BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10234
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|C Chain C, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|D Chain D, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|B Chain B, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
Length = 462
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 10 MNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDII 69
M + W G F E + +F S+ DR L++ED+ + H MLH+ GL+ EE + I
Sbjct: 1 MAHRTWGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAI 60
Query: 70 IKTLNEIEVDIRENRIELKTELEDIHMNIESEL 102
+K L+ IE +I + ELED+HMN+E+ L
Sbjct: 61 LKGLDRIEEEIEAGTFPWREELEDVHMNLEARL 93
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
pdb|1TJ7|B Chain B, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
Length = 457
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 12 MKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIK 71
M LW G F + ++ +QF +S+ D RL ++DI GS+A L + G++ EE+ + +
Sbjct: 1 MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEE 60
Query: 72 TLNEIEVDIRENRIE-LKTELEDIHMNIESELIKRI 106
LN + D+R + L+++ EDIH +E +LI ++
Sbjct: 61 ALNVLLEDVRARPQQILESDAEDIHSWVEGKLIDKV 96
>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase
pdb|1AOS|B Chain B, Human Argininosuccinate Lyase
Length = 464
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 11 NMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIII 70
+ KLW G F ++ +E+F SI DR L++ D++GS A+ L GL+ E D I+
Sbjct: 5 SQKLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQIL 64
Query: 71 KTLNEIEVDIRENRIELKTELEDIHMNIESEL 102
L+++ + + +L + EDIH E L
Sbjct: 65 HGLDKVAEEWAQGTFKLNSNDEDIHTANERRL 96
>pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
pdb|1K62|B Chain B, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
Length = 464
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 13 KLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKT 72
KLW G F ++ +E+F SI DR L++ D++GS A+ L GL+ E D I+
Sbjct: 7 KLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQILHG 66
Query: 73 LNEIEVDIRENRIELKTELEDIHMNIESEL 102
L+++ + + +L + EDIH E L
Sbjct: 67 LDKVAEEWAQGTFKLNSNDEDIHTANERRL 96
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 5 IATETMNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGE 64
+A+E KLW G F + + +E+ SI D+RL + DI+GS+A+ L G++
Sbjct: 1 MASEARGDKLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKT 60
Query: 65 EKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESEL 102
E + I+ L +I + + +K EDIH E L
Sbjct: 61 ELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRL 98
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJW|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
Length = 474
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 5 IATETMNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGE 64
+A+E KLW G F + + +E+ SI D+RL + DI+GS+A+ L G++
Sbjct: 1 MASEARGDKLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKT 60
Query: 65 EKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESEL 102
E + I+ L +I + + +K EDIH E L
Sbjct: 61 ELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRL 98
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|B Chain B, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|C Chain C, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|D Chain D, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
Length = 474
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 5 IATETMNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGE 64
+A+E KLW G F + + +E+ SI D+RL + DI+GS+A+ L G++
Sbjct: 1 MASEARGDKLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKT 60
Query: 65 EKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESEL 102
E + I+ L +I + + +K EDIH E L
Sbjct: 61 ELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRL 98
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 5 IATETMNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGE 64
+A+E KLW G F + + +E+ SI D+RL + DI+GS+A+ L G++
Sbjct: 1 MASEARGDKLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKT 60
Query: 65 EKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESEL 102
E + I+ L +I + + +K EDIH E L
Sbjct: 61 ELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRL 98
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%)
Query: 5 IATETMNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGE 64
+A+E KLW G F + + +E+ SI D+RL + DI+GS+A+ L G++
Sbjct: 1 MASEARGDKLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKT 60
Query: 65 EKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESEL 102
E + I+ L +I + + +K EDI+ E L
Sbjct: 61 ELEKILSGLEKISEEWSKGVFVVKQSDEDINTANERRL 98
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double
Loop Mutant (Dlm)
pdb|1U15|B Chain B, Crystal Structure Of A Duck-Delta-Crystallin-1 Double
Loop Mutant (Dlm)
pdb|1U15|C Chain C, Crystal Structure Of A Duck-Delta-Crystallin-1 Double
Loop Mutant (Dlm)
pdb|1U15|D Chain D, Crystal Structure Of A Duck-Delta-Crystallin-1 Double
Loop Mutant (Dlm)
pdb|1U16|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double
Loop Mutant (Dlm) In Complex With Sulfate
Length = 472
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 13 KLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKT 72
KL G F + + +E+ SI D+RL + DI+ SIA+ L G++ E + I+
Sbjct: 7 KLMGGRFVGSTDPIMEKLNSSIAYDQRLSEVDIQASIAYAKALEKAGILTKTELEKILSG 66
Query: 73 LNEIEVDIRENRIELKTELEDIH 95
L +I + + +K EDIH
Sbjct: 67 LEKISEEWSKGVFVVKQSDEDIH 89
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 447
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 24 NKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIREN 83
+ +E+ SI D+RL + DI+GS+A+ L G++ E + I+ L +I + +
Sbjct: 2 DPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKG 61
Query: 84 RIELKTELEDIH 95
+K EDIH
Sbjct: 62 VFVVKQSDEDIH 73
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 13 KLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKT 72
KL G F + + ++ + SI+ ++RL + DI+ SIA+ L G++ E + I+
Sbjct: 7 KLMGGRFVGSTDPIMQMLSTSISTEQRLSEVDIQASIAYAKALEKAGILTKTELEKILSG 66
Query: 73 LNEIEVDIRENRIELKTELEDIH 95
L +I ++ + I + EDI
Sbjct: 67 LEKISEELSKGVIVVTQSDEDIQ 89
>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|B Chain B, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|C Chain C, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|D Chain D, Crystal Structrue Of Goose Delta Crystallin
Length = 465
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 13 KLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKT 72
KL G F + + ++ + S++ ++RL + DI+ SIA+ L G++ E + I+
Sbjct: 6 KLMGGRFVGSTDPIMQMLSTSMSTEQRLSEVDIQASIAYAKALEKAGILTKTELEKILSG 65
Query: 73 LNEIEVDIRENRIELKTELEDIH 95
L +I + + + EDIH
Sbjct: 66 LEKISEEWSKGVFVVTQSDEDIH 88
>pdb|3HJE|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hypothetical
Maltooligosyl Trehalose Synthase
Length = 704
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 58 CGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDI 94
CG ++G++ +I+KTLN R+ IE+ E D+
Sbjct: 653 CGFMRGDKVLVIVKTLN------RDYDIEIDGEYTDV 683
>pdb|3U44|B Chain B, Crystal Structure Of Addab-Dna Complex
pdb|3U4Q|B Chain B, Structure Of Addab-Dna Complex At 2.8 Angstroms
Length = 1166
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 13 KLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSC 58
KL+ F N K +E+ +V R+LY E I+GS++ + ++C
Sbjct: 761 KLFSSLFFRNEVKQLER-----SVSRQLYGERIQGSVSRMETFNAC 801
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,189,800
Number of Sequences: 62578
Number of extensions: 153959
Number of successful extensions: 511
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 37
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)