RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10233
(207 letters)
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 68.9 bits (167), Expect = 1e-14
Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 6/145 (4%)
Query: 24 VLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLS 83
L L + + L T L L L N IS I L T + ++ ++ N ++ + +S
Sbjct: 245 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 304
Query: 84 HMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHN 143
+++ L + L N I I +S L L+ L ++N+ + D+ L + ++ + HN
Sbjct: 305 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNK---VSDVSSLANLTNINWLSAGHN 361
Query: 144 QIEDEEVIEVFGAMPELRVLTLSHN 168
QI D + + + L L+
Sbjct: 362 QISD---LTPLANLTRITQLGLNDQ 383
Score = 59.6 bits (143), Expect = 2e-11
Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 12/170 (7%)
Query: 23 DVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENL 82
D L L+ I L T L L L NN IS + L T++ + + N + + L
Sbjct: 222 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL 281
Query: 83 SHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSH 142
+ + L + L+ N +E I +S L L L L N + I + L L + ++
Sbjct: 282 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFAN 338
Query: 143 NQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLD 192
N++ D + + + L+ HN + + L
Sbjct: 339 NKVSD---VSSLANLTNINWLSAGHNQISDLTP------LANLTRITQLG 379
Score = 50.0 bits (118), Expect = 5e-08
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 22/142 (15%)
Query: 46 CLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLS 105
L NN IS I L T + + ++ N +K + L+ + L ++L++N I + LS
Sbjct: 201 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 260
Query: 106 CLPVLRTLHLSHNRLKTIEDIEHLK-------------------DCPLLSIVDVSHNQIE 146
L L L L N++ I + L + L+ + + N I
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320
Query: 147 DEEVIEVFGAMPELRVLTLSHN 168
D I ++ +L+ L ++N
Sbjct: 321 D---ISPVSSLTKLQRLFFANN 339
Score = 40.0 bits (92), Expect = 9e-05
Identities = 15/81 (18%), Positives = 35/81 (43%)
Query: 50 ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
++ I++I A E + V + + + + T+ I+ I+ + L
Sbjct: 8 QDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN 67
Query: 110 LRTLHLSHNRLKTIEDIEHLK 130
L ++ S+N+L I +++L
Sbjct: 68 LTQINFSNNQLTDITPLKNLT 88
Score = 38.4 bits (88), Expect = 3e-04
Identities = 16/94 (17%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 92 NLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
L + + + L + TL +K+I+ +E+L + L+ ++ S+NQ+ D I
Sbjct: 28 VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN---LTQINFSNNQLTD---I 81
Query: 152 EVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLC 185
+ +L + +++N +
Sbjct: 82 TPLKNLTKLVDILMNNNQIADITPLANLTNLTGL 115
Score = 38.1 bits (87), Expect = 4e-04
Identities = 12/72 (16%), Positives = 31/72 (43%)
Query: 47 LWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSC 106
L ++ + ++ ++ +K ++ + ++ L IN S+N + I L
Sbjct: 27 TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKN 86
Query: 107 LPVLRTLHLSHN 118
L L + +++N
Sbjct: 87 LTKLVDILMNNN 98
Score = 36.1 bits (82), Expect = 0.002
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 48 WLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCL 107
N ++ ++ L T + + + N V + L+ + L+++ ++N I I L L
Sbjct: 159 LSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL 218
Query: 108 PVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSH 167
L L L+ N+LK I + L + L D+++NQI + + + +L L L
Sbjct: 219 TNLDELSLNGNQLKDIGTLASLTNLTDL---DLANNQISN---LAPLSGLTKLTELKLGA 272
Query: 168 NPCVGKI 174
N
Sbjct: 273 NQISNIS 279
Score = 31.9 bits (71), Expect = 0.048
Identities = 28/108 (25%), Positives = 47/108 (43%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
L G I+ +E L + NN ++ I L T++ I M++N + + L++
Sbjct: 49 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLAN 108
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDC 132
+ L + L +N I I+ L L L L LS N + I + L
Sbjct: 109 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156
Score = 25.7 bits (55), Expect = 4.5
Identities = 8/61 (13%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 108 PVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSH 167
L + + D D ++ + I+ I+ + L + S+
Sbjct: 19 TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSN 75
Query: 168 N 168
N
Sbjct: 76 N 76
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 63.4 bits (153), Expect = 1e-13
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 3/160 (1%)
Query: 49 LENNGISKIENLDAQTEMRSIYMHHNLVKVMENL-SHMQLLDTINLSHNFIEKIENLSCL 107
L I + R + + + V+ENL + + D I+ S N I K++ L
Sbjct: 3 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 62
Query: 108 PVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSH 167
L+TL +++NR+ I + + P L+ + +++N + + ++ ++ L L +
Sbjct: 63 RRLKTLLVNNNRICRIGEGLD-QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 121
Query: 168 NPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEAW 207
NP K+YR I +R LD V K+R+ AE
Sbjct: 122 NPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKM 160
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 59.7 bits (144), Expect = 2e-12
Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 45 KCLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEKIEN 103
+ L L + ++ + +L+ + + + HN L + L+ ++ L+ + S N +E ++
Sbjct: 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60
Query: 104 LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI--EVFGAMPELR 161
++ LP L+ L L +NRL+ I+ L CP L ++++ N + EE I + +P +
Sbjct: 61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120
Query: 162 VL 163
+
Sbjct: 121 SI 122
Score = 57.4 bits (138), Expect = 1e-11
Identities = 23/125 (18%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Query: 67 RSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDI 126
R +++ H + V+ +L + L+ ++LSHN + + L LR L + +E++
Sbjct: 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP--PALAALRCLEVLQASDNALENV 58
Query: 127 EHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCV 186
+ + + P L + + +N+++ I+ + P L +L L N + + +
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEMLP 117
Query: 187 NLRHL 191
++ +
Sbjct: 118 SVSSI 122
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 58.5 bits (140), Expect = 2e-11
Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 16/187 (8%)
Query: 35 IENLEEYTGLKCLWLENNG----ISKIENLDAQ----TEMRSIYMHHNLVKVMENLSHMQ 86
I EE + E I IE +DA + + + N ++ + +LS M+
Sbjct: 11 IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGME 70
Query: 87 LLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE 146
L ++L N I+KIENL + ++ +S+N+I
Sbjct: 71 NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNL--RVLYMSNNKIT 128
Query: 147 DEEVIEVFGAMPELRVLTLSHNPCVGKIK------NYRRMFINLCVNLRHLDDYPVFDKD 200
+ I+ A+ +L L L+ NP K YR + NL+ LD PV +
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDE 188
Query: 201 RKCAEAW 207
R+ A
Sbjct: 189 REQANVA 195
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 55.6 bits (133), Expect = 1e-10
Identities = 26/155 (16%), Positives = 64/155 (41%), Gaps = 7/155 (4%)
Query: 49 LENNGISKIEN-LDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSC- 106
L+ + +++ + + + + ++ +L + +N + + +
Sbjct: 4 LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEEN 63
Query: 107 LPVLRTLHLSHNRLKTIEDIEH-LKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTL 165
+P L +L+LS+NRL ++D+ ++ P L I+++S N+++ E ++ +L L L
Sbjct: 64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD-KIKGLKLEELWL 122
Query: 166 SHNPCVGKIK---NYRRMFINLCVNLRHLDDYPVF 197
N + Y L LD + +
Sbjct: 123 DGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELP 157
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 44.6 bits (104), Expect = 2e-06
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 46 CLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLS 105
L+L+ N I+ I L T ++ + + + V + L+++ L T+ N I I L+
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192
Query: 106 CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSH 142
LP L +HL +N+ I D+ L + L IV +++
Sbjct: 193 SLPNLIEVHLKNNQ---ISDVSPLANTSNLFIVTLTN 226
Score = 39.6 bits (91), Expect = 9e-05
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 46 CLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLS 105
L L + I+ + L + ++ +Y+ N + + L+ + L +++ + + + L+
Sbjct: 111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLA 170
Query: 106 CLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTL 165
L L TL N++ I + L P L V + +NQI D + L ++TL
Sbjct: 171 NLSKLTTLKADDNKISDISPLASL---PNLIEVHLKNNQISD---VSPLANTSNLFIVTL 224
Query: 166 SH 167
++
Sbjct: 225 TN 226
Score = 38.9 bits (89), Expect = 2e-04
Identities = 21/93 (22%), Positives = 42/93 (45%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
LYL T I L T L+ L + N +S + L +++ ++ N + + L+
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS 193
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSH 117
+ L ++L +N I + L+ L + L++
Sbjct: 194 LPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226
Score = 33.5 bits (75), Expect = 0.011
Identities = 14/85 (16%), Positives = 30/85 (35%)
Query: 50 ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
+ I+ I A I + V + + + T++ + IE + L
Sbjct: 5 QPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNN 64
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPL 134
L L L N++ + +++L
Sbjct: 65 LIGLELKDNQITDLAPLKNLTKITE 89
Score = 32.3 bits (72), Expect = 0.027
Identities = 29/196 (14%), Positives = 59/196 (30%), Gaps = 50/196 (25%)
Query: 38 LEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNF 97
+ G+ L G++ IE + + + + N + + L ++ + + LS N
Sbjct: 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP 96
Query: 98 IE-----------------------------------------KIENLSCLPVLRTLHLS 116
++ +I N+S L L L
Sbjct: 97 LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL 156
Query: 117 HNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKN 176
+ D+ L + L+ + N+I D I ++P L + L +N
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISD---ISPLASLPNLIEVHLKNNQISDVS-- 211
Query: 177 YRRMFINLCVNLRHLD 192
+ NL +
Sbjct: 212 ----PLANTSNLFIVT 223
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 41.9 bits (97), Expect = 2e-05
Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 22/161 (13%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
+ + ++ ++ + L+L N ++ I+ L + +++ N VK + +L
Sbjct: 51 IIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKD 110
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLK-------------------TIED 125
++ L +++L HN I I L LP L +L+L +N++ I D
Sbjct: 111 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD 170
Query: 126 IEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLS 166
I L L + +S N I D + + L VL L
Sbjct: 171 IVPLAGLTKLQNLYLSKNHISD---LRALAGLKNLDVLELF 208
Score = 38.8 bits (89), Expect = 2e-04
Identities = 18/81 (22%), Positives = 38/81 (46%)
Query: 54 ISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTL 113
I +I + DA E + V + + +D I +++ I+ ++ + LP + L
Sbjct: 14 IKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKL 73
Query: 114 HLSHNRLKTIEDIEHLKDCPL 134
L+ N+L I+ + +LK+
Sbjct: 74 FLNGNKLTDIKPLANLKNLGW 94
Score = 30.7 bits (68), Expect = 0.080
Identities = 12/72 (16%), Positives = 32/72 (44%)
Query: 47 LWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSC 106
L+ ++ + + I +++ +K ++ + ++ + + L+ N + I+ L+
Sbjct: 29 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLAN 88
Query: 107 LPVLRTLHLSHN 118
L L L L N
Sbjct: 89 LKNLGWLFLDEN 100
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 37.0 bits (84), Expect = 7e-04
Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 22/158 (13%)
Query: 25 LYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
L G I+ +E L + NN ++ I L T++ I M++N + + L++
Sbjct: 45 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLAN 104
Query: 85 MQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKT-------------------IED 125
+ L + L +N I I+ L L L L LS N + + D
Sbjct: 105 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD 164
Query: 126 IEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVL 163
++ L + L +D+S N++ D I V + L L
Sbjct: 165 LKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESL 199
Score = 32.7 bits (73), Expect = 0.017
Identities = 15/83 (18%), Positives = 35/83 (42%)
Query: 50 ENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPV 109
++ I++I A E + V + + + + T+ I+ I+ + L
Sbjct: 4 QDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN 63
Query: 110 LRTLHLSHNRLKTIEDIEHLKDC 132
L ++ S+N+L I +++L
Sbjct: 64 LTQINFSNNQLTDITPLKNLTKL 86
Score = 31.9 bits (71), Expect = 0.037
Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 91 INLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEV 150
L + + + L + TL +K+I+ +E+L + L+ ++ S+NQ+ D
Sbjct: 23 TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN---LTQINFSNNQLTDITP 79
Query: 151 IE 152
++
Sbjct: 80 LK 81
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 35.8 bits (81), Expect = 0.002
Identities = 17/119 (14%), Positives = 44/119 (36%), Gaps = 10/119 (8%)
Query: 42 TGLKCLWLENNGISK-----IENLDAQTEMRSIYMHHNLVKVMENLSHMQLLDTINLSHN 96
L L L+ N I+K ++ L+ ++ + + V + L + ++
Sbjct: 171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 230
Query: 97 FIEKIENLSCLPVLRTLHLSHNRLKTIED-----IEHLKDCPLLSIVDVSHNQIEDEEV 150
++ L+ ++ ++L +N + I + S V + N ++ E+
Sbjct: 231 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 289
Score = 31.9 bits (71), Expect = 0.046
Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 8/164 (4%)
Query: 13 NKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMH 72
N L + + L + + + I+ I + +++
Sbjct: 121 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLD 179
Query: 73 HNLVKVMENLSHMQL--LDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLK 130
N + ++ S L L + LS N I ++N S L N K ++ L
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239
Query: 131 DCPLLSIVDVSHNQIE-----DEEVIEVFGAMPELRVLTLSHNP 169
D + +V + +N I D ++L NP
Sbjct: 240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283
Score = 29.2 bits (64), Expect = 0.34
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 64 TEMRSIYMHHNLVKVMEN--LSHMQLLDTINLSHNFIEKIEN--LSCLPVLRTLHLSHNR 119
+ + + +N + +++ +++ L T+ L +N I KI + L L L+LS N+
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 120 LKTIEDIEHLKDCPL 134
LK + + L
Sbjct: 91 LKELPEKMPKTLQEL 105
Score = 26.5 bits (57), Expect = 2.3
Identities = 28/121 (23%), Positives = 41/121 (33%), Gaps = 3/121 (2%)
Query: 70 YMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHL 129
+ M+ L I ++ I I P L LHL N++ T D L
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKI-TKVDAASL 191
Query: 130 KDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLR 189
K L+ + +S N I + P LR L L++N V V L
Sbjct: 192 KGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 250
Query: 190 H 190
+
Sbjct: 251 N 251
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 35.6 bits (80), Expect = 0.003
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 65 EMRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIE 124
E+ ++ + + + + L+ + E P L L++S+N+L +
Sbjct: 241 ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP 300
Query: 125 DIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
P L + S N + EV L+ L + +NP
Sbjct: 301 A-----LPPRLERLIASFNHLA-----EVPELPQNLKQLHVEYNP 335
Score = 32.9 bits (73), Expect = 0.024
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 46 CLWLENNGISKIENLDAQTEMRSIYMHHN-LVKVMENLSHMQLLDTINLSHNFIEKIENL 104
+L + D + + + +N L+++ ++ L S N + ++ L
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLI---ASFNHLAEVPEL 322
Query: 105 SCLPVLRTLHLSHNRLKTIEDI 126
L+ LH+ +N L+ DI
Sbjct: 323 --PQNLKQLHVEYNPLREFPDI 342
Score = 27.9 bits (60), Expect = 0.88
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 88 LDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDI 126
+ L++ + + L P L +L S N L + ++
Sbjct: 40 AHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL 76
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 33.5 bits (75), Expect = 0.011
Identities = 17/121 (14%), Positives = 44/121 (36%), Gaps = 4/121 (3%)
Query: 88 LDTINLSHNFIEK-IENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIE 146
+ +F+++ + ++ + LS++ ++ L C L + + ++
Sbjct: 25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS 84
Query: 147 DEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEA 206
D ++ L L+ + C G + + ++ C L L+ FD K +
Sbjct: 85 D-PIVNTLAKNSNLV--RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141
Query: 207 W 207
Sbjct: 142 A 142
Score = 32.0 bits (71), Expect = 0.037
Identities = 18/128 (14%), Positives = 38/128 (29%)
Query: 66 MRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIED 125
+ V + L + + + P L L LS + + +
Sbjct: 133 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 192
Query: 126 IEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLC 185
+ L + +S E + G +P L+ L + G ++ + +L
Sbjct: 193 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252
Query: 186 VNLRHLDD 193
+N H
Sbjct: 253 INCSHFTT 260
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 33.4 bits (74), Expect = 0.014
Identities = 11/87 (12%), Positives = 23/87 (26%), Gaps = 4/87 (4%)
Query: 110 LRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI---EVFGAMPELRVLTLS 166
+++L + L E L +V + + + P L L L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 167 HNPCVGK-IKNYRRMFINLCVNLRHLD 192
N + + ++ L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLS 90
Score = 32.6 bits (72), Expect = 0.025
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 103 NLSCLPVLRTLHLSHNRLKTIEDI---EHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPE 159
VLR L L+ + L L +D+S+N + D ++++ ++ +
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423
Query: 160 ----LRVLTLSHNPCVGKIKNYRRMFINLCVNLRHL 191
L L L ++++ + +LR +
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
Score = 31.9 bits (70), Expect = 0.052
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 15/100 (15%)
Query: 79 MENLSHMQLLDTINLSHNFIEKI------ENLSCLPVLRTLHLSHNRLKTIEDIEHL--- 129
+L + L+ + L LR L LS+N L I L
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL-GDAGILQLVES 420
Query: 130 --KDCPLLSIVDVSHNQIEDE---EVIEVFGAMPELRVLT 164
+ LL + + +E + + P LRV++
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460
Score = 25.7 bits (54), Expect = 5.0
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 65 EMRSIYMHHNLV---KVMENLSHMQLLDTINLSHNFIEKI------ENLSCLPVLRTLHL 115
+++S+ + + + E L +Q + L + + L P L L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 116 SHNRL 120
N L
Sbjct: 63 RSNEL 67
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 32.0 bits (71), Expect = 0.043
Identities = 14/81 (17%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 66 MRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTI 123
+ ++L + + + L+ ++L +N I + L+ L L +L++S N L
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC-- 281
Query: 124 EDIEHLKDCPLLSIVDVSHNQ 144
+I + + ++N+
Sbjct: 282 GEIPQGGNLQRFDVSAYANNK 302
Score = 27.4 bits (59), Expect = 1.2
Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 5/143 (3%)
Query: 36 ENLEEYTGLKCLWLENNGISKIENLDAQTEMRSIYMHH----NLVKVMENLSHMQLLDTI 91
++ L + + N IS + + L + L +
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV 202
Query: 92 NLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQIEDEEVI 151
+LS N +E ++ T + + D+ + L+ +D+ +N+I +
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT-LP 261
Query: 152 EVFGAMPELRVLTLSHNPCVGKI 174
+ + L L +S N G+I
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEI 284
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 27.6 bits (59), Expect = 1.1
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 4/64 (6%)
Query: 66 MRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTI 123
+ ++ + +++S I + L L LR LK +
Sbjct: 181 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL 238
Query: 124 EDIE 127
+E
Sbjct: 239 PTLE 242
Score = 26.0 bits (55), Expect = 3.0
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 104 LSCLPVLRTLHLSHNRLKTIEDIEHLKDCPLLSIVDVSHNQ 144
L +S R+ ++ L++ L + +
Sbjct: 197 FHGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNLK 236
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 27.4 bits (59), Expect = 1.4
Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 2/78 (2%)
Query: 66 MRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIED 125
L + + ++ ++ L+ L L TL L N L TI
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP- 188
Query: 126 IEHLKDCPLLSIVDVSHN 143
+ LL + N
Sbjct: 189 -KGFFGSHLLPFAFLHGN 205
Score = 27.0 bits (58), Expect = 1.4
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 80 ENLSHMQLLDTINLSHNFIEKI-ENLSCLPVLRTLHLSHNRLKTIEDIEHLKD 131
L+ ++ LDT+ L N + I + +L L N +I + +
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRR 218
Score = 27.0 bits (58), Expect = 1.6
Identities = 18/138 (13%), Positives = 36/138 (26%), Gaps = 4/138 (2%)
Query: 72 HHNLVKVMENLSHMQLLDTINLSHNFIEKI--ENLSCLPVLRTLHLSHNRLKTIEDIEHL 129
NL + +L + ++LS N + L L L+L L ++ L
Sbjct: 19 KRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL 76
Query: 130 KDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNPCVGKIKNYRRMFINLCVNLR 189
L + + + ++ L+ P + L N
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 190 HLDDYPVFDKDRKCAEAW 207
+ K +
Sbjct: 137 KTLPPGLLTPTPKLEKLS 154
Score = 25.8 bits (55), Expect = 4.0
Identities = 15/105 (14%), Positives = 29/105 (27%), Gaps = 3/105 (2%)
Query: 66 MRSIYMHHNLVKVMENLSHMQLLDTINLSHNFIEKI-ENLSCLPVLRTLHLSHNRLKTIE 124
+ + + + L + L + L N ++ + L N T
Sbjct: 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Query: 125 DIEHLKDCPLLSIVDVSHNQIEDEEVIEVFGAMPELRVLTLSHNP 169
L L + + N + + + F L L NP
Sbjct: 164 PAGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNP 206
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 27.2 bits (58), Expect = 1.7
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 9/109 (8%)
Query: 70 YMHHNLVKVMENLSHMQLLDTINLSHNFIEKIENLSCLPVLRTLHLSHNRLKTIEDIEHL 129
++ + + L + L D L P LR L L+ L +
Sbjct: 205 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 264
Query: 130 KDCPL-----LSIVDVSHNQIEDEEVIE----VFGAMPELRVLTLSHNP 169
L + + +N+IE + V + MP+L L L+ N
Sbjct: 265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313
Score = 26.0 bits (55), Expect = 3.5
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 6/76 (7%)
Query: 74 NLVKVMENLSHMQLLDTINLSHNFIEKI------ENLSCLPVLRTLHLSHNRLKTIEDIE 127
+ V L + I LS N I EN++ L S ++D
Sbjct: 19 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEI 78
Query: 128 HLKDCPLLSIVDVSHN 143
LL +
Sbjct: 79 PEALRLLLQALLKCPK 94
>d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia coli
[TaxId: 562]}
Length = 56
Score = 24.6 bits (54), Expect = 2.3
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 94 SHNFIEKIENLSCLPVLRTLHLSH 117
SH+ + + +LS HL H
Sbjct: 17 SHDALTAVTSLSVDKTSGEKHLRH 40
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 24.2 bits (52), Expect = 4.5
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 162 VLTLSHNPCVGKIKNYRRMFINLCVNLRHLDDYPVFDKDRKCAEAW 207
+L +S +I+ + R+ D K ++ EA+
Sbjct: 8 ILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAY 53
>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa
subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 217
Score = 24.9 bits (54), Expect = 7.8
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 2 TKASLRKICKDNKLYLTPSLNDVLYLHFKGYTVIENLEEYTGLK 45
+ N+LYLT L ++ +F + + ++ LK
Sbjct: 122 YNKLFSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLK 165
>d2fsqa1 d.61.1.4 (A:6-237) Putative phosphoesterase Atu0111
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 232
Score = 24.4 bits (53), Expect = 9.6
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 13/70 (18%)
Query: 26 YLHFKGYTVIENLEEYTGL-KCLWLENNGISKIENLDAQTEMRSIYMHHNLVKVMENLSH 84
+L G TV+ +L E + + + + + L + H
Sbjct: 30 FLPEPGNTVVCHLVEGSQTESAI------------VSTRQRFLDMPEASQLAFTPVSSLH 77
Query: 85 MQLLDTINLS 94
M + + S
Sbjct: 78 MTVFQGVIES 87
>d1sv0a_ a.60.1.1 (A:) Ets DNA-binding protein pokkuri (Yan)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 77
Score = 23.2 bits (50), Expect = 9.8
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 1 MTKASLRKICKDNKLYLTPSLNDVLYLHF 29
M L + + + + P DVL+
Sbjct: 40 MNGKRLCLLTRADFGHRCPGAGDVLHNVL 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.416
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 802,437
Number of extensions: 37841
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 81
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)