RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10233
(207 letters)
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 46.1 bits (109), Expect = 5e-06
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 9/159 (5%)
Query: 15 LYLTPSLNDVLYLHFKGYTVI-ENLEEYTGLKCLWLENNGISKIENLDAQ-TEMRSIYMH 72
+ L S L L + L LK L L N +S + L + + + ++ +
Sbjct: 135 IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194
Query: 73 HNLVKVMENL-SHMQLLDTINLSHNFIEK-IENLSCLPVLRTLHLSHNRLKTIEDIEHLK 130
N + + + L+ ++LS+N I + + +LS L L L LS+N+L+ + + +
Sbjct: 195 GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES--IG 252
Query: 131 DCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
+ L +D+S+NQI I G++ LR L LS N
Sbjct: 253 NLSNLETLDLSNNQISS---ISSLGSLTNLRELDLSGNS 288
Score = 36.9 bits (85), Expect = 0.006
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 15 LYLTPSLNDVLYLHFKGYTVIENLEEY-TGLKCLWLENNGISK-IENLDAQTEMRSIYMH 72
L +LN+ L L + + E + L+ L L NN I + + +L + + +
Sbjct: 182 LSNLSNLNN-LDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELS 240
Query: 73 HN-LVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTI 123
+N L + E++ ++ L+T++LS+N I I +L L LR L LS N L
Sbjct: 241 NNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNA 292
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 88 LDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEH 128
L+T++LS+N I + LS LP L TL LS N++ + + +
Sbjct: 3 LETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43
Score = 35.9 bits (84), Expect = 6e-04
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE 152
L TL LS+N+ I D+ L + P L +D+S N+I D +
Sbjct: 3 LETLDLSNNQ---ITDLPPLSNLPNLETLDLSGNKITDLSPLS 42
Score = 29.4 bits (67), Expect = 0.13
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 64 TEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLS 105
T + ++ + +N + + LS++ L+T++LS N I + LS
Sbjct: 1 TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLS 42
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENL 60
L L T + L L+ L L N I+ + L
Sbjct: 5 TLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPL 41
Score = 26.7 bits (60), Expect = 1.3
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 135 LSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
L +D+S+NQI D + +P L L LS N
Sbjct: 3 LETLDLSNNQITD---LPPLSNLPNLETLDLSGNK 34
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 39.8 bits (94), Expect = 4e-05
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 88 LDTINLSHNFIEKIENLSC--LPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQI 145
L +++LS+N + I + + LP L+ L LS N L +I E P L +D+S N +
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISP-EAFSGLPSLRSLDLSGNNL 60
Score = 38.7 bits (91), Expect = 1e-04
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
L++L LS+NRL I D K P L ++D+S N + E F +P LR L LS N
Sbjct: 2 LKSLDLSNNRLTVIPD-GAFKGLPNLKVLDLSGNNLTSIS-PEAFSGLPSLRSLDLSGNN 59
Score = 36.4 bits (85), Expect = 6e-04
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 67 RSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRL 120
+S+ + +N + V+ + + L ++LS N + I S LP LR+L LS N L
Sbjct: 3 KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 42.9 bits (101), Expect = 7e-05
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 88 LDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQI 145
L+ ++LS N L L L L LS N+L + E + L C L +D+SHNQ+
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL-SGEIPDELSSCKKLVSLDLSHNQL 535
Query: 146 EDEEVIEVFGAMPELRVLTLSHNPCVGKI-KNYRRMFINLCVNLRH 190
+ + F MP L L LS N G+I KN + + VN+ H
Sbjct: 536 SGQ-IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH 580
Score = 32.5 bits (74), Expect = 0.17
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 84 HMQLLDTINLSHNFI-----EKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV 138
+ + TINLS+N + + I S LR L+LS+N + P L +
Sbjct: 91 RLPYIQTINLSNNQLSGPIPDDIFTTS--SSLRYLNLSNNNFTGSIPRGSI---PNLETL 145
Query: 139 DVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNY 177
D+S+N + E ++ G+ L+VL L N VGKI N
Sbjct: 146 DLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNS 183
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 35.8 bits (83), Expect = 0.009
Identities = 33/162 (20%), Positives = 70/162 (43%), Gaps = 26/162 (16%)
Query: 34 VIENLEEYTGLKCLWLENNGISK-----IENLDAQTEMRSIYMHHNLV------KVMENL 82
+++ L + GL+ L L +N + +E+L + ++ + +++N + + + L
Sbjct: 73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL 132
Query: 83 SHMQL-LDTINLSHNFIEK------IENLSCLPVLRTLHLSHNRLKTIEDIEHL----KD 131
+ L+ + L N +E + L L+ L+L++N + I L K
Sbjct: 133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI-GDAGIRALAEGLKA 191
Query: 132 CPLLSIVDVSHNQIEDEEVI---EVFGAMPELRVLTLSHNPC 170
L ++D+++N + DE E ++ L VL L N
Sbjct: 192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233
Score = 33.1 bits (76), Expect = 0.072
Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 32/141 (22%)
Query: 36 ENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSH 95
E L+ L+ L L NNG+ + E L+ ++ L+ +NL
Sbjct: 187 EGLKANCNLEVLDLNNNGL----------------TDEGASALAETLASLKSLEVLNLGD 230
Query: 96 NFIE-------KIENLSCLPVLRTLHLSHNRLKT---IEDIEHLKDCPLLSIVDVSHNQI 145
N + LS L TL LS N + + E L + L +D+ N+
Sbjct: 231 NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290
Query: 146 EDE------EVIEVFGAMPEL 160
+E E + G E
Sbjct: 291 GEEGAQLLAESLLEPGNELES 311
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 31.7 bits (72), Expect = 0.25
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 81 NLSHMQLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRL 120
++S ++ L +INLS N I +L + L L LS+N
Sbjct: 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
Score = 27.9 bits (62), Expect = 4.5
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 122 TIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKI 174
I + HL+ +++S N I + G++ L VL LS+N G I
Sbjct: 437 DISKLRHLQS------INLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSI 482
>gnl|CDD|197684 smart00365, LRR_SD22, Leucine-rich repeat, SDS22-like subfamily.
Length = 22
Score = 28.0 bits (64), Expect = 0.31
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 42 TGLKCLWLENNGISKIENLD 61
T L+ L L +N I KIENLD
Sbjct: 2 TNLEELDLGDNKIKKIENLD 21
Score = 24.2 bits (54), Expect = 7.1
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 110 LRTLHLSHNRLKTIEDIEH 128
L L L N++K IE+++
Sbjct: 4 LEELDLGDNKIKKIENLDE 22
Score = 24.2 bits (54), Expect = 8.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 88 LDTINLSHNFIEKIENLSC 106
L+ ++L N I+KIENL
Sbjct: 4 LEELDLGDNKIKKIENLDE 22
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 27.3 bits (62), Expect = 0.51
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 107 LPVLRTLHLSHNRLKTIED 125
LP LR L LS+N+L ++
Sbjct: 1 LPNLRELDLSNNQLSSLPP 19
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 27.3 bits (62), Expect = 0.51
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 107 LPVLRTLHLSHNRLKTIED 125
LP LR L LS+N+L ++
Sbjct: 1 LPNLRELDLSNNQLSSLPP 19
>gnl|CDD|238431 cd00851, MTH1175, This uncharacterized conserved protein belongs to
a family of iron-molybdenum cluster-binding proteins
that includes NifX, NifB, and NifY, all of which are
involved in the synthesis of an iron-molybdenum cofactor
(FeMo-co) that binds the active site of the
dinitrogenase enzyme. This domain is a predicted
small-molecule-binding domain (SMBD) with an alpha/beta
fold that is present either as a stand-alone domain
(e.g. NifX and NifY) or fused to another conserved
domain (e.g. NifB) however, its function is still
undetermined.The SCOP database suggests that this domain
is most similar to structures within the ribonuclease H
superfamily. This conserved domain is represented in
two of the three major divisions of life (bacteria and
archaea).
Length = 103
Score = 28.4 bits (64), Expect = 1.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 127 EHLKDCPLLSIVDVSHNQIEDEEVIE 152
H P I DV +I++ EVIE
Sbjct: 16 PHFGRAPYFLIYDVETGKIKNVEVIE 41
>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 464
Score = 29.6 bits (67), Expect = 1.1
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 104 LSCLPVLRTLHLSHNRLKTIEDIEHLKD--CPLLSIVDVSHNQIEDEEVIEVFGAMPE 159
+ CL TL L HN IE I+ + PL ++ D++ ++D+ V ++F ++PE
Sbjct: 66 IDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTL-DLT-TPVKDQFVQDLFASLPE 121
>gnl|CDD|216041 pfam00648, Peptidase_C2, Calpain family cysteine protease.
Length = 302
Score = 28.6 bits (64), Expect = 2.3
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 26 YLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQ 63
Y G + E +E++TG W E NL
Sbjct: 148 YEALSGGSTTEAMEDFTGGVAEWYELKQAPSDLNLFKI 185
>gnl|CDD|179431 PRK02491, PRK02491, putative deoxyribonucleotide triphosphate
pyrophosphatase/unknown domain fusion protein; Reviewed.
Length = 328
Score = 28.2 bits (63), Expect = 3.1
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 162 VLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYP 195
+L + N GK K +R++F L + +L+DYP
Sbjct: 130 ILIATRNE--GKTKEFRKLFGKLGYKVENLNDYP 161
>gnl|CDD|128431 smart00126, IL6, Interleukin-6 homologues. Family includes
granulocyte colony-stimulating factor (G-CSF) and
myelomonocytic growth factor (MGF). IL-6 is also known
as B-cell stimulatory factor 2.
Length = 154
Score = 26.6 bits (59), Expect = 6.8
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 70 YMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENL 104
Y+ + + EN+ +QL DT L +++++L
Sbjct: 72 YLQNEFPENKENVDTLQL-DTKTLIQIIQQEMKDL 105
>gnl|CDD|224350 COG1433, COG1433, Uncharacterized conserved protein [Function
unknown].
Length = 121
Score = 25.8 bits (57), Expect = 9.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 127 EHLKDCPLLSIVDVSHNQIEDEEVIE 152
H P +IVDV +I++ EVIE
Sbjct: 18 PHFGRAPYFTIVDVEDGEIKNVEVIE 43
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.416
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,621,195
Number of extensions: 1003223
Number of successful extensions: 923
Number of sequences better than 10.0: 1
Number of HSP's gapped: 897
Number of HSP's successfully gapped: 42
Length of query: 207
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 115
Effective length of database: 6,857,034
Effective search space: 788558910
Effective search space used: 788558910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)