RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10234
(167 letters)
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 459
Score = 108 bits (271), Expect = 4e-29
Identities = 31/97 (31%), Positives = 50/97 (51%)
Query: 13 KLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKT 72
KLW G F ++ +E+F SI DR L++ D++GS A+ L GL+ E D I+
Sbjct: 2 KLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQILHG 61
Query: 73 LNEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQ 109
L+++ + + +L + EDIH E L + I
Sbjct: 62 LDKVAEEWAQGTFKLNSNDEDIHTANERRLKELIGAT 98
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Escherichia coli [TaxId: 562]}
Length = 455
Score = 103 bits (258), Expect = 3e-27
Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 14 LWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTL 73
LW G F + ++ +QF +S+ D RL ++DI GS+A L + G++ EE+ + + L
Sbjct: 1 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEAL 60
Query: 74 NEIEVDIRENRIE-LKTELEDIHMNIESELIKR 105
N + D+R + L+++ EDIH +E +LI +
Sbjct: 61 NVLLEDVRARPQQILESDAEDIHSWVEGKLIDK 93
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Domestic duck (Anas platyrhynchos), delta-crystallin
[TaxId: 8839]}
Length = 449
Score = 97.7 bits (242), Expect = 4e-25
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 24 NKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIREN 83
+ +E+ SI D+RL + DI+GS+A+ L G++ E + I+ L +I + +
Sbjct: 2 DPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKG 61
Query: 84 RIELKTELEDIHMNIESELIKRI 106
+K EDIH E L + I
Sbjct: 62 VFVVKQSDEDIHTANERRLKELI 84
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 45.1 bits (105), Expect = 1e-06
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Query: 37 DRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELE-DIH 95
DR L +E +A G++ +I + I + + T L +I
Sbjct: 18 DRALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAIDKIDFDALATATGLAGNIA 77
Query: 96 MNIESELIKRIE 107
+ +L ++
Sbjct: 78 IPFVKQLTAIVK 89
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp.,
ym55-1 [TaxId: 1409]}
Length = 462
Score = 31.8 bits (71), Expect = 0.029
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 14/78 (17%)
Query: 44 DIEGSIAHVTMLHSCGLVKG--------------EEKDIIIKTLNEIEVDIRENRIELKT 89
I G H ++ S G+VK E I+K +E+ ++ +
Sbjct: 31 PITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDP 90
Query: 90 ELEDIHMNIESELIKRIE 107
+I + I
Sbjct: 91 IQGGAGTSINMNANEVIA 108
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 30.4 bits (67), Expect = 0.097
Identities = 10/63 (15%), Positives = 16/63 (25%)
Query: 37 DRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHM 96
DR + ++ A S GLV I D + T
Sbjct: 19 DRGRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQAERYDTGALANAIATAGNSAIP 78
Query: 97 NIE 99
++
Sbjct: 79 LVK 81
>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
[Bacillus sp. NRRL B-14911] gi|89084274|gb|EAR63432.1|
adenylosuccinate lyase [Bacillus sp. NRRL B-14911] E=0
s/c=1.85 id=87% cov=100%
Length = 408
Score = 28.7 bits (63), Expect = 0.33
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 37 DRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHM 96
+ +K +E I G + E+ I + + I E IE +T D+ +
Sbjct: 8 EENRFKAWLEVEILACEAWAELGDIPKEDVQKIRENASFDIERINE--IEQETR-HDV-V 63
Query: 97 NIESELIKRI 106
+ + +
Sbjct: 64 AFTRAVSETL 73
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 27.0 bits (59), Expect = 1.3
Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Query: 39 RLYKEDIEGSIAHVTML---------HSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKT 89
R+ E + S+ H L GL+ E+ I + +E+ ++ L
Sbjct: 31 RISTEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAI 90
Query: 90 ELEDIHMNIESELIKRIEFQYYFLL 114
+ + + + LL
Sbjct: 91 WQTGSGTQSNMNMNEVLANRASELL 115
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 25.5 bits (56), Expect = 2.9
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 7 TETMNMKLWKGCFKENLNKFVEQFTESITVD 37
N W+G L K Q ++ +
Sbjct: 6 FSEENAPKWRGLLVPALKKVQGQVHPTLESN 36
>d1mija_ a.4.1.1 (A:) Homeo-prospero domain of Prospero protein
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 152
Score = 25.1 bits (55), Expect = 3.6
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 87 LKTELEDIHMN--IESELIKRI----EFQYYFLLLQYSELSI-ELKTELEDIHMNIESEL 139
LK DI N ++L+K EF YY + +Y+ ++ E +D+ + +SEL
Sbjct: 27 LKMYFPDIKFNKNNTAQLVKWFSNFREF-YYIQMEKYARQAVTEGIKTPDDLLIAGDSEL 85
Query: 140 IK 141
+
Sbjct: 86 YR 87
>d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 360
Score = 24.4 bits (53), Expect = 7.5
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 2 SDNIATETMNMKLWKGCFKENLNKFVEQ 29
SD+ T N W F ++ F ++
Sbjct: 27 SDDPKKATPNEISWINVFANSIPSFKKR 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.374
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 608,981
Number of extensions: 27952
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 36
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.2 bits)