-----~~L 88 (207)
..++.+++.. ++++.. .++|+.|++++|.+...+ .+..++ +|++|++++|.+.... .+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4567777753 444444 455999999999998763 256777 8999999999987542 34443 899
Q ss_pred cEEecCCCcccccc------CCCCC-CCCcEEEcCCCccCCcccc---ccCCC-CCCccEEEccCCCCCChh---hHHHh
Q psy10233 89 DTINLSHNFIEKIE------NLSCL-PVLRTLHLSHNRLKTIEDI---EHLKD-CPLLSIVDVSHNQIEDEE---VIEVF 154 (207)
Q Consensus 89 ~~L~l~~~~~~~~~------~~~~~-~~L~~L~l~~n~i~~~~~~---~~l~~-~~~L~~L~l~~n~l~~~~---~~~~~ 154 (207)
++|++++|.++..+ .+... ++|+.|++++|.+++.+.. ..+.. .++|++|++++|.+++.. +...+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 99999999997652 14444 7999999999999775431 12344 358999999999888532 34445
Q ss_pred ccCC-CCcEEEcCCCccccchhhHHHHHHHhC-CcceeccCcccC
Q psy10233 155 GAMP-ELRVLTLSHNPCVGKIKNYRRMFINLC-VNLRHLDDYPVF 197 (207)
Q Consensus 155 ~~~~-~L~~l~l~~n~~~~~~~~~~~~~~~~~-~~L~~L~~~~~~ 197 (207)
..++ +|+.|++++|.+.+..+......+..+ ++|+.||++...
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 5555 899999999988776666665566777 488888887543
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=8.9e-15 Score=125.48 Aligned_cols=109 Identities=19% Similarity=0.220 Sum_probs=68.3
Q ss_pred ccCCCCCCEEEeecCCccCcc-CCccCCCCCEEEeecCcccccc-CCccccCCcEEecCCCcccccc-CCCCCCCCcEEE
Q psy10233 38 LEEYTGLKCLWLENNGISKIE-NLDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHNFIEKIE-NLSCLPVLRTLH 114 (207)
Q Consensus 38 l~~l~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~ 114 (207)
+..++.|+.|++++|.+..++ .+..+++|++|++++|.++.++ .+..+++|++|+|++|.++.+| .+..+++|+.|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 455666667777777666654 3556666777777777665443 3666666777777777666554 355666677777
Q ss_pred cCCCccCCccccccCCCCCCccEEEccCCCCCCh
Q psy10233 115 LSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDE 148 (207)
Q Consensus 115 l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 148 (207)
+++|.++.++. .+..+++|+.|+|++|.+++.
T Consensus 300 L~~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 300 FFDNMVTTLPW--EFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp CCSSCCCCCCS--STTSCTTCCCEECTTSCCCSH
T ss_pred CCCCCCCccCh--hhhcCCCccEEeCCCCccCCC
Confidence 77776665433 466666677777777766653
No 127
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.49 E-value=3.6e-14 Score=115.37 Aligned_cols=174 Identities=16% Similarity=0.079 Sum_probs=88.1
Q ss_pred CCeEEeecCCCcC------ccCccCCCCCCEEEeecCCccCc--cC-----CccCCCCCEEEeecCccccc------cCC
Q psy10233 22 NDVLYLHFKGYTV------IENLEEYTGLKCLWLENNGISKI--EN-----LDAQTEMRSIYMHHNLVKVM------ENL 82 (207)
Q Consensus 22 ~~~l~l~~~~~~~------~~~l~~l~~L~~L~l~~~~l~~~--~~-----~~~l~~L~~L~l~~n~~~~~------~~~ 82 (207)
.+.++++.|.++. +..+.++++|++|++++|.+... .. ....++|++|++++|.++.. ..+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 4556666666542 34456667777777777765532 11 12234566666666665431 123
Q ss_pred ccccCCcEEecCCCccccc--cCCC-----CCCCCcEEEcCCCccCCcc---ccccCCCCCCccEEEccCCCCCChhh--
Q psy10233 83 SHMQLLDTINLSHNFIEKI--ENLS-----CLPVLRTLHLSHNRLKTIE---DIEHLKDCPLLSIVDVSHNQIEDEEV-- 150 (207)
Q Consensus 83 ~~~~~L~~L~l~~~~~~~~--~~~~-----~~~~L~~L~l~~n~i~~~~---~~~~l~~~~~L~~L~l~~n~l~~~~~-- 150 (207)
..+++|++|++++|.++.. ..+. ..++|+.|++++|.+++.+ ....+..+++|++|++++|.+.+...
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 246 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 246 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence 4456666777766665432 1111 2346666666666655421 11233445566666666665554321
Q ss_pred --HHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 151 --IEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 151 --~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
+..+..+++|+.|++++|.+++.........+..+++|++|+++.
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 111223555666666666554332222222345556666665554
No 128
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.44 E-value=3.9e-14 Score=115.18 Aligned_cols=156 Identities=15% Similarity=0.085 Sum_probs=68.0
Q ss_pred cCCCCCCEEEeecCCccCc--cCCc-----cCCCCCEEEeecCccccc------cCCccccCCcEEecCCCccccc----
Q psy10233 39 EEYTGLKCLWLENNGISKI--ENLD-----AQTEMRSIYMHHNLVKVM------ENLSHMQLLDTINLSHNFIEKI---- 101 (207)
Q Consensus 39 ~~l~~L~~L~l~~~~l~~~--~~~~-----~l~~L~~L~l~~n~~~~~------~~~~~~~~L~~L~l~~~~~~~~---- 101 (207)
..+++|+.|++++|.+... ..+. ..++|++|++++|.++.. ..+..+++|++|++++|.++..
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 246 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 246 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence 3445555555555554432 1111 133555555555554331 1233455566666666655432
Q ss_pred --cC-CCCCCCCcEEEcCCCccCCcc---ccccCCCCCCccEEEccCCCCCChhhHHHhc-----cCCCCcEEEcCCCcc
Q psy10233 102 --EN-LSCLPVLRTLHLSHNRLKTIE---DIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG-----AMPELRVLTLSHNPC 170 (207)
Q Consensus 102 --~~-~~~~~~L~~L~l~~n~i~~~~---~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~~L~~l~l~~n~~ 170 (207)
+. ...+++|+.|++++|.++..+ ....+..+++|++|++++|.+.+.. +..+. ..++|+.|++++|.+
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG-ARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH-HHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH-HHHHHHHhccCCccceeeEcCCCCC
Confidence 11 123455666666666554421 0112333455555555555554321 11111 113444555555544
Q ss_pred ccchhhHHHHHHHhCCcceeccCcc
Q psy10233 171 VGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 171 ~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
.+.........+..+++|+.|+++.
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~ 350 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISN 350 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred chHHHHHHHHHHhhCCCccEEEccC
Confidence 4332222222344455555555443
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=1.7e-13 Score=117.64 Aligned_cols=116 Identities=21% Similarity=0.283 Sum_probs=99.7
Q ss_pred CCccCCCCCEEEeecCcccccc-CCccccCCcEEecCCCcccccc-CCCCCCCCcEEEcCCCccCCccccccCCCCCCcc
Q psy10233 59 NLDAQTEMRSIYMHHNLVKVME-NLSHMQLLDTINLSHNFIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLS 136 (207)
Q Consensus 59 ~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~ 136 (207)
.+..++.|+.|++++|.+..++ .+..+++|++|+|++|.++.+| .+..+++|+.|++++|.++.++. .+..+++|+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~ 296 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA--ELGSCFQLK 296 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCS--SGGGGTTCS
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccCh--hhcCCCCCC
Confidence 3778899999999999997664 4678999999999999999876 48889999999999999987644 688899999
Q ss_pred EEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHH
Q psy10233 137 IVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYR 178 (207)
Q Consensus 137 ~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 178 (207)
.|+|++|.++. +|..++.+++|+.|++++|.+.+.+|...
T Consensus 297 ~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 297 YFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp EEECCSSCCCC--CCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred EEECCCCCCCc--cChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 99999999986 57678999999999999999998777654
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=3.3e-12 Score=90.48 Aligned_cols=101 Identities=17% Similarity=0.244 Sum_probs=52.9
Q ss_pred CCEEEeecCCccCccCCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccccccC--CCCCCCCcEEEcCCCc
Q psy10233 44 LKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNR 119 (207)
Q Consensus 44 L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~ 119 (207)
.+.+++++|.+..+|.-. .+++++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|+.|++++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 356666666666655311 255666666666655442 24555555555555555555432 3445555555555555
Q ss_pred cCCccccccCCCCCCccEEEccCCCCC
Q psy10233 120 LKTIEDIEHLKDCPLLSIVDVSHNQIE 146 (207)
Q Consensus 120 i~~~~~~~~l~~~~~L~~L~l~~n~l~ 146 (207)
+++++. ..+..+++|+.|++++|.+.
T Consensus 90 l~~~~~-~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPR-GAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCH-HHhcCCCCCCEEEeCCCCCC
Confidence 554333 33444555555555555443
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=1.1e-11 Score=87.71 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=75.7
Q ss_pred CCCEEEeecCccccccCCccccCCcEEecCCCccccc-c-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccC
Q psy10233 65 EMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI-E-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSH 142 (207)
Q Consensus 65 ~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~ 142 (207)
..+.+++++|.++.++.- -.+++++|++++|.++.+ + .+..+++|+.|++++|.+++++. ..+..+++|+.|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~-~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTG-IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCcc-CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh-hhccCCCCCCEEECCC
Confidence 356777777777665531 136777888888887776 3 36677788888888888777544 4567777888888888
Q ss_pred CCCCChhhHHHhccCCCCcEEEcCCCccccchh
Q psy10233 143 NQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK 175 (207)
Q Consensus 143 n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 175 (207)
|.++.. .+..+..+++|+.|++++|++.+..+
T Consensus 88 N~l~~~-~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSI-PRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCC-CTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEe-CHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 887764 24456777888888888887765543
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=1.5e-11 Score=87.50 Aligned_cols=100 Identities=18% Similarity=0.302 Sum_probs=60.7
Q ss_pred CEEEeecCCccCccC-CccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccccccC--CCCCCCCcEEEcCCCc
Q psy10233 45 KCLWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNR 119 (207)
Q Consensus 45 ~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~ 119 (207)
+.++++++.+..+|. +. ++|++|++++|.++.++ .+..+++|++|++++|.++.+|. +..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 566677766666654 32 56666666666665442 25566666666666666666542 4556666666666666
Q ss_pred cCCccccccCCCCCCccEEEccCCCCCC
Q psy10233 120 LKTIEDIEHLKDCPLLSIVDVSHNQIED 147 (207)
Q Consensus 120 i~~~~~~~~l~~~~~L~~L~l~~n~l~~ 147 (207)
++.++. ..+..+++|+.|++++|.+..
T Consensus 93 l~~l~~-~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKSIPR-GAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCT-TTTTTCTTCSEEECCSSCBCT
T ss_pred cceeCH-HHhccccCCCEEEeCCCCccc
Confidence 665433 345566666666666666553
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=1.1e-11 Score=88.19 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=89.4
Q ss_pred CCEEEeecCccccccC-CccccCCcEEecCCCccccc-c-CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccC
Q psy10233 66 MRSIYMHHNLVKVMEN-LSHMQLLDTINLSHNFIEKI-E-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSH 142 (207)
Q Consensus 66 L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~ 142 (207)
-+.+++++|.++.++. + .++|+.|++++|.++.+ + .+..+++|+.|++++|.+++++. ..+..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT-GVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh-hHhCCcchhhEEECCC
Confidence 4789999999977765 3 37899999999999888 3 47889999999999999998655 5678899999999999
Q ss_pred CCCCChhhHHHhccCCCCcEEEcCCCccccch
Q psy10233 143 NQIEDEEVIEVFGAMPELRVLTLSHNPCVGKI 174 (207)
Q Consensus 143 n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 174 (207)
|.++.. .+..+..+++|+.|++++|++.+..
T Consensus 91 N~l~~l-~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 91 NHLKSI-PRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SCCCCC-CTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred Ccccee-CHHHhccccCCCEEEeCCCCccccc
Confidence 999975 3456889999999999999987543
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.32 E-value=2e-11 Score=96.07 Aligned_cols=165 Identities=16% Similarity=0.148 Sum_probs=105.6
Q ss_pred CCCeEEeecCCC-cCcc--CccCCCCCCE-EEeecCCccCcc--CCccCCCCCEEEeecCccc-----------------
Q psy10233 21 LNDVLYLHFKGY-TVIE--NLEEYTGLKC-LWLENNGISKIE--NLDAQTEMRSIYMHHNLVK----------------- 77 (207)
Q Consensus 21 ~~~~l~l~~~~~-~~~~--~l~~l~~L~~-L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~~----------------- 77 (207)
..+.+++++|.+ +.++ .+.+++++.. +.+.+|.+..++ .+..+++|++|++++|.++
T Consensus 55 ~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~ 134 (350)
T 4ay9_X 55 DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 134 (350)
T ss_dssp TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEE
T ss_pred CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhh
Confidence 345566666664 2222 3445555443 344455555542 2455556666666555442
Q ss_pred --------ccc--CCccc-cCCcEEecCCCcccccc-CCCCCCCCcEEEcCC-CccCCccccccCCCCCCccEEEccCCC
Q psy10233 78 --------VME--NLSHM-QLLDTINLSHNFIEKIE-NLSCLPVLRTLHLSH-NRLKTIEDIEHLKDCPLLSIVDVSHNQ 144 (207)
Q Consensus 78 --------~~~--~~~~~-~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~-n~i~~~~~~~~l~~~~~L~~L~l~~n~ 144 (207)
.++ .+..+ ..++.|++++|.++.++ ......+++.+++++ |.++.++. ..+..+++|+.|++++|.
T Consensus 135 l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTR 213 (350)
T ss_dssp EESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSC
T ss_pred hccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCH-HHhccCcccchhhcCCCC
Confidence 221 13333 35778999999998874 455667899999975 67777655 678899999999999999
Q ss_pred CCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 145 l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
++.. +. ..+.+|+.|.+.++.-...+|. +.++++|+.+++.+
T Consensus 214 l~~l--p~--~~~~~L~~L~~l~~~~l~~lP~-----l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 214 IHSL--PS--YGLENLKKLRARSTYNLKKLPT-----LEKLVALMEASLTY 255 (350)
T ss_dssp CCCC--CS--SSCTTCCEEECTTCTTCCCCCC-----TTTCCSCCEEECSC
T ss_pred cCcc--Ch--hhhccchHhhhccCCCcCcCCC-----chhCcChhhCcCCC
Confidence 9974 32 2356677777766665557775 56788888877654
No 135
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=1e-12 Score=104.32 Aligned_cols=154 Identities=19% Similarity=0.141 Sum_probs=92.0
Q ss_pred CCeEEeecCCCcCc--cC----cc-CCCCCCEEEeecCCccCc--cCC-ccCCCCCEEEeecCcccccc--CC-----cc
Q psy10233 22 NDVLYLHFKGYTVI--EN----LE-EYTGLKCLWLENNGISKI--ENL-DAQTEMRSIYMHHNLVKVME--NL-----SH 84 (207)
Q Consensus 22 ~~~l~l~~~~~~~~--~~----l~-~l~~L~~L~l~~~~l~~~--~~~-~~l~~L~~L~l~~n~~~~~~--~~-----~~ 84 (207)
.+.++++.|.+... .. +. ..++|+.|++++|.+... ..+ ..+++|++|++++|.+.... .+ ..
T Consensus 74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~ 153 (372)
T 3un9_A 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHD 153 (372)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHST
T ss_pred CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhc
Confidence 44566777666421 11 12 225777777777776542 222 23566777888877764321 11 23
Q ss_pred ccCCcEEecCCCccccc------cCCCCCCCCcEEEcCCCccCCccc---cccCCCCCCccEEEccCCCCCChh---hHH
Q psy10233 85 MQLLDTINLSHNFIEKI------ENLSCLPVLRTLHLSHNRLKTIED---IEHLKDCPLLSIVDVSHNQIEDEE---VIE 152 (207)
Q Consensus 85 ~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~~~~L~~L~l~~n~l~~~~---~~~ 152 (207)
.++|++|++++|.++.. ..+...++|+.|++++|.+++.+. ...+...++|+.|++++|.+++.+ +..
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 56677888888777542 123456777888888887765321 123455667788888888777543 223
Q ss_pred HhccCCCCcEEEcCCCccccchh
Q psy10233 153 VFGAMPELRVLTLSHNPCVGKIK 175 (207)
Q Consensus 153 ~~~~~~~L~~l~l~~n~~~~~~~ 175 (207)
.+...+.|+.|++++|.+.+...
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCHHHH
T ss_pred HHHhCCCCCEEeccCCCCCHHHH
Confidence 44456778888888887764433
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=1.2e-10 Score=90.84 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=23.7
Q ss_pred CCCCCEEEeecCCccCcc--CCccCCCCCEEEeecCcc
Q psy10233 41 YTGLKCLWLENNGISKIE--NLDAQTEMRSIYMHHNLV 76 (207)
Q Consensus 41 l~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~l~~n~~ 76 (207)
+++|+.+.+.+ .+..++ .|..+++|+.++++.|.+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i 136 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTA 136 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCc
Confidence 77777777777 666653 367777777777777754
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=9.9e-11 Score=91.86 Aligned_cols=98 Identities=22% Similarity=0.275 Sum_probs=61.0
Q ss_pred EEeecC-CCcCccCccCCCCCCEEEeec-CCccCccC--CccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCcc
Q psy10233 25 LYLHFK-GYTVIENLEEYTGLKCLWLEN-NGISKIEN--LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFI 98 (207)
Q Consensus 25 l~l~~~-~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~ 98 (207)
++++.+ +++.++.+..+++|+.|++++ |.+..++. |..+++|++|++++|.++.++ .|..+++|+.|+|++|.+
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 456665 665554466777777777774 77776642 666777777777777765543 356667777777777776
Q ss_pred cccc-CCCCCCCCcEEEcCCCccCC
Q psy10233 99 EKIE-NLSCLPVLRTLHLSHNRLKT 122 (207)
Q Consensus 99 ~~~~-~~~~~~~L~~L~l~~n~i~~ 122 (207)
+.+| .......|+.|++.+|.+..
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred ceeCHHHcccCCceEEEeeCCCccC
Confidence 6653 22222236666666666654
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=1.9e-10 Score=90.18 Aligned_cols=101 Identities=16% Similarity=0.291 Sum_probs=78.8
Q ss_pred CEEEeecC-CccCccCCccCCCCCEEEeec-Ccccccc--CCccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCC
Q psy10233 45 KCLWLENN-GISKIENLDAQTEMRSIYMHH-NLVKVME--NLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHN 118 (207)
Q Consensus 45 ~~L~l~~~-~l~~~~~~~~l~~L~~L~l~~-n~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n 118 (207)
..++++++ .+..+|.+..+++|++|++++ |.++.++ .|..+++|+.|+|++|.++.++ .+..+++|+.|+|++|
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 35688887 888887787888899999985 8887664 3788889999999999888773 3677888999999999
Q ss_pred ccCCccccccCCCCCCccEEEccCCCCCC
Q psy10233 119 RLKTIEDIEHLKDCPLLSIVDVSHNQIED 147 (207)
Q Consensus 119 ~i~~~~~~~~l~~~~~L~~L~l~~n~l~~ 147 (207)
.++.++. ..+..++ |+.|++.+|.+..
T Consensus 91 ~l~~~~~-~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSW-KTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCS-TTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCH-HHcccCC-ceEEEeeCCCccC
Confidence 8887654 4455554 8888888888874
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=5.3e-12 Score=100.28 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=115.8
Q ss_pred CCCCCEEEeecCCccCcc--CC----c-cCCCCCEEEeecCccccc--cCC-ccccCCcEEecCCCcccccc--C----C
Q psy10233 41 YTGLKCLWLENNGISKIE--NL----D-AQTEMRSIYMHHNLVKVM--ENL-SHMQLLDTINLSHNFIEKIE--N----L 104 (207)
Q Consensus 41 l~~L~~L~l~~~~l~~~~--~~----~-~l~~L~~L~l~~n~~~~~--~~~-~~~~~L~~L~l~~~~~~~~~--~----~ 104 (207)
++.|+.|++++|.+.... .+ . ..++|++|++++|.+... ..+ ..+++|+.|++++|.++..+ . +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467899999999987532 22 2 236899999999988542 223 35678999999999986531 1 2
Q ss_pred -CCCCCCcEEEcCCCccCCccc---cccCCCCCCccEEEccCCCCCChh---hHHHhccCCCCcEEEcCCCccccchhhH
Q psy10233 105 -SCLPVLRTLHLSHNRLKTIED---IEHLKDCPLLSIVDVSHNQIEDEE---VIEVFGAMPELRVLTLSHNPCVGKIKNY 177 (207)
Q Consensus 105 -~~~~~L~~L~l~~n~i~~~~~---~~~l~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 177 (207)
...++|+.|++++|.+++.+. ...+..+++|++|++++|.+++.+ +...+..+++|+.|++++|.+++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 346889999999999876322 123467889999999999998643 2455677889999999999988655555
Q ss_pred HHHHHHhCCcceeccCccc
Q psy10233 178 RRMFINLCVNLRHLDDYPV 196 (207)
Q Consensus 178 ~~~~~~~~~~L~~L~~~~~ 196 (207)
....+..+++|+.||+++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHHCSSCCEEECTTS
T ss_pred HHHHHHhCCCCCEEeccCC
Confidence 5556778899999998754
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.08 E-value=2.1e-10 Score=95.94 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=73.8
Q ss_pred CCCCCCEEEeecCCccCcc------CCccCCCCCEEEeecCccccc-----cC-CccccCCcEEecCCCcccccc-----
Q psy10233 40 EYTGLKCLWLENNGISKIE------NLDAQTEMRSIYMHHNLVKVM-----EN-LSHMQLLDTINLSHNFIEKIE----- 102 (207)
Q Consensus 40 ~l~~L~~L~l~~~~l~~~~------~~~~l~~L~~L~l~~n~~~~~-----~~-~~~~~~L~~L~l~~~~~~~~~----- 102 (207)
++++|++|++++|.+.... .+..+++|++|++++|.++.. +. +..+++|+.|++++|.+..++
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 5666777777766554321 123455666666666655411 11 234556666666655443321
Q ss_pred -----------------------CCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCC
Q psy10233 103 -----------------------NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE 159 (207)
Q Consensus 103 -----------------------~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 159 (207)
.+..+++|+.++++++....++ ..+..+++|+.|++++|.+++..+...+..+++
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP--ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGG--GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHH--HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 2233344444444443222221 234455666677777666655444444566666
Q ss_pred CcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233 160 LRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194 (207)
Q Consensus 160 L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~ 194 (207)
|+.|+++ +.+.+ .....+...|++|++|++.
T Consensus 320 L~~L~L~-~~~~~---~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 320 LEVLETR-NVIGD---RGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CCEEEEE-GGGHH---HHHHHHHHHCTTCCEEEEE
T ss_pred CCEEecc-CccCH---HHHHHHHHhCCCCCEEEee
Confidence 6666666 22221 1112234556666666555
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=2.4e-10 Score=89.13 Aligned_cols=144 Identities=20% Similarity=0.260 Sum_probs=106.1
Q ss_pred CCCCCEEEeecCCcc--------------------Ccc--CCcc--------CCCCCEEEeecCcccccc--CCccccCC
Q psy10233 41 YTGLKCLWLENNGIS--------------------KIE--NLDA--------QTEMRSIYMHHNLVKVME--NLSHMQLL 88 (207)
Q Consensus 41 l~~L~~L~l~~~~l~--------------------~~~--~~~~--------l~~L~~L~l~~n~~~~~~--~~~~~~~L 88 (207)
+++|+.|++++|.+. .++ .|.. +++|+.+++.. .++.++ .|..|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 788889999988877 222 2566 89999999999 776664 48899999
Q ss_pred cEEecCCCccccccC--CC-------------------------------------------------------------
Q psy10233 89 DTINLSHNFIEKIEN--LS------------------------------------------------------------- 105 (207)
Q Consensus 89 ~~L~l~~~~~~~~~~--~~------------------------------------------------------------- 105 (207)
+.++++.|.+..++. +.
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 999999886422110 00
Q ss_pred -----------------CCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCc-EEEcCC
Q psy10233 106 -----------------CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELR-VLTLSH 167 (207)
Q Consensus 106 -----------------~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~-~l~l~~ 167 (207)
.+++|+.+++++|.++.++. ..+..+++|+.+++..| ++.. ....|..+++|+ .+++.+
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~-~aF~~~~~L~~l~l~~n-i~~I-~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD-FTFAQKKYLLKIKLPHN-LKTI-GQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT-TTTTTCTTCCEEECCTT-CCEE-CTTTTTTCTTCCEEEEECT
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH-hhhhCCCCCCEEECCcc-ccee-hHHHhhCChhccEEEEEcc
Confidence 15688889999888887665 67888889999999887 6654 356778888898 888887
Q ss_pred CccccchhhHHHHHHHhCCcceeccC
Q psy10233 168 NPCVGKIKNYRRMFINLCVNLRHLDD 193 (207)
Q Consensus 168 n~~~~~~~~~~~~~~~~~~~L~~L~~ 193 (207)
.+. .++.. .+..|++|+.+++
T Consensus 284 -~l~-~I~~~---aF~~c~~L~~l~l 304 (329)
T 3sb4_A 284 -SVT-AIEFG---AFMGCDNLRYVLA 304 (329)
T ss_dssp -TCC-EECTT---TTTTCTTEEEEEE
T ss_pred -cce-EEchh---hhhCCccCCEEEe
Confidence 444 45433 3778888888876
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.04 E-value=1.5e-10 Score=96.79 Aligned_cols=61 Identities=11% Similarity=0.112 Sum_probs=30.9
Q ss_pred CCCCccEEEcc-----------CCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233 131 DCPLLSIVDVS-----------HNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194 (207)
Q Consensus 131 ~~~~L~~L~l~-----------~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~ 194 (207)
.+++|++|+++ .+.+++..+......+++|+.|+++.|.+++..+.. +...+++|+.|++.
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~---l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES---IGTYLKNLCDFRLV 411 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH---HHHHCCSCCEEEEE
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH---HHhhCCCCcEEEEe
Confidence 34555555555 244544434444445566666666555554433322 23346666666554
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.88 E-value=2.4e-09 Score=89.54 Aligned_cols=127 Identities=14% Similarity=0.176 Sum_probs=61.4
Q ss_pred cCCCCCEEEeecCccccc--cCCc-cccCCcEEecCCC-cccc--ccC-CCCCCCCcEEEcCCCccCCccc---cccCCC
Q psy10233 62 AQTEMRSIYMHHNLVKVM--ENLS-HMQLLDTINLSHN-FIEK--IEN-LSCLPVLRTLHLSHNRLKTIED---IEHLKD 131 (207)
Q Consensus 62 ~l~~L~~L~l~~n~~~~~--~~~~-~~~~L~~L~l~~~-~~~~--~~~-~~~~~~L~~L~l~~n~i~~~~~---~~~l~~ 131 (207)
.+++|++|++++|.+... ..+. .+++|++|++++| .++. ++. ...+++|+.|++++|.+++... ......
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 345666666666654322 1222 4556666666665 3332 222 2245566666666665544221 112234
Q ss_pred CCCccEEEccCCC--CCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceecc
Q psy10233 132 CPLLSIVDVSHNQ--IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192 (207)
Q Consensus 132 ~~~L~~L~l~~n~--l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~ 192 (207)
+++|+.|++++|. +....+...+..+++|+.|++++|...+.++. .+..+++|+.|+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~----~~~~~~~L~~L~ 241 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT----LLQRAPQLEELG 241 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH----HHHHCTTCSEEE
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH----HHhcCCcceEcc
Confidence 5566666666664 33333334444556666666666532222222 344555555554
No 144
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=2.3e-09 Score=84.71 Aligned_cols=133 Identities=13% Similarity=0.145 Sum_probs=58.3
Q ss_pred ccCCCCCEEEeecCc-cccccCCccccCCcEEecCCCccccc--cCC--CCCCCCcEEEcCC--Ccc------CCccccc
Q psy10233 61 DAQTEMRSIYMHHNL-VKVMENLSHMQLLDTINLSHNFIEKI--ENL--SCLPVLRTLHLSH--NRL------KTIEDIE 127 (207)
Q Consensus 61 ~~l~~L~~L~l~~n~-~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~--~~~~~L~~L~l~~--n~i------~~~~~~~ 127 (207)
..+|+|+.|.++++. +. ++.+ .+++|+.|++..+.+... ..+ ..+++|+.|+|+. +.. ..+...-
T Consensus 169 ~~~P~L~~L~L~g~~~l~-l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLS-IGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp HTCTTCCEEEEECCBTCB-CCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred hcCCCCcEEEEeCCCCce-eccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 344566666666552 22 1222 255566666655554321 111 1345566665532 111 0100000
Q ss_pred cCCCCCCccEEEccCCCCCChhhHHHh--ccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 128 HLKDCPLLSIVDVSHNQIEDEEVIEVF--GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 128 ~l~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
....+++|+.|++++|.+.+......+ ..+++|+.|+++.|.+.+.-.......+..+++|+.|+++.
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 112355666666666655532111111 13456666666666554432222211224455666665543
No 145
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.86 E-value=5.4e-09 Score=78.96 Aligned_cols=92 Identities=25% Similarity=0.387 Sum_probs=69.0
Q ss_pred CCCCCcEEEcCCCccCCcccc-ccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchh---hHHHHH
Q psy10233 106 CLPVLRTLHLSHNRLKTIEDI-EHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK---NYRRMF 181 (207)
Q Consensus 106 ~~~~L~~L~l~~n~i~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~ 181 (207)
.+++|+.|++++|.++++... ..+..+++|+.|+|++|.+++......+..+ +|+.|++++|++.+.+| .++..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 456788888888887775432 2345678899999999988875333444444 89999999999987554 566678
Q ss_pred HHhCCcceeccCcccCH
Q psy10233 182 INLCVNLRHLDDYPVFD 198 (207)
Q Consensus 182 ~~~~~~L~~L~~~~~~~ 198 (207)
+..+++|+.||...+++
T Consensus 247 l~~~P~L~~LDg~~v~p 263 (267)
T 3rw6_A 247 RERFPKLLRLDGHELPP 263 (267)
T ss_dssp HHHCTTCCEESSCBCCC
T ss_pred HHHCcccCeECCcCCCC
Confidence 99999999999987754
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.83 E-value=1e-09 Score=91.79 Aligned_cols=64 Identities=13% Similarity=0.184 Sum_probs=28.4
Q ss_pred CCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcc
Q psy10233 107 LPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPC 170 (207)
Q Consensus 107 ~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~ 170 (207)
+++|+.|++++|.+++.........+++|+.|++++|.+++......+..+++|+.|++++|++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 3445555555554433211111133455555555555554332223333445555555555554
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.81 E-value=7.7e-09 Score=74.05 Aligned_cols=111 Identities=11% Similarity=0.137 Sum_probs=62.9
Q ss_pred ccCCCCCEEEeecC-ccccc------cCCccccCCcEEecCCCccccc------cCCCCCCCCcEEEcCCCccCCccc--
Q psy10233 61 DAQTEMRSIYMHHN-LVKVM------ENLSHMQLLDTINLSHNFIEKI------ENLSCLPVLRTLHLSHNRLKTIED-- 125 (207)
Q Consensus 61 ~~l~~L~~L~l~~n-~~~~~------~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~n~i~~~~~-- 125 (207)
...+.|++|++++| .+..- ..+...++|++|++++|.++.. ..+...++|+.|++++|.|.+.+.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 44566777777777 66321 2244556677777777766532 123334566777777776654221
Q ss_pred -cccCCCCCCccEEEc--cCCCCCChh---hHHHhccCCCCcEEEcCCCccc
Q psy10233 126 -IEHLKDCPLLSIVDV--SHNQIEDEE---VIEVFGAMPELRVLTLSHNPCV 171 (207)
Q Consensus 126 -~~~l~~~~~L~~L~l--~~n~l~~~~---~~~~~~~~~~L~~l~l~~n~~~ 171 (207)
...+...++|++|++ ++|.+.+.+ +...+...+.|+.|++++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 123455566667777 666666533 2334445566667777666653
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.70 E-value=3.3e-08 Score=78.08 Aligned_cols=138 Identities=15% Similarity=0.181 Sum_probs=94.4
Q ss_pred ccCCCCCCEEEeecCCccCccCCccCCCCCEEEeecCccccc--cCC--ccccCCcEEecCCC--c------cccc-cCC
Q psy10233 38 LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVM--ENL--SHMQLLDTINLSHN--F------IEKI-ENL 104 (207)
Q Consensus 38 l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~n~~~~~--~~~--~~~~~L~~L~l~~~--~------~~~~-~~~ 104 (207)
+..+++|+.|+++++.-..++.+. +++|++|++..+.+..- ..+ ..+++|+.|+|+.+ . +..+ +.+
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred HhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 357799999999987322344443 89999999999887432 223 36899999998532 1 2122 122
Q ss_pred --CCCCCCcEEEcCCCccCCccc--cccCCCCCCccEEEccCCCCCChhhHHH---hccCCCCcEEEcCCCccccchhh
Q psy10233 105 --SCLPVLRTLHLSHNRLKTIED--IEHLKDCPLLSIVDVSHNQIEDEEVIEV---FGAMPELRVLTLSHNPCVGKIKN 176 (207)
Q Consensus 105 --~~~~~L~~L~l~~n~i~~~~~--~~~l~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~~L~~l~l~~n~~~~~~~~ 176 (207)
..+++|+.|++.+|.+.+... ......+++|++|+++.|.+.+.+.... +..+++|+.|++++|.+++..-.
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 347899999999998764221 1112457899999999999987542222 24578999999999987754333
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.69 E-value=6.7e-09 Score=74.37 Aligned_cols=117 Identities=16% Similarity=0.120 Sum_probs=85.8
Q ss_pred CccccCCcEEecCCC-ccccc------cCCCCCCCCcEEEcCCCccCCccc---cccCCCCCCccEEEccCCCCCChh--
Q psy10233 82 LSHMQLLDTINLSHN-FIEKI------ENLSCLPVLRTLHLSHNRLKTIED---IEHLKDCPLLSIVDVSHNQIEDEE-- 149 (207)
Q Consensus 82 ~~~~~~L~~L~l~~~-~~~~~------~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~~~~L~~L~l~~n~l~~~~-- 149 (207)
+...++|++|++++| .++.. ..+...++|+.|++++|.+.+.+. ...+...++|++|++++|.+.+.+
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 456788999999998 77642 235566889999999998865322 123455678999999999988754
Q ss_pred -hHHHhccCCCCcEEEc--CCCccccchhhHHHHHHHhCCcceeccCcccCH
Q psy10233 150 -VIEVFGAMPELRVLTL--SHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFD 198 (207)
Q Consensus 150 -~~~~~~~~~~L~~l~l--~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~ 198 (207)
+...+...+.|+.|++ ++|.+.+.........+...++|+.|+++...-
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2345566778999999 888887665566666778888999998876543
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.51 E-value=1.2e-07 Score=66.97 Aligned_cols=101 Identities=17% Similarity=0.215 Sum_probs=61.1
Q ss_pred CCcEEecCCCccccc--cCCCCCCCCcEEEcCCCc-cCCccccccCCCC----CCccEEEccCCC-CCChhhHHHhccCC
Q psy10233 87 LLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNR-LKTIEDIEHLKDC----PLLSIVDVSHNQ-IEDEEVIEVFGAMP 158 (207)
Q Consensus 87 ~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~~----~~L~~L~l~~n~-l~~~~~~~~~~~~~ 158 (207)
.|++|+++++.++.. ..+..+++|+.|++++|. +++.+. ..+..+ ++|++|++++|. +++.+ ...+..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcCC
Confidence 455666666555432 345566777777777774 554222 334332 468888888874 77664 44556788
Q ss_pred CCcEEEcCCCccccchhhHHHHHHHhCCcce
Q psy10233 159 ELRVLTLSHNPCVGKIKNYRRMFINLCVNLR 189 (207)
Q Consensus 159 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~ 189 (207)
+|+.|++++++-.++..-....+...+|+++
T Consensus 140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 8888888888744333333334566777775
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.49 E-value=5.1e-07 Score=72.27 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=32.0
Q ss_pred CccCCCCCCEEEeecCCccCccC--CccCCCCCEEEeecCcccccc--CCccccCCcEEecCC
Q psy10233 37 NLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSH 95 (207)
Q Consensus 37 ~l~~l~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~ 95 (207)
.+.++.+|+.+++.+|.+..++. |. ..+|+.+.+..+ ++.++ .|..+++|+.+.+..
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 34566667777776666655532 33 355666666533 33332 355666666666654
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.47 E-value=3e-07 Score=69.42 Aligned_cols=158 Identities=19% Similarity=0.240 Sum_probs=96.8
Q ss_pred HHHHHHhhhcCCccCCCCCCeEEeecCC---C---cCc--cCccCCCCCCEEEeecCCccC---ccCCccCCCCCE--EE
Q psy10233 4 ASLRKICKDNKLYLTPSLNDVLYLHFKG---Y---TVI--ENLEEYTGLKCLWLENNGISK---IENLDAQTEMRS--IY 70 (207)
Q Consensus 4 ~~l~~~c~~~~~~~~~~~~~~l~l~~~~---~---~~~--~~l~~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~--L~ 70 (207)
.....+|.|.++.+++...++.-+...+ . ..+ ..+..++. .+.-+++.-.. +..+...+.|.. ++
T Consensus 72 ~~A~~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~ 149 (267)
T 3rw6_A 72 STASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNID 149 (267)
T ss_dssp HHHHHHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCC
T ss_pred HHHHHHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCcc
Confidence 3445689999999988754442222211 0 001 11111111 12222222222 122444444544 56
Q ss_pred eecCccccccC-----CccccCCcEEecCCCccccccCCC----CCCCCcEEEcCCCccCCccccccCCCCCCccEEEcc
Q psy10233 71 MHHNLVKVMEN-----LSHMQLLDTINLSHNFIEKIENLS----CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVS 141 (207)
Q Consensus 71 l~~n~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~ 141 (207)
++.|....++. ...+++|+.|+|++|.+..++.+. .+++|+.|+|++|.+++......+..+ +|++|+++
T Consensus 150 l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~ 228 (267)
T 3rw6_A 150 VVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLD 228 (267)
T ss_dssp CCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECT
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEcc
Confidence 66675443332 146789999999999998875433 689999999999999887555556655 89999999
Q ss_pred CCCCCCh-----h-hHHHhccCCCCcEEE
Q psy10233 142 HNQIEDE-----E-VIEVFGAMPELRVLT 164 (207)
Q Consensus 142 ~n~l~~~-----~-~~~~~~~~~~L~~l~ 164 (207)
+|.+.+. . ....+..+|+|+.||
T Consensus 229 ~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 229 GNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 9999751 0 134677889999887
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.39 E-value=1.3e-06 Score=69.91 Aligned_cols=86 Identities=9% Similarity=0.124 Sum_probs=56.6
Q ss_pred CCccccCCcEEecCCCccc-----cc--cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHH
Q psy10233 81 NLSHMQLLDTINLSHNFIE-----KI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEV 153 (207)
Q Consensus 81 ~~~~~~~L~~L~l~~~~~~-----~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 153 (207)
.|..|++|+.+.+.++.+. .+ ..+..+++|+.+.+.+ .++.++. ..+..+++|+.+.+..+ ++.. ....
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~-~aF~~c~~L~~l~lp~~-l~~I-~~~a 341 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQ-GLLGGNRKVTQLTIPAN-VTQI-NFSA 341 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECT-TTTTTCCSCCEEEECTT-CCEE-CTTS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhh-hhhcCCCCccEEEECcc-ccEE-cHHh
Confidence 3667777777777776543 23 2466667788877774 3555444 56777788888888554 5543 2456
Q ss_pred hccCCCCcEEEcCCCccc
Q psy10233 154 FGAMPELRVLTLSHNPCV 171 (207)
Q Consensus 154 ~~~~~~L~~l~l~~n~~~ 171 (207)
|..+ +|+.+++.+|...
T Consensus 342 F~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp SSSS-CCCEEEECCSSCC
T ss_pred CCCC-CCCEEEEcCCCCc
Confidence 6777 7888888877654
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.37 E-value=2.1e-07 Score=65.72 Aligned_cols=87 Identities=11% Similarity=0.101 Sum_probs=66.6
Q ss_pred CCCcEEEcCCCccCCccccccCCCCCCccEEEccCCC-CCChhhHHHhccC----CCCcEEEcCCCc-cccchhhHHHHH
Q psy10233 108 PVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ-IEDEEVIEVFGAM----PELRVLTLSHNP-CVGKIKNYRRMF 181 (207)
Q Consensus 108 ~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~----~~L~~l~l~~n~-~~~~~~~~~~~~ 181 (207)
..|+.++++++.+++.+. ..+..+++|++|++++|. +++.. ...+..+ ++|+.|++++|. +++. ... .
T Consensus 61 ~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~g-L~~L~~~~~~~~~L~~L~Ls~C~~ITD~---Gl~-~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEIISCGNVTDK---GII-A 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEEEEESCTTCCHH---HHH-H
T ss_pred ceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHH-HHHHHhcccccCCCCEEEcCCCCcCCHH---HHH-H
Confidence 579999999999877444 677899999999999995 87764 4445553 589999999997 4432 222 3
Q ss_pred HHhCCcceeccCcccCHHh
Q psy10233 182 INLCVNLRHLDDYPVFDKD 200 (207)
Q Consensus 182 ~~~~~~L~~L~~~~~~~~~ 200 (207)
+.+|++|++|+++.+....
T Consensus 135 L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGGCTTCCEEEEESCTTCC
T ss_pred HhcCCCCCEEECCCCCCCC
Confidence 6789999999998876443
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.02 E-value=1.5e-05 Score=57.29 Aligned_cols=107 Identities=12% Similarity=0.171 Sum_probs=53.0
Q ss_pred CCCCCEEEeecC-ccccc------cCCccccCCcEEecCCCccccc--c----CCCCCCCCcEEEcCCCccCCccc---c
Q psy10233 63 QTEMRSIYMHHN-LVKVM------ENLSHMQLLDTINLSHNFIEKI--E----NLSCLPVLRTLHLSHNRLKTIED---I 126 (207)
Q Consensus 63 l~~L~~L~l~~n-~~~~~------~~~~~~~~L~~L~l~~~~~~~~--~----~~~~~~~L~~L~l~~n~i~~~~~---~ 126 (207)
-+.|+.|+++++ .+... ..+..-++|+.|+|++|.++.. . .+..-+.|+.|+|++|.|...+. .
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 355666666654 54321 2234445566666666666532 1 12233556666666666654221 1
Q ss_pred ccCCCCCCccEEEccCC---CCCCh---hhHHHhccCCCCcEEEcCCCc
Q psy10233 127 EHLKDCPLLSIVDVSHN---QIEDE---EVIEVFGAMPELRVLTLSHNP 169 (207)
Q Consensus 127 ~~l~~~~~L~~L~l~~n---~l~~~---~~~~~~~~~~~L~~l~l~~n~ 169 (207)
..+...+.|+.|++++| .+.+. .+.+.+...+.|+.|+++.|.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 23445555666666543 22321 123344455566666665554
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.58 E-value=5.1e-05 Score=54.44 Aligned_cols=117 Identities=14% Similarity=0.092 Sum_probs=82.7
Q ss_pred ccccCCcEEecCCC-ccccc------cCCCCCCCCcEEEcCCCccCCccc---cccCCCCCCccEEEccCCCCCChhhH-
Q psy10233 83 SHMQLLDTINLSHN-FIEKI------ENLSCLPVLRTLHLSHNRLKTIED---IEHLKDCPLLSIVDVSHNQIEDEEVI- 151 (207)
Q Consensus 83 ~~~~~L~~L~l~~~-~~~~~------~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~~~~L~~L~l~~n~l~~~~~~- 151 (207)
..-+.|++|+|+++ .++.. ..+..-..|+.|++++|.+.+.+. ...++..+.|++|+|+.|.|.+.+..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 45677999999985 77542 235566889999999999876332 23456678899999999999875433
Q ss_pred --HHhccCCCCcEEEcCCC---ccccchhhHHHHHHHhCCcceeccCcccCHH
Q psy10233 152 --EVFGAMPELRVLTLSHN---PCVGKIKNYRRMFINLCVNLRHLDDYPVFDK 199 (207)
Q Consensus 152 --~~~~~~~~L~~l~l~~n---~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~ 199 (207)
+.+...+.|+.|++++| .+...........+..-++|..|++......
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 34455668999999865 4454444555667788889998888764433
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.39 E-value=0.0015 Score=51.74 Aligned_cols=124 Identities=16% Similarity=0.232 Sum_probs=83.1
Q ss_pred CCccCCCCCEEEeecCccccc-cCCccccCCcEEecCCCcccccc--CCCCCCCCcEEEcCCCccCCccccccCCCCCCc
Q psy10233 59 NLDAQTEMRSIYMHHNLVKVM-ENLSHMQLLDTINLSHNFIEKIE--NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLL 135 (207)
Q Consensus 59 ~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L 135 (207)
.|..+..|+.+.+..+..... ..|..++.|+.+.+.. .+..++ .+..+.+|+.+.+..+ ++.++. ..+..+.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILD-DAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehH-hHhhCCCCC
Confidence 477788899998876644333 3477888999998864 444443 4777789999998764 455444 678889999
Q ss_pred cEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceeccCc
Q psy10233 136 SIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194 (207)
Q Consensus 136 ~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~ 194 (207)
+.+.+..+ ++.. ....|.+|++|+.+++.++... . . .+..|..|+.+.+.
T Consensus 337 ~~i~ip~s-v~~I-~~~aF~~C~~L~~i~~~~~~~~--~-~----~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 337 ERIAIPSS-VTKI-PESAFSNCTALNNIEYSGSRSQ--W-N----AISTDSGLQNLPVA 386 (394)
T ss_dssp CEEEECTT-CCBC-CGGGGTTCTTCCEEEESSCHHH--H-H----TCBCCCCC------
T ss_pred CEEEECcc-cCEE-hHhHhhCCCCCCEEEECCceee--h-h----hhhccCCCCEEEeC
Confidence 99999755 5554 2567889999999998877521 1 1 24567777776553
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.34 E-value=0.0015 Score=51.84 Aligned_cols=122 Identities=16% Similarity=0.257 Sum_probs=53.6
Q ss_pred CCCCCEEEeecCCccCc--cCCccCCCCCEEEeecCccccc-cCCccccCCcEEecCCCccccccCCCCCCCCcEEEcCC
Q psy10233 41 YTGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLVKVM-ENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSH 117 (207)
Q Consensus 41 l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 117 (207)
...|+.+.+... +..+ ..+..+..++.+.+..+..... ..+..+..++.+......+.. ..+....+|+.+.+..
T Consensus 229 ~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 229 KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLD 306 (394)
T ss_dssp TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECT
T ss_pred cCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc-cccccccccccccccc
Confidence 356666666543 2222 2355666777777765543322 124444555544443332211 1233344444444433
Q ss_pred CccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCC
Q psy10233 118 NRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168 (207)
Q Consensus 118 n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n 168 (207)
+ ++.++. ..+..+.+|+.+++..+ ++.. ....|.+|.+|+.+.+..+
T Consensus 307 ~-i~~I~~-~aF~~c~~L~~i~lp~~-v~~I-~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 307 S-VKFIGE-EAFESCTSLVSIDLPYL-VEEI-GKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp T-CCEECT-TTTTTCTTCCEECCCTT-CCEE-CTTTTTTCTTCCEECCCTT
T ss_pred c-cceech-hhhcCCCCCCEEEeCCc-ccEE-hHHhccCCCCCCEEEECcc
Confidence 2 222222 34444455555555332 3322 1233444555555554433
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.33 E-value=0.0023 Score=50.72 Aligned_cols=142 Identities=13% Similarity=0.186 Sum_probs=92.6
Q ss_pred ccCCCCCCEEEeecCCccCc-cCCccCCCCCEEEeecCccccccCCccccCCcEEecCCCccccc--cCCCCCCCCcEEE
Q psy10233 38 LEEYTGLKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI--ENLSCLPVLRTLH 114 (207)
Q Consensus 38 l~~l~~L~~L~l~~~~l~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~ 114 (207)
+..+..++.+.+..+...-- ..+..+..++.+....+.+. -..+..+.+|+.+.+..+ +..+ ..+..+.+|+.++
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~-~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~ 326 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP-EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSID 326 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC-TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEEC
T ss_pred ccccccceeEEcCCCcceeeccccccccccceeccCceeec-cccccccccccccccccc-cceechhhhcCCCCCCEEE
Confidence 45667788888776543322 34677777888777665321 123667888888888664 4444 2466778888888
Q ss_pred cCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCccccchhhHHHHHHHhCCcceec
Q psy10233 115 LSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHL 191 (207)
Q Consensus 115 l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L 191 (207)
+..+ ++.++. ..+..+.+|+.+.+..+ ++.. ....|.+|++|+.+++..+- . .+.. -+..|.+|+.+
T Consensus 327 lp~~-v~~I~~-~aF~~c~~L~~i~lp~~-l~~I-~~~aF~~C~~L~~i~lp~~~-~-~~~~----~F~~c~~L~~I 393 (394)
T 4fs7_A 327 LPYL-VEEIGK-RSFRGCTSLSNINFPLS-LRKI-GANAFQGCINLKKVELPKRL-E-QYRY----DFEDTTKFKWI 393 (394)
T ss_dssp CCTT-CCEECT-TTTTTCTTCCEECCCTT-CCEE-CTTTBTTCTTCCEEEEEGGG-G-GGGG----GBCTTCEEEEE
T ss_pred eCCc-ccEEhH-HhccCCCCCCEEEECcc-ccEe-hHHHhhCCCCCCEEEECCCC-E-Ehhh----eecCCCCCcEE
Confidence 8654 555444 67888888988888776 5544 25567888889888886552 1 2222 25677777764
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.09 E-value=0.0068 Score=47.60 Aligned_cols=103 Identities=25% Similarity=0.299 Sum_probs=48.3
Q ss_pred CccccCCcEEecCCCccccc--cCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCC
Q psy10233 82 LSHMQLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE 159 (207)
Q Consensus 82 ~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 159 (207)
+..+..|+.+.+..+ ++.+ ..+.....|+.+.+..+ +..++. ..+..+.+|+.+.+..+.++.. ....|.++.+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~-~aF~~c~~L~~i~l~~~~i~~I-~~~aF~~c~~ 311 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPY-LLCSGCSNLTKVVMDNSAIETL-EPRVFMDCVK 311 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECT-TTTTTCTTCCEEEECCTTCCEE-CTTTTTTCTT
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccc-ccccccccccccccccccccee-hhhhhcCCCC
Confidence 445555555555443 2222 12444455555555432 222222 3455556666666655555443 1344555566
Q ss_pred CcEEEcCCCccccchhhHHHHHHHhCCcceeccC
Q psy10233 160 LRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDD 193 (207)
Q Consensus 160 L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~ 193 (207)
|+.+.+..+ +. .+... .+..|.+|+.+.+
T Consensus 312 L~~i~lp~~-l~-~I~~~---aF~~C~~L~~i~i 340 (379)
T 4h09_A 312 LSSVTLPTA-LK-TIQVY---AFKNCKALSTISY 340 (379)
T ss_dssp CCEEECCTT-CC-EECTT---TTTTCTTCCCCCC
T ss_pred CCEEEcCcc-cc-EEHHH---HhhCCCCCCEEEE
Confidence 666665433 21 23322 2445555555554
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.04 E-value=0.0054 Score=48.19 Aligned_cols=124 Identities=16% Similarity=0.239 Sum_probs=86.7
Q ss_pred cCCCCCCEEEeecCCccCc--cCCccCCCCCEEEeecCcccccc--CCccccCCcEEecCCCccccc--cCCCCCCCCcE
Q psy10233 39 EEYTGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLVKVME--NLSHMQLLDTINLSHNFIEKI--ENLSCLPVLRT 112 (207)
Q Consensus 39 ~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~ 112 (207)
....+++.+.+..+ +... ..+..+..|+.+.+..+ ++.++ .+..+.+|+.+.+..+ +..+ ..+..+.+|+.
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 34456666666543 2222 23667788888888766 44332 4678888999988654 4344 34677789999
Q ss_pred EEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCC
Q psy10233 113 LHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168 (207)
Q Consensus 113 L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n 168 (207)
+.+.++.++.++. ..+..+.+|+.+.+..+ ++.. ....|.+|.+|+.+.+..+
T Consensus 291 i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~~I-~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 291 VVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LKTI-QVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCTTCCEECT-TTTTTCTTCCEEECCTT-CCEE-CTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccceehh-hhhcCCCCCCEEEcCcc-ccEE-HHHHhhCCCCCCEEEECCc
Confidence 9998888877655 67889999999999765 5543 2456788899999888655
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.01 E-value=0.0062 Score=48.21 Aligned_cols=106 Identities=14% Similarity=0.330 Sum_probs=75.8
Q ss_pred CCccccCCcEEecCCCcccc-ccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCCChhhHHHhccCCC
Q psy10233 81 NLSHMQLLDTINLSHNFIEK-IENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE 159 (207)
Q Consensus 81 ~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 159 (207)
.|..++.|+.+.+..+.... -..+.....|+.+.+.. .++.++. ..+..+.+|+.+.+..+ ++.. ....|..|.+
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~-~aF~~c~~L~~i~lp~~-v~~I-~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPE-SVFAGCISLKSIDIPEG-ITQI-LDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECT-TTTTTCTTCCEEECCTT-CCEE-CTTTTTTCTT
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCC-cccccCc-eeecCCCCcCEEEeCCc-ccEe-hHhHhhCCCC
Confidence 47788999999887653321 13567778899998864 4555444 67888999999999765 5543 2557788999
Q ss_pred CcEEEcCCCccccchhhHHHHHHHhCCcceeccCcc
Q psy10233 160 LRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195 (207)
Q Consensus 160 L~~l~l~~n~~~~~~~~~~~~~~~~~~~L~~L~~~~ 195 (207)
|+.+.+-.+ +. .+... .+..|.+|+.+++..
T Consensus 336 L~~i~ip~s-v~-~I~~~---aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 336 LERIAIPSS-VT-KIPES---AFSNCTALNNIEYSG 366 (394)
T ss_dssp CCEEEECTT-CC-BCCGG---GGTTCTTCCEEEESS
T ss_pred CCEEEECcc-cC-EEhHh---HhhCCCCCCEEEECC
Confidence 999999755 33 45443 378999999887764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.58 E-value=0.0052 Score=40.89 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=34.2
Q ss_pred EEecCCCccc--cccCCCCCCCCcEEEcCCCccCCccccccCCCCCCccEEEccCCCCC
Q psy10233 90 TINLSHNFIE--KIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE 146 (207)
Q Consensus 90 ~L~l~~~~~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~~~~L~~L~l~~n~l~ 146 (207)
.++.++++++ .+|.- -.++++.|+|++|.|+.++. ..+..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCee
Confidence 5666666666 55421 12457777777777766544 45666667777777777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.57 E-value=0.0062 Score=40.51 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=35.5
Q ss_pred EEEcCCCccC--CccccccCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcCCCcccc
Q psy10233 112 TLHLSHNRLK--TIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVG 172 (207)
Q Consensus 112 ~L~l~~n~i~--~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~~n~~~~ 172 (207)
.++.+++.++ .++. .+ .++++.|+|++|.|+.. ....+..+++|+.|++++|++..
T Consensus 12 ~v~Cs~~~L~~~~vP~--~l--p~~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT--AF--PVDTTELVLTGNNLTAL-PPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCS--CC--CTTCSEEECTTSCCSSC-CTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCC--CC--CcCCCEEECCCCcCCcc-ChhhhhhccccCEEEecCCCeec
Confidence 5666666665 4432 11 13577777777777765 25566677777777777777654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.60 E-value=23 Score=21.79 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=14.9
Q ss_pred cCCCCCCccEEEccCCCCCChhhHHHhccCCCCcEEEcC
Q psy10233 128 HLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLS 166 (207)
Q Consensus 128 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~l~l~ 166 (207)
.+..+.+|+.+.+..+ ++.. ....|..|.+|+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~~-v~~I-g~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLL-YDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCC-CTTSSTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcCCc-hheE-cHHHHhccCCccEEEEc
Confidence 3444444444444433 2221 12233444444444443
Done!