BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10236
(515 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 11/157 (7%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI--PLNAL---- 110
V+ +S E+K E L ++ S L +AG + Q+ + + + P +
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 111 KRRLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLS 169
K R V QS+ L P V + F LR+ PK I E + E LGLT++L+
Sbjct: 82 KERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVRE----VAEXLGLTELLN 137
Query: 170 TRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
+ L+ + +R+++ ++ + L D P +D
Sbjct: 138 RKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLD 174
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
L++ LG+ + V L+ EL+R++IA L+ ADI LLD P+ ++D+
Sbjct: 385 LLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDV 434
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 19/219 (8%)
Query: 50 SSKNKCF-VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI-PL 107
S K K F + +S +V+ E I+ + L+ +AG + + +++L+G + L
Sbjct: 8 SRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL 67
Query: 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLR--RPPKHSIKVTTSEQMGLLIEELGLT 165
+ K + +V L P +NV + L F ++ + PK + ++ L++ LT
Sbjct: 68 SPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLT 127
Query: 166 QVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGP 225
L+ E +R+++A L+++ ILLLD P +D E L
Sbjct: 128 ---------LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK--- 175
Query: 226 AGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264
K+ +L + E M R+ +V G+ + GK
Sbjct: 176 ---KNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGK 211
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 11/157 (7%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI--PLNAL---- 110
V+ +S EVK E + ++ S L +AG + Q+ + + P +
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 111 KRRLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLS 169
K R + + QS+ L P + V + F LR+ P+ I E + E LGLT++L+
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE----VAELLGLTELLN 134
Query: 170 TRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
+ L+ + +R+++ ++ + L+D P +D
Sbjct: 135 RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 8/175 (4%)
Query: 45 LEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHS 104
L+V + F V FE+ G + ++ + L+ +AG +V LNG
Sbjct: 3 LKVRAEKRLGNFRLNVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGAD 61
Query: 105 I-PLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELG 163
I PL +R + +V L P L+V + + + ++ +V ++ + E+LG
Sbjct: 62 ITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGL------RNVERVERDRRVREMAEKLG 115
Query: 164 LTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLR 218
+ +L + RL+ E +R+++A L+ +LLLD P +D+ L+E LR
Sbjct: 116 IAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 175 LTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVI 234
L+ E +R++IA ++ DIL+LD P V +D L+ + W + GK VI
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT------LGKTVI 194
Query: 235 LTLQPPTYEIFTMIS---RVLLVSGGRTMYSGKRRDMLPYF 272
L +++I T+I+ RV+++ G+ ++ G R + L +
Sbjct: 195 LI----SHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 231
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 175 LTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVI 234
L+ E +R++IA ++ DIL+LD P V +D L+ + W + GK VI
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT------LGKTVI 192
Query: 235 LTLQPPTYEIFTMIS---RVLLVSGGRTMYSGKRRDMLPYF 272
L +++I T+I+ RV+++ G+ ++ G R + L +
Sbjct: 193 LI----SHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
L++ LG+ + V L+ EL+R++IA L+ ADI LLD P+ ++D+
Sbjct: 455 LLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDV 504
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
L++ LG+ + V L+ EL+R++IA L+ ADI LLD P+ ++D+
Sbjct: 441 LLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDV 490
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116
V GVSFEVK E +A++ S L LAG + ++ + + K R V
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVG 78
Query: 117 VRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRL 175
+ Q++ L P + V + + F RR K ++ E + +L + +L + +L
Sbjct: 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVE----IARKLLIDNLLDRKPTQL 134
Query: 176 TTSELKRLSIACCLMSHADILLLDCPTVFMD 206
+ + +R+++A L+ +LL D P +D
Sbjct: 135 SGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 37/61 (60%)
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFL 217
+ + L L ++L + V L+ EL++L IA L AD+ +LD P+ ++D+ + + + + +
Sbjct: 369 VTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAI 428
Query: 218 R 218
+
Sbjct: 429 K 429
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/167 (18%), Positives = 71/167 (42%), Gaps = 20/167 (11%)
Query: 65 KGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILN--------GHSIPLNALKRRLVY 116
K + +L ++ + + +L LAG ++I N G L + + +Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAG-------EIIPNFGDPNSKVGKDEVLKRFRGKEIY 75
Query: 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSI-----KVTTSEQMGLLIEELGLTQVLSTR 171
+ S EL + + + + + K ++ K+ + + E L +T + +
Sbjct: 76 NYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKD 135
Query: 172 VGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLR 218
L+ L+RL +A L+ AD+ + D P+ ++D+ + + + +R
Sbjct: 136 ANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIR 182
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 23/164 (14%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP-LNA--LKRR 113
+QG+S EVK + LA++ +S ++ L D A V L+G I LN L+ +
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108
Query: 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVL----- 168
L V SQ + + ++A+ + + + R V + E++ +E + Q +
Sbjct: 1109 LGIV-SQEPILFDCSIAENIAYGDNSR--------VVSYEEIVRAAKEANIHQFIDSLPD 1159
Query: 169 --STRVG----RLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
+TRVG +L+ + +R++IA L+ ILLLD T +D
Sbjct: 1160 KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALD 1203
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 23/164 (14%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP-LNA--LKRR 113
+QG+S EVK + LA++ +S ++ L D A V L+G I LN L+ +
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108
Query: 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVL----- 168
L V SQ + + ++A+ + + + R V + E++ +E + Q +
Sbjct: 1109 LGIV-SQEPILFDCSIAENIAYGDNSR--------VVSYEEIVRAAKEANIHQFIDSLPD 1159
Query: 169 --STRVG----RLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
+TRVG +L+ + +R++IA L+ ILLLD T +D
Sbjct: 1160 KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALD 1203
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 60/112 (53%), Gaps = 13/112 (11%)
Query: 97 QVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMG 156
++I NG +P+ +K ++ ++ + + +++V L + L + +KV +E M
Sbjct: 65 EIIYNG--VPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASL-----YGVKVNKNEIMD 117
Query: 157 LL--IEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
L +E L L + ++G L+ ++R+ +A L+ +A+I +LD P V +D
Sbjct: 118 ALESVEVLDLKK----KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 165
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 5/163 (3%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI-PLNALKRRLV 115
V+GVSF+++ E++ ++ S IL +AG V + G + L KR +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90
Query: 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRL 175
V L + V ++F +R PK + E L+ + L + L
Sbjct: 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRE----LLRFMRLESYANRFPHEL 146
Query: 176 TTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLR 218
+ + +R+++A L +LL D P +D L F+R
Sbjct: 147 SGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVR 189
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 70/155 (45%), Gaps = 5/155 (3%)
Query: 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKR 112
N V ++ +K E L ++ S L +AG + ++ + K
Sbjct: 23 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD 82
Query: 113 RLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTR 171
R + + QS+ + P + V + + F +++ PK I +++ E L + ++L+
Sbjct: 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEI----DKRVRWAAELLQIEELLNRY 138
Query: 172 VGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
+L+ + +R+++A ++ D+LL+D P +D
Sbjct: 139 PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 70/155 (45%), Gaps = 5/155 (3%)
Query: 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKR 112
N V ++ +K E L ++ S L +AG + ++ + K
Sbjct: 24 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD 83
Query: 113 RLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTR 171
R + + QS+ + P + V + + F +++ PK I +++ E L + ++L+
Sbjct: 84 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEI----DKRVRWAAELLQIEELLNRY 139
Query: 172 VGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
+L+ + +R+++A ++ D+LL+D P +D
Sbjct: 140 PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 174
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 149 VTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
V T E + + E G T + ++ + L+ +L++A ++ +ADILLLD PT +D
Sbjct: 522 VGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDT 581
Query: 208 FDTFFLVEFLR 218
+ +LV +L
Sbjct: 582 VNVAWLVNYLN 592
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 149 VTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
V T E + + E G T + ++ + L+ +L++A ++ +ADILLLD PT +D
Sbjct: 516 VGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDT 575
Query: 208 FDTFFLVEFLR 218
+ +LV +L
Sbjct: 576 VNVAWLVNYLN 586
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 153 EQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFF 212
E + I+ L L VL + +L+ EL+R +I + AD+ + D P+ ++D+
Sbjct: 200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLN 259
Query: 213 LVEFLR 218
+ +R
Sbjct: 260 AAQIIR 265
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
+++ L + ++ V L+ EL+R++I L ADI L+D P+ ++D
Sbjct: 451 VVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLD 499
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 149 VTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
V T E + + E G T ++++ + L+ +L++A ++ +ADILLLD PT +D
Sbjct: 522 VGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581
Query: 208 FDTFFLVEFLR 218
+ +LV +L
Sbjct: 582 VNVAWLVNYLN 592
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 8/153 (5%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI---PLNALKRR 113
++G+ +V +++ ++ + L A+AG A+ ++I NG I P + + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 114 -LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRV 172
+ V + PEL V + L ++ R K IK L L + L
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAY-NRKDKEGIKRDLEWIFSLFPR---LKERLKQLG 137
Query: 173 GRLTTSELKRLSIACCLMSHADILLLDCPTVFM 205
G L+ E + L+I L S +L D P++ +
Sbjct: 138 GTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGL 170
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 88/233 (37%), Gaps = 39/233 (16%)
Query: 60 VSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNA-----LKRRL 114
+S EV+ E+L ++ + +L +AG K + G PL A L
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKG-SIQFAGQ--PLEAWSATKLALHR 75
Query: 115 VYVRSQS---FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTR 171
Y+ Q F +P V LT + H + T +E + + L L L
Sbjct: 76 AYLSQQQTPPFATP---VWHYLTLHQHDK---------TRTELLNDVAGALALDDKLGRS 123
Query: 172 VGRLTTSELKRLSIACCLMS-------HADILLLDCPTVFMDIFDTFFLVEFLRGWASGG 224
+L+ E +R+ +A ++ +LLLD P +D+ L + L + G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQG 183
Query: 225 PAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML--PYFAAA 275
+ I+ R L+ GG+ + SG+R ++L P A A
Sbjct: 184 -------LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQA 229
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 87/233 (37%), Gaps = 39/233 (16%)
Query: 60 VSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNA-----LKRRL 114
+S EV+ E+L ++ + +L AG K + G PL A L
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKG-SIQFAGQ--PLEAWSATKLALHR 75
Query: 115 VYVRSQS---FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTR 171
Y+ Q F +P V LT + H + T +E + + L L L
Sbjct: 76 AYLSQQQTPPFATP---VWHYLTLHQHDK---------TRTELLNDVAGALALDDKLGRS 123
Query: 172 VGRLTTSELKRLSIACCLMS-------HADILLLDCPTVFMDIFDTFFLVEFLRGWASGG 224
+L+ E +R+ +A ++ +LLLD P +D+ L + L + G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQG 183
Query: 225 PAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML--PYFAAA 275
+ I+ R L+ GG+ + SG+R ++L P A A
Sbjct: 184 -------LAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQA 229
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 88/233 (37%), Gaps = 39/233 (16%)
Query: 60 VSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNA-----LKRRL 114
+S EV+ E+L ++ + +L +AG K + G PL A L
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKG-SIQFAGQ--PLEAWSATKLALHR 75
Query: 115 VYVRSQS---FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTR 171
Y+ Q F +P V LT + H + T +E + + L L L
Sbjct: 76 AYLSQQQTPPFATP---VWHYLTLHQHDK---------TRTELLNDVAGALALDDKLGRS 123
Query: 172 VGRLTTSELKRLSIACCLMS-------HADILLLDCPTVFMDIFDTFFLVEFLRGWASGG 224
+L+ E +R+ +A ++ +LLLD P +D+ L + L + G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQG 183
Query: 225 PAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML--PYFAAA 275
+ I+ R L+ GG+ + SG+R ++L P A A
Sbjct: 184 -------LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQA 229
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 86/233 (36%), Gaps = 39/233 (16%)
Query: 60 VSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNA-----LKRRL 114
+S EV+ E+L ++ + +L AG K + G PL A L
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKG-SIQFAGQ--PLEAWSATKLALHR 75
Query: 115 VYVRSQS---FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTR 171
Y+ Q F +P V LT + H + T +E + + L L L
Sbjct: 76 AYLSQQQTPPFATP---VWHYLTLHQHDK---------TRTELLNDVAGALALDDKLGRS 123
Query: 172 VGRLTTSELKRLSIACCLMS-------HADILLLDCPTVFMDIFDTFFLVEFLRGWASGG 224
+L+ E +R+ +A ++ +LLLD P +D+ L + L G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQG 183
Query: 225 PAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML--PYFAAA 275
+ I+ R L+ GG+ + SG+R ++L P A A
Sbjct: 184 -------LAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQA 229
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 163 GLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWAS 222
GL + + RV + +++L IA LM + + +LD PT +D+ + + + L+ +
Sbjct: 135 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194
Query: 223 GGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFAAAD 276
G + IL E+ + R+ L+ G + +G ++ + A +
Sbjct: 195 EG-------LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 241
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 8/174 (4%)
Query: 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR-NDAKAFQ 97
+ V+ + K K + VSF + + +A++ S GK+ + L R D +
Sbjct: 341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSG-SGKSTIANLFTRFYDVDSGS 399
Query: 98 VILNGHSI---PLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQ 154
+ L+GH + L L+R V L + +A + + + + +
Sbjct: 400 ICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAH 458
Query: 155 MGLLIEEL--GLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
IE + GL V+ L+ + +R++IA L+ A +L+LD T +D
Sbjct: 459 AMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR-NDAKAFQVILNGHSIP---LNALKR 112
++ ++ ++ E +A + S GK+ L L R D + Q++++GH+I +L+
Sbjct: 357 LKDINLSIEKGETVAFVGMSG-GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415
Query: 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIE-ELGLTQVLSTR 171
++ V+ + L + L L RP +V + +M + + L Q T
Sbjct: 416 QIGLVQQDNILFSDTVKENIL-----LGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTE 470
Query: 172 VG----RLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
VG +L+ + +RLSIA +++ IL+LD T +D+
Sbjct: 471 VGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 510
>pdb|3D5B|4 Chain 4, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5D|4 Chain 4, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1F|4 Chain 4, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes As Described In
Remark 400.
pdb|3F1H|4 Chain 4, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes As
Described In Remark 400
Length = 97
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 16/66 (24%)
Query: 406 MCLASWPLLI--WLSMARCHGHDRAAVESDIKDGLYSRAVYIIVMLCCSIPASLIIWLGL 463
M L PL WL+ HG DRA E+++K+G++ + V PA +I G
Sbjct: 1 MPLGVHPLYTKRWLA----HGQDRAKKEANVKEGIHPKLV----------PARIICGCGN 46
Query: 464 VIPAYA 469
VI Y+
Sbjct: 47 VIETYS 52
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFL 217
L++ +G + +G L+T E +R+ IA L +L+LD P +D L+ L
Sbjct: 145 LLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSIL 204
Query: 218 RGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
+ P + + + EI S++LL+ G+++ G D+L
Sbjct: 205 DSLSDSYPT-----LAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 50 SSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI---- 105
S +N + +S + E+L I+ S +L LAG + ++ L+G +I
Sbjct: 13 SFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKN 72
Query: 106 -PLNALKRRLVYVRSQSFLSPELNVAQTLTF 135
L +RRL Y+ + L P L V + + +
Sbjct: 73 TNLPVRERRLGYLVQEGVLFPHLTVYRNIAY 103
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/158 (18%), Positives = 70/158 (44%), Gaps = 14/158 (8%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116
++G++ +K EV AI+ + + + G + +++ + P++ ++ ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNK--PIDYSRKGIMK 81
Query: 117 VRSQ---SFLSPE-----LNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVL 168
+R F P+ +V Q ++F + + P+ I+ + + G+ +
Sbjct: 82 LRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNAL----KRTGIEHLK 137
Query: 169 STRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
L+ + KR++IA L+ +L+LD PT +D
Sbjct: 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDA-LAGRND 92
L ++ L V S ++K ++G+S +V EV AIM + GK+ L A LAGR D
Sbjct: 21 LSIKDLHV--SVEDKAILRGLSLDVHPGEVHAIMGPNG-SGKSTLSATLAGRED 71
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDA-LAGRND 92
L ++ L V S ++K ++G+S +V EV AIM + GK+ L A LAGR D
Sbjct: 2 LSIKDLHV--SVEDKAILRGLSLDVHPGEVHAIMGPNG-SGKSTLSATLAGRED 52
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 152 SEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIF 208
+EQ ++ E G+T L+ + R+S+A + AD+ LLD P ++D+F
Sbjct: 147 AEQDNTVLGEGGVT---------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 194
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 152 SEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIF 208
+EQ ++ E G+T L+ + R+S+A + AD+ LLD P ++D+F
Sbjct: 147 AEQDNTVLGEGGVT---------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 194
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 152 SEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIF 208
+EQ ++ E G+T L+ + R+S+A + AD+ LLD P ++D+F
Sbjct: 146 AEQDNTVLGEGGVT---------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 193
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 152 SEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIF 208
+EQ ++ E G+T L+ + R+S+A + AD+ LLD P ++D+F
Sbjct: 147 AEQDNTVLGEGGVT---------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 194
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 152 SEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIF 208
+EQ ++ E G+T L+ + R+S+A + AD+ LLD P ++D+F
Sbjct: 147 AEQDNTVLGEGGVT---------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 194
>pdb|1D9Y|A Chain A, Neisseria Gonorrhoeae Ferric Binding Protein
Length = 309
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 80 GKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHL 139
G A+L + +++AK F L G +R L VR++ L+P + L + L
Sbjct: 229 GAAVLKSSQNKDEAKKFVAFLAGKE-----GQRALTAVRAEYPLNPHVVSTFNLEPIAKL 283
Query: 140 RRPPKHSIKVTTSEQMGLLIEELGL 164
P + V+ E L+E+ G+
Sbjct: 284 EAPQVSATTVSEKEHATRLLEQAGM 308
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 139 LRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198
L PK +K +E + L+ GL + L+ + +R++IA L S+ +LL
Sbjct: 132 LDNTPKDEVKRRVTELLSLV----GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLC 187
Query: 199 DCPTVFMDIFDTFFLVEFLR 218
D T +D T ++E L+
Sbjct: 188 DQATSALDPATTRSILELLK 207
>pdb|1O7T|A Chain A, Metal Nanoclusters Bound To The Ferric Binding Protein
From Neisseria Gonorrhoeae.
pdb|1O7T|B Chain B, Metal Nanoclusters Bound To The Ferric Binding Protein
From Neisseria Gonorrhoeae.
pdb|1O7T|C Chain C, Metal Nanoclusters Bound To The Ferric Binding Protein
From Neisseria Gonorrhoeae.
pdb|1O7T|D Chain D, Metal Nanoclusters Bound To The Ferric Binding Protein
From Neisseria Gonorrhoeae.
pdb|1O7T|E Chain E, Metal Nanoclusters Bound To The Ferric Binding Protein
From Neisseria Gonorrhoeae.
pdb|1O7T|F Chain F, Metal Nanoclusters Bound To The Ferric Binding Protein
From Neisseria Gonorrhoeae.
pdb|1O7T|G Chain G, Metal Nanoclusters Bound To The Ferric Binding Protein
From Neisseria Gonorrhoeae.
pdb|1O7T|H Chain H, Metal Nanoclusters Bound To The Ferric Binding Protein
From Neisseria Gonorrhoeae.
pdb|1O7T|I Chain I, Metal Nanoclusters Bound To The Ferric Binding Protein
From Neisseria Gonorrhoeae
Length = 309
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 80 GKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHL 139
G A+L + +++AK F L G +R L VR++ L+P + L + L
Sbjct: 229 GAAVLKSSQNKDEAKKFVAFLAGKE-----GQRALTAVRAEYPLNPHVVSTFNLEPIAKL 283
Query: 140 RRPPKHSIKVTTSEQMGLLIEELGL 164
P + V+ E L+E+ G+
Sbjct: 284 EAPQVSATTVSEKEHATRLLEQAGM 308
>pdb|1R1N|A Chain A, Tri-Nuclear Oxo-Iron Clusters In The Ferric Binding
Protein From N. Gonorrhoeae
pdb|1R1N|B Chain B, Tri-Nuclear Oxo-Iron Clusters In The Ferric Binding
Protein From N. Gonorrhoeae
pdb|1R1N|C Chain C, Tri-Nuclear Oxo-Iron Clusters In The Ferric Binding
Protein From N. Gonorrhoeae
pdb|1R1N|D Chain D, Tri-Nuclear Oxo-Iron Clusters In The Ferric Binding
Protein From N. Gonorrhoeae
pdb|1R1N|E Chain E, Tri-Nuclear Oxo-Iron Clusters In The Ferric Binding
Protein From N. Gonorrhoeae
pdb|1R1N|F Chain F, Tri-Nuclear Oxo-Iron Clusters In The Ferric Binding
Protein From N. Gonorrhoeae
pdb|1R1N|G Chain G, Tri-Nuclear Oxo-Iron Clusters In The Ferric Binding
Protein From N. Gonorrhoeae
pdb|1R1N|H Chain H, Tri-Nuclear Oxo-Iron Clusters In The Ferric Binding
Protein From N. Gonorrhoeae
pdb|1R1N|I Chain I, Tri-Nuclear Oxo-Iron Clusters In The Ferric Binding
Protein From N. Gonorrhoeae
pdb|1XC1|A Chain A, Oxo Zirconium(Iv) Cluster In The Ferric Binding Protein
(Fbp)
pdb|1XC1|B Chain B, Oxo Zirconium(Iv) Cluster In The Ferric Binding Protein
(Fbp)
pdb|1XC1|C Chain C, Oxo Zirconium(Iv) Cluster In The Ferric Binding Protein
(Fbp)
pdb|1XC1|D Chain D, Oxo Zirconium(Iv) Cluster In The Ferric Binding Protein
(Fbp)
pdb|1XC1|E Chain E, Oxo Zirconium(Iv) Cluster In The Ferric Binding Protein
(Fbp)
pdb|1XC1|F Chain F, Oxo Zirconium(Iv) Cluster In The Ferric Binding Protein
(Fbp)
pdb|1XC1|G Chain G, Oxo Zirconium(Iv) Cluster In The Ferric Binding Protein
(Fbp)
pdb|1XC1|H Chain H, Oxo Zirconium(Iv) Cluster In The Ferric Binding Protein
(Fbp)
pdb|1XC1|I Chain I, Oxo Zirconium(Iv) Cluster In The Ferric Binding Protein
(Fbp)
pdb|3TYH|A Chain A, Crystal Structure Of Oxo-Cupper Clusters Binding To Ferric
Binding Protein From Neisseria Gonorrhoeae
pdb|3TYH|B Chain B, Crystal Structure Of Oxo-Cupper Clusters Binding To Ferric
Binding Protein From Neisseria Gonorrhoeae
pdb|3TYH|C Chain C, Crystal Structure Of Oxo-Cupper Clusters Binding To Ferric
Binding Protein From Neisseria Gonorrhoeae
pdb|3TYH|D Chain D, Crystal Structure Of Oxo-Cupper Clusters Binding To Ferric
Binding Protein From Neisseria Gonorrhoeae
pdb|3TYH|E Chain E, Crystal Structure Of Oxo-Cupper Clusters Binding To Ferric
Binding Protein From Neisseria Gonorrhoeae
pdb|3TYH|F Chain F, Crystal Structure Of Oxo-Cupper Clusters Binding To Ferric
Binding Protein From Neisseria Gonorrhoeae
pdb|3TYH|G Chain G, Crystal Structure Of Oxo-Cupper Clusters Binding To Ferric
Binding Protein From Neisseria Gonorrhoeae
pdb|3TYH|H Chain H, Crystal Structure Of Oxo-Cupper Clusters Binding To Ferric
Binding Protein From Neisseria Gonorrhoeae
pdb|3TYH|I Chain I, Crystal Structure Of Oxo-Cupper Clusters Binding To Ferric
Binding Protein From Neisseria Gonorrhoeae
Length = 309
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 80 GKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHL 139
G A+L + +++AK F L G +R L VR++ L+P + L + L
Sbjct: 229 GAAVLKSSQNKDEAKKFVAFLAGKE-----GQRALTAVRAEYPLNPHVVSTFNLEPIAKL 283
Query: 140 RRPPKHSIKVTTSEQMGLLIEELGL 164
P + V+ E L+E+ G+
Sbjct: 284 EAPQVSATTVSEKEHATRLLEQAGM 308
>pdb|1X3L|A Chain A, Crystal Structure Of The Ph0495 Protein From Pyrococccus
Horikoshii Ot3
Length = 440
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 12/68 (17%)
Query: 51 SKNKCFVQGVSFEVKGSEVLAIMSTSALE-GKAILDALAGRN-----------DAKAFQV 98
S +K VQG FE+KG + + +A E +AI D L + + K +V
Sbjct: 34 SDDKIIVQGKEFEIKGKVYVIALGKAACEMARAIEDILDVEDGVAVTKYGYGKELKRIKV 93
Query: 99 ILNGHSIP 106
I GH IP
Sbjct: 94 IEAGHPIP 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,323,534
Number of Sequences: 62578
Number of extensions: 550696
Number of successful extensions: 1287
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1262
Number of HSP's gapped (non-prelim): 59
length of query: 515
length of database: 14,973,337
effective HSP length: 103
effective length of query: 412
effective length of database: 8,527,803
effective search space: 3513454836
effective search space used: 3513454836
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)