RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10233
(207 letters)
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 144 bits (366), Expect = 5e-44
Identities = 44/209 (21%), Positives = 82/209 (39%), Gaps = 21/209 (10%)
Query: 1 MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIE-NLEEYTGLKCLWLENNGISKIEN 59
K ++R + + T + L+ ++ L K L L N I KI +
Sbjct: 6 TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS 65
Query: 60 LDAQTEMRSIYMHHNLVKVMENLSHM-QLLDTINLSHNFIEKIENLSCLPVLRTLHLSHN 118
L +R + + NL+K +ENL + L+ + +S+N I + + L LR L++S+N
Sbjct: 66 LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNN 125
Query: 119 RLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYR 178
++ +I+ L L + ++ N + ++ YR
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN-------------------ATSEYR 166
Query: 179 RMFINLCVNLRHLDDYPVFDKDRKCAEAW 207
+ NL+ LD PV +R+ A
Sbjct: 167 IEVVKRLPNLKKLDGMPVDVDEREQANVA 195
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 137 bits (346), Expect = 2e-41
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 3/160 (1%)
Query: 49 LENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH-MQLLDTINLSHNFIEKIENLSCL 107
L I + R + + + V+ENL + D I+ S N I K++ L
Sbjct: 4 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 63
Query: 108 PVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSH 167
L+TL +++NR+ I + + P L+ + +++N + + ++ ++ L L +
Sbjct: 64 RRLKTLLVNNNRICRIGEGLD-QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122
Query: 168 NPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEAW 207
NP K+YR I +R LD V K+R+ AE
Sbjct: 123 NPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKM 161
Score = 62.4 bits (152), Expect = 1e-12
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Query: 92 NLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
L+ IE+ + R L L ++ IE++ +D S N+I +
Sbjct: 3 KLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGAT--LDQFDAIDFSDNEIRK---L 57
Query: 152 EVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+ F + L+ L +++N +I +L L
Sbjct: 58 DGFPLLRRLKTLLVNNN----RICRIGEGLDQALPDLTELI 94
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 110 bits (277), Expect = 4e-31
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Query: 72 HHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKD 131
N K+ + L+ ++L + + + NL LP L+ L LS NR+ D+ K
Sbjct: 35 KSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEK- 93
Query: 132 CPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHL 191
P L+ +++S N+++D +E + L+ L L + + +YR L L +L
Sbjct: 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYL 152
Query: 192 DDYPVFDKDRKCAEA 206
D Y D++ ++A
Sbjct: 153 DGYDREDQEAPDSDA 167
Score = 44.7 bits (106), Expect = 3e-06
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
+R L L + + + + L + + + + + +P+L+ L LS N
Sbjct: 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLELSEN- 81
Query: 170 CVGKIKNYRRMFINLCVNLRHLD 192
+I M NL HL+
Sbjct: 82 ---RIFGGLDMLAEKLPNLTHLN 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 116 bits (292), Expect = 1e-30
Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 6/161 (3%)
Query: 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
L+L+ T I+ L L L+L+ N I + +L +++S+ + HN + + L
Sbjct: 69 KLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLV 128
Query: 84 HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
H+ L+++ L +N I I LS L L TL L N+ I DI L L + +S N
Sbjct: 129 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ---ISDIVPLAGLTKLQNLYLSKN 185
Query: 144 QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINL 184
I D + + L VL L C+ K N++ +
Sbjct: 186 HISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223
Score = 113 bits (284), Expect = 2e-29
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
+ + ++ ++ + L+L N ++ I+ L + +++ N +K + +L
Sbjct: 48 IIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKD 107
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
++ L +++L HN I I L LP L +L+L +N++ I + L L + + NQ
Sbjct: 108 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK---LDTLSLEDNQ 164
Query: 145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
I D I + +L+ L LS N I + R + NL L+
Sbjct: 165 ISD---IVPLAGLTKLQNLYLSKN----HISDLR--ALAGLKNLDVLE 203
Score = 110 bits (275), Expect = 2e-28
Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 12/168 (7%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
L K T E + + N+ I ++ + + ++++ N + ++ L++
Sbjct: 26 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTN 85
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
++ L + L N I+ + +L L L++L L HN I DI L P L + + +N+
Sbjct: 86 LKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNG---ISDINGLVHLPQLESLYLGNNK 142
Query: 145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
I D I V + +L L+L N +I + + L++L
Sbjct: 143 ITD---ITVLSRLTKLDTLSLEDN----QISDIV--PLAGLTKLQNLY 181
Score = 102 bits (254), Expect = 2e-25
Identities = 33/158 (20%), Positives = 66/158 (41%), Gaps = 12/158 (7%)
Query: 35 IENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLS 94
I + + L+ ++ + + I +++ +K ++ + ++ + + L+
Sbjct: 14 IFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLN 73
Query: 95 HNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVF 154
N + I+ L+ L L L L N+ I+D+ LKD L + + HN I D I
Sbjct: 74 GNKLTDIKPLTNLKNLGWLFLDENK---IKDLSSLKDLKKLKSLSLEHNGISD---INGL 127
Query: 155 GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+P+L L L +N KI + ++ L L
Sbjct: 128 VHLPQLESLYLGNN----KITDIT--VLSRLTKLDTLS 159
Score = 92.9 bits (230), Expect = 3e-22
Identities = 30/149 (20%), Positives = 62/149 (41%), Gaps = 12/149 (8%)
Query: 44 LKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIEN 103
+ + I +I DA E + V + + +D I +++ I+ ++
Sbjct: 1 MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG 60
Query: 104 LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVL 163
+ LP + L L+ N+L I+ + +LK+ L + + N+I+D + + +L+ L
Sbjct: 61 IQYLPNVTKLFLNGNKLTDIKPLTNLKN---LGWLFLDENKIKD---LSSLKDLKKLKSL 114
Query: 164 TLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+L HN + I + L L
Sbjct: 115 SLEHNG-ISDING-----LVHLPQLESLY 137
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 111 bits (279), Expect = 5e-30
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 6/161 (3%)
Query: 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
L+L+ T I+ L L L+L+ N + + +L +++S+ + HN + + L
Sbjct: 72 KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131
Query: 84 HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
H+ L+++ L +N I I LS L L TL L N+ I DI L L + +S N
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ---ISDIVPLAGLTKLQNLYLSKN 188
Query: 144 QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINL 184
I D + + L VL L C+ K N++ +
Sbjct: 189 HISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 226
Score = 94.0 bits (234), Expect = 2e-23
Identities = 32/158 (20%), Positives = 67/158 (42%), Gaps = 12/158 (7%)
Query: 35 IENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLS 94
I + + + L+ ++ + + I +++ +K ++ + ++ + + L+
Sbjct: 17 IFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLN 76
Query: 95 HNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVF 154
N + I+ L+ L L L L N+ ++D+ LKD L + + HN I D I
Sbjct: 77 GNKLTDIKPLANLKNLGWLFLDENK---VKDLSSLKDLKKLKSLSLEHNGISD---INGL 130
Query: 155 GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+P+L L L +N KI + ++ L L
Sbjct: 131 VHLPQLESLYLGNN----KITDIT--VLSRLTKLDTLS 162
Score = 86.3 bits (214), Expect = 1e-20
Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 12/146 (8%)
Query: 47 LWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSC 106
I +I + DA E + V + + +D I +++ I+ ++ +
Sbjct: 7 TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQY 66
Query: 107 LPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLS 166
LP + L L+ N+L I+ + +LK+ L + + N+++D + + +L+ L+L
Sbjct: 67 LPNVTKLFLNGNKLTDIKPLANLKN---LGWLFLDENKVKD---LSSLKDLKKLKSLSLE 120
Query: 167 HNPCVGKIKNYRRMFINLCVNLRHLD 192
HN + I + L L
Sbjct: 121 HNG-ISDING-----LVHLPQLESLY 140
Score = 80.5 bits (199), Expect = 2e-18
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 1/128 (0%)
Query: 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
L L G + I L L+ L+L NN I+ I L T++ ++ + N + + L+
Sbjct: 116 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLA 175
Query: 84 HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
+ L + LS N I + L+ L L L L + I H + + + V +
Sbjct: 176 GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC-LNKPINHQSNLVVPNTVKNTDG 234
Query: 144 QIEDEEVI 151
+ E+I
Sbjct: 235 SLVTPEII 242
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 109 bits (274), Expect = 1e-29
Identities = 30/173 (17%), Positives = 70/173 (40%), Gaps = 8/173 (4%)
Query: 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
+ ++ +T LK L L +N IS + L T++ + ++ N +K + +
Sbjct: 45 NFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIP 104
Query: 84 HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
L + L +N + ++L L L L + +N+ ++ I L L ++D+ N
Sbjct: 105 SAC-LSRLFLDNNELRDTDSLIHLKNLEILSIRNNK---LKSIVMLGFLSKLEVLDLHGN 160
Query: 144 QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPV 196
+I + + ++ + L+ CV + + + ++ D +
Sbjct: 161 EITN---TGGLTRLKKVNWIDLTGQKCV-NEPVKYQPELYITNTVKDPDGRWI 209
Score = 102 bits (255), Expect = 7e-27
Identities = 28/145 (19%), Positives = 68/145 (46%), Gaps = 7/145 (4%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
L + T + + +E +G++ +N+ I + + T ++ +++ HN + + L
Sbjct: 24 QNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKD 83
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
+ L+ ++++ N ++ + + L L L +N + D + L L I+ + +N+
Sbjct: 84 LTKLEELSVNRNRLKNLNGIPSAC-LSRLFLDNNE---LRDTDSLIHLKNLEILSIRNNK 139
Query: 145 IEDEEVIEVFGAMPELRVLTLSHNP 169
++ I + G + +L VL L N
Sbjct: 140 LKS---IVMLGFLSKLEVLDLHGNE 161
Score = 97.4 bits (243), Expect = 5e-25
Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 13/158 (8%)
Query: 35 IENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLS 94
+ L ++ + + + +++ ++ ++ + + L ++LS
Sbjct: 12 VFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLS 71
Query: 95 HNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVF 154
HN I + L L L L ++ NRLK + I LS + + +N++ D +
Sbjct: 72 HNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC----LSRLFLDNNELRD---TDSL 124
Query: 155 GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+ L +L++ +N K+K+ + L LD
Sbjct: 125 IHLKNLEILSIRNN----KLKSIV--MLGFLSKLEVLD 156
Score = 83.2 bits (206), Expect = 1e-19
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 7/120 (5%)
Query: 49 LENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLP 108
I+++ + V + + + + N ++ I+ + +
Sbjct: 4 QRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFT 63
Query: 109 VLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
L+ LHLSHN+ I D+ LKD L + V+ N++++ I L L L +N
Sbjct: 64 NLKELHLSHNQ---ISDLSPLKDLTKLEELSVNRNRLKNLNGIP----SACLSRLFLDNN 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 99.4 bits (248), Expect = 6e-27
Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 33 TVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTIN 92
+ + +K L L+N+ ++ + + L+ ++
Sbjct: 8 HLELRNRTPSDVKELVLDNSRSNEGKLE-------------------GLTDEFEELEFLS 48
Query: 93 LSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE 152
+ + I NL L L+ L LS NR+ ++ K CP L+ +++S N+I+D IE
Sbjct: 49 TINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLTHLNLSGNKIKDLSTIE 107
Query: 153 VFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194
+ L+ L L + + +YR L L +LD Y
Sbjct: 108 PLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 102 bits (257), Expect = 1e-26
Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 6/147 (4%)
Query: 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
L L + + +K L L + I+ + L + ++ +Y+ N + + L+
Sbjct: 89 ELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLA 148
Query: 84 HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
+ L +++ + + + L+ L L TL N++ I + L + L V + +N
Sbjct: 149 GLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPN---LIEVHLKNN 205
Query: 144 QIEDEEVIEVFGAMPELRVLTLSHNPC 170
QI D + L ++TL++
Sbjct: 206 QISD---VSPLANTSNLFIVTLTNQTI 229
Score = 100 bits (251), Expect = 7e-26
Identities = 23/144 (15%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
+ T + G+ L G++ IE + + + + N + + L +
Sbjct: 24 IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKN 83
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
+ + + LS N ++ + ++ L ++TL L+ ++ + + L + L ++ + NQ
Sbjct: 84 LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN---LQVLYLDLNQ 140
Query: 145 IEDEEVIEVFGAMPELRVLTLSHN 168
I + I + L+ L++ +
Sbjct: 141 ITN---ISPLAGLTNLQYLSIGNA 161
Score = 94.4 bits (235), Expect = 2e-23
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 3/129 (2%)
Query: 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
L L T + L + L+ L+L+ N I+ I L T ++ + + + V + L+
Sbjct: 111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLA 170
Query: 84 HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
++ L T+ N I I L+ LP L +HL +N+ I D+ L + L IV +++
Sbjct: 171 NLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQ---ISDVSPLANTSNLFIVTLTNQ 227
Query: 144 QIEDEEVIE 152
I ++ V
Sbjct: 228 TITNQPVFY 236
Score = 90.9 bits (226), Expect = 3e-22
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 12/163 (7%)
Query: 30 KGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLD 89
VI + + ++ + ++ V +E + ++ L
Sbjct: 7 TAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLI 66
Query: 90 TINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
+ L N I + L L + L LS N LK + I L+ + +D++ QI D
Sbjct: 67 GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQS---IKTLDLTSTQITD-- 121
Query: 150 VIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+ + L+VL L N +I N + NL++L
Sbjct: 122 -VTPLAGLSNLQVLYLDLN----QITNIS--PLAGLTNLQYLS 157
Score = 79.3 bits (196), Expect = 5e-18
Identities = 18/120 (15%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
Query: 49 LENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLP 108
+ I+ I A I + V + + + T++ + IE + L
Sbjct: 4 TQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLN 63
Query: 109 VLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
L L L N++ + +++L ++ +++S N +++ + + ++ L L+
Sbjct: 64 NLIGLELKDNQITDLAPLKNLTK---ITELELSGNPLKN---VSAIAGLQSIKTLDLTST 117
Score = 73.6 bits (181), Expect = 6e-16
Identities = 24/127 (18%), Positives = 49/127 (38%)
Query: 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
VLYL T I L T L+ L + N +S + L +++ ++ N + + L+
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192
Query: 84 HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
+ L ++L +N I + L+ L + L++ + + + S
Sbjct: 193 SLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGA 252
Query: 144 QIEDEEV 150
I +
Sbjct: 253 PIAPATI 259
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 100 bits (252), Expect = 1e-25
Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 4/145 (2%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
L L++ I L T L N I+ I + T + S+ + +N + + L++
Sbjct: 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLAN 241
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
+ L + + N I I + L L+ L++ N++ I + +L L+ + +++NQ
Sbjct: 242 LSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQ---LNSLFLNNNQ 298
Query: 145 IEDEEVIEVFGAMPELRVLTLSHNP 169
+ +E+ +EV G + L L LS N
Sbjct: 299 LGNED-MEVIGGLTNLTTLFLSQNH 322
Score = 98.0 bits (245), Expect = 1e-24
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 10/169 (5%)
Query: 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
L + + + T L L L N I I L + T + + N + + ++
Sbjct: 159 YLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVA 218
Query: 84 HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
+M L+++ + +N I + L+ L L L + N++ I ++ L L +++V N
Sbjct: 219 NMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTK---LKMLNVGSN 275
Query: 144 QIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
QI D I V + +L L L++N ++ N I NL L
Sbjct: 276 QISD---ISVLNNLSQLNSLFLNNN----QLGNEDMEVIGGLTNLTTLF 317
Score = 96.5 bits (241), Expect = 4e-24
Identities = 28/146 (19%), Positives = 66/146 (45%), Gaps = 7/146 (4%)
Query: 24 VLYLHF-KGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENL 82
L L + + L TGL L + + + + + T++ S+ +++N ++ + L
Sbjct: 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPL 195
Query: 83 SHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSH 142
+ + L N I I ++ + L +L + +N++ + + +L L+ +++
Sbjct: 196 ASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQ---LTWLEIGT 252
Query: 143 NQIEDEEVIEVFGAMPELRVLTLSHN 168
NQI D I + +L++L + N
Sbjct: 253 NQISD---INAVKDLTKLKMLNVGSN 275
Score = 91.8 bits (229), Expect = 2e-22
Identities = 27/144 (18%), Positives = 59/144 (40%), Gaps = 5/144 (3%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
L T + EE + L + ++ I+ ++ T + + ++ N + + LS+
Sbjct: 27 AVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSN 86
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
+ L + + N I I L L LR L+L+ + + I + +L + +++ N
Sbjct: 87 LVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTK---MYSLNLGANH 143
Query: 145 IEDEEVIEVFGAMPELRVLTLSHN 168
+ M L LT++ +
Sbjct: 144 N--LSDLSPLSNMTGLNYLTVTES 165
Score = 91.1 bits (227), Expect = 3e-22
Identities = 27/168 (16%), Positives = 64/168 (38%), Gaps = 11/168 (6%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
L I + L+ ++ + + + + + V ++ + +
Sbjct: 5 LATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEY 64
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
+ L+ +NL+ N I I LS L L L++ N++ I +++L + L + ++ +
Sbjct: 65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTN---LRELYLNEDN 121
Query: 145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
I D I + ++ L L N + + ++ L +L
Sbjct: 122 ISD---ISPLANLTKMYSLNLGANHNLSDLSP-----LSNMTGLNYLT 161
Score = 91.1 bits (227), Expect = 4e-22
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Query: 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENL 82
LY+ T I L+ T L+ L+L + IS I L T+M S+ + N + + L
Sbjct: 92 NLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPL 151
Query: 83 SHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSH 142
S+M L+ + ++ + ++ + ++ L L +L L++N+++ I + L L
Sbjct: 152 SNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS---LHYFTAYV 208
Query: 143 NQIEDEEVIEVFGAMPELRVLTLSHN 168
NQI D I M L L + +N
Sbjct: 209 NQITD---ITPVANMTRLNSLKIGNN 231
Score = 85.7 bits (213), Expect = 3e-20
Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 12/150 (8%)
Query: 43 GLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIE 102
G L I++I E + V + ++ + + ++ + I+
Sbjct: 1 GAATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ 60
Query: 103 NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRV 162
+ L L L+L+ N++ I + +L L+ + + N+I D I + LR
Sbjct: 61 GIEYLTNLEYLNLNGNQITDISPLSNLVK---LTNLYIGTNKITD---ISALQNLTNLRE 114
Query: 163 LTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
L L+ + I + + + L+
Sbjct: 115 LYLNED----NISDIS--PLANLTKMYSLN 138
Score = 78.7 bits (195), Expect = 1e-17
Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
L + T + L + L L + N IS I + T+++ + + N + + L+
Sbjct: 225 SLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLN 284
Query: 84 HMQLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVS 141
++ L+++ L++N + E + L L TL LS N + I + L + D +
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSK---MDSADFA 341
Query: 142 HNQIE 146
+ I+
Sbjct: 342 NQVIK 346
Score = 43.3 bits (103), Expect = 2e-05
Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 33 TVIENLEEYTGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDT 90
+ I L + L L+L NN + E + T + ++++ N + + L+ + +D+
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDS 337
Query: 91 INLSHNFIEK 100
+ ++ I+K
Sbjct: 338 ADFANQVIKK 347
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 100 bits (251), Expect = 5e-25
Identities = 30/162 (18%), Positives = 70/162 (43%), Gaps = 3/162 (1%)
Query: 5 SLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQT 64
+L+ + + EY ++ L L + ++ + +L+
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLL 463
Query: 65 EMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTI 123
+ + + HN L + L+ ++ L+ + S N +E ++ ++ LP L+ L L +NRL+
Sbjct: 464 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS 523
Query: 124 EDIEHLKDCPLLSIVDVSHNQI--EDEEVIEVFGAMPELRVL 163
I+ L CP L ++++ N + E+ + +P + +
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
Score = 96.4 bits (239), Expect = 2e-23
Identities = 26/166 (15%), Positives = 67/166 (40%), Gaps = 12/166 (7%)
Query: 35 IENLEEYTGLKCLWLENNGISK-------IENLDAQTEMRSIYMHHNLVKVMENLSHMQL 87
++ + + + ++R +++ H + V+ +L + L
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL 464
Query: 88 LDTINLSHNFIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE 146
+ ++LSHN + + L+ L L L S N L+ ++ + +L P L + + +N+++
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANL---PRLQELLLCNNRLQ 521
Query: 147 DEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
I+ + P L +L L N + + + + ++ +
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEMLPSVSSIL 566
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 99.3 bits (248), Expect = 1e-24
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 6/153 (3%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
L L + + L T L L L N IS I L T + ++ ++ N ++ + +S+
Sbjct: 248 LDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISN 307
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
++ L + L N I I +S L L+ L +N++ + + +L + ++ + HNQ
Sbjct: 308 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN---INWLSAGHNQ 364
Query: 145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNY 177
I D + + + L L+ NY
Sbjct: 365 ISD---LTPLANLTRITQLGLNDQAWTNAPVNY 394
Score = 97.7 bits (244), Expect = 3e-24
Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 6/145 (4%)
Query: 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
L + + I L + T L+ L NN IS I L T + + ++ N +K + L+
Sbjct: 181 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA 240
Query: 84 HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
+ L ++L++N I + LS L L L L N++ I + L L+ ++++ N
Sbjct: 241 SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA---LTNLELNEN 297
Query: 144 QIEDEEVIEVFGAMPELRVLTLSHN 168
Q+ED I + L LTL N
Sbjct: 298 QLED---ISPISNLKNLTYLTLYFN 319
Score = 89.6 bits (223), Expect = 3e-21
Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 27/186 (14%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
L G I+ +E L + NN ++ I L T++ I M++N + + L++
Sbjct: 51 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLAN 110
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLK-------------- 130
+ L + L +N I I+ L L L L LS N + I + L
Sbjct: 111 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL 170
Query: 131 ----DCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCV 186
+ L +D+S N++ D I V + L L ++N +I + + +
Sbjct: 171 KPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNN----QISDIT--PLGILT 221
Query: 187 NLRHLD 192
NL L
Sbjct: 222 NLDELS 227
Score = 89.3 bits (222), Expect = 4e-21
Identities = 30/173 (17%), Positives = 65/173 (37%), Gaps = 12/173 (6%)
Query: 20 SLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVM 79
L I L ++ + ++ ++ +K +
Sbjct: 2 PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI 61
Query: 80 ENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVD 139
+ + ++ L IN S+N + I L L L + +++N++ I + +L + L+ +
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTN---LTGLT 118
Query: 140 VSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+ +NQI D I+ + L L LS N I + ++ +L+ L
Sbjct: 119 LFNNQITD---IDPLKNLTNLNRLELSSN----TISDIS--ALSGLTSLQQLS 162
Score = 88.5 bits (220), Expect = 6e-21
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 13/168 (7%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
L T + + + L + GI I+ ++ + I +N + + L +
Sbjct: 29 TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKN 88
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
+ L I +++N I I L+ L L L L +N++ I+ +++L + L+ +++S N
Sbjct: 89 LTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN---LNRLELSSNT 145
Query: 145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
I D I + L+ L+ + V +K + L LD
Sbjct: 146 ISD---ISALSGLTSLQQLSFGNQ--VTDLKP-----LANLTTLERLD 183
Score = 78.1 bits (193), Expect = 3e-17
Identities = 22/166 (13%), Positives = 53/166 (31%), Gaps = 24/166 (14%)
Query: 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
L L + I L T L L L N + I + + + ++ N + + +S
Sbjct: 269 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 328
Query: 84 HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
+ L + +N + + +L+ L + L HN++ + + +L ++ + ++
Sbjct: 329 SLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTR---ITQLGLNDQ 385
Query: 144 QIEDEEV---------------------IEVFGAMPELRVLTLSHN 168
+ V ++ N
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWN 431
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 92.3 bits (230), Expect = 1e-23
Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 10/155 (6%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVK--VMENL 82
+ L T + +E +K L + N + + + + + + V + NL
Sbjct: 49 ITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNL 108
Query: 83 SHMQLLDTINLSHNFIE--KIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDV 140
S + L +++SH+ + + ++ LP + ++ LS+N I DI LK P L +++
Sbjct: 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA--ITDIMPLKTLPELKSLNI 166
Query: 141 SHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIK 175
+ + D P+L L +G K
Sbjct: 167 QFDGVHD---YRGIEDFPKLNQLYAFSQT-IGGKK 197
Score = 78.1 bits (193), Expect = 3e-18
Identities = 23/157 (14%), Positives = 59/157 (37%), Gaps = 11/157 (7%)
Query: 36 ENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSH 95
+ Y L + + I + + I + + V + + + + + +++
Sbjct: 20 STFKAYL---NGLLGQSSTANITEAQMNS-LTYITLANINVTDLTGIEYAHNIKDLTINN 75
Query: 96 NFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
+S L L L + + + I +L L+++D+SH+ +D +
Sbjct: 76 IHATNYNPISGLSNLERLRIMGKDVTSD-KIPNLSGLTSLTLLDISHSAHDDSI-LTKIN 133
Query: 156 AMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+P++ + LS+N + I + L+ L+
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-----LKTLPELKSLN 165
Score = 75.8 bits (187), Expect = 2e-17
Identities = 26/131 (19%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGIS--KIENLDAQTEMRSIYMHHNLV--KVM 79
L ++ T + + L+ L + ++ KI NL T + + + H+ ++
Sbjct: 70 DLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129
Query: 80 ENLSHMQLLDTINLSHN-FIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV 138
++ + +++I+LS+N I I L LP L++L++ + + D ++D P L+ +
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG---VHDYRGIEDFPKLNQL 186
Query: 139 DVSHNQIEDEE 149
I ++
Sbjct: 187 YAFSQTIGGKK 197
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 78.8 bits (194), Expect = 3e-17
Identities = 34/182 (18%), Positives = 72/182 (39%), Gaps = 15/182 (8%)
Query: 21 LNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKI---ENLDAQTEMRSIYMHHNLVK 77
L + ++ + ++ ++ N + + +L ++ + HN V+
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586
Query: 78 VMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLL 135
+E L + L +N IE+I + + L SHN+LK I +I + K ++
Sbjct: 587 HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646
Query: 136 SIVDVSHNQIEDEEVIEVFGAMPE-----LRVLTLSHNPCVGKIKNYRRMFINLCVNLRH 190
VD S+N+I E + +M + +TLS+N +I+ + +
Sbjct: 647 GSVDFSYNKIG-SEGRNISCSMDDYKGINASTVTLSYN----EIQKFPTELFATGSPIST 701
Query: 191 LD 192
+
Sbjct: 702 II 703
Score = 62.6 bits (152), Expect = 9e-12
Identities = 30/171 (17%), Positives = 55/171 (32%), Gaps = 22/171 (12%)
Query: 42 TGLKCLWLENNGISKIE-------NLDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTIN 92
+ + N I + ++ + +N ++ E + + TI
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703
Query: 93 LSHNFIEKIEN---------LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
LS+N + I +L T+ L N+L ++ D P LS +DVS+N
Sbjct: 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN 763
Query: 144 QIEDEEVIEVFGAMPELRVLTLSHNPCVG--KIKNYRRMFINLCVNLRHLD 192
+L+ + H +I I C +L L
Sbjct: 764 CF--SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812
Score = 61.4 bits (149), Expect = 2e-11
Identities = 20/144 (13%), Positives = 51/144 (35%), Gaps = 17/144 (11%)
Query: 39 EEYTGLKCLWLENNGISKIEN-LDAQTEMRSIYMHHN--LVKVMENLSHMQLLDTINLSH 95
E ++ + +++ + ++ + L + L ++N++
Sbjct: 465 IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524
Query: 96 NFIEKI-----------ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
N ++ P ++ ++ +N L+ L+ L ++D HN+
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584
Query: 145 IEDEEVIEVFGAMPELRVLTLSHN 168
+ +E FG +L L L +N
Sbjct: 585 V---RHLEAFGTNVKLTDLKLDYN 605
Score = 53.3 bits (128), Expect = 1e-08
Identities = 23/140 (16%), Positives = 54/140 (38%), Gaps = 17/140 (12%)
Query: 42 TGLKCLWLENNGISKI-ENLDAQ--TEMRSIYMHHN----LVKVMENLSHMQLLD---TI 91
L + L N ++ + ++ A + ++ + +N N S ++
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787
Query: 92 NLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
+ N I + ++ P L L + N ++ +++ K P L I+D++ N +
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE----KLTPQLYILDIADNPNISID 843
Query: 150 VIEVFGAMPELRVLTLSHNP 169
V V + E + L ++
Sbjct: 844 VTSVCPYI-EAGMYVLLYDK 862
Score = 44.9 bits (106), Expect = 7e-06
Identities = 24/181 (13%), Positives = 59/181 (32%), Gaps = 36/181 (19%)
Query: 42 TGLKCLWLENNGISKIENL--DAQTEMRSIYMHHNLVKVMEN---LSHMQLLDTINLSHN 96
T LK L + + L D + + +++ L + Q L+ +L +
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406
Query: 97 FIEKIENLSCLPVLRTLHLSH-------NRLKTIEDIEHLKDCPLLSIVDVSHNQIED-- 147
I + + + + L NR+ I + ++ L I+ +++
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFIS--KAIQRLTKLQIIYFANSPFTYDN 464
Query: 148 ----------------EEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHL 191
E + + +L + L + P + ++ + F+ L+ L
Sbjct: 465 IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD----FLYDLPELQSL 520
Query: 192 D 192
+
Sbjct: 521 N 521
Score = 40.2 bits (94), Expect = 3e-04
Identities = 8/90 (8%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Query: 81 NLSHMQLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV 138
+L + + ++L+ + + + L L+ L + + + +
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD-EELTPDMS 376
Query: 139 DVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
+ ++I L + L +
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 77.8 bits (192), Expect = 3e-17
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 7/137 (5%)
Query: 35 IENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLS 94
+ L ++ L +N I+ + E+ + + HN + L + L ++LS
Sbjct: 198 LSTLAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLS 256
Query: 95 HNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE 152
+N +EKI + L L++S+NRL + + + P L ++D+SHN + V
Sbjct: 257 YNELEKIMYHPFVKMQRLERLYISNNRLVALN--LYGQPIPTLKVLDLSHNHL--LHVER 312
Query: 153 VFGAMPELRVLTLSHNP 169
L L L HN
Sbjct: 313 NQPQFDRLENLYLDHNS 329
Score = 72.8 bits (179), Expect = 2e-15
Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 12/151 (7%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101
L + N + L + + HN + V+ +++L + L HN +
Sbjct: 186 PSLFHANVSYN---LLSTLAIPIAVEELDASHNSINVVRGPVNVEL-TILKLQHNNLTDT 241
Query: 102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELR 161
L P L + LS+N L+ I L + +S+N++ +P L+
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNNRLVALN--LYGQPIPTLK 298
Query: 162 VLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
VL LSHN + + R L +L
Sbjct: 299 VLDLSHN----HLLHVERNQPQF-DRLENLY 324
Score = 67.8 bits (166), Expect = 1e-13
Identities = 29/137 (21%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 38 LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINL 93
L+ + ++ L L + I +I+ ++ +YM N ++ + ++ LL + L
Sbjct: 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124
Query: 94 SHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
N + + P L TL +S+N L+ IED + + L + +S N++ +
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD-- 181
Query: 152 EVFGAMPELRVLTLSHN 168
+P L +S+N
Sbjct: 182 --LSLIPSLFHANVSYN 196
Score = 67.8 bits (166), Expect = 1e-13
Identities = 26/133 (19%), Positives = 59/133 (44%), Gaps = 8/133 (6%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
K + +N+ + K+ LD+ ++ + ++ ++ ++ ++ + + + N
Sbjct: 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104
Query: 98 IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
I + +P+L L L N L ++ + P L+ + +S+N +E E + F
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIED-DTFQ 162
Query: 156 AMPELRVLTLSHN 168
A L+ L LS N
Sbjct: 163 ATTSLQNLQLSSN 175
Score = 60.1 bits (146), Expect = 5e-11
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 11/149 (7%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN-LVKVMEN 81
L L T L Y GL + L N + KI + +Y+ +N LV +
Sbjct: 231 LKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 290
Query: 82 LSHMQLLDTINLSHNFIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDV 140
+ L ++LSHN + +E N L L+L HN + T+ L L + +
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL----KLSTHHTLKNLTL 346
Query: 141 SHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
SHN + + +F + +
Sbjct: 347 SHNDWDCNSLRALF---RNVARPAVDDAD 372
Score = 45.8 bits (109), Expect = 3e-06
Identities = 10/90 (11%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 81 NLSHMQLLDTINLSHNFIEKIENLS--CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV 138
NL + + +++ + L + + ++ ++ + L + ++
Sbjct: 16 NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA-ALLDSFRQVELL 74
Query: 139 DVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
+++ QIE+ + F ++ L + N
Sbjct: 75 NLNDLQIEEIDT-YAFAYAHTIQKLYMGFN 103
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 78.2 bits (193), Expect = 3e-17
Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 9/156 (5%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQL----LDTINLSHNF 97
LK L L N S A + + + N + S+ L L ++LS N
Sbjct: 328 PFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387
Query: 98 IEKI-ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
+ N L L+ L H+ LK + + L +D+S+ + + +F
Sbjct: 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD-GIFLG 446
Query: 157 MPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+ L L ++ N + NL LD
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSN---VFANTTNLTFLD 479
Score = 77.0 bits (190), Expect = 8e-17
Identities = 29/173 (16%), Positives = 62/173 (35%), Gaps = 11/173 (6%)
Query: 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
+ L +E++ ++ + L + + + LD ++S+ + N +
Sbjct: 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD-LPFLKSLTLTMNKGSISFKKV 347
Query: 84 HMQLLDTINLSHNFIEKIENLS----CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVD 139
+ L ++LS N + S LR L LS N + + L +D
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS--ANFMGLEELQHLD 405
Query: 140 VSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
H+ ++ F ++ +L L +S+ +F+ L +L L
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG---IFLGL-TSLNTLK 454
Score = 71.2 bits (175), Expect = 9e-15
Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 11/155 (7%)
Query: 44 LKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVMEN---LSHMQLLDTINLSHNFIE 99
L+ L L NG + N E++ + H+ +K + ++ L +++S+ +
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437
Query: 100 KIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
+ L L TL ++ N K + L+ +D+S Q+E VF +
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-GVFDTL 496
Query: 158 PELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
L++L +SHN + N +L LD
Sbjct: 497 HRLQLLNMSHN----NLLFLDSSHYNQLYSLSTLD 527
Score = 67.0 bits (164), Expect = 2e-13
Identities = 26/138 (18%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 41 YTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHN 96
++ L+ L L I IE+ + ++ + N ++ S + L+ +
Sbjct: 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114
Query: 97 FIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE--DEEVIE 152
+ +E+ + L L+ L+++HN + + + + + L VD+S+N I+ ++
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174
Query: 153 VFGAMPE-LRVLTLSHNP 169
P+ L +S NP
Sbjct: 175 FLRENPQVNLSLDMSLNP 192
Score = 62.7 bits (153), Expect = 6e-12
Identities = 24/168 (14%), Positives = 62/168 (36%), Gaps = 14/168 (8%)
Query: 33 TVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSI---YMHHNLVKVMEN--LSHMQL 87
+ N L+ L +++ + ++ A + + + + K+ + +
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449
Query: 88 LDTINLSHNFIEKI---ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
L+T+ ++ N + + L L LS +L+ I L ++++SHN
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-GVFDTLHRLQLLNMSHNN 508
Query: 145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+ + + + L L S N +I+ + + + +L +
Sbjct: 509 LLFLDS-SHYNQLYSLSTLDCSFN----RIETSKGILQHFPKSLAFFN 551
Score = 57.3 bits (139), Expect = 5e-10
Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 23/164 (14%)
Query: 42 TGLKCLWLENNGISKIENLDA----------QTEMRSIYMHHNLVKVMEN--LSHMQLLD 89
GL L NL+ + + + + + +
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288
Query: 90 TINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
++L+ I+ +E++ ++L + +LK + D P L + ++ N+
Sbjct: 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL----DLPFLKSLTLTMNKGSI-- 342
Query: 150 VIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINL-CVNLRHLD 192
A+P L L LS N + +L +LRHLD
Sbjct: 343 -SFKKVALPSLSYLDLSRNALSFSGCC---SYSDLGTNSLRHLD 382
Score = 49.6 bits (119), Expect = 2e-07
Identities = 21/166 (12%), Positives = 61/166 (36%), Gaps = 17/166 (10%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRS---IYMHHNLVKV-----MENLSHMQ-LLDTIN 92
LK L + +N I + + + + + + +N ++ ++ L + +++
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187
Query: 93 LSHNFIEKIENLS-CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
+S N I+ I++ + L L L N + L++ L + + + +DE +
Sbjct: 188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247
Query: 152 E-----VFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
E + + ++ + + + + N+ +
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLT--YTNDFSDDIVKFHCLANVSAMS 291
Score = 48.9 bits (117), Expect = 3e-07
Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRS---IYMHHN-LVKVMEN-LSHMQLLDTINLSHN 96
T L L + N + + + + L ++ + L +N+SHN
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507
Query: 97 FIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQI 145
+ +++ + L L TL S NR++T + L+ ++++N +
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKG-ILQHFPKSLAFFNLTNNSV 557
Score = 38.9 bits (91), Expect = 7e-04
Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 25/112 (22%)
Query: 101 IENLSCLPVLRTLHLSHNRLKTI-----EDIEHL---------------KDCPLLSIVDV 140
+ + T +L + +++ + L +D+
Sbjct: 4 LNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDL 63
Query: 141 SHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
S +IE E + + + L L L+ N I+++ + +L +L
Sbjct: 64 SRCEIETIE-DKAWHGLHHLSNLILTGN----PIQSFSPGSFSGLTSLENLV 110
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 76.2 bits (188), Expect = 7e-17
Identities = 26/133 (19%), Positives = 57/133 (42%), Gaps = 9/133 (6%)
Query: 42 TGLKCLWLENNGISKIENLDAQ--TEMRSIYMHHNLVKVMEN---LSHMQLLDTINLSHN 96
G K ++L NN I+ + +LD + ++ + + N + + + L+ +NL +N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 97 FIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
FI ++ L+TL LS N+L + + ++ + + +N++ + +
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKLAFMG--PEFQSAAGVTWISLRNNKL--VLIEKALRF 235
Query: 157 MPELRVLTLSHNP 169
L L N
Sbjct: 236 SQNLEHFDLRGNG 248
Score = 72.7 bits (179), Expect = 1e-15
Identities = 33/171 (19%), Positives = 67/171 (39%), Gaps = 14/171 (8%)
Query: 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
+L L +LE + L+ L L NN + ++ + +++ +N + + S
Sbjct: 62 LLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG---PSIETLHAANNNISRVS-CS 117
Query: 84 HMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVS 141
Q I L++N I + + C ++ L L N + T+ E L +++
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 142 HNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+N I D ++ +L+ L LS N K+ F + + +
Sbjct: 178 YNFIYD---VKGQVVFAKLKTLDLSSN----KLAFMGPEFQSA-AGVTWIS 220
Score = 62.7 bits (153), Expect = 5e-12
Identities = 26/163 (15%), Positives = 64/163 (39%), Gaps = 21/163 (12%)
Query: 34 VIENLEEYTGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLD 89
+ +N K + ++ + + + ++ + + N + + L+ L+
Sbjct: 5 IKQNGNR---YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 90 TINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
+NLS N + + +L L LRTL L++N ++ + ++ + ++N I
Sbjct: 62 LLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIET------LHAANNNISRVS 115
Query: 150 VIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+ + L++N KI R + +++LD
Sbjct: 116 ----CSRGQGKKNIYLANN----KITMLRDLDEGCRSRVQYLD 150
Score = 50.4 bits (121), Expect = 7e-08
Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 5/122 (4%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEK 100
L+ L L+ N I ++ +++++ + N L + + I+L +N +
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228
Query: 101 IEN-LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED-EEVIEVFGAMP 158
IE L L L N + + V+ ++ E +P
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK--NQRVQTVAKQTVKKLTGQNEEECTVP 286
Query: 159 EL 160
L
Sbjct: 287 TL 288
Score = 28.4 bits (64), Expect = 1.8
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 6/113 (5%)
Query: 36 ENLEEYTGLKCLWLENNGISKIEN-LDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINL 93
+ G+ + L NN + IE L + + N + +
Sbjct: 208 PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267
Query: 94 SHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE 146
+ ++K+ + L H ED+ ++ + H+
Sbjct: 268 AKQTVKKLTGQN-EEECTVPTLGHYGAYCCEDLPAPF---ADRLIALGHHHHH 316
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 76.0 bits (187), Expect = 2e-16
Identities = 24/133 (18%), Positives = 56/133 (42%), Gaps = 9/133 (6%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN---LSHMQLLDTINLSHN 96
G K ++L NN I+ + + ++ ++ + + N + + + L+ +NL +N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 97 FIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
FI ++ L+TL LS N+L + + ++ + + +N++ + +
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKL--VLIEKALRF 235
Query: 157 MPELRVLTLSHNP 169
L L N
Sbjct: 236 SQNLEHFDLRGNG 248
Score = 71.8 bits (176), Expect = 6e-15
Identities = 33/171 (19%), Positives = 67/171 (39%), Gaps = 14/171 (8%)
Query: 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
+L L +LE + L+ L L NN + ++ + +++ +N + + S
Sbjct: 62 LLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG---PSIETLHAANNNISRVS-CS 117
Query: 84 HMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVS 141
Q I L++N I + + C ++ L L N + T+ E L +++
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 142 HNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+N I D ++ +L+ L LS N K+ F + + +
Sbjct: 178 YNFIYD---VKGQVVFAKLKTLDLSSN----KLAFMGPEFQSA-AGVTWIS 220
Score = 63.7 bits (155), Expect = 3e-12
Identities = 25/153 (16%), Positives = 61/153 (39%), Gaps = 18/153 (11%)
Query: 44 LKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIE 99
K + ++ + + + ++ + + N + + L+ L+ +NLS N +
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 100 KIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE 159
+ +L L LRTL L++N ++ + ++ + ++N I
Sbjct: 72 ETLDLESLSTLRTLDLNNNYVQELLVGPSIET------LHAANNNISRVS----CSRGQG 121
Query: 160 LRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+ + L++N KI R + +++LD
Sbjct: 122 KKNIYLANN----KITMLRDLDEGCRSRVQYLD 150
Score = 57.2 bits (138), Expect = 6e-10
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 80 ENLSHMQLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
E + ++ + +++ ++ L LS N L I L L +
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA-ADLAPFTKLEL 62
Query: 138 VDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
+++S N + + ++ LR L L++N
Sbjct: 63 LNLSSNVLYE---TLDLESLSTLRTLDLNNN 90
Score = 52.2 bits (125), Expect = 2e-08
Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 5/131 (3%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEK 100
L+ L L+ N I ++ +++++ + N L + + I+L +N +
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228
Query: 101 IEN-LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE 159
IE L L L N + + V+ ++ +
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK--NQRVQTVAKQTVKKLTG-QNEEECTV 285
Query: 160 LRVLTLSHNPC 170
+ C
Sbjct: 286 PTLGHYGAYCC 296
Score = 40.6 bits (95), Expect = 2e-04
Identities = 22/156 (14%), Positives = 44/156 (28%), Gaps = 9/156 (5%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSI-YMHHNLVKVM--ENLSHMQLLDTINLSHNFI 98
L+ L NG D ++ + + + VK + +N + +
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296
Query: 99 EKIEN--LSCLPVLRTLHLSHNRLK--TIEDIEH-LKDCPLLSIVDVSHNQIEDEEVIEV 153
E + L L+ + + E +E ++ +D Q +V
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVID-QV 355
Query: 154 FGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLR 189
L ++ N RR L L+
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ 391
Score = 37.5 bits (87), Expect = 0.002
Identities = 17/158 (10%), Positives = 35/158 (22%), Gaps = 2/158 (1%)
Query: 13 NKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMH 72
+ L + + L Y C L ++ L +
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322
Query: 73 HNLVKVMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLK 130
++ + I+ + + TL L
Sbjct: 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382
Query: 131 DCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
L + + QIE + E + LR + +
Sbjct: 383 HAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYE 420
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 76.1 bits (187), Expect = 2e-16
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 35 IENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLS 94
+ L ++ L +N I+ + E+ + + HN + L + L ++LS
Sbjct: 204 LSTLAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLS 262
Query: 95 HNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE 152
+N +EKI + L L++S+NRL + + + P L ++D+SHN + V
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRLVALN--LYGQPIPTLKVLDLSHNHL--LHVER 318
Query: 153 VFGAMPELRVLTLSHN 168
L L L HN
Sbjct: 319 NQPQFDRLENLYLDHN 334
Score = 71.5 bits (175), Expect = 8e-15
Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 12/151 (7%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101
L + N +S + + + HN + V+ +++L + L HN +
Sbjct: 192 PSLFHANVSYNLLSTLAIP---IAVEELDASHNSINVVRGPVNVEL-TILKLQHNNLTDT 247
Query: 102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELR 161
L P L + LS+N L+ I L + +S+N++ +P L+
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNNRLVALN--LYGQPIPTLK 304
Query: 162 VLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
VL LSHN + + R L +L
Sbjct: 305 VLDLSHN----HLLHVERNQPQF-DRLENLY 330
Score = 68.8 bits (168), Expect = 6e-14
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIE 99
L L L++N ++ L + + + +N ++ + MQ L+ + +S+N +
Sbjct: 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291
Query: 100 KIEN-LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP 158
+ +P L+ L LSHN L +E + L + + HN I +
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLLHVE--RNQPQFDRLENLYLDHNSIVTLK----LSTHH 345
Query: 159 ELRVLTLSHNP 169
L+ LTLSHN
Sbjct: 346 TLKNLTLSHND 356
Score = 67.3 bits (164), Expect = 2e-13
Identities = 29/137 (21%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 38 LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINL 93
L+ + ++ L L + I +I+ ++ +YM N ++ + ++ LL + L
Sbjct: 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130
Query: 94 SHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
N + + P L TL +S+N L+ IED + + L + +S N++ +
Sbjct: 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTH---V 186
Query: 152 EVFGAMPELRVLTLSHN 168
+ +P L +S+N
Sbjct: 187 D-LSLIPSLFHANVSYN 202
Score = 66.5 bits (162), Expect = 4e-13
Identities = 26/133 (19%), Positives = 59/133 (44%), Gaps = 8/133 (6%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
K + +N+ + K+ LD+ ++ + ++ ++ ++ ++ + + + N
Sbjct: 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 110
Query: 98 IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
I + +P+L L L N L ++ + P L+ + +S+N +E E + F
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIED-DTFQ 168
Query: 156 AMPELRVLTLSHN 168
A L+ L LS N
Sbjct: 169 ATTSLQNLQLSSN 181
Score = 58.4 bits (141), Expect = 2e-10
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 8/148 (5%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN-LVKVMEN 81
L L T L Y GL + L N + KI + +Y+ +N LV +
Sbjct: 237 LKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 296
Query: 82 LSHMQLLDTINLSHNFIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDV 140
+ L ++LSHN + +E N L L+L HN + T+ L L + +
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL----KLSTHHTLKNLTL 352
Query: 141 SHNQIEDEEVIEVFGAMPELRVLTLSHN 168
SHN + + +F + V +
Sbjct: 353 SHNDWDCNSLRALFRNVARPAVDDADQH 380
Score = 45.3 bits (107), Expect = 5e-06
Identities = 10/90 (11%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 81 NLSHMQLLDTINLSHNFIEKIENLS--CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIV 138
NL + + +++ + L + + ++ ++ + L + ++
Sbjct: 22 NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA-ALLDSFRQVELL 80
Query: 139 DVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
+++ QIE+ + F ++ L + N
Sbjct: 81 NLNDLQIEEIDT-YAFAYAHTIQKLYMGFN 109
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 74.7 bits (184), Expect = 3e-16
Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 21/163 (12%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVME-------NLSHMQLLDTIN 92
+ L LE+N + + + D T++ + + N + + ++ LD
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD--- 84
Query: 93 LSHNFIEKI-ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
LS N + + N L L L H+ LK + + L +D+SH V
Sbjct: 85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT---RVA 141
Query: 152 --EVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+F + L VL ++ N +F L NL LD
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPD--IFTEL-RNLTFLD 181
Score = 61.6 bits (150), Expect = 1e-11
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 11/157 (7%)
Query: 42 TGLKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVMENLS---HMQLLDTINLSHNF 97
T LK L L NG+ + N ++ + H+ +K M S ++ L +++SH
Sbjct: 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137
Query: 98 IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
N + L L L ++ N + + + L+ +D+S Q+E F
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFN 196
Query: 156 AMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
++ L+VL +SHN + +L+ LD
Sbjct: 197 SLSSLQVLNMSHN----NFFSLDTFPYKCLNSLQVLD 229
Score = 48.9 bits (117), Expect = 2e-07
Identities = 18/111 (16%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 42 TGLKCLWLENNGISKI---ENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHN 96
+ L+ L + N + + + + + ++ + + + L +N+SHN
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 97 FIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQI 145
++ CL L+ L S N + T + E L+ ++++ N
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 75.1 bits (185), Expect = 4e-16
Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 10/155 (6%)
Query: 44 LKCLWLENNGISKIEN--LDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEK 100
++ + L+ + I + + ++ + + L ++ L + L + LS N E
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN 315
Query: 101 IENLSC--LPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED-EEVIEVFGAM 157
+ +S P L L + N + L++ L +D+SH+ IE + +
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375
Query: 158 PELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
L+ L LS+N + + + C L LD
Sbjct: 376 SHLQSLNLSYN----EPLSLKTEAFKECPQLELLD 406
Score = 68.9 bits (169), Expect = 5e-14
Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 11/160 (6%)
Query: 42 TGLKCLWLENNGISKIENLDAQ---TEMRSIYMHHNLVKVME----NLSHMQLLDTINLS 94
L L ++ N +R + + H+ ++ + L ++ L ++NLS
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384
Query: 95 HNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE 152
+N ++ P L L L+ RLK + ++ LL ++++SH+ ++ +
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS-EQ 443
Query: 153 VFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+F +P L+ L L N L L L
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL-GRLEILV 482
Score = 65.4 bits (160), Expect = 7e-13
Identities = 27/142 (19%), Positives = 49/142 (34%), Gaps = 10/142 (7%)
Query: 36 ENLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTI 91
L L L I I +Q + ++ + N + M LS + L +
Sbjct: 51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110
Query: 92 NLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
I I+ L L +L+L N + +I+ L ++D +N I
Sbjct: 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLS 169
Query: 150 VIEVFGAMPELRVLTL--SHNP 169
E ++ + L+L + N
Sbjct: 170 K-EDMSSLQQATNLSLNLNGND 190
Score = 59.3 bits (144), Expect = 1e-10
Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 16/155 (10%)
Query: 47 LWLENNGISKIE-NLDAQTEMRSIYMHHN--LVKVMENLSHMQL--LDTINLSHNFIEKI 101
L L N I+ IE +S+ L+ + + L + + L E I
Sbjct: 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243
Query: 102 ENLS----CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
C + +++L + I L +D++ + E+ +
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISS-NTFHCFSGLQELDLTATHL--SELPSGLVGL 300
Query: 158 PELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
L+ L LS N K +N ++ + +L HL
Sbjct: 301 STLKKLVLSAN----KFENLCQISASNFPSLTHLS 331
Score = 58.1 bits (141), Expect = 2e-10
Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 13/137 (9%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
LK L+ GIS I+ L Q + S+Y+ N + ++ + L ++ +N
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164
Query: 98 IEKIE-----NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE 152
I + +L L +L+L+ N + IE D + ++ Q
Sbjct: 165 IHYLSKEDMSSLQQATNL-SLNLNGNDIAGIEP--GAFDSAVFQSLNFGGTQNLLVIFKG 221
Query: 153 -VFGAMPELRVLTLSHN 168
+ L + T
Sbjct: 222 LKNSTIQSLWLGTFEDM 238
Score = 56.6 bits (137), Expect = 8e-10
Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 17/161 (10%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRS---IYMHHNLVKVMEN--LSHMQLLDTINLSHN 96
L+ L L + + + + + H+L+ + + L +NL N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Query: 97 FIEKI-----ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
K +L L L L LS L +I+ +++ VD+SHN++ +
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ-HAFTSLKMMNHVDLSHNRLTSSSI- 517
Query: 152 EVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
E + + L L+ N I + + R ++
Sbjct: 518 EALSHLKGI-YLNLASN----HISIILPSLLPILSQQRTIN 553
Score = 56.2 bits (136), Expect = 1e-09
Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 10/124 (8%)
Query: 71 MHHNLVKVMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEH 128
+ L ++ L + + + S N + I+N S L L L L+ ++ I + +
Sbjct: 20 ENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DT 76
Query: 129 LKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNL 188
+ L + ++ N + L+ L I + + ++ L
Sbjct: 77 FQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLFFIQT----GISSIDFIPLHNQKTL 131
Query: 189 RHLD 192
L
Sbjct: 132 ESLY 135
Score = 45.8 bits (109), Expect = 4e-06
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 13/134 (9%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVM--ENLSHMQLLDTINLSHNF 97
L+ L L +S I+ + M + + HN + E LSH++ + +NL+ N
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534
Query: 98 IEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
I I L L RT++L N L L + ++ED E +
Sbjct: 535 ISIILPSLLPILSQQRTINLRQNPLDCTCSNI-----YFLEWYKENMQKLEDTEDT-LCE 588
Query: 156 AMPELRVLTLSHNP 169
P LR + LS
Sbjct: 589 NPPLLRGVRLSDVT 602
Score = 38.5 bits (90), Expect = 0.001
Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 25/108 (23%)
Query: 105 SCLPVLRTLHLSHNRLKTI-----EDIEHL---------------KDCPLLSIVDVSHNQ 144
V +T + + L I E L L+ +D++ Q
Sbjct: 9 IEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ 68
Query: 145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
I + F + L L L+ N + ++ L+HL
Sbjct: 69 IYWIHE-DTFQSQHRLDTLVLTAN----PLIFMAETALSGPKALKHLF 111
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 73.9 bits (182), Expect = 6e-16
Identities = 24/138 (17%), Positives = 57/138 (41%), Gaps = 11/138 (7%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
L L L+ N I+K++ L + + + N + ++N L++ L ++L++N
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 98 IEKI-ENLSCLPVLRTLHLSHNRLKTIED-----IEHLKDCPLLSIVDVSHNQIEDEEVI 151
+ K+ L+ ++ ++L +N + I + S V + N ++ E+
Sbjct: 252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311
Query: 152 E-VFGAMPELRVLTLSHN 168
F + + L +
Sbjct: 312 PSTFRCVYVRAAVQLGNY 329
Score = 69.3 bits (170), Expect = 2e-14
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 12/137 (8%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMEN-LSHMQLLDTINLSHNFIE 99
L + + + I+ I + +++ N + KV L + L + LS N I
Sbjct: 171 KKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 100 KIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE-----DEEVIE 152
++N L+ P LR LHL++N+L + L D + +V + +N I D
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLVKVP--GGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287
Query: 153 VFGAMPELRVLTLSHNP 169
++L NP
Sbjct: 288 YNTKKASYSGVSLFSNP 304
Score = 65.4 bits (160), Expect = 5e-13
Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 32/157 (20%)
Query: 42 TGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLVKV----------MENLSHMQL-- 87
L+ L + N I+K+ + +M + + N +K M+ LS++++
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180
Query: 88 -------------LDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDC 132
L ++L N I K++ L L L L LS N + +++ L +
Sbjct: 181 TNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANT 239
Query: 133 PLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
P L + +++N++ +V ++V+ L +N
Sbjct: 240 PHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNN 274
Score = 61.2 bits (149), Expect = 1e-11
Identities = 23/156 (14%), Positives = 60/156 (38%), Gaps = 14/156 (8%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
L L+NN I++I++ + ++ + +N + + + + L+ + LS N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 98 IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE-VFGA 156
++++ L+ L + N + + + +V++ N ++ + F
Sbjct: 112 LKELPE-KMPKTLQELRVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Query: 157 MPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
M +L + ++ N + L +L L
Sbjct: 170 MKKLSYIRIADT-------NITTIPQGLPPSLTELH 198
Score = 57.7 bits (140), Expect = 3e-10
Identities = 42/179 (23%), Positives = 64/179 (35%), Gaps = 22/179 (12%)
Query: 24 VLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVM 79
+L L T I++ + L L L NN ISKI ++ +Y+ N +K +
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 80 EN--LSHMQLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEH--LKDCP 133
+Q L + N I K+ + L + + L N L IE+ +
Sbjct: 116 PEKMPKTLQELR---VHENEITKVRKSVFNGLNQMIVVELGTNPL-KSSGIENGAFQGMK 171
Query: 134 LLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
LS + ++ I I G P L L L N KI + NL L
Sbjct: 172 KLSYIRIADTNITT---IPQ-GLPPSLTELHLDGN----KITKVDAASLKGLNNLAKLG 222
Score = 46.5 bits (111), Expect = 1e-06
Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 37/119 (31%)
Query: 38 LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLS 94
L+ L L L N IS ++N L +R +++++N LVKV L+ + + + L
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271
Query: 95 HNFIEKIEN----------------------------------LSCLPVLRTLHLSHNR 119
+N I I + C+ V + L + +
Sbjct: 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 74.0 bits (182), Expect = 9e-16
Identities = 34/177 (19%), Positives = 67/177 (37%), Gaps = 14/177 (7%)
Query: 24 VLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVM 79
+L L + + L+ L L N +S +E + +R++ + N +K++
Sbjct: 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95
Query: 80 EN--LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLL 135
+ + L +++S N I + + L L++L + N L I L
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSL 154
Query: 136 SIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+ + + E + L VL L H + I++Y F L L+ L+
Sbjct: 155 EQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLN-INAIRDY--SFKRL-YRLKVLE 206
Score = 67.8 bits (166), Expect = 1e-13
Identities = 34/156 (21%), Positives = 57/156 (36%), Gaps = 14/156 (8%)
Query: 44 LKCLWLENNGISKIEN--LDAQTEMRSIYMHHN-LVKVMEN-LSHMQLLDTINLSHNFIE 99
L L + N I + + ++S+ + N LV + S + L+ + L +
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165
Query: 100 KIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
I LS L L L L H + I D K L ++++SH D
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHWPYLDTMTPNCLY-G 223
Query: 158 PELRVLTLSHNPCVGKIKNY-RRMFINLCVNLRHLD 192
L L+++H + +L V LR L+
Sbjct: 224 LNLTSLSITHC----NLTAVPYLAVRHL-VYLRFLN 254
Score = 67.4 bits (165), Expect = 2e-13
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 13/151 (8%)
Query: 47 LWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIEN 103
+ + E + +T R + + N +K + + L+ + L+ N + +E
Sbjct: 16 VLCHRKRFVAVPEGIPTET--RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73
Query: 104 --LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELR 161
+ L LRTL L NRLK I L+ +D+S N+I +F + L+
Sbjct: 74 GAFNNLFNLRTLGLRSNRLKLIPL-GVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLK 131
Query: 162 VLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
L + N + I + R F L +L L
Sbjct: 132 SLEVGDND-LVYISH--RAFSGL-NSLEQLT 158
Score = 65.1 bits (159), Expect = 9e-13
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 8/133 (6%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN--LVKVMENLSHMQLLDTINLSHNF 97
GL L L + I+ I + ++ + + H L + N + L +++++H
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235
Query: 98 IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
+ + + L LR L+LS+N + TIE L + L + + Q+ E F
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEG-SMLHELLRLQEIQLVGGQLAVVEP-YAFR 293
Query: 156 AMPELRVLTLSHN 168
+ LRVL +S N
Sbjct: 294 GLNYLRVLNVSGN 306
Score = 45.5 bits (108), Expect = 4e-06
Identities = 29/134 (21%), Positives = 41/134 (30%), Gaps = 48/134 (35%)
Query: 38 LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
+ L+ L L N IS IE L + L I L
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEG--------------------SMLHELLRLQEIQLVGGQ 283
Query: 98 IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
+ +E L LR L++S N+L T+E+ VF
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEE--------------------------SVFH 317
Query: 156 AMPELRVLTLSHNP 169
++ L L L NP
Sbjct: 318 SVGNLETLILDSNP 331
Score = 35.5 bits (82), Expect = 0.010
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 27/109 (24%)
Query: 105 SCLPVLRTLHLSHNRLKTI-----EDIEHL---------------KDCPLLSIVDVSHNQ 144
C R + R + + L P L ++++ N
Sbjct: 8 ECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67
Query: 145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN-YRRMFINLCVNLRHLD 192
+ E F + LR L L N ++K +F L NL LD
Sbjct: 68 VSAVEP-GAFNNLFNLRTLGLRSN----RLKLIPLGVFTGL-SNLTKLD 110
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 73.1 bits (180), Expect = 1e-15
Identities = 26/138 (18%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
L L L++N I IE L +++ + + HN ++++EN LS + L ++L +N
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252
Query: 98 IEKI-ENLSCLPVLRTLHLSHNRLKTIE-----DIEHLKDCPLLSIVDVSHNQIEDEEVI 151
+ ++ L L +L+ ++L N + + + + + + +N + EV
Sbjct: 253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312
Query: 152 E-VFGAMPELRVLTLSHN 168
F + + + +
Sbjct: 313 PATFRCVTDRLAIQFGNY 330
Score = 67.3 bits (165), Expect = 1e-13
Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 14/158 (8%)
Query: 44 LKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKI 101
L L + ++ I D + +++ HN ++ +E L L + L HN I I
Sbjct: 174 LNYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232
Query: 102 EN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEV-----IEVF 154
EN LS LP LR LHL +N+L + L D LL +V + N I V +
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLSRVP--AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290
Query: 155 GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
++L +NP V + F + + +
Sbjct: 291 VKRAYYNGISLFNNP-VPYWEVQPATFRCVT-DRLAIQ 326
Score = 65.8 bits (161), Expect = 4e-13
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 31/156 (19%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVME--------------NLSHM 85
+ L L + +N I K+ M I M N ++ +S
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182
Query: 86 QL----------LDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCP 133
+L L+ ++L HN I+ IE L L L L HN+++ IE+ L P
Sbjct: 183 KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLP 241
Query: 134 LLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
L + + +N++ V + L+V+ L N
Sbjct: 242 TLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNN 275
Score = 54.6 bits (132), Expect = 3e-09
Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 37/180 (20%)
Query: 41 YTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN-LVKVMENL-SHMQLLDTINLSHN 96
L L L NN ISKI +++ +Y+ N LV++ NL S + L + N
Sbjct: 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR---IHDN 133
Query: 97 FIEKIEN--LSCLPVLRTLHLSHNRLK--TIED---------IEHLKDCPL--------- 134
I K+ S L + + + N L+ E + + L
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE 193
Query: 135 -LSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN-YRRMFINLCVNLRHLD 192
L+ + + HN+I+ E+ E +L L L HN +I+ L LR L
Sbjct: 194 TLNELHLDHNKIQAIEL-EDLLRYSKLYRLGLGHN----QIRMIENGSLSFL-PTLRELH 247
Score = 53.9 bits (130), Expect = 5e-09
Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 12/131 (9%)
Query: 44 LKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEK 100
L+ + + G+ + + + T + + +N + + +Q L + L +N I K
Sbjct: 35 LRVVQCSDLGLKAVPKEISPDT--TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 101 IEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP 158
I S L L+ L++S N L I L + + N+I VF +
Sbjct: 93 IHEKAFSPLRKLQKLYISKNHLVEIPP-NLPSS---LVELRIHDNRIRKVPK-GVFSGLR 147
Query: 159 ELRVLTLSHNP 169
+ + + NP
Sbjct: 148 NMNCIEMGGNP 158
Score = 45.8 bits (109), Expect = 3e-06
Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 37/119 (31%)
Query: 38 LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLS 94
L Y+ L L L +N I IEN L +R +++ +N L +V L ++LL + L
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH 272
Query: 95 HNFIEKIEN----------------------------------LSCLPVLRTLHLSHNR 119
N I K+ C+ + + +
Sbjct: 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 71.3 bits (175), Expect = 6e-15
Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 17/178 (9%)
Query: 24 VLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVM 79
+L LH +I+ + L+ L L N I IE + + ++ + N + +
Sbjct: 68 LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI 127
Query: 80 EN--LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSH-NRLKTIEDIEHLKDCPL 134
N ++ L + L +N IE I + + +P LR L L RL I + +
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSN 186
Query: 135 LSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
L ++++ + + I + +L L LS N + I+ F L ++L+ L
Sbjct: 187 LRYLNLAMCNLRE---IPNLTPLIKLDELDLSGNH-LSAIR--PGSFQGL-MHLQKLW 237
Score = 70.5 bits (173), Expect = 1e-14
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN--LVKVMEN-LSHMQLLDTINLSHN 96
+ LK LWL NN I I + + +R + + L + E + L +NL+
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195
Query: 97 FIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
+ +I NL+ L L L LS N L I + L + + +QI+ E F
Sbjct: 196 NLREIPNLTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQVIER-NAFDN 253
Query: 157 MPELRVLTLSHN 168
+ L + L+HN
Sbjct: 254 LQSLVEINLAHN 265
Score = 64.8 bits (158), Expect = 1e-12
Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 30/132 (22%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIE 99
+ L+ L L + +I NL ++ + + N + + + L + + + I+
Sbjct: 185 SNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244
Query: 100 KIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
IE L L ++L+HN L + ++F +
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLTLLPH--------------------------DLFTPL 278
Query: 158 PELRVLTLSHNP 169
L + L HNP
Sbjct: 279 HHLERIHLHHNP 290
Score = 64.4 bits (157), Expect = 2e-12
Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 15/158 (9%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
T + L L N I I+ + + + N ++ +E + + L+T+ L N
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 98 IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSH-NQIEDEEVIEVF 154
+ I N L L+ L L +N +++I P L +D+ ++ F
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYISE-GAF 181
Query: 155 GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+ LR L L+ ++ L + L LD
Sbjct: 182 EGLSNLRYLNLAMC----NLREI-PNLTPL-IKLDELD 213
Score = 34.3 bits (79), Expect = 0.023
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 105 SCLPVLRTLHLSHNRLKTI-EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVL 163
SC + L+ + + I ++++ NQI+ +V F + L +L
Sbjct: 40 SCSNQFSKVICVRKNLREVPDGIS-----TNTRLLNLHENQIQIIKV-NSFKHLRHLEIL 93
Query: 164 TLSHNPCVGKIKN-YRRMFINLCVNLRHLD 192
LS N I+ F L NL L+
Sbjct: 94 QLSRN----HIRTIEIGAFNGL-ANLNTLE 118
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 71.3 bits (175), Expect = 7e-15
Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 7/133 (5%)
Query: 42 TGLKCLWL-ENNGISKIEN--LDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFI 98
L L L E + I + ++ + + +K M NL+ + L+ + +S N
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF 230
Query: 99 EKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
+I L L+ L + ++++ IE L ++++HN + ++F
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNLSSLPH-DLFTP 288
Query: 157 MPELRVLTLSHNP 169
+ L L L HNP
Sbjct: 289 LRYLVELHLHHNP 301
Score = 70.9 bits (174), Expect = 9e-15
Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 17/178 (9%)
Query: 24 VLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVM 79
L L +I+ L+ L L N I +IE + + ++ + N + V+
Sbjct: 79 YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI 138
Query: 80 EN--LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSH-NRLKTIEDIEHLKDCPL 134
+ ++ L + L +N IE I + + +P L L L +L+ I + +
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFN 197
Query: 135 LSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
L +++ I+D + + L L +S N +I+ F L +L+ L
Sbjct: 198 LKYLNLGMCNIKD---MPNLTPLVGLEELEMSGNH-FPEIR--PGSFHGL-SSLKKLW 248
Score = 67.5 bits (165), Expect = 2e-13
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 7/132 (5%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN--LVKVMEN-LSHMQLLDTINLSHN 96
+ L+ LWL NN I I + + + + + L + E + L +NL
Sbjct: 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206
Query: 97 FIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
I+ + NL+ L L L +S N I L + V ++Q+ E F
Sbjct: 207 NIKDMPNLTPLVGLEELEMSGNHFPEIRP-GSFHGLSSLKKLWVMNSQVSLIER-NAFDG 264
Query: 157 MPELRVLTLSHN 168
+ L L L+HN
Sbjct: 265 LASLVELNLAHN 276
Score = 65.9 bits (161), Expect = 5e-13
Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 15/158 (9%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
+ + L L N I I+ + + + N ++ +E + + L+T+ L N+
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 98 IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSH-NQIEDEEVIEVF 154
+ I + L LR L L +N +++I P L +D+ ++E F
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYISE-GAF 192
Query: 155 GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+ L+ L L IK+ L V L L+
Sbjct: 193 EGLFNLKYLNLGMC----NIKDM-PNLTPL-VGLEELE 224
Score = 57.8 bits (140), Expect = 3e-10
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 16/126 (12%)
Query: 72 HHNLVKVMENL-SHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEH 128
L +V + + S+ + L+ L N I+ I+ L L L L N ++ IE
Sbjct: 63 RRGLSEVPQGIPSNTRYLN---LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV-GA 118
Query: 129 LKDCPLLSIVDVSHNQIEDEEVIE--VFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCV 186
L+ +++ N + VI F + +LR L L +NP + I +Y F +
Sbjct: 119 FNGLASLNTLELFDNWL---TVIPSGAFEYLSKLRELWLRNNP-IESIPSY--AFNRV-P 171
Query: 187 NLRHLD 192
+L LD
Sbjct: 172 SLMRLD 177
Score = 35.1 bits (81), Expect = 0.013
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 21/94 (22%)
Query: 105 SCLPVLRTLHLSHNRLKTI-----EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE 159
SC + + L + + +L ++ N I+ + + F +
Sbjct: 51 SCSNQFSKVVCTRRGLSEVPQGIPSNTRYL---------NLMENNIQMIQA-DTFRHLHH 100
Query: 160 LRVLTLSHNPCVGKIKN-YRRMFINLCVNLRHLD 192
L VL L N I+ F L +L L+
Sbjct: 101 LEVLQLGRN----SIRQIEVGAFNGL-ASLNTLE 129
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 71.2 bits (175), Expect = 8e-15
Identities = 33/202 (16%), Positives = 70/202 (34%), Gaps = 31/202 (15%)
Query: 16 YLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHN- 74
LT + YL + +I+ T + L + I ++++ + + + +
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315
Query: 75 -------LVKVMENLSHMQL-------------LDTINLSHNFIEKI----ENLSCLPVL 110
+K ++ L+ L+ ++LS N + ++ L
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375
Query: 111 RTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPC 170
+ L LS N + T+ + L +D H+ ++ VF ++ L L +SH
Sbjct: 376 KYLDLSFNGVITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 171 VGKIKNYRRMFINLCVNLRHLD 192
+F L +L L
Sbjct: 434 RVAFNG---IFNGL-SSLEVLK 451
Score = 70.8 bits (174), Expect = 1e-14
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 11/163 (6%)
Query: 36 ENLEEYTGLKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVMENLS---HMQLLDTI 91
++ T LK L L NG+ + N ++ + H+ +K M S ++ L +
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 92 NLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
++SH N + L L L ++ N + + + L+ +D+S Q+E
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 150 VIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
F ++ L+VL +SHN + +L+ LD
Sbjct: 487 P-TAFNSLSSLQVLNMSHN----NFFSLDTFPYKCLNSLQVLD 524
Score = 70.4 bits (173), Expect = 2e-14
Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 9/154 (5%)
Query: 44 LKCLWLENNGISKIENLDAQTEMRSIYMHHN----LVKVMENLSHMQLLDTINLSHNFIE 99
LK L +N + + + + N ++ L ++LS N +
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 100 KI-ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP 158
+ N L L L H+ LK + + L +D+SH +F +
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLS 445
Query: 159 ELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
L VL ++ N NL LD
Sbjct: 446 SLEVLKMAGNSFQENFLPD---IFTELRNLTFLD 476
Score = 66.2 bits (162), Expect = 5e-13
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 14/138 (10%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN------LVKVMENLSHMQLLDTINL 93
L L + + N + + + + M N L + L ++ LD L
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD---L 477
Query: 94 SHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
S +E++ + L L+ L++SHN ++ D K L ++D S N I +
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMTSKKQ 536
Query: 152 EVFGAMPELRVLTLSHNP 169
E+ L L L+ N
Sbjct: 537 ELQHFPSSLAFLNLTQND 554
Score = 63.5 bits (155), Expect = 3e-12
Identities = 34/177 (19%), Positives = 72/177 (40%), Gaps = 19/177 (10%)
Query: 10 CKDNKLY-----LTPSLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIEN--L 60
C + Y L S L L F + + + L+ L L I IE+
Sbjct: 14 CMELNFYKIPDNLPFSTK-NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72
Query: 61 DAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLS 116
+ + + ++ + N ++ + S + L + + +EN + L L+ L+++
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132
Query: 117 HNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRV----LTLSHNP 169
HN +++ + E+ + L +D+S N+I+ + ++ + L LS NP
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNP 188
Score = 58.5 bits (142), Expect = 2e-10
Identities = 30/194 (15%), Positives = 67/194 (34%), Gaps = 40/194 (20%)
Query: 20 SLNDVLYLHFKGYTVIENLEEYT--GLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVK 77
++ ++ F+ +E ++ GL L +E ++ ++ +++
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY-----------LDDIID 276
Query: 78 VMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIED------------ 125
+ L++ + + +L IE++++ S + L L + +
Sbjct: 277 LFNCLTN---VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 333
Query: 126 ------IEHLKDCPLLSIVDVSHNQIEDEEVI-EVFGAMPELRVLTLSHNPCVGKIKNYR 178
D P L +D+S N + + + L+ L LS N +
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN----GVITMS 389
Query: 179 RMFINLCVNLRHLD 192
F+ L L HLD
Sbjct: 390 SNFLGL-EQLEHLD 402
Score = 47.7 bits (114), Expect = 7e-07
Identities = 25/166 (15%), Positives = 55/166 (33%), Gaps = 16/166 (9%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRS---IYMHHN-----LVKVMENLSHMQLLD-TIN 92
LK L + +N I + + + + + + + N + L M LL+ +++
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 93 LSHNFIEKIE-NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
LS N + I+ L L L +N ++ L + + + +E +
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243
Query: 152 E-----VFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
E + L + + + +F L N+
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL-TNVSSFS 288
Score = 35.4 bits (82), Expect = 0.010
Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 19/147 (12%)
Query: 24 VLYLH---FKGYTVIENLEEYTGLKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLVKV 78
VL + F+ + + E L L L + ++ ++ + ++ + M HN
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508
Query: 79 MEN--LSHMQLLDTINLSHNFIEKIEN---LSCLPVLRTLHLSHNRLKTIEDIEHLKDCP 133
++ + L ++ S N I + L L+L+ N C
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC--------TCE 560
Query: 134 LLSIVD-VSHNQIEDEEVIEVFGAMPE 159
S + + + EV + A P
Sbjct: 561 HQSFLQWIKDQRQLLVEVERMECATPS 587
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 69.6 bits (171), Expect = 1e-14
Identities = 34/181 (18%), Positives = 69/181 (38%), Gaps = 21/181 (11%)
Query: 24 VLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN--LVK 77
++LH + + L LWL +N +++I+ + + + N L
Sbjct: 36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95
Query: 78 VMEN-LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPL 134
V + L T++L ++++ L L+ L+L N L+ + D + +D
Sbjct: 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGN 154
Query: 135 LSIVDVSHNQIEDEEVIE--VFGAMPELRVLTLSHNPCVGKIKNY-RRMFINLCVNLRHL 191
L+ + + N+I + F + L L L N ++ + F +L L L
Sbjct: 155 LTHLFLHGNRI---SSVPERAFRGLHSLDRLLLHQN----RVAHVHPHAFRDL-GRLMTL 206
Query: 192 D 192
Sbjct: 207 Y 207
Score = 67.7 bits (166), Expect = 6e-14
Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 8/134 (5%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
L L L+ G+ ++ ++ +Y+ N ++ + + + L + L N
Sbjct: 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164
Query: 98 IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
I + L L L L NR+ + +D L + + N + E
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPT-EALA 222
Query: 156 AMPELRVLTLSHNP 169
+ L+ L L+ NP
Sbjct: 223 PLRALQYLRLNDNP 236
Score = 60.8 bits (148), Expect = 2e-11
Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 19/161 (11%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
+ ++L N IS + A + +++H N++ ++ + + LL+ ++LS N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 98 -IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI--E 152
+ ++ L L TLHL L+ + + L + + N + + + +
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAALQYLYLQDNAL---QALPDD 147
Query: 153 VFGAMPELRVLTLSHNPCVGKIKNYRR-MFINLCVNLRHLD 192
F + L L L N +I + F L +L L
Sbjct: 148 TFRDLGNLTHLFLHGN----RISSVPERAFRGL-HSLDRLL 183
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 69.8 bits (171), Expect = 3e-14
Identities = 29/153 (18%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 44 LKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101
+ + L+ N I+ I++ +++++ + N + + + + I LS N + +
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA---LTTIHFIPSIPDIFLSGNKLVTL 396
Query: 102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELR 161
++ +HLS NRL+ ++ + L P L I+ ++ N+ + P L
Sbjct: 397 PKINLT--ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE 454
Query: 162 VLTLSHNP--CVGKIKNYRRMFINLCVNLRHLD 192
L L N + + +F L +L+ L
Sbjct: 455 QLFLGENMLQLAWETELCWDVFEGL-SHLQVLY 486
Score = 62.9 bits (153), Expect = 7e-12
Identities = 33/212 (15%), Positives = 74/212 (34%), Gaps = 28/212 (13%)
Query: 2 TKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGIS------ 55
+ L + + + + N + + N L+ L + NG +
Sbjct: 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN 223
Query: 56 --------KIENLDAQTEMRSIYMHHNLVK-----VMENLSHMQLLDTINLSHNFIEKIE 102
+ +L + + +K L+ + ++LSH F+ +
Sbjct: 224 FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR-HLDLSHGFVFSLN 282
Query: 103 N--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPEL 160
+ L L+ L+L++N++ I D E L ++++S+N + + F +P++
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLGELYS-SNFYGLPKV 340
Query: 161 RVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+ L N I + L+ LD
Sbjct: 341 AYIDLQKN----HIAIIQDQTFKFLEKLQTLD 368
Score = 57.9 bits (140), Expect = 3e-10
Identities = 24/143 (16%), Positives = 45/143 (31%), Gaps = 12/143 (8%)
Query: 38 LEEYTGLKCLWLENNGIS-KIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTIN 92
L+ L L + I+ +R + + + + + + L +
Sbjct: 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103
Query: 93 LSHNFIEKI----ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE-- 146
L + L L L LS N+++++ L +D S NQI
Sbjct: 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163
Query: 147 DEEVIEVFGAMPELRVLTLSHNP 169
E +E L +L+ N
Sbjct: 164 CEHELEPL-QGKTLSFFSLAANS 185
Score = 55.2 bits (133), Expect = 3e-09
Identities = 39/177 (22%), Positives = 69/177 (38%), Gaps = 19/177 (10%)
Query: 5 SLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQT 64
S K+ K+ LT +L + + ++ L L+ L L N S +
Sbjct: 389 SGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448
Query: 65 EMRSI---YMHHNLVKVMEN-------LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRT 112
E S+ ++ N++++ + L + L+HN++ + S L LR
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508
Query: 113 LHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
L L+ NRL + + L I+D+S NQ+ L VL ++HN
Sbjct: 509 LSLNSNRLTVLSHNDLP---ANLEILDISRNQLLAPNP----DVFVSLSVLDITHNK 558
Score = 35.2 bits (81), Expect = 0.011
Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 9/88 (10%)
Query: 105 SCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLT 164
SC R L + + + +S N I F + +L++L
Sbjct: 1 SCSFDGRIAFYRFCNLTQV-----PQVLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLE 54
Query: 165 LSHNPCVGKIKNYRRMFINLCVNLRHLD 192
L I + F NL NLR LD
Sbjct: 55 LGSQYTPLTID--KEAFRNL-PNLRILD 79
Score = 28.6 bits (64), Expect = 1.7
Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 4/132 (3%)
Query: 24 VLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMEN 81
VLYL+ + T L+ L L +N ++ + + D + + + N + N
Sbjct: 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAP-N 542
Query: 82 LSHMQLLDTINLSHN-FIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDV 140
L ++++HN FI + E + + L +++ + +S+ +
Sbjct: 543 PDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSL 602
Query: 141 SHNQIEDEEVIE 152
S ++EEV++
Sbjct: 603 STEGCDEEEVLK 614
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 69.4 bits (170), Expect = 4e-14
Identities = 29/161 (18%), Positives = 67/161 (41%), Gaps = 14/161 (8%)
Query: 20 SLNDVLYLHFKGYTVIENLE--EYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNL 75
+LN + + V+ L E ++ L + + + +++ I + ++
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321
Query: 76 VKVMEN--LSHMQLLDTINLSHNFIEKIENLSC-----LPVLRTLHLSHNRLKTIEDIEH 128
V ++ H++ L+ ++LS N + + + P L+TL LS N L++++
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381
Query: 129 L-KDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
+ L+ +D+S N + + ++R L LS
Sbjct: 382 ILLTLKNLTSLDISRNTF--HPMPDSCQWPEKMRFLNLSST 420
Score = 67.8 bits (166), Expect = 1e-13
Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 10/157 (6%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
+K L L N I+ I + L A ++ + + + + +E + L+ ++LS N
Sbjct: 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85
Query: 98 IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
+ + + L L+ L+L N +T+ + L + + + + E F
Sbjct: 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145
Query: 156 AMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+ L L + ++NY+ + ++ HL
Sbjct: 146 GLTSLNELEIKAL----SLRNYQSQSLKSIRDIHHLT 178
Score = 52.4 bits (126), Expect = 2e-08
Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEK 100
++ L L + GI ++ + + + +N L L +Q L +S N ++
Sbjct: 410 EKMRFLNLSSTGIRVVKT-CIPQTLEVLDVSNNNLDSFSLFLPRLQELY---ISRNKLKT 465
Query: 101 IENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
+ + S PVL + +S N+LK++ D L + + N
Sbjct: 466 LPDASLFPVLLVMKISRNQLKSVPD-GIFDRLTSLQKIWLHTN 507
Score = 45.1 bits (107), Expect = 5e-06
Identities = 11/113 (9%), Positives = 39/113 (34%), Gaps = 9/113 (7%)
Query: 42 TGLKCLWLENNGISKIEN---LDAQTEMRSIYMHHN--LVKVMEN-LSHMQLLDTINLSH 95
+ LK L L N + T ++++ + + ++ + + L+ + +
Sbjct: 98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157
Query: 96 NFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE 146
+ ++ L + + L L + + +I + +++ +
Sbjct: 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI-FADILSSVRYLELRDTNLA 209
Score = 40.9 bits (96), Expect = 2e-04
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 42 TGLKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK 100
L+ L + NN + L ++ +Y+ N +K + + S +L + +S N ++
Sbjct: 431 QTLEVLDVSNNNLDSFSLFL---PRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKS 487
Query: 101 I--ENLSCLPVLRTLHLSHNRL 120
+ L L+ + L N
Sbjct: 488 VPDGIFDRLTSLQKIWLHTNPW 509
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 67.2 bits (164), Expect = 1e-13
Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 21/202 (10%)
Query: 19 PSLNDVLYLHFKGYTVIEN---LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHH 73
PS +L L + + T L L L +N ++ I + +R + +
Sbjct: 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97
Query: 74 NLVKVMEN--LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIED--IE 127
N + ++ S +Q L+ + L +N I ++ + L+ L+LS N++ I+
Sbjct: 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157
Query: 128 HLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPEL--RVLTLSHNP--CVGKIKNYRRMFIN 183
P L ++D+S N+++ + +P L L +NP C K+ +
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQY 216
Query: 184 LCVNLRHLDDYPVFDKDRKCAE 205
R L F +D C
Sbjct: 217 -----RQLSSVMDFQEDLYCMH 233
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 67.3 bits (165), Expect = 2e-13
Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 15/142 (10%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN----------LVKVMENLSHMQLLD 89
L L L NN I+ I + L+ ++ + + HN + L + L
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539
Query: 90 TINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147
+NL N ++I E L L+ + L N L T+ + L +++ N I
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNLITS 598
Query: 148 EEVIEVFGAMPELRVLTLSHNP 169
E A L L + NP
Sbjct: 599 VEKKVFGPAFRNLTELDMRFNP 620
Score = 66.9 bits (164), Expect = 3e-13
Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 15/162 (9%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVK-------VMENLSHMQLLDTIN 92
L+ L +E+N I I++ ++ + + ++ +L+H L +N
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH-ILN 387
Query: 93 LSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEV 150
L+ N I KIE+ S L L L L N + + + + + +S+N+
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT- 446
Query: 151 IEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
F +P L+ L L + + F L NL LD
Sbjct: 447 RNSFALVPSLQRLMLRRVALKN-VDSSPSPFQPL-RNLTILD 486
Score = 65.0 bits (159), Expect = 1e-12
Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
T + L L +N + ++ +++ S+ + N + +E + +L +NL HN
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 98 IEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
+ ++ + + L LHL N ++ I++ L +D+SHN + ++
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTKL-GTQV 142
Query: 156 AMPELRVLTLSHN 168
+ L+ L LS+N
Sbjct: 143 QLENLQELLLSNN 155
Score = 61.2 bits (149), Expect = 3e-11
Identities = 29/168 (17%), Positives = 64/168 (38%), Gaps = 24/168 (14%)
Query: 44 LKCLWLENNGIS-----KIENLDAQTEMRSIYMHHNLVKVMENLSHMQL----LDTINLS 94
L L+L N + K+ A T +R++ + ++ + N + + L L ++LS
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256
Query: 95 HNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI- 151
+N + + N + LP L L +N ++ + L + +++ + + +
Sbjct: 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLA 315
Query: 152 -------EVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
F + L L + N I + +NL++L
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDN----DIPGIKSNMFTGLINLKYLS 359
Score = 40.8 bits (96), Expect = 2e-04
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 11/111 (9%)
Query: 44 LKCLWLENNGISKI--ENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIE 99
L L LE+NG +I E E++ I + N + + ++ L ++NL N I
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597
Query: 100 KIENLSCLPV---LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147
+E P L L + N E + ++ ++ +H I +
Sbjct: 598 SVEKKVFGPAFRNLTELDMRFNPFDC--TCESIA--WFVNWINETHTNIPE 644
Score = 39.6 bits (93), Expect = 4e-04
Identities = 24/107 (22%), Positives = 34/107 (31%), Gaps = 25/107 (23%)
Query: 106 CLPVLRTLHLSHNRLKTI-----EDIEHL---------------KDCPLLSIVDVSHNQI 145
C SH +L + +I L L+ +DV N I
Sbjct: 2 CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 146 EDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
E E+ +P L+VL L HN ++ C NL L
Sbjct: 62 SKLEP-ELCQKLPMLKVLNLQHN----ELSQLSDKTFAFCTNLTELH 103
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 67.0 bits (164), Expect = 2e-13
Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 17/176 (9%)
Query: 10 CKDNKLY-----LTPSLNDVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--L 60
C + Y L S L L F + + + L+ L L I IE+
Sbjct: 14 CMELNFYKIPDNLPFSTK-NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72
Query: 61 DAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLS 116
+ + + ++ + N ++ + S + L + + +EN + L L+ L+++
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132
Query: 117 HNRLKTIEDIEHLKDCPLLSIVDVSHNQIE--DEEVIEVFGAMPELRV-LTLSHNP 169
HN +++ + E+ + L +D+S N+I+ + V MP L + L LS NP
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188
Score = 66.7 bits (163), Expect = 3e-13
Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 13/156 (8%)
Query: 44 LKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH----MQLLDTINLSHNFIE 99
LK L +N + + + + N + S L ++LS N +
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 100 KI-ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP 158
+ N L L L H+ LK + + L +D+SH +F +
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLS 445
Query: 159 ELRVLTLSHNPCVGKIKNY--RRMFINLCVNLRHLD 192
L VL ++ N + +F L NL LD
Sbjct: 446 SLEVLKMAGN----SFQENFLPDIFTEL-RNLTFLD 476
Score = 65.5 bits (160), Expect = 8e-13
Identities = 32/157 (20%), Positives = 66/157 (42%), Gaps = 11/157 (7%)
Query: 42 TGLKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVMENLS---HMQLLDTINLSHNF 97
T LK L L NG+ + N ++ + H+ +K M S ++ L +++SH
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 98 IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
N + L L L ++ N + + + L+ +D+S Q+E F
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFN 491
Query: 156 AMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
++ L+VL ++ N ++K+ + +L+ +
Sbjct: 492 SLSSLQVLNMASN----QLKSVPDGIFDRLTSLQKIW 524
Score = 62.0 bits (151), Expect = 1e-11
Identities = 26/155 (16%), Positives = 62/155 (40%), Gaps = 11/155 (7%)
Query: 24 VLYLHFKGYTVI-ENLEEYTGLKCLWLENNGISKIENLDA---QTEMRSIYMHHNLVKVM 79
L L F G + N L+ L +++ + ++ + + + H +V
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 80 EN--LSHMQLLDTINLSHNFIEKI---ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPL 134
N + + L+ + ++ N ++ + + L L L LS +L+ +
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSS 495
Query: 135 LSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
L +++++ NQ++ +F + L+ + L NP
Sbjct: 496 LQVLNMASNQLKSVPD-GIFDRLTSLQKIWLHTNP 529
Score = 49.3 bits (118), Expect = 3e-07
Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 25/163 (15%)
Query: 49 LENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLP 108
+ + + + NL E R Y+ + L +++ + + + + +L IE++++ S
Sbjct: 246 FDKSALEGLCNLT-IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304
Query: 109 VLRTLHLSHNRLKT------------------IEDIEHLKDCPLLSIVDVSHNQIEDEEV 150
+ L L + + + D P L +D+S N + +
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364
Query: 151 I-EVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+ L+ L LS N + F+ L L HLD
Sbjct: 365 CSQSDFGTTSLKYLDLSFN----GVITMSSNFLGL-EQLEHLD 402
Score = 38.5 bits (90), Expect = 8e-04
Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 21/146 (14%)
Query: 42 TGLKCLWLENNGISKIENLD------AQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINL 93
T L+ L L +N I I D S+ + N + ++ ++L + L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH-KLTL 207
Query: 94 SHNFI------EKIENLSCLPVLR---TLHLSHNRLKTIEDIEHLKDCPLLSIV--DVSH 142
+NF I+ L+ L V R + L+ D L+ L+I +++
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF-DKSALEGLCNLTIEEFRLAY 266
Query: 143 NQIEDEEVIEVFGAMPELRVLTLSHN 168
+++I++F + + +L
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSV 292
Score = 38.2 bits (89), Expect = 0.001
Identities = 12/98 (12%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 42 TGLKCLWLENNGISKI---ENLDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHN 96
+ L+ L + N + + + + + ++ + + + L +N++ N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 97 FIEKIEN--LSCLPVLRTLHLSHNRLK-TIEDIEHLKD 131
++ + + L L+ + L N + I++L
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 542
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 65.8 bits (160), Expect = 3e-13
Identities = 33/206 (16%), Positives = 67/206 (32%), Gaps = 42/206 (20%)
Query: 7 RKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTG--LKCLWLENNGISKIENL--DA 62
KI ++ +N H + E + + + ++ L D
Sbjct: 82 YKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP 141
Query: 63 QTEMRSIYMHHNLVKVMENL-----SHMQLLDTINLSHNFIEKIENLSCL----PVLRTL 113
++I + N M ++ L ++NLS+N + +++++S + P L+ L
Sbjct: 142 DLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 201
Query: 114 HLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGK 173
+LS N LK+ +++ +K L L L N
Sbjct: 202 NLSGNELKSERELDKIKGLK--------------------------LEELWLDGNSLCDT 235
Query: 174 IK---NYRRMFINLCVNLRHLDDYPV 196
+ Y L LD + +
Sbjct: 236 FRDQSTYISAIRERFPKLLRLDGHEL 261
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 65.8 bits (161), Expect = 7e-13
Identities = 30/196 (15%), Positives = 70/196 (35%), Gaps = 29/196 (14%)
Query: 12 DNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGI------SKIENLDAQTE 65
N+ L D + + ++ +++ N + + ++ + +
Sbjct: 282 CNRGISGEQLKDDW-------QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM---KK 331
Query: 66 MRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKT 122
+ + +N L + L ++NL++N I +I + L +HN+LK
Sbjct: 332 LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391
Query: 123 IEDIEHLKDCPLLSIVDVSHNQIED------EEVIEVFGAMPELRVLTLSHNPCVGKIKN 176
I +I K ++S +D S+N+I + + + + LS+N K
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451
Query: 177 YRRMFINLCVNLRHLD 192
+ L ++
Sbjct: 452 ----LFSTGSPLSSIN 463
Score = 58.1 bits (141), Expect = 2e-10
Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 26/149 (17%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQL-------------L 88
+ + + N I ++ + + + N+ + NLS+ Q+ L
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI--NLSNNQISKFPKELFSTGSPL 459
Query: 89 DTINLSHNFIEKI---------ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVD 139
+INL N + +I EN +L ++ L N+L + D P L +D
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519
Query: 140 VSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
+S+N + L+ + +
Sbjct: 520 LSYNSF--SKFPTQPLNSSTLKGFGIRNQ 546
Score = 54.7 bits (132), Expect = 4e-09
Identities = 24/160 (15%), Positives = 62/160 (38%), Gaps = 15/160 (9%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSH-NFIEK 100
T L+ ++ N+ EN+ E + +++ L + + + + K
Sbjct: 206 TKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264
Query: 101 I-ENLSCLPVLRTLHLSHNRLKTIEDIE-------HLKDCPLLSIVDVSHNQIEDEEVIE 152
+ L LP ++ ++++ NR + E ++ + I+ + +N ++ V
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324
Query: 153 VFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
M +L +L +N +++ F + + L L+
Sbjct: 325 SLQKMKKLGMLECLYN----QLEGKLPAFGSE-IKLASLN 359
Score = 52.7 bits (127), Expect = 2e-08
Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 17/145 (11%)
Query: 36 ENLEEYTGLKCLWLENNGISKIENLDAQTEMRS---IYMHHNLVKV-------MENLSHM 85
EN + L + L N ++K+ + T + I + +N L
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGF 541
Query: 86 QLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
+ + + N + E ++ P L L + N ++ + + K P +S++D+ N
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE----KITPNISVLDIKDN 597
Query: 144 QIEDEEVIEVFGAMPELRVLTLSHN 168
+ + E + L ++
Sbjct: 598 PNISID-LSYVCPYIEAGMYMLFYD 621
Score = 38.9 bits (91), Expect = 6e-04
Identities = 22/189 (11%), Positives = 55/189 (29%), Gaps = 41/189 (21%)
Query: 35 IENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQL-----LD 89
I L T L+ L L ++G E L + + K+ + + D
Sbjct: 101 IGQL---TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED 157
Query: 90 TINLSHNFIEKIENLSCLP-------VLRTLHLSHNRLKTI-EDIEHLKDCPLLSIVDVS 141
+L + I + + N + + + + L L +
Sbjct: 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTK---LRQFYMG 214
Query: 142 HNQIEDEEVIEV------------------FGAMPELRVLTLSHNPCVGKIKNYRRMFIN 183
++ E + E + + +L + + + P + K+ F+
Sbjct: 215 NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT----FLK 270
Query: 184 LCVNLRHLD 192
++ ++
Sbjct: 271 ALPEMQLIN 279
Score = 36.9 bits (86), Expect = 0.003
Identities = 12/113 (10%), Positives = 28/113 (24%), Gaps = 10/113 (8%)
Query: 88 LDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEH---LKDCPLLSIVDVSH 142
+ ++L + + L L L L + K E + +
Sbjct: 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142
Query: 143 NQIEDEEVIEVFGA-MPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDY 194
+ V +L ++ +P IK + + +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK----SSRITLKDTQIGQL 191
Score = 29.2 bits (66), Expect = 1.0
Identities = 11/114 (9%), Positives = 26/114 (22%), Gaps = 32/114 (28%)
Query: 42 TGLKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVMENLS--------HMQLLDTIN 92
L + L N SK + ++ + + L +
Sbjct: 513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572
Query: 93 LSHNFIEKIE---------------NLSCLPV--------LRTLHLSHNRLKTI 123
+ N I K+ + + L +++ + I
Sbjct: 573 IGSNDIRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDI 626
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 64.3 bits (157), Expect = 2e-12
Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 10/144 (6%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
L H T + +E+ TGL L +N I+ + +L T + + N + + +++
Sbjct: 47 LDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNL-DVTP 104
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
+ L +N N + K+ ++S P+L L+ + N L I+ + L+ +D N+
Sbjct: 105 LTKLTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNK 159
Query: 145 IEDEEVIEVFGAMPELRVLTLSHN 168
+L L S N
Sbjct: 160 KIT---KLDVTPQTQLTTLDCSFN 180
Score = 62.0 bits (151), Expect = 1e-11
Identities = 27/156 (17%), Positives = 61/156 (39%), Gaps = 16/156 (10%)
Query: 37 NLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHN 96
+ E+ L L N+ I+ + ++ T + + N + + +LS L + N
Sbjct: 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSN 95
Query: 97 FIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
+ + +++ L L L+ N+L ++ + PLL+ ++ + N + + +
Sbjct: 96 KLTNL-DVTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID----VSH 146
Query: 157 MPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+L L N + K+ + L LD
Sbjct: 147 NTQLTELDCHLNKKITKLD------VTPQTQLTTLD 176
Score = 60.5 bits (147), Expect = 4e-11
Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 9/127 (7%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101
+ L L + +I +L T++ +++H L ++ I ++
Sbjct: 254 SKLTTLHCIQTDLLEI-DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL 312
Query: 102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELR 161
+LS P L L+L++ L ++ + L + + I+D G +P L
Sbjct: 313 -DLSQNPKLVYLYLNNTELTELD----VSHNTKLKSLSCVNAHIQD---FSSVGKIPALN 364
Query: 162 VLTLSHN 168
+
Sbjct: 365 NNFEAEG 371
Score = 60.1 bits (146), Expect = 5e-11
Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 10/132 (7%)
Query: 37 NLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHN 96
++ T L L + N ++K+ ++ + + N + + ++SH L ++ N
Sbjct: 101 DVTPLTKLTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLN 158
Query: 97 FIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
+++ L TL S N++ ++ + LL+ ++ N I +
Sbjct: 159 KKITKLDVTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITKLD----LNQ 210
Query: 157 MPELRVLTLSHN 168
+L L S N
Sbjct: 211 NIQLTFLDCSSN 222
Score = 57.0 bits (138), Expect = 5e-10
Identities = 18/128 (14%), Positives = 44/128 (34%), Gaps = 11/128 (8%)
Query: 44 LKCLWLENNGISKIENLDAQ--TEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101
+ + + + + S+ H++ + M + + L + + N I +
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL 79
Query: 102 ENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELR 161
+LS L L N+L ++ + L+ ++ N++ + P L
Sbjct: 80 -DLSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNKLTKLD----VSQNPLLT 130
Query: 162 VLTLSHNP 169
L + N
Sbjct: 131 YLNCARNT 138
Score = 55.1 bits (133), Expect = 2e-09
Identities = 20/145 (13%), Positives = 50/145 (34%), Gaps = 11/145 (7%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
L H ++ T L L N I+++ ++ + + N + + +L+
Sbjct: 153 LDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-DVSQNKLLNRLNCDTNNITKL-DLNQ 210
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
L ++ S N + +I +++ L L S N L ++ + L+ +
Sbjct: 211 NIQLTFLDCSSNKLTEI-DVTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQTD 265
Query: 145 IEDEEVIEVFGAMPELRVLTLSHNP 169
+ + ++ +L
Sbjct: 266 LLEIDL----THNTQLIYFQAEGCR 286
Score = 48.9 bits (117), Expect = 3e-07
Identities = 20/133 (15%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 20 SLNDVLYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVK 77
++Y +G I+ ++ T L L + GI+++ +L ++ +Y+++ +
Sbjct: 273 HNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL-DLSQNPKLVYLYLNNTELT 331
Query: 78 VMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIE----HLKDCP 133
+ ++SH L +++ + I+ ++ +P L + + T+ L
Sbjct: 332 EL-DVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAV 390
Query: 134 LLSIVDVSHNQIE 146
++D N +
Sbjct: 391 SPDLLDQFGNPMN 403
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 61.7 bits (150), Expect = 1e-11
Identities = 33/158 (20%), Positives = 68/158 (43%), Gaps = 12/158 (7%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNF 97
+K L L NN I+ I N L ++++ + N + +E S + L+ ++LS+N+
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 98 IEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFG 155
+ + + L L L+L N KT+ + L I+ V + + + F
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171
Query: 156 AMPELRVLTLSHNPCVGKIKNY-RRMFINLCVNLRHLD 192
+ L L + + +++Y + ++ N+ HL
Sbjct: 172 GLTFLEELEIDAS----DLQSYEPKSLKSI-QNVSHLI 204
Score = 57.8 bits (140), Expect = 2e-10
Identities = 23/180 (12%), Positives = 62/180 (34%), Gaps = 19/180 (10%)
Query: 6 LRKICKDNKLYLTPSLNDVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LD 61
+ + + + L + + +T I+ T L+ L ++ + + E L
Sbjct: 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195
Query: 62 AQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIE----------NLSCLPV 109
+ + + +H ++ + ++ + L ++ +L
Sbjct: 196 SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
R + ++ L + + L L ++ S NQ++ +F + L+ + L NP
Sbjct: 256 FRNVKITDESLFQVMKL--LNQISGLLELEFSRNQLKSVPD-GIFDRLTSLQKIWLHTNP 312
Score = 55.1 bits (133), Expect = 2e-09
Identities = 27/186 (14%), Positives = 59/186 (31%), Gaps = 25/186 (13%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCL----WLENNGISKIEN--LDAQTEMRSIYMHHN-LVK 77
L L Y + ++ L L + +KI+ T + + + + L
Sbjct: 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188
Query: 78 VMEN-LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIE-------DIE 127
L +Q + + L + + + L L L T +
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248
Query: 128 HLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN-YRRMFINLCV 186
L V ++ + +V+++ + L L S N ++K+ +F L
Sbjct: 249 SLIKKFTFRNVKITDESLF--QVMKLLNQISGLLELEFSRN----QLKSVPDGIFDRL-T 301
Query: 187 NLRHLD 192
+L+ +
Sbjct: 302 SLQKIW 307
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 59.9 bits (146), Expect = 7e-11
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Query: 81 NLSHMQLLDTINLSHN-FIEKIENLSCLPVLRTLHLSHNRLK-TIEDIEHLKDCPLLSIV 138
+L + L+++ LS++ + C L +L LS N L + + L C L +
Sbjct: 72 SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 131
Query: 139 DVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+VS N ++ + + L VL LS N G + L+HL
Sbjct: 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC-GELKHLA 184
Score = 54.5 bits (132), Expect = 4e-09
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 12/118 (10%)
Query: 81 NLSHMQLLDTINLSHNF----IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLS 136
L +++LS N + + +L L+ L++S N L + L
Sbjct: 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154
Query: 137 IVDVSHNQIEDE--EVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
++D+S N I + EL+ L +S N G + ++ CVNL LD
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD------VSRCVNLEFLD 206
Score = 53.0 bits (128), Expect = 1e-08
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 22/162 (13%)
Query: 42 TGLKCLWLENNGIS-----KIENLDAQTEMRSIYMHHNLV--KVMENLSHMQLLDTINLS 94
L+ L+L+NNG + + N +E+ S+++ N + + +L + L + L
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNC---SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 95 HNFIE-KI-ENLSCLPVLRTLHLSHNRLK-TIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
N +E +I + L + L TL L N L I L +C L+ + +S+N++ E I
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEI--PSGLSNCTNLNWISLSNNRLTGE--I 506
Query: 152 -EVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+ G + L +L LS+N G I + C +L LD
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAE----LGDCRSLIWLD 544
Score = 51.1 bits (123), Expect = 6e-08
Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 29/166 (17%)
Query: 42 TGLKCLWLENNGIS-----KIENLDAQTEMRSIYMHHNLVKVMENL------SHMQLLDT 90
+ L+ L + N +S I TE++ + + N ++ L
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTC---TELKLLNISSN------QFVGPIPPLPLKSLQY 273
Query: 91 INLSHNFIE-KI-ENLSC-LPVLRTLHLSHNRLK-TIEDIEHLKDCPLLSIVDVSHNQIE 146
++L+ N +I + LS L L LS N + C LL + +S N
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP--PFFGSCSLLESLALSSNNFS 331
Query: 147 DEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
E ++ M L+VL LS N G++ NL +L LD
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPES---LTNLSASLLTLD 374
Score = 50.3 bits (121), Expect = 1e-07
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 64 TEMRSIYMHHNLVK--VMENLSHMQLLDTINLSHNFIE-KI-ENLSCLPVLRTLHLSHNR 119
+ + + + + +++S+N + I + + +P L L+L HN
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667
Query: 120 LK-TI-EDIEHLKDCPLLSIVDVSHNQIEDEEVI-EVFGAMPELRVLTLSHNPCVGKI 174
+ +I +++ L+ L+I+D+S N+++ I + A+ L + LS+N G I
Sbjct: 668 ISGSIPDEVGDLRG---LNILDLSSNKLDGR--IPQAMSALTMLTEIDLSNNNLSGPI 720
Score = 46.8 bits (112), Expect = 2e-06
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 5/112 (4%)
Query: 65 EMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI-ENLSCLPVLRTLHLSHNRLKTI 123
++ + ++ ++N + F E L+ L +++
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG- 622
Query: 124 EDIEHLKDCPLLSIVDVSHNQIEDEEVI-EVFGAMPELRVLTLSHNPCVGKI 174
+ + +D+S+N + I + G+MP L +L L HN G I
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGY--IPKEIGSMPYLFILNLGHNDISGSI 672
Score = 43.0 bits (102), Expect = 3e-05
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 20/118 (16%)
Query: 82 LSHMQLLDTINLSHNFIE-KIENLSCLPVLRTLHLSHNRLK-TIEDIEHLKDCPLLSIVD 139
+S L+ +++S N I L L+ L +S N+L + C L +++
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS--RAISTCTELKLLN 253
Query: 140 VSHNQIEDEEVIEVFGAMPE-----LRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+S NQ G +P L+ L+L+ N G+I ++ C L LD
Sbjct: 254 ISSNQFV--------GPIPPLPLKSLQYLSLAENKFTGEIPDF---LSGACDTLTGLD 300
Score = 38.0 bits (89), Expect = 0.001
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 36 ENLEEYTGLKCLWLENNGIS-KI-ENLDAQTEMRSIYMHHNLV--KVMENLSHMQLLDTI 91
+L + L+ L L N + +I + L + ++ + N + ++ LS+ L+ I
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 92 NLSHNFIE-KI-ENLSCLPVLRTLHLSHNRLKTIEDI-EHLKDCPLLSIVDVSHNQI 145
+LS+N + +I + + L L L LS+N +I L DC L +D++ N
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSF--SGNIPAELGDCRSLIWLDLNTNLF 550
Score = 38.0 bits (89), Expect = 0.002
Identities = 29/189 (15%), Positives = 60/189 (31%), Gaps = 42/189 (22%)
Query: 36 ENLEEYTGLKCLWLENNGIS-----KIENLDAQTEMRSIYMHHNLV-----KVMENLSHM 85
+ L L+ L L+ N ++ + N T + I + +N + K + L ++
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNC---TNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 86 QLLDTINLSHN-FIEKI-ENLSCLPVLRTLHLSHNRL-------------------KTIE 124
+L LS+N F I L L L L+ N +
Sbjct: 517 AILK---LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 125 DIEHLKDCPLLSIVDVSHNQIEDEEVI-EVFGAMPELRVLTLSHNPCVGKIKNYRRMFIN 183
++K+ + + N +E + + E + ++ G +
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT----FD 629
Query: 184 LCVNLRHLD 192
++ LD
Sbjct: 630 NNGSMMFLD 638
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 56.9 bits (138), Expect = 6e-10
Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 39 EEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNF 97
+ L+ + NN + ++ L + +IY +N L K+ + ++ + +N
Sbjct: 170 DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIV---AGNNI 226
Query: 98 IEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM 157
+E++ L LP L T++ +N LKT+ D+ P L ++V N + ++
Sbjct: 227 LEELPELQNLPFLTTIYADNNLLKTLPDL-----PPSLEALNVRDNYLT-----DLPELP 276
Query: 158 PELRVLTLSHN 168
L L +S N
Sbjct: 277 QSLTFLDVSEN 287
Score = 56.5 bits (137), Expect = 8e-10
Identities = 26/156 (16%), Positives = 61/156 (39%), Gaps = 24/156 (15%)
Query: 39 EEYTGLKCLWLENNGISKI-ENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
E L+ L N ++++ E + + + + LL+ + +S+N
Sbjct: 88 ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS-----DLPPLLEYLGVSNNQ 142
Query: 98 IEKIENLSCLPVLRTLHLSHNRLKTI-EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
+EK+ L L+ + + +N LK + + L+ + +NQ+E+ +
Sbjct: 143 LEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE------FIAAGNNQLEE---LPELQN 193
Query: 157 MPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+P L + +N +K +L ++L +
Sbjct: 194 LPFLTAIYADNN----SLKK----LPDLPLSLESIV 221
Score = 48.5 bits (116), Expect = 4e-07
Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 18/137 (13%)
Query: 33 TVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTI 91
+ L+ L ++ +NN + + +L + ++ + N L + E + LD
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPELPQSLTFLD-- 283
Query: 92 NLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
+S N + L P L L+ S N ++++ D P L ++VS+N++
Sbjct: 284 -VSENIFSGLSEL--PPNLYYLNASSNEIRSLCD-----LPPSLEELNVSNNKLI----- 330
Query: 152 EVFGAMPELRVLTLSHN 168
E+ P L L S N
Sbjct: 331 ELPALPPRLERLIASFN 347
Score = 40.4 bits (95), Expect = 2e-04
Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 27/143 (18%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEK 100
L L +N I + +L + + + +N L+++ ++ L S N + +
Sbjct: 297 PNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIELPALPPRLERLI---ASFNHLAE 351
Query: 101 IENLSCLPVLRTLHLSHNRLKTI-EDIEHLKD-------------CPLLSIVDVSHNQIE 146
+ L L+ LH+ +N L+ + E ++D L + V N +
Sbjct: 352 VPEL--PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409
Query: 147 DEEVIEVFGAMPELRVLTLSHNP 169
E + L ++
Sbjct: 410 -----EFPDIPESVEDLRMNSER 427
Score = 38.4 bits (90), Expect = 0.001
Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
Query: 39 EEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFI 98
E LK L +E N + + ++ + + M+ +L +V E +++ L + N +
Sbjct: 354 ELPQNLKQLHVEYNPLREFPDI--PESVEDLRMNSHLAEVPELPQNLKQLH---VETNPL 408
Query: 99 EKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQI 145
+ ++ + L ++ R+ + H L H+
Sbjct: 409 REFPDI--PESVEDLRMNSERVVDPYEFAHET-TDKLEDDVFEHHHH 452
Score = 32.3 bits (74), Expect = 0.11
Identities = 11/102 (10%), Positives = 33/102 (32%), Gaps = 19/102 (18%)
Query: 80 ENLSHMQLLDTINLSHNFIEKI-ENLSCLPVLRTLHLSHNRLKTI----------EDIEH 128
N+S+ L + + + + ++ + + + + + +
Sbjct: 6 RNVSNTFLQEPL-RHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64
Query: 129 LKDCPLLSI--VDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
L+DC +++++ + + P L L S N
Sbjct: 65 LRDCLDRQAHELELNNLGLS-----SLPELPPHLESLVASCN 101
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 56.3 bits (136), Expect = 6e-10
Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 17/160 (10%)
Query: 19 PSLNDVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-- 74
P +L+L L YT L L L+ ++K++ + ++ + HN
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89
Query: 75 --LVKVMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIED--IEH 128
L + + L + +LD +S N + + L L L+ L+L N LKT+ +
Sbjct: 90 QSLPLLGQTLPALTVLD---VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 129 LKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
P L + +++N + + + + L L L N
Sbjct: 147 T---PKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQEN 182
Score = 42.0 bits (99), Expect = 4e-05
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVK-----VMENLSHMQLLDTINLS 94
L L + N ++ + L E++ +Y+ N +K ++ ++ L L+
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS---LA 156
Query: 95 HNFIEKIEN--LSCLPVLRTLHLSHNRLKTI 123
+N + ++ L+ L L TL L N L TI
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Score = 31.6 bits (72), Expect = 0.13
Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 28/108 (25%)
Query: 105 SCLPVLRTLHLSHNRLKTI-----EDIEHL---------------KDCPLLSIVDVSHNQ 144
S + ++ L + +D L L+ +++ +
Sbjct: 7 SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Query: 145 IEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+ ++V G +P L L LSHN ++++ + L L LD
Sbjct: 67 L---TKLQVDGTLPVLGTLDLSHN----QLQSLPLLGQTL-PALTVLD 106
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 55.6 bits (134), Expect = 2e-09
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 26/129 (20%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101
L + N IS++ + +LS +++L +SHN I+ +
Sbjct: 21 QKTTILNISQNYISELWT-----------------SDILSLSKLRIL---IISHNRIQYL 60
Query: 102 EN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE 159
+ L L LSHN+L I + L +D+S N + + + FG M +
Sbjct: 61 DISVFKFNQELEYLDLSHNKLVKI-SCHPTVN---LKHLDLSFNAFDALPICKEFGNMSQ 116
Query: 160 LRVLTLSHN 168
L+ L LS
Sbjct: 117 LKFLGLSTT 125
Score = 50.2 bits (120), Expect = 1e-07
Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 10/135 (7%)
Query: 42 TGLKCLWLENNGISKIENL----DAQTEMRSIYMHHNLVKVMEN---LSHMQLLDTINLS 94
T L+ L L+ N + ++ + ++ + + N V E S + L ++N+S
Sbjct: 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407
Query: 95 HNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVF 154
N + P ++ L L N++K+I + + L ++V+ NQ++ +F
Sbjct: 408 SNILTDTIFRCLPPRIKVLDLHSNKIKSIP--KQVVKLEALQELNVASNQLKSVPD-GIF 464
Query: 155 GAMPELRVLTLSHNP 169
+ L+ + L NP
Sbjct: 465 DRLTSLQKIWLHTNP 479
Score = 42.5 bits (100), Expect = 4e-05
Identities = 27/184 (14%), Positives = 62/184 (33%), Gaps = 17/184 (9%)
Query: 19 PSLNDVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN 74
+L + + + + + L+ L + +N I ++ E+ + + HN
Sbjct: 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79
Query: 75 LVKVM--ENLSHMQLLDTINLSHNFIEKI---ENLSCLPVLRTLHLSHNRLKTIEDIEHL 129
+ + +++ LD LS N + + + + L+ L LS L+ + +
Sbjct: 80 KLVKISCHPTVNLKHLD---LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-SVLPI 135
Query: 130 KDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN-PCVGKIKNYRRMFINLCVNL 188
L+I V E E + + +L P + + + NL
Sbjct: 136 A---HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192
Query: 189 RHLD 192
+
Sbjct: 193 ELSN 196
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 52.0 bits (125), Expect = 1e-08
Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 41/159 (25%)
Query: 23 DVLYLHFKGYTVIE---NLEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVK 77
L L+ +TV+E ++ L+ + NN I+ IE + + + I + N ++
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 78 -----VMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLK 130
+ + L ++ L L N I + N L +R L L N++ T+
Sbjct: 95 NVQHKMFKGLESLKTLM---LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP----- 146
Query: 131 DCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
F + L L L NP
Sbjct: 147 ---------------------GAFDTLHSLSTLNLLANP 164
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 52.6 bits (126), Expect = 1e-08
Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 28/172 (16%)
Query: 16 YLTPSLNDVLYLHFKGYTVI--ENLEEYTGLKCLWLENNGISKIENLDAQ------TEMR 67
+L P L VL + E + + L L L +N L + ++
Sbjct: 146 WLKPGLK-VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204
Query: 68 SIYMHHNLVK-----VMENLSHMQLLDTINLSHNFIEKI---ENLSCLPVLRTLHLSHNR 119
+ + + ++ + L ++LSHN + + L +L+LS
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264
Query: 120 LKTIEDIEHLKDC--PLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
L + + LS++D+S+N+++ +P++ L+L NP
Sbjct: 265 L------KQVPKGLPAKLSVLDLSYNRLDR---NPSPDELPQVGNLSLKGNP 307
Score = 49.9 bits (119), Expect = 1e-07
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 14/117 (11%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEM-----RSIYMHHNLVKVM---ENLSHMQLLDTINL 93
L+ L L N G+ + + + + + HN ++ + L+++NL
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260
Query: 94 SHNFIEKIENLSCLPV-LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
S ++++ LP L L LS+NRL + L P + + + N D E
Sbjct: 261 SFTGLKQVP--KGLPAKLSVLDLSYNRLDRNPSPDEL---PQVGNLSLKGNPFLDSE 312
Score = 38.3 bits (89), Expect = 9e-04
Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 5/116 (4%)
Query: 81 NLSHMQLLDTINLSHNFIEKIENLSC-LPVLRTLHLSHNRLKTIED-IEHLKDC--PLLS 136
+S +Q L NL L P L L+L + T + + L+ P L
Sbjct: 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152
Query: 137 IVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
++ ++ + E P L L LS NP +G+ + L+ L
Sbjct: 153 VLSIAQAHSLNFS-CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 50.9 bits (123), Expect = 2e-08
Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 14/122 (11%)
Query: 64 TEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEKI-ENLSCLPVLRTLHLSHNRLK 121
E + + L ++ + + + + + ++ + LP L + L
Sbjct: 4 PEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT 63
Query: 122 TI-EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN------PCVGKI 174
+ + L + S + + ++ + G +PE L + VG++
Sbjct: 64 RLKAAVGELPE---KSKLQEIYQEL--TRLKAAVGELPEKSKLQEIYQELTELKAAVGEL 118
Query: 175 KN 176
Sbjct: 119 PE 120
Score = 49.4 bits (119), Expect = 6e-08
Identities = 11/151 (7%), Positives = 39/151 (25%), Gaps = 37/151 (24%)
Query: 35 IENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLS 94
+ L L L ++ + + +
Sbjct: 46 VGEL---PEKSKLQEIYQ---------------------ELTRLKAAVGELPEKSKLQEI 81
Query: 95 HNFIEKI-ENLSCLPVLRTLHLSHNRLKTI-EDIEHLKDCPLLSIVDVSHNQIEDEEVIE 152
+ + ++ + LP L + L + + L + S + + ++ ++
Sbjct: 82 YQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPE---KSKLQEIYQEL--TQLKA 136
Query: 153 VFGAMPELRVLTLSHN------PCVGKIKNY 177
G +P+ + ++ ++
Sbjct: 137 AVGELPDQSKQQQIYQELTDLKTAFERLGHH 167
Score = 39.8 bits (94), Expect = 1e-04
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 107 LPVLRTLHLSHNRLKTI-EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTL 165
LP L + L + + L + S + + ++ + G +PE L
Sbjct: 3 LPEKSKLQEIYQELTRLKAAVGELPE---KSKLQEIYQEL--TRLKAAVGELPEKSKLQE 57
Query: 166 SHN 168
+
Sbjct: 58 IYQ 60
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 52.4 bits (126), Expect = 2e-08
Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 40/164 (24%)
Query: 17 LTPSLNDVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMH 72
L S L + +T L+ L L N I+KI++ T + + +
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331
Query: 73 HNLVK-----VMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIED 125
N + + ENL +++LD LS+N I + + LP L+ L L N+LK++ D
Sbjct: 332 QNFLGSIDSRMFENLDKLEVLD---LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388
Query: 126 IEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
+F + L+ + L NP
Sbjct: 389 --------------------------GIFDRLTSLQKIWLHTNP 406
Score = 42.8 bits (101), Expect = 3e-05
Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 17/177 (9%)
Query: 10 CKDNKLYLTPSLN---DVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIENLDA-- 62
C + L+ P L + + L + L+ L +E + +
Sbjct: 17 CINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR 76
Query: 63 -QTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIE----NLSCLPVLRTLHL 115
+ + + + +N +E + + L+ + L+ ++ L L L L
Sbjct: 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136
Query: 116 SHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP--ELRVLTLSHNPC 170
N +K I+ + ++D++ N+++ E +L LS
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE-EDLLNFQGKHFTLLRLSSITL 192
Score = 41.3 bits (97), Expect = 1e-04
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 7/84 (8%)
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
+ + LS N + + + L + V F + L +L L +N
Sbjct: 32 VNYVDLSLNSIAELNE-TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN- 89
Query: 170 CVGKIKNY-RRMFINLCVNLRHLD 192
+ F L NL L
Sbjct: 90 ---QFLQLETGAFNGL-ANLEVLT 109
Score = 35.9 bits (83), Expect = 0.007
Identities = 29/157 (18%), Positives = 44/157 (28%), Gaps = 30/157 (19%)
Query: 42 TGLKCLWLENNGISKIEN---LDAQTEMRSIYMHHNLVKVME-----NLSHMQL----LD 89
T L+ L L +N I KI+ + + N VK + N L
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188
Query: 90 TINLSHNFIEKIENLSC-----LPVLRTLHLSHNRLKTI-----------EDIEHLK-DC 132
+I L + C + TL LS N K I+ L
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248
Query: 133 PLLSIVDVSHNQIEDEEVIEVFG-AMPELRVLTLSHN 168
H +D + G ++ LS +
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 51.2 bits (123), Expect = 3e-08
Identities = 23/136 (16%), Positives = 53/136 (38%), Gaps = 9/136 (6%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN--LVKVMENL-SHMQLLDTINLSHN 96
+ L L + I + + IY+ + L ++ + ++ + I + +
Sbjct: 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 97 -FIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEV 153
+ I+ L LP+L+ L + + LK D+ + + I++++ N +
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150
Query: 154 FGAMP-ELRVLTLSHN 168
F + E L L +N
Sbjct: 151 FQGLCNETLTLKLYNN 166
Score = 40.8 bits (96), Expect = 1e-04
Identities = 19/139 (13%), Positives = 51/139 (36%), Gaps = 17/139 (12%)
Query: 44 LKCLWLENN-GISKIEN--LDAQTEMRSIYMHHNLVKVMENLS---HMQLLDTINLSHN- 96
+ + + N ++ I+ L ++ + + + +K+ +L+ + + ++ N
Sbjct: 82 VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141
Query: 97 FIEKIEN--LSCLP-VLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIE- 152
++ I L TL L +N +++ L ++ + + VI+
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-YAFNGTKLDAVYLNKNKYL---TVIDK 197
Query: 153 -VF-GAMPELRVLTLSHNP 169
F G +L +S
Sbjct: 198 DAFGGVYSGPSLLDVSQTS 216
Score = 39.2 bits (92), Expect = 3e-04
Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 17/139 (12%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRS---IYMHHN--LVKVMEN-LSHMQ-LLDTINLS 94
LK L + N G+ +L + + N + + N + T+ L
Sbjct: 105 PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164
Query: 95 HNFIEKIENLS-CLPVLRTLHLSHNR-LKTIED--IEHLKDCPLLSIVDVSHNQIEDEEV 150
+N ++ + L ++L+ N+ L I+ + S++DVS +
Sbjct: 165 NNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS--GPSLLDVSQTSV---TA 219
Query: 151 IEVFGAMPELRVLTLSHNP 169
+ + L+ L +
Sbjct: 220 LP-SKGLEHLKELIARNTW 237
Score = 27.7 bits (62), Expect = 2.4
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 29/83 (34%)
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
+TL L L+TI F +P + + +S +
Sbjct: 33 TQTLKLIETHLRTIPS--------------------------HAFSNLPNISRIYVSIDV 66
Query: 170 CVGKIKNYRRMFINLCVNLRHLD 192
+ +++ F NL + H++
Sbjct: 67 TLQQLE--SHSFYNL-SKVTHIE 86
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 51.4 bits (123), Expect = 5e-08
Identities = 26/133 (19%), Positives = 55/133 (41%), Gaps = 17/133 (12%)
Query: 39 EEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNF 97
+GL+ L + +N ++ + L ++ + ++ ++N L + S ++ L +S N
Sbjct: 178 MLPSGLQELSVSDNQLASLPTLPSE--LYKLWAYNNRLTSLPALPSGLKELI---VSGNR 232
Query: 98 IEKIENLSCLPVLRTLHLSHNRLKTI-EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGA 156
+ + L L+ L +S NRL ++ L + V NQ+ + E
Sbjct: 233 LTSLPVL--PSELKELMVSGNRLTSLPMLPSGLL------SLSVYRNQLT--RLPESLIH 282
Query: 157 MPELRVLTLSHNP 169
+ + L NP
Sbjct: 283 LSSETTVNLEGNP 295
Score = 48.4 bits (115), Expect = 5e-07
Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 28/143 (19%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEK 100
+GL LW+ N ++ + L ++ + + N L + S + L +N +
Sbjct: 121 SGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLASLPALPSELCKLW---AYNNQLTS 175
Query: 101 IENLSCLPVLRTLHLSHNRLKTI-EDIEHLK--------------DCPLLSIVDVSHNQI 145
+ L L+ L +S N+L ++ L L + VS N++
Sbjct: 176 LPML--PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL 233
Query: 146 EDEEVIEVFGAMPELRVLTLSHN 168
+ EL+ L +S N
Sbjct: 234 T-----SLPVLPSELKELMVSGN 251
Score = 45.3 bits (107), Expect = 6e-06
Identities = 23/139 (16%), Positives = 42/139 (30%), Gaps = 24/139 (17%)
Query: 40 EYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQL----------LD 89
EY + W + A + +++ + N+ L +
Sbjct: 7 EYDAVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVL--NVGESGLTTLPDCLPAHIT 64
Query: 90 TINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
T+ + N + + L P LRTL +S N+L ++ LSI +
Sbjct: 65 TLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLP--VLPPGLLELSIFSNPLTHLPAL- 119
Query: 150 VIEVFGAMPELRVLTLSHN 168
L L + N
Sbjct: 120 -------PSGLCKLWIFGN 131
Score = 40.6 bits (95), Expect = 2e-04
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEK 100
+GLK L + N ++ + L +E++ + + N L + S + L + N + +
Sbjct: 221 SGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSLPMLPSGLLSLS---VYRNQLTR 275
Query: 101 I-ENLSCLPVLRTLHLSHNRLKTI 123
+ E+L L T++L N L
Sbjct: 276 LPESLIHLSSETTVNLEGNPLSER 299
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 50.7 bits (122), Expect = 5e-08
Identities = 34/186 (18%), Positives = 74/186 (39%), Gaps = 18/186 (9%)
Query: 19 PSLNDVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN 74
P L L F + + + L+ L L I IE+ + + + ++ + N
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 75 LVK-----VMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIE 127
++ LS +Q L + +EN + L L+ L+++HN +++ + E
Sbjct: 87 PIQSLALGAFSGLSSLQKLV---AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143
Query: 128 HLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNY-RRMFINLCV 186
+ + L +D+S N+I+ + ++ +L LS + + + F +
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-- 200
Query: 187 NLRHLD 192
L+ L
Sbjct: 201 RLKELA 206
Score = 43.8 bits (104), Expect = 1e-05
Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 44/142 (30%)
Query: 42 TGLKCLWLENNGISKIENLDA---QTEMRSIYMHHNLVK-----VMENLSHMQLLD-TIN 92
LK L + +N I + + T + + + N ++ + L M LL+ +++
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 93 LSHNFIEKIE-----NLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIED 147
LS N + I+ + L+ L L N+LK++ D
Sbjct: 184 LSLNPMNFIQPGAFKEIR----LKELALDTNQLKSVPD---------------------- 217
Query: 148 EEVIEVFGAMPELRVLTLSHNP 169
+F + L+ + L NP
Sbjct: 218 ----GIFDRLTSLQKIWLHTNP 235
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 50.0 bits (120), Expect = 6e-08
Identities = 24/131 (18%), Positives = 57/131 (43%), Gaps = 12/131 (9%)
Query: 47 LWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIE 102
+ LE N I I ++R I + +N + + ++ L+++ L N I ++
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96
Query: 103 N--LSCLPVLRTLHLSHNRLKTIED--IEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMP 158
L L+ L L+ N++ + + L + L+++ + N+++ F +
Sbjct: 97 KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN---LNLLSLYDNKLQTIAK-GTFSPLR 152
Query: 159 ELRVLTLSHNP 169
++ + L+ NP
Sbjct: 153 AIQTMHLAQNP 163
Score = 30.0 bits (68), Expect = 0.43
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 111 RTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPC 170
+ L N +K I L +D+S+NQI + + F + L L L N
Sbjct: 35 TEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGN-- 90
Query: 171 VGKIKNY-RRMFINLCVNLRHLD 192
KI + +F L +L+ L
Sbjct: 91 --KITELPKSLFEGL-FSLQLLL 110
Score = 28.1 bits (63), Expect = 1.6
Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHN 96
L+ L L N I+ + + + ++ N ++ + S ++ + T++L+ N
Sbjct: 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 49.5 bits (118), Expect = 2e-07
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 26/129 (20%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101
K L L N IS++ + LS +++L LSHN I +
Sbjct: 52 PRTKALSLSQNSISELRM-----------------PDISFLSELRVL---RLSHNRIRSL 91
Query: 102 EN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE 159
+ L L +SHNRL+ I + L +D+S N + V + FG + +
Sbjct: 92 DFHVFLFNQDLEYLDVSHNRLQNISC-CPMAS---LRHLDLSFNDFDVLPVCKEFGNLTK 147
Query: 160 LRVLTLSHN 168
L L LS
Sbjct: 148 LTFLGLSAA 156
Score = 46.8 bits (111), Expect = 2e-06
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 92 NLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
+LS N I ++ +S L LR L LSHNR++++ D L +DVSHN++++
Sbjct: 58 SLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQNIS 116
Query: 150 VIEVFGAMPELRVLTLSHNP--CVGKIKNYRRMFINLCVNLRHLD 192
M LR L LS N + K F NL L L
Sbjct: 117 ----CCPMASLRHLDLSFNDFDVLPVCK----EFGNL-TKLTFLG 152
Score = 36.8 bits (85), Expect = 0.004
Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 24/121 (19%)
Query: 19 PSLNDVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN 74
P L L + + + + L+ L L +N I ++ ++ + + HN
Sbjct: 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110
Query: 75 LVKVM--ENLSHMQLLDTINLSHNFIEKIENLSCLPV---------LRTLHLSHNRLKTI 123
++ + ++ ++ LD LS N + LPV L L LS + + +
Sbjct: 111 RLQNISCCPMASLRHLD---LSFN------DFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161
Query: 124 E 124
+
Sbjct: 162 D 162
Score = 35.6 bits (82), Expect = 0.007
Identities = 22/152 (14%), Positives = 53/152 (34%), Gaps = 13/152 (8%)
Query: 29 FKGYTVIENLEEYTGLKCLWLENNGISKIENLD----AQTEMRSIYMHHNLVKVMENL-- 82
+K + ++ L + N I++ + + ++T ++S+ + H +V
Sbjct: 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322
Query: 83 ---SHMQLLDTINLSHNFIEKIENL--SCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSI 137
S ++ LS + I + L+ + N + L
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF-QGCSTLKRLQT 381
Query: 138 VDVSHNQIED-EEVIEVFGAMPELRVLTLSHN 168
+ + N +++ +V + M L L +S N
Sbjct: 382 LILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Score = 34.5 bits (79), Expect = 0.020
Identities = 30/177 (16%), Positives = 56/177 (31%), Gaps = 58/177 (32%)
Query: 25 LYLHFKGYTVIE--NLEEYTGLKCLWLENNGISKIENL-DAQTEMRSIYMHHNLVKVME- 80
L +T L+ L L+ NG+ + M S+ + +
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 81 ----------------NLSHMQL-----------LDTINLSHNFIEKI-ENLSCLPVLRT 112
NLS L + ++L +N I I ++++ L L+
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQE 477
Query: 113 LHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
L+++ N+LK++ D VF + L+ + L NP
Sbjct: 478 LNVASNQLKSVPD--------------------------GVFDRLTSLQYIWLHDNP 508
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 49.1 bits (118), Expect = 2e-07
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 82 LSHMQLLDTINLSHNFIE-KIENLSCLPVLRTLHLSHNRLK-TIEDIEHLKDCPLLSIVD 139
+ I+L+ N + + + L L L +NR+ T+ + L L ++
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP--QGLTQLKFLHSLN 274
Query: 140 VSHNQIEDEEVIEVFGAMPELRVLTLSHNPC 170
VS N + E I G + V ++N C
Sbjct: 275 VSFNNLCGE--IPQGGNLQRFDVSAYANNKC 303
Score = 44.4 bits (106), Expect = 8e-06
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 21/110 (19%)
Query: 81 NLSHMQL------------LDTINLSHNFIE-KI-ENLSCLPVLRTLHLSHNRLK-TIED 125
+S +L L ++LS N +E + +HL+ N L +
Sbjct: 180 TISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239
Query: 126 IEHLKDCPLLSIVDVSHNQIEDEEVI-EVFGAMPELRVLTLSHNPCVGKI 174
+ K+ L+ +D+ +N+I + + + L L +S N G+I
Sbjct: 240 VGLSKN---LNGLDLRNNRIYGT--LPQGLTQLKFLHSLNVSFNNLCGEI 284
Score = 41.4 bits (98), Expect = 9e-05
Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 38/176 (21%)
Query: 35 IENLEEYTGLKCLWLEN-NGIS-----KIENLDAQTEMRSIYMHHNLV--KVMENLSHMQ 86
+ NL L L++ N + I L T++ +Y+ H V + + LS ++
Sbjct: 72 LANL---PYLNFLYIGGINNLVGPIPPAIAKL---TQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 87 LLDTINLSHNFIE-KI-ENLSCLPVLRTLHLSHNRLK-TI-EDIEHLKDCPLLSIVDVSH 142
L T++ S+N + + ++S LP L + NR+ I + L + + +S
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS--KLFTSMTISR 183
Query: 143 NQIEDEEVIEVFGAMPE------LRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
N++ G +P L + LS N G + N + +
Sbjct: 184 NRLT--------GKIPPTFANLNLAFVDLSRNMLEGDAS----VLFGSDKNTQKIH 227
Score = 31.4 bits (72), Expect = 0.17
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 44 LKCLWLENNGIS-----KIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNF 97
L + L N + + + I++ N L + + + L+ ++L +N
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSD---KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255
Query: 98 IE-KI-ENLSCLPVLRTLHLSHNRL 120
I + + L+ L L +L++S N L
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNL 280
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 49.2 bits (117), Expect = 3e-07
Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 30/133 (22%)
Query: 39 EEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFI 98
E L+ + +NN ++ + E + +++L + +N +
Sbjct: 137 ELPALLEYINADNNQLTMLP---------------------ELPTSLEVLS---VRNNQL 172
Query: 99 EKIENLSCLPVLRTLHLSHNRLKTI-EDIEHLKDCP-LLSIVDVSHNQIEDEEVIEVFGA 156
+ L L L +S N L+++ N+I + E +
Sbjct: 173 TFLPEL--PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI--THIPENILS 228
Query: 157 MPELRVLTLSHNP 169
+ + L NP
Sbjct: 229 LDPTCTIILEDNP 241
Score = 44.6 bits (105), Expect = 9e-06
Identities = 20/129 (15%), Positives = 49/129 (37%), Gaps = 20/129 (15%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEK 100
+ L + N + + + + + N L + E + ++ L ++ +N +
Sbjct: 80 PQITVLEITQNALISL--PELPASLEYLDACDNRLSTLPELPASLKHL---DVDNNQLTM 134
Query: 101 IENLSCLPVLRTLHLSHNRLKTI-EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE 159
+ L +L ++ +N+L + E L+ ++ V +NQ+ +
Sbjct: 135 LPEL--PALLEYINADNNQLTMLPELPTSLE------VLSVRNNQLT-----FLPELPES 181
Query: 160 LRVLTLSHN 168
L L +S N
Sbjct: 182 LEALDVSTN 190
Score = 37.6 bits (87), Expect = 0.002
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVK-----VMENLSHMQLLDTINLSHN 96
T L+ L + NN ++ + L + ++ + NL++ + N + N
Sbjct: 160 TSLEVLSVRNNQLTFLPELPES--LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN 217
Query: 97 FIEKI-ENLSCLPVLRTLHLSHNRLKTI 123
I I EN+ L T+ L N L +
Sbjct: 218 RITHIPENILSLDPTCTIILEDNPLSSR 245
Score = 35.3 bits (81), Expect = 0.009
Identities = 12/121 (9%), Positives = 35/121 (28%), Gaps = 16/121 (13%)
Query: 49 LENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLP 108
L N + + + + + L + N + +
Sbjct: 5 LPINNNFSLSQNSFYNTISGT--YADYFSAWDKWEKQALP---GENRNEAVSLLKECLIN 59
Query: 109 VLRTLHLSHNRLKTI-EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSH 167
L L+ L ++ +++ P +++++++ N + + L L
Sbjct: 60 QFSELQLNRLNLSSLPDNL-----PPQITVLEITQNALI-----SLPELPASLEYLDACD 109
Query: 168 N 168
N
Sbjct: 110 N 110
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 48.4 bits (116), Expect = 4e-07
Identities = 16/164 (9%), Positives = 43/164 (26%), Gaps = 19/164 (11%)
Query: 20 SLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISK----IENLDAQTEMRSIYMHHN- 74
+ + + +E+ Q ++ +
Sbjct: 34 QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDA-TQPGRVALELRSVP 92
Query: 75 LVKVMENLSHMQLLDTINLSHNFIEKI-ENLSCLPVLRTLHLSHNRLKTI-EDIEHLKDC 132
L + + + L + + + ++ + + L TL L+ N L+ + I L
Sbjct: 93 LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNR- 151
Query: 133 PLLSIVDVSHN--------QIEDEEVIEVFGAMPELRVLTLSHN 168
L + + + + + L+ L L
Sbjct: 152 --LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193
Score = 43.0 bits (102), Expect = 3e-05
Identities = 30/182 (16%), Positives = 62/182 (34%), Gaps = 36/182 (19%)
Query: 35 IENLEEYTGLKCLWLENNGISK----IENLDAQTEMRSIYMHHN-----------LVKVM 79
++ GL+ L L N + I +L +R + +
Sbjct: 123 MQQF---AGLETLTLARNPLRALPASIASL---NRLRELSIRACPELTELPEPLASTDAS 176
Query: 80 ENLSHMQLLDTINLSHNFIEKI-ENLSCLPVLRTLHLSHNRLKTI-EDIEHLKDCPLLSI 137
+ L ++ L I + +++ L L++L + ++ L + I HL L
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK---LEE 233
Query: 138 VDVSH-NQIEDEEVIEVFGAMPELRVLTLSHN-------PCVGKIKNYRRMFINLCVNLR 189
+D+ + +FG L+ L L + ++ ++ + CVNL
Sbjct: 234 LDLRGCTAL--RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291
Query: 190 HL 191
L
Sbjct: 292 RL 293
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 48.6 bits (116), Expect = 4e-07
Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 36/168 (21%)
Query: 38 LEEYTGLKCLWLENNGIS---------------KIENLDAQTEMRSIYMHHN------LV 76
L ++T L+ L+L NNG+ + +RSI N +
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177
Query: 77 KVMENLSHMQLLDTINLSHNFIEKI-------ENLSCLPVLRTLHLSHNRL--KTIEDI- 126
+ + +LL T+ + N I E L+ L+ L L N +
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237
Query: 127 EHLKDCPLLSIVDVSHNQIEDEEVIEVFGAM-----PELRVLTLSHNP 169
LK P L + ++ + V A L+ L L +N
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285
Score = 45.5 bits (108), Expect = 4e-06
Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 34/167 (20%)
Query: 36 ENLEEYTGLKCLWLENNGISKI------ENLDAQTEMRSIYMHHN--------------- 74
+ L + L + L +N + L T + +Y+H+N
Sbjct: 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147
Query: 75 LVKVMENLSHMQLLDTINLSHNFIEKI------ENLSCLPVLRTLHLSHNRL--KTIEDI 126
+ V + + L +I N +E + +L T+ + N + + IE +
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207
Query: 127 --EHLKDCPLLSIVDVSHNQIEDEEVI---EVFGAMPELRVLTLSHN 168
E L C L ++D+ N + P LR L L+
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254
Score = 41.2 bits (97), Expect = 1e-04
Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 18/107 (16%)
Query: 80 ENLSHMQLLDTINLSHNFIEKI------ENLSCLPVLRTLHLSHNRLKTIEDI------- 126
L + I LS N I EN++ L S ++D
Sbjct: 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85
Query: 127 --EHLKDCPLLSIVDVSHNQIEDEEVI---EVFGAMPELRVLTLSHN 168
+ L CP L V +S N + L L L +N
Sbjct: 86 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132
Score = 37.8 bits (88), Expect = 0.001
Identities = 30/166 (18%), Positives = 58/166 (34%), Gaps = 40/166 (24%)
Query: 38 LEEYTGLKCLWLENNGISKI-------ENLDAQTEMRSIYMHHNLVKVM------ENLSH 84
+ + L + + NGI E L E++ + + N + L
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242
Query: 85 MQLLDTINLSHNFI------------EKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKD- 131
L + L+ + K+EN+ L+TL L +N + ++ + LK
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIG----LQTLRLQYNEI-ELDAVRTLKTV 297
Query: 132 ----CPLLSIVDVSHNQIEDE-----EVIEVFGAMPELRVLTLSHN 168
P L ++++ N+ +E E+ EVF + L
Sbjct: 298 IDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDM 343
Score = 32.0 bits (73), Expect = 0.10
Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 26/129 (20%)
Query: 36 ENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSH 95
L+ + L+ L L + +S A +V L ++ L T+ L +
Sbjct: 238 IALKSWPNLRELGLNDCLLS---ARGAAA----------VVDAFSKLENIGLQ-TLRLQY 283
Query: 96 NFIEK--IENL-----SCLPVLRTLHLSHNRL----KTIEDI-EHLKDCPLLSIVDVSHN 143
N IE + L +P L L L+ NR +++I E + ++
Sbjct: 284 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDM 343
Query: 144 QIEDEEVIE 152
+ +E E
Sbjct: 344 EELTDEEEE 352
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 48.2 bits (114), Expect = 4e-07
Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHN--LVKVMEN-LSHMQLLDTINLSHNFI 98
+GL+C + + + +L + +Y+ + L + L + L + + + +
Sbjct: 11 SGLRCT--RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68
Query: 99 EKIEN--LSCLPVLRTLHLSHNRLKTIE 124
+ P L L+LS N L+++
Sbjct: 69 RFVAPDAFHFTPRLSRLNLSFNALESLS 96
Score = 46.7 bits (110), Expect = 2e-06
Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 96 NFIEKIENLSCLPVLRTLHLSHNR-LKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVF 154
++ + +L L L++ + + L+ +E L+ L + + + + + F
Sbjct: 19 GALDSLHHLPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFVAP-DAF 76
Query: 155 GAMPELRVLTLSHN 168
P L L LS N
Sbjct: 77 HFTPRLSRLNLSFN 90
Score = 34.3 bits (78), Expect = 0.020
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 26/108 (24%)
Query: 19 PSLNDVLYLHFKGYTVIENLEE-----YTGLKCLWLENNGISKIENLDAQTEMRSIYMHH 73
P ++ L+ + +++LE L+ L + +G+ +
Sbjct: 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-------------- 73
Query: 74 NLVKVMENLSHMQLLDTINLSHNFIEKI-ENLSCLPVLRTLHLSHNRL 120
+ L+ LS N +E + L+ L LS N L
Sbjct: 74 ---DAFHFTPRLSRLN---LSFNALESLSWKTVQGLSLQELVLSGNPL 115
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 47.9 bits (114), Expect = 5e-07
Identities = 23/179 (12%), Positives = 57/179 (31%), Gaps = 30/179 (16%)
Query: 19 PSLNDVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIENL--DAQTEMRSIYMHHN 74
P L+++ I + L+ L + N GI + ++ + + + N
Sbjct: 79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138
Query: 75 --LVKVMENL--SHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEH 128
+ + N + L+ N I++I N + + +N L+ + + +
Sbjct: 139 INIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN-DV 197
Query: 129 LKDCPLLSIVDVSHNQIED-------------------EEVIEVFGAMPELRVLTLSHN 168
I+D+S +I + + + L +L++
Sbjct: 198 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256
Score = 45.6 bits (108), Expect = 3e-06
Identities = 24/161 (14%), Positives = 46/161 (28%), Gaps = 40/161 (24%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMENL-----SHMQLLDTINLS 94
L + I+ ++ I + N V+E + S++ L I +
Sbjct: 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN--DVLEVIEADVFSNLPKLHEIRIE 87
Query: 95 H-NFIEKIEN--LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
N + I LP L+ L +S+ +K + D
Sbjct: 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-------------------------- 121
Query: 152 EVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+ +L + N + I+ F+ L L
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIER--NSFVGLSFESVILW 160
Score = 43.3 bits (102), Expect = 2e-05
Identities = 19/133 (14%), Positives = 45/133 (33%), Gaps = 14/133 (10%)
Query: 47 LWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMENLSHMQL--LDTINLSHNF-IEKI 101
+ N + I ++ + + + +K + ++ + +++ N I I
Sbjct: 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144
Query: 102 ENLS---CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI--EVFGA 156
E S L L+ N ++ I + L + +N + E + +VF
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQEIHN-SAFNGTQLDELNLSDNNNL---EELPNDVFHG 200
Query: 157 MPELRVLTLSHNP 169
+L +S
Sbjct: 201 ASGPVILDISRTR 213
Score = 36.0 bits (83), Expect = 0.006
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 12/83 (14%)
Query: 44 LKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVK-----VMENLSHMQLLDTINLSHN 96
+ +NN + ++ N + + + + +ENL ++ T NL
Sbjct: 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK-- 237
Query: 97 FIEKIENLSCLPVLRTLHLSHNR 119
K+ L L L L++
Sbjct: 238 ---KLPTLEKLVALMEASLTYPS 257
Score = 31.0 bits (70), Expect = 0.26
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 22/94 (23%)
Query: 106 CLPVLRTLHLSHNRLKTI-----EDIEHLKDCPLLSIVDVSHNQIEDEEVIE--VFGAMP 158
C R +++ I + L ++ VI+ F
Sbjct: 7 CHCSNRVFLCQESKVTEIPSDLPRNAIEL---------RFVLTKLR---VIQKGAFSGFG 54
Query: 159 ELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+L + +S N + I+ +F NL L +
Sbjct: 55 DLEKIEISQNDVLEVIE--ADVFSNL-PKLHEIR 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 41.9 bits (99), Expect = 5e-05
Identities = 29/160 (18%), Positives = 63/160 (39%), Gaps = 20/160 (12%)
Query: 23 DVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVK- 77
L L + + + T L+ L+L +N + + + ++++ N ++
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 78 ----VMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNRLKTIED--IEHL 129
V + L ++ L L N ++ + L L L L +N L+++ + L
Sbjct: 100 LPIGVFDQLVNLAELR---LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 130 KDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
L + + +NQ++ F + EL+ L L +N
Sbjct: 157 TS---LKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQ 192
Score = 41.9 bits (99), Expect = 5e-05
Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 32/133 (24%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI 101
K L L++N +S + + K L+ ++LL L+ N ++ +
Sbjct: 37 ADTKKLDLQSNKLSSLPS-----------------KAFHRLTKLRLLY---LNDNKLQTL 76
Query: 102 EN--LSCLPVLRTLHLSHNRLKTIED--IEHLKDCPLLSIVDVSHNQIEDEEVIE--VFG 155
L L TL ++ N+L+ + + L + L+ + + NQ++ + VF
Sbjct: 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN---LAELRLDRNQLKS---LPPRVFD 130
Query: 156 AMPELRVLTLSHN 168
++ +L L+L +N
Sbjct: 131 SLTKLTYLSLGYN 143
Score = 37.3 bits (87), Expect = 0.002
Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVK-----VMENLSHMQLLDTINLS 94
L L L+ N + + D+ T++ + + +N ++ V + L+ L + L
Sbjct: 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS---LKELRLY 165
Query: 95 HNFIEKIEN--LSCLPVLRTLHLSHNRLKTI 123
+N ++++ L L+TL L +N+LK +
Sbjct: 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 1e-04
Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 19/80 (23%)
Query: 132 CPLLSIVDVSHNQIEDEEVIEVFGA-MPELRVLTLSHNPCVGKIKNYRRMFI-------- 182
P+LSI +++ Q+ ++ + + +P + + +S + N + +
Sbjct: 336 SPMLSISNLTQEQV--QDYVNKTNSHLPAGKQVEIS-------LVNGAKNLVVSGPPQSL 386
Query: 183 -NLCVNLRHLDDYPVFDKDR 201
L + LR D+ R
Sbjct: 387 YGLNLTLRKAKAPSGLDQSR 406
Score = 30.0 bits (67), Expect = 0.70
Identities = 38/256 (14%), Positives = 73/256 (28%), Gaps = 92/256 (35%)
Query: 5 SLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENN--GISKIENLDA 62
S+ I +N P L +HF G E Y+ + E G K E +
Sbjct: 1660 SILDIVINN-----PV---NLTIHFGGEKGKRIRENYSAMIF---ETIVDGKLKTEKIFK 1708
Query: 63 Q-TEMRSIYMHHN---------------------LVKVMEN------------------- 81
+ E + Y + + +++
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA 1768
Query: 82 -LSH----MQLLDTINL-------SHNFIEKIEN-------LSCLPVLRTLHLSHNRLKT 122
L+ M + + + + + E ++ P S L+
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 123 I-EDIEHLKDCPLLSIV--DVSHNQIEDEEVIEVFGAMPELRVLT--LSHNPCVGKIKNY 177
+ E + L+ IV +V + Q V G + L +T L+ K++
Sbjct: 1829 VVERVGKRTGW-LVEIVNYNVENQQY----VAA--GDLRALDTVTNVLNFI----KLQKI 1877
Query: 178 RRMFINLCVNLRHLDD 193
I L +L L++
Sbjct: 1878 D--IIELQKSL-SLEE 1890
Score = 29.2 bits (65), Expect = 0.98
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 23/63 (36%)
Query: 110 LRTLHLSHNRLKTIEDIEH--------------LKDCPLLSIVDVSHNQIEDEE---VIE 152
R L LSH +EH L++ + + + D+E E
Sbjct: 6 TRPLTLSHG------SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 153 VFG 155
+ G
Sbjct: 60 LVG 62
Score = 28.5 bits (63), Expect = 2.1
Identities = 28/153 (18%), Positives = 49/153 (32%), Gaps = 60/153 (39%)
Query: 25 LYLHF--KGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIY-MHHNLVKVMEN 81
L F +G N ++Y + E+R +Y +H LV
Sbjct: 156 LVAIFGGQG-----NTDDY------------------FE---ELRDLYQTYHVLVG---- 185
Query: 82 LSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNR-----LKTIE---DIEHLKD-- 131
D I S E + L + + L+ D ++L
Sbjct: 186 -------DLIKFSA---ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 132 --CPLLSIVDVSHNQIEDEEVIEVFGAMP-ELR 161
CPL+ ++ ++H + ++ G P ELR
Sbjct: 236 ISCPLIGVIQLAHYVV----TAKLLGFTPGELR 264
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 40.7 bits (96), Expect = 1e-04
Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 28/159 (17%)
Query: 38 LEEYTGLKCLWLENNGISKI------ENLDAQTEMRSIYMHHN------LVKVMENLSHM 85
L+ L+ L LE +S L A+ + + + + +N + + + L
Sbjct: 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197
Query: 86 QL-LDTINLSHNFIEK------IENLSCLPVLRTLHLSHNRLKTIEDIEHL-----KDCP 133
L+ + L + ++ LR L L N+L + L
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD-VGMAELCPGLLHPSS 256
Query: 134 LLSIVDVSHNQIEDE---EVIEVFGAMPELRVLTLSHNP 169
L + + I + ++ V A L+ L+L+ N
Sbjct: 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295
Score = 40.3 bits (95), Expect = 2e-04
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 20/104 (19%)
Query: 82 LSHMQLLDTINLSHNFI---------EKIENLSCLPVLRTLHLSHNRLKTIEDIEH---- 128
L L +NL N + + ++ SC ++ L L + L T
Sbjct: 52 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC--KIQKLSLQNCCL-TGAGCGVLSST 108
Query: 129 LKDCPLLSIVDVSHNQIEDEEVIEVFGAM----PELRVLTLSHN 168
L+ P L + +S N + D + + + L L L +
Sbjct: 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152
Score = 38.8 bits (91), Expect = 6e-04
Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 32/156 (20%)
Query: 42 TGLKCLWLENNGISKI------ENLDAQTEMRSIYMHHN------LVKVMENLSHMQL-L 88
+ L+ LW+ GI+ L A+ ++ + + N + E L L
Sbjct: 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315
Query: 89 DTINLSHNFIEKI------ENLSCLPVLRTLHLSHNRLKTIEDI------EHLKDC-PLL 135
+++ + L+ L L +S+NR +ED + L +L
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR---LEDAGVRELCQGLGQPGSVL 372
Query: 136 SIVDVSHNQIEDE---EVIEVFGAMPELRVLTLSHN 168
++ ++ + D + A LR L LS+N
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408
Score = 38.4 bits (90), Expect = 0.001
Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 14/101 (13%)
Query: 82 LSHMQLLDTINLSHNFI--EKIENLS-----CLPVLRTLHLSHNRL--KTIEDI-EHLKD 131
L+ + L + +S+N + + L VLR L L+ + + + L
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396
Query: 132 CPLLSIVDVSHNQIEDEEVIEVFGAMPE----LRVLTLSHN 168
L +D+S+N + D ++++ ++ + L L L
Sbjct: 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437
Score = 38.0 bits (89), Expect = 0.001
Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 88 LDTINLSHNFI--EKIENL-SCLPVLRTLHLSHNRLKTIEDIEH----LKDCPLLSIVDV 140
+ ++++ + + L L + + L L T + L+ P L+ +++
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELNL 63
Query: 141 SHNQIEDEEVIEVFGAMPE----LRVLTLSHN 168
N++ D V V + ++ L+L +
Sbjct: 64 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 95
Score = 35.3 bits (82), Expect = 0.010
Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 33/161 (20%)
Query: 38 LEEYTGLKCLWLENNGISK--IENL-----DAQTEMRSIYMHHNLV------KVMENLSH 84
L L L L +N + + + +++ + + + + + L
Sbjct: 52 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT 111
Query: 85 MQLLDTINLSHNFI---------EKIENLSCLPVLRTLHLSHNRLKTIEDIEH----LKD 131
+ L ++LS N + E + + C L L L + L + E L+
Sbjct: 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQC--RLEKLQLEYCSL-SAASCEPLASVLRA 168
Query: 132 CPLLSIVDVSHNQIEDEEVIEVFGAMPE----LRVLTLSHN 168
P + VS+N I + V + + + L L L
Sbjct: 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209
Score = 27.6 bits (62), Expect = 3.1
Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 34/142 (23%)
Query: 38 LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
L + L L + NN ++E+ + L + + +L + L+
Sbjct: 337 LAQNRFLLELQISNN---RLEDAGVRE----------LCQGLGQPGS--VLRVLWLADCD 381
Query: 98 IEKI------ENLSCLPVLRTLHLSHNRLKTIED------IEHLKDC-PLLSIVDVSHNQ 144
+ L LR L LS+N + D +E ++ LL + +
Sbjct: 382 VSDSSCSSLAATLLANHSLRELDLSNNC---LGDAGILQLVESVRQPGCLLEQLVLYDIY 438
Query: 145 IEDE---EVIEVFGAMPELRVL 163
+E + + P LRV+
Sbjct: 439 WSEEMEDRLQALEKDKPSLRVI 460
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 40.3 bits (94), Expect = 2e-04
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 5/90 (5%)
Query: 105 SCLPVLRTLHLSHNRLKTIEDIEHL-KDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVL 163
P +R + L + + E + + CP L +++ + + +P LR L
Sbjct: 460 QYSPNVRWMLLGYVGE-SDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518
Query: 164 TLSHNPCVGKIKNYRRMFINL-CVNLRHLD 192
+ + M + N+ +
Sbjct: 519 WVQG--YRASMTGQDLMQMARPYWNIELIP 546
Score = 38.4 bits (89), Expect = 0.001
Identities = 16/119 (13%), Positives = 42/119 (35%), Gaps = 4/119 (3%)
Query: 74 NLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCP 133
LV + ++++ +L+ + + ++ + + L + + E
Sbjct: 234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAA 293
Query: 134 LLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+ +D+ + +E E+ + P L VL + +G + C L+ L
Sbjct: 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN--VIG--DRGLEVLAQYCKQLKRLR 348
Score = 30.7 bits (69), Expect = 0.34
Identities = 10/91 (10%), Positives = 23/91 (25%), Gaps = 3/91 (3%)
Query: 83 SHMQLLDTINLSHNFI--EKIENL-SCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVD 139
+ + + L + E + P L+ L + + P L +
Sbjct: 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519
Query: 140 VSHNQIEDEEVIEVFGAMPELRVLTLSHNPC 170
V + + A P + +
Sbjct: 520 VQGYRASMTGQDLMQMARPYWNIELIPSRRV 550
Score = 29.5 bits (66), Expect = 0.83
Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 18/129 (13%)
Query: 82 LSHMQLLDTINLSHNFIEK-IENL-SCLPVLRTLHLSHNRLKTIEDIEHL---------- 129
+ L+ + + ++ +E L L+ L + + + E
Sbjct: 314 IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373
Query: 130 -KDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYR-----RMFIN 183
+ C L + V + I +E + + + L L +I + R +
Sbjct: 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433
Query: 184 LCVNLRHLD 192
C LR
Sbjct: 434 GCKKLRRFA 442
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 40.3 bits (93), Expect = 2e-04
Identities = 24/169 (14%), Positives = 56/169 (33%), Gaps = 32/169 (18%)
Query: 17 LTPSLNDVLYLHFKGYTVIENLE----EYTGLKCLWLENNGISKIENLDAQTEMRSIYMH 72
L+P L+ + L+ NL LK L + + G+ + + I
Sbjct: 164 LSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPD-------SVVEDI--- 213
Query: 73 HNLVKVMENLSHMQLLDTINLSHNF--------IEKIENLSCLPVLRTLHLSHNRL--KT 122
+ +L +++ L ++ + + P L+ L +
Sbjct: 214 -----LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV 268
Query: 123 IEDIEHLKDCPLLSIVDVSHNQIED---EEVIEVFGAMPELRVLTLSHN 168
+E P L +D+S + D +++ + L+ + + +N
Sbjct: 269 VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317
Score = 37.2 bits (85), Expect = 0.002
Identities = 18/112 (16%), Positives = 47/112 (41%), Gaps = 25/112 (22%)
Query: 44 LKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFI----- 98
LK L + + + +V++ + L+T+++S +
Sbjct: 254 LKWLGIVDAEEQ-----------------NVVVEMFLESDILPQLETMDISAGVLTDEGA 296
Query: 99 -EKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEE 149
++++ + L+ +++ +N L + E + L+ L +DVS +Q D++
Sbjct: 297 RLLLDHVDKIKHLKFINMKYNYL-SDEMKKELQKS-LPMKIDVSDSQEYDDD 346
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 40.0 bits (94), Expect = 2e-04
Identities = 24/124 (19%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 47 LWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSC 106
L+ ++ + + I +++ +K ++ + ++ + + L N + I L
Sbjct: 24 ANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKE 83
Query: 107 LPVLRTLHLSHNRLKTIED--IEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLT 164
L L L L+ N+L+++ + + L + L + + NQ++ VF + L L
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTN---LKELVLVENQLQSLPD-GVFDKLTNLTYLN 139
Query: 165 LSHN 168
L+HN
Sbjct: 140 LAHN 143
Score = 38.8 bits (91), Expect = 6e-04
Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 15/127 (11%)
Query: 10 CKDNKLYLTPSLN-----DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQT 64
K + + N D + + ++ ++ ++ L L N + I L T
Sbjct: 26 LKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELT 85
Query: 65 EMRSIYMHHNL-----VKVMENLSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSH 117
+ + + N V + L++++ L L N ++ + + L L L+L+H
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKEL---VLVENQLQSLPDGVFDKLTNLTYLNLAH 142
Query: 118 NRLKTIE 124
N+L+++
Sbjct: 143 NQLQSLP 149
Score = 31.5 bits (72), Expect = 0.15
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 26/116 (22%)
Query: 25 LYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHNLVK--- 77
L L + N ++ T LK L L N + + + D T + + + HN ++
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Query: 78 --VMENLSHMQLLDTINLSHNFIEKIENLSCLPV--------LRTLHLSHNRLKTI 123
V + L+++ LD LS+N L LP L+ L L N+LK++
Sbjct: 150 KGVFDKLTNLTELD---LSYN------QLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Score = 28.4 bits (64), Expect = 1.4
Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 64 TEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTI 123
E + V + + +D I +++ I+ ++ + LP +R L L N+L I
Sbjct: 19 AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI 78
Query: 124 EDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
++ L + L+ + ++ NQ++ VF + L+ L L N
Sbjct: 79 SALKELTN---LTYLILTGNQLQSLPN-GVFDKLTNLKELVLVEN 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 38.9 bits (91), Expect = 6e-04
Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 33/183 (18%)
Query: 42 TGLKCLWLENNGISKI------ENL-DAQTEMRSIYMHHN------LVKVMENLSHMQ-L 87
+ L L N ++ + L + S+ + N ++ S +
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226
Query: 88 LDTINLSHNFIEK------IENLSCLPVLRTLHLSHNRLKTIED------IEHLKDCPLL 135
+ ++NL N + L L+T++L ++ +K + + +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286
Query: 136 SIVDVSHNQIEDEEVIEVFGAMPE----LRVLTLSHNPCVGKIKNYRRMFINLCVN--LR 189
+VD + +I I + + E V +L + C+ + ++ +L + LR
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQ-CLIFAQKHQTNIEDLNIPDELR 345
Query: 190 HLD 192
Sbjct: 346 ESI 348
Score = 34.7 bits (80), Expect = 0.014
Identities = 20/158 (12%), Positives = 58/158 (36%), Gaps = 32/158 (20%)
Query: 42 TGLKCLWLENNGISK------IENLDAQ-TEMRSIYMHHN------LVKVMENLSHMQL- 87
+ L L N S + + S+ + N ++++ L+ +
Sbjct: 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168
Query: 88 LDTINLSHNFI---------EKIENLSCLPVLRTLHLSHNRL--KTIEDI-EHLKDCP-L 134
++++NL N + + + ++ + +L LS N L K+ ++ P
Sbjct: 169 VNSLNLRGNNLASKNCAELAKFLASIPA--SVTSLDLSANLLGLKSYAELAYIFSSIPNH 226
Query: 135 LSIVDVSHNQIEDE---EVIEVFGAMPELRVLTLSHNP 169
+ +++ N + + + ++ L+ + L ++
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264
Score = 34.7 bits (80), Expect = 0.016
Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 21/119 (17%)
Query: 71 MHHNLVK------VMENLSHMQLLDTINLSHNFI--EKIENL-----SCLPVLRTLHLSH 117
M++ L V E S + +++LS N + L + + +L+LS
Sbjct: 1 MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60
Query: 118 NRL--KTIEDI-EHLKDCPL-LSIVDVSHNQIEDEEVIEVFGAMPE----LRVLTLSHN 168
N L K +++ + L P ++ +++S N + + E+ + + VL L N
Sbjct: 61 NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN 119
Score = 32.0 bits (73), Expect = 0.12
Identities = 22/156 (14%), Positives = 56/156 (35%), Gaps = 29/156 (18%)
Query: 42 TGLKCLWLENNGISK--IENL-----DAQTEMRSIYMHHN------LVKVMENLSHMQL- 87
+ L L N + + L + S+ + N ++++ L+ +
Sbjct: 51 ASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFT 110
Query: 88 LDTINLSHNFIEK--IENL-----SCLPVLRTLHLSHNRL--KTIEDI-EHLKDCPL-LS 136
+ ++L N + + +L+L N L K+ +++ + L P ++
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170
Query: 137 IVDVSHNQIEDEEVIEVFGAMPE----LRVLTLSHN 168
+++ N + + E+ + + L LS N
Sbjct: 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 38.1 bits (89), Expect = 8e-04
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 25/93 (26%)
Query: 47 LWLENNGISKIEN---LDAQTEMRSIYMHHNLVK-----VMENLSHMQLLDTINLSHNFI 98
L L +N + +I + + + + N + E SH+Q L L N
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL---QLGEN-- 88
Query: 99 EKIENLSCLPV--------LRTLHLSHNRLKTI 123
+ + L+TL+L N++ +
Sbjct: 89 ----KIKEISNKMFLGLHQLKTLNLYDNQISCV 117
Score = 31.5 bits (72), Expect = 0.13
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 89 DTINLSHNFIEKIEN---LSCLPVLRTLHLSHNRLKTIED--IEHLKDCPLLSIVDVSHN 143
+ L+ N + +I + LP L L L N+L IE E + + + N
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH---IQELQLGEN 88
Query: 144 QIEDEEVIEVFGAMPELRVLTLSHN 168
+I++ ++F + +L+ L L N
Sbjct: 89 KIKEISN-KMFLGLHQLKTLNLYDN 112
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 37.7 bits (88), Expect = 0.001
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 17/88 (19%)
Query: 47 LWLENNGISKIEN-LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIEN 103
L+L+ N + + L + I + +N + + N S+M L T+ LS+N
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN------R 89
Query: 104 LSCLPV--------LRTLHLSHNRLKTI 123
L C+P LR L L N + +
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDISVV 117
Score = 26.9 bits (60), Expect = 3.6
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 93 LSHNFIEKIEN-LSCLPVLRTLHLSHNRLKTIED--IEHLKDCPLLSIVDVSHNQIEDEE 149
L N + LS L + LS+NR+ T+ + ++ L + +S+N++
Sbjct: 38 LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ---LLTLILSYNRLRCIP 94
Query: 150 VIEVFGAMPELRVLTLSHN 168
F + LR+L+L N
Sbjct: 95 P-RTFDGLKSLRLLSLHGN 112
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 37.6 bits (87), Expect = 0.002
Identities = 10/67 (14%), Positives = 20/67 (29%)
Query: 104 LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVL 163
LS LR L + + + + + +S + + MP+L V
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVE 536
Query: 164 TLSHNPC 170
+
Sbjct: 537 VIDERGA 543
Score = 37.6 bits (87), Expect = 0.002
Identities = 15/110 (13%), Positives = 37/110 (33%), Gaps = 5/110 (4%)
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHL-KDCPLLSIVDVSH- 142
+ + +IE + S L + L + T + +E + K ++ +S
Sbjct: 84 LVPDGWGGYVYPWIEAM--SSSYTWLEEIRLKRMVV-TDDCLELIAKSFKNFKVLVLSSC 140
Query: 143 NQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+ + + L+ L L + ++ F + +L L+
Sbjct: 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN 190
Score = 37.2 bits (86), Expect = 0.003
Identities = 19/128 (14%), Positives = 48/128 (37%), Gaps = 12/128 (9%)
Query: 71 MHHNLVKVMENLSHMQLLDTINLSHN-----FIEKIENLSCLPVLRTLHLSHNRLKTIED 125
L +++ ++ L T + + LS LR LS
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELR--CLSGFWDAVPAY 280
Query: 126 IEHL-KDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINL 184
+ + C L+ +++S+ ++ +++++ P+L+ L + ++ + +
Sbjct: 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLE----VLAST 336
Query: 185 CVNLRHLD 192
C +LR L
Sbjct: 337 CKDLRELR 344
Score = 36.8 bits (85), Expect = 0.003
Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 11/123 (8%)
Query: 75 LVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIED---IEHLKD 131
+ K +N + L S + + I + L+ L L + + +
Sbjct: 125 IAKSFKNFKVLVLSSCEGFSTDGLAAI--AATCRNLKELDLRESDVDDVSGHWLSHFPDT 182
Query: 132 CPLLSIVDVS--HNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLR 189
L +++S +++ + + P L+ L L+ + K+ + L
Sbjct: 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT----LLQRAPQLE 238
Query: 190 HLD 192
L
Sbjct: 239 ELG 241
Score = 29.9 bits (67), Expect = 0.71
Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 16/105 (15%)
Query: 104 LSCLPVLRTLHLSHNRLKTIEDIEHLKD---------CPLLSIVDVSHNQIEDEEVIEVF 154
S LR L + + +E L + CP L V Q+ + +I +
Sbjct: 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA 393
Query: 155 GAMPELRVLTLSH-------NPCVGKIKNYRRMFINLCVNLRHLD 192
P + L + + + C +LR L
Sbjct: 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438
Score = 29.5 bits (66), Expect = 0.75
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 5/93 (5%)
Query: 103 NLSCLPVLRTLHLSHNRLKTIEDI---EHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE 159
L P +L + L + + + D+ + + +
Sbjct: 72 ELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKN 131
Query: 160 LRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+VL LS + C NL+ LD
Sbjct: 132 FKVLVLSSCEGFS--TDGLAAIAATCRNLKELD 162
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 37.2 bits (86), Expect = 0.002
Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 15/124 (12%)
Query: 79 MENLSHMQLLDTINLSH------NFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHL--K 130
+ L+ L +NLS ++ + LS L L+LS T + ++
Sbjct: 135 VNTLAKNSNLVRLNLSGCSGFSEFALQTL--LSSCSRLDELNLSWCFDFTEKHVQVAVAH 192
Query: 131 DCPLLSIVDVS--HNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNL 188
++ +++S ++ ++ + P L L LS + +KN L
Sbjct: 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV---MLKNDCFQEFFQLNYL 249
Query: 189 RHLD 192
+HL
Sbjct: 250 QHLS 253
Score = 34.9 bits (80), Expect = 0.012
Identities = 16/89 (17%), Positives = 31/89 (34%)
Query: 105 SCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLT 164
P L L LS + + + + L + +S E + G +P L+ L
Sbjct: 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278
Query: 165 LSHNPCVGKIKNYRRMFINLCVNLRHLDD 193
+ G ++ + +L +N H
Sbjct: 279 VFGIVPDGTLQLLKEALPHLQINCSHFTT 307
Score = 31.4 bits (71), Expect = 0.18
Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 104 LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVL 163
L + R + + + +D+S++ IE + + +L+ L
Sbjct: 64 TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123
Query: 164 TLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
+L ++ + + NL L+
Sbjct: 124 SLEG--L--RLSDPIVNTLAKNSNLVRLN 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 36.0 bits (83), Expect = 0.004
Identities = 19/128 (14%), Positives = 49/128 (38%), Gaps = 5/128 (3%)
Query: 39 EEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFI 98
L KI+ +DA T+ + + + ++ ++ + ++L + +
Sbjct: 45 RWQKDYNHLPTGPLDKYKIQAIDA-TDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL 103
Query: 99 EKIENLSCLPV-LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSH-NQIEDEE--VIEVF 154
E++ L L + + + T + I L L + +S ++++E V
Sbjct: 104 ERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFK 163
Query: 155 GAMPELRV 162
++P L +
Sbjct: 164 TSLPSLEL 171
Score = 31.3 bits (71), Expect = 0.11
Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 7/112 (6%)
Query: 88 LDTINLSHNFI--EKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKD----CPLLSIVDVS 141
+ I+ + + I +++ L + + L +E L + +++
Sbjct: 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII 122
Query: 142 HNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLR-HLD 192
++ I L+ L LS P V + + + F +L LD
Sbjct: 123 SCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKLD 174
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.004
Identities = 40/214 (18%), Positives = 72/214 (33%), Gaps = 63/214 (29%)
Query: 3 KASL-RKICKDNKLYLTPSLNDVLYLHFKGY----TVIENLEE-YTGLKCLWLENNGIS- 55
K + +C K+ + +L+ K TV+E L++ + W + S
Sbjct: 163 KTWVALDVCLSYKVQCKMD-FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 56 --KIENLDAQTEMRSIYMHHNLVK---VMENLSHMQLLDTINLS---------------- 94
K+ Q E+R + V+ N+ + + + NLS
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 95 ------HNFIEKI-------ENLS-----------CLP--VLRT--LHLS------HNRL 120
H ++ E S LP VL T LS + L
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 121 KTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVF 154
T ++ +H+ L +I++ S N +E E ++F
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Score = 35.2 bits (80), Expect = 0.013
Identities = 36/202 (17%), Positives = 63/202 (31%), Gaps = 81/202 (40%)
Query: 1 MTKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIEN--------LEEYTGLKCLWLENN 52
+ K SL + K K T S+ +YL K +EN ++ Y K +++
Sbjct: 411 LHKYSL--VEKQPKES-TISIPS-IYLELKVK--LENEYALHRSIVDHYNIPKTF--DSD 462
Query: 53 GIS-----------------KIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSH 95
+ IE+ + T R ++ L
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF----------------------LDF 500
Query: 96 NFIE-KIENL--------SCLPVLRTL-----HLSHN------RLKTIEDI-----EHLK 130
F+E KI + S L L+ L ++ N + I D E+L
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 131 DCPLLSIVDVSHNQIEDEEVIE 152
++ ++ EDE + E
Sbjct: 561 CSKYTDLLRIALMA-EDEAIFE 581
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 33.5 bits (77), Expect = 0.030
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 26/122 (21%)
Query: 19 PSLNDVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN 74
P+ L L + N +E T L L+L N + + N + T + + + N
Sbjct: 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86
Query: 75 LVK-----VMENLSHMQLLDTINLSHNFIEKIENLSCLPV--------LRTLHLSHNRLK 121
++ V + L+ ++ L L+ N L LP L+ L L N+LK
Sbjct: 87 QLQSLPNGVFDKLTQLKELA---LNTN------QLQSLPDGVFDKLTQLKDLRLYQNQLK 137
Query: 122 TI 123
++
Sbjct: 138 SV 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 33.5 bits (77), Expect = 0.036
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 29/139 (20%)
Query: 42 TGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFI--E 99
+ L+ L L ++ + + + V+ S LD +NL+ +
Sbjct: 72 SSLRQLNLAGVRMT-----PVKCTV--------VAAVL--GSGRHALDEVNLASCQLDPA 116
Query: 100 KIENL-SCLPVLRTLHLSHNRLKTIEDIEHL------KDCPLLSIVDVSHNQIEDEEVI- 151
+ L R L L N L E + L C + ++ +S+N + V
Sbjct: 117 GLRTLLPVFLRARKLGLQLNSLGP-EACKDLRDLLLHDQCQITTL-RLSNNPLTAAGVAV 174
Query: 152 --EVFGAMPELRVLTLSHN 168
E + L+L H
Sbjct: 175 LMEGLAGNTSVTHLSLLHT 193
Score = 32.0 bits (73), Expect = 0.12
Identities = 17/169 (10%), Positives = 43/169 (25%), Gaps = 38/169 (22%)
Query: 38 LEEYTGLKCLWLENNGISKI------ENLDAQTEMRSIYMHHNLVK------VMENLSHM 85
L T + L L + G+ LD +++ + + +N +
Sbjct: 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREH 238
Query: 86 QLLDTINLSHNFI---------EKIENLSCLPVLRTLHLSHNRL--------------KT 122
L+ ++L N + + + +
Sbjct: 239 PSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLN 298
Query: 123 IEDIEHLKDCPLLSIVDVSHNQIEDEEVI---EVFGAMPELRVLTLSHN 168
D ++ L + D+ ++ ++ E+R L
Sbjct: 299 SWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLG 347
Score = 31.6 bits (72), Expect = 0.14
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 80 ENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRL--KTIEDI-EHLKDC-PLL 135
+ L +LLD + + F + + L LR L+L+ R+ + L L
Sbjct: 44 QVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHAL 103
Query: 136 SIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHN 168
V+++ Q++ + + R L L N
Sbjct: 104 DEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136
Score = 30.1 bits (68), Expect = 0.49
Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 24/131 (18%)
Query: 42 TGLKCLWLENNGISKI------ENLDAQTEMRSIYMHHNLVK------VMENLSHMQLLD 89
+ L L NN ++ E L T + + + H + + L + L
Sbjct: 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ 214
Query: 90 TINLSHNFIEKI------ENLSCLPVLRTLHLSHNRLKT------IEDIEHLKDCPLLSI 137
+N+++N P L LHL N L + + + + +
Sbjct: 215 ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVV 274
Query: 138 VDVSHNQIEDE 148
+ +
Sbjct: 275 SLTEGTAVSEY 285
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 31.2 bits (71), Expect = 0.16
Identities = 16/84 (19%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 47 LWLENNGISKIEN--LDAQTEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIE 102
L L++ G++ + + T++ + + +N ++ + + L T+ L++N + +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 103 NL--SCLPVLRTLHLSHNRLKTIE 124
L L L+L N+LK++
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLP 123
Score = 30.8 bits (70), Expect = 0.25
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 24/97 (24%)
Query: 42 TGLKCLWLENNGISKIENL--DAQTEMRSIYMHHNLVK-----VMENLSHMQLLDTINLS 94
T L L L NN ++ + D T++ +Y+ N +K V + L+ ++ L L+
Sbjct: 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR---LN 139
Query: 95 HNFIEKIENLSCLPV--------LRTLHLSHNRLKTI 123
N L +P L+TL LS N+L+++
Sbjct: 140 TN------QLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 30.7 bits (70), Expect = 0.18
Identities = 24/165 (14%), Positives = 50/165 (30%), Gaps = 34/165 (20%)
Query: 3 KASLRKICKDNKLYLTPSLNDVLYLHFKGYTVI-ENLEEYTGLKCLWLENNGISKIENLD 61
+ +L++I ++ +LN+++ + E L+ T +K + + +
Sbjct: 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN---DPV 81
Query: 62 AQT--EMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEK------IENLSCLPVLRTL 113
A EM L L ++N+ NFI +E L L L
Sbjct: 82 AFALAEM---------------LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIEL 126
Query: 114 HLSHNRLKTIED------IEHLKDCPLLSIVDVSHNQIEDEEVIE 152
+ + + + + L+ L Q
Sbjct: 127 RIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLRAS 170
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 30.0 bits (68), Expect = 0.43
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 19 PSLNDVLYLHFKGYTVIEN--LEEYTGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN 74
P+ +LYLH T +E + LK L+L +N + + D+ T++ + + N
Sbjct: 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98
Query: 75 LVK-----VMENLSHMQLLDTINLSHNFIEKI-ENLSCLPVLRTLHLSHNRLKTIED 125
+ V + L H++ L + N + ++ + L L L L N+LK+I
Sbjct: 99 QLTVLPSAVFDRLVHLKELF---MCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH 152
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered,
protein-ADP complex, cell cycle, hydrolase; HET: ADP;
2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A*
1ion_A*
Length = 237
Score = 29.8 bits (68), Expect = 0.50
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 20/73 (27%)
Query: 86 QLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLK------TIEDIEHLKDCPLLSIVD 139
L DT+ + ++ L L NR E E + + PLL+++
Sbjct: 147 CLTDTMKV----GIVLKK----AGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPLLAVI- 197
Query: 140 VSHNQIEDEEVIE 152
ED + E
Sbjct: 198 -----PEDPAIRE 205
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 27.1 bits (60), Expect = 2.6
Identities = 11/60 (18%), Positives = 15/60 (25%), Gaps = 26/60 (43%)
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
L L+ N L + + A+P LR L NP
Sbjct: 33 TTELVLTGNNLTALPP--------------------------GLLDALPALRTAHLGANP 66
Score = 26.7 bits (59), Expect = 3.6
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 42 TGLKCLWLENNGISKIEN--LDAQTEMRSIYMHHN 74
L L N ++ + LDA +R+ ++ N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 25.9 bits (57), Expect = 7.0
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 92 NLSHNFIEKIEN--LSCLPVLRTLHLSHN 118
L+ N + + L LP LRT HL N
Sbjct: 37 VLTGNNLTALPPGLLDALPALRTAHLGAN 65
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI,
protein structu initiative, midwest center for
structural genomics; HET: MSE; 1.40A {Agrobacterium
tumefaciens str} SCOP: d.61.1.4
Length = 243
Score = 27.7 bits (61), Expect = 2.7
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 11/69 (15%)
Query: 26 YLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHM 85
+L G TV+ +L E + + I + + L + HM
Sbjct: 37 FLPEPGNTVVCHLVEGSQT------ESAIVST-----RQRFLDMPEASQLAFTPVSSLHM 85
Query: 86 QLLDTINLS 94
+ + S
Sbjct: 86 TVFQGVIES 94
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 27.2 bits (61), Expect = 3.1
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 24/94 (25%)
Query: 47 LWLENNGISKIEN--LDAQTEMRSIYMHHNLVK-----VMENLSHMQLLDTINLSHNFIE 99
L LE+N + + + D T++ + + N ++ V + L+ + +L L N
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY---LHEN--- 86
Query: 100 KIENLSCLPV--------LRTLHLSHNRLKTIED 125
L LP L+ L L N+LK++ D
Sbjct: 87 ---KLQSLPNGVFDKLTQLKELALDTNQLKSVPD 117
>2qtd_A Uncharacterized protein MJ0327; ribonuclease H-like motif fold,
iron-molybdenum cofactor, ST genomics; HET: MSE PG4;
1.70A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 2kla_A
Length = 105
Score = 26.5 bits (59), Expect = 3.3
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 127 EHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPEL 160
+DC IV + N+++ +VI + +
Sbjct: 18 NSFEDCKYFLIVRIDDNEVKSTKVIFNDESGKKS 51
>2g0t_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Length = 350
Score = 27.0 bits (59), Expect = 4.6
Identities = 8/57 (14%), Positives = 18/57 (31%)
Query: 117 HNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGK 173
H ++ + + I+D+ +E + + V + VGK
Sbjct: 127 HFKISQQTEFLKIAHENGTRIIDIRIPPLELDVLRGGIYRKKIKVVGVFGTDCVVGK 183
>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered
Se-Met, structural genomics, putative ribosomal protein,
PSI; HET: MSE; 1.50A {Escherichia coli} SCOP: c.51.4.1
PDB: 2q16_A* 2pyu_A*
Length = 221
Score = 26.7 bits (60), Expect = 5.5
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 148 EEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFD 198
E + G M ++ VL + N GK++ + + +++ D V
Sbjct: 14 RENLYFQGHMQKV-VLA-TGNV--GKVRELASLLSDFGLDIVAQTDLGVDS 60
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding,
cytoplasm, ligase, nucleotide-binding, phosphoprotein,
polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Length = 521
Score = 26.4 bits (59), Expect = 7.5
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 29 FKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLL 88
F+ ++E LE+ G+K + E + + + I + V+ + +LL
Sbjct: 323 FRRINMVEELEKALGMK-----LPETNLFETEETRKILDDICVAKA-VECPPPRTTARLL 376
Query: 89 DTINLSHNFIEKIE 102
D + E +E
Sbjct: 377 DKL-----VGEFLE 385
>1r0v_A ENDA, tRNA-intron endonuclease, intron endonuclease; RNA
splicing, X-RAY crystallography, translati hydrolase;
2.00A {Archaeoglobus fulgidus} SCOP: c.52.2.1 c.52.2.1
d.75.1.1 PDB: 1r11_A 1rlv_A 2gjw_A* 3p1y_A
Length = 305
Score = 26.2 bits (57), Expect = 8.2
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 11 KDNKLYLTPSLNDVLYLHFKGYTVIENLEE 40
+ +K+YL P +V+YL KG LE+
Sbjct: 24 RGDKIYLHPL--EVVYLQIKGIESFGELED 51
>3tqu_A Non-canonical purine NTP pyrophosphatase; HAM1 protein, hydrolase;
HET: MSE; 1.90A {Coxiella burnetii}
Length = 203
Score = 25.9 bits (58), Expect = 9.2
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 155 GAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFD 198
AM E+ VL S N K+ + + +L + ++ V D
Sbjct: 2 NAMLEI-VLA-SQNS--SKLAEMQELLRDLEIKFIPQTEFSVPD 41
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.416
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,236,633
Number of extensions: 191765
Number of successful extensions: 2500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 800
Number of HSP's successfully gapped: 363
Length of query: 207
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,216,824
Effective search space: 497585232
Effective search space used: 497585232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.8 bits)