RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10234
(167 letters)
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 136 bits (346), Expect = 7e-39
Identities = 47/98 (47%), Positives = 63/98 (64%)
Query: 9 TMNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDI 68
M+ KLW G F E ++ VE+FT SI+ D+RL +EDI GSIAH ML G++ EE +
Sbjct: 1 MMSNKLWGGRFSEGPDELVERFTASISFDKRLAEEDIAGSIAHARMLAKQGILSEEEAEK 60
Query: 69 IIKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRI 106
I+ L+EI +I + E ELEDIHM IE+ L +RI
Sbjct: 61 ILAGLDEILEEIEAGKFEFSPELEDIHMAIEARLTERI 98
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and
metabolism].
Length = 459
Score = 115 bits (290), Expect = 7e-31
Identities = 41/97 (42%), Positives = 59/97 (60%)
Query: 10 MNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDII 69
M+ KLW G F + V++F SI+ D+RL + DI GSIAH ML G++ EE I
Sbjct: 1 MSNKLWGGRFSGGPDPLVKEFNASISFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKI 60
Query: 70 IKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRI 106
++ L E+ +IR + EL + ED+H IE+ LI+RI
Sbjct: 61 LEGLEELLEEIRAGKFELDPDDEDVHTAIEARLIERI 97
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase.
Length = 474
Score = 107 bits (270), Expect = 5e-28
Identities = 46/106 (43%), Positives = 66/106 (62%)
Query: 1 MSDNIATETMNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGL 60
MS + KLW G F+E + VE+F ESI+ D+RLYKEDI GS AH +ML G+
Sbjct: 5 MSASEEEAAKEKKLWGGRFEEGVTPAVEKFNESISFDKRLYKEDIMGSKAHASMLAKQGI 64
Query: 61 VKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRI 106
+ E++D I+ L+EIE +I + E + + ED+HMN E+ L + I
Sbjct: 65 ITDEDRDSILDGLDEIEKEIEAGKFEWRPDREDVHMNNEARLTELI 110
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens [Amino acid
biosynthesis, Glutamate family].
Length = 455
Score = 103 bits (259), Expect = 1e-26
Identities = 41/93 (44%), Positives = 56/93 (60%)
Query: 14 LWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTL 73
LW G F ++ V +F S++ D+ L + DIEGSIAH ML G++ EE II+ L
Sbjct: 1 LWGGRFTGGMDPRVAKFNASLSFDKELAEYDIEGSIAHTKMLKKAGILTEEEAAKIIEGL 60
Query: 74 NEIEVDIRENRIELKTELEDIHMNIESELIKRI 106
NE++ + RE L + EDIHM IE ELI R+
Sbjct: 61 NELKEEGREGPFILDPDDEDIHMAIERELIDRV 93
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
(argininosuccinase, ASAL). This group contains ASAL and
related proteins. It is a member of the Lyase class I
family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASAL is a cytosolic enzyme which catalyzes the
reversible breakdown of argininosuccinate to arginine
and fumarate during arginine biosynthesis. In ureotelic
species ASAL also catalyzes a reaction involved in the
production of urea. Included in this group are the major
soluble avian eye lens proteins from duck, delta 1 and
delta 2 crystallin. Of these two isoforms only delta 2
has retained ASAL activity. These crystallins may have
evolved by, gene recruitment of ASAL followed by gene
duplication. In humans, mutations in ASAL result in the
autosomal recessive disorder argininosuccinic aciduria.
Length = 435
Score = 98.4 bits (246), Expect = 8e-25
Identities = 37/74 (50%), Positives = 46/74 (62%)
Query: 33 SITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELE 92
SI+ DRRL++EDI GSIAH ML G++ EE I+ L +I +I EL E E
Sbjct: 1 SISFDRRLFEEDIAGSIAHAVMLAEQGILTEEEAAKILAGLAKIRAEIEAGAFELDPEDE 60
Query: 93 DIHMNIESELIKRI 106
DIHM IE LI+RI
Sbjct: 61 DIHMAIERRLIERI 74
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
Length = 455
Score = 71.9 bits (177), Expect = 2e-15
Identities = 32/96 (33%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 12 MKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIK 71
M LW G F + ++ +QF +S+ D RL ++DI GS+A L + G++ +E+ + +
Sbjct: 1 MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTADEQQQLEE 60
Query: 72 TLNEIEVDIREN-RIELKTELEDIHMNIESELIKRI 106
LNE+ ++R N + L ++ EDIH +E +LI ++
Sbjct: 61 ALNELLEEVRANPQQILASDAEDIHSWVEGKLIDKV 96
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
lyase/N-acetylglutamate synthase; Provisional.
Length = 614
Score = 61.0 bits (148), Expect = 2e-11
Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 12 MKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIK 71
M LW G F + + +QF +S+ D RL ++DI GSIA L S G++ EE+ +
Sbjct: 1 MALWGGRFSQAADTRFKQFNDSLRFDYRLAEQDIVGSIAWSKALLSVGVLSEEEQQKLEL 60
Query: 72 TLNEIEVDIRENRIE-LKTELEDIHMNIESELIKRI 106
LNE+++++ E+ + L ++ EDIH +E +LI ++
Sbjct: 61 ALNELKLEVMEDPEQILLSDAEDIHSWVEQQLIGKV 96
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 60.2 bits (147), Expect = 3e-11
Identities = 17/66 (25%), Positives = 30/66 (45%)
Query: 41 YKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIES 100
+ D++ AH L GL+ E + I+ L+EI I +++E + M +E
Sbjct: 1 IRADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIAADQVEQEGSGTHDVMAVEE 60
Query: 101 ELIKRI 106
L +R
Sbjct: 61 VLAERA 66
>gnl|CDD|235791 PRK06389, PRK06389, argininosuccinate lyase; Provisional.
Length = 434
Score = 47.6 bits (113), Expect = 7e-07
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 12 MKLWKGCFKENLN-KFVEQFTE-SITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDII 69
MK+W G E L F + + I D+ L K +I +A+ L L+ + +
Sbjct: 1 MKIWSGGAGEELENDFYDNIVKDDIDADKNLIKYEIINLLAYHVALAQRRLITEKAPKCV 60
Query: 70 IKTLNEIEVDIRENRIELKTELEDIHMNIESELIKR 105
I L +DI +N IE+ +LED+H IE+ +I+R
Sbjct: 61 INAL----IDIYKNGIEIDLDLEDVHTAIENFVIRR 92
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase.
Length = 312
Score = 35.0 bits (81), Expect = 0.010
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 25 KFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENR 84
+ FT+ + RL +EDI+G A ++ EE IIK L+E+ + + +
Sbjct: 9 ALMGIFTDRSRFNFRLSEEDIKGLAALKKAAAKANVLLKEEAAAIIKALDEVAEEGKADD 68
Query: 85 I-ELKTELEDIH----MNIESELIKRIEFQY 110
LK E MN+ E+I + Q
Sbjct: 69 AFPLKVIQEGSGTAVNMNLN-EVIGELLGQL 98
>gnl|CDD|143399 cd07080, ALDH_Acyl-CoA-Red_LuxC, Acyl-CoA reductase LuxC. Acyl-CoA
reductase, LuxC, (EC=1.2.1.50) is the fatty acid
reductase enzyme responsible for synthesis of the
aldehyde substrate for the luminescent reaction
catalyzed by luciferase. The fatty acid reductase, a
luminescence-specific, multienzyme complex (LuxCDE),
reduces myristic acid to generate the long chain fatty
aldehyde required for the luciferase-catalyzed reaction
resulting in the emission of blue-green light.
Mutational studies of conserved cysteines of LuxC
revealed that the cysteine which aligns with the
catalytic cysteine conserved throughout the ALDH
superfamily is the LuxC acylation site. This CD is
composed of mainly bacterial sequences but also includes
a few archaeal sequences similar to the Methanospirillum
hungateiacyl acyl-CoA reductase RfbN.
Length = 422
Score = 31.1 bits (71), Expect = 0.22
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 11/72 (15%)
Query: 72 TLNEIEVDI----------RENRIELKTELEDIHMNIESELIKRIEFQYYFLLLQYSELS 121
+ EI VD + + + E + SE + R + L + L
Sbjct: 25 PVEEI-VDFLDRAGKRLLDPDYPLRQQAERLLPTVTGYSEEMLREGLKRLMALFRRENLE 83
Query: 122 IELKTELEDIHM 133
L+ EL +
Sbjct: 84 RILERELGSPGI 95
>gnl|CDD|132471 TIGR03430, trp_dimet_allyl, tryptophan dimethylallyltransferase.
Members of this family are the enzyme tryptophan
dimethylallyltransferase (EC 2.5.1.34), a distinct clade
within a larger group of aromatic prenyltransferases
that may act on on trp-containing cyclic dipeptides, or
on tyrosine or other related substrates. Tryptophan
dimethylallyltransferase and related enzymes typically
are of fungal origin are involved in the biosynthesis of
secondary metabolites such as ergot alkaloids.
Length = 419
Score = 28.7 bits (64), Expect = 1.7
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 39 RLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKT 89
+K+++ + L S LV + IKT N++ +D++ +R LK
Sbjct: 132 SYFKDELTLNATESAYLASNDLVNEQ-----IKTQNKLALDLKGDRFALKV 177
>gnl|CDD|163628 cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins,
C-terminal metallophosphatase domain. YkuE is an
uncharacterized Bacillus subtilis protein with a
C-terminal metallophosphatase domain and an N-terminal
twin-arginine (RR) motif. An RR-signal peptide derived
from the Bacillus subtilis YkuE protein can direct
Tat-dependent secretion of agarase in Streptomyces
lividans. This is an indication that YkuE is
transported by the Bacillus subtilis Tat (Twin-arginine
translocation) pathway machinery. YkuE belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 223
Score = 28.0 bits (63), Expect = 1.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 49 IAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDI 80
IAH++ LH V E + +++ +N ++ D+
Sbjct: 4 IAHLSDLHLGPFVSRERLERLVEKINALKPDL 35
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase.
Length = 455
Score = 27.9 bits (62), Expect = 2.5
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 67 DIIIKTLNEIEVDIRENRIELKTELEDIHMNIESE---LIKRIEFQYYFLLLQ------Y 117
+ + K + E E I + +++ ELE + E L KR+ + L+
Sbjct: 364 ERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFL 423
Query: 118 SELSIELKTELEDIHMNIES 137
ELS E K LE + M
Sbjct: 424 KELSKEEKELLEKLKMEASE 443
>gnl|CDD|235443 PRK05395, PRK05395, 3-dehydroquinate dehydratase; Provisional.
Length = 146
Score = 27.3 bits (62), Expect = 2.5
Identities = 17/36 (47%), Positives = 19/36 (52%)
Query: 71 KTLNEIEVDIRENRIELKTELEDIHMNIESELIKRI 106
TL +IE + E EL ELE N E ELI RI
Sbjct: 26 TTLADIEALLEEEAAELGVELEFFQSNHEGELIDRI 61
>gnl|CDD|130160 TIGR01088, aroQ, 3-dehydroquinate dehydratase, type II. This model
specifies the type II enzyme. The type I enzyme, often
found as part of a multifunctional protein, is described
by TIGR01093 [Amino acid biosynthesis, Aromatic amino
acid family].
Length = 141
Score = 27.3 bits (61), Expect = 2.8
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 72 TLNEIEVDIRENRIELKTELEDIHMNIESELIKRI---EFQYYFLLLQ---YSELSIELK 125
TL EI I +L ELE N E +LI +I E QY +++ + S+ L+
Sbjct: 25 TLEEIVEIIETFAAQLNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTHTSVALR 84
Query: 126 TELE 129
L
Sbjct: 85 DALA 88
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
Length = 502
Score = 27.3 bits (60), Expect = 4.3
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 50 AHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELIK 104
AH+ ML L+K EE I+ L ++E +I E ++ + ED+ +E + +
Sbjct: 47 AHIVMLTEENLMKKEEAKFILHALKKVE-EIPEEQLLYTEQHEDLFFLVEHLISQ 100
>gnl|CDD|180643 PRK06645, PRK06645, DNA polymerase III subunits gamma and tau;
Validated.
Length = 507
Score = 27.5 bits (61), Expect = 4.3
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 60 LVKGEEKDIIIKTLNEIEV-DIRENRIELKTELEDIHMNIESELIKRIEFQYYFLLLQYS 118
L K E DI LN E+ ++ +NR+E + + + S++ K+IE LL ++
Sbjct: 408 LYKNNEIDIYYFLLNHTELKNLSDNRLEFVS------LEVTSKIKKQIED----LLAAFT 457
Query: 119 ELSIELKTELEDIHMNIESELIKRIES 145
E+ E ++++LI +IE+
Sbjct: 458 NEKFEIIIIKEQNKQTLKNQLIGKIEA 484
>gnl|CDD|215038 PLN00040, PLN00040, Protein MAK16 homolog; Provisional.
Length = 233
Score = 27.0 bits (60), Expect = 4.8
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 61 VKGEEKDIIIKTLNEIEVDIRENRIELKTELE-DIHMNIESELIKRIEFQYYFLLLQYSE 119
+K EK + ++ RE R E K + + +IE EL++R++ Y + +
Sbjct: 127 LKTREKIVTTPR----KLLKRERRRESKAQKAAQLEKSIEKELLERLKSGTYGDIYNFPS 182
Query: 120 LSIELKTELEDIHMNIESE 138
S E+E++ E
Sbjct: 183 KSYNKVLEMEEVEEAEEEL 201
>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain. RanBPM
is a scaffolding protein and is important in regulating
cellular function in both the immune system and the
nervous system. This domain is at the C-terminus of the
proteins and is the binding domain for the CRA motif
(for CT11-RanBPM), which is comprised of approximately
100 amino acids at the C terminal of RanBPM. It was
found to be important for the interaction of RanBPM with
fragile X mental retardation protein (FMRP), but its
functional significance has yet to be determined. This
region contains CTLH and CRA domains annotated by SMART;
however, these may be a single domain, and it is
refereed to as a C-terminal to LisH motif.
Length = 144
Score = 26.4 bits (59), Expect = 4.9
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 69 IIKTLNEIEVDIRENRI--------ELKTELEDIHMNIESEL 102
+ K N+I + + E K EL I+ N+E EL
Sbjct: 1 VFKERNKIRESLLNGDLEEALEWCNENKPELLKINSNLEFEL 42
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 27.3 bits (61), Expect = 5.0
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 38 RRLYKEDIE-GSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIREN---RIELKTELED 93
R+L + I+ SI+ + +++ E +II + D+ EN + EL L+
Sbjct: 882 RQLQELKIDVKSISSLKLVNLE-----LESEIIELK-KSLSSDLIENLEFKTELIARLKK 935
Query: 94 IHMNIESELIKRIEFQYYFLLLQYSELSIELKTELEDIHMNIESELIKRIESR 146
+ NI+ E IE+ L + E+ +LK E+ ++ I E
Sbjct: 936 LLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGN 988
>gnl|CDD|181300 PRK08221, PRK08221, anaerobic sulfite reductase subunit B;
Provisional.
Length = 263
Score = 26.8 bits (60), Expect = 5.6
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
Query: 19 FKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEV 78
FKE+L ++ E+ +T+D +E G++ GLV ++ +K ++ ++V
Sbjct: 147 FKEDLKRWREKINLILTLDEG--EEGYRGNV---------GLVTKYIPELTLKDIDNMQV 195
>gnl|CDD|135998 PRK06673, PRK06673, DNA polymerase III subunit beta; Validated.
Length = 376
Score = 26.6 bits (58), Expect = 7.5
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 22 NLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIR 81
N N F+E+F S D ++ G+I V + ++K DI+IK+ NE + I+
Sbjct: 48 NSNIFIEKFIPSAIDDEQITTILQAGTIV-VPAKYFIEIIKKMPSDIVIKSKNEQTITIQ 106
Query: 82 ENRIEL 87
I L
Sbjct: 107 SGEITL 112
>gnl|CDD|227824 COG5537, IRR1, Cohesin [Cell division and chromosome partitioning].
Length = 740
Score = 26.8 bits (59), Expect = 7.6
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 19 FKENLNKFVEQFTESITVDRRLYKEDIEG--SIAHVTMLHSCGLVKGEEKDIIIKTLNEI 76
+ + +FVE+F + I ++ D SI + L G++ E I+ + +I
Sbjct: 347 HTDAIRRFVERFKDRI-LEFLRTDSDCVRICSIKSLCYLRILGVLSSSEILIVSSCMLDI 405
Query: 77 EVDIRENRIE 86
D REN +E
Sbjct: 406 IPDSRENIVE 415
>gnl|CDD|189894 pfam01220, DHquinase_II, Dehydroquinase class II.
Length = 140
Score = 25.8 bits (58), Expect = 8.0
Identities = 17/36 (47%), Positives = 19/36 (52%)
Query: 71 KTLNEIEVDIRENRIELKTELEDIHMNIESELIKRI 106
TL +IE +RE EL ELE N E ELI I
Sbjct: 25 TTLADIEARLRELAAELGVELEFFQSNHEGELIDWI 60
>gnl|CDD|223828 COG0757, AroQ, 3-dehydroquinate dehydratase II [Amino acid
transport and metabolism].
Length = 146
Score = 26.0 bits (58), Expect = 8.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 71 KTLNEIEVDIRENRIELKTELEDIHMNIESELIKRI 106
TL +IE D+ E +L E+E N E ELI I
Sbjct: 25 TTLEDIEADLEEEAAKLGVEVEFRQSNHEGELIDWI 60
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.374
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,357,002
Number of extensions: 794967
Number of successful extensions: 1047
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1025
Number of HSP's successfully gapped: 115
Length of query: 167
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 77
Effective length of database: 6,945,742
Effective search space: 534822134
Effective search space used: 534822134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)