Query psy10234
Match_columns 167
No_of_seqs 136 out of 1127
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 21:19:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0165 ArgH Argininosuccinate 100.0 2.8E-40 6.1E-45 296.7 13.5 143 10-152 1-153 (459)
2 KOG1316|consensus 100.0 8.9E-36 1.9E-40 259.8 11.8 137 12-148 6-152 (464)
3 PRK06389 argininosuccinate lya 100.0 1.6E-35 3.4E-40 265.7 13.8 136 12-151 1-145 (434)
4 PLN02646 argininosuccinate lya 100.0 6.3E-32 1.4E-36 244.6 14.0 140 12-151 16-165 (474)
5 TIGR00838 argH argininosuccina 99.9 2E-27 4.3E-32 213.8 13.3 138 14-151 1-149 (455)
6 PRK00855 argininosuccinate lya 99.9 4.8E-27 1E-31 211.6 12.1 141 11-151 3-153 (459)
7 PRK04833 argininosuccinate lya 99.9 1E-25 2.2E-30 203.1 13.6 139 13-151 2-151 (455)
8 PRK12308 bifunctional arginino 99.9 3.7E-25 8.1E-30 205.2 13.8 140 12-151 1-151 (614)
9 PRK06705 argininosuccinate lya 99.9 5.9E-25 1.3E-29 200.4 12.9 139 12-152 9-159 (502)
10 PRK02186 argininosuccinate lya 99.8 1.4E-19 3E-24 174.0 11.9 135 17-152 411-559 (887)
11 cd01359 Argininosuccinate_lyas 99.8 4E-19 8.6E-24 159.0 12.0 120 33-152 1-130 (435)
12 PRK14515 aspartate ammonia-lya 99.8 1.3E-18 2.8E-23 158.4 10.9 135 13-151 27-189 (479)
13 PRK00485 fumC fumarate hydrata 99.8 2.5E-18 5.4E-23 155.6 9.4 137 11-151 18-183 (464)
14 PF00206 Lyase_1: Lyase; Inte 99.8 5.4E-18 1.2E-22 145.7 10.4 135 17-151 1-154 (312)
15 cd01334 Lyase_I Lyase class I 99.7 2.5E-17 5.4E-22 142.2 10.1 111 41-151 1-122 (325)
16 PRK12425 fumarate hydratase; P 99.7 1.6E-16 3.5E-21 144.1 11.4 126 26-151 27-181 (464)
17 cd01596 Aspartase_like asparta 99.7 1.3E-16 2.8E-21 144.2 9.5 137 11-151 14-178 (450)
18 PRK12273 aspA aspartate ammoni 99.7 2.5E-16 5.3E-21 143.0 10.5 126 26-151 30-185 (472)
19 cd01357 Aspartase Aspartase. T 99.7 4.3E-16 9.4E-21 140.7 10.0 126 26-151 25-178 (450)
20 cd01595 Adenylsuccinate_lyase_ 99.6 3.3E-16 7.2E-21 138.2 8.0 114 37-152 7-132 (381)
21 PLN00134 fumarate hydratase; P 99.6 1.3E-15 2.8E-20 138.0 11.1 128 24-151 17-175 (458)
22 cd01362 Fumarase_classII Class 99.6 2.5E-15 5.4E-20 136.0 9.0 137 11-151 14-179 (455)
23 cd01360 Adenylsuccinate_lyase_ 99.6 6.1E-15 1.3E-19 130.7 9.6 111 37-151 13-133 (387)
24 PRK13353 aspartate ammonia-lya 99.6 2.1E-14 4.4E-19 130.6 10.5 126 26-151 30-183 (473)
25 TIGR02426 protocat_pcaB 3-carb 99.5 8.3E-15 1.8E-19 127.9 6.8 117 34-151 14-141 (338)
26 PRK06390 adenylosuccinate lyas 99.5 1.1E-14 2.4E-19 131.4 7.5 113 37-151 21-144 (451)
27 PRK08540 adenylosuccinate lyas 99.5 2.5E-14 5.3E-19 128.9 7.0 112 37-151 21-145 (449)
28 cd01597 pCLME prokaryotic 3-ca 99.5 1.8E-14 3.8E-19 129.3 6.0 113 37-151 17-141 (437)
29 TIGR00839 aspA aspartate ammon 99.5 9.4E-14 2E-18 126.3 9.4 128 24-151 23-181 (468)
30 TIGR00928 purB adenylosuccinat 99.5 2.7E-13 5.8E-18 121.7 10.3 107 37-151 16-139 (435)
31 TIGR00979 fumC_II fumarate hyd 99.4 4.9E-13 1.1E-17 121.3 9.0 135 13-151 17-180 (458)
32 PRK08470 adenylosuccinate lyas 99.4 1.8E-12 3.9E-17 117.0 8.3 110 37-151 16-136 (442)
33 PRK09285 adenylosuccinate lyas 99.3 1.8E-11 3.9E-16 111.1 8.5 130 13-151 10-166 (456)
34 PRK05975 3-carboxy-cis,cis-muc 99.2 6.9E-11 1.5E-15 104.0 7.5 113 37-151 26-150 (351)
35 PRK07492 adenylosuccinate lyas 98.8 3.1E-08 6.7E-13 89.5 10.9 106 38-151 17-139 (435)
36 PRK07380 adenylosuccinate lyas 98.8 4.9E-08 1.1E-12 88.2 10.7 107 37-151 16-136 (431)
37 cd01598 PurB PurB_like adenylo 98.6 1.1E-07 2.5E-12 85.8 6.6 111 37-151 7-144 (425)
38 cd03302 Adenylsuccinate_lyase_ 98.5 8.3E-07 1.8E-11 80.2 10.4 105 39-151 18-138 (436)
39 PRK09053 3-carboxy-cis,cis-muc 98.3 6E-06 1.3E-10 74.9 11.1 111 37-151 23-150 (452)
40 PLN02848 adenylosuccinate lyas 98.3 2.7E-06 5.9E-11 77.6 8.8 111 37-151 32-169 (458)
41 cd01594 Lyase_I_like Lyase cla 97.3 0.00057 1.2E-08 55.3 6.1 54 98-151 16-85 (231)
42 COG0015 PurB Adenylosuccinate 96.6 0.026 5.7E-07 51.7 10.9 107 37-151 16-140 (438)
43 PF10925 DUF2680: Protein of u 80.4 13 0.00028 25.0 6.7 43 40-82 12-54 (59)
44 PF09851 SHOCT: Short C-termin 72.7 9.4 0.0002 22.2 3.9 26 48-73 4-29 (31)
45 COG0114 FumC Fumarase [Energy 65.3 76 0.0016 29.5 9.9 132 12-147 18-178 (462)
46 PF09920 DUF2150: Uncharacteri 59.6 59 0.0013 26.9 7.5 61 41-107 39-99 (190)
47 PF07408 DUF1507: Protein of u 58.5 32 0.00069 25.2 5.1 35 36-75 44-78 (90)
48 PF01756 ACOX: Acyl-CoA oxidas 49.6 66 0.0014 25.4 6.2 57 49-105 94-165 (187)
49 PRK13666 hypothetical protein; 40.3 60 0.0013 23.9 4.2 37 36-77 46-82 (92)
50 PF07798 DUF1640: Protein of u 34.9 2.3E+02 0.0049 22.4 8.0 58 49-107 5-65 (177)
51 PF14164 YqzH: YqzH-like prote 32.4 1.2E+02 0.0027 20.8 4.5 38 57-103 22-59 (64)
52 COG2306 Predicted RNA-binding 32.0 1E+02 0.0022 25.4 4.7 36 52-87 128-163 (183)
53 CHL00149 odpA pyruvate dehydro 31.0 78 0.0017 27.9 4.3 46 51-96 290-336 (341)
54 PF09925 DUF2157: Predicted me 29.7 54 0.0012 25.0 2.7 21 54-74 3-23 (145)
55 TIGR03182 PDH_E1_alph_y pyruva 29.7 72 0.0016 27.6 3.8 48 49-96 263-311 (315)
56 PRK01026 tetrahydromethanopter 29.3 1.3E+02 0.0028 21.4 4.4 22 58-79 9-30 (77)
57 COG1027 AspA Aspartate ammonia 28.0 5.1E+02 0.011 24.3 9.3 85 27-111 30-126 (471)
58 PF10415 FumaraseC_C: Fumarase 27.6 1.7E+02 0.0036 19.1 4.4 32 40-71 17-48 (55)
59 PRK10413 hydrogenase 2 accesso 24.0 1E+02 0.0022 22.0 3.1 22 58-79 57-78 (82)
60 PLN02269 Pyruvate dehydrogenas 23.4 1.2E+02 0.0027 27.0 4.2 45 52-96 293-338 (362)
61 PF04210 MtrG: Tetrahydrometha 23.1 2E+02 0.0044 20.1 4.3 20 60-79 8-27 (70)
62 TIGR03181 PDH_E1_alph_x pyruva 23.0 1.1E+02 0.0024 26.8 3.8 55 50-104 277-336 (341)
63 TIGR03282 methan_mark_13 putat 22.9 4E+02 0.0086 24.2 7.2 62 45-107 120-186 (352)
64 cd08785 CARD_CARD9-like Caspas 22.9 1.7E+02 0.0037 20.9 4.1 30 41-71 12-41 (86)
65 COG1071 AcoA Pyruvate/2-oxoglu 22.5 1.2E+02 0.0025 27.4 3.8 27 53-79 295-321 (358)
66 COG0298 HypC Hydrogenase matur 22.4 1.2E+02 0.0026 21.8 3.2 22 59-80 54-75 (82)
67 PF03683 UPF0175: Uncharacteri 22.4 2.6E+02 0.0057 19.1 4.9 49 48-99 22-74 (76)
68 KOG3520|consensus 22.3 3.5E+02 0.0077 28.3 7.5 41 38-78 392-443 (1167)
69 TIGR01149 mtrG N5-methyltetrah 22.2 2.2E+02 0.0048 19.9 4.4 20 60-79 8-27 (70)
70 TIGR00074 hypC_hupF hydrogenas 22.0 1.4E+02 0.003 21.0 3.4 22 58-79 50-71 (76)
71 KOG2685|consensus 21.7 3.7E+02 0.0081 24.9 6.9 23 139-161 321-343 (421)
72 PF10335 DUF294_C: Putative nu 21.5 1.7E+02 0.0037 22.3 4.1 32 47-78 63-94 (145)
73 PF07812 TfuA: TfuA-like prote 20.8 1.6E+02 0.0035 22.6 3.8 28 49-76 87-114 (120)
74 PLN02374 pyruvate dehydrogenas 20.8 1.2E+02 0.0025 28.0 3.5 27 51-77 356-382 (433)
75 PF11848 DUF3368: Domain of un 20.4 1.6E+02 0.0035 18.4 3.2 26 46-73 3-28 (48)
No 1
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-40 Score=296.73 Aligned_cols=143 Identities=34% Similarity=0.469 Sum_probs=136.8
Q ss_pred hhhhhhcccCCcchhHHHHHHhhCHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCC
Q psy10234 10 MNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKT 89 (167)
Q Consensus 10 ~~~kLW~gR~~~~~~~~~~~f~~s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~ 89 (167)
|++++|+|||.+++++.+..|+.|+.||++|++|||.+|+||++||.++|||+++++++|+.+|.+|.+++.+|+|.+++
T Consensus 1 ~~~~lwggRf~~~~~~~~~~~~~Si~~D~~l~~~di~~s~AH~~mL~~~Gii~~ee~~~I~~~L~~l~~e~~~g~~~~~~ 80 (459)
T COG0165 1 MSNKLWGGRFSGGPDPLVKEFNASISFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKILEGLEELLEEIRAGKFELDP 80 (459)
T ss_pred CCCCCCCCCccCCCcHHHHHHhccchhHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCCccCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhhchhhhhhhhhhhhh-------hHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhh
Q psy10234 90 ELEDIHMNIESELIKRIEFQYYFLLLQYSEL-------SIELKTELEDIHM---NIESELIKRIESRVMSRMR 152 (167)
Q Consensus 90 ~~EDiH~~iE~~L~e~iG~~gg~lHtGRSR~-------rl~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~~ 152 (167)
++||||++||++|++++|++||||||||||| |||+|+++.+|.. .|+.+|++.||+|.+|-|-
T Consensus 81 ~~EDvH~aiE~~L~~~iG~~ggkLhtgRSRNDQVatd~rL~lr~~~~~l~~~i~~l~~aL~~~Ae~~~~~imP 153 (459)
T COG0165 81 DDEDVHTAIEARLIERIGDVGGKLHTGRSRNDQVATDLRLWLRDKLLELLELIRILQKALLDLAEEHAETVMP 153 (459)
T ss_pred ccccHHHHHHHHHHHHHhhhhchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccC
Confidence 9999999999999999999999999999997 5799999977776 8899999999999999873
No 2
>KOG1316|consensus
Probab=100.00 E-value=8.9e-36 Score=259.81 Aligned_cols=137 Identities=30% Similarity=0.427 Sum_probs=128.9
Q ss_pred hhhhcccCCcchhHHHHHHhhCHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCCCC
Q psy10234 12 MKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTEL 91 (167)
Q Consensus 12 ~kLW~gR~~~~~~~~~~~f~~s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~~~ 91 (167)
.|||||||.++++|.+++|+.|+.||++||+.||.||+||+.+|.++|+|+.+|..+|+++|++|..++.+|+|.+.|+.
T Consensus 6 ~KlWGGRFtg~~dp~m~~fn~Si~ydk~ly~~Dv~gSkaya~~L~~~glit~~e~dkil~gLe~i~~ew~~~kf~~~p~d 85 (464)
T KOG1316|consen 6 QKLWGGRFTGAVDPLMEKFNASIPYDKRLYEADVDGSKAYAKALEKAGLITEAELDKILKGLEKIRREWAAGKFKLNPND 85 (464)
T ss_pred hhhhccccCCCCCHHHHHhhccCccchHHHHhhhhhhHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCceEeCCCc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhhchhhhhhhhhhhhh-------hHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy10234 92 EDIHMNIESELIKRIEFQYYFLLLQYSEL-------SIELKTELEDIHM---NIESELIKRIESRVM 148 (167)
Q Consensus 92 EDiH~~iE~~L~e~iG~~gg~lHtGRSR~-------rl~lRd~l~~i~~---~l~~~l~~~~e~~~~ 148 (167)
||||++.|+.|+|.+|+.||++||||||| |||+|+.+..+.. .|.+.+++.||.+.+
T Consensus 86 EDvHtanErrL~eliG~~agKlHTgRSRNDQV~TDlRLw~r~~i~~~~~~l~~L~~~~v~rAe~~~d 152 (464)
T KOG1316|consen 86 EDVHTANERRLTELIGEIAGKLHTGRSRNDQVVTDLRLWLRDAIDTILGLLWNLIRVLVDRAEAELD 152 (464)
T ss_pred hhhhhHHHHHHHHHHhhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999996 6899999999987 556666667766655
No 3
>PRK06389 argininosuccinate lyase; Provisional
Probab=100.00 E-value=1.6e-35 Score=265.70 Aligned_cols=136 Identities=24% Similarity=0.328 Sum_probs=124.3
Q ss_pred hhhhcccCCcchh-HHHHHH-hhCHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCC
Q psy10234 12 MKLWKGCFKENLN-KFVEQF-TESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKT 89 (167)
Q Consensus 12 ~kLW~gR~~~~~~-~~~~~f-~~s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~ 89 (167)
||+|+|||+++++ +.++.| +.|+.||++|++|||.+|+||++||.++||||++++++|+++|.++.+ |.|.++|
T Consensus 1 ~klw~gr~~~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~gii~~~e~~~i~~~L~~i~~----~~~~~~~ 76 (434)
T PRK06389 1 MKIWSGGAGEELENDFYDNIVKDDIDADKNLIKYEIINLLAYHVALAQRRLITEKAPKCVINALIDIYK----NGIEIDL 76 (434)
T ss_pred CCCcccccCCCCchHHHHHHHCCCHHHHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHc----CCCcCCC
Confidence 5799999999999 679999 899999999999999999999999999999999999999999999965 7899999
Q ss_pred CCchhHHHHHHHHHHhhchhhhhhhhhhhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10234 90 ELEDIHMNIESELIKRIEFQYYFLLLQYSELS-------IELKTELEDIHMNIESELIKRIESRVMSRM 151 (167)
Q Consensus 90 ~~EDiH~~iE~~L~e~iG~~gg~lHtGRSR~r-------l~lRd~l~~i~~~l~~~l~~~~e~~~~~~~ 151 (167)
++||+|++||++|++++|++|||+|||||||| ||+|+++.++...+.+..-.+++.|++|-|
T Consensus 77 ~~EDvh~~iE~~L~~~~G~~gg~lhtgRSRNDqvat~~RL~~r~~~~~~~~~l~~l~~~l~~~~~dtim 145 (434)
T PRK06389 77 DLEDVHTAIENFVIRRCGDMFKNFRLFLSRNEQVHADLNLFIIDKIIEIEKILYEIIKVIPGFNLKGRL 145 (434)
T ss_pred CCCchHHHHHHHHHHHhchhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcee
Confidence 99999999999999999999999999999975 599999999999665555555566777766
No 4
>PLN02646 argininosuccinate lyase
Probab=99.97 E-value=6.3e-32 Score=244.63 Aligned_cols=140 Identities=36% Similarity=0.531 Sum_probs=132.8
Q ss_pred hhhhcccCCcchhHHHHHHhhCHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCCCC
Q psy10234 12 MKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTEL 91 (167)
Q Consensus 12 ~kLW~gR~~~~~~~~~~~f~~s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~~~ 91 (167)
+++|+|||++++++.+.+|+.|+.||++|++|||.+|+||++||.++||||++++++|+++|++|..+...|.|.++++.
T Consensus 16 ~~~w~~r~~~~~~~~~~~~~~s~~~d~~l~~~di~~~~Aha~~L~~~Gii~~~~a~~I~~al~~i~~~~~~~~f~~~~~~ 95 (474)
T PLN02646 16 KKLWGGRFEEGVTPAVEKFNESISFDKRLYKEDIMGSKAHASMLAKQGIITDEDRDSILDGLDEIEKEIEAGKFEWRPDR 95 (474)
T ss_pred hhhhcCCCCCCccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999988777999999999
Q ss_pred chhHHHHHHHHHHhhchhhhhhhhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 92 EDIHMNIESELIKRIEFQYYFLLLQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 92 EDiH~~iE~~L~e~iG~~gg~lHtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
||+|+++|++|++++|++|+++|+|||||| |++|+.+..+.. .+++.|.+++++|.+|-|
T Consensus 96 ed~h~~iE~~L~e~~G~~g~~lH~grSrND~v~Ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~~dtvm 165 (474)
T PLN02646 96 EDVHMNNEARLTELIGEPAKKLHTARSRNDQVATDTRLWCRDAIDVIRKRIKTLQVALVELAEKNVDLVV 165 (474)
T ss_pred CchHHHHHHHHHHHhchhhCcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 999999999999999999999999999975 689999888776 888999999999999877
No 5
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=99.95 E-value=2e-27 Score=213.77 Aligned_cols=138 Identities=36% Similarity=0.496 Sum_probs=129.7
Q ss_pred hhcccCCcchhHHHHHHhhCHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCCCCch
Q psy10234 14 LWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELED 93 (167)
Q Consensus 14 LW~gR~~~~~~~~~~~f~~s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~~~ED 93 (167)
+|+|||++++++.+..|+.|+.||+++++|||.+++||++||.++|+|++++++.|+++|+++..+...+.|.+++.+||
T Consensus 1 ~~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Ah~~~L~~~G~l~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~d 80 (455)
T TIGR00838 1 LWGGRFTGGMDPRVAKFNASLSFDKELAEYDIEGSIAHTKMLKKAGILTEEEAAKIIEGLNELKEEGREGPFILDPDDED 80 (455)
T ss_pred CCCccCCCCccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCcCCCCCcCc
Confidence 69999999999999999999999999999999999999999999999999999999999999998866688999999999
Q ss_pred hHHHHHHHHHHhhc-hhhhhhhhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 94 IHMNIESELIKRIE-FQYYFLLLQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 94 iH~~iE~~L~e~iG-~~gg~lHtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
+|++||++|++++| +.|+++|+|||||| |++|+.+..+.. .+.+.|.+++++|.+|-|
T Consensus 81 ~~~~ie~~l~e~~g~~~g~~iH~g~SrnD~~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~m 149 (455)
T TIGR00838 81 IHMAIERELIDRVGEDLGGKLHTGRSRNDQVATDLRLYLRDHVLELAEALLDLQDALIELAEKHVETLM 149 (455)
T ss_pred HHHHHHHHHHHHhCCCccCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEe
Confidence 99999999999999 88999999999975 579999887776 788899999999999877
No 6
>PRK00855 argininosuccinate lyase; Provisional
Probab=99.94 E-value=4.8e-27 Score=211.60 Aligned_cols=141 Identities=38% Similarity=0.552 Sum_probs=132.0
Q ss_pred hhhhhcccCCcchhHHHHHHhhCHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCCC
Q psy10234 11 NMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTE 90 (167)
Q Consensus 11 ~~kLW~gR~~~~~~~~~~~f~~s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~~ 90 (167)
-+++|++||++++++.+++|..|+.+|++++++|+.+++||+.||.++|+||+++++.|+++|+++..+...+.|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~Aha~~l~~~G~l~~~~a~~i~~al~~i~~~~~~~~~~~~~~ 82 (459)
T PRK00855 3 SNKLWGGRFSEGPDELVERFTASISFDKRLAEEDIAGSIAHARMLAKQGILSEEEAEKILAGLDEILEEIEAGKFEFSPE 82 (459)
T ss_pred cccccccCCCcchHHHHHHcccCccchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhcccCCcccCCC
Confidence 34799999999999999999999999999999999999999999999999999999999999999998766789999999
Q ss_pred CchhHHHHHHHHHHhhchhhhhhhhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 91 LEDIHMNIESELIKRIEFQYYFLLLQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 91 ~EDiH~~iE~~L~e~iG~~gg~lHtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
.||+|++||.+|++++|+.|+++|+|||||| |++|+.+..+.. .+.+.|.+++++|.+|-|
T Consensus 83 ~~d~~~~ie~~l~~~~g~~g~~iH~g~SrnD~~~Ta~~L~~r~~l~~l~~~L~~l~~~L~~~A~~~~~t~m 153 (459)
T PRK00855 83 LEDIHMAIEARLTERIGDVGGKLHTGRSRNDQVATDLRLYLRDEIDEIAELLLELQKALLDLAEEHADTIM 153 (459)
T ss_pred CCcHHHHHHHHHHHHhccccCcccCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEe
Confidence 9999999999999999988999999999975 579999888776 888999999999999876
No 7
>PRK04833 argininosuccinate lyase; Provisional
Probab=99.93 E-value=1e-25 Score=203.09 Aligned_cols=139 Identities=27% Similarity=0.414 Sum_probs=127.8
Q ss_pred hhhcccCCcchhHHHHHHhhCHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcC-ccccCCCC
Q psy10234 13 KLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIREN-RIELKTEL 91 (167)
Q Consensus 13 kLW~gR~~~~~~~~~~~f~~s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g-~~~~~~~~ 91 (167)
.+|++||+.++++.+..|+.++.||..|++|||.+++||+.||.++||||++++++|+++|+++.++...+ .+.+++..
T Consensus 2 ~~~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Aha~~l~e~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~ 81 (455)
T PRK04833 2 ALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTADEQQQLEEALNELLEEVRANPQQILASDA 81 (455)
T ss_pred cCcccccCCcchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhhhcCCcccCCCCC
Confidence 68999999998999999999999999999999999999999999999999999999999999997764333 56678999
Q ss_pred chhHHHHHHHHHHhhchhhhhhhhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 92 EDIHMNIESELIKRIEFQYYFLLLQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 92 EDiH~~iE~~L~e~iG~~gg~lHtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
||+|++||.+|++++|+.|+++|+|||||| |++|+.+..+.. .+.+.|.+++++|.+|-|
T Consensus 82 edv~~~ie~~L~~~~g~~g~~lH~grSrnD~~~Ta~rl~~r~~l~~l~~~l~~l~~~L~~~A~~~~~tvm 151 (455)
T PRK04833 82 EDIHSWVEGKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCKDQVAELLTALRQLQSALVETAENNQDAVM 151 (455)
T ss_pred chHHHHHHHHHHHHhccccCcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 999999999999999999999999999975 689999988776 888999999999999876
No 8
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.93 E-value=3.7e-25 Score=205.23 Aligned_cols=140 Identities=26% Similarity=0.388 Sum_probs=128.4
Q ss_pred hhhhcccCCcchhHHHHHHhhCHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcC-ccccCCC
Q psy10234 12 MKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIREN-RIELKTE 90 (167)
Q Consensus 12 ~kLW~gR~~~~~~~~~~~f~~s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g-~~~~~~~ 90 (167)
|.+|+|||++++++.+..|+.+..||+.|+.+||.+|+||+.||.+.||||++++++|.++|..+..+...+ .+..++.
T Consensus 1 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~e~i~~~~A~a~~l~~~Giip~~~a~~I~~~l~~~~~~~~~~~~~~~~~~ 80 (614)
T PRK12308 1 MALWGGRFSQAADTRFKQFNDSLRFDYRLAEQDIVGSIAWSKALLSVGVLSEEEQQKLELALNELKLEVMEDPEQILLSD 80 (614)
T ss_pred CcccccCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Confidence 579999999999999999999999999999999999999999999999999999999999999997663333 5667899
Q ss_pred CchhHHHHHHHHHHhhchhhhhhhhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 91 LEDIHMNIESELIKRIEFQYYFLLLQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 91 ~EDiH~~iE~~L~e~iG~~gg~lHtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
.||+|++||++|++++|++|+++|+|||||| |++|+.+..+.. .+.+.|.+.+++|.+|-|
T Consensus 81 ~ed~h~~ie~~L~~~~g~~~~~iH~g~S~nD~~~Ta~~L~~r~~~~~l~~~l~~l~~~l~~~a~~~~~t~m 151 (614)
T PRK12308 81 AEDIHSWVEQQLIGKVGDLGKKLHTGRSRNDQVATDLKLWCRQQGQQLLLALDQLQQQMVNVAERHQGTVL 151 (614)
T ss_pred cccHHHHHHHHHHHHhcccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEe
Confidence 9999999999999999999999999999975 579999888776 788899999999999887
No 9
>PRK06705 argininosuccinate lyase; Provisional
Probab=99.92 E-value=5.9e-25 Score=200.44 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=125.9
Q ss_pred hhhhcccCCcchhHHHHHHhhCHHHHHHhHHHh-hhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCCC
Q psy10234 12 MKLWKGCFKENLNKFVEQFTESITVDRRLYKED-IEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTE 90 (167)
Q Consensus 12 ~kLW~gR~~~~~~~~~~~f~~s~~~D~~L~~~d-I~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~~ 90 (167)
+++|++||++++++.+. |+.++.||.+.+.++ +.+++||+.||.++||||++++++|.++|.++.+ +..+.|.+++.
T Consensus 9 ~~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ve~Aha~~l~~~GiIp~e~a~~I~~al~~~~~-~~~~~l~~~~~ 86 (502)
T PRK06705 9 IKSEGADFPGKTYVDCV-LQHVFNFQRNYLLKDMFQVHKAHIVMLTEENLMKKEEAKFILHALKKVEE-IPEEQLLYTEQ 86 (502)
T ss_pred HHHhcccCCCCcchhHH-hhcccchhHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhh-cccCccccCCC
Confidence 47999999999999999 999999997766655 5599999999999999999999999999998843 57788999999
Q ss_pred CchhHHHHHHHHHHhhc-hhhhhhhhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhh
Q psy10234 91 LEDIHMNIESELIKRIE-FQYYFLLLQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRMR 152 (167)
Q Consensus 91 ~EDiH~~iE~~L~e~iG-~~gg~lHtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~~ 152 (167)
.||+|++||.++++.+| ++|||+|+|||||| |++|+.+..+.. .+.+.|++++++|.+|-|-
T Consensus 87 ~edv~~~ie~~l~~~~G~~~g~~lH~GrSrnD~v~Ta~~L~lr~~l~~l~~~l~~l~~~l~~~A~~~~~t~m~ 159 (502)
T PRK06705 87 HEDLFFLVEHLISQEAKSDFVSNMHIGRSRNDMGVTMYRMSLRRYVLRLMEHHLLLQESILQLAADHKETIMP 159 (502)
T ss_pred CCchHHHHHHHHHHhcCchhhccccCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEe
Confidence 99999999999999998 79999999999975 689999988887 7889999999999999873
No 10
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.81 E-value=1.4e-19 Score=173.95 Aligned_cols=135 Identities=14% Similarity=0.095 Sum_probs=114.5
Q ss_pred ccCCcchhHHHHHHhh---CHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCCCCch
Q psy10234 17 GCFKENLNKFVEQFTE---SITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELED 93 (167)
Q Consensus 17 gR~~~~~~~~~~~f~~---s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~~~ED 93 (167)
||......|.+.+..+ ...-|...+++|+.+++||+.||.++||||++++++|+++|.++.+. ..+.+..++..||
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ah~~~l~~~gii~~~~a~~I~~~l~~~~~~-~~~~~~~~~~~~~ 489 (887)
T PRK02186 411 GAARPGLPPEAQAIVYGPGASEAPLAELDHLAAIDEAHLVMLGDTGIVAPERARPLLDAHRRLRDA-GFAPLLARPAPRG 489 (887)
T ss_pred CccccCCChhhhceecCCCcchhhhhhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHh-HHhhCcCCCCCcc
Confidence 3444444555555544 33346778999999999999999999999999999999999998655 4568899999999
Q ss_pred hHHHHHHHHHHhhc-hhhhhhhhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhh
Q psy10234 94 IHMNIESELIKRIE-FQYYFLLLQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRMR 152 (167)
Q Consensus 94 iH~~iE~~L~e~iG-~~gg~lHtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~~ 152 (167)
+|+++|++|++++| ++|||+|+|||||| |++|+.+..+.. .++..|+++|++|.+|-|-
T Consensus 490 ~~~~~e~~L~~~~g~~~~~~lH~grSrnD~v~T~~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~ 559 (887)
T PRK02186 490 LYMLYEAYLIERLGEDVGGVLQTARSRNDINATTTKLHLREATSRAFDALWRLRRALVFKASANVDCALP 559 (887)
T ss_pred hHHHHHHHHHHHhChhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEee
Confidence 99999999999999 79999999999975 689999988877 8889999999999999873
No 11
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=99.80 E-value=4e-19 Score=158.98 Aligned_cols=120 Identities=38% Similarity=0.489 Sum_probs=111.1
Q ss_pred CHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCCCCchhHHHHHHHHHHhhchhhhh
Q psy10234 33 SITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQYYF 112 (167)
Q Consensus 33 s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~~~EDiH~~iE~~L~e~iG~~gg~ 112 (167)
|+.+|..++++++.+++||+.||.+.|+||++++++|.+++.++..++.++.|..++..+|+|+++|.+|++++|+.|++
T Consensus 1 ~~~~d~~~~~~~~~ve~A~a~al~~~Gii~~~~a~~I~~al~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g~~~~~ 80 (435)
T cd01359 1 SISFDRRLFEEDIAGSIAHAVMLAEQGILTEEEAAKILAGLAKIRAEIEAGAFELDPEDEDIHMAIERRLIERIGDVGGK 80 (435)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhcccCCccCCCCCCcHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999999999999999999999999999877778899999999999999999999999999999
Q ss_pred hhhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhh
Q psy10234 113 LLLQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRMR 152 (167)
Q Consensus 113 lHtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~~ 152 (167)
+|+|||||| |++|+.+..+.. .+.+.|.+++++|.+|-|-
T Consensus 81 iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~ 130 (435)
T cd01359 81 LHTGRSRNDQVATDLRLYLRDALLELLELLLDLQRALLDRAEEHADTIMP 130 (435)
T ss_pred hhccCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEec
Confidence 999999975 579999988776 7888999999999998773
No 12
>PRK14515 aspartate ammonia-lyase; Provisional
Probab=99.77 E-value=1.3e-18 Score=158.36 Aligned_cols=135 Identities=12% Similarity=0.035 Sum_probs=115.9
Q ss_pred hhhcccCCcchhHHHHHH-hhCHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCCCC
Q psy10234 13 KLWKGCFKENLNKFVEQF-TESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTEL 91 (167)
Q Consensus 13 kLW~gR~~~~~~~~~~~f-~~s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~~~ 91 (167)
.+||. .....+++| +++..+|.+++++|+.+++||+.||.++|+|+++++++|+++|++|......+.|++++..
T Consensus 27 ~~~g~----~t~ra~~~f~~~~~~~~~~~i~~~~~v~~A~a~~l~~~G~l~~~~~~~I~~al~ei~~~~~~~~f~~~~~~ 102 (479)
T PRK14515 27 AYYGV----QTMRAVENFPITGYKIHEGLIKAFAIVKKAAALANTDVGRLELNKGGAIAEAAQEILDGKWHDHFIVDPIQ 102 (479)
T ss_pred ccchH----HHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCCCCCccc
Confidence 46662 233358899 6789999999999999999999999999999999999999999999987666899999988
Q ss_pred --ch------hHHHHHHHHHHhhch-hhhhhh--------hhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHH
Q psy10234 92 --ED------IHMNIESELIKRIEF-QYYFLL--------LQYSELS-------IELKTELEDIHM---NIESELIKRIE 144 (167)
Q Consensus 92 --ED------iH~~iE~~L~e~iG~-~gg~lH--------tGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e 144 (167)
+| +|+.||+++++++|+ .|+++| +|||||| |++|+.+..+.. .+.+.|.++++
T Consensus 103 ~g~~t~~nmnvnevie~~~~~~~G~~~g~~~~~hpnd~vn~grS~ND~v~Ta~~L~~~~~l~~l~~~L~~L~~~L~~~A~ 182 (479)
T PRK14515 103 GGAGTSMNMNANEVIANRALELLGMEKGDYHYISPNSHVNMAQSTNDAFPTAIHIATLNALEGLLQTMGYMHDVFELKAE 182 (479)
T ss_pred CCCcccccchHHHHHHHHHHHHhCcccCCccccCccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 666699999999995 588555 9999975 578888887766 78889999999
Q ss_pred HHHHhhh
Q psy10234 145 SRVMSRM 151 (167)
Q Consensus 145 ~~~~~~~ 151 (167)
+|.+|-|
T Consensus 183 ~~~~~vm 189 (479)
T PRK14515 183 QFDHVIK 189 (479)
T ss_pred HhcCCcc
Confidence 9999876
No 13
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=99.75 E-value=2.5e-18 Score=155.59 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=113.3
Q ss_pred hhhhhcccCCcchhHHHHHHhhC-HHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCC
Q psy10234 11 NMKLWKGCFKENLNKFVEQFTES-ITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKT 89 (167)
Q Consensus 11 ~~kLW~gR~~~~~~~~~~~f~~s-~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~ 89 (167)
..++|+++ ++..+++|..| ..+|..++++++.+++||+.||.+.|+||+++++.|.++++++......+.|..++
T Consensus 18 ~~~l~g~~----~~~~~~~f~~s~~~~~~~~~~~~l~ve~A~a~al~~~Giip~~~a~~I~~al~~i~~~~~~~~~~~~~ 93 (464)
T PRK00485 18 ADALWGAQ----TQRSLENFPIGGERMPRELIRALALLKKAAARVNAELGLLDAEKADAIVAAADEVIAGKHDDHFPLDV 93 (464)
T ss_pred cccccchh----hHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCccccCCCcch
Confidence 34799986 56679999766 99999999999999999999999999999999999999999996542347787777
Q ss_pred ----CCchhHHHH----HHHHHHhhc-h--------hhhhhhhhhhhhh-------HHHHHHH-HHHHH---HHHHHHHH
Q psy10234 90 ----ELEDIHMNI----ESELIKRIE-F--------QYYFLLLQYSELS-------IELKTEL-EDIHM---NIESELIK 141 (167)
Q Consensus 90 ----~~EDiH~~i----E~~L~e~iG-~--------~gg~lHtGRSR~r-------l~lRd~l-~~i~~---~l~~~l~~ 141 (167)
..+|+|++| +..+.+..| + +++++|+|||||| |++|+.+ ..+.. .+.+.|.+
T Consensus 94 ~~~~~~~~~~~~i~~~i~~~~~~~~g~~~~~~~~~h~~~~vh~G~SrnD~v~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~ 173 (464)
T PRK00485 94 WQTGSGTQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAIVERLLPALEHLRDTLAA 173 (464)
T ss_pred hhccccccccccHHHHHHHHHHHhcCccccccCccCccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789998888 454455667 3 3444559999975 6899999 56665 88899999
Q ss_pred HHHHHHHhhh
Q psy10234 142 RIESRVMSRM 151 (167)
Q Consensus 142 ~~e~~~~~~~ 151 (167)
++++|.+|-|
T Consensus 174 ~A~~~~dt~m 183 (464)
T PRK00485 174 KAEEFADIVK 183 (464)
T ss_pred HHHHcCCCee
Confidence 9999999877
No 14
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=99.75 E-value=5.4e-18 Score=145.73 Aligned_cols=135 Identities=21% Similarity=0.237 Sum_probs=120.9
Q ss_pred ccCCcchhHHHHHHhhCHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcC-ccccCCCCchhH
Q psy10234 17 GCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIREN-RIELKTELEDIH 95 (167)
Q Consensus 17 gR~~~~~~~~~~~f~~s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g-~~~~~~~~EDiH 95 (167)
||+..+.++.+..|+.+..+|.++.++++.+..||+.++.+.|+||++++++|.++++++..++..+ .|.+++..+|+|
T Consensus 1 Gr~~~~~~~~~~~~s~~~~~~~~l~~~~~~~e~a~~~a~a~~g~i~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~ 80 (312)
T PF00206_consen 1 GRYEVPTDEMYAIFSDRARFDFWLAEYDIRVEAALAKALAEAGIIPKEAADAIVKALEEILEDGDLDDAFELDEIEEDIG 80 (312)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHTCTHGHHHHCSCSSSHH
T ss_pred CCcCCchHHHHHHHCHHHHhCCEeeccHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhccccccchhhhhccch
Confidence 6888899999999999999999999999999999999999999999999999999999999865543 678899999999
Q ss_pred HHHHHHHHHhhc-------hhhhhhhhhhhhhh-------HHHHHHHHH-HHH---HHHHHHHHHHHHHHHhhh
Q psy10234 96 MNIESELIKRIE-------FQYYFLLLQYSELS-------IELKTELED-IHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 96 ~~iE~~L~e~iG-------~~gg~lHtGRSR~r-------l~lRd~l~~-i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
..+|..|.+.+| +.++++|+|||||| |++|+.+.+ +.. .+.++|.+.+++|.+|-|
T Consensus 81 ~~~~~~l~~~~~e~~~~~~~~~~~vH~G~Ts~Di~~Ta~~l~lr~~~~~~l~~~l~~l~~~L~~~a~~~~~t~~ 154 (312)
T PF00206_consen 81 HAVEANLNEVLGELLGEPPEAGGWVHYGRTSNDIVDTALRLQLRDALLELLLERLKALIDALAELAEEHKDTPM 154 (312)
T ss_dssp HHHHHHHHHHHHHHHTHSSGGGGGTTTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSEE
T ss_pred hHHHHHHHHHhhhhhhccccccccccCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCcee
Confidence 999999999998 88999999999975 579998855 555 888999999999999876
No 15
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=99.72 E-value=2.5e-17 Score=142.24 Aligned_cols=111 Identities=21% Similarity=0.223 Sum_probs=99.1
Q ss_pred HHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCCCCchhHHHHHHHHHHhhchh-hhhhhhhhhh
Q psy10234 41 YKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQ-YYFLLLQYSE 119 (167)
Q Consensus 41 ~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~~~EDiH~~iE~~L~e~iG~~-gg~lHtGRSR 119 (167)
+++++.+++||+.||.+.|+||+++++.|.+++.++..+..++.+..++..||.|+++|.+|.+++|+. |+++|+||||
T Consensus 1 ~~~~l~ve~A~a~al~~~Gli~~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g~~~~~~lH~G~S~ 80 (325)
T cd01334 1 IRADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIAADQVEQEGSGTHDVMAVEEVLAERAGELNGGYVHTGRSS 80 (325)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCccccCeeeCCCCccHHHHHHHHHHHHhccccCCCCccCCCC
Confidence 367899999999999999999999999999999999876544445678999999999999999999976 9999999999
Q ss_pred hh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 120 LS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 120 ~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
|| |++|+.+..+.. .+.+.|.++|++|.+|-|
T Consensus 81 nDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m 122 (325)
T cd01334 81 NDIVDTALRLALRDALDILLPALKALIDALAAKAEEHKDTVM 122 (325)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEe
Confidence 75 579999888776 788899999999999877
No 16
>PRK12425 fumarate hydratase; Provisional
Probab=99.69 E-value=1.6e-16 Score=144.11 Aligned_cols=126 Identities=9% Similarity=-0.015 Sum_probs=106.4
Q ss_pred HHHHHhh-CHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCcccc----CCCCchhHHHH--
Q psy10234 26 FVEQFTE-SITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIEL----KTELEDIHMNI-- 98 (167)
Q Consensus 26 ~~~~f~~-s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~----~~~~EDiH~~i-- 98 (167)
.++.|.. ...+...+.+....+.+||+.||.++|+||++++++|+++|++|......+.|++ .+..||+|++|
T Consensus 27 a~~nf~~~~~~~~~~~i~a~~~ik~Aha~~l~~~G~l~~~~~~~I~~al~ei~~~~~~~~f~~~~~~~g~~ed~~mnvne 106 (464)
T PRK12425 27 SLINFAIGKERMPLAVLHALALIKKAAARVNDRNGDLPADIARLIEQAADEVLDGQHDDQFPLVVWQTGSGTQSNMNVNE 106 (464)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCCCccCCCCCCcchHHHHHHH
Confidence 4677753 3455588999999999999999999999999999999999999998866688884 44599999999
Q ss_pred --HHHHHHhhch-hhhh--------hhhhhhhhh-------HHHHHHHH-HHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 99 --ESELIKRIEF-QYYF--------LLLQYSELS-------IELKTELE-DIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 99 --E~~L~e~iG~-~gg~--------lHtGRSR~r-------l~lRd~l~-~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
|.++.+++|+ .||+ +|+|||||| |++|+.+. .+.. .+.++|.+.+++|.+|-|
T Consensus 107 vi~~~~~e~~G~~~g~~~~vhpn~~vh~g~S~ND~~~Ta~~L~~r~~l~~~l~~~L~~l~~~L~~~A~~~~~tim 181 (464)
T PRK12425 107 VIAGRANELAGNGRGGKSPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQLLPAIAELSGGLAEQSARHAKLVK 181 (464)
T ss_pred HHHHHHHHHhCcccccccccCchhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Confidence 6666778884 8889 999999975 57898884 5554 888999999999999876
No 17
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=99.68 E-value=1.3e-16 Score=144.22 Aligned_cols=137 Identities=15% Similarity=0.097 Sum_probs=113.5
Q ss_pred hhhhhcccCCcchhHHHHHHhhC-HHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCC
Q psy10234 11 NMKLWKGCFKENLNKFVEQFTES-ITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKT 89 (167)
Q Consensus 11 ~~kLW~gR~~~~~~~~~~~f~~s-~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~ 89 (167)
..++||+ +.+..+..|+.+ ..++..++++++.++.||+.||.+.|+||++++++|.++|.++.+....|.|.+++
T Consensus 14 ~~~~~g~----~~~~~~~~~~~~~~~~~~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~~~l~~i~~~~~~~~~~~~~ 89 (450)
T cd01596 14 ADAYYGA----QTQRALENFPISGERMPPELIRALALVKKAAALANAELGLLDEEKADAIVQACDEVIAGKLDDQFPLDV 89 (450)
T ss_pred ccccccH----hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCCcccH
Confidence 3469997 566678888854 34678999999999999999999999999999999999999997653447777776
Q ss_pred ----CCchhHHHHHH----HHHHhhch-hhhh--------hhhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHH
Q psy10234 90 ----ELEDIHMNIES----ELIKRIEF-QYYF--------LLLQYSELS-------IELKTELEDIHM---NIESELIKR 142 (167)
Q Consensus 90 ----~~EDiH~~iE~----~L~e~iG~-~gg~--------lHtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~ 142 (167)
..+|+|++||. .+++++|+ .|++ +|+|||||| |++|+.+..+.. .+.+.|.++
T Consensus 90 ~~~~~~~~~~~~v~~~i~~~~~~~~g~~~g~~~~h~~~~v~h~g~SrnD~v~t~~~L~lr~~l~~l~~~l~~l~~~L~~l 169 (450)
T cd01596 90 WQTGSGTSTNMNVNEVIANRALELLGGKKGKYPVHPNDDVNNSQSSNDDFPPAAHIAAALALLERLLPALEQLQDALDAK 169 (450)
T ss_pred HhccCcccccchHHHHHHHHHHHHhccccCCcccCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999887 55577784 5776 569999975 689999888776 788899999
Q ss_pred HHHHHHhhh
Q psy10234 143 IESRVMSRM 151 (167)
Q Consensus 143 ~e~~~~~~~ 151 (167)
+++|.+|-|
T Consensus 170 A~~~~~t~m 178 (450)
T cd01596 170 AEEFADIVK 178 (450)
T ss_pred HHHhcCCee
Confidence 999999987
No 18
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=99.67 E-value=2.5e-16 Score=143.04 Aligned_cols=126 Identities=14% Similarity=0.120 Sum_probs=105.4
Q ss_pred HHHHHhh-CHHHH--HHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCCC----CchhHHHH
Q psy10234 26 FVEQFTE-SITVD--RRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTE----LEDIHMNI 98 (167)
Q Consensus 26 ~~~~f~~-s~~~D--~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~~----~EDiH~~i 98 (167)
.+..|.. ...+- ..++++++.+++||+.||.+.|+||++++++|.+++.++.+....+.|.+++. .||+|++|
T Consensus 30 ~~~~f~~~~~~~~~~~~~~~~~l~ve~A~a~al~~~Gii~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~~~~e~~~~~v 109 (472)
T PRK12273 30 AVENFPISGVKISDYPELIRALAMVKKAAALANKELGLLDEEKADAIVAACDEILAGKLHDQFVVDVIQGGAGTSTNMNA 109 (472)
T ss_pred HHHcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCcccchhhccccchhhhHH
Confidence 4667742 22333 78999999999999999999999999999999999999976544567887776 89999999
Q ss_pred HHH----HHHhhc-hhhhh--hh------hhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 99 ESE----LIKRIE-FQYYF--LL------LQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 99 E~~----L~e~iG-~~gg~--lH------tGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
|.. +++++| +.|++ +| +|||||| |++|+.+..+.. .+.+.|.++|++|.+|-|
T Consensus 110 ~~~i~~~~~e~~g~~~~~~~~vHp~d~v~~GrSrnD~v~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~dt~m 185 (472)
T PRK12273 110 NEVIANRALELLGHEKGEYQYVHPNDHVNMSQSTNDAYPTAIRIALLLSLRKLLDALEQLQEAFEAKAKEFADILK 185 (472)
T ss_pred HHHHHHHHHHHhCcccCCcceeCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEE
Confidence 988 567999 45556 99 9999975 589999888776 888999999999999876
No 19
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=99.65 E-value=4.3e-16 Score=140.67 Aligned_cols=126 Identities=13% Similarity=0.124 Sum_probs=104.3
Q ss_pred HHHHHh-hCHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCCCC----chhHHHHH-
Q psy10234 26 FVEQFT-ESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTEL----EDIHMNIE- 99 (167)
Q Consensus 26 ~~~~f~-~s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~~~----EDiH~~iE- 99 (167)
.+..|- .-..+|..++++++.+++||+.||.+.|+||++++++|.+++.++.+....+.|++++.. ||+|+++|
T Consensus 25 ~~~~~~~~~~~~d~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~~al~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 104 (450)
T cd01357 25 ALENFPISGLKIHPELIRALAMVKKAAALANAELGLLDEEKAEAIVKACDEIIAGKLHDQFVVDVIQGGAGTSTNMNANE 104 (450)
T ss_pred HHHcCCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCCccchhhccccchhhhhHhH
Confidence 355664 245789999999999999999999999999999999999999999765223677777766 59777777
Q ss_pred ---HHHHHhhc-hhhhh--------hhhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 100 ---SELIKRIE-FQYYF--------LLLQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 100 ---~~L~e~iG-~~gg~--------lHtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
..+++++| +.|++ +|+|||||| |++|+.+..+.. .+.+.|.+++++|.+|-|
T Consensus 105 vi~~~~~e~~g~~~g~~~~~h~~~~vH~GrSrnD~v~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~~t~m 178 (450)
T cd01357 105 VIANRALELLGHEKGEYQYVHPNDHVNMSQSTNDVYPTALRLALILLLRKLLDALAALQEAFQAKAREFADVLK 178 (450)
T ss_pred HHHHHHHHHhCccccCCcccCCcccccCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEe
Confidence 65667799 56776 999999975 579988887776 888999999999999877
No 20
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=99.64 E-value=3.3e-16 Score=138.20 Aligned_cols=114 Identities=14% Similarity=0.133 Sum_probs=96.3
Q ss_pred HHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccC-CCCchhHHHHHHHHHHhhch-hhhhhh
Q psy10234 37 DRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELK-TELEDIHMNIESELIKRIEF-QYYFLL 114 (167)
Q Consensus 37 D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~-~~~EDiH~~iE~~L~e~iG~-~gg~lH 114 (167)
|..++++++.+++||+.||.+.|+||++++++|.++|..+..+... -.... +..+|+ .++|.+|++++|+ +|+++|
T Consensus 7 ~~~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~l~~~~~d~~~-~~~~~~~~~~~v-~~~e~~L~~~~g~~~~~~vH 84 (381)
T cd01595 7 EENKLRTWLDVEAALAEAQAELGLIPKEAAEEIRAAADVFEIDAER-IAEIEKETGHDV-IAFVYALAEKCGEDAGEYVH 84 (381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhcccCCHHH-HHHHHHHhCcCc-HHHHHHHHHHhhhHhhhHee
Confidence 6889999999999999999999999999999999999987433111 11222 457888 9999999999997 899999
Q ss_pred hhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhh
Q psy10234 115 LQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRMR 152 (167)
Q Consensus 115 tGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~~ 152 (167)
+|||||| |++|+.+..+.. .+.+.|.+++++|.+|-|-
T Consensus 85 ~g~S~nDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~dt~m~ 132 (381)
T cd01595 85 FGATSQDINDTALALQLRDALDIILPDLDALIDALAKLALEHKDTPML 132 (381)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 9999975 579998876655 8889999999999998773
No 21
>PLN00134 fumarate hydratase; Provisional
Probab=99.64 E-value=1.3e-15 Score=138.01 Aligned_cols=128 Identities=10% Similarity=-0.012 Sum_probs=107.5
Q ss_pred hHHHHHHhhC---HHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCC---C-----Cc
Q psy10234 24 NKFVEQFTES---ITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKT---E-----LE 92 (167)
Q Consensus 24 ~~~~~~f~~s---~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~---~-----~E 92 (167)
...++.|-.| ..+...+......+.+||+.||.++|+||+++++.|+++|++|.+....+.|++++ + ++
T Consensus 17 ~ra~~nf~~~~~~~~~~~~~i~a~~~v~~A~a~~l~~~G~l~~~~a~~I~~al~ei~~~~~~~~f~~~~~~~g~g~~~~~ 96 (458)
T PLN00134 17 QRSLQNFEIGGERERMPEPIVRAFGIVKKAAAKVNMEYGLLDPDIGKAIMQAADEVAEGKLDDHFPLVVWQTGSGTQTNM 96 (458)
T ss_pred HHHHHhcCCCCCccCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCccccccccCCcccccC
Confidence 3457788655 46667788888889999999999999999999999999999998876668898888 3 78
Q ss_pred hhHHHHHHHHHHhhc-hhhhh--hh------hhhhhhh-------HHHHHH-HHHHH---HHHHHHHHHHHHHHHHhhh
Q psy10234 93 DIHMNIESELIKRIE-FQYYF--LL------LQYSELS-------IELKTE-LEDIH---MNIESELIKRIESRVMSRM 151 (167)
Q Consensus 93 DiH~~iE~~L~e~iG-~~gg~--lH------tGRSR~r-------l~lRd~-l~~i~---~~l~~~l~~~~e~~~~~~~ 151 (167)
|||..||.++++++| +.|++ +| +|||||| |++|+. +..+. ..+.+.|.+.+++|.+|-|
T Consensus 97 ~v~evie~~l~e~~g~~~g~~~~lHp~d~vh~G~S~nDiv~Ta~~L~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~t~m 175 (458)
T PLN00134 97 NANEVIANRAAEILGGPVGEKSPVHPNDHVNRSQSSNDTFPTAMHIAAATEIHSRLIPALKELHESLRAKSFEFKDIVK 175 (458)
T ss_pred cHHHHHHHHHHHHhCcccCCccccCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 899999999999999 48888 88 9999976 467755 33343 3888999999999999876
No 22
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=99.60 E-value=2.5e-15 Score=135.99 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=110.5
Q ss_pred hhhhhcccCCcchhHHHHHH-hhCHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCC
Q psy10234 11 NMKLWKGCFKENLNKFVEQF-TESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKT 89 (167)
Q Consensus 11 ~~kLW~gR~~~~~~~~~~~f-~~s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~ 89 (167)
..++||. .....++.| +++..++..++...+.+.+||+.||.+.|+||+++++.|.++|.++......+.|..++
T Consensus 14 ~~~~~g~----~~~~~~~~f~~~~~~~~~~~i~~~l~ve~A~a~al~~~GiIp~~~a~~I~~al~~i~~~~~~~~~~~~~ 89 (455)
T cd01362 14 ADALWGA----QTQRSLENFPIGGERMPRELIRALGLLKKAAAQANAELGLLDEEKADAIVQAADEVIAGKLDDHFPLVV 89 (455)
T ss_pred cccchhH----HHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccccCCceeh
Confidence 4479952 455568899 45667779999999999999999999999999999999999999997543347787777
Q ss_pred ----CCchhHHHHHHHHH----Hhhc---------hhhhhhhhhhhhhh-------HHHHHHHHH-HHH---HHHHHHHH
Q psy10234 90 ----ELEDIHMNIESELI----KRIE---------FQYYFLLLQYSELS-------IELKTELED-IHM---NIESELIK 141 (167)
Q Consensus 90 ----~~EDiH~~iE~~L~----e~iG---------~~gg~lHtGRSR~r-------l~lRd~l~~-i~~---~l~~~l~~ 141 (167)
..+|+|++++..+. +..| ..++++|+|||||| |++|+.+.+ +.. .+.+.|.+
T Consensus 90 ~~~~~~~~~~~~v~~~i~~~~~~~~g~~~g~~~~~~~~~~vH~G~SrnDiv~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~ 169 (455)
T cd01362 90 WQTGSGTQTNMNVNEVIANRAIELLGGVLGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERLLPALKHLIDALDA 169 (455)
T ss_pred hhccccccccccHHHHHHHHHHHhcCcccCCcCcCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78898888666655 7778 34556999999975 568888865 433 88889999
Q ss_pred HHHHHHHhhh
Q psy10234 142 RIESRVMSRM 151 (167)
Q Consensus 142 ~~e~~~~~~~ 151 (167)
++++|.+|-|
T Consensus 170 ~A~~~~~t~m 179 (455)
T cd01362 170 KADEFKDIVK 179 (455)
T ss_pred HHHHccCCee
Confidence 9999999877
No 23
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=99.58 E-value=6.1e-15 Score=130.70 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=94.5
Q ss_pred HHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCCCCchhHHHHHHHHHHhhchhhhhhhhh
Q psy10234 37 DRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQYYFLLLQ 116 (167)
Q Consensus 37 D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~~~EDiH~~iE~~L~e~iG~~gg~lHtG 116 (167)
|...+++-+.+..||+.||.+.|+||++++++|.++++....++.. + .++..+|+ .++|.+|++++|++|+++|+|
T Consensus 13 ~~~~~~~~l~ve~A~a~~l~~~Glip~~~a~~I~~~l~~~~~~~~~--~-~~~~~~dv-~~~e~~L~~~~g~~~~~lH~G 88 (387)
T cd01360 13 EENKFRKWLEVEAAVCEAWAKLGVIPAEAAEEIRKKAKFDVERVKE--I-EAETKHDV-IAFVTAIAEYCGEAGRYIHFG 88 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCHHHHHH--H-HHHhCCCh-HHHHHHHHHHHHHhhhheeCC
Confidence 5677889999999999999999999999999999999765543322 1 13455777 899999999999999999999
Q ss_pred hhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 117 YSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 117 RSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
||||| |++|+.+..+.. .+.+.|.+++++|.+|-|
T Consensus 89 ~S~nDi~~ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m 133 (387)
T cd01360 89 LTSSDVVDTALALQLREALDIILKDLKELLEVLKKKALEHKDTVM 133 (387)
T ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 99975 579999887776 788999999999999877
No 24
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=99.55 E-value=2.1e-14 Score=130.59 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=104.0
Q ss_pred HHHHHhh-CHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCCCCc----hhHHH---
Q psy10234 26 FVEQFTE-SITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELE----DIHMN--- 97 (167)
Q Consensus 26 ~~~~f~~-s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~~~E----DiH~~--- 97 (167)
.+..|.. ...+...+++..+.+++||+.||.+.|+||++++++|.++++++......+.|++++..| |+|++
T Consensus 30 ~~~~f~~~~~~~~~~~i~a~~~ve~A~a~~l~~~Glip~~~a~~I~~al~~i~~~~~~d~f~~~~~~~~~~~~~~~n~~~ 109 (473)
T PRK13353 30 AVENFPITGYKIHPELIRAFAQVKKAAALANADLGLLPRRIAEAIVQACDEILAGKLHDQFIVDPIQGGAGTSTNMNANE 109 (473)
T ss_pred HHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCCCcchhhccccchhcchhhH
Confidence 4666642 223457889999999999999999999999999999999999997653337788887775 97776
Q ss_pred -HHHHHHHhhch-hhh--------hhhhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 98 -IESELIKRIEF-QYY--------FLLLQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 98 -iE~~L~e~iG~-~gg--------~lHtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
|++.|++++|+ .|+ ++|+|||||| |++|+.+..+.. .+.+.|.+++++|.+|-|
T Consensus 110 vi~~~l~e~~g~~~g~~~~~hp~d~vH~GrSrnD~v~Ta~~L~~r~~l~~l~~~L~~l~~~L~~~A~~~~~~im 183 (473)
T PRK13353 110 VIANRALELLGGEKGDYHYVSPNDHVNMAQSTNDVFPTAIRIAALNLLEGLLAAMGALQDVFEEKAAEFDHVIK 183 (473)
T ss_pred HHHHHHHHHhCccccCCccCCcccCccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Confidence 78888899995 577 4999999975 579998887766 888999999999999877
No 25
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.54 E-value=8.3e-15 Score=127.87 Aligned_cols=117 Identities=12% Similarity=0.118 Sum_probs=96.5
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCCCCchhHHHHHHHHHHhhc-hhhhh
Q psy10234 34 ITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRIE-FQYYF 112 (167)
Q Consensus 34 ~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~~~EDiH~~iE~~L~e~iG-~~gg~ 112 (167)
+-.|..++...+.+.+||+.||.+.|+||++++++|..+++++..+..... .......+.+.++|.+|++++| +.|++
T Consensus 14 i~sd~~~i~~~~~ve~A~a~al~~~Gii~~~~a~~I~~a~~~~~~d~~~~~-~~~~~~~~~~~~~~~~l~~~~g~~~g~~ 92 (338)
T TIGR02426 14 LFSDRAFLRAMLDFEAALARAQADAGLIPAEAAAAIEAACAAAAPDLEALA-HAAATAGNPVIPLVKALRKAVAGEAARY 92 (338)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhccCCCCHHHHH-hHHHhcCCcHHHHHHHHHHHhCccccCc
Confidence 445788899999999999999999999999999999999987643321100 1123456778899999999999 58999
Q ss_pred hhhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 113 LLLQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 113 lHtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
+|+|||||| |++|+.+..+.. .+.+.|.+++++|.+|-|
T Consensus 93 vH~G~S~nD~~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~m 141 (338)
T TIGR02426 93 VHRGATSQDVIDTSLMLQLRDALDLLLADLGRLADALADLAARHRDTPM 141 (338)
T ss_pred ccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 999999975 579998877765 888999999999999876
No 26
>PRK06390 adenylosuccinate lyase; Provisional
Probab=99.54 E-value=1.1e-14 Score=131.42 Aligned_cols=113 Identities=15% Similarity=0.140 Sum_probs=94.2
Q ss_pred HHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCC-CCchhHHHHHHHHHHhhchhhhhhhh
Q psy10234 37 DRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKT-ELEDIHMNIESELIKRIEFQYYFLLL 115 (167)
Q Consensus 37 D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~-~~EDiH~~iE~~L~e~iG~~gg~lHt 115 (167)
|...+.+++.++.||+.||.+.||||++++..|.+++.....+... -....+ ..+|+ .++|.+|++++|+.|+++|+
T Consensus 21 ~~~~~~~~l~ve~A~a~al~~~Giip~~~a~~I~~~l~~~~~d~~~-~~~~~~~~~~dv-~~~~~~L~~~~g~~~~~iH~ 98 (451)
T PRK06390 21 DENRLRYMLKVEAAIAKAEYEYGIIPRDAFLDIKNAVDSNSVRLER-VREIESEIKHDV-MALVEALSEQCSAGKNYVHF 98 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHHH-HHHHHHHhCCCc-HHHHHHHHHHhhhhhhheec
Confidence 6778999999999999999999999999999999998764332111 001122 26799 99999999999999999999
Q ss_pred hhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 116 QYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 116 GRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
|||||| |++|+.+..+.. .+.+.|.+++++|.+|-|
T Consensus 99 G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m 144 (451)
T PRK06390 99 GVTSNDINDTATALQIHDFVSIIKDDIKNLMETLIKLIDEYKDSPM 144 (451)
T ss_pred CccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 999975 579999877766 788899999999999987
No 27
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=99.51 E-value=2.5e-14 Score=128.93 Aligned_cols=112 Identities=17% Similarity=0.210 Sum_probs=92.2
Q ss_pred HHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHH--HHHHHhcCccccCCCCchhHHHHHHHHHHhhc-hhhhhh
Q psy10234 37 DRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNE--IEVDIRENRIELKTELEDIHMNIESELIKRIE-FQYYFL 113 (167)
Q Consensus 37 D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~--i~~~~~~g~~~~~~~~EDiH~~iE~~L~e~iG-~~gg~l 113 (167)
|...+..-+.+..||+.||.+.|+||++++++|.++|.. +..+ ..+.+. +..++.+.++|.+|++++| +.|+++
T Consensus 21 ~~~~~~~~l~ve~A~a~~l~~~Giip~~~a~~I~~~l~~~~i~~~-~~~~~~--~~~~~~v~~~e~~L~~~~~~~~~~~v 97 (449)
T PRK08540 21 EENKLQKMLDVEAALARAEAELGLIPEEAAEEINRKASTKYVKLE-RVKEIE--AEIHHDIMAVVKALSEVCEGDAGEYV 97 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHH-HHHHHH--HHhCCCcHHHHHHHHHHhhhhhhcce
Confidence 567788999999999999999999999999999999977 5422 111221 2334444999999999995 899999
Q ss_pred hhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 114 LLQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 114 HtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
|+|||||| |++|+.+..+.. .+.+.|.+++++|.+|-|
T Consensus 98 H~g~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~m 145 (449)
T PRK08540 98 HFGATSNDIIDTATALQLKDSLEILEEKLKKLRGVLLKKAEEHKNTVC 145 (449)
T ss_pred ecCccHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 99999976 578998887776 888999999999999877
No 28
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=99.51 E-value=1.8e-14 Score=129.27 Aligned_cols=113 Identities=10% Similarity=0.083 Sum_probs=92.1
Q ss_pred HHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccc-cCCCCchhHHHHHHHHHHhhc-hhhhhhh
Q psy10234 37 DRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIE-LKTELEDIHMNIESELIKRIE-FQYYFLL 114 (167)
Q Consensus 37 D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~-~~~~~EDiH~~iE~~L~e~iG-~~gg~lH 114 (167)
|..++...+.+.+||+.||.+.|+||++++++|.+++.++..+ .+.+. ..+..++.+.++|.+|++++| +.|+++|
T Consensus 17 ~~~~i~~~~~ve~A~a~~l~~~Gii~~~~a~~I~~al~~~~~~--~~~~~~~~~~~~~~v~a~e~~l~e~~g~~~g~~lH 94 (437)
T cd01597 17 DENRVQAMLDVEAALARAQAELGVIPKEAAAEIAAAADVERLD--LEALAEATARTGHPAIPLVKQLTAACGDAAGEYVH 94 (437)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccccCCC--HHHHHHHHHHhCCCcHHHHHHHHHHcCccccCeee
Confidence 5667889999999999999999999999999999998776221 12221 123345555699999999999 5699999
Q ss_pred hhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 115 LQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 115 tGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
+|||||| |++|+.+..+.. .|.+.|.+.+++|.+|-|
T Consensus 95 ~grSrnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~m 141 (437)
T cd01597 95 WGATTQDIIDTALVLQLRDALDLLERDLDALLDALARLAATHRDTPM 141 (437)
T ss_pred cCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Confidence 9999975 579999887776 888999999999999876
No 29
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=99.49 E-value=9.4e-14 Score=126.27 Aligned_cols=128 Identities=9% Similarity=0.056 Sum_probs=102.5
Q ss_pred hHHHHHHhh-CHHHH--HHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh-cCccccCCCC----chhH
Q psy10234 24 NKFVEQFTE-SITVD--RRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIR-ENRIELKTEL----EDIH 95 (167)
Q Consensus 24 ~~~~~~f~~-s~~~D--~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~-~g~~~~~~~~----EDiH 95 (167)
...++.|-. -..+. ...+...+.+..||+.||.+.|+||+++++.|.+++.++..... .+.+.+++.. ||+|
T Consensus 23 ~r~~~~~~~~~~~~~~~~~~i~~~l~ve~A~a~al~e~GiIp~~~a~~I~~al~~~~d~~~~~~~~~l~~~~~~~g~~~~ 102 (468)
T TIGR00839 23 LRASENFYISNNKISDIPEFVRGMVMVKKAAALANKELGTIPESIANAIVAACDEILNNGKCHDQFPVDVYQGGAGTSVN 102 (468)
T ss_pred HHHHHcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccccccccccHHHccCccccc
Confidence 334566652 22343 77899999999999999999999999999999999998754211 1256666666 5587
Q ss_pred HHH----HHHHHHhhc-hhhhhhh--------hhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 96 MNI----ESELIKRIE-FQYYFLL--------LQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 96 ~~i----E~~L~e~iG-~~gg~lH--------tGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
+++ |..|++++| +.|+++| +|||||| |++|+.+..+.. .+.+.|.+++++|.+|-|
T Consensus 103 ~~v~~vie~~l~e~~g~~~g~~~H~~p~~~v~~G~S~nD~v~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m 181 (468)
T TIGR00839 103 MNTNEVIANLALELMGHQKGEYQYLNPNDHVNKSQSTNDAYPTGFRIAVYSSLIKLVDAINQLRDGFEQKAKEFADILK 181 (468)
T ss_pred cchHHHHHHHHHHHhCccccCeeecCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCee
Confidence 776 999999999 7999999 7999975 579999777766 888999999999999877
No 30
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=99.47 E-value=2.7e-13 Score=121.72 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=90.0
Q ss_pred HHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHH-------HHHHHHHHhcCccccCCCCchhHHHHHHHHHHhhchh
Q psy10234 37 DRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKT-------LNEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQ 109 (167)
Q Consensus 37 D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~-------L~~i~~~~~~g~~~~~~~~EDiH~~iE~~L~e~iG~~ 109 (167)
|...+.+-+.+++||+.||.++|+||+++++.|.++ ++++.+. .. ...+|+ +++|.+|++++|++
T Consensus 16 ~~~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~~~~~~~d~~~l~~~-~~------~~~~~v-~~~e~~l~~~~g~~ 87 (435)
T TIGR00928 16 EENKFKTWLDVEVALLRALAELGVIPAEAVKEIRAKANFTDVDLARIKEI-EA------VTRHDV-KAVVYALKEKCGAE 87 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhCCCCccCHHHHHHH-HH------HHCcCh-HHHHHHHHHHhhhh
Confidence 467789999999999999999999999999999987 4444221 11 124666 99999999999999
Q ss_pred hhhhhhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 110 YYFLLLQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 110 gg~lHtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
|+++|+|||||| |++|+.+..+.. .+.+.|.+++++|.+|-|
T Consensus 88 ~~~vh~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m 139 (435)
T TIGR00928 88 GEFIHFGATSNDIVDTALALLLRDALEIILPKLKQLIDRLKDLAVEYKDTVM 139 (435)
T ss_pred hhheeecccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 999999999975 579998877765 788999999999999987
No 31
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=99.42 E-value=4.9e-13 Score=121.26 Aligned_cols=135 Identities=14% Similarity=0.107 Sum_probs=104.7
Q ss_pred hhhcccCCcchhHHHHHHhh-CHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccC---
Q psy10234 13 KLWKGCFKENLNKFVEQFTE-SITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELK--- 88 (167)
Q Consensus 13 kLW~gR~~~~~~~~~~~f~~-s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~--- 88 (167)
++||. .....++.|.. ...++..++...+.+.+||+.|+.+.|+||++.++.|.+++.++.+....+.|..+
T Consensus 17 ~~~g~----~t~r~~~~f~~~~~~~~~~~i~a~~~ve~A~a~a~~~~Giip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~ 92 (458)
T TIGR00979 17 KYWGA----QTQRSLENFKIGTEKMPLELIHAFAILKKAAAIVNEDLGKLDAKKADAIVQAADEILAGKLDDHFPLVVWQ 92 (458)
T ss_pred chhhH----HHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccCCCceeccc
Confidence 68852 33445777764 34566889999999999999999999999999999999999999764333566555
Q ss_pred -CCCchhHHHH----HHHHHHhhc-hhhhh--hhh------hhhhhh-------HHHHHHHH-HHHH---HHHHHHHHHH
Q psy10234 89 -TELEDIHMNI----ESELIKRIE-FQYYF--LLL------QYSELS-------IELKTELE-DIHM---NIESELIKRI 143 (167)
Q Consensus 89 -~~~EDiH~~i----E~~L~e~iG-~~gg~--lHt------GRSR~r-------l~lRd~l~-~i~~---~l~~~l~~~~ 143 (167)
+..+|+|+++ +..|++++| +.||+ +|+ |||||| |++|+.+. .+.. .+.+.|.+++
T Consensus 93 ~~~~~~~~m~~~~via~~l~e~~g~~~g~~~~vH~~d~vn~G~S~nDiv~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~~A 172 (458)
T TIGR00979 93 TGSGTQSNMNVNEVIANRAIELLGGKLGSKQPVHPNDHVNKSQSSNDTFPTAMHIAAVLAIKNQLIPALENLKKTLDAKS 172 (458)
T ss_pred ccccccccccHHHHHHHHHHHHcCcccCCCceeCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466555554 559999998 56655 997 999975 57888884 5544 8889999999
Q ss_pred HHHHHhhh
Q psy10234 144 ESRVMSRM 151 (167)
Q Consensus 144 e~~~~~~~ 151 (167)
++|.+|-|
T Consensus 173 ~~~~dt~m 180 (458)
T TIGR00979 173 KEFAHIVK 180 (458)
T ss_pred HHccCCee
Confidence 99999876
No 32
>PRK08470 adenylosuccinate lyase; Provisional
Probab=99.36 E-value=1.8e-12 Score=116.97 Aligned_cols=110 Identities=19% Similarity=0.212 Sum_probs=90.9
Q ss_pred HHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHH-HHHHHHhcCccccCCCCchhHHHHHHHHHHhhchhhhhhhh
Q psy10234 37 DRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLN-EIEVDIRENRIELKTELEDIHMNIESELIKRIEFQYYFLLL 115 (167)
Q Consensus 37 D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~-~i~~~~~~g~~~~~~~~EDiH~~iE~~L~e~iG~~gg~lHt 115 (167)
|...+..-+.+..||+.||.+.|+||+++++.|.+++. ++... . ++. ++..+|+ .+++..|.+++|+.|+++|+
T Consensus 16 ~~~~~~~~l~ve~A~a~al~~~G~Ip~~~a~~I~~~~~~d~~~~-~--~~~-~~~~~dv-~~~v~~L~e~~g~~~~~vH~ 90 (442)
T PRK08470 16 MQAKYDAWLEVEKAAVKAWNKLGLIPDSDCEKICKNAKFDIARI-D--EIE-KTTKHDL-IAFLTSVSESLGEESRFVHY 90 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccchHHH-H--HHH-HccCCCh-HHHHHHHHHHccccccceec
Confidence 56778899999999999999999999999999999874 12111 1 111 4567999 56679999999999999999
Q ss_pred hhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 116 QYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 116 GRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
|||||| |++|+.+..+.. .+.+.|.++|++|.+|-|
T Consensus 91 G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m 136 (442)
T PRK08470 91 GMTSSDCIDTAVALQMRDSLKLIIEDVKNLMEAIKKRALEHKDTLM 136 (442)
T ss_pred CCChhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 999975 579999876665 788899999999999877
No 33
>PRK09285 adenylosuccinate lyase; Provisional
Probab=99.25 E-value=1.8e-11 Score=111.08 Aligned_cols=130 Identities=13% Similarity=0.127 Sum_probs=97.0
Q ss_pred hhhcccCCcchhHHHHHHhhCHHHHHHhHHHhhhhhHHHHHHHHHcCC---CCHHHHHH---HHHHHHHHHHHHhcCccc
Q psy10234 13 KLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGL---VKGEEKDI---IIKTLNEIEVDIRENRIE 86 (167)
Q Consensus 13 kLW~gR~~~~~~~~~~~f~~s~~~D~~L~~~dI~~s~AHv~mL~~~GI---Is~eea~~---Il~~L~~i~~~~~~g~~~ 86 (167)
..|++||...+.+...-|. |..++++++.+..||+.++.+.|+ ||+..++. |.+.. .++..+.+.
T Consensus 10 ~p~~~ry~~~~~e~~~~~s-----~~~~~~~~l~vE~A~a~a~a~~g~~~~ip~~~~~~~~~i~~~~----~~~~~~d~~ 80 (456)
T PRK09285 10 SPLDGRYASKTAALRPIFS-----EFGLIRYRVQVEVEWLIALAAHPGIPEVPPFSAEANAFLRAIV----ENFSEEDAA 80 (456)
T ss_pred CCCccccCCCCHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH----HhhCcccHH
Confidence 4899999874444444453 478899999999999999999998 55544444 54433 122222233
Q ss_pred cCCCCchh--H--HHHHHHHHHhhc------hhhhhhhhhhhhhh-------HHHHHHHHH-HHH---HHHHHHHHHHHH
Q psy10234 87 LKTELEDI--H--MNIESELIKRIE------FQYYFLLLQYSELS-------IELKTELED-IHM---NIESELIKRIES 145 (167)
Q Consensus 87 ~~~~~EDi--H--~~iE~~L~e~iG------~~gg~lHtGRSR~r-------l~lRd~l~~-i~~---~l~~~l~~~~e~ 145 (167)
.-...|+. | .++|.+|.+++| +.|+++|+|||||| |++|+.+.. +.. .+.+.|.+++++
T Consensus 81 ~i~~~e~~~~hdv~a~~~~l~~~~~~~~~~~~~~~~vH~G~Ts~Di~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~lA~~ 160 (456)
T PRK09285 81 RIKEIERTTNHDVKAVEYFLKEKLAGLPELEAVSEFIHFACTSEDINNLSHALMLKEAREEVLLPALRELIDALKELAHE 160 (456)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHhcccCcchhHHhHccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666 7 999999999997 57899999999975 578988776 555 888999999999
Q ss_pred HHHhhh
Q psy10234 146 RVMSRM 151 (167)
Q Consensus 146 ~~~~~~ 151 (167)
|.+|-|
T Consensus 161 ~~~t~m 166 (456)
T PRK09285 161 YADVPM 166 (456)
T ss_pred cCCCee
Confidence 999877
No 34
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=99.16 E-value=6.9e-11 Score=103.97 Aligned_cols=113 Identities=10% Similarity=0.015 Sum_probs=91.5
Q ss_pred HHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccc-cCCCCchhHHHHHHHHHHhhc-hhhhhhh
Q psy10234 37 DRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIE-LKTELEDIHMNIESELIKRIE-FQYYFLL 114 (167)
Q Consensus 37 D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~-~~~~~EDiH~~iE~~L~e~iG-~~gg~lH 114 (167)
|...+...+.+.+|++.++.+.|+||++.++.|.+++.++..+.. .+. .....++.+..+++.|.+++| +.|+++|
T Consensus 26 ~~~~i~a~l~vE~A~a~a~~~~G~Ip~~~a~~I~~a~~~~~~d~~--~~~~~~~~~g~~v~~~v~~l~~~~g~~~~~~vH 103 (351)
T PRK05975 26 AEADIAAMLAFEAALAEAEAEHGIIPAEAAERIAAACETFEPDLA--ALRHATARDGVVVPALVRQLRAAVGEEAAAHVH 103 (351)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCCHH--HHhhHHHhcCCcHHHHHHHHHHHhCchhhCccc
Confidence 567788999999999999999999999999999999977532211 111 123344566889999999998 6899999
Q ss_pred hhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 115 LQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 115 tGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
+|||||| |++|+.+..+.. .+.++|.+++++|.+|-|
T Consensus 104 ~G~TsnDi~dTa~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m 150 (351)
T PRK05975 104 FGATSQDVIDTSLMLRLKAASEILAARLGALIARLDALEATFGQNAL 150 (351)
T ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 9999976 578998776665 788899999999999876
No 35
>PRK07492 adenylosuccinate lyase; Provisional
Probab=98.82 E-value=3.1e-08 Score=89.55 Aligned_cols=106 Identities=11% Similarity=0.066 Sum_probs=82.6
Q ss_pred HHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHH-------HHHHHHHhcCccccCCCCchhHHHHHHHHHHhhchhh
Q psy10234 38 RRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTL-------NEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQY 110 (167)
Q Consensus 38 ~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L-------~~i~~~~~~g~~~~~~~~EDiH~~iE~~L~e~iG~~g 110 (167)
...+..-+.+-.|-+..+.+.|+||++.++.|.+.. ..|.+.. ...--|+ .++|+.|++++|+.|
T Consensus 17 ~~~~~~~l~vE~ala~a~~~~g~ip~~aa~~i~~~~~~~~~d~~~~~~~~-------~~~~h~v-~a~~~~L~~~~g~~~ 88 (435)
T PRK07492 17 ETKFRIWFEIEAHACEAQAELGVIPKEAAETIWEKGKDAEFDVARIDEIE-------AVTKHDV-IAFLTHLAEFVGPDA 88 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcccCCCHHHHHHHH-------HHhCCCh-HHHHHHHHHHhhHhh
Confidence 345666677778888889999999999999997652 2222210 1123455 899999999999999
Q ss_pred hhhhhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 111 YFLLLQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 111 g~lHtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
+++|+|||||| |++|+.+..+.. .+.+.|.+++++|.+|-|
T Consensus 89 ~~vH~G~Ts~Di~dTa~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m 139 (435)
T PRK07492 89 RFVHQGMTSSDVLDTCLNVQLVRAADLLLADLDRVLAALKKRAFEHKDTPT 139 (435)
T ss_pred hhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 99999999975 578888776665 788899999999999877
No 36
>PRK07380 adenylosuccinate lyase; Provisional
Probab=98.78 E-value=4.9e-08 Score=88.16 Aligned_cols=107 Identities=11% Similarity=0.076 Sum_probs=84.5
Q ss_pred HHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHH----HHHHHHHHhcCccccCCCCchhHHHHHHHHHHhhchhhhh
Q psy10234 37 DRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKT----LNEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQYYF 112 (167)
Q Consensus 37 D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~----L~~i~~~~~~g~~~~~~~~EDiH~~iE~~L~e~iG~~gg~ 112 (167)
|...+..-+.+-.|-+..+.+.|+||++.++.|.+. +..|.+.. ...--|| .++.+.|.+++|+.|++
T Consensus 16 ~~~~~~~~l~vE~ala~a~~~~g~ip~~aa~~i~~~~~~d~~~i~~~~-------~~~~h~v-~a~v~~l~~~~g~~~~~ 87 (431)
T PRK07380 16 DTAKFQTWLDVEIAVCEAQAELGKIPQEAVEEIKAKANFDPQRILEIE-------AEVRHDV-IAFLTNVNEYVGDAGRY 87 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccCCCHHHHHHHH-------HHhCCCh-HHHHHHHHHHHHHhhcc
Confidence 455677777888899999999999999999999763 22232221 1224566 67888899999999999
Q ss_pred hhhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 113 LLLQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 113 lHtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
+|+|||||| |++|+.+..+.. .+.+.|.+++++|.+|-|
T Consensus 88 vH~G~Ts~Di~dTa~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m 136 (431)
T PRK07380 88 IHLGMTSSDVLDTGLALQLVASLDLLLEELEDLIQAIRYQAREHRNTVM 136 (431)
T ss_pred ccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence 999999976 578988877665 788899999999999877
No 37
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=98.57 E-value=1.1e-07 Score=85.84 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=84.1
Q ss_pred HHHhHHHhhhhhHHHHHHHHHcCCCCH------HHHHHHHHHHHH---HH-HHHhcCccccCCCCchhHHHHHHHHHHhh
Q psy10234 37 DRRLYKEDIEGSIAHVTMLHSCGLVKG------EEKDIIIKTLNE---IE-VDIRENRIELKTELEDIHMNIESELIKRI 106 (167)
Q Consensus 37 D~~L~~~dI~~s~AHv~mL~~~GIIs~------eea~~Il~~L~~---i~-~~~~~g~~~~~~~~EDiH~~iE~~L~e~i 106 (167)
|...+..-+.+-.|-+..+.+.|+||+ +.++.|.+.... +. ..+...+ ...--|+ .++|.+|.+++
T Consensus 7 ~~~~~~~~l~vE~ala~a~a~~g~Ip~~~~~~~~aa~~i~~~~~~~~~~d~~~~~~~~---~~~~hdv-~al~~~l~~~~ 82 (425)
T cd01598 7 EYALIKYRVQVEVEWLIALSNLEEIPEVPPLTKEELKFLRAIIENFSEEDALRIKEIE---ATTNHDV-KAVEYFLKEKF 82 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhhcCccCHHHHHHHH---HHHCCCc-HHHHHHHHHHh
Confidence 556677888889999999999999999 888888775532 10 0011110 1223566 89999999999
Q ss_pred c------hhhhhhhhhhhhhh-------HHHHHHHHHH----HHHHHHHHHHHHHHHHHhhh
Q psy10234 107 E------FQYYFLLLQYSELS-------IELKTELEDI----HMNIESELIKRIESRVMSRM 151 (167)
Q Consensus 107 G------~~gg~lHtGRSR~r-------l~lRd~l~~i----~~~l~~~l~~~~e~~~~~~~ 151 (167)
| +.|+++|+|||||| |.+|+.+.++ +..+.+.|.+++++|.+|-|
T Consensus 83 g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~lA~~~~dt~m 144 (425)
T cd01598 83 ETLGLLKKIKEFIHFACTSEDINNLAYALMIKEARNEVILPLLKEIIDSLKKLAKEYADVPM 144 (425)
T ss_pred cccccchhhhhHhccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence 7 46889999999975 5789988554 33889999999999999987
No 38
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=98.50 E-value=8.3e-07 Score=80.21 Aligned_cols=105 Identities=10% Similarity=-0.017 Sum_probs=80.2
Q ss_pred HhHHHhhhhhHHHHHHHHHcCC-CCHHHHHHHHHHH-----HHHHHHHhcCccccCCCCchhHHHHHHHHHHhhchhhhh
Q psy10234 39 RLYKEDIEGSIAHVTMLHSCGL-VKGEEKDIIIKTL-----NEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQYYF 112 (167)
Q Consensus 39 ~L~~~dI~~s~AHv~mL~~~GI-Is~eea~~Il~~L-----~~i~~~~~~g~~~~~~~~EDiH~~iE~~L~e~iG~~gg~ 112 (167)
..+...+..-.|-+....+.|+ ||++.++.|.+.. ..|.+. .....-|| .+++..|.+++|+.|++
T Consensus 18 ~~~~~~l~~e~ala~a~~~~g~~ip~~~a~~i~~~~~~~d~~~i~~~-------e~~~~hdv-~a~~~~l~~~~~~~~~~ 89 (436)
T cd03302 18 KKFSTWRKLWLWLAEAEKELGLDISDEQIEEMKANVENIDFEIAAAE-------EKKLRHDV-MAHVHAFGLLCPAAAGI 89 (436)
T ss_pred HHHHHHHHHHHHHHHhhHHhCCCCCHHHHHHHHHhhhcCCHHHHHHH-------HHHhCcCc-hHHHHHHHHHhHhccCe
Confidence 4566677777788888889999 9999999997754 112221 01234677 55666799999999999
Q ss_pred hhhhhhhh-------hHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 113 LLLQYSEL-------SIELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 113 lHtGRSR~-------rl~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
+|+|||++ .|++|+.+..+.. .+.+.|.+++++|.+|-|
T Consensus 90 vH~G~TS~Di~dta~~L~lr~a~~~l~~~L~~l~~~L~~~A~~~~dt~m 138 (436)
T cd03302 90 IHLGATSCFVTDNTDLIQIRDALDLILPKLAAVIDRLAEFALEYKDLPT 138 (436)
T ss_pred eeeCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 99999764 3689999877765 888899999999999877
No 39
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=98.31 E-value=6e-06 Score=74.88 Aligned_cols=111 Identities=10% Similarity=0.127 Sum_probs=82.2
Q ss_pred HHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHH--HH-HHHhcCccccCCCCchhHHHHHHHHHHhhc----hh
Q psy10234 37 DRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNE--IE-VDIRENRIELKTELEDIHMNIESELIKRIE----FQ 109 (167)
Q Consensus 37 D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~--i~-~~~~~g~~~~~~~~EDiH~~iE~~L~e~iG----~~ 109 (167)
|...+...+.+-.|-+....+.|+||++.++.|.++.+. +. ..+..|. ...--++ ..+...|.+.+| ++
T Consensus 23 ~~~~i~a~l~ve~A~A~a~~~~G~ip~~~a~~I~~a~~~~~~d~~~~~~~~---~~~~~~~-~~lv~~l~~~~~~~~~~~ 98 (452)
T PRK09053 23 DRATVQRMLDFEAALARAEAACGVIPAAAVAPIEAACDAERLDLDALAQAA---ALAGNLA-IPLVKQLTAQVAARDAEA 98 (452)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccccCCCHHHHHHHH---hhcCCch-HHHHHHHHHHhcccCcch
Confidence 566788888999999999999999999999999987532 10 0111110 0011133 555667888886 57
Q ss_pred hhhhhhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 110 YYFLLLQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 110 gg~lHtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
++++|+|||||| |++|+.+..+.. .+.+.|.+.+++|.+|-|
T Consensus 99 ~~~vH~G~SsnDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~ 150 (452)
T PRK09053 99 ARYVHWGATSQDIIDTGLVLQLRDALDLLEPDLDRLCDALATLAARHRATPM 150 (452)
T ss_pred hccccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCee
Confidence 999999999976 468888877665 788899999999999876
No 40
>PLN02848 adenylosuccinate lyase
Probab=98.31 E-value=2.7e-06 Score=77.62 Aligned_cols=111 Identities=11% Similarity=0.116 Sum_probs=82.8
Q ss_pred HHHhHHHhhhhhHHHHHHHHHcCCC---CH---HHHHHHHHHHHHHH----HHHhcCccccCCCCchhHHHHHHHHHHhh
Q psy10234 37 DRRLYKEDIEGSIAHVTMLHSCGLV---KG---EEKDIIIKTLNEIE----VDIRENRIELKTELEDIHMNIESELIKRI 106 (167)
Q Consensus 37 D~~L~~~dI~~s~AHv~mL~~~GII---s~---eea~~Il~~L~~i~----~~~~~g~~~~~~~~EDiH~~iE~~L~e~i 106 (167)
|..++.+-+.+-.|.+..+.+.|+| |+ +.++.|......+. ..+.+.+ ....-|+ .++|..|.+++
T Consensus 32 d~a~~~~~l~vE~ala~a~a~~g~i~~~P~i~~~aa~~i~~~~~~~~~~d~~~~~~~e---~~t~hdv-~a~~~~l~~~~ 107 (458)
T PLN02848 32 EFGLIRYRVLVEVKWLLKLSQIPEVTEVPPFSDEANSFLEGIIAGFSVDDALEVKKIE---RVTNHDV-KAVEYFLKQKC 107 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCHhhHHHHHHHH---HHhCCCc-HHHHHHHHHHh
Confidence 5667888888999999999999986 55 88888877652220 1000000 1234566 88999999999
Q ss_pred c---h---hhhhhhhhhhhhh-------HHHHHHHHH-HHH---HHHHHHHHHHHHHHHhhh
Q psy10234 107 E---F---QYYFLLLQYSELS-------IELKTELED-IHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 107 G---~---~gg~lHtGRSR~r-------l~lRd~l~~-i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
| + .++++|+|||||| |++|+.+.. +.. .+.+.|.+++++|.+|-|
T Consensus 108 ~~~~~~~~~~~~vH~G~TsqDi~dTa~~L~lr~a~~~~l~~~L~~l~~aL~~lA~~~~dt~m 169 (458)
T PLN02848 108 KSHPELAKVLEFFHFACTSEDINNLSHALMLKEGVNSVVLPTMDEIIKAISSLAHEFAYVPM 169 (458)
T ss_pred ccccchhhhhCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Confidence 6 2 5689999999975 578998877 554 888899999999999876
No 41
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=97.32 E-value=0.00057 Score=55.25 Aligned_cols=54 Identities=19% Similarity=0.113 Sum_probs=43.7
Q ss_pred HHHHHHHhhch-hhhhh-----hhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 98 IESELIKRIEF-QYYFL-----LLQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 98 iE~~L~e~iG~-~gg~l-----HtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
||..|+++.|+ .+|.. |.|||||| +++|+.+..+.. .+...+..+++.|.+|-|
T Consensus 16 i~~~L~~~~~~~~~~~~~~~~~h~g~s~~d~~~t~~~~~~~~~l~~l~~~l~~~~~~l~~~a~~~~~~~~ 85 (231)
T cd01594 16 VEEVLAGRAGELAGGLHGSALVHKGRSSNDIGTTALRLALRDALDDLLPLLKALIDALALKAEAHKGTVM 85 (231)
T ss_pred HHHHHHHHHHHHhccccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEe
Confidence 99999999995 56666 89999965 577887777666 677788999999988876
No 42
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=96.60 E-value=0.026 Score=51.67 Aligned_cols=107 Identities=14% Similarity=0.109 Sum_probs=82.9
Q ss_pred HHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHH-------HHHHHHHHhcCccccCCCCchhHHHHHHHHHHhhc-h
Q psy10234 37 DRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKT-------LNEIEVDIRENRIELKTELEDIHMNIESELIKRIE-F 108 (167)
Q Consensus 37 D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~-------L~~i~~~~~~g~~~~~~~~EDiH~~iE~~L~e~iG-~ 108 (167)
|...++.-+.+-.|-+..+++-|+||++.++.|.+. ++.|.+. .. ...-|| .+++..|.+.+| +
T Consensus 16 ~~~~~~~~l~vE~ala~A~aelG~Ip~~a~~~I~~~~~~~~~d~~~i~ei-e~------~t~HdV-~a~v~~l~e~~~~~ 87 (438)
T COG0015 16 EEAKLRAWLKVEAALARAQAELGVIPAEAAAEIDAAAAFAEFDLERIKEI-EA------ETGHDV-KALVRALAEKVGEE 87 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccccCHHHHHHH-HH------HhCCCc-HHHHHHHHHhcCcc
Confidence 455677778888999999999999999999888877 4555443 11 124677 899999999999 7
Q ss_pred hhhhhhhhhhhhhH-------HHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234 109 QYYFLLLQYSELSI-------ELKTELEDIHM---NIESELIKRIESRVMSRM 151 (167)
Q Consensus 109 ~gg~lHtGRSR~rl-------~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~ 151 (167)
.++++|-|=..+|+ -+|+.+.-|.. .+.+.|.++|.+|.+|-|
T Consensus 88 ~~~~VH~GaTS~DI~Dta~~L~lk~a~~ii~~~l~~l~~~L~~~A~~~k~t~m 140 (438)
T COG0015 88 ASEYVHFGATSQDIIDTALALQLKEALDLILPDLKRLIEALAELALEHKDTPM 140 (438)
T ss_pred cccceecccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 88999999888653 45555553332 677799999999999987
No 43
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=80.41 E-value=13 Score=25.00 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=35.2
Q ss_pred hHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhc
Q psy10234 40 LYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRE 82 (167)
Q Consensus 40 L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~ 82 (167)
|+...+..-++-+--..+.|.||.+.|..|...++.-......
T Consensus 12 l~~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~~q 54 (59)
T PF10925_consen 12 LYKQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQRQEYMQQ 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777888889999999999999999999987766443
No 44
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=72.65 E-value=9.4 Score=22.16 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=21.5
Q ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy10234 48 SIAHVTMLHSCGLVKGEEKDIIIKTL 73 (167)
Q Consensus 48 s~AHv~mL~~~GIIs~eea~~Il~~L 73 (167)
-+.....|...|+||.+|..+....|
T Consensus 4 ~L~~L~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 4 RLEKLKELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35677899999999999998877655
No 45
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=65.30 E-value=76 Score=29.51 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=84.3
Q ss_pred hhhhcccCCcchhHHHHHHhhCHH-HHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCC-
Q psy10234 12 MKLWKGCFKENLNKFVEQFTESIT-VDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKT- 89 (167)
Q Consensus 12 ~kLW~gR~~~~~~~~~~~f~~s~~-~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~- 89 (167)
.++|+. .....++.|..+-. +-.++....-..-+|-+....+-|.++++-+..|..+-++|.+---.+.|+++.
T Consensus 18 d~~wgA----QTqRs~~nF~ig~~~mp~~~I~Al~~lKkaaA~~N~~LG~L~~~~a~aI~~Aadev~~Gk~d~~FPl~Vw 93 (462)
T COG0114 18 DALWGA----QTQRSLENFPIGGEKMPREIIRALGLLKKAAAQVNADLGLLDPEKADAIIAAADEVLAGKHDDHFPLDVW 93 (462)
T ss_pred HHHHHH----HHHHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCcccCCCCeEEE
Confidence 378983 23335777765444 567788888888888899999999999999999999999987754456665421
Q ss_pred -------CCchhHHHHHHHHHHhhc-hhhh--hhh------hhhhhhhHH-----------HHHHHHHHHHHHHHHHHHH
Q psy10234 90 -------ELEDIHMNIESELIKRIE-FQYY--FLL------LQYSELSIE-----------LKTELEDIHMNIESELIKR 142 (167)
Q Consensus 90 -------~~EDiH~~iE~~L~e~iG-~~gg--~lH------tGRSR~rl~-----------lRd~l~~i~~~l~~~l~~~ 142 (167)
..=-+-.-|=.+=++.+| +.|. .+| .+-|.||-| +.++|+--++.|..+|-+.
T Consensus 94 QTGSGTqsNMN~NEVIanrA~e~~gg~~g~~~~VHPNDhVN~sQSSNDtfPTAmhIAa~~~v~~~LiPaL~~L~~~L~~K 173 (462)
T COG0114 94 QTGSGTQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAVVNRLIPALKHLIKTLAAK 173 (462)
T ss_pred ecCCCccccccHHHHHHHHHHHHhCcccCCCCCCCCCCcCCcccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 122233344455556666 3332 233 455667753 4444444445566667666
Q ss_pred HHHHH
Q psy10234 143 IESRV 147 (167)
Q Consensus 143 ~e~~~ 147 (167)
+++..
T Consensus 174 a~~~~ 178 (462)
T COG0114 174 AEEFA 178 (462)
T ss_pred HHHHh
Confidence 66544
No 46
>PF09920 DUF2150: Uncharacterized protein conserved in archaea (DUF2150); InterPro: IPR014518 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=59.61 E-value=59 Score=26.89 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=50.2
Q ss_pred HHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCCCCchhHHHHHHHHHHhhc
Q psy10234 41 YKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRIE 107 (167)
Q Consensus 41 ~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~~~EDiH~~iE~~L~e~iG 107 (167)
+..|+....+-++.+.+.|-||+++|...+...+.|--. ..++..||.-+-|+..-+...+
T Consensus 39 ~~dDv~lA~lKIi~~~~~~~l~keeAl~~L~~v~eIVl~------ev~~~~Ed~~~~i~~vQ~SL~~ 99 (190)
T PF09920_consen 39 FQDDVILACLKIIAAYQNGELSKEEALEELEEVREIVLS------EVDFDDEDKDMMIDSVQTSLVV 99 (190)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc------CCCCCchHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999988664 2245578888888887777766
No 47
>PF07408 DUF1507: Protein of unknown function (DUF1507); InterPro: IPR009983 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; however they form alpha helical bundles and are thought to be involved in control of cell shape [].; PDB: 2ODM_B 2GBO_B.
Probab=58.45 E-value=32 Score=25.23 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=26.2
Q ss_pred HHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy10234 36 VDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNE 75 (167)
Q Consensus 36 ~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~ 75 (167)
.|..+|...-.++.| .+.|+|+.+++++|+..|++
T Consensus 44 lDTQmyGlSreIdFA-----Vrlgli~~~~Gk~ll~~LE~ 78 (90)
T PF07408_consen 44 LDTQMYGLSREIDFA-----VRLGLISEEEGKQLLSELER 78 (90)
T ss_dssp HHHHHHHHHHHHHHH-----HHTTSS-HHHHHHHHHHHHH
T ss_pred HHhHHhchhHHHHHH-----HHhCCccHHHHHHHHHHHHH
Confidence 456666666666555 68899999999999998876
No 48
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18. It catalyses the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids []. Acyl-CoA oxidase is a homodimer and the polypeptide chain of the subunit is folded into the N-terminal alpha-domain, beta-domain, and C-terminal alpha-domain []. Functional differences between the peroxisomal acyl-CoA oxidases and the mitochondrial acyl-CoA dehydrogenases are attributed to structural differences in the FAD environments []. Experimental data indicate that, in the pumpkin, the expression pattern of ACOX is very similar to that of the glyoxysomal enzyme 3-ketoacyl-CoA thiolase []. In humans, defects in ACOX1 are the cause of pseudoneonatal adrenoleukodystrophy, also known as peroxisomal acyl-CoA oxidase deficiency. Pseudo-NALD is a peroxisomal single-enzyme disorder. Clinical features include mental retardation, leukodystrophy, seizures, mild hepatomegaly and hearing deficit. Pseudo-NALD is characterised by increased plasma levels of very-long chain fatty acids due to a decrease in, or absence of, peroxisome acyl-CoA oxidase activity, despite the peroxisomes being intact and functioning. This entry represents the Acyl-CoA oxidase C-terminal.; GO: 0003997 acyl-CoA oxidase activity, 0006635 fatty acid beta-oxidation, 0055114 oxidation-reduction process, 0005777 peroxisome; PDB: 2FON_A 1IS2_B 2DDH_A 1W07_B.
Probab=49.59 E-value=66 Score=25.40 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccc---------------cCCCCchhHHHHHHHHHHh
Q psy10234 49 IAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIE---------------LKTELEDIHMNIESELIKR 105 (167)
Q Consensus 49 ~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~---------------~~~~~EDiH~~iE~~L~e~ 105 (167)
.-|.-.+.+.|+||.+.+..|.+.+.++..++.+..+. +...+.|||.++-.+....
T Consensus 94 ~~~~g~fl~~g~ls~~~~~~l~~~i~~l~~~lrp~av~LVDAF~~~D~~L~S~iG~~DG~vYe~l~~~a~~~ 165 (187)
T PF01756_consen 94 EENAGDFLEHGYLSPEQIKALRKAIEELCAELRPNAVALVDAFDFPDFFLNSPIGRYDGDVYEALFEWAKKS 165 (187)
T ss_dssp HHTHHHHHHTTSS-HHHHHHHHHHHHHHHHHHGGGHHHHHHTT---HHHHT-STT-TT--HHHHHHHHHHHS
T ss_pred HHHHHHHHhCCcCCHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHcChhccccchHHHHHHHHHHHC
Confidence 45667788999999999999999999999888876652 3334677777776665444
No 49
>PRK13666 hypothetical protein; Provisional
Probab=40.26 E-value=60 Score=23.87 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=26.9
Q ss_pred HHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy10234 36 VDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIE 77 (167)
Q Consensus 36 ~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~ 77 (167)
.|..+|...-.++-| .+.|+|+.+++++|+..|++=.
T Consensus 46 lDTQmfGlSreVdFA-----vrlgli~~~~Gk~ll~~LE~~L 82 (92)
T PRK13666 46 LDTQMFGLSREVDFA-----VRLGLIDEEEGKQLLSRLEREL 82 (92)
T ss_pred HHHHHhhhHHHHHHH-----HHhccccHHHHHHHHHHHHHHH
Confidence 355566555555554 5789999999999998887633
No 50
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=34.88 E-value=2.3e+02 Score=22.40 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhc---CccccCCCCchhHHHHHHHHHHhhc
Q psy10234 49 IAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRE---NRIELKTELEDIHMNIESELIKRIE 107 (167)
Q Consensus 49 ~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~---g~~~~~~~~EDiH~~iE~~L~e~iG 107 (167)
.+.+..|.+.| +|++.|+.|..++..+..+--. ..+.-..+.|..-..++..+.+.=+
T Consensus 5 ~~~v~~Le~~G-ft~~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~ 65 (177)
T PF07798_consen 5 HKFVKRLEAAG-FTEEQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRS 65 (177)
T ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999 5999999999999988765211 1222233344444444444444433
No 51
>PF14164 YqzH: YqzH-like protein
Probab=32.44 E-value=1.2e+02 Score=20.81 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=27.9
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHHhcCccccCCCCchhHHHHHHHHH
Q psy10234 57 SCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELI 103 (167)
Q Consensus 57 ~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~~~EDiH~~iE~~L~ 103 (167)
++-=+|+.|-+.+.+.+.....+ ...+|+|..||-.+=
T Consensus 22 ~~~pls~~E~~~L~~~i~~~~~~---------~~~~Dl~eiVeDvVY 59 (64)
T PF14164_consen 22 ECMPLSDEEWEELCKHIQERKNE---------EPDEDLHEIVEDVVY 59 (64)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhc---------CCCchHHHHHHHHHH
Confidence 34457888888888888776654 235899999997653
No 52
>COG2306 Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]
Probab=32.04 E-value=1e+02 Score=25.36 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=30.7
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCcccc
Q psy10234 52 VTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIEL 87 (167)
Q Consensus 52 v~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~ 87 (167)
..|-.+.|+||++.+.+.....+.|..+...|.|.+
T Consensus 128 L~~Al~~GlIT~~qf~~Ay~~a~aVe~elr~g~~~~ 163 (183)
T COG2306 128 LEDALRYGLITPEQFEKAYRTANAVEAELRNGKFPP 163 (183)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 345578899999999999999999999988887654
No 53
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=31.04 E-value=78 Score=27.90 Aligned_cols=46 Identities=9% Similarity=0.043 Sum_probs=29.6
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH-HHHhcCccccCCCCchhHH
Q psy10234 51 HVTMLHSCGLVKGEEKDIIIKTLNEIE-VDIRENRIELKTELEDIHM 96 (167)
Q Consensus 51 Hv~mL~~~GIIs~eea~~Il~~L~~i~-~~~~~g~~~~~~~~EDiH~ 96 (167)
.-..|.++|++|+++.++|.+.+.+.. +.+..-.=...|..++++.
T Consensus 290 ~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~~~~~~ 336 (341)
T CHL00149 290 LKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPEPNISDLKK 336 (341)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHh
Confidence 345688999999999999988876643 3222211123566666643
No 54
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=29.70 E-value=54 Score=24.97 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=18.4
Q ss_pred HHHHcCCCCHHHHHHHHHHHH
Q psy10234 54 MLHSCGLVKGEEKDIIIKTLN 74 (167)
Q Consensus 54 mL~~~GIIs~eea~~Il~~L~ 74 (167)
-+.++|+||++++++|.+...
T Consensus 3 ~w~~~GlI~~~q~~~i~~~~~ 23 (145)
T PF09925_consen 3 RWVEQGLITPEQAEAILAFYG 23 (145)
T ss_pred hHHHCCCCCHHHHHHHHHHhh
Confidence 468999999999999988776
No 55
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=29.69 E-value=72 Score=27.63 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHHHhcCccccCCCCchhHH
Q psy10234 49 IAHVTMLHSCGLVKGEEKDIIIKTLNEI-EVDIRENRIELKTELEDIHM 96 (167)
Q Consensus 49 ~AHv~mL~~~GIIs~eea~~Il~~L~~i-~~~~~~g~~~~~~~~EDiH~ 96 (167)
.-.-.-|.++|++++++.++|.+...+- .+.+..-.-...|..++++.
T Consensus 263 ~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p~p~~~~~~~ 311 (315)
T TIGR03182 263 EKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPEPPVEELYT 311 (315)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHh
Confidence 3445568999999999999998776663 33222111123566677643
No 56
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=29.32 E-value=1.3e+02 Score=21.44 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=19.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q psy10234 58 CGLVKGEEKDIIIKTLNEIEVD 79 (167)
Q Consensus 58 ~GIIs~eea~~Il~~L~~i~~~ 79 (167)
+.+.|+++-.++.+-|+++.+.
T Consensus 9 ~viv~~~d~~~i~~rLD~iEeK 30 (77)
T PRK01026 9 QVVVDPKDFKEIQKRLDEIEEK 30 (77)
T ss_pred eeecCHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999886
No 57
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=27.97 E-value=5.1e+02 Score=24.27 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=56.4
Q ss_pred HHHHhh-CHHHH--HHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCCCC----chhHH---
Q psy10234 27 VEQFTE-SITVD--RRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTEL----EDIHM--- 96 (167)
Q Consensus 27 ~~~f~~-s~~~D--~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~~~----EDiH~--- 96 (167)
++.|.. ....+ ..+......+-+|-+....+-|.|+++-+..|+++-++|..----+.|..|+=. -.+++
T Consensus 30 ~eNF~Is~~~~~~~p~~i~a~~~VKKAaAlaN~elg~l~~~~~~aIv~ACDeil~Gk~~dqFvvD~~QGGAGTS~NMN~N 109 (471)
T COG1027 30 VENFPISGLKISDVPEFIRAMAMVKKAAALANKELGALPKEIADAIVKACDEILDGKCHDQFVVDVYQGGAGTSTNMNAN 109 (471)
T ss_pred HhcCCCcCCcccccHHHHHHHHHHHHHHHHhhhhhCCCCHHHHHHHHHHHHHHHcCccccccceeccccCCCccccccHH
Confidence 566642 23333 677788888999999999999999999999999999999873122445444321 12222
Q ss_pred -HHHHHHHHhhc-hhhh
Q psy10234 97 -NIESELIKRIE-FQYY 111 (167)
Q Consensus 97 -~iE~~L~e~iG-~~gg 111 (167)
-|=..=.|..| +-|-
T Consensus 110 EVIAN~AlE~lG~~KGe 126 (471)
T COG1027 110 EVIANRALELLGHEKGE 126 (471)
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 34444556677 4444
No 58
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=27.65 E-value=1.7e+02 Score=19.09 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=18.4
Q ss_pred hHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHH
Q psy10234 40 LYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIK 71 (167)
Q Consensus 40 L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~ 71 (167)
+.+.-..-.+.=-.-..+.|++|+++.++|++
T Consensus 17 iAk~A~~~g~svre~v~~~g~lt~ee~d~ll~ 48 (55)
T PF10415_consen 17 IAKEALAEGRSVREVVLEEGLLTEEELDELLD 48 (55)
T ss_dssp HHHHHHHHT--HHHHHHHTTSS-HHHHHHHTS
T ss_pred HHHHHHHcCCCHHHHHHHcCCCCHHHHHHHcC
Confidence 44433333333333456889999999998875
No 59
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=23.95 E-value=1e+02 Score=22.00 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=19.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q psy10234 58 CGLVKGEEKDIIIKTLNEIEVD 79 (167)
Q Consensus 58 ~GIIs~eea~~Il~~L~~i~~~ 79 (167)
...|++++|+++++.|+++..+
T Consensus 57 i~~ideeeA~etl~~l~el~~~ 78 (82)
T PRK10413 57 MSIIDEDEAKATLDALRQMEYD 78 (82)
T ss_pred hhhCCHHHHHHHHHHHHHHHhh
Confidence 3579999999999999999765
No 60
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=23.40 E-value=1.2e+02 Score=27.04 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=28.2
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHH-HHHHHhcCccccCCCCchhHH
Q psy10234 52 VTMLHSCGLVKGEEKDIIIKTLNE-IEVDIRENRIELKTELEDIHM 96 (167)
Q Consensus 52 v~mL~~~GIIs~eea~~Il~~L~~-i~~~~~~g~~~~~~~~EDiH~ 96 (167)
-.-|.+.|++|+++.++|.+...+ +.+.+....-...|..++++.
T Consensus 293 ~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~~~p~P~~~~~~~ 338 (362)
T PLN02269 293 RKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKESPMPDPSELFT 338 (362)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHh
Confidence 456899999999999999877655 433332211123455555543
No 61
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=23.12 E-value=2e+02 Score=20.12 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy10234 60 LVKGEEKDIIIKTLNEIEVD 79 (167)
Q Consensus 60 IIs~eea~~Il~~L~~i~~~ 79 (167)
++++++..++.+-|++|.+.
T Consensus 8 iv~~~~~~~i~~rLd~iEeK 27 (70)
T PF04210_consen 8 IVDPDDFNEIMKRLDEIEEK 27 (70)
T ss_pred eeCHHHHHHHHHHHHHHHHH
Confidence 56899999999999999886
No 62
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=22.97 E-value=1.1e+02 Score=26.84 Aligned_cols=55 Identities=13% Similarity=0.127 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHH-HHHHhcCccccCCC----CchhHHHHHHHHHH
Q psy10234 50 AHVTMLHSCGLVKGEEKDIIIKTLNEI-EVDIRENRIELKTE----LEDIHMNIESELIK 104 (167)
Q Consensus 50 AHv~mL~~~GIIs~eea~~Il~~L~~i-~~~~~~g~~~~~~~----~EDiH~~iE~~L~e 104 (167)
-...-|.+.|++++++.++|.+...+- .+.+..-.-...|+ ++|||.....+|.+
T Consensus 277 ~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~a~~~p~P~~~~~~~~vy~~~~~~~~~ 336 (341)
T TIGR03181 277 RLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALALPPPPVDDIFDHVYAELPPELEE 336 (341)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcccCCCHHHHH
Confidence 344678999999999999998776653 33222211123344 45555544444443
No 63
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=22.95 E-value=4e+02 Score=24.16 Aligned_cols=62 Identities=19% Similarity=0.316 Sum_probs=41.2
Q ss_pred hhhhHHHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHh--cCccccCCCCchhHHHHHHHHHHhhc
Q psy10234 45 IEGSIAHVTMLHSCGLVKGEEKDII---IKTLNEIEVDIR--ENRIELKTELEDIHMNIESELIKRIE 107 (167)
Q Consensus 45 I~~s~AHv~mL~~~GIIs~eea~~I---l~~L~~i~~~~~--~g~~~~~~~~EDiH~~iE~~L~e~iG 107 (167)
..|-..-.....+||+||.+|.+.= +..=.++++.-+ .++ .+.|.+.|.-.-+=..|.+.+.
T Consensus 120 ~~G~~~aLeAiidq~~i~~~e~~rq~~~l~~at~~ek~~g~a~~~-yi~p~~~d~~~~~~~~l~~~~~ 186 (352)
T TIGR03282 120 TEGVIATLESAAEAGIIDEDEVERQKELLKKATEVEKKRGMAKRE-YIEPSYGDDKHKVAKRLVDLIQ 186 (352)
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHhchhhcc-ccCCCCCccHHHHHHHHHHHHh
Confidence 4555667788899999999998764 333334444322 222 3578888887777777777653
No 64
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=22.93 E-value=1.7e+02 Score=20.87 Aligned_cols=30 Identities=13% Similarity=0.359 Sum_probs=23.9
Q ss_pred HHHhhhhhHHHHHHHHHcCCCCHHHHHHHHH
Q psy10234 41 YKEDIEGSIAHVTMLHSCGLVKGEEKDIIIK 71 (167)
Q Consensus 41 ~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~ 71 (167)
+-.|+.++. +.--|..+||+|.++.+.|..
T Consensus 12 L~~~l~~~~-l~d~L~q~~VLt~~d~EeI~~ 41 (86)
T cd08785 12 LTRKINPSR-LTPYLRQCKVLDEQDEEEVLS 41 (86)
T ss_pred HHHHhhHHH-HHHHHHhcCCCCHHHHHHHhC
Confidence 335566666 777899999999999998875
No 65
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=22.47 E-value=1.2e+02 Score=27.44 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=22.0
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHH
Q psy10234 53 TMLHSCGLVKGEEKDIIIKTLNEIEVD 79 (167)
Q Consensus 53 ~mL~~~GIIs~eea~~Il~~L~~i~~~ 79 (167)
.-|.+.|++|+++-++|.+...+.-++
T Consensus 295 ~~L~~~g~~see~~~~i~~e~~~~V~e 321 (358)
T COG1071 295 KYLIEAGILSEEELEAIEAEAKAEVDE 321 (358)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 357899999999999999887775444
No 66
>COG0298 HypC Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=22.45 E-value=1.2e+02 Score=21.85 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q psy10234 59 GLVKGEEKDIIIKTLNEIEVDI 80 (167)
Q Consensus 59 GIIs~eea~~Il~~L~~i~~~~ 80 (167)
.+|++++|+..+++|+++.+..
T Consensus 54 ~~idEeeAketle~l~e~~~~~ 75 (82)
T COG0298 54 SKIDEEEAKETLEALQEMFDAE 75 (82)
T ss_pred eecCHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999998763
No 67
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=22.41 E-value=2.6e+02 Score=19.05 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=32.2
Q ss_pred hHHHHHHHHHcCCCCHHHHHHHHH----HHHHHHHHHhcCccccCCCCchhHHHHH
Q psy10234 48 SIAHVTMLHSCGLVKGEEKDIIIK----TLNEIEVDIRENRIELKTELEDIHMNIE 99 (167)
Q Consensus 48 s~AHv~mL~~~GIIs~eea~~Il~----~L~~i~~~~~~g~~~~~~~~EDiH~~iE 99 (167)
-.+.+..|.++|-||...|++|.. .+.++... -.++++-+.||+-.-+|
T Consensus 22 r~~~Ai~lY~~g~iS~gkAAelag~s~~eF~~~L~~---~gI~~~~~~eel~~dle 74 (76)
T PF03683_consen 22 REELAIKLYEEGKISLGKAAELAGMSRWEFLELLKE---RGIPINYDEEELEEDLE 74 (76)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHH---CCCCCCCCHHHHHHHHH
Confidence 347788999999999999999863 23333332 33555666666644333
No 68
>KOG3520|consensus
Probab=22.27 E-value=3.5e+02 Score=28.31 Aligned_cols=41 Identities=22% Similarity=0.177 Sum_probs=32.4
Q ss_pred HHhHHHhhhhhHHHHHHH-----------HHcCCCCHHHHHHHHHHHHHHHH
Q psy10234 38 RRLYKEDIEGSIAHVTML-----------HSCGLVKGEEKDIIIKTLNEIEV 78 (167)
Q Consensus 38 ~~L~~~dI~~s~AHv~mL-----------~~~GIIs~eea~~Il~~L~~i~~ 78 (167)
.+....-+..-.+||.+| .+.|+++.++...|...|+++..
T Consensus 392 QEvI~EL~~TE~~HVRTLKIl~~vF~q~m~~e~~~~~~~l~~LFP~LdeL~e 443 (1167)
T KOG3520|consen 392 QEVIYELFQTERHHVRTLKILDRVFYQPMMEELLFPQEELNKLFPCLDELIE 443 (1167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHhcccHHHHHH
Confidence 445555677888888887 58899999999999888887754
No 69
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=22.18 E-value=2.2e+02 Score=19.92 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy10234 60 LVKGEEKDIIIKTLNEIEVD 79 (167)
Q Consensus 60 IIs~eea~~Il~~L~~i~~~ 79 (167)
+.++++-.++.+-|+++.+.
T Consensus 8 ~v~~~d~~~i~~rLd~iEeK 27 (70)
T TIGR01149 8 FVEPDEFNEVMKRLDEIEEK 27 (70)
T ss_pred ecCHHHHHHHHHHHHHHHHH
Confidence 57889999999999999886
No 70
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=22.05 E-value=1.4e+02 Score=20.97 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q psy10234 58 CGLVKGEEKDIIIKTLNEIEVD 79 (167)
Q Consensus 58 ~GIIs~eea~~Il~~L~~i~~~ 79 (167)
...|++++|+.+++.|+++...
T Consensus 50 i~~ide~eA~e~l~~l~el~~~ 71 (76)
T TIGR00074 50 ISVLDEEEARETLDALQELFDA 71 (76)
T ss_pred hhhCCHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999875
No 71
>KOG2685|consensus
Probab=21.65 E-value=3.7e+02 Score=24.92 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhhhhccchhhhh
Q psy10234 139 LIKRIESRVMSRMRRGNAACCRL 161 (167)
Q Consensus 139 l~~~~e~~~~~~~~~~~~~~~~~ 161 (167)
=+++|+++.+.|-+|.|-.-||=
T Consensus 321 pLKVAqTRle~Rt~RPnvELCrD 343 (421)
T KOG2685|consen 321 PLKVAQTRLENRTYRPNVELCRD 343 (421)
T ss_pred cHHHHHHHHHHcccCCchHHHHh
Confidence 37899999999999999999983
No 72
>PF10335 DUF294_C: Putative nucleotidyltransferase substrate binding domain; InterPro: IPR018821 This entry is found associated with presumed nucleotidyltransferase domains and seems to be distantly related to other helical substrate binding domains.
Probab=21.50 E-value=1.7e+02 Score=22.29 Aligned_cols=32 Identities=9% Similarity=0.284 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy10234 47 GSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEV 78 (167)
Q Consensus 47 ~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~ 78 (167)
....=...|.+.|+++++++..+..+.+-+..
T Consensus 63 ~T~eRl~~L~~~g~l~~~~~~~l~~A~~~l~~ 94 (145)
T PF10335_consen 63 STLERLEALAEAGVLSPDDAEDLIEAFEFLLG 94 (145)
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 33455667888888888888888887766543
No 73
>PF07812 TfuA: TfuA-like protein; InterPro: IPR012924 This domain consists of a group of sequences that are similar to the core of TfuA protein (Q52872 from SWISSPROT). This protein is involved in the production of trifolitoxin (TFX), a gene-encoded, post-translationally modified peptide antibiotic []. The role of TfuA in TFX synthesis is unknown, and it may be involved in other cellular processes [].
Probab=20.80 E-value=1.6e+02 Score=22.62 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy10234 49 IAHVTMLHSCGLVKGEEKDIIIKTLNEI 76 (167)
Q Consensus 49 ~AHv~mL~~~GIIs~eea~~Il~~L~~i 76 (167)
.+-+....+.|+|++++++.|++.-..+
T Consensus 87 R~tl~~a~~~g~i~~~~~~~l~~~ak~l 114 (120)
T PF07812_consen 87 RATLRAAVRAGIISEEEAAALLAAAKSL 114 (120)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 3445567899999999999999887665
No 74
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=20.79 E-value=1.2e+02 Score=27.98 Aligned_cols=27 Identities=26% Similarity=0.275 Sum_probs=21.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy10234 51 HVTMLHSCGLVKGEEKDIIIKTLNEIE 77 (167)
Q Consensus 51 Hv~mL~~~GIIs~eea~~Il~~L~~i~ 77 (167)
.-.-|.+.|++|+++.++|.+..++..
T Consensus 356 ~~~~L~~~gi~te~e~~~i~~~~~~~v 382 (433)
T PLN02374 356 LKKYLIENGLATEAELKAIEKKIDEVV 382 (433)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 346689999999999999988876643
No 75
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=20.39 E-value=1.6e+02 Score=18.41 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy10234 46 EGSIAHVTMLHSCGLVKGEEKDIIIKTL 73 (167)
Q Consensus 46 ~~s~AHv~mL~~~GIIs~eea~~Il~~L 73 (167)
.|++.=.....++|+|+ +++..++.|
T Consensus 3 ~GTlGiL~~Ak~~GlI~--~~~~~l~~l 28 (48)
T PF11848_consen 3 TGTLGILLLAKRRGLIS--EVKPLLDRL 28 (48)
T ss_pred eehHHHHHHHHHcCChh--hHHHHHHHH
Confidence 35555567788999999 444444444
Done!