RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10234
(167 letters)
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 139 bits (353), Expect = 3e-40
Identities = 35/97 (36%), Positives = 55/97 (56%)
Query: 10 MNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDII 69
M + W G F E + +F S+ DR L++ED+ + H MLH+ GL+ EE + I
Sbjct: 1 MAHRTWGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAI 60
Query: 70 IKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRI 106
+K L+ IE +I + ELED+HMN+E+ L + +
Sbjct: 61 LKGLDRIEEEIEAGTFPWREELEDVHMNLEARLTELV 97
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase;
2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 136 bits (345), Expect = 6e-39
Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 12 MKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIK 71
M LW G F + ++ +QF +S+ D RL ++DI GS+A L + G++ EE+ + +
Sbjct: 1 MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEE 60
Query: 72 TLNEIEVDIRENRIE-LKTELEDIHMNIESELIKRI 106
LN + D+R + L+++ EDIH +E +LI ++
Sbjct: 61 ALNVLLEDVRARPQQILESDAEDIHSWVEGKLIDKV 96
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 135 bits (343), Expect = 1e-38
Identities = 32/101 (31%), Positives = 51/101 (50%)
Query: 6 ATETMNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEE 65
A+E KLW G F + + +E+ SI D+RL + DI+GS+A+ L G++ E
Sbjct: 2 ASEARGDKLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTE 61
Query: 66 KDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRI 106
+ I+ L +I + + +K EDIH E L + I
Sbjct: 62 LEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELI 102
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.002
Identities = 19/139 (13%), Positives = 52/139 (37%), Gaps = 35/139 (25%)
Query: 34 ITVDRRLYKEDIEGSIAHVTMLH-SCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELE 92
T +++ + H+++ H S L E K +++K L+ +L E+
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQ------DLPREVL 323
Query: 93 DIH---MNIESELIK----RIEFQYYFLLLQYSELSIELKTELEDIHMNIESELIKR--- 142
+ ++I +E I+ + + + +L+ +++ L +E ++
Sbjct: 324 TTNPRRLSIIAESIRDGLATWD---NWKHVNCDKLTTIIESSLN----VLEPAEYRKMFD 376
Query: 143 ----------IESRVMSRM 151
I + ++S +
Sbjct: 377 RLSVFPPSAHIPTILLSLI 395
Score = 32.5 bits (73), Expect = 0.063
Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 34/149 (22%)
Query: 7 TETMNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEK 66
ET + +K+ L+ F + F ++ +D++ + + EE
Sbjct: 9 FETGEHQY---QYKDILSVFEDAFVDNFDC------KDVQDMPKSI--------LSKEEI 51
Query: 67 DIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQYYFLLLQYSELSIELKT 126
D II + + + L ++ + E++++ F L + Y L +KT
Sbjct: 52 DHIIMSKD------AVSGTLR---LFWTLLSKQEEMVQK--FVEEVLRINYKFLMSPIKT 100
Query: 127 ELEDIHMNIESELIKRIESRVMSRMRRGN 155
E M IE R R+ N
Sbjct: 101 EQRQPSMMTR----MYIEQR--DRLYNDN 123
Score = 26.4 bits (57), Expect = 5.9
Identities = 13/101 (12%), Positives = 30/101 (29%), Gaps = 24/101 (23%)
Query: 64 EEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQYYFLLLQYSE-LSI 122
+ +++ L ++ I N +I + I S + E + Y L +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI---QAELRRLLKSKPYENCLLV 249
Query: 123 ELKTELEDIHMNIESELIKRIESRVMSRMRRGNAACCRLLL 163
L ++ ++ C++LL
Sbjct: 250 -----LLNVQ---NAKAWNAFNLS------------CKILL 270
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP:
c.23.13.1
Length = 143
Score = 30.5 bits (70), Expect = 0.13
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 71 KTLNEIEVDIRENRIELKTELEDIHMNIESELIKRI 106
+TL +IE D+ + L +L N E +LI I
Sbjct: 25 QTLTDIETDLFQFAEALHIQLTFFQSNHEGDLIDAI 60
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic
amino acid biosynthesis, drug target, citrazinic acid, S
genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis}
PDB: 3n59_A*
Length = 172
Score = 30.7 bits (70), Expect = 0.15
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 72 TLNEIEVDIRENRIELKTELEDIHMNIESELIKRI 106
T +E+ I EL + + E++L+ I
Sbjct: 54 THDELVALIEREAAELGLKAVVRQSDSEAQLLDWI 88
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta
protein, lyase, aromatic amino acid biosynthesis; 1.5A
{Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB:
1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A*
3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Length = 146
Score = 30.1 bits (69), Expect = 0.18
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 72 TLNEIEVDIRENRIELKTELEDIHMNIESELIKRI 106
T +E+ I EL + + E++L+ I
Sbjct: 28 THDELVALIEREAAELGLKAVVRQSDSEAQLLDWI 62
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A
{Thermus thermophilus}
Length = 149
Score = 30.2 bits (69), Expect = 0.19
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 72 TLNEIEVDIRENRIELKTELEDIHMNIESELIKRI 106
TL E+E EL + N E +LI+ +
Sbjct: 25 TLEELEALCEAWGAELGLGVVFRQTNYEGQLIEWV 59
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino
acid biosynthesis, lyase; 1.7A {Actinobacillus
pleuropneumoniae} SCOP: c.23.13.1
Length = 154
Score = 29.8 bits (68), Expect = 0.22
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 71 KTLNEIEVDIRENRIELKTELEDIHMNIESELIKRI 106
+TL++IE ++++ EL+ N E LI RI
Sbjct: 26 QTLSDIEQHLQQSAQAQGYELDYFQANGEESLINRI 61
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid
biosynthesis, aromatic amino acid biosynthesis, lyase,
structural genomics; 1.65A {Yersinia pestis}
Length = 153
Score = 29.8 bits (68), Expect = 0.27
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 72 TLNEIEVDIRENRIELKTELEDIHMNIESELIKRI 106
TL EI + + L + N E LI I
Sbjct: 33 TLAEIVSQLEIQAQGMDVALSHLQSNAEHALIDSI 67
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase,
shikimate pathway, dodecameric quaternary structure;
HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1
PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Length = 156
Score = 29.8 bits (68), Expect = 0.28
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 72 TLNEIEVDIRENRIELKTELEDIHMNIESELIKRI 106
TL ++E + ++ N E EL+ I
Sbjct: 32 TLADVEALCVKAAAAHGGTVDFRQSNHEGELVDWI 66
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center
for structural genomics of infec diseases, csgid,
unknown function; 1.60A {Bifidobacterium longum}
Length = 151
Score = 29.4 bits (67), Expect = 0.30
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 72 TLNEIEVDIRENRIELKTELEDIHMNIESELIKRI 106
L+ + E +L E+E + E+E+++ +
Sbjct: 30 DLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWM 64
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.91
Identities = 2/12 (16%), Positives = 9/12 (75%)
Query: 136 ESELIKRIESRV 147
E + +K++++ +
Sbjct: 18 EKQALKKLQASL 29
Score = 27.6 bits (60), Expect = 1.5
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 7/34 (20%)
Query: 99 ESELIKRIEFQYYFLLLQY---SELSIELKTELE 129
E + +K+++ L L Y S ++ +K +E
Sbjct: 18 EKQALKKLQAS---LKL-YADDSAPALAIKATME 47
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Length = 167
Score = 27.2 bits (61), Expect = 2.0
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 71 KTLNEIEVDIRE--NRIELKTELEDIHMNIESELIKRI 106
+L++IE E +E+ N E +I RI
Sbjct: 39 TSLSDIEQAAIEQAKLKNNDSEVLVFQSNTEGFIIDRI 76
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 27.7 bits (61), Expect = 2.1
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 57 SCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNI 98
L+ GE K I+ ++ + V + + T +++
Sbjct: 342 KGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAYISK 383
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway,
aromatic amino acid biosynthesis, lyase, sulphonamide;
HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A*
2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Length = 176
Score = 26.8 bits (60), Expect = 2.9
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 72 TLNEIEVDIRE--NRIELKTELEDIHMNIESELIKRI 106
TL++I ++ + L ELE N E E+I +I
Sbjct: 35 TLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIIDKI 71
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I
two-component histidine kinase, phosphoprotein; HET:
ADP; 2.03A {Geobacillus stearothermophilus}
Length = 244
Score = 26.8 bits (60), Expect = 3.4
Identities = 4/38 (10%), Positives = 15/38 (39%)
Query: 67 DIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELIK 104
I + ++ + + ++++ L + E E +
Sbjct: 88 LEIERVIDILRPLANMSCVDIQATLAPFSVIGEREKFR 125
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 26.9 bits (59), Expect = 3.8
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 57 SCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNI 98
++ GE K ++I T+ I +E R + E + +
Sbjct: 342 LGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTST 383
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 26.5 bits (58), Expect = 4.6
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 57 SCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNI 98
+ E K+ + + E +E+R + + ++I
Sbjct: 362 KGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDI 403
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 26.5 bits (58), Expect = 5.6
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 63 GEEKDIIIKTLNEIEVDIRENRIELKTELEDIHM 96
GE K +I+ L + + + R E+ E+ M
Sbjct: 381 GELKKALIEVLQPLIAEHQARRKEVTDEIVKEFM 414
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.5 bits (55), Expect = 8.2
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 16/72 (22%)
Query: 74 NEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQYYFLLLQYSELSIELKTELEDIHM 133
E E IR+ R E + L+++ ++ + E + K +LE+ +
Sbjct: 82 QEPES-IRKWREEQRKRLQEL----DAASKVMEQ-----------EWREKAKKDLEEWNQ 125
Query: 134 NIESELIKRIES 145
++ K +
Sbjct: 126 RQSEQVEKNKIN 137
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric
regulation, ACT domain, transferase, amino acid
biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP:
c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Length = 449
Score = 25.7 bits (57), Expect = 9.3
Identities = 13/107 (12%), Positives = 26/107 (24%), Gaps = 19/107 (17%)
Query: 54 MLHSCGLVKGEEKDIII------KTLNE----IEVDIRENRIELKTELEDIHMNIESELI 103
M S +V + ++ N E R E + +I I L
Sbjct: 20 MNRSADIVLSDANVRLVVLSASAGITNLLVALAEGLEPGERFEKLDAIRNIQFAILERLR 79
Query: 104 KRIEFQYYFLLLQYSELSIELKTELEDIHMNIESELIKRIESRVMSR 150
+ E+ L + + + ++S
Sbjct: 80 YPNVIR--------EEIE-RLLENITVLAEAAALATSPALTDELVSH 117
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.374
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,467,177
Number of extensions: 143397
Number of successful extensions: 318
Number of sequences better than 10.0: 1
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 45
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.4 bits)