Query psy10236
Match_columns 515
No_of_seqs 427 out of 2682
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 21:21:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061|consensus 100.0 3E-78 6.5E-83 664.0 46.8 436 39-491 25-477 (613)
2 PLN03211 ABC transporter G-25; 100.0 5.3E-77 1.1E-81 660.2 47.6 429 52-499 79-535 (659)
3 TIGR00955 3a01204 The Eye Pigm 100.0 2.1E-74 4.5E-79 638.4 50.4 422 52-491 36-480 (617)
4 TIGR00956 3a01205 Pleiotropic 100.0 1.1E-72 2.4E-77 668.6 45.2 434 53-500 73-550 (1394)
5 PLN03140 ABC transporter G fam 100.0 6.1E-71 1.3E-75 652.0 55.6 437 39-491 867-1335(1470)
6 PLN03140 ABC transporter G fam 100.0 4.5E-72 9.7E-77 661.7 45.2 436 53-500 177-667 (1470)
7 TIGR00956 3a01205 Pleiotropic 100.0 2E-70 4.3E-75 649.3 53.8 434 39-490 759-1223(1394)
8 KOG0065|consensus 100.0 6.5E-71 1.4E-75 617.6 35.0 450 24-490 772-1242(1391)
9 KOG0065|consensus 100.0 1.4E-64 3E-69 566.8 30.0 436 53-501 127-590 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 6E-56 1.3E-60 414.1 24.0 220 38-269 1-224 (240)
11 COG1125 OpuBA ABC-type proline 100.0 6.3E-53 1.4E-57 401.3 22.1 219 39-269 1-224 (309)
12 COG1120 FepC ABC-type cobalami 100.0 4.6E-52 1E-56 405.5 22.9 224 39-270 2-228 (258)
13 COG1131 CcmA ABC-type multidru 100.0 1.9E-51 4.2E-56 415.3 26.7 224 38-273 3-229 (293)
14 COG1135 AbcC ABC-type metal io 100.0 7.1E-52 1.5E-56 405.0 22.6 221 39-269 1-230 (339)
15 COG1127 Ttg2A ABC-type transpo 100.0 1.8E-51 3.8E-56 389.7 22.5 223 37-270 6-235 (263)
16 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.2E-50 2.5E-55 393.8 23.9 223 38-270 3-227 (254)
17 COG3839 MalK ABC-type sugar tr 100.0 9.5E-51 2.1E-55 410.5 23.6 221 38-270 2-223 (338)
18 COG4555 NatA ABC-type Na+ tran 100.0 4.1E-51 8.9E-56 376.7 18.8 235 39-293 1-237 (245)
19 COG3842 PotA ABC-type spermidi 100.0 7E-51 1.5E-55 413.5 21.9 221 38-269 4-225 (352)
20 COG3638 ABC-type phosphate/pho 100.0 1.1E-50 2.3E-55 383.4 20.5 226 38-270 2-237 (258)
21 COG1136 SalX ABC-type antimicr 100.0 5.7E-50 1.2E-54 383.7 24.6 210 39-259 1-220 (226)
22 COG1116 TauB ABC-type nitrate/ 100.0 5.6E-50 1.2E-54 384.2 23.0 209 38-260 2-212 (248)
23 PRK13537 nodulation ABC transp 100.0 5.2E-49 1.1E-53 400.6 28.0 223 35-270 3-227 (306)
24 COG1118 CysA ABC-type sulfate/ 100.0 2.7E-49 5.9E-54 386.0 20.4 222 39-270 2-227 (345)
25 TIGR02314 ABC_MetN D-methionin 100.0 5.5E-48 1.2E-52 397.3 28.0 220 39-269 1-229 (343)
26 COG1124 DppF ABC-type dipeptid 100.0 2.4E-48 5.3E-53 369.9 21.7 221 38-270 2-231 (252)
27 PRK13536 nodulation factor exp 100.0 1.3E-47 2.8E-52 395.0 28.4 221 37-270 39-261 (340)
28 PRK11650 ugpC glycerol-3-phosp 100.0 9.8E-48 2.1E-52 398.1 27.6 220 39-269 3-223 (356)
29 TIGR03265 PhnT2 putative 2-ami 100.0 1.1E-47 2.3E-52 397.4 27.9 221 38-270 3-224 (353)
30 PRK11432 fbpC ferric transport 100.0 1.2E-47 2.6E-52 396.5 27.8 220 38-269 5-225 (351)
31 COG2884 FtsE Predicted ATPase 100.0 3.6E-48 7.9E-53 354.4 20.8 214 39-264 1-220 (223)
32 cd03261 ABC_Org_Solvent_Resist 100.0 1.8E-47 3.8E-52 375.3 26.4 217 40-268 1-224 (235)
33 COG1137 YhbG ABC-type (unclass 100.0 5E-49 1.1E-53 362.5 13.5 222 38-270 3-228 (243)
34 COG0411 LivG ABC-type branched 100.0 3.5E-48 7.6E-53 369.1 19.3 224 38-269 3-238 (250)
35 COG1122 CbiO ABC-type cobalt t 100.0 2.4E-47 5.1E-52 371.6 24.4 222 38-270 2-228 (235)
36 PRK10851 sulfate/thiosulfate t 100.0 5.3E-47 1.1E-51 392.3 27.9 223 39-269 2-225 (353)
37 TIGR03258 PhnT 2-aminoethylpho 100.0 5.3E-47 1.2E-51 393.0 27.6 218 39-269 5-227 (362)
38 PRK09452 potA putrescine/sperm 100.0 5.3E-47 1.1E-51 394.5 27.6 222 36-269 11-233 (375)
39 PRK11607 potG putrescine trans 100.0 1E-46 2.2E-51 392.9 29.5 224 34-269 14-238 (377)
40 TIGR00960 3a0501s02 Type II (G 100.0 5.8E-47 1.3E-51 366.8 24.8 210 39-259 1-216 (216)
41 TIGR01288 nodI ATP-binding ABC 100.0 1.1E-46 2.3E-51 383.4 27.5 219 38-269 3-223 (303)
42 COG1117 PstB ABC-type phosphat 100.0 1.7E-47 3.7E-52 356.0 19.6 229 37-288 5-247 (253)
43 cd03265 ABC_DrrA DrrA is the A 100.0 1.2E-46 2.5E-51 365.9 26.0 215 40-267 1-218 (220)
44 PRK11153 metN DL-methionine tr 100.0 1.7E-46 3.7E-51 387.7 28.1 221 39-269 1-229 (343)
45 cd03259 ABC_Carb_Solutes_like 100.0 1.1E-46 2.4E-51 364.1 24.7 211 40-263 1-213 (213)
46 COG0410 LivF ABC-type branched 100.0 6.2E-47 1.3E-51 357.9 22.4 219 38-269 2-225 (237)
47 cd03296 ABC_CysA_sulfate_impor 100.0 1.9E-46 4E-51 369.0 26.1 222 39-268 2-224 (239)
48 PRK11000 maltose/maltodextrin 100.0 2.3E-46 5E-51 390.1 27.8 219 39-269 3-222 (369)
49 PRK09536 btuD corrinoid ABC tr 100.0 2E-46 4.4E-51 392.5 27.4 223 38-269 2-227 (402)
50 COG4152 ABC-type uncharacteriz 100.0 2.6E-47 5.7E-52 360.7 18.6 220 39-272 2-221 (300)
51 TIGR03522 GldA_ABC_ATP gliding 100.0 2.6E-46 5.5E-51 380.3 27.4 218 39-270 2-221 (301)
52 cd03219 ABC_Mj1267_LivG_branch 100.0 2.6E-46 5.6E-51 367.0 25.2 220 40-268 1-230 (236)
53 cd03258 ABC_MetN_methionine_tr 100.0 3.5E-46 7.5E-51 365.5 25.9 219 39-268 1-228 (233)
54 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.9E-46 1.1E-50 361.5 26.6 215 40-266 1-219 (220)
55 cd03218 ABC_YhbG The ABC trans 100.0 2.8E-46 6.1E-51 365.8 25.0 216 40-268 1-220 (232)
56 cd03266 ABC_NatA_sodium_export 100.0 4E-46 8.6E-51 361.4 25.7 214 39-263 1-218 (218)
57 TIGR01188 drrA daunorubicin re 100.0 2.7E-46 5.9E-51 380.3 25.4 208 52-270 4-213 (302)
58 cd03269 ABC_putative_ATPase Th 100.0 4.9E-46 1.1E-50 358.8 25.4 210 40-263 1-210 (210)
59 cd03263 ABC_subfamily_A The AB 100.0 4.3E-46 9.3E-51 361.7 25.1 217 40-268 1-219 (220)
60 PRK13643 cbiO cobalt transport 100.0 1.1E-45 2.4E-50 373.3 28.5 232 39-282 1-248 (288)
61 PRK09493 glnQ glutamine ABC tr 100.0 8.2E-46 1.8E-50 364.6 26.7 218 39-269 1-224 (240)
62 cd03301 ABC_MalK_N The N-termi 100.0 6.8E-46 1.5E-50 358.5 25.6 211 40-263 1-213 (213)
63 cd03256 ABC_PhnC_transporter A 100.0 5.9E-46 1.3E-50 365.5 25.3 221 40-268 1-232 (241)
64 PRK11264 putative amino-acid A 100.0 1.1E-45 2.4E-50 365.8 26.6 219 39-269 3-232 (250)
65 PRK13637 cbiO cobalt transport 100.0 2.4E-45 5.2E-50 370.7 29.6 220 39-269 2-233 (287)
66 PRK11831 putative ABC transpor 100.0 1.2E-45 2.7E-50 369.5 26.9 222 37-269 5-232 (269)
67 TIGR02315 ABC_phnC phosphonate 100.0 6.1E-46 1.3E-50 366.0 24.2 223 39-268 1-233 (243)
68 PRK11629 lolD lipoprotein tran 100.0 2.1E-45 4.6E-50 360.2 27.8 216 38-265 4-229 (233)
69 PRK13647 cbiO cobalt transport 100.0 2.4E-45 5.1E-50 368.4 28.6 219 38-268 3-225 (274)
70 cd03260 ABC_PstB_phosphate_tra 100.0 1.2E-45 2.7E-50 360.2 25.8 214 40-267 1-226 (227)
71 COG3840 ThiQ ABC-type thiamine 100.0 2E-46 4.4E-51 340.4 18.6 217 39-269 1-218 (231)
72 cd03268 ABC_BcrA_bacitracin_re 100.0 8.5E-46 1.8E-50 356.6 23.8 207 40-263 1-208 (208)
73 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8.1E-46 1.8E-50 359.2 23.8 208 40-259 1-218 (218)
74 TIGR01186 proV glycine betaine 100.0 1.5E-45 3.2E-50 381.4 26.8 208 52-269 4-218 (363)
75 PRK13650 cbiO cobalt transport 100.0 2.9E-45 6.4E-50 368.7 28.1 220 38-269 3-228 (279)
76 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.6E-45 3.5E-50 363.0 25.7 216 40-268 1-223 (242)
77 cd03224 ABC_TM1139_LivF_branch 100.0 1.4E-45 2.9E-50 358.5 24.7 214 40-268 1-219 (222)
78 TIGR02673 FtsE cell division A 100.0 1.6E-45 3.5E-50 356.1 24.8 208 39-258 1-214 (214)
79 PRK15079 oligopeptide ABC tran 100.0 2.7E-45 5.8E-50 376.6 27.9 225 37-269 6-250 (331)
80 PRK13634 cbiO cobalt transport 100.0 4.1E-45 8.9E-50 369.5 28.6 219 39-269 2-234 (290)
81 cd03226 ABC_cobalt_CbiO_domain 100.0 1.3E-45 2.8E-50 354.7 23.6 203 41-260 1-205 (205)
82 PRK10895 lipopolysaccharide AB 100.0 2.2E-45 4.8E-50 361.8 25.3 219 39-269 3-225 (241)
83 PRK13651 cobalt transporter AT 100.0 3.2E-45 6.9E-50 372.3 27.0 220 39-269 2-253 (305)
84 cd03292 ABC_FtsE_transporter F 100.0 3.1E-45 6.8E-50 354.0 25.0 208 40-259 1-214 (214)
85 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4.7E-45 1E-49 358.4 26.6 217 39-269 1-220 (236)
86 PRK13635 cbiO cobalt transport 100.0 6.7E-45 1.5E-49 366.0 28.2 221 38-269 4-228 (279)
87 PRK13641 cbiO cobalt transport 100.0 5.9E-45 1.3E-49 367.9 27.7 219 39-269 2-233 (287)
88 TIGR00972 3a0107s01c2 phosphat 100.0 6.4E-45 1.4E-49 359.8 27.2 217 39-269 1-231 (247)
89 PRK11614 livF leucine/isoleuci 100.0 4.2E-45 9.1E-50 358.9 25.5 217 38-269 4-225 (237)
90 PRK10619 histidine/lysine/argi 100.0 6.8E-45 1.5E-49 361.8 27.3 219 38-269 4-240 (257)
91 PRK13631 cbiO cobalt transport 100.0 1.2E-44 2.6E-49 370.4 29.5 220 38-269 20-264 (320)
92 PRK11248 tauB taurine transpor 100.0 9.4E-45 2E-49 360.4 27.3 213 39-266 1-216 (255)
93 PRK11124 artP arginine transpo 100.0 7.1E-45 1.5E-49 358.3 26.2 217 39-268 2-228 (242)
94 cd03264 ABC_drug_resistance_li 100.0 4.7E-45 1E-49 352.3 24.4 209 40-263 1-211 (211)
95 PRK10070 glycine betaine trans 100.0 8.1E-45 1.7E-49 380.2 28.1 205 55-269 42-253 (400)
96 cd03257 ABC_NikE_OppD_transpor 100.0 6.6E-45 1.4E-49 355.0 25.6 215 39-263 1-228 (228)
97 PRK10908 cell division protein 100.0 8.3E-45 1.8E-49 353.3 26.2 211 39-261 1-217 (222)
98 TIGR03411 urea_trans_UrtD urea 100.0 8.5E-45 1.8E-49 357.7 26.6 221 38-268 1-229 (242)
99 PRK11300 livG leucine/isoleuci 100.0 8.1E-45 1.7E-49 360.6 26.6 223 38-269 4-242 (255)
100 PRK13636 cbiO cobalt transport 100.0 9.2E-45 2E-49 365.8 27.4 221 38-270 4-231 (283)
101 PRK10575 iron-hydroxamate tran 100.0 6.7E-45 1.4E-49 363.5 26.0 222 38-268 10-235 (265)
102 cd03262 ABC_HisP_GlnQ_permease 100.0 4.6E-45 9.9E-50 352.6 24.0 207 40-259 1-213 (213)
103 PRK13646 cbiO cobalt transport 100.0 9.1E-45 2E-49 366.3 27.0 220 39-269 2-234 (286)
104 PRK11231 fecE iron-dicitrate t 100.0 6.6E-45 1.4E-49 361.4 25.4 221 39-268 2-225 (255)
105 cd03234 ABCG_White The White s 100.0 1.1E-44 2.3E-49 353.6 26.3 218 39-263 3-226 (226)
106 PRK13648 cbiO cobalt transport 100.0 1.8E-44 3.9E-49 361.1 28.5 223 36-269 4-230 (269)
107 PRK11247 ssuB aliphatic sulfon 100.0 1E-44 2.2E-49 360.2 26.5 210 37-266 10-219 (257)
108 PRK14268 phosphate ABC transpo 100.0 1.4E-44 3E-49 359.8 27.4 221 34-269 7-241 (258)
109 TIGR02211 LolD_lipo_ex lipopro 100.0 1.1E-44 2.3E-49 352.1 25.9 211 39-260 1-220 (221)
110 PRK13632 cbiO cobalt transport 100.0 1E-44 2.3E-49 363.2 26.4 221 38-269 6-230 (271)
111 PRK11308 dppF dipeptide transp 100.0 1.5E-44 3.2E-49 370.7 27.9 223 38-269 4-243 (327)
112 PRK13548 hmuV hemin importer A 100.0 1.4E-44 3.1E-49 359.7 26.9 218 39-269 2-229 (258)
113 PRK13644 cbiO cobalt transport 100.0 1.2E-44 2.6E-49 363.3 26.5 218 39-269 1-223 (274)
114 cd03294 ABC_Pro_Gly_Bertaine T 100.0 6.3E-45 1.4E-49 364.4 24.4 217 41-269 26-249 (269)
115 PRK13638 cbiO cobalt transport 100.0 1.1E-44 2.5E-49 362.9 26.2 218 39-269 1-224 (271)
116 PRK14273 phosphate ABC transpo 100.0 1.5E-44 3.2E-49 358.7 26.7 220 36-269 4-237 (254)
117 cd03225 ABC_cobalt_CbiO_domain 100.0 9.1E-45 2E-49 350.1 24.4 207 41-258 1-211 (211)
118 PRK13652 cbiO cobalt transport 100.0 1.8E-44 3.9E-49 362.6 27.6 220 38-269 2-226 (277)
119 cd03235 ABC_Metallic_Cations A 100.0 5.2E-45 1.1E-49 352.5 22.6 211 41-263 1-213 (213)
120 PRK10253 iron-enterobactin tra 100.0 1.4E-44 3.1E-49 361.1 26.4 225 37-269 5-232 (265)
121 PRK13649 cbiO cobalt transport 100.0 3.9E-44 8.4E-49 360.7 28.8 219 39-269 2-233 (280)
122 PRK10584 putative ABC transpor 100.0 2.9E-44 6.3E-49 350.8 27.0 214 38-262 5-227 (228)
123 PRK14247 phosphate ABC transpo 100.0 2.4E-44 5.3E-49 356.2 26.7 220 38-269 2-233 (250)
124 PRK13639 cbiO cobalt transport 100.0 4.1E-44 9E-49 359.6 28.6 219 39-269 1-225 (275)
125 TIGR03005 ectoine_ehuA ectoine 100.0 2.4E-44 5.1E-49 356.8 26.4 219 40-269 1-235 (252)
126 PRK14267 phosphate ABC transpo 100.0 3.2E-44 6.9E-49 356.0 27.2 220 38-269 3-236 (253)
127 TIGR03410 urea_trans_UrtE urea 100.0 1.8E-44 3.8E-49 352.8 24.4 214 40-268 1-219 (230)
128 TIGR03873 F420-0_ABC_ATP propo 100.0 2.2E-44 4.7E-49 357.9 25.3 220 40-268 2-224 (256)
129 PRK11022 dppD dipeptide transp 100.0 3.9E-44 8.5E-49 367.6 27.6 222 39-269 3-242 (326)
130 TIGR02769 nickel_nikE nickel i 100.0 3.5E-44 7.6E-49 358.3 26.6 221 39-269 2-239 (265)
131 PRK14242 phosphate transporter 100.0 4E-44 8.6E-49 355.3 26.6 219 37-269 4-236 (253)
132 PRK15112 antimicrobial peptide 100.0 4.2E-44 9.1E-49 358.1 26.5 223 37-269 2-238 (267)
133 PRK09984 phosphonate/organopho 100.0 3.4E-44 7.5E-49 357.7 25.8 222 38-267 3-239 (262)
134 TIGR03740 galliderm_ABC gallid 100.0 2.9E-44 6.4E-49 349.7 24.6 209 40-266 1-209 (223)
135 cd03298 ABC_ThiQ_thiamine_tran 100.0 3.3E-44 7.2E-49 346.3 24.7 209 40-263 1-211 (211)
136 TIGR01978 sufC FeS assembly AT 100.0 3.8E-44 8.1E-49 353.1 25.6 220 40-268 1-232 (243)
137 PRK13633 cobalt transporter AT 100.0 4.5E-44 9.7E-49 360.3 26.3 220 38-269 3-232 (280)
138 PRK09473 oppD oligopeptide tra 100.0 6.8E-44 1.5E-48 366.2 28.0 224 37-269 10-250 (330)
139 PRK13640 cbiO cobalt transport 100.0 5.7E-44 1.2E-48 359.8 26.6 221 37-269 3-231 (282)
140 PRK10744 pstB phosphate transp 100.0 9.4E-44 2E-48 354.2 27.1 222 34-269 8-243 (260)
141 TIGR03415 ABC_choXWV_ATP choli 100.0 7.1E-44 1.5E-48 370.6 27.3 208 52-269 35-253 (382)
142 PRK10771 thiQ thiamine transpo 100.0 6.8E-44 1.5E-48 349.3 25.5 216 39-269 1-218 (232)
143 PRK14250 phosphate ABC transpo 100.0 6.3E-44 1.4E-48 351.5 25.4 213 39-269 3-220 (241)
144 PRK11144 modC molybdate transp 100.0 5.7E-44 1.2E-48 370.2 26.1 210 39-269 1-217 (352)
145 PRK13645 cbiO cobalt transport 100.0 1E-43 2.3E-48 359.2 27.1 222 38-269 5-239 (289)
146 PRK13547 hmuV hemin importer A 100.0 6.7E-44 1.4E-48 357.2 25.3 221 39-268 1-242 (272)
147 PRK14241 phosphate transporter 100.0 1.3E-43 2.9E-48 352.7 27.0 219 38-269 3-241 (258)
148 PRK10762 D-ribose transporter 100.0 7.1E-44 1.5E-48 386.6 26.9 223 38-269 3-229 (501)
149 PRK14270 phosphate ABC transpo 100.0 1.5E-43 3.3E-48 350.8 27.0 219 37-269 2-234 (251)
150 PRK15093 antimicrobial peptide 100.0 1.3E-43 2.8E-48 364.6 27.4 226 38-269 2-247 (330)
151 COG4175 ProV ABC-type proline/ 100.0 1.8E-44 4E-49 352.5 19.9 204 56-269 43-253 (386)
152 PRK14245 phosphate ABC transpo 100.0 1.3E-43 2.8E-48 351.1 26.3 218 38-269 2-233 (250)
153 PRK14235 phosphate transporter 100.0 2E-43 4.4E-48 353.1 27.8 222 35-269 15-250 (267)
154 PRK14274 phosphate ABC transpo 100.0 1.8E-43 3.9E-48 351.9 27.1 219 37-269 10-242 (259)
155 TIGR01277 thiQ thiamine ABC tr 100.0 1.7E-43 3.7E-48 342.0 25.9 211 40-264 1-212 (213)
156 cd03300 ABC_PotA_N PotA is an 100.0 1.7E-43 3.6E-48 346.6 26.1 217 40-269 1-219 (232)
157 TIGR02142 modC_ABC molybdenum 100.0 1.1E-43 2.5E-48 368.4 26.3 210 44-269 4-220 (354)
158 cd03299 ABC_ModC_like Archeal 100.0 2.2E-43 4.7E-48 346.5 26.6 216 40-269 1-218 (235)
159 TIGR00968 3a0106s01 sulfate AB 100.0 1.5E-43 3.2E-48 348.1 25.4 218 40-269 1-219 (237)
160 cd03267 ABC_NatA_like Similar 100.0 1.4E-43 2.9E-48 348.2 24.9 203 51-263 31-236 (236)
161 PRK14248 phosphate ABC transpo 100.0 2.8E-43 6.1E-48 352.3 27.1 219 37-269 19-251 (268)
162 PRK14256 phosphate ABC transpo 100.0 3.5E-43 7.6E-48 348.4 27.4 218 39-269 4-235 (252)
163 PRK14237 phosphate transporter 100.0 3.1E-43 6.7E-48 351.9 27.1 222 34-269 15-250 (267)
164 PRK11701 phnK phosphonate C-P 100.0 3E-43 6.6E-48 350.1 26.8 221 38-269 5-240 (258)
165 PRK13642 cbiO cobalt transport 100.0 2.9E-43 6.2E-48 353.9 26.9 219 39-269 4-228 (277)
166 cd03297 ABC_ModC_molybdenum_tr 100.0 2.4E-43 5.1E-48 341.2 25.3 205 40-263 2-214 (214)
167 PRK14239 phosphate transporter 100.0 3.5E-43 7.7E-48 348.2 27.1 218 38-269 4-235 (252)
168 PRK14259 phosphate ABC transpo 100.0 2.8E-43 6.1E-48 352.5 26.2 216 38-269 12-252 (269)
169 PRK14269 phosphate ABC transpo 100.0 3.4E-43 7.4E-48 347.4 26.3 218 39-269 2-229 (246)
170 COG4559 ABC-type hemin transpo 100.0 6.8E-44 1.5E-48 331.3 19.8 221 39-270 1-230 (259)
171 COG0444 DppD ABC-type dipeptid 100.0 1.7E-43 3.7E-48 350.5 23.7 223 39-269 1-242 (316)
172 PRK14262 phosphate ABC transpo 100.0 4.4E-43 9.6E-48 347.2 26.7 218 38-269 2-233 (250)
173 cd03233 ABC_PDR_domain1 The pl 100.0 3.1E-43 6.7E-48 337.6 24.6 193 39-263 3-202 (202)
174 PRK14254 phosphate ABC transpo 100.0 8.1E-43 1.8E-47 351.9 28.7 217 36-268 36-267 (285)
175 PRK14272 phosphate ABC transpo 100.0 4.8E-43 1E-47 347.3 26.6 218 39-269 4-235 (252)
176 PRK13549 xylose transporter AT 100.0 3E-43 6.5E-48 382.2 27.3 222 38-269 4-231 (506)
177 PRK09700 D-allose transporter 100.0 2.6E-43 5.7E-48 383.0 26.5 223 38-269 4-233 (510)
178 PRK14240 phosphate transporter 100.0 6.8E-43 1.5E-47 345.9 27.0 217 39-269 3-233 (250)
179 PRK15439 autoinducer 2 ABC tra 100.0 4.1E-43 8.9E-48 381.3 27.7 216 37-269 9-228 (510)
180 cd03252 ABCC_Hemolysin The ABC 100.0 1.6E-43 3.5E-48 347.6 21.5 214 40-269 1-224 (237)
181 PRK14253 phosphate ABC transpo 100.0 7.9E-43 1.7E-47 345.2 26.3 217 38-268 2-231 (249)
182 PRK14251 phosphate ABC transpo 100.0 9.5E-43 2.1E-47 345.1 26.8 218 38-269 3-234 (251)
183 PRK14249 phosphate ABC transpo 100.0 1.1E-42 2.4E-47 344.7 27.0 219 37-269 2-234 (251)
184 TIGR03608 L_ocin_972_ABC putat 100.0 4.2E-43 9.2E-48 337.1 23.3 199 42-254 1-206 (206)
185 PRK14236 phosphate transporter 100.0 1.3E-42 2.7E-47 348.4 27.6 222 34-269 20-255 (272)
186 PRK10418 nikD nickel transport 100.0 8.4E-43 1.8E-47 346.2 26.0 216 39-269 4-229 (254)
187 PRK14271 phosphate ABC transpo 100.0 1.4E-42 3E-47 348.7 27.5 220 36-269 18-250 (276)
188 PRK15056 manganese/iron transp 100.0 7.7E-43 1.7E-47 349.9 25.6 221 39-268 6-228 (272)
189 PRK14275 phosphate ABC transpo 100.0 1.1E-42 2.4E-47 351.1 26.8 220 36-269 36-269 (286)
190 PRK14238 phosphate transporter 100.0 1.1E-42 2.4E-47 348.6 26.4 218 38-269 23-254 (271)
191 PRK10419 nikE nickel transport 100.0 1.2E-42 2.5E-47 347.8 26.3 223 38-269 2-240 (268)
192 COG1129 MglA ABC-type sugar tr 100.0 6.1E-43 1.3E-47 367.3 25.1 222 37-267 6-232 (500)
193 PRK14261 phosphate ABC transpo 100.0 1.5E-42 3.3E-47 344.1 26.7 219 37-269 4-236 (253)
194 TIGR02982 heterocyst_DevA ABC 100.0 1.2E-42 2.7E-47 337.7 25.4 210 40-259 2-219 (220)
195 TIGR02323 CP_lyasePhnK phospho 100.0 1.2E-42 2.6E-47 344.7 25.8 221 38-269 2-237 (253)
196 PRK14255 phosphate ABC transpo 100.0 2E-42 4.4E-47 342.9 27.3 219 37-269 3-235 (252)
197 PRK14258 phosphate ABC transpo 100.0 2.2E-42 4.7E-47 344.6 27.6 222 36-269 4-244 (261)
198 PRK10247 putative ABC transpor 100.0 8E-43 1.7E-47 340.2 24.0 214 36-265 4-222 (225)
199 PRK14244 phosphate ABC transpo 100.0 1.4E-42 3.1E-47 343.8 25.8 218 39-269 5-236 (251)
200 PRK14260 phosphate ABC transpo 100.0 1.6E-42 3.5E-47 345.2 26.2 218 38-269 6-242 (259)
201 PRK13543 cytochrome c biogenes 100.0 1.9E-42 4E-47 335.1 25.7 203 38-256 10-212 (214)
202 PRK10261 glutathione transport 100.0 1.5E-42 3.3E-47 384.7 28.0 224 37-269 311-552 (623)
203 TIGR01184 ntrCD nitrate transp 100.0 1.1E-42 2.3E-47 340.5 23.7 202 57-268 1-202 (230)
204 COG1123 ATPase components of v 100.0 7.9E-43 1.7E-47 368.7 24.3 225 36-269 277-518 (539)
205 PRK14243 phosphate transporter 100.0 2E-42 4.3E-47 345.5 25.6 216 38-269 9-247 (264)
206 cd03251 ABCC_MsbA MsbA is an e 100.0 6.2E-43 1.3E-47 342.6 20.9 220 40-270 1-225 (234)
207 PRK13538 cytochrome c biogenes 100.0 2E-42 4.3E-47 332.4 23.7 200 39-254 1-202 (204)
208 PRK14246 phosphate ABC transpo 100.0 3.9E-42 8.4E-47 342.0 26.5 221 36-269 7-240 (257)
209 CHL00131 ycf16 sulfate ABC tra 100.0 5.5E-42 1.2E-46 339.7 27.3 221 38-267 6-238 (252)
210 COG4181 Predicted ABC-type tra 100.0 5.4E-43 1.2E-47 315.1 18.1 212 39-261 6-226 (228)
211 TIGR02770 nickel_nikD nickel i 100.0 2.1E-42 4.5E-47 338.4 23.8 204 56-269 1-214 (230)
212 PRK14265 phosphate ABC transpo 100.0 3.8E-42 8.1E-47 345.2 26.0 216 38-269 19-257 (274)
213 cd03213 ABCG_EPDR ABCG transpo 100.0 3.8E-42 8.3E-47 328.0 24.5 187 38-263 2-194 (194)
214 TIGR02633 xylG D-xylose ABC tr 100.0 3.4E-42 7.3E-47 373.5 27.3 221 39-268 1-228 (500)
215 COG4598 HisP ABC-type histidin 100.0 1.8E-43 3.9E-48 320.3 14.4 221 37-269 4-240 (256)
216 PRK11288 araG L-arabinose tran 100.0 3.9E-42 8.5E-47 373.0 27.7 218 38-265 3-224 (501)
217 cd03245 ABCC_bacteriocin_expor 100.0 2.5E-42 5.5E-47 335.2 23.1 205 39-263 2-220 (220)
218 PRK14263 phosphate ABC transpo 100.0 7.6E-42 1.6E-46 340.7 27.0 217 37-269 6-244 (261)
219 TIGR01257 rim_protein retinal- 100.0 2.8E-42 6.2E-47 411.2 28.1 226 37-273 1935-2162(2272)
220 COG4525 TauB ABC-type taurine 100.0 3E-42 6.4E-47 316.4 21.8 217 38-266 2-220 (259)
221 PRK03695 vitamin B12-transport 100.0 3.4E-42 7.3E-47 340.7 23.4 209 41-268 2-220 (248)
222 PRK14257 phosphate ABC transpo 100.0 1.2E-41 2.5E-46 349.4 27.7 220 38-269 79-312 (329)
223 cd03231 ABC_CcmA_heme_exporter 100.0 4.4E-42 9.6E-47 329.3 22.9 196 40-254 1-198 (201)
224 PRK10261 glutathione transport 100.0 5.4E-42 1.2E-46 380.3 27.0 225 36-269 9-257 (623)
225 COG1123 ATPase components of v 100.0 4.5E-42 9.7E-47 363.0 24.9 224 38-270 4-244 (539)
226 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.8E-42 4E-47 340.3 20.5 215 40-270 1-226 (238)
227 PRK14266 phosphate ABC transpo 100.0 1E-41 2.2E-46 337.5 25.9 217 39-269 3-233 (250)
228 TIGR03269 met_CoM_red_A2 methy 100.0 5.8E-42 1.2E-46 373.4 26.5 222 37-269 277-516 (520)
229 TIGR01257 rim_protein retinal- 100.0 7.7E-42 1.7E-46 407.5 29.4 225 36-272 925-1151(2272)
230 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 5.3E-42 1.1E-46 334.3 23.0 202 40-263 23-224 (224)
231 PRK10982 galactose/methyl gala 100.0 5.5E-42 1.2E-46 371.1 25.6 217 42-268 1-221 (491)
232 PRK13549 xylose transporter AT 100.0 5.4E-42 1.2E-46 372.3 25.5 225 37-268 257-492 (506)
233 cd03232 ABC_PDR_domain2 The pl 100.0 1E-41 2.2E-46 324.6 24.0 185 39-263 3-192 (192)
234 PRK09580 sufC cysteine desulfu 100.0 2.1E-41 4.6E-46 334.6 26.8 221 39-268 1-233 (248)
235 cd03254 ABCC_Glucan_exporter_l 100.0 7.3E-42 1.6E-46 334.0 22.9 214 39-269 2-225 (229)
236 PRK14264 phosphate ABC transpo 100.0 2.8E-41 6.1E-46 343.9 27.9 222 37-269 43-288 (305)
237 COG2274 SunT ABC-type bacterio 100.0 3.1E-42 6.8E-47 381.1 22.0 215 36-270 468-696 (709)
238 PRK14252 phosphate ABC transpo 100.0 2.8E-41 6E-46 337.3 26.8 219 37-269 14-248 (265)
239 TIGR03269 met_CoM_red_A2 methy 100.0 1.2E-41 2.7E-46 370.8 26.0 219 40-271 1-259 (520)
240 PRK15134 microcin C ABC transp 100.0 9.7E-42 2.1E-46 372.3 25.1 224 37-269 273-514 (529)
241 PRK09544 znuC high-affinity zi 100.0 1.3E-41 2.9E-46 336.9 23.6 203 38-269 3-208 (251)
242 PRK13539 cytochrome c biogenes 100.0 1.6E-41 3.4E-46 327.0 23.3 199 39-256 2-200 (207)
243 PRK15134 microcin C ABC transp 100.0 1.7E-41 3.6E-46 370.4 26.4 222 38-269 4-245 (529)
244 PRK09700 D-allose transporter 100.0 1.4E-41 2.9E-46 369.6 25.1 220 37-267 263-495 (510)
245 cd03244 ABCC_MRP_domain2 Domai 100.0 1.1E-41 2.4E-46 330.9 21.9 205 39-264 2-220 (221)
246 TIGR01189 ccmA heme ABC export 100.0 1.8E-41 3.8E-46 324.3 22.7 195 40-253 1-197 (198)
247 COG4604 CeuD ABC-type enteroch 100.0 6.3E-43 1.4E-47 321.3 11.7 222 39-270 1-225 (252)
248 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.4E-41 3E-46 340.5 22.2 210 39-270 2-225 (275)
249 cd03253 ABCC_ATM1_transporter 100.0 1.1E-41 2.5E-46 334.1 21.1 213 40-269 1-223 (236)
250 COG3845 ABC-type uncharacteriz 100.0 2E-41 4.3E-46 349.3 23.6 217 38-264 3-223 (501)
251 cd03230 ABC_DR_subfamily_A Thi 100.0 3.1E-41 6.7E-46 315.9 22.1 171 40-259 1-173 (173)
252 TIGR02324 CP_lyasePhnL phospho 100.0 4.9E-41 1.1E-45 327.1 24.3 205 39-254 1-222 (224)
253 PRK13540 cytochrome c biogenes 100.0 3.8E-41 8.2E-46 322.6 22.3 195 39-252 1-197 (200)
254 TIGR02633 xylG D-xylose ABC tr 100.0 3.9E-41 8.5E-46 365.2 25.1 223 37-267 255-489 (500)
255 cd03248 ABCC_TAP TAP, the Tran 100.0 1.3E-41 2.9E-46 331.6 19.0 213 36-259 8-226 (226)
256 PRK10938 putative molybdenum t 100.0 2.3E-41 4.9E-46 366.2 22.7 210 39-269 3-223 (490)
257 PRK13546 teichoic acids export 100.0 1.6E-40 3.5E-45 331.3 27.0 211 39-270 4-232 (264)
258 cd03215 ABC_Carb_Monos_II This 100.0 5.3E-41 1.2E-45 316.9 22.3 173 38-259 3-182 (182)
259 PRK11174 cysteine/glutathione 100.0 2.5E-41 5.4E-46 373.7 23.3 209 39-269 349-571 (588)
260 cd03217 ABC_FeS_Assembly ABC-t 100.0 6.1E-41 1.3E-45 321.2 22.5 188 40-272 1-195 (200)
261 PRK11176 lipid transporter ATP 100.0 5.6E-41 1.2E-45 370.5 25.1 214 38-270 340-567 (582)
262 cd03288 ABCC_SUR2 The SUR doma 100.0 5.3E-41 1.1E-45 333.9 22.4 222 31-269 11-242 (257)
263 COG4161 ArtP ABC-type arginine 100.0 2.6E-41 5.6E-46 301.4 17.7 216 39-267 2-227 (242)
264 cd03229 ABC_Class3 This class 100.0 6.4E-41 1.4E-45 315.2 21.5 173 40-258 1-178 (178)
265 cd03369 ABCC_NFT1 Domain 2 of 100.0 9.9E-41 2.1E-45 321.2 23.3 200 38-265 5-207 (207)
266 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 4.5E-41 9.7E-46 377.8 23.6 209 38-269 450-672 (686)
267 COG4988 CydD ABC-type transpor 100.0 5.6E-41 1.2E-45 353.4 22.5 210 40-270 321-543 (559)
268 cd03246 ABCC_Protease_Secretio 100.0 9.3E-41 2E-45 312.7 21.5 170 40-259 1-173 (173)
269 cd03247 ABCC_cytochrome_bd The 100.0 8.8E-41 1.9E-45 314.2 21.3 176 40-263 1-178 (178)
270 PRK13545 tagH teichoic acids e 100.0 3.9E-40 8.4E-45 349.6 28.1 213 37-270 19-232 (549)
271 PRK10762 D-ribose transporter 100.0 1.4E-40 2.9E-45 361.0 25.0 218 37-268 255-482 (501)
272 TIGR01166 cbiO cobalt transpor 100.0 1.2E-40 2.6E-45 316.4 21.4 179 52-240 3-187 (190)
273 KOG0058|consensus 100.0 3.8E-41 8.2E-46 360.8 19.8 216 37-270 463-691 (716)
274 cd03214 ABC_Iron-Siderophores_ 100.0 6.4E-41 1.4E-45 315.8 18.9 176 41-263 1-180 (180)
275 PRK10790 putative multidrug tr 100.0 1.2E-40 2.6E-45 368.6 24.1 210 38-269 339-562 (592)
276 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 7.9E-41 1.7E-45 377.2 23.0 211 38-270 476-700 (710)
277 PRK11288 araG L-arabinose tran 100.0 1.4E-40 3.1E-45 360.8 23.9 218 38-268 256-483 (501)
278 PRK11160 cysteine/glutathione 100.0 1.4E-40 3.1E-45 366.3 24.0 213 38-270 337-562 (574)
279 TIGR01842 type_I_sec_PrtD type 100.0 1.6E-40 3.5E-45 363.8 23.7 217 38-269 315-541 (544)
280 TIGR03771 anch_rpt_ABC anchore 100.0 2.3E-40 5E-45 322.5 21.8 198 62-269 1-200 (223)
281 TIGR03375 type_I_sec_LssB type 100.0 1.5E-40 3.1E-45 374.1 23.4 213 38-270 462-688 (694)
282 COG4148 ModC ABC-type molybdat 100.0 4E-41 8.6E-46 324.1 14.8 198 57-270 14-218 (352)
283 COG4987 CydC ABC-type transpor 100.0 6.7E-41 1.4E-45 347.8 17.5 212 39-270 336-561 (573)
284 PRK15439 autoinducer 2 ABC tra 100.0 4.6E-40 9.9E-45 357.4 24.7 217 37-268 266-490 (510)
285 TIGR01193 bacteriocin_ABC ABC- 100.0 2.6E-40 5.7E-45 372.8 23.1 212 38-270 472-697 (708)
286 KOG0055|consensus 100.0 2.4E-39 5.2E-44 364.4 29.5 213 38-270 349-576 (1228)
287 COG1119 ModF ABC-type molybden 100.0 2.6E-40 5.6E-45 315.2 17.7 221 36-264 28-256 (257)
288 COG0396 sufC Cysteine desulfur 100.0 1.7E-39 3.7E-44 306.2 23.0 230 38-279 2-242 (251)
289 PRK10535 macrolide transporter 100.0 9.3E-39 2E-43 355.7 32.7 220 38-269 3-231 (648)
290 TIGR00958 3a01208 Conjugate Tr 100.0 6.7E-40 1.5E-44 369.0 22.2 211 38-270 477-702 (711)
291 PRK13657 cyclic beta-1,2-gluca 100.0 9E-40 2E-44 361.2 22.6 211 38-269 333-557 (588)
292 COG4586 ABC-type uncharacteriz 100.0 2.6E-40 5.5E-45 317.9 15.4 210 54-273 37-249 (325)
293 COG1132 MdlB ABC-type multidru 100.0 7.6E-40 1.6E-44 360.3 21.3 214 38-270 327-552 (567)
294 PRK10938 putative molybdenum t 100.0 1.4E-39 3E-44 352.3 22.9 221 36-264 257-486 (490)
295 TIGR01187 potA spermidine/putr 100.0 1.7E-39 3.7E-44 333.4 22.5 188 72-269 1-189 (325)
296 TIGR02203 MsbA_lipidA lipid A 100.0 1.5E-39 3.2E-44 358.3 23.4 213 38-269 329-555 (571)
297 COG4619 ABC-type uncharacteriz 100.0 9.9E-41 2.1E-45 299.5 11.1 205 40-259 4-212 (223)
298 cd03290 ABCC_SUR1_N The SUR do 100.0 2.4E-39 5.3E-44 314.0 21.7 197 41-258 2-218 (218)
299 COG4172 ABC-type uncharacteriz 100.0 3.6E-39 7.9E-44 323.6 23.5 225 36-269 273-515 (534)
300 PRK13541 cytochrome c biogenes 100.0 2.7E-39 5.9E-44 308.5 21.7 192 39-251 1-192 (195)
301 cd03216 ABC_Carb_Monos_I This 100.0 4.1E-39 8.8E-44 298.8 22.1 158 40-261 1-162 (163)
302 PRK10789 putative multidrug tr 100.0 2.7E-39 5.9E-44 355.9 24.6 212 38-269 312-537 (569)
303 cd03250 ABCC_MRP_domain1 Domai 100.0 2E-39 4.4E-44 311.4 20.5 193 40-258 1-204 (204)
304 cd03228 ABCC_MRP_Like The MRP 100.0 2.6E-39 5.6E-44 302.4 20.6 168 40-258 1-171 (171)
305 KOG0057|consensus 100.0 1.2E-39 2.5E-44 338.8 19.5 210 39-270 351-574 (591)
306 PRK10982 galactose/methyl gala 100.0 4.2E-39 9E-44 348.6 24.8 219 37-266 248-476 (491)
307 TIGR01846 type_I_sec_HlyB type 100.0 2E-39 4.3E-44 364.8 22.8 213 38-270 454-680 (694)
308 COG4674 Uncharacterized ABC-ty 100.0 6.6E-40 1.4E-44 300.9 15.2 222 38-269 4-234 (249)
309 TIGR02204 MsbA_rel ABC transpo 100.0 3.2E-39 6.8E-44 356.1 22.6 212 38-269 336-562 (576)
310 PRK15064 ABC transporter ATP-b 100.0 1E-38 2.3E-43 348.5 25.3 211 39-269 1-241 (530)
311 PRK11819 putative ABC transpor 100.0 4.3E-39 9.3E-44 353.2 22.3 213 37-269 4-249 (556)
312 COG4608 AppF ABC-type oligopep 100.0 3.9E-39 8.5E-44 313.2 19.2 188 38-269 3-198 (268)
313 TIGR01192 chvA glucan exporter 100.0 6.5E-39 1.4E-43 353.8 23.5 215 38-269 333-557 (585)
314 PRK15177 Vi polysaccharide exp 100.0 9E-39 2E-43 309.2 20.9 194 55-273 1-195 (213)
315 PRK15064 ABC transporter ATP-b 100.0 1.1E-38 2.3E-43 348.4 23.9 203 38-269 318-524 (530)
316 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.7E-38 5.8E-43 317.9 24.7 201 34-269 34-246 (282)
317 cd03223 ABCD_peroxisomal_ALDP 100.0 2E-38 4.3E-43 295.0 20.9 163 40-257 1-163 (166)
318 cd03237 ABC_RNaseL_inhibitor_d 100.0 3E-38 6.4E-43 312.0 23.3 181 56-259 9-194 (246)
319 COG4618 ArpD ABC-type protease 100.0 9.5E-39 2.1E-43 329.0 19.6 225 34-273 329-563 (580)
320 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.6E-38 7.9E-43 345.7 24.6 213 38-270 3-248 (552)
321 PRK11819 putative ABC transpor 100.0 9.3E-38 2E-42 342.6 24.7 204 37-266 322-529 (556)
322 PLN03130 ABC transporter C fam 100.0 6.5E-38 1.4E-42 376.0 24.6 211 39-270 1237-1461(1622)
323 PLN03232 ABC transporter C fam 100.0 5.9E-38 1.3E-42 375.9 23.7 210 39-269 1234-1457(1495)
324 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.3E-37 2.9E-42 341.2 24.3 203 37-265 320-526 (552)
325 PRK13409 putative ATPase RIL; 100.0 1.2E-37 2.6E-42 342.0 23.8 201 37-266 338-538 (590)
326 PTZ00265 multidrug resistance 100.0 5.2E-38 1.1E-42 373.7 22.3 213 38-269 1164-1451(1466)
327 TIGR02857 CydD thiol reductant 100.0 6.9E-38 1.5E-42 342.1 21.1 197 38-254 319-529 (529)
328 PRK10522 multidrug transporter 100.0 1.6E-37 3.4E-42 340.4 23.7 201 38-262 321-530 (547)
329 TIGR02868 CydC thiol reductant 100.0 1.3E-37 2.8E-42 340.0 20.1 184 38-240 333-529 (529)
330 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.4E-37 7.4E-42 338.2 23.5 203 38-262 336-551 (555)
331 PRK10636 putative ABC transpor 100.0 6.8E-37 1.5E-41 340.0 24.4 203 37-269 310-516 (638)
332 PTZ00243 ABC transporter; Prov 100.0 3.2E-37 6.9E-42 369.5 23.1 210 39-269 1308-1532(1560)
333 KOG0055|consensus 100.0 2E-37 4.3E-42 348.9 20.1 220 35-270 983-1213(1228)
334 TIGR00957 MRP_assoc_pro multi 100.0 4.6E-37 9.9E-42 368.7 24.2 211 39-270 1284-1508(1522)
335 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.5E-37 7.5E-42 305.7 19.3 201 43-263 4-220 (255)
336 COG4172 ABC-type uncharacteriz 100.0 6.3E-37 1.4E-41 307.5 20.9 224 37-269 4-246 (534)
337 PRK11147 ABC transporter ATPas 100.0 1.5E-36 3.3E-41 337.7 24.9 200 37-262 317-519 (635)
338 KOG0056|consensus 100.0 2.9E-37 6.3E-42 315.0 15.9 218 38-270 536-761 (790)
339 COG1101 PhnK ABC-type uncharac 100.0 1.2E-36 2.5E-41 283.7 18.3 220 39-265 1-233 (263)
340 PTZ00265 multidrug resistance 100.0 1E-36 2.2E-41 362.7 22.5 210 39-257 382-655 (1466)
341 COG4167 SapF ABC-type antimicr 100.0 1.3E-36 2.9E-41 276.3 18.0 223 38-269 3-238 (267)
342 KOG0059|consensus 100.0 5.5E-37 1.2E-41 350.9 19.0 224 38-273 563-790 (885)
343 TIGR01271 CFTR_protein cystic 100.0 2E-36 4.4E-41 362.2 23.5 209 39-269 1217-1439(1490)
344 PRK10636 putative ABC transpor 100.0 2.8E-36 6E-41 335.2 22.6 209 39-268 1-234 (638)
345 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 4.9E-36 1.1E-40 272.5 19.7 144 40-258 1-144 (144)
346 PLN03073 ABC transporter F fam 100.0 6.2E-36 1.3E-40 334.2 24.4 205 37-268 506-712 (718)
347 COG4133 CcmA ABC-type transpor 100.0 1.7E-36 3.8E-41 277.6 14.9 189 39-242 2-192 (209)
348 COG1134 TagH ABC-type polysacc 100.0 2E-35 4.4E-40 282.1 22.5 202 53-274 39-240 (249)
349 PRK11147 ABC transporter ATPas 100.0 1.2E-35 2.5E-40 330.6 22.6 209 39-269 3-242 (635)
350 cd03222 ABC_RNaseL_inhibitor T 100.0 1.4E-35 3.1E-40 277.9 19.5 156 43-268 4-161 (177)
351 TIGR00954 3a01203 Peroxysomal 100.0 1.6E-35 3.6E-40 330.1 22.1 194 38-255 450-652 (659)
352 cd03238 ABC_UvrA The excision 100.0 3.9E-35 8.4E-40 274.7 19.3 159 53-261 7-168 (176)
353 PRK13409 putative ATPase RIL; 100.0 4.2E-35 9E-40 321.9 18.0 190 45-257 79-287 (590)
354 COG4107 PhnK ABC-type phosphon 100.0 1.5E-34 3.3E-39 261.0 18.0 218 36-269 3-240 (258)
355 cd00267 ABC_ATPase ABC (ATP-bi 100.0 3.2E-34 6.8E-39 264.1 20.5 153 42-258 2-157 (157)
356 PLN03232 ABC transporter C fam 100.0 3.1E-34 6.7E-39 343.9 21.8 203 38-270 613-828 (1495)
357 PLN03130 ABC transporter C fam 100.0 6.5E-34 1.4E-38 341.7 22.1 201 38-269 613-827 (1622)
358 COG4136 ABC-type uncharacteriz 100.0 5.3E-34 1.2E-38 251.8 14.9 189 39-240 2-195 (213)
359 TIGR00957 MRP_assoc_pro multi 100.0 1.4E-33 3E-38 338.7 23.4 206 39-270 636-850 (1522)
360 COG0488 Uup ATPase components 100.0 1.1E-33 2.5E-38 304.0 18.5 209 38-267 2-237 (530)
361 COG1129 MglA ABC-type sugar tr 100.0 7.2E-33 1.6E-37 291.3 23.9 219 36-267 260-487 (500)
362 COG5265 ATM1 ABC-type transpor 100.0 8.9E-34 1.9E-38 286.6 15.6 213 39-270 262-486 (497)
363 TIGR01271 CFTR_protein cystic 100.0 9.5E-33 2.1E-37 330.7 23.7 189 54-269 439-635 (1490)
364 PLN03073 ABC transporter F fam 100.0 2.3E-33 5.1E-38 313.5 16.7 218 37-268 175-429 (718)
365 PTZ00243 ABC transporter; Prov 100.0 2.1E-32 4.5E-37 328.2 21.8 196 53-269 672-869 (1560)
366 cd03270 ABC_UvrA_I The excisio 100.0 9E-32 2E-36 262.6 20.9 192 52-263 6-226 (226)
367 PF00005 ABC_tran: ABC transpo 100.0 2.1E-32 4.5E-37 245.6 13.6 130 57-203 1-137 (137)
368 COG4778 PhnL ABC-type phosphon 100.0 4.1E-32 9E-37 244.4 13.4 207 39-256 4-227 (235)
369 KOG0054|consensus 100.0 2.9E-31 6.2E-36 305.6 21.6 217 33-270 1129-1362(1381)
370 KOG0054|consensus 100.0 1.9E-30 4E-35 298.9 22.1 205 36-270 515-731 (1381)
371 cd03271 ABC_UvrA_II The excisi 100.0 2.5E-30 5.4E-35 256.3 19.4 193 55-265 9-261 (261)
372 COG0488 Uup ATPase components 100.0 4.9E-30 1.1E-34 276.0 21.2 203 35-267 317-522 (530)
373 COG3845 ABC-type uncharacteriz 100.0 1.8E-29 3.8E-34 261.0 24.0 224 37-268 255-490 (501)
374 cd03278 ABC_SMC_barmotin Barmo 100.0 4.8E-30 1E-34 245.2 13.4 165 57-256 12-190 (197)
375 COG4138 BtuD ABC-type cobalami 100.0 1E-30 2.3E-35 236.4 6.3 208 39-269 3-220 (248)
376 cd03272 ABC_SMC3_euk Eukaryoti 100.0 4.1E-29 8.9E-34 246.1 15.3 196 40-255 4-234 (243)
377 cd03274 ABC_SMC4_euk Eukaryoti 100.0 2E-29 4.4E-34 243.5 4.4 190 39-256 5-204 (212)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.9 7.5E-28 1.6E-32 238.7 11.3 178 67-255 25-242 (251)
379 cd03279 ABC_sbcCD SbcCD and ot 99.9 9.5E-27 2E-31 225.2 16.1 192 39-258 5-210 (213)
380 COG4615 PvdE ABC-type sideroph 99.9 1.6E-27 3.6E-32 239.1 10.2 202 37-263 320-530 (546)
381 cd03240 ABC_Rad50 The catalyti 99.9 5.3E-27 1.2E-31 225.4 12.1 168 59-257 15-199 (204)
382 PRK00349 uvrA excinuclease ABC 99.9 8.8E-26 1.9E-30 256.7 21.4 125 127-269 792-926 (943)
383 PRK00635 excinuclease ABC subu 99.9 1.4E-25 3E-30 265.0 22.9 215 38-269 599-905 (1809)
384 COG4178 ABC-type uncharacteriz 99.9 5.2E-25 1.1E-29 236.3 18.7 192 37-255 390-587 (604)
385 COG4170 SapD ABC-type antimicr 99.9 1E-25 2.2E-30 209.4 11.0 227 38-270 2-248 (330)
386 KOG0927|consensus 99.9 1.1E-25 2.4E-30 234.0 11.6 204 34-265 384-591 (614)
387 TIGR00630 uvra excinuclease AB 99.9 3E-24 6.5E-29 243.9 22.4 125 126-268 789-923 (924)
388 KOG0927|consensus 99.9 3.6E-25 7.8E-30 230.2 13.0 215 38-269 74-308 (614)
389 COG1245 Predicted ATPase, RNas 99.9 1.3E-24 2.8E-29 221.8 16.5 189 39-255 342-530 (591)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.8E-24 3.9E-29 206.9 15.3 171 57-258 12-192 (198)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 7.4E-24 1.6E-28 209.6 11.0 176 65-256 21-233 (247)
392 KOG0060|consensus 99.9 1.8E-22 3.9E-27 211.5 19.5 199 38-256 432-641 (659)
393 KOG2355|consensus 99.9 2.5E-22 5.4E-27 186.4 16.9 212 38-270 12-237 (291)
394 KOG0062|consensus 99.9 2.1E-23 4.7E-28 215.9 8.2 202 38-268 79-283 (582)
395 KOG0066|consensus 99.9 1.3E-22 2.9E-27 205.5 13.5 177 36-241 583-762 (807)
396 KOG0062|consensus 99.9 6.1E-22 1.3E-26 205.2 15.1 204 32-261 355-559 (582)
397 cd03280 ABC_MutS2 MutS2 homolo 99.9 9.7E-22 2.1E-26 188.4 10.2 146 57-263 17-172 (200)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.9 6.2E-21 1.4E-25 184.5 14.3 86 167-258 119-211 (213)
399 COG1245 Predicted ATPase, RNas 99.9 1E-21 2.3E-26 200.7 9.2 171 64-256 97-288 (591)
400 cd03239 ABC_SMC_head The struc 99.8 2.4E-19 5.2E-24 168.6 14.8 74 175-256 95-172 (178)
401 cd03241 ABC_RecN RecN ATPase i 99.8 9.3E-19 2E-23 176.0 15.7 76 174-258 170-249 (276)
402 cd03283 ABC_MutS-like MutS-lik 99.8 2.3E-19 5E-24 171.7 9.5 147 54-254 14-163 (199)
403 cd03285 ABC_MSH2_euk MutS2 hom 99.8 2.6E-19 5.7E-24 174.2 9.5 155 53-265 16-176 (222)
404 KOG0064|consensus 99.8 2.1E-19 4.5E-24 186.3 9.0 185 39-247 481-674 (728)
405 COG0178 UvrA Excinuclease ATPa 99.8 3.1E-18 6.8E-23 185.8 18.2 127 126-270 783-919 (935)
406 COG2401 ABC-type ATPase fused 99.8 1.9E-18 4.1E-23 175.0 13.7 181 54-260 396-588 (593)
407 PRK00635 excinuclease ABC subu 99.8 4.7E-18 1E-22 201.7 19.1 195 57-270 1506-1796(1809)
408 cd03227 ABC_Class2 ABC-type Cl 99.8 1.6E-18 3.6E-23 160.5 11.3 139 58-256 12-155 (162)
409 KOG0066|consensus 99.7 6.1E-19 1.3E-23 179.1 4.9 208 39-262 264-490 (807)
410 PRK00349 uvrA excinuclease ABC 99.7 6.5E-18 1.4E-22 192.8 13.7 137 124-269 434-584 (943)
411 TIGR00630 uvra excinuclease AB 99.7 1.2E-17 2.6E-22 190.3 14.5 137 124-269 432-582 (924)
412 cd03243 ABC_MutS_homologs The 99.7 3.8E-18 8.3E-23 163.7 7.0 156 59-269 21-178 (202)
413 cd03282 ABC_MSH4_euk MutS4 hom 99.7 4.5E-17 9.7E-22 156.4 9.5 141 53-248 15-157 (204)
414 cd03242 ABC_RecF RecF is a rec 99.7 4.6E-16 1E-20 156.0 16.1 76 173-259 182-269 (270)
415 KOG0063|consensus 99.6 1.4E-15 3.1E-20 154.8 12.9 177 54-255 349-531 (592)
416 TIGR02858 spore_III_AA stage I 99.6 1.4E-15 3.1E-20 151.6 12.1 140 68-268 112-267 (270)
417 cd03284 ABC_MutS1 MutS1 homolo 99.6 8.4E-16 1.8E-20 149.0 8.8 161 53-270 17-181 (216)
418 smart00534 MUTSac ATPase domai 99.5 4E-15 8.8E-20 140.8 4.8 94 160-262 47-142 (185)
419 PF02463 SMC_N: RecF/RecN/SMC 99.5 2.3E-14 5.1E-19 139.0 7.4 89 152-255 120-212 (220)
420 PRK00064 recF recombination pr 99.5 1.5E-12 3.3E-17 135.7 17.8 76 174-259 273-359 (361)
421 KOG0063|consensus 99.4 2.8E-13 6.2E-18 138.2 9.0 178 65-256 98-288 (592)
422 PTZ00132 GTP-binding nuclear p 99.4 2.5E-13 5.5E-18 131.2 8.1 45 178-222 156-205 (215)
423 cd00820 PEPCK_HprK Phosphoenol 99.4 2.4E-13 5.2E-18 116.3 6.5 74 54-136 2-78 (107)
424 cd03281 ABC_MSH5_euk MutS5 hom 99.4 1.3E-12 2.8E-17 126.5 12.0 132 55-240 17-154 (213)
425 TIGR01069 mutS2 MutS2 family p 99.4 4.7E-13 1E-17 151.2 8.9 143 39-240 295-445 (771)
426 cd03287 ABC_MSH3_euk MutS3 hom 99.4 4E-12 8.7E-17 123.6 11.9 139 54-248 18-160 (222)
427 PRK07721 fliI flagellum-specif 99.3 3.7E-11 8E-16 127.5 17.5 177 53-267 145-340 (438)
428 PRK14079 recF recombination pr 99.3 6.2E-11 1.3E-15 123.1 17.5 76 175-264 264-348 (349)
429 PRK08533 flagellar accessory p 99.3 6.9E-11 1.5E-15 115.8 14.0 150 63-255 20-184 (230)
430 PRK00409 recombination and DNA 99.3 7.6E-12 1.6E-16 141.9 8.1 149 58-262 319-470 (782)
431 PHA02562 46 endonuclease subun 99.3 1.1E-11 2.4E-16 136.7 9.1 79 171-259 465-555 (562)
432 cd01128 rho_factor Transcripti 99.3 7.1E-12 1.5E-16 123.8 6.5 180 62-259 11-211 (249)
433 TIGR00618 sbcc exonuclease Sbc 99.3 1.9E-11 4.1E-16 143.9 11.2 88 163-257 939-1036(1042)
434 TIGR00634 recN DNA repair prot 99.2 1.7E-11 3.6E-16 135.2 9.5 76 174-258 440-519 (563)
435 cd01124 KaiC KaiC is a circadi 99.2 1.6E-10 3.5E-15 108.7 13.4 145 69-255 1-163 (187)
436 PRK10869 recombination and rep 99.2 5.6E-11 1.2E-15 130.3 10.4 75 175-258 431-509 (553)
437 COG0178 UvrA Excinuclease ATPa 99.2 2.4E-10 5.1E-15 125.3 14.7 137 124-270 426-577 (935)
438 PRK13695 putative NTPase; Prov 99.2 1.3E-11 2.9E-16 115.4 3.7 81 170-262 74-156 (174)
439 PF13304 AAA_21: AAA domain; P 99.2 3.7E-11 7.9E-16 116.3 6.8 63 173-241 235-300 (303)
440 PRK06793 fliI flagellum-specif 99.1 1.7E-10 3.7E-15 121.6 10.8 169 39-265 130-306 (432)
441 TIGR02788 VirB11 P-type DNA tr 99.1 1.5E-10 3.3E-15 118.3 8.9 142 60-269 137-280 (308)
442 cd03286 ABC_MSH6_euk MutS6 hom 99.1 3.4E-10 7.3E-15 109.8 10.7 133 53-240 16-153 (218)
443 PRK03918 chromosome segregatio 99.1 1.6E-10 3.6E-15 134.0 9.6 82 167-256 781-868 (880)
444 cd01120 RecA-like_NTPases RecA 99.1 2.7E-10 5.9E-15 103.7 8.8 130 69-243 1-140 (165)
445 PRK01156 chromosome segregatio 99.0 1.1E-09 2.4E-14 127.3 12.8 79 170-255 797-883 (895)
446 PRK10246 exonuclease subunit S 99.0 1.1E-09 2.3E-14 128.9 11.0 82 168-256 943-1032(1047)
447 PRK13830 conjugal transfer pro 99.0 6.5E-09 1.4E-13 119.2 14.5 68 190-264 650-727 (818)
448 COG3910 Predicted ATPase [Gene 98.9 1.1E-08 2.5E-13 94.7 12.7 65 170-241 125-189 (233)
449 TIGR03238 dnd_assoc_3 dnd syst 98.9 6.3E-10 1.4E-14 117.4 4.7 51 54-106 19-70 (504)
450 TIGR02168 SMC_prok_B chromosom 98.9 2E-09 4.3E-14 128.2 7.8 79 168-255 1083-1165(1179)
451 TIGR00606 rad50 rad50. This fa 98.9 4E-09 8.6E-14 126.9 10.3 78 169-248 1194-1277(1311)
452 PRK06995 flhF flagellar biosyn 98.9 4.6E-09 1E-13 112.4 9.4 142 56-224 245-392 (484)
453 TIGR02169 SMC_prok_A chromosom 98.8 7.2E-09 1.6E-13 123.6 8.9 79 169-256 1069-1151(1164)
454 PRK06067 flagellar accessory p 98.8 6E-08 1.3E-12 95.1 14.0 163 55-256 12-187 (234)
455 cd01131 PilT Pilus retraction 98.8 3.2E-08 6.9E-13 94.8 9.3 119 69-255 3-122 (198)
456 PRK02224 chromosome segregatio 98.8 2E-08 4.4E-13 116.7 9.5 80 171-257 778-869 (880)
457 smart00382 AAA ATPases associa 98.7 3.7E-07 8E-12 79.8 15.0 117 66-238 1-124 (148)
458 cd01125 repA Hexameric Replica 98.7 4.2E-08 9.1E-13 96.6 9.7 137 67-240 1-159 (239)
459 cd01130 VirB11-like_ATPase Typ 98.7 3.4E-08 7.3E-13 93.5 7.8 84 56-139 14-99 (186)
460 PF01061 ABC2_membrane: ABC-2 98.6 9.2E-09 2E-13 97.6 1.5 127 344-475 1-127 (210)
461 PRK07196 fliI flagellum-specif 98.6 5E-08 1.1E-12 103.2 7.1 174 53-262 142-333 (434)
462 TIGR02655 circ_KaiC circadian 98.6 2.9E-09 6.4E-14 115.4 -2.4 166 56-255 9-190 (484)
463 PRK06002 fliI flagellum-specif 98.6 1.1E-07 2.3E-12 100.8 8.7 83 38-122 138-230 (450)
464 cd02023 UMPK Uridine monophosp 98.6 3.4E-08 7.4E-13 94.2 4.5 113 69-207 1-113 (198)
465 TIGR01026 fliI_yscN ATPase Fli 98.5 1.8E-07 4E-12 99.6 8.7 178 53-268 150-346 (440)
466 TIGR03881 KaiC_arch_4 KaiC dom 98.5 3.2E-08 7E-13 96.6 1.9 47 56-103 8-57 (229)
467 TIGR00611 recf recF protein. A 98.5 2.7E-07 5.8E-12 96.5 7.0 57 175-240 276-341 (365)
468 COG0419 SbcC ATPase involved i 98.5 5E-07 1.1E-11 105.3 9.8 80 170-257 811-898 (908)
469 PRK13891 conjugal transfer pro 98.4 1.4E-06 3E-11 100.7 12.4 55 185-246 680-735 (852)
470 TIGR01420 pilT_fam pilus retra 98.4 1.4E-06 3E-11 90.6 10.9 123 64-254 119-242 (343)
471 PRK09825 idnK D-gluconate kina 98.4 2.4E-07 5.2E-12 87.1 3.8 65 66-134 2-68 (176)
472 PRK05399 DNA mismatch repair p 98.3 1.8E-06 4E-11 99.5 9.4 139 54-250 595-738 (854)
473 TIGR02680 conserved hypothetic 98.3 1E-06 2.3E-11 106.1 7.2 63 168-239 1241-1315(1353)
474 PRK13898 type IV secretion sys 98.3 1.7E-05 3.8E-10 91.3 16.9 47 59-105 438-484 (800)
475 cd01876 YihA_EngB The YihA (En 98.3 3.6E-06 7.7E-11 76.4 8.8 64 153-220 100-169 (170)
476 cd01122 GP4d_helicase GP4d_hel 98.2 1.9E-05 4E-10 79.1 14.3 39 53-91 16-54 (271)
477 PRK06315 type III secretion sy 98.2 2.2E-06 4.7E-11 91.1 7.8 171 53-265 151-345 (442)
478 PLN03210 Resistant to P. syrin 98.2 3.5E-06 7.6E-11 100.7 10.2 44 60-103 200-244 (1153)
479 TIGR02903 spore_lon_C ATP-depe 98.2 2.7E-06 5.8E-11 94.8 8.5 110 66-219 174-291 (615)
480 TIGR02524 dot_icm_DotB Dot/Icm 98.2 2E-06 4.3E-11 89.6 6.7 71 65-135 132-207 (358)
481 PRK00454 engB GTP-binding prot 98.2 1.9E-05 4.2E-10 74.5 12.4 66 154-223 126-195 (196)
482 PRK08149 ATP synthase SpaL; Va 98.2 3.4E-06 7.4E-11 89.3 7.8 68 53-121 138-215 (428)
483 PF13555 AAA_29: P-loop contai 98.2 2.1E-06 4.6E-11 66.0 4.2 38 57-94 12-50 (62)
484 PF13558 SbcCD_C: Putative exo 98.2 3.8E-06 8.3E-11 70.0 6.1 51 169-219 27-90 (90)
485 PRK09270 nucleoside triphospha 98.1 2.8E-06 6E-11 83.2 5.5 74 65-140 31-108 (229)
486 PRK01889 GTPase RsgA; Reviewed 98.1 3E-06 6.6E-11 88.4 6.1 69 57-125 185-253 (356)
487 TIGR00554 panK_bact pantothena 98.1 1.9E-06 4.1E-11 87.0 4.0 72 67-140 62-138 (290)
488 PRK10078 ribose 1,5-bisphospho 98.1 2.9E-06 6.4E-11 80.2 5.0 37 67-106 2-38 (186)
489 PRK13873 conjugal transfer ATP 98.1 4.5E-05 9.8E-10 88.0 15.0 46 190-241 633-679 (811)
490 cd01136 ATPase_flagellum-secre 98.1 4.8E-06 1E-10 85.3 6.2 52 52-104 55-106 (326)
491 PRK07594 type III secretion sy 98.1 3.6E-06 7.8E-11 89.2 5.3 64 39-104 129-192 (433)
492 PRK10416 signal recognition pa 98.1 2.9E-06 6.4E-11 87.0 4.3 72 65-136 112-192 (318)
493 TIGR00416 sms DNA repair prote 98.0 1.2E-05 2.6E-10 86.5 8.3 48 57-104 83-132 (454)
494 TIGR00235 udk uridine kinase. 98.0 1.8E-06 3.8E-11 83.2 1.7 29 65-93 4-32 (207)
495 PRK09862 putative ATP-dependen 98.0 4.3E-06 9.3E-11 90.4 4.3 62 42-105 187-248 (506)
496 cd00009 AAA The AAA+ (ATPases 98.0 1.9E-05 4.2E-10 69.5 7.6 59 180-240 72-130 (151)
497 PRK09099 type III secretion sy 98.0 8.3E-06 1.8E-10 86.7 6.1 53 52-105 149-201 (441)
498 PRK00300 gmk guanylate kinase; 98.0 5E-06 1.1E-10 79.6 3.4 28 65-92 3-30 (205)
499 cd01121 Sms Sms (bacterial rad 98.0 3E-05 6.6E-10 81.2 9.4 47 57-103 71-119 (372)
500 TIGR00767 rho transcription te 97.9 1.7E-05 3.8E-10 82.8 7.1 54 38-92 129-193 (415)
No 1
>KOG0061|consensus
Probab=100.00 E-value=3e-78 Score=664.03 Aligned_cols=436 Identities=28% Similarity=0.462 Sum_probs=365.3
Q ss_pred eEEEEeeEEeCCCC---CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC---CeeEEEECCeeCChhhhcc
Q psy10236 39 HLQVRGLEVPPSSK---NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA---KAFQVILNGHSIPLNALKR 112 (515)
Q Consensus 39 ~L~v~~l~~~~~~~---~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~---~~G~I~~~G~~~~~~~~~~ 112 (515)
.+.++|+++..+.+ .+++|+|||++++|||++||||||||||||||++|+|+... .+|+|.+||++...+.+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~ 104 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK 104 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence 47888888765433 47899999999999999999999999999999999999974 6899999998887788999
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccC-----CChHHHHHHHHHH
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGR-----LTTSELKRLSIAC 187 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~-----LSGGerqRv~IA~ 187 (515)
.+|||.|+|.++|++||+|++.|++.++.+.. ..+.+++++++++++++||.+++|+.+|+ +||||||||+||.
T Consensus 105 ~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~ 183 (613)
T KOG0061|consen 105 ISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-LSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIAL 183 (613)
T ss_pred eeEEEcccccccccccHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHH
Confidence 99999999999999999999999999998753 34567889999999999999999999985 9999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccc
Q psy10236 188 CLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRD 267 (515)
Q Consensus 188 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~ 267 (515)
+|++||+||+|||||+|||+.++.++++.|+++|++| +|||+|+|||+.++++++|++++|.+|+++|+|++++
T Consensus 184 Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~g------rtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~ 257 (613)
T KOG0061|consen 184 ELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSG------RTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRE 257 (613)
T ss_pred HHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCC------CEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHH
Confidence 9999999999999999999999999999999999987 9999999999999999999999999999999999999
Q ss_pred hHHHHHhCCCCCCCCCChhHHHHHhccCChhhHHHHHhhHHHHHHHHHHHHhcc---CC---CCCCCCCCCCCCCCCCCC
Q psy10236 268 MLPYFAAADYPCPAFKNPSDYYLDLVTLDDLSAEAMLESSQRIEQLSELFRRRE---EP---LSDPPLPHLLIPKIGSAS 341 (515)
Q Consensus 268 ~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~s 341 (515)
+.+||++.|++||++.||+||++|+++.++. ....++..+.....+.++... +. ...........+....++
T Consensus 258 ~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 335 (613)
T KOG0061|consen 258 LLEFFSSLGFPCPELENPADFLLDLLSVDSG--TRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTSKKVEIGTSPS 335 (613)
T ss_pred HHHHHHhCCCCCCCcCChHHHHHHHHccCCC--chhHHhHHHHHHHhhhccccchhhhhHHHHhhhcccccccccccCCc
Confidence 9999999999999999999999999886411 111122222222222221000 00 000000001111112789
Q ss_pred HHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy10236 342 PLRQVFALFLRQMAYSQPSSLLNWLSQLLIATILSVIIGCIFWDVPSSDSQLLLNDRFGYHYTIMCLASWPLLIWLSMAR 421 (515)
Q Consensus 342 ~~~q~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~f~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 421 (515)
||.|++.|++|.+.... |++.....|+++.+++|+++|++||+++. ++..+.+|.|++++++....+..++- .+ .
T Consensus 336 ~~~q~~~L~~R~~~~~~-R~~~~~~~r~~~~~~~~~~lg~~~~~~~~--~~~~~~~~~g~~~~~~~~~~f~~~~~-~i-~ 410 (613)
T KOG0061|consen 336 WWTQFKILLKRSLKNIR-RDPSLLLLRLIQSLVTGLLLGLLYLNLGN--DAKGIQNRLGLFFFILSFMTFLSMFG-AV-P 410 (613)
T ss_pred HHHHHHHHHHHHhHHHh-hcHHHHHHHHHHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHHHHHHHHHHHHHHh-HH-H
Confidence 99999999999987544 46667778999999999999999999954 35566699999998877665544332 13 6
Q ss_pred hhhhhhhHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHhhhhhccCCccCCCCHHHHHHHHHHHH
Q psy10236 422 CHGHDRAAVESDIKDGLYSRAVYIIVMLCCSIPASLIIWLGLVIPAYAMSGLYIQGPDTEAFYIYVGLVI 491 (515)
Q Consensus 422 ~~~~~R~v~~re~~~g~Y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~m~gl~~~~~~~~~ff~~~~~~~ 491 (515)
.++.||+++.||+.+|+|+.++|++|+.++++|+.++.+++|++|+|||+|+++ +..+|+.|+++++
T Consensus 411 ~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~---~~~~f~~~~l~~~ 477 (613)
T KOG0061|consen 411 VFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNP---GLSRFLYFLLIIL 477 (613)
T ss_pred HhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCc---chHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999977 7888888886543
No 2
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=5.3e-77 Score=660.24 Aligned_cols=429 Identities=23% Similarity=0.331 Sum_probs=341.0
Q ss_pred CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCC--eeEEEECCeeCChhhhccceEEEecCCCCCCCCCH
Q psy10236 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAK--AFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNV 129 (515)
Q Consensus 52 ~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~--~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv 129 (515)
+++.+|+|+|+++++||++||+||||||||||||+|+|+.+|+ +|+|.+||+++.. ..+++++||+|++.+++.+||
T Consensus 79 ~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV 157 (659)
T PLN03211 79 QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTV 157 (659)
T ss_pred CCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCH
Confidence 3567999999999999999999999999999999999999885 8999999998754 345679999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcc-----cCCChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q psy10236 130 AQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRV-----GRLTTSELKRLSIACCLMSHADILLLDCPTVF 204 (515)
Q Consensus 130 ~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v-----~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsg 204 (515)
+||+.+.+.++.+.. ..+.+.+++++++++.+||.++.|+++ ++|||||||||+||++|+.+|+||+|||||+|
T Consensus 158 ~E~l~~~a~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 158 RETLVFCSLLRLPKS-LTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred HHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 999999876654321 123345567899999999998887655 46999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHHHHHhCCCCCCCCCC
Q psy10236 205 MDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFAAADYPCPAFKN 284 (515)
Q Consensus 205 LD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~ 284 (515)
||+.++.++.+.|++++++| +|||+++|++..++.++||++++|++|++++.|+++++.+||+++|++||.+.|
T Consensus 237 LD~~~~~~l~~~L~~l~~~g------~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~N 310 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQKG------KTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMN 310 (659)
T ss_pred cCHHHHHHHHHHHHHHHhCC------CEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCC
Confidence 99999999999999998766 899999999987789999999999999999999999999999999999999999
Q ss_pred hhHHHHHhccCChhhHH-HHHhhHHHHHHHHHHHHh------------ccCCC-CCCC----CCCC--CCCCCCCCCHHH
Q psy10236 285 PSDYYLDLVTLDDLSAE-AMLESSQRIEQLSELFRR------------REEPL-SDPP----LPHL--LIPKIGSASPLR 344 (515)
Q Consensus 285 ~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~~~-~~~~----~~~~--~~~~~~~~s~~~ 344 (515)
|+||++++++.+..... ...+.....+.+.+.|+. ..... .... .... .....+.++||+
T Consensus 311 pADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 390 (659)
T PLN03211 311 PADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFN 390 (659)
T ss_pred HHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHH
Confidence 99999999875321000 000000000111111110 00000 0000 0000 011124578999
Q ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10236 345 QVFALFLRQMAYSQPSSLLNWLSQLLIATILSVIIGCIFWDVPSSDSQLLLNDRFGYHYTIMCLASWPLLIWLSMARCHG 424 (515)
Q Consensus 345 q~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~f~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 424 (515)
|+..|++|++.. +++. ....+|+++++++|+++|++||+++ ..++++|.|++|++.++..+...+ ..+ ..++
T Consensus 391 Q~~~L~~R~~~~-~r~~-~~~~~r~~~~i~~~ll~G~lf~~~~----~~~~~~r~g~lff~~~~~~~~~~~-~~~-~~f~ 462 (659)
T PLN03211 391 QFSILLQRSLKE-RKHE-SFNTLRVFQVIAAALLAGLMWWHSD----FRDVQDRLGLLFFISIFWGVFPSF-NSV-FVFP 462 (659)
T ss_pred HHHHHHHHHHHH-HhCc-HHHHHHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHH
Confidence 999999999865 3343 3445799999999999999999984 457899999999876654433222 213 6678
Q ss_pred hhhhHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHhhhhhccCCccCCCCHHHHHHHHHHHH-HHHHhhhh
Q psy10236 425 HDRAAVESDIKDGLYSRAVYIIVMLCCSIPASLIIWLGLVIPAYAMSGLYIQGPDTEAFYIYVGLVI-PAYAMSGL 499 (515)
Q Consensus 425 ~~R~v~~re~~~g~Y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~m~gl~~~~~~~~~ff~~~~~~~-~~~~~~~~ 499 (515)
.||++++||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++ ++.+||+|+++++ ..++++++
T Consensus 463 ~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~---~~~~F~~f~li~~l~~~~~~s~ 535 (659)
T PLN03211 463 QERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKP---ELGAFLLTLLVLLGYVLVSQGL 535 (659)
T ss_pred HhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcC---CHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987 8999999887654 44444443
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2.1e-74 Score=638.43 Aligned_cols=422 Identities=26% Similarity=0.402 Sum_probs=351.6
Q ss_pred CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCC---eeEEEECCeeCChhhhccceEEEecCCCCCCCCC
Q psy10236 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAK---AFQVILNGHSIPLNALKRRLVYVRSQSFLSPELN 128 (515)
Q Consensus 52 ~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~---~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lT 128 (515)
+++.+|+|+|+++++||++||+|||||||||||++|+|+.++. +|+|.+||+++....+++.++||+|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 4678999999999999999999999999999999999998874 8999999999876667889999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccC------CChHHHHHHHHHHHHHhCCCEEEEeCCC
Q psy10236 129 VAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGR------LTTSELKRLSIACCLMSHADILLLDCPT 202 (515)
Q Consensus 129 v~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~------LSGGerqRv~IA~aL~~~p~lLlLDEPt 202 (515)
|+||+.|++.++.+.. ..+.+.+++++++++.+||.++.|+++++ |||||||||+||++|+.+|++++|||||
T Consensus 116 V~e~l~f~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 116 VREHLMFQAHLRMPRR-VTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred HHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 9999999988775432 22345567899999999999999999984 9999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHHHHHhCCCCCCCC
Q psy10236 203 VFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFAAADYPCPAF 282 (515)
Q Consensus 203 sgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~ 282 (515)
+|||+.++..+++.|++++++| +|||+++|||..++.++||++++|++|++++.|+++++.+||++.|++||++
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~g------~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~ 268 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQKG------KTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPEN 268 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhCC------CEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCC
Confidence 9999999999999999998766 8999999999888999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhccCChhhHHHHHhhHHHHHHHHHHHHhccC------C---CC--CCC---CCCCCCCCCCCCCHHHHHHH
Q psy10236 283 KNPSDYYLDLVTLDDLSAEAMLESSQRIEQLSELFRRREE------P---LS--DPP---LPHLLIPKIGSASPLRQVFA 348 (515)
Q Consensus 283 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~--~~~---~~~~~~~~~~~~s~~~q~~~ 348 (515)
.||+||++++++.++.... ++.+..+.+.+.|+++.. . .. +.. .........+..++++|++.
T Consensus 269 ~n~ad~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 345 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSEN---ESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYA 345 (617)
T ss_pred CChHHHHHHHhhcCccccc---chHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHH
Confidence 9999999999865432211 111222233333322110 0 00 000 00001123457899999999
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy10236 349 LFLRQMAYSQPSSLLNWLSQLLIATILSVIIGCIFWDVPSSDSQLLLNDRFGYHYTIMCLASWPLLIWLSMARCHGHDRA 428 (515)
Q Consensus 349 l~~R~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~f~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 428 (515)
|++|++...+ |++..+..++++++++|+++|++||+++. ++.++++|.|++|++.....+..++ ..+ ..++.||+
T Consensus 346 l~~R~~~~~~-R~~~~~~~~~~~~i~~~li~G~~f~~~~~--~~~~~~~~~g~lf~~~~~~~f~~~~-~~~-~~f~~er~ 420 (617)
T TIGR00955 346 LLKRSWLSVL-RDPLLLKVRLIQTMMTAILIGLIYLGQGL--TQKGVQNINGALFLFLTNMTFQNVF-PVI-NVFTAELP 420 (617)
T ss_pred HHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHH
Confidence 9999987544 67777888999999999999999999864 4678899999888776554444322 112 56789999
Q ss_pred HHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHhhhhhccCCccCCCCHHHHHHHHHHHH
Q psy10236 429 AVESDIKDGLYSRAVYIIVMLCCSIPASLIIWLGLVIPAYAMSGLYIQGPDTEAFYIYVGLVI 491 (515)
Q Consensus 429 v~~re~~~g~Y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~m~gl~~~~~~~~~ff~~~~~~~ 491 (515)
++.||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++ ++.+||+|+++++
T Consensus 421 v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~---~~~~f~~f~l~~~ 480 (617)
T TIGR00955 421 VFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRS---GATHFLTFLFLVT 480 (617)
T ss_pred HHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCc---cHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 8899998886543
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.1e-72 Score=668.61 Aligned_cols=434 Identities=18% Similarity=0.245 Sum_probs=347.6
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC----CCCeeEEEECCeeCCh--hhhccceEEEecCCCCCCC
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN----DAKAFQVILNGHSIPL--NALKRRLVYVRSQSFLSPE 126 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~----~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~ 126 (515)
.+.+|+|+|+++++||+++|+||||||||||||+|+|+. +|++|+|.+||+++.. ...++.++|++|++.++|.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 356999999999999999999999999999999999996 4689999999998742 2345679999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCC---CchhhHHHH-HHHHHHHcCCcccccCccc-----CCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 127 LNVAQTLTFYSHLRRPPKH---SIKVTTSEQ-MGLLIEELGLTQVLSTRVG-----RLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 127 lTv~e~l~~~~~~~~~~~~---~~~~~~~~~-v~~~l~~lgL~~~~~~~v~-----~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+||+||+.|++.++.+... ..+.+..++ ++++++.+||++++|++++ .|||||||||+||++|+.+|+|++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 9999999998877643211 112222233 4678999999999988875 599999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHHHHHhCCC
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFAAADY 277 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~~f~~~g~ 277 (515)
|||||+|||+.++.++++.|++++++. |+|||+++|||..+++++||++++|++|+++++|+++++.+||+++|+
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~-----g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~ 307 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANIL-----DTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGF 307 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhc-----CCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCC
Confidence 999999999999999999999998752 389999999998899999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHhccCChhhHHHHHh--hHHHHHHHHHHHHhcc-------------CCC-C------------CCCC
Q psy10236 278 PCPAFKNPSDYYLDLVTLDDLSAEAMLE--SSQRIEQLSELFRRRE-------------EPL-S------------DPPL 329 (515)
Q Consensus 278 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------~~~-~------------~~~~ 329 (515)
+||+++||+||+.++++.++.......+ .....+++.+.|+++. ... . ....
T Consensus 308 ~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1394)
T TIGR00956 308 KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQS 387 (1394)
T ss_pred CCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhc
Confidence 9999999999999998754321100000 0011122222222111 000 0 0000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHhhHHHHHHHHHHHH
Q psy10236 330 PHLLIPKIGSASPLRQVFALFLRQMAYSQPSSLLNWLSQLLIATILSVIIGCIFWDVPSSDSQLLLNDRFGYHYTIMCLA 409 (515)
Q Consensus 330 ~~~~~~~~~~~s~~~q~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~f~~l~~~~~~~~~~~~~g~~~~~~~~~ 409 (515)
........+..|+|+|++.|++|++...+ |++..+++|+++++++|+++|++||+++.+ +.++++|.|++|+...+.
T Consensus 388 ~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~-Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~--~~~~~~r~g~lf~~~~~~ 464 (1394)
T TIGR00956 388 KRTRPSSPYTVSFSMQVKYCLARNFLRMK-GNPSFTLFMVFGNIIMALILSSVFYNLPKN--TSDFYSRGGALFFAILFN 464 (1394)
T ss_pred ccccCCCCCcCCHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHhhcCCCCC--chhHHHHHHHHHHHHHHH
Confidence 01112234678999999999999997544 677788889999999999999999999753 567899999999876655
Q ss_pred HHHHHHHHHhhhhhhhhhhHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHhhhhhccCCccCCCCHHHHHHHHHH
Q psy10236 410 SWPLLIWLSMARCHGHDRAAVESDIKDGLYSRAVYIIVMLCCSIPASLIIWLGLVIPAYAMSGLYIQGPDTEAFYIYVGL 489 (515)
Q Consensus 410 ~~~~~~~~~~~~~~~~~R~v~~re~~~g~Y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~m~gl~~~~~~~~~ff~~~~~ 489 (515)
.+..+ ..+ ..+..+|++++||+.+|+|++++|++|++++++|+.++.+++|++|+|||+||++ ++++||+|+++
T Consensus 465 ~~~~~--~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~---~~~~Ff~f~l~ 538 (1394)
T TIGR00956 465 AFSSL--LEI-ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRR---TAGRFFFYLLI 538 (1394)
T ss_pred HHHHH--HHH-HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcc---cHHHHHHHHHH
Confidence 44432 223 3456799999999999999999999999999999999999999999999999998 89999999876
Q ss_pred H-HHHHHhhhhh
Q psy10236 490 V-IPAYAMSGLY 500 (515)
Q Consensus 490 ~-~~~~~~~~~~ 500 (515)
+ +.+++++++|
T Consensus 539 ~~l~~~~~~~~~ 550 (1394)
T TIGR00956 539 LFICTLAMSHLF 550 (1394)
T ss_pred HHHHHHHHHHHH
Confidence 5 4455555553
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.1e-71 Score=652.03 Aligned_cols=437 Identities=22% Similarity=0.304 Sum_probs=353.0
Q ss_pred eEEEEeeEEeCCC-----------CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC--CeeEEEECCeeC
Q psy10236 39 HLQVRGLEVPPSS-----------KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA--KAFQVILNGHSI 105 (515)
Q Consensus 39 ~L~v~~l~~~~~~-----------~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~--~~G~I~~~G~~~ 105 (515)
.+.++||++..+. +++.+|+|||++++|||++||+||||||||||||+|+|+.++ .+|+|.+||++.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999987531 234799999999999999999999999999999999999764 689999999987
Q ss_pred ChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCccc-----CCChHHH
Q psy10236 106 PLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVG-----RLTTSEL 180 (515)
Q Consensus 106 ~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~-----~LSGGer 180 (515)
....+++.+|||+|++.+++.+||+|||.|++.++.+.. ....+..++++++++.+||.++.|++++ .||||||
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~-~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKE-VSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence 655567789999999999999999999999887664421 1233445678999999999999999974 7999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC-CeE
Q psy10236 181 KRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG-GRT 259 (515)
Q Consensus 181 qRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~-G~i 259 (515)
|||+||++|+.+|+||||||||+|||+.++..+++.|++++++| +|||+++|||..++++.||++++|++ |++
T Consensus 1026 kRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g------~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG------RTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 99999999999999999999999999999999999999998876 89999999998778999999999986 899
Q ss_pred EEecCc----cchHHHHHhC-CC-CCCCCCChhHHHHHhccCChhh------HHHHHhhHHHHHHHHHHHHhccCCCCCC
Q psy10236 260 MYSGKR----RDMLPYFAAA-DY-PCPAFKNPSDYYLDLVTLDDLS------AEAMLESSQRIEQLSELFRRREEPLSDP 327 (515)
Q Consensus 260 v~~G~~----~~~~~~f~~~-g~-~~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (515)
+++|++ +++.+||+++ |. .||+..||+||++|+++.+... .+.+.++.... ...+..+....+. +
T Consensus 1100 v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~-~~~~~~~~~~~~~--~ 1176 (1470)
T PLN03140 1100 IYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQ-RNKALVKELSTPP--P 1176 (1470)
T ss_pred EEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHH-HHHHHHHHhccCC--C
Confidence 999996 6899999997 66 4999999999999997643211 11222222111 1111111111111 1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHhcCCCCCC-chhhHhhHHHHHHHHH
Q psy10236 328 PLPHLLIPKIGSASPLRQVFALFLRQMAYSQPSSLLNWLSQLLIATILSVIIGCIFWDVPSSD-SQLLLNDRFGYHYTIM 406 (515)
Q Consensus 328 ~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~f~~l~~~~-~~~~~~~~~g~~~~~~ 406 (515)
..........+..++|+|++.|++|++...+ |++.+..+|+++.+++|+++|++||+++.+. +..+++++.|++|+..
T Consensus 1177 ~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~-R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~ 1255 (1470)
T PLN03140 1177 GASDLYFATQYSQSTWGQFKSCLWKQWWTYW-RSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAV 1255 (1470)
T ss_pred CccccccCccccCCHHHHHHHHHHHHHHHHH-CCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHH
Confidence 1111112345788999999999999997444 6777888999999999999999999997543 2356788899887765
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHhhhhhccCCccCCCCHHHHHHH
Q psy10236 407 CLASWPLLIWLSMARCHGHDRAAVESDIKDGLYSRAVYIIVMLCCSIPASLIIWLGLVIPAYAMSGLYIQGPDTEAFYIY 486 (515)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~R~v~~re~~~g~Y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~m~gl~~~~~~~~~ff~~ 486 (515)
.+..+... .++...+..||++|+||+++|+|++++|++|++++|+|+.++.+++|++|+|||+||++ ++.+||+|
T Consensus 1256 ~~~~~~~~--~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~---~~~~f~~~ 1330 (1470)
T PLN03140 1256 LFVGINNC--STVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEW---TAAKFFWF 1330 (1470)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc---cHHHHHHH
Confidence 54443322 12335566899999999999999999999999999999999999999999999999987 88999988
Q ss_pred HHHHH
Q psy10236 487 VGLVI 491 (515)
Q Consensus 487 ~~~~~ 491 (515)
+++++
T Consensus 1331 ~~~~~ 1335 (1470)
T PLN03140 1331 YFISF 1335 (1470)
T ss_pred HHHHH
Confidence 86554
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.5e-72 Score=661.67 Aligned_cols=436 Identities=16% Similarity=0.216 Sum_probs=347.6
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCC---eeEEEECCeeCChhhhccceEEEecCCCCCCCCCH
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAK---AFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNV 129 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~---~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv 129 (515)
++.+|+|+|+.++|||+++|+||||||||||||+|+|+++|+ +|+|.+||+++.....++.++||+|++.+++.+||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 456999999999999999999999999999999999999988 99999999987543446789999999999999999
Q ss_pred HHHHHHHhhcCCCCCC------Cchhh------------------------HHHHHHHHHHHcCCcccccCcc-----cC
Q psy10236 130 AQTLTFYSHLRRPPKH------SIKVT------------------------TSEQMGLLIEELGLTQVLSTRV-----GR 174 (515)
Q Consensus 130 ~e~l~~~~~~~~~~~~------~~~~~------------------------~~~~v~~~l~~lgL~~~~~~~v-----~~ 174 (515)
+|||.|++.++.+... ....+ .+..++++++.+||++++|+.+ +.
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 9999998876532110 00000 0123577999999999886655 56
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE
Q psy10236 175 LTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV 254 (515)
Q Consensus 175 LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL 254 (515)
|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++.. ++|+|+++|||..+++++||+|++|
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~-----g~Tviis~Hqp~~~i~~lfD~vilL 411 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLT-----EATVLMSLLQPAPETFDLFDDIILL 411 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhc-----CCEEEEEecCCCHHHHHHhheEEEe
Confidence 99999999999999999999999999999999999999999999998742 3899999999988999999999999
Q ss_pred eCCeEEEecCccchHHHHHhCCCCCCCCCChhHHHHHhccCChhhHHHHHh-hH---HHHHHHHHHHHhccC--------
Q psy10236 255 SGGRTMYSGKRRDMLPYFAAADYPCPAFKNPSDYYLDLVTLDDLSAEAMLE-SS---QRIEQLSELFRRREE-------- 322 (515)
Q Consensus 255 ~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~-------- 322 (515)
++|+++++|+++++.+||+++|+.||+++||+||+.++++.++........ .. ...+++.+.|+++..
T Consensus 412 ~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~ 491 (1470)
T PLN03140 412 SEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENEL 491 (1470)
T ss_pred eCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHH
Confidence 999999999999999999999999999999999999998765432110000 00 113344445543310
Q ss_pred --CCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHhcCCCCCC-chhhHhhH
Q psy10236 323 --PLSD-PPLPHLLIPKIGSASPLRQVFALFLRQMAYSQPSSLLNWLSQLLIATILSVIIGCIFWDVPSSD-SQLLLNDR 398 (515)
Q Consensus 323 --~~~~-~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~f~~l~~~~-~~~~~~~~ 398 (515)
+... ...+.....+.+..++|.|++.|++|++.... |++..++.|+++.+++|+++|++||+++.+. +....+.+
T Consensus 492 ~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~-Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~ 570 (1470)
T PLN03140 492 SVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMK-RNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALY 570 (1470)
T ss_pred hhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Confidence 0000 00111122345788999999999999997554 6777788899999999999999999996432 12234566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHhhhhhccCCccCCC
Q psy10236 399 FGYHYTIMCLASWPLLIWLSMARCHGHDRAAVESDIKDGLYSRAVYIIVMLCCSIPASLIIWLGLVIPAYAMSGLYIQGP 478 (515)
Q Consensus 399 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~R~v~~re~~~g~Y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~m~gl~~~~~ 478 (515)
.|.+|+.+...++..+ ..+ ..++.+|+||+||+.+++|++++|++|++++++|+.++.+++|++|+|||+||++
T Consensus 571 ~g~lff~~l~~~~~~~--~~l-~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~--- 644 (1470)
T PLN03140 571 IGALLFSMIINMFNGF--AEL-ALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAP--- 644 (1470)
T ss_pred HHHHHHHHHHHHHHHH--HHH-HHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCC---
Confidence 7877766554444332 112 4556899999999999999999999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHH-HHHHHhhhhh
Q psy10236 479 DTEAFYIYVGLV-IPAYAMSGLY 500 (515)
Q Consensus 479 ~~~~ff~~~~~~-~~~~~~~~~~ 500 (515)
++++||+|++++ +.+++++++|
T Consensus 645 ~~~~Ff~f~l~~~l~~~~~~~l~ 667 (1470)
T PLN03140 645 EASRFFKQLLLVFLIQQMAAGIF 667 (1470)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 899999999765 4555665554
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2e-70 Score=649.33 Aligned_cols=434 Identities=22% Similarity=0.282 Sum_probs=348.3
Q ss_pred eEEEEeeEEeCCC--CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC---CCeeEEEECCeeCChhhhccc
Q psy10236 39 HLQVRGLEVPPSS--KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND---AKAFQVILNGHSIPLNALKRR 113 (515)
Q Consensus 39 ~L~v~~l~~~~~~--~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~---~~~G~I~~~G~~~~~~~~~~~ 113 (515)
+++++||+++++. +++.+|+|||+++++||++||+||||||||||||+|+|+.+ +++|+|.+||+++.. .+++.
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~ 837 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRS 837 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcc
Confidence 5899999998742 34679999999999999999999999999999999999987 688999999999853 46788
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCccc----CCChHHHHHHHHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVG----RLTTSELKRLSIACCL 189 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~----~LSGGerqRv~IA~aL 189 (515)
++||+|++.+++.+||+||+.+.+.++.+.. ..+.+..++++++++.+||.+++|+.++ +|||||||||+||++|
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~-~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL 916 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKS-VSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVEL 916 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHH
Confidence 9999999999999999999999887765432 2234456788999999999999999998 6999999999999999
Q ss_pred HhCCC-EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCC-eEEEecCc--
Q psy10236 190 MSHAD-ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGG-RTMYSGKR-- 265 (515)
Q Consensus 190 ~~~p~-lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G-~iv~~G~~-- 265 (515)
+.+|+ ||+|||||+|||+.++..+++.|++++++| +|||+++|+|...+++.||++++|++| ++++.|++
T Consensus 917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g------~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHG------QAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC------CEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 99997 999999999999999999999999998776 899999999987778899999999987 99999997
Q ss_pred --cchHHHHHhCCC-CCCCCCChhHHHHHhccCChhh------HHHHHhhHHHHHHHHHHHHhccCCCCCCCCC-CCCCC
Q psy10236 266 --RDMLPYFAAADY-PCPAFKNPSDYYLDLVTLDDLS------AEAMLESSQRIEQLSELFRRREEPLSDPPLP-HLLIP 335 (515)
Q Consensus 266 --~~~~~~f~~~g~-~~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 335 (515)
+++.+||+..|+ +||++.||+||++|+++..... .+.+..+... +...+............... .....
T Consensus 991 ~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1394)
T TIGR00956 991 NSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEY-QAVKNELDRLEAELSKAEDDNDPDAL 1069 (1394)
T ss_pred ccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHH-HHHHHHHHHhhcccccCccccccccc
Confidence 568999999996 9999999999999998643211 1112222111 11111101100100000000 00112
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHhhHHHHHHHHHHHHHHHHHH
Q psy10236 336 KIGSASPLRQVFALFLRQMAYSQPSSLLNWLSQLLIATILSVIIGCIFWDVPSSDSQLLLNDRFGYHYTIMCLASWPLLI 415 (515)
Q Consensus 336 ~~~~~s~~~q~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~f~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 415 (515)
..+.+++|+|++.|++|++...+ |++.+..+|+++++++|+++|++||+++. ++.++++|.|.+|+...+..+. .
T Consensus 1070 ~~~~~s~~~q~~~l~~R~~~~~~-R~~~~~~~r~~~~i~~~l~~G~~f~~~~~--~~~~i~~~~g~~f~~~~~~~~~--~ 1144 (1394)
T TIGR00956 1070 SKYAASLWYQFKLVLWRTFQQYW-RTPDYLYSKFFLTIFAALFIGFTFFKVGT--SLQGLQNQMFAVFMATVLFNPL--I 1144 (1394)
T ss_pred cccCCCHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHHHHHH--H
Confidence 35788999999999999997544 67778889999999999999999999964 4678999999888655433222 1
Q ss_pred HHHhhhhhhhhhhHH-hhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHhhhhhccCCccCCCCH-------HHHHHHH
Q psy10236 416 WLSMARCHGHDRAAV-ESDIKDGLYSRAVYIIVMLCCSIPASLIIWLGLVIPAYAMSGLYIQGPDT-------EAFYIYV 487 (515)
Q Consensus 416 ~~~~~~~~~~~R~v~-~re~~~g~Y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~m~gl~~~~~~~-------~~ff~~~ 487 (515)
...+ ..++.+|.++ +||+++|+|++.+|++|++++|+|+.++.+++|++|+|||+||++ ++ .+||.|+
T Consensus 1145 ~~~~-~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~---~~~~~~~~~~~f~~~~ 1220 (1394)
T TIGR00956 1145 QQYL-PPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYW---NASKTGQVHERGVLFW 1220 (1394)
T ss_pred HHhh-hhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccC---cccccccccchHHHHH
Confidence 2223 5566778775 899999999999999999999999999999999999999999986 33 2377666
Q ss_pred HHH
Q psy10236 488 GLV 490 (515)
Q Consensus 488 ~~~ 490 (515)
+++
T Consensus 1221 ~~~ 1223 (1394)
T TIGR00956 1221 LLS 1223 (1394)
T ss_pred HHH
Confidence 544
No 8
>KOG0065|consensus
Probab=100.00 E-value=6.5e-71 Score=617.58 Aligned_cols=450 Identities=23% Similarity=0.324 Sum_probs=366.9
Q ss_pred CCCCCCCCCCCCCcCeEEEEeeEEeC--CCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC--CeeEEE
Q psy10236 24 GGAPSFQSGRPEFFPHLQVRGLEVPP--SSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA--KAFQVI 99 (515)
Q Consensus 24 ~~~~~~~~~~~~~~~~L~v~~l~~~~--~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~--~~G~I~ 99 (515)
++..++++...........+|+.+.. +.+.+++|+||++-++||-++||||+||||||||||+|+|+... .+|+|+
T Consensus 772 ~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~ 851 (1391)
T KOG0065|consen 772 KMVLPFTPLSLTFKDVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDIL 851 (1391)
T ss_pred cccCCCccccccccceEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEE
Confidence 44444433322233356777776643 33567899999999999999999999999999999999999754 589999
Q ss_pred ECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccC----C
Q psy10236 100 LNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGR----L 175 (515)
Q Consensus 100 ~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~----L 175 (515)
+||.+.+...++|.+|||.|+|.|.|.+||+|.|.|++.+|.+.. ...+++.+.++++++.++|++++|..||. |
T Consensus 852 i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~-v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GL 930 (1391)
T KOG0065|consen 852 ISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKE-VSDEEKYEYVEEVIELLELKEYADALVGLPGSGL 930 (1391)
T ss_pred ECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCc-CCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCC
Confidence 999998777899999999999999999999999999999998764 33455568899999999999999999998 9
Q ss_pred ChHHHHHHHHHHHHHhCC-CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE
Q psy10236 176 TTSELKRLSIACCLMSHA-DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV 254 (515)
Q Consensus 176 SGGerqRv~IA~aL~~~p-~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL 254 (515)
|..||||++||.+|+.+| .||+|||||||||+.++..+++.+|++++.| +||++|+|||+.++++.||++++|
T Consensus 931 s~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tG------qtIlCTIHQPS~~ife~FD~LLLL 1004 (1391)
T KOG0065|consen 931 STEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTG------QTILCTIHQPSIDIFEAFDELLLL 1004 (1391)
T ss_pred CHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcC------CeEEEEecCCcHHHHHHHhHHHHH
Confidence 999999999999999999 9999999999999999999999999999987 999999999999999999999999
Q ss_pred -eCCeEEEecCccc----hHHHHHhCC-CCCCCCCChhHHHHHhccCChhh------HHHHHhhHHHHHHHHHHHHhccC
Q psy10236 255 -SGGRTMYSGKRRD----MLPYFAAAD-YPCPAFKNPSDYYLDLVTLDDLS------AEAMLESSQRIEQLSELFRRREE 322 (515)
Q Consensus 255 -~~G~iv~~G~~~~----~~~~f~~~g-~~~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 322 (515)
++|++||+|+..+ +++||++.| .+||...|||||++|+++..... ++.+..+.+. ++..+..+...+
T Consensus 1005 krGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~-k~~~e~v~~l~~ 1083 (1391)
T KOG0065|consen 1005 KRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEY-KRNKELVKELSQ 1083 (1391)
T ss_pred hcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccccCccHHHHHhccHHH-HHHHHHHHHHhc
Confidence 5799999999754 667999886 89999999999999998653221 3344444332 222222222222
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHhhHHHHH
Q psy10236 323 PLSDPPLPHLLIPKIGSASPLRQVFALFLRQMAYSQPSSLLNWLSQLLIATILSVIIGCIFWDVPSSDSQLLLNDRFGYH 402 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~f~~l~~~~~~~~~~~~~g~~ 402 (515)
+.+. .........++..|+|.|++.+++|++.. .||++.+.++|++..++.||++|+.||+++ ++..+++|.+|..
T Consensus 1084 ~~~~-~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~s-yWRsp~y~~ar~~~~i~~gl~iGf~F~~~g--~~~q~lqn~m~a~ 1159 (1391)
T KOG0065|consen 1084 PPPG-FSTDLEFKTRFAQSLWYQFKLCLWRQFLS-YWRSPDYLMARFALTIVAGLFIGFTFWKVG--HNVQGLQNAMGAA 1159 (1391)
T ss_pred CCcc-CCcccccccccchhHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHhheeeeeecC--CcHHHHHHHHHHH
Confidence 2211 11122234567899999999999999863 447888889999999999999999999995 5677889999988
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHhhhhhccCCccCCCCHHH
Q psy10236 403 YTIMCLASWPLLIWLSMARCHGHDRAAVESDIKDGLYSRAVYIIVMLCCSIPASLIIWLGLVIPAYAMSGLYIQGPDTEA 482 (515)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~R~v~~re~~~g~Y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~m~gl~~~~~~~~~ 482 (515)
|+..++.. |. +.+..+..+..+|.+++||+++|+||..+|++|++++|+|+.++.+++|.+++|||+|+.. ++.+
T Consensus 1160 yma~v~~~-~~-~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~---~a~~ 1234 (1391)
T KOG0065|consen 1160 YMATVFSG-PN-NNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYW---TASK 1234 (1391)
T ss_pred HHHHHHhh-hh-hhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchh---hHHH
Confidence 76544332 22 1222335556889999999999999999999999999999999999999999999999998 7888
Q ss_pred HHHHHHHH
Q psy10236 483 FYIYVGLV 490 (515)
Q Consensus 483 ff~~~~~~ 490 (515)
|++|++..
T Consensus 1235 ~~~f~~~~ 1242 (1391)
T KOG0065|consen 1235 FFWFLLFM 1242 (1391)
T ss_pred HHHHHHHH
Confidence 77666443
No 9
>KOG0065|consensus
Probab=100.00 E-value=1.4e-64 Score=566.77 Aligned_cols=436 Identities=23% Similarity=0.337 Sum_probs=358.1
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC---CeeEEEECCeeCChhhhccceEEEecCCCCCCCCCH
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA---KAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNV 129 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~---~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv 129 (515)
...+|+|+|+-++|||++.++||+||||||||++|+|..+. ..|+|.+||.+.+...-++.++|+.|+|.++|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 34699999999999999999999999999999999998764 357999999988654447889999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCchhhHHH----HHHHHHHHcCCcccccCcccC-----CChHHHHHHHHHHHHHhCCCEEEEeC
Q psy10236 130 AQTLTFYSHLRRPPKHSIKVTTSE----QMGLLIEELGLTQVLSTRVGR-----LTTSELKRLSIACCLMSHADILLLDC 200 (515)
Q Consensus 130 ~e~l~~~~~~~~~~~~~~~~~~~~----~v~~~l~~lgL~~~~~~~v~~-----LSGGerqRv~IA~aL~~~p~lLlLDE 200 (515)
+|+|.|+++++.+..+..+..+++ ..+.+++.+||++++|+.+|+ +||||||||++|.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999988744322222222 567899999999999999997 99999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHHHHHhCCCCCC
Q psy10236 201 PTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFAAADYPCP 280 (515)
Q Consensus 201 PtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~~f~~~g~~~~ 280 (515)
+|+|||+.++.++++.|+++++.. +.|.+++++||.++++++||+|++|.+|++||+||.+++++||+++|+.||
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~-----~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP 361 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHIT-----GATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCP 361 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhh-----cceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCC
Confidence 999999999999999999998753 489999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHhccCChhhHHHHHh----hHHHHHHHHHHHHhccC------CC-----CCCCCCCCCCCCCCCCCHHHH
Q psy10236 281 AFKNPSDYYLDLVTLDDLSAEAMLE----SSQRIEQLSELFRRREE------PL-----SDPPLPHLLIPKIGSASPLRQ 345 (515)
Q Consensus 281 ~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~-----~~~~~~~~~~~~~~~~s~~~q 345 (515)
++++++||+.++.+..+.......+ ......++.+.|...+. .. .....+.....+.+..+.|.|
T Consensus 362 ~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~q 441 (1391)
T KOG0065|consen 362 PRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQ 441 (1391)
T ss_pred CccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHH
Confidence 9999999999998732221110000 00112334444433321 00 011122334456788999999
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy10236 346 VFALFLRQMAYSQPSSLLNWLSQLLIATILSVIIGCIFWDVPSSDSQLLLNDRFGYHYTIMCLASWPLLIWLSMARCHGH 425 (515)
Q Consensus 346 ~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~f~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (515)
++.|+.|.+.... ++..+++.++++.+++|+++|++||+.+. .+..+.+.|.|++|+.+.+..+..+. -+ ....+
T Consensus 442 vk~c~~R~f~l~k-~n~~~~~~~~~~~~i~ali~gslF~~~~~-~t~~~~~~~~~~lffsll~~~f~~la--Ei-~~~~~ 516 (1391)
T KOG0065|consen 442 VKACTIREFLLMK-RNYFYYVFKTVQLVIQALITGSLFYRTPM-STTSGGYSRGGALFFALLFNLFNGLA--EI-ALTFQ 516 (1391)
T ss_pred HHHHHHHHHHHHh-CCceEEEhHHHHHHHHHHHHhhheeeccC-cccccchhhhhHHHHHHHHHHHHhHH--HH-HHHHh
Confidence 9999999986544 55556677999999999999999999972 33345678889888876654443221 11 33458
Q ss_pred hhhHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHhhhhhccCCccCCCCHHHHHHHHHHH-HHHHHhhhhhc
Q psy10236 426 DRAAVESDIKDGLYSRAVYIIVMLCCSIPASLIIWLGLVIPAYAMSGLYIQGPDTEAFYIYVGLV-IPAYAMSGLYI 501 (515)
Q Consensus 426 ~R~v~~re~~~g~Y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~m~gl~~~~~~~~~ff~~~~~~-~~~~~~~~~~~ 501 (515)
.|||++|||...+|+|+||.++.+++++|+.++.+++|.+|+||++||++ ++++||+|++++ +..+++++||-
T Consensus 517 ~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~---~A~rFF~~fL~lf~~~~~~s~lFr 590 (1391)
T KOG0065|consen 517 RLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKR---NAGRFFIQFLFLFLCQFCMSGLFR 590 (1391)
T ss_pred hcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 999999988765 68889999984
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-56 Score=414.14 Aligned_cols=220 Identities=20% Similarity=0.305 Sum_probs=201.6
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC----hhhhccc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP----LNALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~----~~~~~~~ 113 (515)
++++++|++++| ++.++|+|||++|++||+++|+||||||||||||+|.|+.+|++|+|.++|+++. ....|++
T Consensus 1 ~mi~i~~l~K~f--g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 1 MMIEIKNLSKSF--GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred CeEEEEeeeEEe--CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 479999999987 7889999999999999999999999999999999999999999999999998763 2457899
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
+|+|+|+..+||++||.||+.++...-.. ..+.++++++.++|+++||.+.+|.+|.+|||||||||+|||||+.+|
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~---~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P 155 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKK---LSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDP 155 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcC---CCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence 99999999999999999999987643221 235677888999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+++++|||||+|||....++++.+++|+++| .|.|+++|. ..-+.+.+|||++|++|+++..|+++++.
T Consensus 156 ~vmLFDEPTSALDPElv~EVL~vm~~LA~eG------mTMivVTHE-M~FAr~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 156 KVMLFDEPTSALDPELVGEVLDVMKDLAEEG------MTMIIVTHE-MGFAREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred CEEeecCCcccCCHHHHHHHHHHHHHHHHcC------CeEEEEech-hHHHHHhhheEEEeeCCEEEEecCHHHHh
Confidence 9999999999999999999999999999987 888888887 55789999999999999999999988764
No 11
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-53 Score=401.32 Aligned_cols=219 Identities=20% Similarity=0.274 Sum_probs=204.0
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~ 115 (515)
|++++|+++.| +++.+++|+||+|++||+++++|||||||||+||+|.++..|++|+|++||+++.. ..+|++||
T Consensus 1 MI~~~nvsk~y--~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 1 MIEFENVSKRY--GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred Cceeeeeehhc--CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 58999999987 58889999999999999999999999999999999999999999999999999843 46899999
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc--ccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT--QVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
||-|+..+||++||.||+.+-..+.++. +.+.+++++++|+.+||+ ++.+++|++|||||||||.+||||+.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~----k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWD----KERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCC----HHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 9999999999999999999988776543 467788999999999996 4899999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+++++|||+++|||.++.++-+.++++.++- ++|||+++|+ .+|+.+++|||++|++|+++..++|++++
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l-----~kTivfVTHD-idEA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKEL-----GKTIVFVTHD-IDEALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHh-----CCEEEEEecC-HHHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 9999999999999999999999999998763 4899999998 57999999999999999999999999986
No 12
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.6e-52 Score=405.53 Aligned_cols=224 Identities=24% Similarity=0.316 Sum_probs=199.8
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i~ 115 (515)
+|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|.+|+|.++|+++. .+++.+.++
T Consensus 2 ~L~~~~ls~~y--~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGY--GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEE--CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 68999999988 5789999999999999999999999999999999999999999999999999884 356789999
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCE
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADI 195 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~l 195 (515)
||||.......+||.|.+.++..-+.........+..+.+++.|+.+|+.+.+++.+.+|||||||||.|||||+++|++
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~i 159 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPI 159 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCE
Confidence 99999988889999999988743221111112344556789999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 196 LLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 196 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
|+|||||+.||..++.++++++++++++. +.|||+++|++. .+.++||++++|++|++++.|+|++++.
T Consensus 160 LLLDEPTs~LDi~~Q~evl~ll~~l~~~~-----~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 160 LLLDEPTSHLDIAHQIEVLELLRDLNREK-----GLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred EEeCCCccccCHHHHHHHHHHHHHHHHhc-----CCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 99999999999999999999999999652 389999999864 7999999999999999999999988763
No 13
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.9e-51 Score=415.29 Aligned_cols=224 Identities=27% Similarity=0.418 Sum_probs=205.2
Q ss_pred CeEEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccce
Q psy10236 38 PHLQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i 114 (515)
..++++||+++| + ++.+|+||||++++||++||+||||||||||+|+|+|+.+|++|+|.++|.+... ...++++
T Consensus 3 ~~i~~~~l~k~~--~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~i 80 (293)
T COG1131 3 EVIEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80 (293)
T ss_pred ceeeecceEEEe--CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhhe
Confidence 468899999987 5 5889999999999999999999999999999999999999999999999998854 4678899
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
||++|++.+++.+||+|||.|.+.++.... ...+++++++++.+||.+..++++++||+||||||+||+||+++|+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~----~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~ 156 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSK----EEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPE 156 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCCh----hHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999887532 3456789999999999987789999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHHHHH
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFA 273 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~~f~ 273 (515)
+|||||||+|||+.++.++.+.|++++++| ++||++|+|++ .++..+||||++|++|++++.|+++++...+.
T Consensus 157 lliLDEPt~GLDp~~~~~~~~~l~~l~~~g-----~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 157 LLILDEPTSGLDPESRREIWELLRELAKEG-----GVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229 (293)
T ss_pred EEEECCCCcCCCHHHHHHHHHHHHHHHhCC-----CcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhc
Confidence 999999999999999999999999999876 47999999986 58999999999999999999999988776544
No 14
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-52 Score=404.99 Aligned_cols=221 Identities=19% Similarity=0.265 Sum_probs=202.9
Q ss_pred eEEEEeeEEeCCCC---CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh------hh
Q psy10236 39 HLQVRGLEVPPSSK---NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL------NA 109 (515)
Q Consensus 39 ~L~v~~l~~~~~~~---~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~------~~ 109 (515)
|++++++++.|..+ ...+|+|||++|++||+.||+|.||||||||+|+|.++.+|++|+|.++|+++.. ..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 58999999988532 2468999999999999999999999999999999999999999999999988742 35
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHH
Q psy10236 110 LKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCL 189 (515)
Q Consensus 110 ~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL 189 (515)
.|++||+++|+..++...||.||+.|+.++.+.+ +.+.++++.++++.+||++..+++|.+|||||||||+|||||
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~----k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARAL 156 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVP----KAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 156 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCC----HHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHH
Confidence 7889999999999999999999999999887632 577889999999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 190 MSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 190 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+.+|+||++|||||+|||.+...|+++|+++.++- |.||++++|+ ++-+.++||||.||++|++++.|+..+++
T Consensus 157 a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l-----glTIvlITHE-m~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 157 ANNPKILLCDEATSALDPETTQSILELLKDINREL-----GLTIVLITHE-MEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred hcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc-----CCEEEEEech-HHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999998763 4899999998 46789999999999999999999998875
No 15
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.8e-51 Score=389.67 Aligned_cols=223 Identities=22% Similarity=0.331 Sum_probs=202.1
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh------hhh
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL------NAL 110 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~------~~~ 110 (515)
.+.+++++|++++ +++.|++||||+|++||+++|+||||+|||||||+|.|+++|++|+|.++|+++.. ...
T Consensus 6 ~~~I~vr~v~~~f--G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 6 EPLIEVRGVTKSF--GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred cceEEEeeeeeec--CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 5679999999986 78999999999999999999999999999999999999999999999999999832 246
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccc-ccCcccCCChHHHHHHHHHHHH
Q psy10236 111 KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV-LSTRVGRLTTSELKRLSIACCL 189 (515)
Q Consensus 111 ~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSGGerqRv~IA~aL 189 (515)
++++|+++|+..+|..|||.||+.|..+-+.. ..+...++.+..-|+.+||... .+..|.+|||||+||++||||+
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~---lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAi 160 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTK---LPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAI 160 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhcc---CCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHH
Confidence 88999999999999999999999997654332 2345667778888999999877 9999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 190 MSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 190 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+.+|+|+++||||+||||.++..+.+++++++++- +.|+++++|+. ++++.+|||+++|.+|++++.|+++++.
T Consensus 161 aldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~l-----g~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 161 ALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL-----GLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred hcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhh-----CCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999874 47899999984 6899999999999999999999999886
Q ss_pred H
Q psy10236 270 P 270 (515)
Q Consensus 270 ~ 270 (515)
.
T Consensus 235 ~ 235 (263)
T COG1127 235 A 235 (263)
T ss_pred h
Confidence 3
No 16
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-50 Score=393.81 Aligned_cols=223 Identities=19% Similarity=0.309 Sum_probs=192.9
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYV 117 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv 117 (515)
++++++|+++.|. +.++|+||||++++||+++|+||||||||||+|+|.|+++|.+|+|.++|++.....-+.+||||
T Consensus 3 ~~i~v~nl~v~y~--~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYV 80 (254)
T COG1121 3 PMIEVENLTVSYG--NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYV 80 (254)
T ss_pred cEEEEeeeEEEEC--CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEc
Confidence 5799999999984 33699999999999999999999999999999999999999999999999987544445789999
Q ss_pred ecCCCC--CCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCE
Q psy10236 118 RSQSFL--SPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADI 195 (515)
Q Consensus 118 ~q~~~~--~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~l 195 (515)
||...+ -..+||+|.+..+..-+...-.......+++++++|+.+|+.+.+|+++++|||||+|||.|||||+++|++
T Consensus 81 PQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l 160 (254)
T COG1121 81 PQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDL 160 (254)
T ss_pred CcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCE
Confidence 996532 233699999988643322211112334578899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 196 LLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 196 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
|+|||||+|+|+.++..++++|++++++| +||++++|+. ..+.++||+|++| ++++++.|+++++.+
T Consensus 161 llLDEP~~gvD~~~~~~i~~lL~~l~~eg------~tIl~vtHDL-~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 161 LLLDEPFTGVDVAGQKEIYDLLKELRQEG------KTVLMVTHDL-GLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHCC------CEEEEEeCCc-HHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 99999999999999999999999999877 8999999986 5799999999999 567899999988764
No 17
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.5e-51 Score=410.53 Aligned_cols=221 Identities=18% Similarity=0.320 Sum_probs=203.2
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVY 116 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~y 116 (515)
.+|+++||++.| ++..+|+|+|++|++||+++|+||||||||||||+|||+.+|++|+|.++|++++. ...+|++++
T Consensus 2 ~~i~l~~v~K~y--g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 2 AELELKNVRKSF--GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred cEEEEeeeEEEc--CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 369999999988 33339999999999999999999999999999999999999999999999999965 456789999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
|+|+..+||+|||+||+.|+.+.+..+ +.+.+++++++.+.++|++..+++|.+|||||||||+|||||+++|+++
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~----k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~ 155 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVP----KAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVF 155 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCc----hHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999877543 4677899999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
+||||+|+||...+..+...|+++.++- +.|+|.+||+. .|+..++|||++|++|++...|+|.++.+
T Consensus 156 L~DEPlSnLDa~lR~~mr~ei~~lh~~l-----~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 156 LLDEPLSNLDAKLRVLMRSEIKKLHERL-----GTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred EecCchhHhhHHHHHHHHHHHHHHHHhc-----CCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 9999999999999999999999998763 37888888875 58999999999999999999999999864
No 18
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-51 Score=376.72 Aligned_cols=235 Identities=20% Similarity=0.298 Sum_probs=209.8
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC--hhhhccceEE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP--LNALKRRLVY 116 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~--~~~~~~~i~y 116 (515)
||++.+++++|+ ...++++||||+++.||++||+|||||||||+|++|++++.|++|.|+++|.+.. +...+++||.
T Consensus 1 Ml~v~~l~K~y~-~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 1 MLEVTDLTKSYG-SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred Ceeeeehhhhcc-CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 689999999884 2344899999999999999999999999999999999999999999999998873 3457899999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
++.+..++..||++|||.|++++.... ..+.+.+++++.+.|+|.+++|++++++|.|+||||+|||||+++|+++
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~----~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~ 155 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLS----RKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSIL 155 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeE
Confidence 998899999999999999999887543 3567789999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHHHHHhCC
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFAAAD 276 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~~f~~~g 276 (515)
+|||||||||..++..+.+.+++++++| ++||+++|. ..|+..+||||+++++|++|+.|+++++...-
T Consensus 156 vlDEP~sGLDi~~~r~~~dfi~q~k~eg------r~viFSSH~-m~EvealCDrvivlh~Gevv~~gs~~~l~~r~---- 224 (245)
T COG4555 156 VLDEPTSGLDIRTRRKFHDFIKQLKNEG------RAVIFSSHI-MQEVEALCDRVIVLHKGEVVLEGSIEALDART---- 224 (245)
T ss_pred EEcCCCCCccHHHHHHHHHHHHHhhcCC------cEEEEeccc-HHHHHHhhheEEEEecCcEEEcCCHHHHHHHH----
Confidence 9999999999999999999999998876 999999997 67999999999999999999999998876432
Q ss_pred CCCCCCCChhHHHHHhc
Q psy10236 277 YPCPAFKNPSDYYLDLV 293 (515)
Q Consensus 277 ~~~~~~~~~~d~~~~~~ 293 (515)
...|+.+.+....
T Consensus 225 ----~~~~le~~f~~~l 237 (245)
T COG4555 225 ----VLRNLEEIFAFAL 237 (245)
T ss_pred ----hhcCHHHHHHHhh
Confidence 1345555555543
No 19
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7e-51 Score=413.55 Aligned_cols=221 Identities=20% Similarity=0.296 Sum_probs=203.4
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVY 116 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~y 116 (515)
+.++++|++++| ++..+++|+|++|++||+++|+|||||||||||++|||+..|++|+|.++|++++. ...+|.+++
T Consensus 4 ~~l~i~~v~k~y--g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~ 81 (352)
T COG3842 4 PALEIRNVSKSF--GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGM 81 (352)
T ss_pred ceEEEEeeeeec--CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccce
Confidence 579999999987 57889999999999999999999999999999999999999999999999999964 346889999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
|+|+..+||+|||.||+.|+.+++... .+.+.+++++++++.++|++..++++.+|||||||||+|||||+.+|++|
T Consensus 82 VFQ~YALFPHltV~~NVafGLk~~~~~---~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vL 158 (352)
T COG3842 82 VFQSYALFPHMTVEENVAFGLKVRKKL---KKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVL 158 (352)
T ss_pred eecCcccCCCCcHHHHhhhhhhhcCCC---CHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchh
Confidence 999999999999999999998754322 23557789999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
|||||.|+||..-+.++..-|+++.++- |.|.|++||+. .|+..++|||++|++|++...|+|+++.
T Consensus 159 LLDEPlSaLD~kLR~~mr~Elk~lq~~~-----giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 159 LLDEPLSALDAKLREQMRKELKELQREL-----GITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred hhcCcccchhHHHHHHHHHHHHHHHHhc-----CCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHh
Confidence 9999999999999999999999998763 48888888875 5899999999999999999999999984
No 20
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-50 Score=383.39 Aligned_cols=226 Identities=20% Similarity=0.271 Sum_probs=200.5
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh------hhhc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL------NALK 111 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~------~~~~ 111 (515)
.+|+++||++.|+ +++.+|+|||++|++||+++|+||||||||||||+|.|+.+|++|+|.+||.++.. ..+|
T Consensus 2 ~~i~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 2 MMIEVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred ceEEEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4799999999986 67889999999999999999999999999999999999999999999999987732 3578
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHhhcCCCCC----CCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHH
Q psy10236 112 RRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPK----HSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIAC 187 (515)
Q Consensus 112 ~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~----~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~ 187 (515)
+++||++|+..+.+.++|.+|+..+..-+.+.. .....+.+..+-+.|+++|+.+.+.++.++|||||||||+|||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR 160 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR 160 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence 899999999999999999999987643222110 0112455667888999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccc
Q psy10236 188 CLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRD 267 (515)
Q Consensus 188 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~ 267 (515)
||+++|+|+|.|||+++|||.++.++++.|++++++. |.|+|++.|+. +-+.++||||+-|++|+++|+|++++
T Consensus 161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~-----g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~ivfDg~~~e 234 (258)
T COG3638 161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQED-----GITVIVNLHQV-DLAKKYADRIIGLKAGRIVFDGPASE 234 (258)
T ss_pred HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHc-----CCEEEEEechH-HHHHHHHhhheEecCCcEEEeCChhh
Confidence 9999999999999999999999999999999998753 48999999984 57899999999999999999999988
Q ss_pred hHH
Q psy10236 268 MLP 270 (515)
Q Consensus 268 ~~~ 270 (515)
+.+
T Consensus 235 l~~ 237 (258)
T COG3638 235 LTD 237 (258)
T ss_pred hhH
Confidence 654
No 21
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.7e-50 Score=383.67 Aligned_cols=210 Identities=21% Similarity=0.330 Sum_probs=185.7
Q ss_pred eEEEEeeEEeCCCCC--cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh------hh-
Q psy10236 39 HLQVRGLEVPPSSKN--KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL------NA- 109 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~--~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~------~~- 109 (515)
+++++||++.|..+. ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|.++|+++.. ..
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 467999999875433 479999999999999999999999999999999999999999999999988742 12
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccccc-CcccCCChHHHHHHHHHHH
Q psy10236 110 LKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLS-TRVGRLTTSELKRLSIACC 188 (515)
Q Consensus 110 ~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-~~v~~LSGGerqRv~IA~a 188 (515)
.++.+|||+|+..+.|++||.||+.++..+..... ...+++++++++.+||.+..+ ++|.+|||||||||+||||
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~----~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARA 156 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSA----GRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARA 156 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCCh----hHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHH
Confidence 35679999999999999999999999876654321 145677889999999997666 8899999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
|+.+|+|++.||||.+||+.+...++++|++++++. |+|||++||++ ++...|||++.|.+|++
T Consensus 157 L~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~-----g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 157 LINNPKIILADEPTGNLDSKTAKEVLELLRELNKER-----GKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhc-----CCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 999999999999999999999999999999998763 38999999986 68999999999999993
No 22
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-50 Score=384.24 Aligned_cols=209 Identities=23% Similarity=0.290 Sum_probs=189.5
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYV 117 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv 117 (515)
..++++++++.| ++..+|+|+|++|.+||+++|+||||||||||||+|+|+.+|++|+|.++|+++ ......++||
T Consensus 2 ~~l~i~~v~~~f--~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v--~~p~~~~~~v 77 (248)
T COG1116 2 ALLEIEGVSKSF--GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV--TGPGPDIGYV 77 (248)
T ss_pred ceEEEEeeEEEe--CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc--CCCCCCEEEE
Confidence 368999999987 458899999999999999999999999999999999999999999999999987 2346789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|++.++|.+||.||+.++....... +.+.+++++++++.+||.+..+++|++|||||||||+|||||+.+|+||+
T Consensus 78 FQ~~~LlPW~Tv~~NV~l~l~~~~~~----~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLL 153 (248)
T COG1116 78 FQEDALLPWLTVLDNVALGLELRGKS----KAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLL 153 (248)
T ss_pred eccCcccchhhHHhhheehhhccccc----hHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999998775422 34566789999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC--CeEE
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG--GRTM 260 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~--G~iv 260 (515)
||||+++||..++..+.+.|.++.++. ++||+++||+. +|+..++|||++|.+ |++.
T Consensus 154 lDEPFgALDalTR~~lq~~l~~lw~~~-----~~TvllVTHdi-~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 154 LDEPFGALDALTREELQDELLRLWEET-----RKTVLLVTHDV-DEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred EcCCcchhhHHHHHHHHHHHHHHHHhh-----CCEEEEEeCCH-HHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999987753 48999999984 689999999999988 4443
No 23
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=5.2e-49 Score=400.57 Aligned_cols=223 Identities=23% Similarity=0.333 Sum_probs=200.3
Q ss_pred CCcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhcc
Q psy10236 35 EFFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKR 112 (515)
Q Consensus 35 ~~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~ 112 (515)
...++++++||+++| +++.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ...++
T Consensus 3 ~~~~~i~i~~l~k~~--~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~ 80 (306)
T PRK13537 3 MSVAPIDFRNVEKRY--GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQ 80 (306)
T ss_pred CCCceEEEEeEEEEE--CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHh
Confidence 345689999999987 45789999999999999999999999999999999999999999999999998743 34578
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
++||++|+..+++.+||+||+.+.+.++... ..+..++++++++.++|.+..++++++|||||||||+||+||+++
T Consensus 81 ~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 81 RVGVVPQFDNLDPDFTVRENLLVFGRYFGLS----AAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVND 156 (306)
T ss_pred cEEEEeccCcCCCCCcHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999877654321 233456788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
|++|||||||+|||+.++..+.+.|++++++| +|||+++|+. +++.++||||++|++|++++.|+++++..
T Consensus 157 P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g------~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQARHLMWERLRSLLARG------KTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC------CEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999998666 8999999985 58999999999999999999999988753
No 24
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-49 Score=385.97 Aligned_cols=222 Identities=19% Similarity=0.284 Sum_probs=199.7
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCe---eCCh-hhhccce
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGH---SIPL-NALKRRL 114 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~---~~~~-~~~~~~i 114 (515)
+++++|+++.+ +...+++|||++|+.||++|++|||||||||||++|+|+..|++|.|.+||+ +.+. ....++|
T Consensus 2 ~i~i~~~~~~~--~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~V 79 (345)
T COG1118 2 SIRINNVKKRF--GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKV 79 (345)
T ss_pred ceeehhhhhhc--ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcce
Confidence 58889998865 6778999999999999999999999999999999999999999999999999 4433 2346789
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
|||+|+..+|++|||.||+.|+.+.+.. ...+.+.+.++.++|+.+.|++..+++|.+|||||||||++||||+.+|+
T Consensus 80 GfvFQ~YALF~HmtVa~NIAFGl~~~~~--~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 80 GFVFQHYALFPHMTVADNIAFGLKVRKE--RPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred eEEEechhhcccchHHhhhhhccccccc--CCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999877632 22346678899999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
+|+||||+++||..-+.++.+.|+++.++- +.|+++++|++ .|++++||||++|++|+|...|+++++.+
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~-----~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRKLHDRL-----GVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHHHHHhh-----CceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999998762 37788888875 68999999999999999999999999853
No 25
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=5.5e-48 Score=397.34 Aligned_cols=220 Identities=16% Similarity=0.208 Sum_probs=196.3
Q ss_pred eEEEEeeEEeCCCC--CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---h---hh
Q psy10236 39 HLQVRGLEVPPSSK--NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---N---AL 110 (515)
Q Consensus 39 ~L~v~~l~~~~~~~--~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~---~~ 110 (515)
||+++|++++|..+ .+.+|+||||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. . ..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 58999999998432 2479999999999999999999999999999999999999999999999998842 1 24
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH
Q psy10236 111 KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM 190 (515)
Q Consensus 111 ~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~ 190 (515)
+++++|++|+..+++.+||.||+.+....... .+.+.++++.++++.+||.+..++++.+|||||||||+|||||+
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~----~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~ 156 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNT----PKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALA 156 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999987654321 13445677899999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 191 SHADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 191 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
.+|++|||||||++||+.++..++++|++++++ | .|||+++|+. +.+.++||++++|++|++++.|+++++.
T Consensus 157 ~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g------~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 157 SNPKVLLCDEATSALDPATTQSILELLKEINRRLG------LTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999875 5 8999999984 5788999999999999999999988764
No 26
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-48 Score=369.86 Aligned_cols=221 Identities=21% Similarity=0.309 Sum_probs=194.5
Q ss_pred CeEEEEeeEEeCCCCC--cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChh----hhc
Q psy10236 38 PHLQVRGLEVPPSSKN--KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLN----ALK 111 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~--~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~----~~~ 111 (515)
++|+++||++.|..++ .++|+||||++.+||++||+|+||||||||.++|+|+.+|++|+|.++|++.... .+.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 5799999999884322 2499999999999999999999999999999999999999999999999887432 467
Q ss_pred cceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHHH
Q psy10236 112 RRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACC 188 (515)
Q Consensus 112 ~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~a 188 (515)
+.+.+|+|++ .+.|..||++.|.-+...... .+.++++.++++.+||. +.++++|.+||||||||++||||
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~------~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARA 155 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGL------SKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA 155 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCc------cHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHH
Confidence 8899999987 588999999999877654221 23345589999999995 78999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
|+.+|++||||||||+||+..+.+|+++|.+++++. +-|.|+++|+ ..-+..+||||+||++|++++.++.+++
T Consensus 156 L~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~-----~lt~l~IsHd-l~~v~~~cdRi~Vm~~G~ivE~~~~~~l 229 (252)
T COG1124 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER-----GLTYLFISHD-LALVEHMCDRIAVMDNGQIVEIGPTEEL 229 (252)
T ss_pred hccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc-----CceEEEEeCc-HHHHHHHhhheeeeeCCeEEEeechhhh
Confidence 999999999999999999999999999999998864 4789999997 4578999999999999999999999887
Q ss_pred HH
Q psy10236 269 LP 270 (515)
Q Consensus 269 ~~ 270 (515)
.+
T Consensus 230 ~~ 231 (252)
T COG1124 230 LS 231 (252)
T ss_pred hc
Confidence 63
No 27
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.3e-47 Score=394.96 Aligned_cols=221 Identities=21% Similarity=0.311 Sum_probs=198.6
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccce
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRL 114 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i 114 (515)
.++++++||+++| +++.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ...++.+
T Consensus 39 ~~~i~i~nl~k~y--~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 39 TVAIDLAGVSKSY--GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred ceeEEEEEEEEEE--CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 4579999999987 56779999999999999999999999999999999999999999999999998743 3457789
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
||++|+..+++.+||.||+.+....+... ..+..++++++++.+||.+..++++++|||||||||+||+||+++|+
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMS----TREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999866544311 23345567889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
+|||||||+|||+.++..+.+.|++++++| +|||+++|+. +++.++||+|++|++|++++.|+++++..
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g------~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSLLARG------KTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCC------CEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999998766 8999999985 58999999999999999999999988754
No 28
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-48 Score=398.12 Aligned_cols=220 Identities=15% Similarity=0.247 Sum_probs=197.4
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYV 117 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv 117 (515)
+|+++|++++|. +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ...++.++||
T Consensus 3 ~l~i~~l~~~~~-~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 81 (356)
T PRK11650 3 GLKLQAVRKSYD-GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMV 81 (356)
T ss_pred EEEEEeEEEEeC-CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 699999999873 35679999999999999999999999999999999999999999999999998843 2345789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|+..++|++||.||+.|..+.+.. .+.+.+++++++++.+||.+..++++++|||||||||+|||||+.+|++||
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llL 157 (356)
T PRK11650 82 FQNYALYPHMSVRENMAYGLKIRGM----PKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFL 157 (356)
T ss_pred eCCccccCCCCHHHHHHhHHhhcCC----CHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999998654321 134455778999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
|||||++||+.++..+.+.|+++.++. +.|+|+++|++ .++.++||++++|++|+++..|+++++.
T Consensus 158 LDEP~s~LD~~~r~~l~~~l~~l~~~~-----g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 158 FDEPLSNLDAKLRVQMRLEIQRLHRRL-----KTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhc-----CCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 999999999999999999999998752 38999999985 5799999999999999999999998874
No 29
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.1e-47 Score=397.40 Aligned_cols=221 Identities=21% Similarity=0.266 Sum_probs=198.9
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVY 116 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~y 116 (515)
++|+++|++++| +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 3 ~~l~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 3 PYLSIDNIRKRF--GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred cEEEEEEEEEEe--CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 469999999987 45779999999999999999999999999999999999999999999999998843 234678999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
|+|+..+||++||.||+.|....+.. .+.+.+++++++++.+||++..++++.+|||||||||+|||||+.+|++|
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~----~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ll 156 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGM----GRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLL 156 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999998654321 13445678999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
||||||++||+.++.++.+.|+++.++. +.|+|+++|++ .++..+|||+++|++|+++..|+++++.+
T Consensus 157 LLDEP~s~LD~~~r~~l~~~L~~l~~~~-----~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 157 LLDEPLSALDARVREHLRTEIRQLQRRL-----GVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhc-----CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999997752 37999999985 58999999999999999999999988753
No 30
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-47 Score=396.49 Aligned_cols=220 Identities=14% Similarity=0.238 Sum_probs=198.8
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVY 116 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~y 116 (515)
++|+++|++++| +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ...+++++|
T Consensus 5 ~~l~~~~l~~~~--~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 5 NFVVLKNITKRF--GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred cEEEEEeEEEEE--CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 479999999987 45779999999999999999999999999999999999999999999999998853 234678999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
|+|+..++|++||.||+.|..+.+.. .+.+.+++++++++.+||.+..++++.+|||||||||+|||||+.+|++|
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~----~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lL 158 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGV----PKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVL 158 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCC----CHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999998765432 13455678999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
||||||+|||+.++.++.+.|+++.++. +.|+|+++|++ .++.++||||++|++|+++..|+++++.
T Consensus 159 LLDEP~s~LD~~~r~~l~~~l~~l~~~~-----g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 159 LFDEPLSNLDANLRRSMREKIRELQQQF-----NITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhc-----CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999997752 38999999985 5799999999999999999999998874
No 31
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=3.6e-48 Score=354.36 Aligned_cols=214 Identities=18% Similarity=0.259 Sum_probs=196.0
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh------hhhcc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL------NALKR 112 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~------~~~~~ 112 (515)
|++++|+++.|..+ +.+|+||||+|++||++-|+||||||||||||+|.+..+|++|+|.++|.++.. .-+|+
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 58999999999644 779999999999999999999999999999999999999999999999999843 23689
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
+||+|+|+..+.++.||.||+.|+.+..+.+ ..+.++++.++|+.+||.+.++..|.+|||||||||+||||++.+
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~----~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~ 155 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKP----PREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQ 155 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCC----HHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccC
Confidence 9999999999999999999999998876543 466788999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|++||.||||-+|||..+.+|++++.++.+.| +||++.+|+. .-+.++--|++.|++|+++....
T Consensus 156 P~vLlADEPTGNLDp~~s~~im~lfeeinr~G------tTVl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 156 PAVLLADEPTGNLDPDLSWEIMRLFEEINRLG------TTVLMATHDL-ELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred CCeEeecCCCCCCChHHHHHHHHHHHHHhhcC------cEEEEEeccH-HHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999887 8999999974 45677778999999999987654
No 32
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-47 Score=375.26 Aligned_cols=217 Identities=21% Similarity=0.307 Sum_probs=190.9
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh------hhhccc
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL------NALKRR 113 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~------~~~~~~ 113 (515)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ..+++.
T Consensus 1 l~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSF--GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEE--CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 4789999987 45679999999999999999999999999999999999999999999999998742 235678
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
++|++|++.+++.+||.||+.+....... .......+++.++++.+||.+..++++++|||||||||+|||||+.+|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p 155 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTR---LSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDP 155 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999886432211 112334567888999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
++|||||||+|||+.++..+.+.|++++++ | +|||+++|++ .++..+||++++|++|++++.|+++++
T Consensus 156 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~------~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELG------LTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHhcC------cEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999864 5 7999999985 468889999999999999999987765
No 33
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5e-49 Score=362.49 Aligned_cols=222 Identities=18% Similarity=0.303 Sum_probs=199.7
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hhhccc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~~~~~ 113 (515)
+.|.++||.++| ++++++++||++|++||++|++|||||||||.+.++.|+.+|++|.|.+||.+++. ..-|..
T Consensus 3 ~~L~a~~l~K~y--~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSY--KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhh--CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 468999999987 67889999999999999999999999999999999999999999999999999864 234667
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
+||+||+...|..|||+||+....+.+.... ...+.+.+++++|++|+|.+.++++..+||||||||+.|||||+.+|
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~--~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDL--KKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcch--hHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCC
Confidence 9999999999999999999998877654221 12344566889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
+.++||||++|+||.+..+|.++++.|++.| .-|++|-|. .-|...+|||.+++++|+++++|+++++.+
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rg------iGvLITDHN-VREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRG------IGVLITDHN-VRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHhCC------ceEEEcccc-HHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 9999999999999999999999999999876 667777776 558999999999999999999999998863
No 34
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-48 Score=369.08 Aligned_cols=224 Identities=23% Similarity=0.338 Sum_probs=200.7
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hhhccc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~~~~~ 113 (515)
+++++++|++++ ++..+++||||++++||+++||||||||||||+|+|+|.++|++|+|.++|++++. +..+..
T Consensus 3 ~lL~v~~l~k~F--GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 3 PLLEVRGLSKRF--GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred ceeeeccceeec--CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 578999999987 78899999999999999999999999999999999999999999999999999853 234677
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCC--------CCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRR--------PPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSI 185 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~--------~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~I 185 (515)
++.-+|...+|++|||.||+..+...+. +.......+..+++.++|+.+||.+.++++.++||+|||||+.|
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEI 160 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEI 160 (250)
T ss_pred ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHH
Confidence 8888999999999999999998755331 11111235567889999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCc
Q psy10236 186 ACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKR 265 (515)
Q Consensus 186 A~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~ 265 (515)
||||+.+|++|+||||.+||.+..+.++.+.|+++++++ +.||+++-|+ .+-+..+||||+||+.|+++++|+|
T Consensus 161 ArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~-----g~tillIEHd-M~~Vm~l~dri~Vl~~G~~IAeG~P 234 (250)
T COG0411 161 ARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRG-----GVTILLIEHD-MKLVMGLADRIVVLNYGEVIAEGTP 234 (250)
T ss_pred HHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcC-----CcEEEEEEec-cHHHhhhccEEEeccCCcCcccCCH
Confidence 999999999999999999999999999999999999854 4788888887 5689999999999999999999999
Q ss_pred cchH
Q psy10236 266 RDML 269 (515)
Q Consensus 266 ~~~~ 269 (515)
+++.
T Consensus 235 ~eV~ 238 (250)
T COG0411 235 EEVR 238 (250)
T ss_pred HHHh
Confidence 9876
No 35
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-47 Score=371.57 Aligned_cols=222 Identities=21% Similarity=0.292 Sum_probs=199.8
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC----hhhhccc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP----LNALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~----~~~~~~~ 113 (515)
++++++|++++|..+ ..+|+|+|+++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++. ...++++
T Consensus 2 ~~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 2 RMIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred ceEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 478999999998544 68999999999999999999999999999999999999999999999999865 3568899
Q ss_pred eEEEecCC-CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 114 LVYVRSQS-FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 114 i~yv~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
+|||+|++ ..+-.-||.|.+.|+......+ .++.+++++++++.+|+.+.+++.+.+|||||||||+||.+|+.+
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~----~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~ 156 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLP----REEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMG 156 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCC----HHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcC
Confidence 99999986 3445569999999987655432 345788999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
|++|+|||||+|||+..+.++++.+++|.+++ ++|+|+++|+ .+.+..+|||+++|++|+++++|+++++..
T Consensus 157 P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~-----~~tii~~tHd-~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 157 PEILLLDEPTAGLDPKGRRELLELLKKLKEEG-----GKTIIIVTHD-LELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-----CCeEEEEeCc-HHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 99999999999999999999999999999874 4899999998 568999999999999999999999877653
No 36
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=5.3e-47 Score=392.26 Aligned_cols=223 Identities=16% Similarity=0.234 Sum_probs=196.7
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYV 117 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv 117 (515)
+|+++|++++| +++.+|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.++|+
T Consensus 2 ~L~i~~l~~~~--~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 2 SIEIANIKKSF--GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEEe--CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEE
Confidence 58999999987 45679999999999999999999999999999999999999999999999998743 2345789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|+..++|++||.||+.+..............+.+++++++++.+||.+..++++.+|||||||||+|||||+.+|++||
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llL 159 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILL 159 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999876532110011233456788999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
|||||+|||+.++..+.+.|++++++. +.|+|+++|++ .++..+||||++|++|++++.|+++++.
T Consensus 160 LDEP~s~LD~~~r~~l~~~L~~l~~~~-----g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 160 LDEPFGALDAQVRKELRRWLRQLHEEL-----KFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhc-----CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999998752 37999999985 5799999999999999999999998875
No 37
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=5.3e-47 Score=392.96 Aligned_cols=218 Identities=19% Similarity=0.262 Sum_probs=197.1
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCe--eEEEECCeeCCh-hhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKA--FQVILNGHSIPL-NALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~--G~I~~~G~~~~~-~~~~~~i~ 115 (515)
.|+++|++++| +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++.. ...++.++
T Consensus 5 ~l~~~~l~~~~--~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 5 GIRIDHLRVAY--GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred EEEEEEEEEEE--CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 58999999987 45679999999999999999999999999999999999999999 999999998743 23467899
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCE
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADI 195 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~l 195 (515)
||+|+..++|++||+||+.|+...+.. .+.+.+++++++++.+||++..++++++|||||||||+|||||+.+|++
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~----~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~l 158 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKM----PKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCC----CHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998754321 1344566789999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHhC--CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 196 LLLDCPTVFMDIFDTFFLVEFLRGWASG--GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 196 LlLDEPtsgLD~~~~~~i~~~L~~l~~~--g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
|||||||+|||+..+.++.+.|+++.++ | .|+|+++|++ +++..+||||++|++|+++..|+++++.
T Consensus 159 lLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g------~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 159 LLLDEPLSALDANIRANMREEIAALHEELPE------LTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHhCCC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999875 4 7999999985 5789999999999999999999998875
No 38
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=5.3e-47 Score=394.47 Aligned_cols=222 Identities=18% Similarity=0.288 Sum_probs=198.4
Q ss_pred CcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccce
Q psy10236 36 FFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRL 114 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i 114 (515)
..++|+++|++++| +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ...++.+
T Consensus 11 ~~~~L~l~~l~~~~--~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 11 LSPLVELRGISKSF--DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHV 88 (375)
T ss_pred CCceEEEEEEEEEE--CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 34579999999987 45679999999999999999999999999999999999999999999999998743 2346789
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
+||+|+..++|++||.||+.|+...+.. ...+.+++++++++.+||.+..++++.+|||||||||+|||||+.+|+
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ 164 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKT----PAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK 164 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCC----CHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999997654321 123445678999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+|||||||+|||...+..+.+.|+++.++. +.|+|+++|++ .++..+||||++|++|+++..|+++++.
T Consensus 165 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-----g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 165 VLLLDESLSALDYKLRKQMQNELKALQRKL-----GITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-----CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999998752 38999999985 5799999999999999999999998874
No 39
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-46 Score=392.92 Aligned_cols=224 Identities=19% Similarity=0.263 Sum_probs=199.8
Q ss_pred CCCcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhcc
Q psy10236 34 PEFFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKR 112 (515)
Q Consensus 34 ~~~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~ 112 (515)
+...++|+++|++++| +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ...++
T Consensus 14 ~~~~~~l~l~~v~~~~--~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r 91 (377)
T PRK11607 14 KALTPLLEIRNLTKSF--DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQR 91 (377)
T ss_pred ccCCceEEEEeEEEEE--CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHC
Confidence 3345689999999987 45679999999999999999999999999999999999999999999999998743 23567
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
.++||+|+..++|++||.||+.|..+.+.. .+.+.++++.++++.+||.+..++++.+|||||||||+|||||+.+
T Consensus 92 ~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~----~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~ 167 (377)
T PRK11607 92 PINMMFQSYALFPHMTVEQNIAFGLKQDKL----PKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKR 167 (377)
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 899999999999999999999987654321 1344567889999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
|++|||||||++||...+..+.+.|+++.++. +.|+|+++|++ .++..+|||+++|++|+++..|+++++.
T Consensus 168 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-----g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERV-----GVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-----CCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999999999999999999987642 38999999985 5789999999999999999999998875
No 40
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=5.8e-47 Score=366.84 Aligned_cols=210 Identities=17% Similarity=0.222 Sum_probs=184.1
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh------hhhcc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL------NALKR 112 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~------~~~~~ 112 (515)
+++++|++++|..+.+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 488999999884223569999999999999999999999999999999999999999999999998732 12467
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
.++|++|++.+++.+||.||+.+....+.. ......+++.++++.+||.+..++++++|||||||||+|||||+.+
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGV----PPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHK 156 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 899999999999999999999887543321 1223456788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
|++|||||||+|||+.++..+.+.|++++++| +|||+++|++ +++.++||++++|++|++
T Consensus 157 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~------~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 157 PPLLLADEPTGNLDPELSRDIMRLFEEFNRRG------TTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCC------CEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999997655 7999999985 467889999999999974
No 41
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.1e-46 Score=383.42 Aligned_cols=219 Identities=21% Similarity=0.295 Sum_probs=194.7
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccceE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRLV 115 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i~ 115 (515)
.+++++|++++| +++.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ...++.++
T Consensus 3 ~~i~~~~l~~~~--~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~ 80 (303)
T TIGR01288 3 VAIDLVGVSKSY--GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIG 80 (303)
T ss_pred cEEEEEeEEEEe--CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEE
Confidence 369999999987 45679999999999999999999999999999999999999999999999998732 23567899
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCE
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADI 195 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~l 195 (515)
|++|+..+++.+||.||+.+....+.. ......++++++++.+||.+..++++++|||||||||+||+||+.+|++
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 156 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGM----STREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQL 156 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999875543321 1233445678899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 196 LLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 196 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
|||||||+|||+.++..+.+.|++++++| +|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 157 llLDEPt~gLD~~~~~~l~~~l~~~~~~g------~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 223 (303)
T TIGR01288 157 LILDEPTTGLDPHARHLIWERLRSLLARG------KTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALI 223 (303)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCC------CEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999998766 8999999985 4788999999999999999999988765
No 42
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-47 Score=355.97 Aligned_cols=229 Identities=20% Similarity=0.272 Sum_probs=198.9
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCC-----eeEEEECCeeCCh----
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAK-----AFQVILNGHSIPL---- 107 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~-----~G~I~~~G~~~~~---- 107 (515)
.+.++++||++.| +++++|+|||++|++++++|+|||||||||||||++....... +|+|.++|+++..
T Consensus 5 ~~~~~~~~l~~yY--g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 5 IPAIEVRDLNLYY--GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred cceeEecceeEEE--CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 4569999999987 6889999999999999999999999999999999999887643 5999999999843
Q ss_pred -hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHH
Q psy10236 108 -NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKR 182 (515)
Q Consensus 108 -~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqR 182 (515)
..+|+++|+|+|.+..|| +|+.||+.++.++.+.. +.+.++.+++.|+...|. +.+++....||||||||
T Consensus 83 ~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~----~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQR 157 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIK----DKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQR 157 (253)
T ss_pred HHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccc----hHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHH
Confidence 368999999999999999 89999999998877643 145667788888888774 45666777899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
++|||||+.+|+|||||||||+|||.+..+|-+++.+|+++ -|||+++|. +.++.+..|+..++..|++|++
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~-------yTIviVTHn-mqQAaRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKK-------YTIVIVTHN-MQQAARVSDYTAFFYLGELVEF 229 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhc-------cEEEEEeCC-HHHHHHHhHhhhhhcccEEEEE
Confidence 99999999999999999999999999999999999999864 588888886 5689999999999999999999
Q ss_pred cCccchHHHHHhCCCCCCCCCChhHH
Q psy10236 263 GKRRDMLPYFAAADYPCPAFKNPSDY 288 (515)
Q Consensus 263 G~~~~~~~~f~~~g~~~~~~~~~~d~ 288 (515)
|++++++ ..|..+...||
T Consensus 230 g~T~~iF--------~~P~~~~TedY 247 (253)
T COG1117 230 GPTDKIF--------TNPKHKRTEDY 247 (253)
T ss_pred cCHHhhh--------cCccHHHHHHH
Confidence 9999874 34555555555
No 43
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-46 Score=365.87 Aligned_cols=215 Identities=21% Similarity=0.285 Sum_probs=190.3
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccceEEE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRLVYV 117 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i~yv 117 (515)
|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++|+
T Consensus 1 i~~~~~~~~~--~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (220)
T cd03265 1 IEVENLVKKY--GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIV 78 (220)
T ss_pred CEEEEEEEEE--CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEe
Confidence 5789999987 45679999999999999999999999999999999999999999999999988742 2346789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|+..+++.+||.||+.+....+.. ...+..++++++++.+||.+..++++++|||||||||+||+||+.+|+++|
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~lll 154 (220)
T cd03265 79 FQDLSVDDELTGWENLYIHARLYGV----PGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLF 154 (220)
T ss_pred cCCccccccCcHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999887544321 122345678899999999988999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccc
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRD 267 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~ 267 (515)
|||||+|||+.++..+.+.|++++++ | ++||+++|++ .++..+|||+++|++|+++..|++++
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~------~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 155 LDEPTIGLDPQTRAHVWEYIEKLKEEFG------MTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhcC------CEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999999999875 5 7999999985 47888999999999999999887654
No 44
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-46 Score=387.74 Aligned_cols=221 Identities=16% Similarity=0.248 Sum_probs=194.8
Q ss_pred eEEEEeeEEeCCC--CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---h---hh
Q psy10236 39 HLQVRGLEVPPSS--KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---N---AL 110 (515)
Q Consensus 39 ~L~v~~l~~~~~~--~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~---~~ 110 (515)
||+++|++++|.. +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. . ..
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999998842 14679999999999999999999999999999999999999999999999998742 1 24
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH
Q psy10236 111 KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM 190 (515)
Q Consensus 111 ~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~ 190 (515)
++.++|++|+..+++.+||.||+.+....+.. ...+.++++.++++.+||.+..++++.+|||||||||+|||||+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~ 156 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGT----PKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 156 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999987654321 12344567889999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 191 SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 191 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
.+|++|||||||+|||+.++..+.+.|++++++. ++|||+++|+. .++.++||++++|++|++++.|+++++.
T Consensus 157 ~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~-----g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 157 SNPKVLLCDEATSALDPATTRSILELLKDINREL-----GLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-----CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999997652 38999999985 5788999999999999999999987764
No 45
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-46 Score=364.14 Aligned_cols=211 Identities=23% Similarity=0.316 Sum_probs=185.5
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEEe
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYVR 118 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~ 118 (515)
++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.++|++
T Consensus 1 l~~~~l~~~~--~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 78 (213)
T cd03259 1 LELKGLSKTY--GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVF 78 (213)
T ss_pred CeeeeeEEEe--CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEc
Confidence 4789999987 45679999999999999999999999999999999999999999999999998743 22456799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEE
Q psy10236 119 SQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlL 198 (515)
|+..+++.+|+.||+.+....... .....+++++++++.+||.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lll 154 (213)
T cd03259 79 QDYALFPHLTVAENIAFGLKLRGV----PKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLL 154 (213)
T ss_pred CchhhccCCcHHHHHHhHHHHcCC----CHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999899999999999876543221 1233456688899999999989999999999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 199 DCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 199 DEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
||||+|||+.++..+.+.|++++++ | +|||+++|++ .++.++||++++|++|++++.|
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~~~~------~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 155 DEPLSALDAKLREELREELKELQRELG------ITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcC------CEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999764 5 7999999985 4688999999999999998765
No 46
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-47 Score=357.91 Aligned_cols=219 Identities=24% Similarity=0.337 Sum_probs=193.1
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hhhccc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~~~~~ 113 (515)
++|+++||+..| ++.++|++|||++++||+++|+|+||||||||||+|+|+.++.+|+|.++|++++. ...+..
T Consensus 2 ~mL~v~~l~~~Y--G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 2 PMLEVENLSAGY--GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred CceeEEeEeecc--cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 589999999977 67899999999999999999999999999999999999999999999999999953 346789
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHc-CCcccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEEL-GLTQVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
++||||...+||.|||+|||..++..+... ...+...+++.+.| .|.+..+++.++|||||||.++|||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~-----~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDK-----EAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccc-----ccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 999999999999999999999876543321 11222267788887 467889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
|++|+|||||.||-|.-..+|.+.|+++++++ +.||+++-+ ....+.+++||.+||.+|+++++|+.+++.
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~-----g~tIlLVEQ-n~~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEG-----GMTILLVEQ-NARFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcC-----CcEEEEEec-cHHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 99999999999999999999999999999764 357776655 466889999999999999999999998875
No 47
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-46 Score=369.02 Aligned_cols=222 Identities=17% Similarity=0.231 Sum_probs=191.5
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYV 117 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv 117 (515)
+++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.++|+
T Consensus 2 ~l~~~~l~~~~--~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 2 SIEVRNVSKRF--GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEEeEEEEE--CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 48999999987 45679999999999999999999999999999999999999999999999998743 1235679999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|++.+++.+||.||+.+....+............++++++++.+||.+..++++.+|||||||||+||+||+.+|++||
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 159 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLL 159 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999998765432210000122334567889999999988999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
|||||+|||+.++..+.+.|++++++. ++|||+++|++ +++.++||++++|++|++++.|+++++
T Consensus 160 lDEP~~~LD~~~~~~l~~~l~~~~~~~-----~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 160 LDEPFGALDAKVRKELRRWLRRLHDEL-----HVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHc-----CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999998752 27999999986 468899999999999999999988765
No 48
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-46 Score=390.07 Aligned_cols=219 Identities=17% Similarity=0.272 Sum_probs=195.5
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYV 117 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv 117 (515)
+|+++|++++| +++.+|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+++.. ...++.++|+
T Consensus 3 ~l~i~~l~~~~--~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v 80 (369)
T PRK11000 3 SVTLRNVTKAY--GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMV 80 (369)
T ss_pred EEEEEEEEEEe--CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEE
Confidence 58999999987 45679999999999999999999999999999999999999999999999998743 2245679999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|+..+++.+||.||+.+....+.. ...+.+++++++++.+||.+..++++.+|||||||||+|||||+.+|++||
T Consensus 81 ~Q~~~l~~~~tv~eni~~~~~~~~~----~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLL 156 (369)
T PRK11000 81 FQSYALYPHLSVAENMSFGLKLAGA----KKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL 156 (369)
T ss_pred eCCcccCCCCCHHHHHHhHHhhcCC----CHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999987654321 123445678999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
|||||+|||+.++..+.+.|+++.++. +.|+|+++|++ +++..+||++++|++|+++..|+++++.
T Consensus 157 LDEPts~LD~~~~~~l~~~L~~l~~~~-----g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 157 LDEPLSNLDAALRVQMRIEISRLHKRL-----GRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHHh-----CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999997652 27999999985 5789999999999999999999988775
No 49
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2e-46 Score=392.47 Aligned_cols=223 Identities=23% Similarity=0.323 Sum_probs=196.2
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i 114 (515)
++|+++||+++| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. ...++++
T Consensus 2 ~~L~~~nls~~y--~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 2 PMIDVSDLSVEF--GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred ceEEEeeEEEEE--CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 479999999987 46789999999999999999999999999999999999999999999999998742 4567889
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
+||+|+..+++.+||.||+.+....+...........+++++++++.+|+.+..++++.+|||||||||.|||||+++|+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~ 159 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATP 159 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999998754211100000123345678999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+|||||||+|||+.++.+++++|++++++| +|||+++|+. +++.++|||+++|++|++++.|+++++.
T Consensus 160 iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g------~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 160 VLLLDEPTASLDINHQVRTLELVRRLVDDG------KTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhcC------CEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999998755 7999999985 5788999999999999999999998754
No 50
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-47 Score=360.74 Aligned_cols=220 Identities=18% Similarity=0.351 Sum_probs=206.9
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEe
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVR 118 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~ 118 (515)
+|+++++++++ +++.+++|+||++++|||.|++|||||||||.+++|.|++.|++|+|.|+|.+++. ..+.+|||.|
T Consensus 2 ~L~ie~vtK~F--g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~-~~~~rIGyLP 78 (300)
T COG4152 2 ALEIEGVTKSF--GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ-EIKNRIGYLP 78 (300)
T ss_pred ceEEecchhcc--CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh-hhhhhcccCh
Confidence 58999999986 78899999999999999999999999999999999999999999999999999854 4577899999
Q ss_pred cCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEE
Q psy10236 119 SQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlL 198 (515)
.+..++|.+||.|.|.|.+.+++.+ +.+.+++++.+|+++++.....+++.+||.|++|++.+..+++++|+++||
T Consensus 79 EERGLy~k~tv~dql~yla~LkGm~----~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlIL 154 (300)
T COG4152 79 EERGLYPKMTVEDQLKYLAELKGMP----KAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLIL 154 (300)
T ss_pred hhhccCccCcHHHHHHHHHHhcCCc----HHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence 9999999999999999999998754 467788899999999999999999999999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHHHH
Q psy10236 199 DCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYF 272 (515)
Q Consensus 199 DEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~~f 272 (515)
|||+|||||.+.+.+.+.+.+++++| .|||+|+|. +..+.++||++++|++|+.|.+|+.+++...|
T Consensus 155 DEPFSGLDPVN~elLk~~I~~lk~~G------atIifSsH~-Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 155 DEPFSGLDPVNVELLKDAIFELKEEG------ATIIFSSHR-MEHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred cCCccCCChhhHHHHHHHHHHHHhcC------CEEEEecch-HHHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 99999999999999999999999887 899999998 67899999999999999999999999987644
No 51
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.6e-46 Score=380.26 Aligned_cols=218 Identities=17% Similarity=0.282 Sum_probs=195.9
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccceEE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRLVY 116 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i~y 116 (515)
.++++|++++| +++.+|+|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 2 ~l~~~~l~~~~--~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 2 SIRVSSLTKLY--GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEEE--CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEE
Confidence 48999999987 46789999999999999999999999999999999999999999999999998743 345678999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
++|++.+++.+||.||+.+.+.++... ..+..++++++++.+||.+..++++++|||||||||+||+||+.+|++|
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~----~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 155 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMK----GQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVL 155 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999877654321 2334567889999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
||||||+|||+.++..+.+.|+++++ + +|||+++|+. +++.++|||+++|++|++++.|+++++..
T Consensus 156 iLDEPt~gLD~~~~~~l~~~l~~~~~-~------~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 156 ILDEPTTGLDPNQLVEIRNVIKNIGK-D------KTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHhcC-C------CEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999864 4 7999999985 57999999999999999999999988754
No 52
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.6e-46 Score=367.04 Aligned_cols=220 Identities=22% Similarity=0.318 Sum_probs=190.4
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hh-hccceE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NA-LKRRLV 115 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~-~~~~i~ 115 (515)
|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .. .++.++
T Consensus 1 l~~~~l~~~~--~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRF--GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEE--CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 4689999987 45679999999999999999999999999999999999999999999999998743 12 346799
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCC------CchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHH
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKH------SIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCL 189 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~------~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL 189 (515)
|++|++.+++.+||.||+.+.......... .......+++.++++.+||.+..++++++|||||||||+|||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 158 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL 158 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHH
Confidence 999999999999999999886543211100 01223456788999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 190 MSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 190 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
+.+|+++||||||+|||+.++..+.+.|++++++| +|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~------~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERG------ITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC------CEEEEEecCH-HHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 99999999999999999999999999999998755 7999999986 478899999999999999999988765
No 53
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-46 Score=365.53 Aligned_cols=219 Identities=18% Similarity=0.255 Sum_probs=191.3
Q ss_pred eEEEEeeEEeCCCC--CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh------hhh
Q psy10236 39 HLQVRGLEVPPSSK--NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL------NAL 110 (515)
Q Consensus 39 ~L~v~~l~~~~~~~--~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~------~~~ 110 (515)
+|+++|++++|... .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 48899999987321 1279999999999999999999999999999999999999999999999998742 123
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH
Q psy10236 111 KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM 190 (515)
Q Consensus 111 ~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~ 190 (515)
++.++|++|++.+++.+|+.||+.+....+.. ......+.+.++++.+||.+..++++.+|||||||||+||+||+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGV----PKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALA 156 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 67899999999999999999999886543321 12334567889999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 191 SHADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 191 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
.+|+++||||||+|||+.++..+.+.|++++++ | +|||+++|++ +++.++||++++|++|++++.|+++++
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~------~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 157 NNPKVLLCDEATSALDPETTQSILALLRDINRELG------LTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999875 5 8999999985 478889999999999999999987665
No 54
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-46 Score=361.45 Aligned_cols=215 Identities=24% Similarity=0.275 Sum_probs=187.0
Q ss_pred EEEEeeEEeCCCCC--cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEE
Q psy10236 40 LQVRGLEVPPSSKN--KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYV 117 (515)
Q Consensus 40 L~v~~l~~~~~~~~--~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv 117 (515)
++++|+++.|..+. +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++. ..++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~--~~~~~i~~v 78 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT--GPGPDRGYV 78 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc--cccCcEEEE
Confidence 47899999874211 67999999999999999999999999999999999999999999999999875 246789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|++.+++.+|+.||+.+....+.. ......++++++++.+||.+..++++++||||||||++|||||+.+|+++|
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll 154 (220)
T cd03293 79 FQQDALLPWLTVLDNVALGLELQGV----PKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL 154 (220)
T ss_pred ecccccccCCCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999886543321 122345678899999999988999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe--CCeEEEecCcc
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS--GGRTMYSGKRR 266 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~--~G~iv~~G~~~ 266 (515)
|||||+|||+.++..+.+.|+++.++. ++|||+++|++ .++.++||++++|+ +|+++..++.+
T Consensus 155 LDEPt~~LD~~~~~~~~~~l~~~~~~~-----~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 155 LDEPFSALDALTREQLQEELLDIWRET-----GKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHc-----CCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999999999999996542 27999999986 46888999999999 79999887653
No 55
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.8e-46 Score=365.81 Aligned_cols=216 Identities=19% Similarity=0.311 Sum_probs=190.1
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hh-hccceE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NA-LKRRLV 115 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~-~~~~i~ 115 (515)
++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .. .++.++
T Consensus 1 l~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRY--GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEe--CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 4789999987 45679999999999999999999999999999999999999999999999998732 12 345799
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCE
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADI 195 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~l 195 (515)
|++|++.+++.+|+.||+.+....+.. ......++++++++.+|+.+..++.+++|||||||||+||+||+.+|++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 154 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGL----SKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF 154 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999876543221 1223445678999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 196 LLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 196 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
|||||||+|||+.++..+.+.|+++++++ +|||+++|++ +++.++||++++|++|+++..|+.+++
T Consensus 155 lllDEPt~~LD~~~~~~~~~~l~~~~~~~------~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 155 LLLDEPFAGVDPIAVQDIQKIIKILKDRG------IGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHCC------CEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 99999999999999999999999998765 7999999986 478999999999999999999987664
No 56
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=4e-46 Score=361.40 Aligned_cols=214 Identities=26% Similarity=0.381 Sum_probs=187.8
Q ss_pred eEEEEeeEEeCCCCC--cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccce
Q psy10236 39 HLQVRGLEVPPSSKN--KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRL 114 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~--~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i 114 (515)
+++++|++++|.... ..+|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.. ..+++.+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 478999999874211 169999999999999999999999999999999999999999999999998743 2456789
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
+|++|++.+++.+||.||+.+....+.. ......+++.++++.+||.+..++++++||||||||++|||||+.+|+
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGL----KGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP 156 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999876543321 123445678899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||||+|||+.++..+.+.|++++++| +|||+++|++ .++..+||++++|++|++++.|
T Consensus 157 illlDEPt~~LD~~~~~~l~~~l~~~~~~~------~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 157 VLLLDEPTTGLDVMATRALREFIRQLRALG------KCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHCC------CEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999997665 7999999986 4788999999999999998754
No 57
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.7e-46 Score=380.32 Aligned_cols=208 Identities=21% Similarity=0.294 Sum_probs=186.9
Q ss_pred CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccceEEEecCCCCCCCCCH
Q psy10236 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRLVYVRSQSFLSPELNV 129 (515)
Q Consensus 52 ~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTv 129 (515)
+++.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ...++.++|++|++.+++.+||
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 45679999999999999999999999999999999999999999999999998743 3456789999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhh
Q psy10236 130 AQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFD 209 (515)
Q Consensus 130 ~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~ 209 (515)
.||+.+.+.++... ....+++++++++.+||.+..++++++|||||||||+||+||+.+|++|||||||+|||+.+
T Consensus 84 ~e~l~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 159 (302)
T TIGR01188 84 RENLEMMGRLYGLP----KDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT 159 (302)
T ss_pred HHHHHHHHHHcCCC----HHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 99999876554321 23345678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 210 TFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 210 ~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
+..+.+.|++++++| +|||+++|+. +++.++||++++|++|++++.|+++++..
T Consensus 160 ~~~l~~~l~~~~~~g------~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 160 RRAIWDYIRALKEEG------VTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HHHHHHHHHHHHhCC------CEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999998766 8999999985 57899999999999999999999887754
No 58
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-46 Score=358.80 Aligned_cols=210 Identities=21% Similarity=0.369 Sum_probs=186.4
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEec
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRS 119 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q 119 (515)
++++|+++.| +++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..++.++|++|
T Consensus 1 l~~~~l~~~~--~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRF--GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-AARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEE--CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH-HHHccEEEecc
Confidence 4789999987 45679999999999999999999999999999999999999999999999988753 45678999999
Q ss_pred CCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEe
Q psy10236 120 QSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLD 199 (515)
Q Consensus 120 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLD 199 (515)
+..+++.+|+.||+.+....+... .....+++.++++.+|+.+..++++.+||||||||++||++|+.+|+++|||
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllD 153 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLK----KEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD 153 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCC----hHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999998865543211 2334567889999999998899999999999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 200 CPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 200 EPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
|||+|||+.++..+.+.|+++++++ +|||+++|++ .++.++||++++|++|++++.|
T Consensus 154 EP~~~LD~~~~~~~~~~l~~~~~~~------~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 154 EPFSGLDPVNVELLKDVIRELARAG------KTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCC------CEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999997665 7999999985 4688899999999999998764
No 59
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.3e-46 Score=361.66 Aligned_cols=217 Identities=27% Similarity=0.376 Sum_probs=189.6
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccceEEE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRLVYV 117 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i~yv 117 (515)
|+++|+++.|..+.+++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 57899999874222679999999999999999999999999999999999999999999999998742 3456779999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|+..+++.+|+.||+.+....+... .....++++++++.+||.+..++.+++||||||||++|||||+.+|++||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 156 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLP----KSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLL 156 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999998865443211 22344678899999999988999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
|||||+|||+.++..+.+.|+++++ + +|||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 157 lDEP~~~LD~~~~~~l~~~l~~~~~-~------~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 157 LDEPTSGLDPASRRAIWDLILEVRK-G------RSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHhc-C------CEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999865 3 68999999864 67889999999999999999987653
No 60
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-45 Score=373.31 Aligned_cols=232 Identities=16% Similarity=0.217 Sum_probs=196.9
Q ss_pred eEEEEeeEEeCCCCC---cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-------h
Q psy10236 39 HLQVRGLEVPPSSKN---KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-------N 108 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~---~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-------~ 108 (515)
||+++|+++.|..+. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 589999999984221 359999999999999999999999999999999999999999999999998731 2
Q ss_pred hhccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHH
Q psy10236 109 ALKRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSI 185 (515)
Q Consensus 109 ~~~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~I 185 (515)
..++.++||+|++ .+++ .||.||+.|....... ...+.++++.++++.+||. +..++.+.+||||||||++|
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvai 155 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGI----PKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAI 155 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCC----CHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHH
Confidence 3567899999986 4554 6999999987643321 1234556788999999996 57899999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCc
Q psy10236 186 ACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKR 265 (515)
Q Consensus 186 A~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~ 265 (515)
|++|+.+|++|||||||+|||+.++..+.+.|++++++| +|||+++|++ .++.++||||++|++|++++.|++
T Consensus 156 A~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g------~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 156 AGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSG------QTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCC------CEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999998765 8999999985 568899999999999999999999
Q ss_pred cchHH---HHHhCCCCCCCC
Q psy10236 266 RDMLP---YFAAADYPCPAF 282 (515)
Q Consensus 266 ~~~~~---~f~~~g~~~~~~ 282 (515)
+++.. .++..|+.+|..
T Consensus 229 ~~~~~~~~~~~~~~~~~p~~ 248 (288)
T PRK13643 229 SDVFQEVDFLKAHELGVPKA 248 (288)
T ss_pred HHHHcCHHHHHHcCCCCChH
Confidence 88753 234556665543
No 61
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.2e-46 Score=364.58 Aligned_cols=218 Identities=17% Similarity=0.258 Sum_probs=191.6
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-----hhhccc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-----NALKRR 113 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-----~~~~~~ 113 (515)
+++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.
T Consensus 1 ~l~~~~l~~~~--~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 1 MIEFKNVSKHF--GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred CEEEEeEEEEE--CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 47899999987 45679999999999999999999999999999999999999999999999998742 234678
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhh-cCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSH-LRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
++|++|+..+++.+||.||+.+... .+.. ......+++.++++.+||++..++++.+||||||||++|||||+.+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 154 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGA----SKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVK 154 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCC----CHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999987542 1111 1233456788999999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
|++++|||||+|||+.++..+.+.|+++++++ +|||+++|++ .++..+||++++|++|++++.|+++++.
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~------~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 155 PKLMLFDEPTSALDPELRHEVLKVMQDLAEEG------MTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999999997665 8999999986 4688899999999999999999877653
No 62
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=6.8e-46 Score=358.47 Aligned_cols=211 Identities=17% Similarity=0.274 Sum_probs=186.0
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEEe
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYVR 118 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~ 118 (515)
++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.++|++
T Consensus 1 i~~~~l~~~~--~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~ 78 (213)
T cd03301 1 VELENVTKRF--GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVF 78 (213)
T ss_pred CEEEeeEEEE--CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEe
Confidence 4789999987 45679999999999999999999999999999999999999999999999998743 12346799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEE
Q psy10236 119 SQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlL 198 (515)
|++.+++.+|+.||+.+....+.. ...+.+++++++++.+|+.+..++++++||||||||++|||+|+.+|+++||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llll 154 (213)
T cd03301 79 QNYALYPHMTVYDNIAFGLKLRKV----PKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLM 154 (213)
T ss_pred cChhhccCCCHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999886543321 1233456788899999999999999999999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 199 DCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 199 DEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
||||+|||+.++..+.+.|++++++ | +|||+++|++ .++.++||++++|++|++++.|
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~~~~------~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 155 DEPLSNLDAKLRVQMRAELKRLQQRLG------TTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcC------CEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999864 4 7999999985 4788899999999999999876
No 63
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-46 Score=365.50 Aligned_cols=221 Identities=20% Similarity=0.283 Sum_probs=189.0
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh------hhhccc
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL------NALKRR 113 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~------~~~~~~ 113 (515)
++++|++++|. +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.
T Consensus 1 l~~~~l~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYP-NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecC-CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 47899999873 22679999999999999999999999999999999999999999999999998742 235678
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCC----CCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRR----PPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCL 189 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~----~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL 189 (515)
++|++|+..+++.+||.||+.+...... ...........+++.++++.+||.+..++++.+|||||||||+||+||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999987532110 000001123345678899999999889999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 190 MSHADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 190 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
+.+|++|||||||+|||+.++..+.+.|++++++ | +|||+++|++ +++..+||++++|++|++++.|+++++
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~------~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEG------ITVIVSLHQV-DLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 9999999999999999999999999999999764 5 7999999986 468889999999999999999988765
No 64
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.1e-45 Score=365.80 Aligned_cols=219 Identities=18% Similarity=0.246 Sum_probs=191.5
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-----------
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----------- 107 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----------- 107 (515)
+++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKF--HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEE--CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 69999999987 35679999999999999999999999999999999999999999999999988742
Q ss_pred hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHH
Q psy10236 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIAC 187 (515)
Q Consensus 108 ~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~ 187 (515)
...++.++|++|++.+++.+|+.||+.+........ ......+++.++++.+||.+..++++++|||||||||+|||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~ 157 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGE---PKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIAR 157 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHH
Confidence 234668999999999999999999998753211111 12334566888999999998889999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccc
Q psy10236 188 CLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRD 267 (515)
Q Consensus 188 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~ 267 (515)
||+.+|++|||||||+|||+.++..+.+.|++++++| ++||+++|++ .++.++||++++|++|++++.|++++
T Consensus 158 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~------~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 230 (250)
T PRK11264 158 ALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEK------RTMVIVTHEM-SFARDVADRAIFMDQGRIVEQGPAKA 230 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcC------CEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999998765 7899999985 46888999999999999999998876
Q ss_pred hH
Q psy10236 268 ML 269 (515)
Q Consensus 268 ~~ 269 (515)
+.
T Consensus 231 ~~ 232 (250)
T PRK11264 231 LF 232 (250)
T ss_pred Hh
Confidence 53
No 65
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-45 Score=370.69 Aligned_cols=220 Identities=15% Similarity=0.217 Sum_probs=190.9
Q ss_pred eEEEEeeEEeCCCC---CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-----hhh
Q psy10236 39 HLQVRGLEVPPSSK---NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-----NAL 110 (515)
Q Consensus 39 ~L~v~~l~~~~~~~---~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-----~~~ 110 (515)
.|+++||++.|..+ .+.+|+||||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 38999999988422 1469999999999999999999999999999999999999999999999998742 245
Q ss_pred ccceEEEecCCC-CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc--ccccCcccCCChHHHHHHHHHH
Q psy10236 111 KRRLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT--QVLSTRVGRLTTSELKRLSIAC 187 (515)
Q Consensus 111 ~~~i~yv~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~v~~LSGGerqRv~IA~ 187 (515)
++.++|++|++. .+...||.||+.+....... ...+..+++.++++.+||. +..++++.+||||||||++||+
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAr 157 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGL----SEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAG 157 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCC----CHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHH
Confidence 678999999863 33457999999986543221 1344556788999999997 6789999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCcc
Q psy10236 188 CLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRR 266 (515)
Q Consensus 188 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~ 266 (515)
||+.+|++|||||||+|||+.++..+.++|++++++ | +|||+++|+. .++.++||||++|++|++++.|+++
T Consensus 158 aL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g------~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYN------MTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999875 5 8999999985 5788899999999999999999988
Q ss_pred chH
Q psy10236 267 DML 269 (515)
Q Consensus 267 ~~~ 269 (515)
++.
T Consensus 231 ~~~ 233 (287)
T PRK13637 231 EVF 233 (287)
T ss_pred HHH
Confidence 764
No 66
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.2e-45 Score=369.51 Aligned_cols=222 Identities=17% Similarity=0.296 Sum_probs=192.5
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---h---hh
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---N---AL 110 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~---~~ 110 (515)
.++|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. . ..
T Consensus 5 ~~~l~~~~l~~~~--~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 5 ANLVDMRGVSFTR--GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred cceEEEeCeEEEE--CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 3579999999987 45679999999999999999999999999999999999999999999999998742 1 23
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH
Q psy10236 111 KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM 190 (515)
Q Consensus 111 ~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~ 190 (515)
++.++|++|+..+++.+||.||+.+........ .....++++.++++.+||.+..++++++|||||||||+|||||+
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~ 159 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQL---PAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA 159 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCC---CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 567999999999999999999998754321111 12233456788999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 191 SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 191 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
.+|++|||||||+|||+.++..+.+.|++++++. ++|||+++|+. .++.++||++++|++|++++.|+++++.
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-----g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 160 LEPDLIMFDEPFVGQDPITMGVLVKLISELNSAL-----GVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-----CcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999997652 27999999985 5788999999999999999999887653
No 67
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=6.1e-46 Score=365.97 Aligned_cols=223 Identities=19% Similarity=0.278 Sum_probs=189.7
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh------hhhcc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL------NALKR 112 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~------~~~~~ 112 (515)
+++++|++++|. +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++
T Consensus 1 ~l~~~~l~~~~~-~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 1 MLEVENLSKVYP-NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred CeEEEeeeeecC-CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 478999999873 25679999999999999999999999999999999999999999999999998742 12467
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCC----CCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHH
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRP----PKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACC 188 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~a 188 (515)
.++|++|+..+++.+||.||+.+....... .........++++.++++.+||.+..++++.+|||||||||+||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 159 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARA 159 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 899999999999999999999764321000 0000112335678889999999988999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
|+.+|++|||||||+|||+.++..+.+.|++++++. ++|||+++|++ .++.++||++++|++|++++.|+++++
T Consensus 160 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-----~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 160 LAQQPDLILADEPIASLDPKTSKQVMDYLKRINKED-----GITVIINLHQV-DLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc-----CCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999999999999997642 27999999986 467889999999999999999987654
No 68
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-45 Score=360.15 Aligned_cols=216 Identities=20% Similarity=0.256 Sum_probs=186.3
Q ss_pred CeEEEEeeEEeCCCCC--cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hh---
Q psy10236 38 PHLQVRGLEVPPSSKN--KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NA--- 109 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~--~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~--- 109 (515)
++++++|+++.|..+. +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 4799999999884222 579999999999999999999999999999999999999999999999998742 11
Q ss_pred h-ccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHH
Q psy10236 110 L-KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACC 188 (515)
Q Consensus 110 ~-~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~a 188 (515)
. ++.++|++|+..+++.+|+.||+.+....... .....++++.++++.+||.+..++++.+||||||||++||+|
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKK----KPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 2 35799999999999999999999886543221 123345678899999999988999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCc
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKR 265 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~ 265 (515)
|+.+|++|||||||+|||+.++..+.+.|++++++ | +|||+++|++. ++.. +|++++|++|+++..++.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g------~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG------TAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC------CEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence 99999999999999999999999999999999763 5 89999999864 4554 589999999999988763
No 69
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-45 Score=368.43 Aligned_cols=219 Identities=16% Similarity=0.175 Sum_probs=190.4
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i 114 (515)
++++++|+++.|. +++.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ...++.+
T Consensus 3 ~~l~~~~l~~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 3 NIIEVEDLHFRYK-DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred ceEEEEEEEEEeC-CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 3799999999874 24569999999999999999999999999999999999999999999999998742 3456789
Q ss_pred EEEecCCC-CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 115 VYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 115 ~yv~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
+|++|++. .++..||.||+.+....... .....++++.++++.+||.+..++++.+|||||||||+|||||+.+|
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p 157 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGL----DKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDP 157 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCC----CHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999863 45568999999876432211 12334567889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
++|||||||+|||+.++.++.+.|++++++| .|||+++|+. +++.++|||+++|++|++++.|+++++
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g------~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 158 DVIVLDEPMAYLDPRGQETLMEILDRLHNQG------KTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999998765 8999999985 467889999999999999999998643
No 70
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.2e-45 Score=360.24 Aligned_cols=214 Identities=20% Similarity=0.253 Sum_probs=185.3
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC-----CCCeeEEEECCeeCCh-----hh
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN-----DAKAFQVILNGHSIPL-----NA 109 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~-----~~~~G~I~~~G~~~~~-----~~ 109 (515)
|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++.. ..
T Consensus 1 i~~~~l~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYY--GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEc--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 5789999987 4567999999999999999999999999999999999999 9999999999998732 23
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCc--ccCCChHHHHHHHHHH
Q psy10236 110 LKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTR--VGRLTTSELKRLSIAC 187 (515)
Q Consensus 110 ~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~--v~~LSGGerqRv~IA~ 187 (515)
.++.++|++|++.++ .+||.||+.+....+... .....++++.++++.+||.+..+++ +.+||||||||++||+
T Consensus 79 ~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~ 154 (227)
T cd03260 79 LRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIK---LKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLAR 154 (227)
T ss_pred HHhhEEEEecCchhc-cccHHHHHHhHHHhcCCC---cHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHH
Confidence 567899999998888 799999998865433211 1122456788899999998877777 5999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccc
Q psy10236 188 CLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRD 267 (515)
Q Consensus 188 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~ 267 (515)
||+.+|++|||||||+|||+.++..+.+.|++++++ +|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 155 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-------~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 155 ALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-------YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-------cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999753 5889999985 46888999999999999999998765
No 71
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2e-46 Score=340.41 Aligned_cols=217 Identities=19% Similarity=0.318 Sum_probs=192.6
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYV 117 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv 117 (515)
++.++++.++|. . .==..+++|..||++||+||||||||||||+|+|...|.+|+|.+||++.+. ....|-++++
T Consensus 1 ~l~L~~V~~~y~--~--~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 1 MLALDDVRFSYG--H--LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred CccccceEEeeC--c--ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 467888988773 2 2346789999999999999999999999999999999999999999999854 3456779999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|+..+|.++||.+|+.++.. |.. .-..+.+++++.++..+||..+.++.|++|||||||||++||+|+++-+||+
T Consensus 77 FQEnNLFaHLtV~qNigLGl~---P~L-kL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilL 152 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLS---PGL-KLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILL 152 (231)
T ss_pred hhccccchhhhhhhhhcccCC---ccc-ccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEE
Confidence 999999999999999988643 111 1135667889999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
||||+|+|||.-+.+++.++.+++++. +.|+++++|||. ++.+++|+++++.+|||.+.|+.+++.
T Consensus 153 LDEPFsALdP~LR~eMl~Lv~~l~~E~-----~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 153 LDEPFSALDPALRAEMLALVSQLCDER-----KMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred ecCchhhcCHHHHHHHHHHHHHHHHhh-----CCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 999999999999999999999998764 489999999985 799999999999999999999988765
No 72
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=8.5e-46 Score=356.62 Aligned_cols=207 Identities=19% Similarity=0.277 Sum_probs=184.2
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEEe
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYVR 118 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~ 118 (515)
|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++
T Consensus 1 l~~~~l~~~~--~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 78 (208)
T cd03268 1 LKTNDLTKTY--GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALI 78 (208)
T ss_pred CEEEEEEEEE--CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEec
Confidence 4789999987 45679999999999999999999999999999999999999999999999987743 23466799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEE
Q psy10236 119 SQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlL 198 (515)
|++.+++.+||.||+.+....+.. .+++++++++.+||.+..++++++|||||||||+||++|+.+|+++||
T Consensus 79 q~~~~~~~~tv~e~l~~~~~~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 150 (208)
T cd03268 79 EAPGFYPNLTARENLRLLARLLGI--------RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLIL 150 (208)
T ss_pred CCCccCccCcHHHHHHHHHHhcCC--------cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999886543210 135678899999999999999999999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 199 DCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 199 DEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
||||+|||+.++..+.+.|+++++++ +|+|+++|++ .++.++||++++|++|++++.|
T Consensus 151 DEPt~~LD~~~~~~l~~~l~~~~~~~------~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 151 DEPTNGLDPDGIKELRELILSLRDQG------ITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCC------CEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999998765 7999999985 4678899999999999998765
No 73
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=8.1e-46 Score=359.21 Aligned_cols=208 Identities=22% Similarity=0.298 Sum_probs=180.5
Q ss_pred EEEEeeEEeCCCCC--cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChh-------hh
Q psy10236 40 LQVRGLEVPPSSKN--KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLN-------AL 110 (515)
Q Consensus 40 L~v~~l~~~~~~~~--~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~-------~~ 110 (515)
|+++|++++|..++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999874221 6799999999999999999999999999999999999999999999999987421 13
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH
Q psy10236 111 KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM 190 (515)
Q Consensus 111 ~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~ 190 (515)
++.++|++|++.+++.+||.||+.+....+.. .....+++++++++.+||.+..++++++|||||||||+|||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 156 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGV----PKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALA 156 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCC----CHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHc
Confidence 46799999999999999999999987544321 12234467889999999998899999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 191 SHADILLLDCPTVFMDIFDTFFLVEFLRGWAS-GGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 191 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
.+|++|||||||+|||+.++..+.+.|+++++ .+ +|||+++|++. ++. +||++++|++|++
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~------~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 157 NDPKIILADEPTGNLDSETGKEVMELLRELNKEAG------TTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC------CeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 99999999999999999999999999999987 35 89999999864 455 9999999999974
No 74
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.5e-45 Score=381.44 Aligned_cols=208 Identities=19% Similarity=0.213 Sum_probs=187.2
Q ss_pred CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhh----ccceEEEecCCCCC
Q psy10236 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NAL----KRRLVYVRSQSFLS 124 (515)
Q Consensus 52 ~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~----~~~i~yv~q~~~~~ 124 (515)
+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+ ++.++||+|+..++
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 56779999999999999999999999999999999999999999999999998843 223 67899999999999
Q ss_pred CCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q psy10236 125 PELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVF 204 (515)
Q Consensus 125 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsg 204 (515)
|++||.||+.+....... .+.+..+++.++++.+||++..++++++|||||||||+|||||+.+|++|||||||+|
T Consensus 84 ~~~TV~eNi~~~~~~~~~----~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGW----PEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred CCCCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999999999987654332 1234567889999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 205 MDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 205 LD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
||+.++..+.+.|++++++. ++|||+++|+. +++.++||||++|++|+++..|+++++.
T Consensus 160 LD~~~r~~l~~~l~~l~~~~-----~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 160 LDPLIRDSMQDELKKLQATL-----QKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred CCHHHHHHHHHHHHHHHHhc-----CCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999997652 38999999985 5789999999999999999999988875
No 75
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-45 Score=368.66 Aligned_cols=220 Identities=19% Similarity=0.271 Sum_probs=192.1
Q ss_pred CeEEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccc
Q psy10236 38 PHLQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~ 113 (515)
++|+++|+++.|..+ .+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++.. ...++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 379999999988432 2469999999999999999999999999999999999999999999999998742 345678
Q ss_pred eEEEecCC-CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 114 LVYVRSQS-FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 114 i~yv~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
++|++|++ ..++.+||.||+.+....... ...+..+++.++++.+||.+..++.+.+||||||||++|||||+.+
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~ 158 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGI----PHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMR 158 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHhCCC----CHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 99999986 467788999999886543221 1234456788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
|++|||||||+|||+.++..+.+.|++++++ | +|||+++|+.. ++ ..|||+++|++|+++..|+++++.
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g------~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 159 PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ------MTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC------CEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999875 5 89999999864 55 589999999999999999988765
No 76
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-45 Score=363.01 Aligned_cols=216 Identities=19% Similarity=0.286 Sum_probs=190.1
Q ss_pred EEEEeeEEeCCCCC-cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceE
Q psy10236 40 LQVRGLEVPPSSKN-KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLV 115 (515)
Q Consensus 40 L~v~~l~~~~~~~~-~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~ 115 (515)
++++|++++|. + +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++
T Consensus 1 l~~~~l~~~~~--~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYG--GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeC--CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 47899999873 3 679999999999999999999999999999999999999999999999998742 24567899
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc--cccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ--VLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
|++|++.+++.+||.||+.+....... ......+++.++++.+||.+ ..++++.+|||||||||+|||||+.+|
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p 154 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKW----PKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADP 154 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999886543321 12334567889999999986 789999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
++|||||||+|||+.++..+.+.|++++++ | ++||+++|++ .++.++||++++|++|++++.|+++++
T Consensus 155 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g------~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELG------KTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHHcC------CEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999865 5 7999999986 468899999999999999999987665
No 77
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.4e-45 Score=358.51 Aligned_cols=214 Identities=22% Similarity=0.305 Sum_probs=187.1
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hh-hccceE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NA-LKRRLV 115 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~-~~~~i~ 115 (515)
|+++|++++| +++.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .. .++.++
T Consensus 1 l~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGY--GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeec--CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 5789999987 45679999999999999999999999999999999999999999999999988742 12 356799
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHc-CCcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEEL-GLTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
|++|+..+++.+|+.||+.+...... .....+++.++++.+ ++.+..++++.+||||||||++|||||+.+|+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~------~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARR------RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcC------chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999988654321 122345567788888 58888899999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
+|||||||+|||+.++..+.+.|+++++++ +|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~------~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEG------VTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCC------CEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 999999999999999999999999997655 7999999985 468899999999999999999887654
No 78
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.6e-45 Score=356.13 Aligned_cols=208 Identities=20% Similarity=0.263 Sum_probs=183.1
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh------hhhcc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL------NALKR 112 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~------~~~~~ 112 (515)
+++++|++++|. +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..+++
T Consensus 1 ~l~~~~l~~~~~-~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 1 MIEFHNVSKAYP-GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred CEEEEeeeEEeC-CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 488999999873 34679999999999999999999999999999999999999999999999998742 12467
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
.++|++|++.+++.+|+.||+.+....+.. .....++++.++++.+||.+..++.+.+|||||||||+|||||+.+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGK----KEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNS 155 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 899999999999999999999886543221 1233456788999999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCe
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~ 258 (515)
|++|||||||+|||+.++..+.+.|+++++++ +|||+++|++ .++.++||++++|++|+
T Consensus 156 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~------~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 156 PPLLLADEPTGNLDPDLSERILDLLKRLNKRG------TTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC------CEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999997665 7999999986 47888999999999985
No 79
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.7e-45 Score=376.60 Aligned_cols=225 Identities=17% Similarity=0.226 Sum_probs=194.2
Q ss_pred cCeEEEEeeEEeCCCC-----------CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeC
Q psy10236 37 FPHLQVRGLEVPPSSK-----------NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI 105 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~-----------~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~ 105 (515)
.++|+++||+++|..+ ...+++||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 4689999999988421 25699999999999999999999999999999999999999999999999987
Q ss_pred Ch------hhhccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCC
Q psy10236 106 PL------NALKRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLT 176 (515)
Q Consensus 106 ~~------~~~~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LS 176 (515)
.. ..+++.++||+|++ .++|.+||.||+.+........ ..+.+.++++.++++.+||. +..++++++||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LS 163 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPK--LSRQEVKDRVKAMMLKVGLLPNLINRYPHEFS 163 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHcCCChHHhcCCcccCC
Confidence 42 12467899999997 5889999999998865432211 12344566788999999994 57899999999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC
Q psy10236 177 TSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG 256 (515)
Q Consensus 177 GGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~ 256 (515)
|||||||+|||||+.+|++||+||||+|||+.++.+++++|++++++. +.|+|+++|+. ..+.++||||++|++
T Consensus 164 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-----~~til~iTHdl-~~~~~~~dri~vl~~ 237 (331)
T PRK15079 164 GGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM-----GLSLIFIAHDL-AVVKHISDRVLVMYL 237 (331)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHc-----CCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998752 27999999985 578889999999999
Q ss_pred CeEEEecCccchH
Q psy10236 257 GRTMYSGKRRDML 269 (515)
Q Consensus 257 G~iv~~G~~~~~~ 269 (515)
|++++.|+++++.
T Consensus 238 G~ive~g~~~~i~ 250 (331)
T PRK15079 238 GHAVELGTYDEVY 250 (331)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999988764
No 80
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-45 Score=369.53 Aligned_cols=219 Identities=17% Similarity=0.237 Sum_probs=189.7
Q ss_pred eEEEEeeEEeCCCC---CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-------h
Q psy10236 39 HLQVRGLEVPPSSK---NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-------N 108 (515)
Q Consensus 39 ~L~v~~l~~~~~~~---~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-------~ 108 (515)
.++++|++++|... ++.+|+||||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 38999999998422 2469999999999999999999999999999999999999999999999998731 2
Q ss_pred hhccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHH
Q psy10236 109 ALKRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSI 185 (515)
Q Consensus 109 ~~~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~I 185 (515)
..++.++|++|++ .++ ..||.||+.+....... ...+.+++++++++.+||. +..++++.+|||||||||+|
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~----~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGV----SEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAI 156 (290)
T ss_pred HHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHH
Confidence 4567899999985 344 57999999887543221 1234456788999999997 67899999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 186 ACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 186 A~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
||||+.+|++|||||||+|||+.++..+.++|++++++ | .|||+++|+. .++.++||||++|++|++++.|+
T Consensus 157 AraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g------~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g~ 229 (290)
T PRK13634 157 AGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKG------LTTVLVTHSM-EDAARYADQIVVMHKGTVFLQGT 229 (290)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999765 5 8999999985 47889999999999999999999
Q ss_pred ccchH
Q psy10236 265 RRDML 269 (515)
Q Consensus 265 ~~~~~ 269 (515)
++++.
T Consensus 230 ~~~~~ 234 (290)
T PRK13634 230 PREIF 234 (290)
T ss_pred HHHHh
Confidence 88764
No 81
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.3e-45 Score=354.68 Aligned_cols=203 Identities=21% Similarity=0.275 Sum_probs=177.8
Q ss_pred EEEeeEEeCCCCC-cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEec
Q psy10236 41 QVRGLEVPPSSKN-KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRS 119 (515)
Q Consensus 41 ~v~~l~~~~~~~~-~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q 119 (515)
+++|++++|. + +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.....++.++|++|
T Consensus 1 ~~~~l~~~~~--~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q 78 (205)
T cd03226 1 RIENISFSYK--KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQ 78 (205)
T ss_pred CcccEEEEeC--CcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEec
Confidence 3678998873 3 679999999999999999999999999999999999999999999999998754455678999999
Q ss_pred CCC-CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEE
Q psy10236 120 QSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198 (515)
Q Consensus 120 ~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlL 198 (515)
++. .+..+|+.||+.+...... ...+++.++++.+||.+..++++.+||||||||++|||||+.+|++|||
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 150 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKELD--------AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIF 150 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhcC--------ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 864 3446799999987543221 1125678899999999999999999999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEE
Q psy10236 199 DCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTM 260 (515)
Q Consensus 199 DEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv 260 (515)
||||+|||+.++..+.+.|++++++| +|||+++|++ .++.++||++++|++|+++
T Consensus 151 DEPt~~LD~~~~~~l~~~l~~~~~~~------~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 151 DEPTSGLDYKNMERVGELIRELAAQG------KAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHCC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999997665 7999999985 4688899999999999975
No 82
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-45 Score=361.77 Aligned_cols=219 Identities=20% Similarity=0.286 Sum_probs=192.3
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hhhccce
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NALKRRL 114 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~~~~~i 114 (515)
+++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.+
T Consensus 3 ~l~~~~l~~~~--~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAY--KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEe--CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 69999999987 45679999999999999999999999999999999999999999999999998742 1245679
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
+|++|++.+++.+||.||+.+....... ....+.+.+++++++.+|+.+..++++++|||||||||+|||||+.+|+
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDD---LSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPK 157 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccc---cCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999876433211 1122345678899999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+|||||||+|||+.++..+.+.|++++++| +|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~g------~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEHLRDSG------LGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhcC------CEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 999999999999999999999999998665 7999999985 4788999999999999999999887653
No 83
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-45 Score=372.34 Aligned_cols=220 Identities=18% Similarity=0.221 Sum_probs=189.6
Q ss_pred eEEEEeeEEeCCCCC---cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---------
Q psy10236 39 HLQVRGLEVPPSSKN---KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP--------- 106 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~---~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~--------- 106 (515)
.|+++|++++|..+. ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 489999999984321 35999999999999999999999999999999999999999999999987541
Q ss_pred ------------------hhhhccceEEEecCC-CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-c
Q psy10236 107 ------------------LNALKRRLVYVRSQS-FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-Q 166 (515)
Q Consensus 107 ------------------~~~~~~~i~yv~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~ 166 (515)
....++.+|||+|++ ..+...||.||+.|....... ...+..+++.++++.+||. +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~----~~~~~~~~~~~~l~~~gL~~~ 157 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGV----SKEEAKKRAAKYIELVGLDES 157 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCC----CHHHHHHHHHHHHHHcCCChh
Confidence 123567899999985 334457999999987543321 1344566789999999996 7
Q ss_pred cccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHh
Q psy10236 167 VLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFT 246 (515)
Q Consensus 167 ~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~ 246 (515)
..++++.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++| +|||+++|+. +++.+
T Consensus 158 ~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g------~tiiivtHd~-~~~~~ 230 (305)
T PRK13651 158 YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQG------KTIILVTHDL-DNVLE 230 (305)
T ss_pred hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEeeCH-HHHHH
Confidence 8999999999999999999999999999999999999999999999999999998666 8999999984 56889
Q ss_pred hccEEEEEeCCeEEEecCccchH
Q psy10236 247 MISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 247 ~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+||||++|++|++++.|+++++.
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999988765
No 84
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3.1e-45 Score=353.97 Aligned_cols=208 Identities=17% Similarity=0.247 Sum_probs=182.4
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh------hhhccc
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL------NALKRR 113 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~------~~~~~~ 113 (515)
++++|+++.|. +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.
T Consensus 1 l~~~~l~~~~~-~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYP-NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 46899999873 23579999999999999999999999999999999999999999999999998742 124678
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
++|++|++.+++.+|+.||+.+....+.. ......++++++++.+||.+..++++++||||||||++|||||+.+|
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGV----PPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSP 155 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999887543321 12334567889999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
+++||||||+|||+.++..+.+.|++++++| +|||+++|++ .++.++||++++|++|++
T Consensus 156 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~------~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 156 TILIADEPTGNLDPDTTWEIMNLLKKINKAG------TTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHcC------CEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999997665 7999999986 467889999999999974
No 85
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4.7e-45 Score=358.35 Aligned_cols=217 Identities=25% Similarity=0.342 Sum_probs=188.8
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccceEE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRLVY 116 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i~y 116 (515)
+++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ...++.++|
T Consensus 1 ~l~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 1 ALEVAGLSFAY--GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred CEEEEeeEEEE--CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 47899999987 45679999999999999999999999999999999999999999999999988742 123357999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
++|++.+++.+|+.||+.+....+.. ......+++.++++.+||.+..++++++||||||||++|||||+.+|+++
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 154 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGL----SRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALL 154 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999888999999999876543321 12234456888999999998899999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHh-CCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWAS-GGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~-~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
||||||+|||+.++..+.+.|+++++ +| +|+|+++|++. ++. .||++++|++|+++..|+++++.
T Consensus 155 llDEP~~~LD~~~~~~l~~~l~~~~~~~~------~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 155 LLDEPTVGLDPASRAAIVAHVRALCRDQG------LSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHHhCC------CEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999975 34 79999999864 455 59999999999999999887654
No 86
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-45 Score=365.99 Aligned_cols=221 Identities=18% Similarity=0.213 Sum_probs=192.2
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i 114 (515)
++++++|+++.|....+.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 5799999999884334569999999999999999999999999999999999999999999999998743 2456789
Q ss_pred EEEecCC-CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 115 VYVRSQS-FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 115 ~yv~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
+|++|++ .+++.+||.||+.+....... ...+..+++.++++.+||.+..++++++|||||||||+|||||+.+|
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGV----PREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQP 159 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCC----CHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 9999997 367778999999886543321 12344567899999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+||||||||+|||+.++..+.+.|++++++. ++|||+++|++. ++. .|||+++|++|++++.|+++++.
T Consensus 160 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~-----~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 160 DIIILDEATSMLDPRGRREVLETVRQLKEQK-----GITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHcC-----CCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999998752 289999999864 455 59999999999999999987765
No 87
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-45 Score=367.89 Aligned_cols=219 Identities=16% Similarity=0.245 Sum_probs=189.3
Q ss_pred eEEEEeeEEeCCCC---CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-------h
Q psy10236 39 HLQVRGLEVPPSSK---NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-------N 108 (515)
Q Consensus 39 ~L~v~~l~~~~~~~---~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-------~ 108 (515)
+++++|+++.|..+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 58999999988422 2569999999999999999999999999999999999999999999999998732 2
Q ss_pred hhccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHH
Q psy10236 109 ALKRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSI 185 (515)
Q Consensus 109 ~~~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~I 185 (515)
..++.++|++|++ .++ .+||.||+.+....+.. ......++++++++.+||. +..++++++|||||||||+|
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~l 156 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGF----SEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAI 156 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHH
Confidence 3466899999986 344 58999999876543221 1234456788999999997 68899999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCc
Q psy10236 186 ACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKR 265 (515)
Q Consensus 186 A~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~ 265 (515)
|+||+.+|++|||||||+|||+.++..+.+.|++++++| +|||+++|+. .++.++||++++|++|+++..|++
T Consensus 157 aral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g------~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 157 AGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAG------HTVILVTHNM-DDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999997665 8999999985 578899999999999999999998
Q ss_pred cchH
Q psy10236 266 RDML 269 (515)
Q Consensus 266 ~~~~ 269 (515)
+++.
T Consensus 230 ~~~~ 233 (287)
T PRK13641 230 KEIF 233 (287)
T ss_pred HHHh
Confidence 7754
No 88
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=6.4e-45 Score=359.83 Aligned_cols=217 Identities=18% Similarity=0.241 Sum_probs=189.3
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCC-----eeEEEECCeeCCh-----h
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAK-----AFQVILNGHSIPL-----N 108 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~-----~G~I~~~G~~~~~-----~ 108 (515)
+++++|++++| +++.+++|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.. .
T Consensus 1 ~l~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 1 AIEIENLNLFY--GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred CEEEEEEEEEE--CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 47899999987 3457999999999999999999999999999999999999988 9999999998742 2
Q ss_pred hhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHHHH
Q psy10236 109 ALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKRLS 184 (515)
Q Consensus 109 ~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqRv~ 184 (515)
..++.++|++|+..+++ +|+.||+.+....+... ...+..+++.++++.+||. +..++++++|||||||||+
T Consensus 79 ~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 154 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIK---DKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLC 154 (247)
T ss_pred HHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCC---CHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHH
Confidence 35678999999998888 99999998865433211 1233456788899999998 7789999999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||||+.+|+++||||||+|||+.++..+.+.|+++++ + +|||+++|++ .++.++||++++|++|+++..|+
T Consensus 155 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~------~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 155 IARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-K------YTIVIVTHNM-QQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c------CeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999975 3 6899999985 46889999999999999999998
Q ss_pred ccchH
Q psy10236 265 RRDML 269 (515)
Q Consensus 265 ~~~~~ 269 (515)
++++.
T Consensus 227 ~~~~~ 231 (247)
T TIGR00972 227 TEQIF 231 (247)
T ss_pred HHHHH
Confidence 87653
No 89
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-45 Score=358.89 Aligned_cols=217 Identities=16% Similarity=0.256 Sum_probs=189.5
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---h-hhccc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---N-ALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~-~~~~~ 113 (515)
++++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. . ..++.
T Consensus 4 ~~l~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 4 VMLSFDKVSAHY--GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred cEEEEEeEEEee--CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 479999999987 45679999999999999999999999999999999999999999999999998743 1 24667
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHc-CCcccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEEL-GLTQVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
++|++|+..+++.+||.||+.+...... .....+++.++++.+ ++.+..++++++||||||||++|||+|+.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~------~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAE------RDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccC------hhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999987542211 122334567778888 587778889999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
|+++||||||+|||+.++..+.+.|++++++| +|||+++|++ .++.++|||+++|++|++++.|+++++.
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~------~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQG------MTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCC------CEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 99999999999999999999999999998766 8999999985 4789999999999999999999987764
No 90
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6.8e-45 Score=361.78 Aligned_cols=219 Identities=19% Similarity=0.235 Sum_probs=191.4
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----------
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---------- 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---------- 107 (515)
.+|+++|+++.| +++.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~--~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRY--GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEE--CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 469999999987 45779999999999999999999999999999999999999999999999987631
Q ss_pred ------hhhccceEEEecCCCCCCCCCHHHHHHHHhh-cCCCCCCCchhhHHHHHHHHHHHcCCcccc-cCcccCCChHH
Q psy10236 108 ------NALKRRLVYVRSQSFLSPELNVAQTLTFYSH-LRRPPKHSIKVTTSEQMGLLIEELGLTQVL-STRVGRLTTSE 179 (515)
Q Consensus 108 ------~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~v~~LSGGe 179 (515)
..+++.++|++|++.+++.+|+.||+.+... .... .....++++.++++.+|+.+.. ++.+.+|||||
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~ 157 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL----SKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQ 157 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHH
Confidence 2346789999999999999999999987432 2211 1233456788999999998764 88899999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 180 LKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 180 rqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
|||++|||||+.+|+++||||||+|||+.++..+.+.|++++++| +|||+++|++ .++..+|||+++|++|++
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g------~tiiivsH~~-~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEG------KTMVVVTHEM-GFARHVSSHVIFLHQGKI 230 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC------CEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999998765 8999999985 468889999999999999
Q ss_pred EEecCccchH
Q psy10236 260 MYSGKRRDML 269 (515)
Q Consensus 260 v~~G~~~~~~ 269 (515)
++.|+++++.
T Consensus 231 ~~~~~~~~~~ 240 (257)
T PRK10619 231 EEEGAPEQLF 240 (257)
T ss_pred EEeCCHHHhh
Confidence 9999887653
No 91
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=370.37 Aligned_cols=220 Identities=16% Similarity=0.219 Sum_probs=190.3
Q ss_pred CeEEEEeeEEeCCCC---CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-------
Q psy10236 38 PHLQVRGLEVPPSSK---NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL------- 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~---~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~------- 107 (515)
++|+++|+++.|..+ ++.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++..
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 579999999998432 2469999999999999999999999999999999999999999999999987632
Q ss_pred ------------hhhccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcc
Q psy10236 108 ------------NALKRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRV 172 (515)
Q Consensus 108 ------------~~~~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 172 (515)
...++.++||+|++ .+++ .||.||+.+....... ...+..+++.++++.+||. +..++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~----~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGV----KKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCC----CHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 23567899999986 4565 5999999886532211 1234456788999999996 6789999
Q ss_pred cCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEE
Q psy10236 173 GRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVL 252 (515)
Q Consensus 173 ~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~ 252 (515)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++| +|||+++|+. +++.++|||++
T Consensus 175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g------~TiiivtHd~-~~~~~~adri~ 247 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANN------KTVFVITHTM-EHVLEVADEVI 247 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCC------CEEEEEecCH-HHHHHhCCEEE
Confidence 9999999999999999999999999999999999999999999999997665 8999999985 46789999999
Q ss_pred EEeCCeEEEecCccchH
Q psy10236 253 LVSGGRTMYSGKRRDML 269 (515)
Q Consensus 253 vL~~G~iv~~G~~~~~~ 269 (515)
+|++|+++..|+++++.
T Consensus 248 vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 248 VMDKGKILKTGTPYEIF 264 (320)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999988764
No 92
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-45 Score=360.38 Aligned_cols=213 Identities=22% Similarity=0.230 Sum_probs=186.9
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEe
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVR 118 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~ 118 (515)
+|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....++|++
T Consensus 1 ml~~~~l~~~~--~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~v~ 76 (255)
T PRK11248 1 MLQISHLYADY--GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG--PGAERGVVF 76 (255)
T ss_pred CEEEEEEEEEe--CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC--CCCcEEEEe
Confidence 58999999987 45679999999999999999999999999999999999999999999999998743 234689999
Q ss_pred cCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEE
Q psy10236 119 SQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlL 198 (515)
|+..+++.+||.||+.+....+.. ......+++.++++.+||.+..++++.+|||||||||+||++|+.+|++|||
T Consensus 77 q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllL 152 (255)
T PRK11248 77 QNEGLLPWRNVQDNVAFGLQLAGV----EKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLL 152 (255)
T ss_pred CCCccCCCCcHHHHHHhHHHHcCC----CHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999876543221 1233456788999999999889999999999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEe--CCeEEEecCcc
Q psy10236 199 DCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVS--GGRTMYSGKRR 266 (515)
Q Consensus 199 DEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~--~G~iv~~G~~~ 266 (515)
||||+|||+.++..+.+.|++++++ | +|||+++|++ .++..+||++++|+ +|+++..++.+
T Consensus 153 DEPt~~LD~~~~~~l~~~L~~~~~~~g------~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 153 DEPFGALDAFTREQMQTLLLKLWQETG------KQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhcC------CEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999998653 4 7999999986 47889999999998 59999987754
No 93
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-45 Score=358.35 Aligned_cols=217 Identities=21% Similarity=0.224 Sum_probs=189.4
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---------hhh
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---------LNA 109 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---------~~~ 109 (515)
+|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++. ...
T Consensus 2 ~l~~~~l~~~~--~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFY--GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEE--CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 58999999987 4567999999999999999999999999999999999999999999999999762 123
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHH-hhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHH
Q psy10236 110 LKRRLVYVRSQSFLSPELNVAQTLTFY-SHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACC 188 (515)
Q Consensus 110 ~~~~i~yv~q~~~~~~~lTv~e~l~~~-~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~a 188 (515)
.++.++|++|++.+++.+|+.||+.+. ...... ......+++.++++.+|+.+..++.+.+||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 155 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGL----SKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARA 155 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 467899999999999999999999753 222211 122334678889999999988999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
|+.+|+++||||||+|||+.++..+.+.|++++++| +|+|+++|++ .++.++||++++|++|++++.|+++++
T Consensus 156 l~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~------~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETG------ITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcC------CEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999999999999999997655 8999999986 467889999999999999999987653
No 94
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-45 Score=352.26 Aligned_cols=209 Identities=19% Similarity=0.337 Sum_probs=183.5
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccceEEE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRLVYV 117 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i~yv 117 (515)
++++|++++| +++.+++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.++|+
T Consensus 1 i~~~~~~~~~--~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 77 (211)
T cd03264 1 LQLENLTKRY--GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYL 77 (211)
T ss_pred CEEEEEEEEE--CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEe
Confidence 4789999987 4567999999999999 999999999999999999999999999999999987642 2456789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|++.+++.+||.||+.+....+... ..+..++++++++.+||.+..++.+++|||||||||+|||||+.+|+++|
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 153 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIP----SKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILI 153 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999998865443211 12335678889999999988999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
|||||+|||+.++..+.+.|+++++ + +|||+++|++ .++.++|||+++|++|++++.|
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~-~------~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 154 VDEPTAGLDPEERIRFRNLLSELGE-D------RIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHhC-C------CEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999975 3 6899999985 4677899999999999998765
No 95
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-45 Score=380.16 Aligned_cols=205 Identities=18% Similarity=0.217 Sum_probs=182.0
Q ss_pred ceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hh----hccceEEEecCCCCCCCC
Q psy10236 55 CFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NA----LKRRLVYVRSQSFLSPEL 127 (515)
Q Consensus 55 ~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~----~~~~i~yv~q~~~~~~~l 127 (515)
.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .. .++.++|++|+..+++.+
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 47999999999999999999999999999999999999999999999998742 11 245799999999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCh
Q psy10236 128 NVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207 (515)
Q Consensus 128 Tv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~ 207 (515)
||.||+.+....+... ..+.++++.++++.+||.+..++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 122 Tv~enl~~~~~~~~~~----~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~ 197 (400)
T PRK10070 122 TVLDNTAFGMELAGIN----AEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDP 197 (400)
T ss_pred CHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 9999999876543211 234456788999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 208 FDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 208 ~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
.++..+.+.|++++++. ++|||+++|+. +++.++||++++|++|+++..|+++++.
T Consensus 198 ~~r~~l~~~L~~l~~~~-----g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 198 LIRTEMQDELVKLQAKH-----QRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred HHHHHHHHHHHHHHHHC-----CCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 99999999999997642 38999999985 5788999999999999999999987764
No 96
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=6.6e-45 Score=354.97 Aligned_cols=215 Identities=19% Similarity=0.293 Sum_probs=181.8
Q ss_pred eEEEEeeEEeCCCCC--cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh------hhh
Q psy10236 39 HLQVRGLEVPPSSKN--KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL------NAL 110 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~--~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~------~~~ 110 (515)
+++++|++++|...+ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 478999999873211 269999999999999999999999999999999999999999999999998742 235
Q ss_pred ccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHH-HHHHHHHcCCc-ccccCcccCCChHHHHHHHHH
Q psy10236 111 KRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQ-MGLLIEELGLT-QVLSTRVGRLTTSELKRLSIA 186 (515)
Q Consensus 111 ~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA 186 (515)
++.++|++|++ .+++.+||+||+.+........ ......+. +.++++.+++. +..++++.+|||||||||+||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL---SKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC---cHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 67899999998 4677899999998765433211 11112122 35789999995 678999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 187 CCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 187 ~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ | +|||+++|++ .++.++||++++|++|+++..|
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~------~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELG------LTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcC------CEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999875 5 7999999986 4678899999999999998754
No 97
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=8.3e-45 Score=353.33 Aligned_cols=211 Identities=17% Similarity=0.198 Sum_probs=184.5
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---h---hhcc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---N---ALKR 112 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~---~~~~ 112 (515)
+|+++|+++.|+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . ..++
T Consensus 1 ~l~~~~l~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 1 MIRFEHVSKAYL-GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred CEEEEeeEEEec-CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 488999999873 34679999999999999999999999999999999999999999999999998732 1 2467
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
.++|++|++.+++.+|+.||+.+....+.. ...+..++++++++.+|+.+..++.+++||||||||++|||||+.+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGA----SGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNK 155 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCC----CHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcC
Confidence 899999999888999999999886543321 1223345678899999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEE
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMY 261 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~ 261 (515)
|++|||||||+|||+.++..+.+.|+++++++ .++|+++|++ +++..+||++++|++|+++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~------~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 156 PAVLLADEPTGNLDDALSEGILRLFEEFNRVG------VTVLMATHDI-GLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999997665 7899999985 47888999999999999864
No 98
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=8.5e-45 Score=357.71 Aligned_cols=221 Identities=18% Similarity=0.239 Sum_probs=190.3
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---h-hhccc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---N-ALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~-~~~~~ 113 (515)
++|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . ..++.
T Consensus 1 ~~i~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 1 PILYLEGLSVSF--DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred CeEEEEeeEEEc--CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 468999999987 45679999999999999999999999999999999999999999999999988742 1 23457
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCC-CC---CCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRP-PK---HSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCL 189 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~-~~---~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL 189 (515)
++|++|++.+++.+||.||+.+....... .. .......+++++++++.+|+.+..++.+++|||||||||+|||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999999999999999886432110 00 001123456788999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 190 MSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 190 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
+.+|++|+|||||+|||+.++..+.+.|+++++ + +|||+++|++ +++.++||++++|++|+++..|+++++
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~------~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-K------HSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-C------CEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 999999999999999999999999999999965 4 7999999985 478889999999999999999987665
No 99
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-45 Score=360.61 Aligned_cols=223 Identities=21% Similarity=0.327 Sum_probs=191.2
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hh-hccc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NA-LKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~-~~~~ 113 (515)
++++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .. .+..
T Consensus 4 ~~l~~~~l~~~~--~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 4 PLLSVSGLMMRF--GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred ceEEEeeEEEEE--CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 479999999987 45689999999999999999999999999999999999999999999999998742 12 3456
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCC----------CCC-CCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRR----------PPK-HSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKR 182 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~----------~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqR 182 (515)
++|++|++.+++.+||.||+.+...... ... .....+..+++.++++.+||.+..++++++||||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 161 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRR 161 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHH
Confidence 8999999999999999999988543110 000 00111233567889999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEE
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMY 261 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~ 261 (515)
|+||+||+.+|++|||||||+|||+.++..+.+.|++++++ | +|||+++|++ .++.++||++++|++|++++
T Consensus 162 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~------~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~ 234 (255)
T PRK11300 162 LEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHN------VTVLLIEHDM-KLVMGISDRIYVVNQGTPLA 234 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcC------CEEEEEeCCH-HHHHHhCCEEEEEECCeEEe
Confidence 99999999999999999999999999999999999999875 5 7999999985 47889999999999999999
Q ss_pred ecCccchH
Q psy10236 262 SGKRRDML 269 (515)
Q Consensus 262 ~G~~~~~~ 269 (515)
.|+++++.
T Consensus 235 ~~~~~~~~ 242 (255)
T PRK11300 235 NGTPEEIR 242 (255)
T ss_pred cCCHHHHh
Confidence 99877653
No 100
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-45 Score=365.78 Aligned_cols=221 Identities=18% Similarity=0.249 Sum_probs=192.3
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC-----hhhhcc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP-----LNALKR 112 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~-----~~~~~~ 112 (515)
++|+++|+++.|. +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++. ...+++
T Consensus 4 ~~l~~~~l~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 4 YILKVEELNYNYS-DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred ceEEEEeEEEEeC-CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4799999999884 3467999999999999999999999999999999999999999999999999873 124567
Q ss_pred ceEEEecCCC-CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHh
Q psy10236 113 RLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMS 191 (515)
Q Consensus 113 ~i~yv~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~ 191 (515)
.++|++|++. .+...||.||+.+....... ......++++++++.+||.+..++++.+||||||||++|||||+.
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~ 158 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKL----PEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 158 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCC----CHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 8999999863 33457999999876433221 123345678899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
+|++|||||||+|||+.++..+.+.|++++++ | +||++++|+. +++.++|||+++|++|++++.|+++++..
T Consensus 159 ~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g------~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 159 EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG------LTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC------CEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999875 5 8999999985 46788999999999999999999887653
No 101
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-45 Score=363.48 Aligned_cols=222 Identities=16% Similarity=0.237 Sum_probs=191.0
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
++|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ...+++.+
T Consensus 10 ~~l~i~~l~~~~--~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 10 TTFALRNVSFRV--PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred ceEEEeeEEEEE--CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 479999999987 4568999999999999999999999999999999999999999999999998863 23456789
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
+|++|+..+++.+|+.||+.+.................++++++++.+||.+..++++++|||||||||+|||||+.+|+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ 167 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSR 167 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99999988889999999998753211100000112334568899999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
+|||||||+|||+.++..+.+.|++++++ | .|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 168 lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~------~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 168 CLLLDEPTSALDIAHQVDVLALVHRLSQERG------LTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcC------CEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 99999999999999999999999999765 4 7999999985 478899999999999999999987664
No 102
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=4.6e-45 Score=352.56 Aligned_cols=207 Identities=20% Similarity=0.297 Sum_probs=181.9
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-----hhhccce
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-----NALKRRL 114 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-----~~~~~~i 114 (515)
++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.+
T Consensus 1 l~~~~l~~~~--~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSF--GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEE--CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 4789999987 44679999999999999999999999999999999999999999999999998732 2356789
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhh-cCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSH-LRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
+|++|+..+++.+|+.||+.+... .+.. ......+++.++++.+|+.+..++++.+||||||||++||+||+.+|
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 154 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGM----SKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNP 154 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCC----CHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987642 1211 12234567888999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
++|||||||+|||+.++..+.+.|++++++| +|||+++|++ .++.++||++++|++|++
T Consensus 155 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~------~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 155 KVMLFDEPTSALDPELVGEVLDVMKDLAEEG------MTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHcC------CEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999998765 7999999985 478899999999999974
No 103
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-45 Score=366.35 Aligned_cols=220 Identities=15% Similarity=0.214 Sum_probs=189.6
Q ss_pred eEEEEeeEEeCCCC---CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-------h
Q psy10236 39 HLQVRGLEVPPSSK---NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-------N 108 (515)
Q Consensus 39 ~L~v~~l~~~~~~~---~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-------~ 108 (515)
.++++|+++.|..+ ++.+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 38999999998422 2469999999999999999999999999999999999999999999999998732 2
Q ss_pred hhccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHH
Q psy10236 109 ALKRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSI 185 (515)
Q Consensus 109 ~~~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~I 185 (515)
..++.++|++|++ .+++ .||.||+.+....... ......+++.++++.+||. +..++.+.+|||||||||+|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~----~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKM----NLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAI 156 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCC----CHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 4577899999985 4554 5999999886543221 1234556788999999997 78899999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCc
Q psy10236 186 ACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKR 265 (515)
Q Consensus 186 A~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~ 265 (515)
||||+.+|++|||||||+|||+.++..+.++|++++++. ++|||+++|+. +++.++|||+++|++|++++.|++
T Consensus 157 araL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~-----g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 157 VSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDE-----NKTIILVSHDM-NEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhC-----CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999997642 38999999985 468889999999999999999998
Q ss_pred cchH
Q psy10236 266 RDML 269 (515)
Q Consensus 266 ~~~~ 269 (515)
+++.
T Consensus 231 ~~~~ 234 (286)
T PRK13646 231 KELF 234 (286)
T ss_pred HHHH
Confidence 7764
No 104
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-45 Score=361.45 Aligned_cols=221 Identities=17% Similarity=0.290 Sum_probs=190.3
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~ 115 (515)
+++++|++++| +++.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ...++.++
T Consensus 2 ~l~~~~l~~~~--~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 2 TLRTENLTVGY--GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEEeEEEEE--CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 58999999987 45679999999999999999999999999999999999999999999999988632 34566799
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCE
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADI 195 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~l 195 (515)
|++|+..+++.+|+.||+.+.................++++++++.+||.+..++++++|||||||||+|||||+.+|++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 159 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPV 159 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999988889999999987531100000000123345678899999999889999999999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 196 LLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 196 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
|||||||+|||+.++..+.+.|++++++| +|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~l~~~~------~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 160 VLLDEPTTYLDINHQVELMRLMRELNTQG------KTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCC------CEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999997665 7999999986 478899999999999999999887665
No 105
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.1e-44 Score=353.57 Aligned_cols=218 Identities=31% Similarity=0.491 Sum_probs=188.4
Q ss_pred eEEEEeeEEeCCCC--CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC---CCeeEEEECCeeCChhhhccc
Q psy10236 39 HLQVRGLEVPPSSK--NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND---AKAFQVILNGHSIPLNALKRR 113 (515)
Q Consensus 39 ~L~v~~l~~~~~~~--~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~---~~~G~I~~~G~~~~~~~~~~~ 113 (515)
.+.++|+++++... .+.+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.....++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 36789999987543 2689999999999999999999999999999999999999 899999999998865556788
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHH-HHHHcCCcccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGL-LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
++|++|++.+++.+||.||+.+......... ........++++ .++.+++.+..++.+++|||||||||+|||+|+.+
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 161 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRK-SSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD 161 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccc-cchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998654332211 011122234555 89999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
|++|||||||+|||+.++..+.+.|+++++++ .|+|+++|++..++.++||++++|++|++++.|
T Consensus 162 p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~------~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 162 PKVLILDEPTSGLDSFTALNLVSTLSQLARRN------RIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC------CEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999997665 799999998655799999999999999998765
No 106
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-44 Score=361.15 Aligned_cols=223 Identities=14% Similarity=0.160 Sum_probs=191.6
Q ss_pred CcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhcc
Q psy10236 36 FFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKR 112 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~ 112 (515)
+.++++++|++++|....+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++
T Consensus 4 ~~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (269)
T PRK13648 4 KNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRK 83 (269)
T ss_pred CCceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh
Confidence 346799999999884323469999999999999999999999999999999999999999999999998742 34567
Q ss_pred ceEEEecCCC-CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHh
Q psy10236 113 RLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMS 191 (515)
Q Consensus 113 ~i~yv~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~ 191 (515)
.++|++|++. +++..|+.+|+.+....... ......++++++++.+|+.+..++++.+||||||||++|||||+.
T Consensus 84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAV----PYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred heeEEEeChHHhcccccHHHHHHhhHHhcCC----CHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 8999999974 67788999999876433211 123344567889999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+|+++||||||+|||+.++..+.+.|++++++. ++|||+++|++. ++.. |||+++|++|++++.|+++++.
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-----~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEH-----NITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-----CCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999997642 279999999864 5654 9999999999999999987764
No 107
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-44 Score=360.25 Aligned_cols=210 Identities=16% Similarity=0.200 Sum_probs=186.6
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEE
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~y 116 (515)
.+.|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..++.++|
T Consensus 10 ~~~l~i~~l~~~~--~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~--~~~~~i~~ 85 (257)
T PRK11247 10 GTPLLLNAVSKRY--GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA--EAREDTRL 85 (257)
T ss_pred CCcEEEEEEEEEE--CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH--HhhCceEE
Confidence 3679999999987 4567999999999999999999999999999999999999999999999998763 35678999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
++|++.+++.+||.||+.+... . ..++++.++++.+||.+..++++.+|||||||||+|||+|+.+|++|
T Consensus 86 v~q~~~l~~~~tv~enl~~~~~--~--------~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 86 MFQDARLLPWKKVIDNVGLGLK--G--------QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred EecCccCCCCCcHHHHHHhccc--c--------hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999987421 0 12356788999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCcc
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRR 266 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~ 266 (515)
||||||+|||+.++..+.+.|++++++. ++|||+++|++ .++.++||++++|++|++++.|+.+
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~-----~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQH-----GFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHc-----CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999986542 27999999985 4678899999999999999988754
No 108
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-44 Score=359.77 Aligned_cols=221 Identities=17% Similarity=0.198 Sum_probs=189.9
Q ss_pred CCCcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-----CeeEEEECCeeCCh-
Q psy10236 34 PEFFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-----KAFQVILNGHSIPL- 107 (515)
Q Consensus 34 ~~~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-----~~G~I~~~G~~~~~- 107 (515)
|...++|+++|+++.| +++.+|+|+||++++||++||+|+||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 7 ~~~~~~l~~~~l~~~~--~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~ 84 (258)
T PRK14268 7 NVAQPQIKVENLNLWY--GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84 (258)
T ss_pred cccceeEEEeeeEEEe--CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence 4456789999999987 456799999999999999999999999999999999999875 79999999988732
Q ss_pred ----hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHH
Q psy10236 108 ----NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSE 179 (515)
Q Consensus 108 ----~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGe 179 (515)
...++.++|++|+..+++ +|+.||+.+....... ......+++.++++.+|+. +..++++.+|||||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 159 (258)
T PRK14268 85 DVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGA----NKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQ 159 (258)
T ss_pred cchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHH
Confidence 234678999999988887 8999999886543221 1223345678899999983 55788999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 180 LKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 180 rqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ + +|||+++|++ .++.++|||+++|++|++
T Consensus 160 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~------~tiiivsH~~-~~~~~~~d~i~~l~~G~i 231 (258)
T PRK14268 160 QQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-D------YTIVIVTHNM-QQAARISDYTGFFLMGEL 231 (258)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-C------CEEEEEECCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999864 4 7899999985 467889999999999999
Q ss_pred EEecCccchH
Q psy10236 260 MYSGKRRDML 269 (515)
Q Consensus 260 v~~G~~~~~~ 269 (515)
++.|+++++.
T Consensus 232 ~~~~~~~~~~ 241 (258)
T PRK14268 232 IEFGQTRQIF 241 (258)
T ss_pred EEeCCHHHHh
Confidence 9999987663
No 109
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.1e-44 Score=352.06 Aligned_cols=211 Identities=19% Similarity=0.318 Sum_probs=180.7
Q ss_pred eEEEEeeEEeCCCC--CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hh---h
Q psy10236 39 HLQVRGLEVPPSSK--NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NA---L 110 (515)
Q Consensus 39 ~L~v~~l~~~~~~~--~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~---~ 110 (515)
.|+++|++++|..+ .+.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .. +
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 37899999988422 2569999999999999999999999999999999999999999999999998742 11 2
Q ss_pred c-cceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHH
Q psy10236 111 K-RRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCL 189 (515)
Q Consensus 111 ~-~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL 189 (515)
+ +.++|++|++.+++.+|++||+.+....+.. ...+..+++.++++.+||.+..++.+++|||||||||+|||+|
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 156 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKK----SVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARAL 156 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 2 5799999999999999999999886543221 1223345678899999999889999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEE
Q psy10236 190 MSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTM 260 (515)
Q Consensus 190 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv 260 (515)
+.+|++|||||||+|||+.++..+.+.|++++++. ++|||+++|++. ++ ..||++++|++|+++
T Consensus 157 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~-----~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL-----NTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-----CCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 99999999999999999999999999999997642 279999999864 45 458999999999975
No 110
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-44 Score=363.25 Aligned_cols=221 Identities=16% Similarity=0.254 Sum_probs=191.3
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i 114 (515)
++++++|+++.|..+++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.+
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 5799999999874335679999999999999999999999999999999999999999999999998742 3457789
Q ss_pred EEEecCCC-CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 115 VYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 115 ~yv~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
+|++|++. .++.+||.||+.+....... .....++++.++++.+||.+..++++.+||||||||++|||||+.+|
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKV----PPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCC----CHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999963 67789999999876432211 12334556889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
++|||||||+|||+.++..+.+.|+++++++ ++|||+++|++. ++ ..||++++|++|+++..|+++++.
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~-----~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTR-----KKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-----CcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999998653 379999999864 45 479999999999999999877654
No 111
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=370.74 Aligned_cols=223 Identities=17% Similarity=0.218 Sum_probs=193.2
Q ss_pred CeEEEEeeEEeCCC--------CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--
Q psy10236 38 PHLQVRGLEVPPSS--------KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-- 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~--------~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-- 107 (515)
++|+++||++.|.. +...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++..
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 57999999998842 12579999999999999999999999999999999999999999999999998742
Q ss_pred ----hhhccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHH
Q psy10236 108 ----NALKRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSEL 180 (515)
Q Consensus 108 ----~~~~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGer 180 (515)
..+++.++||+|++ .+.|.+|+.+++......... ..+.+.++++.++++.+||. ...++++++||||||
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~ 160 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTS---LSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQR 160 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccC---CCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHH
Confidence 13567899999997 588999999999765543211 11334567789999999996 578999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEE
Q psy10236 181 KRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTM 260 (515)
Q Consensus 181 qRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv 260 (515)
|||+|||||+.+|++||+||||+|||..++.+++++|++++++. +.|+|+++|+. ..+.++||+|++|++|+++
T Consensus 161 QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~-----g~til~iTHdl-~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 161 QRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL-----GLSYVFISHDL-SVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred HHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHc-----CCEEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999998752 37999999985 5678899999999999999
Q ss_pred EecCccchH
Q psy10236 261 YSGKRRDML 269 (515)
Q Consensus 261 ~~G~~~~~~ 269 (515)
+.|+++++.
T Consensus 235 e~g~~~~~~ 243 (327)
T PRK11308 235 EKGTKEQIF 243 (327)
T ss_pred EECCHHHHh
Confidence 999988775
No 112
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-44 Score=359.71 Aligned_cols=218 Identities=23% Similarity=0.320 Sum_probs=189.8
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~ 115 (515)
+|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ...++.++
T Consensus 2 ~l~~~~l~~~~--~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRL--GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEe--CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 58999999987 45679999999999999999999999999999999999999999999999988632 23456799
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH-----
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM----- 190 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~----- 190 (515)
|++|+..+++.+||.||+.+....... .....+++++++++.+||.+..++.+++|||||||||+||+||+
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~ 155 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGL----SRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEP 155 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCC----CcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 999998888889999999876432211 11233456788999999998899999999999999999999999
Q ss_pred -hCCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 191 -SHADILLLDCPTVFMDIFDTFFLVEFLRGWA-SGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 191 -~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
.+|++|+|||||+|||+.++..+.+.|++++ ++| +|||+++|++ .++..+||++++|++|++++.|+++++
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~------~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 156 DGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERG------LAVIVVLHDL-NLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC------CEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 5999999999999999999999999999997 445 7999999985 468889999999999999999987665
Q ss_pred H
Q psy10236 269 L 269 (515)
Q Consensus 269 ~ 269 (515)
.
T Consensus 229 ~ 229 (258)
T PRK13548 229 L 229 (258)
T ss_pred h
Confidence 3
No 113
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=363.31 Aligned_cols=218 Identities=13% Similarity=0.191 Sum_probs=189.7
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hhhccce
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NALKRRL 114 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~~~~~i 114 (515)
+++++|++++|. +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.+
T Consensus 1 ml~~~~l~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 1 MIRLENVSYSYP-DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred CEEEEEEEEEcC-CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 488999999873 34569999999999999999999999999999999999999999999999998742 3456789
Q ss_pred EEEecCCC-CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 115 VYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 115 ~yv~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
+|++|++. .+...|+.||+.+....... ......+++.++++.+||.+..++++++|||||||||+||+||+.+|
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCL----PPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEP 155 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCC----CHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999865 46678999999876543211 12344567889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+||||||||+|||+.++..+.+.|++++++| +|||+++|++. ++ ..||++++|++|++++.|+++++.
T Consensus 156 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g------~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKLHEKG------KTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCC------CEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999998665 89999999864 55 569999999999999999987764
No 114
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-45 Score=364.43 Aligned_cols=217 Identities=18% Similarity=0.227 Sum_probs=189.1
Q ss_pred EEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hh----hccc
Q psy10236 41 QVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NA----LKRR 113 (515)
Q Consensus 41 ~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~----~~~~ 113 (515)
.++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .. .++.
T Consensus 26 ~~~~~~~~~--~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKT--GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhc--CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 667888776 56789999999999999999999999999999999999999999999999998742 11 2457
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
++|++|++.+++.+||.||+.+....... ......+++.++++.+||.+..++++++|||||||||+|||||+.+|
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p 179 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGV----PRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDP 179 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999886543321 12334467888999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
++|||||||+|||+.++..+.+.|++++++. ++|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 180 ~illLDEPt~~LD~~~~~~l~~~l~~~~~~~-----g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 180 DILLMDEAFSALDPLIRREMQDELLRLQAEL-----QKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-----CCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999997642 28999999985 4688999999999999999999887654
No 115
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=362.93 Aligned_cols=218 Identities=16% Similarity=0.210 Sum_probs=188.6
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-----hhhccc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-----NALKRR 113 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-----~~~~~~ 113 (515)
||+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.
T Consensus 1 ml~~~~l~~~~--~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 1 MLATSDLWFRY--QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred CeEEEEEEEEc--CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 58999999987 45679999999999999999999999999999999999999999999999998731 234678
Q ss_pred eEEEecCCCC-CCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 114 LVYVRSQSFL-SPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 114 i~yv~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
++|++|++.. +...|+.+|+.+....... ...+..++++++++.+||.+..++++.+||||||||++||++|+.+
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~ 154 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGV----PEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQ 154 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcC
Confidence 9999998652 3456899999876443221 1233445678899999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
|++|||||||+|||+.++..+.+.|++++++| +|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 155 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g------~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 155 ARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG------NHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999998655 7899999985 4688899999999999999999987754
No 116
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=358.65 Aligned_cols=220 Identities=16% Similarity=0.175 Sum_probs=188.5
Q ss_pred CcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-----CeeEEEECCeeCCh---
Q psy10236 36 FFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-----KAFQVILNGHSIPL--- 107 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-----~~G~I~~~G~~~~~--- 107 (515)
..++++++|++++| +++.+|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 4 ~~~~l~~~~l~~~~--~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 4 NEAIIETENLNLFY--TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred CCceEEEeeeEEEe--CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 44589999999987 356799999999999999999999999999999999999987 48999999998631
Q ss_pred --hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCC----cccccCcccCCChHHHH
Q psy10236 108 --NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGL----TQVLSTRVGRLTTSELK 181 (515)
Q Consensus 108 --~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~LSGGerq 181 (515)
...++.++|++|+..+++ +||.||+.+........ .....++++.++++.+++ .+..++++++|||||||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~q 157 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTK---DKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQ 157 (254)
T ss_pred cHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHH
Confidence 235678999999988875 89999998865432211 122345667888999987 45678999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEE
Q psy10236 182 RLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMY 261 (515)
Q Consensus 182 Rv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~ 261 (515)
||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ + +|||+++|++ +++.++|||+++|++|+++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~------~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~ 229 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-S------YTIIIVTHNM-QQAGRISDRTAFFLNGCIEE 229 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-C------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999964 4 7899999986 46889999999999999999
Q ss_pred ecCccchH
Q psy10236 262 SGKRRDML 269 (515)
Q Consensus 262 ~G~~~~~~ 269 (515)
.|+++++.
T Consensus 230 ~g~~~~~~ 237 (254)
T PRK14273 230 ESSTDELF 237 (254)
T ss_pred eCCHHHHH
Confidence 99987764
No 117
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=9.1e-45 Score=350.11 Aligned_cols=207 Identities=20% Similarity=0.264 Sum_probs=178.2
Q ss_pred EEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceEEE
Q psy10236 41 QVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLVYV 117 (515)
Q Consensus 41 ~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~yv 117 (515)
+++|++++|..+.+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..+++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 3688998873222679999999999999999999999999999999999999999999999988742 3456789999
Q ss_pred ecCCC-CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 118 RSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 118 ~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
+|+.. .++.+|+.||+.+....... ......++++++++.+||.+..++++++|||||||||+|||||+.+|++|
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 156 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGL----PEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDIL 156 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99874 46778999999876533211 12233456888999999998899999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCe
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~ 258 (515)
||||||+|||+.++..+.+.|++++++| +|||+++|++ .++..+||++++|++|+
T Consensus 157 llDEPt~~LD~~~~~~~~~~l~~~~~~~------~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 157 LLDEPTAGLDPAGRRELLELLKKLKAEG------KTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHcC------CEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999998765 7999999985 47888999999999985
No 118
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-44 Score=362.59 Aligned_cols=220 Identities=18% Similarity=0.220 Sum_probs=191.3
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i 114 (515)
.+++++|++++|. +++.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ...++.+
T Consensus 2 ~~l~~~~l~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 2 HLIETRDLCYSYS-GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred ceEEEEEEEEEeC-CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 4689999999873 23469999999999999999999999999999999999999999999999998742 3456789
Q ss_pred EEEecCCC-CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 115 VYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 115 ~yv~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
+|++|++. .+...||.||+.+....... .....+++++++++.+||.+..++.+.+||||||||++|||||+.+|
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p 156 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGL----DEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEP 156 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCC----CHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999863 34467999999876543211 12334567889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
++|||||||+|||+.++..+.+.|++++++ | .|||+++|++ +++.++|||+++|++|++++.|+++++.
T Consensus 157 ~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g------~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 157 QVLVLDEPTAGLDPQGVKELIDFLNDLPETYG------MTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC------CEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 999999999999999999999999999875 5 8999999985 4788999999999999999999988775
No 119
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=5.2e-45 Score=352.46 Aligned_cols=211 Identities=22% Similarity=0.303 Sum_probs=178.0
Q ss_pred EEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecC
Q psy10236 41 QVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQ 120 (515)
Q Consensus 41 ~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~ 120 (515)
+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++. ..++.++|++|+
T Consensus 1 ~~~~l~~~~--~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~--~~~~~i~~v~q~ 76 (213)
T cd03235 1 EVEDLTVSY--GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE--KERKRIGYVPQR 76 (213)
T ss_pred CcccceeEE--CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH--HHHhheEEeccc
Confidence 367898887 3467999999999999999999999999999999999999999999999998763 356789999998
Q ss_pred CCCC--CCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEE
Q psy10236 121 SFLS--PELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198 (515)
Q Consensus 121 ~~~~--~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlL 198 (515)
+.+. +.+||.||+.+................+++++++++.+|+.+..++++++||||||||++|||||+.+|++|||
T Consensus 77 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llll 156 (213)
T cd03235 77 RSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLL 156 (213)
T ss_pred cccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 7653 34899999987543211000001123456788999999999889999999999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 199 DCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 199 DEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
||||+|||+.++..+.+.|++++++| +|+|+++|++ .++.++||++++|++| +++.|
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~------~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 157 DEPFAGVDPKTQEDIYELLRELRREG------MTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhcC------CEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999998765 7999999985 4788899999999876 66654
No 120
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-44 Score=361.12 Aligned_cols=225 Identities=18% Similarity=0.251 Sum_probs=192.3
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccc
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRR 113 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~ 113 (515)
..+|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.
T Consensus 5 ~~~l~i~~l~~~~--~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 5 VARLRGEQLTLGY--GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred ccEEEEEEEEEEE--CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 3579999999987 45679999999999999999999999999999999999999999999999998732 334567
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
++|++|+..+++.+|+.||+.+................++++.++++.+||.+..++.+.+||||||||++|||||+.+|
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p 162 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQET 162 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCC
Confidence 99999999999999999999864211100000011233456788999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+++||||||+|||+.++..+.+.|++++++. +.|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 163 ~llllDEPt~gLD~~~~~~l~~~L~~l~~~~-----~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 163 AIMLLDEPTTWLDISHQIDLLELLSELNREK-----GYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHHHhc-----CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999998642 27999999985 4789999999999999999999887654
No 121
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-44 Score=360.73 Aligned_cols=219 Identities=15% Similarity=0.197 Sum_probs=187.6
Q ss_pred eEEEEeeEEeCCCCC---cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-------h
Q psy10236 39 HLQVRGLEVPPSSKN---KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-------N 108 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~---~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-------~ 108 (515)
.|+++|++++|.... +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 389999999884221 469999999999999999999999999999999999999999999999998742 2
Q ss_pred hhccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHH
Q psy10236 109 ALKRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSI 185 (515)
Q Consensus 109 ~~~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~I 185 (515)
..++.++|++|+. .+++ .||.||+.+....... .....+++++++++.+||. ...++++++||||||||++|
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~l 156 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGV----SQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAI 156 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 3567899999986 3444 6999999876543221 1233445678899999997 56799999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCc
Q psy10236 186 ACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKR 265 (515)
Q Consensus 186 A~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~ 265 (515)
|+||+.+|++|||||||+|||+.++..+.+.|+++++++ +|||+++|++ .++.++||++++|++|++++.|++
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~------~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 229 (280)
T PRK13649 157 AGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSG------MTIVLVTHLM-DDVANYADFVYVLEKGKLVLSGKP 229 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCC------CEEEEEeccH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999997655 7999999985 468889999999999999999998
Q ss_pred cchH
Q psy10236 266 RDML 269 (515)
Q Consensus 266 ~~~~ 269 (515)
+++.
T Consensus 230 ~~~~ 233 (280)
T PRK13649 230 KDIF 233 (280)
T ss_pred HHHh
Confidence 7764
No 122
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.9e-44 Score=350.78 Aligned_cols=214 Identities=23% Similarity=0.289 Sum_probs=183.7
Q ss_pred CeEEEEeeEEeCCCCC--cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hh---
Q psy10236 38 PHLQVRGLEVPPSSKN--KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NA--- 109 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~--~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~--- 109 (515)
++|+++|++++|..+. +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 5799999999884322 359999999999999999999999999999999999999999999999998742 11
Q ss_pred h-ccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHH
Q psy10236 110 L-KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACC 188 (515)
Q Consensus 110 ~-~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~a 188 (515)
. ++.++|++|+..+++.+|+.||+.+....+.. .....++++.++++.+||.+..++++.+||||||||++||+|
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGE----SSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHH
Confidence 1 35799999999999999999999876433221 123345678899999999988999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
|+.+|++|||||||+|||+.++..+.+.|++++++. ++|||+++|++. ++ +.||++++|++|++++.
T Consensus 161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-----~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREH-----GTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-----CCEEEEEecCHH-HH-HhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999997652 279999999864 45 56999999999998753
No 123
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-44 Score=356.24 Aligned_cols=220 Identities=21% Similarity=0.278 Sum_probs=189.3
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-----CeeEEEECCeeCCh---hh
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-----KAFQVILNGHSIPL---NA 109 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-----~~G~I~~~G~~~~~---~~ 109 (515)
++++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. ..
T Consensus 2 ~~l~~~~l~~~~--~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 2 NKIEIRDLKVSF--GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred ceEEEEeeEEEE--CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 369999999987 456799999999999999999999999999999999999874 69999999998742 34
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHHHHH
Q psy10236 110 LKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKRLSI 185 (515)
Q Consensus 110 ~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqRv~I 185 (515)
+++.++|++|++.+++.+||.||+.+....+... ....+..+++.++++.+||. +..++.+.+|||||||||+|
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 157 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLV--KSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCI 157 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhcccc--CCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHH
Confidence 5678999999998899999999998865432211 01233456788899999985 35788999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCc
Q psy10236 186 ACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKR 265 (515)
Q Consensus 186 A~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~ 265 (515)
||||+.+|++++|||||+|||+.++..+.+.|+++++ + +|+|+++|++ .++.++||++++|++|+++..|++
T Consensus 158 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~------~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 229 (250)
T PRK14247 158 ARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-D------MTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPT 229 (250)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C------CEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCH
Confidence 9999999999999999999999999999999999864 4 7899999986 467889999999999999999998
Q ss_pred cchH
Q psy10236 266 RDML 269 (515)
Q Consensus 266 ~~~~ 269 (515)
+++.
T Consensus 230 ~~~~ 233 (250)
T PRK14247 230 REVF 233 (250)
T ss_pred HHHH
Confidence 7764
No 124
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-44 Score=359.63 Aligned_cols=219 Identities=16% Similarity=0.240 Sum_probs=189.6
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-----hhhccc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-----NALKRR 113 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-----~~~~~~ 113 (515)
+|+++|++++|. +++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.
T Consensus 1 ~l~~~~l~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 1 ILETRDLKYSYP-DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred CEEEEEEEEEeC-CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 488999999874 34569999999999999999999999999999999999999999999999998731 235678
Q ss_pred eEEEecCCC-CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 114 LVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 114 i~yv~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
++|++|++. .+..+||.||+.+....... ...+..+++.++++.+||.+..++++++||||||||++|||||+.+
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~ 155 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGL----SKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMK 155 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999863 33457999999875432211 1233456788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
|++++|||||+|||+.++..+.+.|++++++| .|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 156 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~------~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNKEG------ITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC------CEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999998655 8999999985 4688899999999999999999988765
No 125
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.4e-44 Score=356.80 Aligned_cols=219 Identities=18% Similarity=0.188 Sum_probs=189.8
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh------------
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL------------ 107 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~------------ 107 (515)
++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 i~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRF--GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEe--CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 4789999987 35679999999999999999999999999999999999999999999999987631
Q ss_pred ----hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHH
Q psy10236 108 ----NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRL 183 (515)
Q Consensus 108 ----~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv 183 (515)
...++.++|++|+..+++.+|+.||+.+....... .......+++.++++.+|+.+..++.+.+||||||||+
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 155 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLG---MARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRV 155 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHH
Confidence 13467899999999999999999999875321111 11233445688899999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||+.+|+++||||||+|||+.++..+.+.|++++++. ++|+|+++|++ .++..+|||+++|++|++++.|
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-----~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 229 (252)
T TIGR03005 156 AIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEH-----DLTMLLVTHEM-GFAREFADRVCFFDKGRIVEQG 229 (252)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-----CcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999998752 28999999986 4688899999999999999999
Q ss_pred CccchH
Q psy10236 264 KRRDML 269 (515)
Q Consensus 264 ~~~~~~ 269 (515)
+.+++.
T Consensus 230 ~~~~~~ 235 (252)
T TIGR03005 230 KPDEIF 235 (252)
T ss_pred CHHHHh
Confidence 877653
No 126
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-44 Score=356.01 Aligned_cols=220 Identities=20% Similarity=0.218 Sum_probs=188.9
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-----CeeEEEECCeeCC-----h
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-----KAFQVILNGHSIP-----L 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-----~~G~I~~~G~~~~-----~ 107 (515)
++|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. .
T Consensus 3 ~~l~~~~l~~~~--~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 3 FAIETVNLRVYY--GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred ceEEEEeEEEEe--CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 579999999987 456799999999999999999999999999999999999987 4999999999874 1
Q ss_pred hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHHH
Q psy10236 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKRL 183 (515)
Q Consensus 108 ~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqRv 183 (515)
..+++.++|++|++.+++.+||.||+.+....+... .......++++++++.+|+. +..++.+.+||||||||+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLV--KSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRL 158 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCcc--CCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHH
Confidence 235678999999999999999999998765432210 01223345678899999984 457889999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||+.+|+++||||||+|||+.++..+.+.|+++++ + +|||+++|++ .++..+||++++|++|++++.|
T Consensus 159 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~------~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 230 (253)
T PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-E------YTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVG 230 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-C------CEEEEEECCH-HHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999964 4 7899999985 4688899999999999999999
Q ss_pred CccchH
Q psy10236 264 KRRDML 269 (515)
Q Consensus 264 ~~~~~~ 269 (515)
+++++.
T Consensus 231 ~~~~~~ 236 (253)
T PRK14267 231 PTRKVF 236 (253)
T ss_pred CHHHHH
Confidence 987654
No 127
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.8e-44 Score=352.76 Aligned_cols=214 Identities=23% Similarity=0.286 Sum_probs=185.8
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---h-hhccceE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---N-ALKRRLV 115 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~-~~~~~i~ 115 (515)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . ..++.++
T Consensus 1 l~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYY--GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEe--CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 5789999987 45679999999999999999999999999999999999999999999999998742 1 2356799
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcC-CcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELG-LTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
|++|+..+++.+|+.||+.+....+.. ...+.++++++.++ +.+..++++.+||||||||++|||+|+.+|+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~-------~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPR-------RSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPK 151 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCc-------chHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999876543211 11234567788887 6778899999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
++||||||+|||+.++..+.+.|++++++. ++|||+++|++ .++..+||++++|++|+++..|+.+++
T Consensus 152 illlDEPt~~LD~~~~~~l~~~l~~~~~~~-----~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 152 LLLLDEPTEGIQPSIIKDIGRVIRRLRAEG-----GMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHcC-----CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999999999999998742 27999999985 478889999999999999999988765
No 128
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.2e-44 Score=357.92 Aligned_cols=220 Identities=20% Similarity=0.262 Sum_probs=188.9
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceEE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLVY 116 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~y 116 (515)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.++|
T Consensus 2 l~~~~l~~~~--~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSA--GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEE--CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 6899999987 45689999999999999999999999999999999999999999999999988742 344567999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
++|+..+++.+||.||+.+..............+..+++.++++.+|+.+..++++.+||||||||++||+||+.+|+++
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 159 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLL 159 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998788889999999875311000000011223456888999999998899999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
||||||+|||+.++..+.+.|++++++| .|||+++|++ .++.++||++++|++|+++..|+.+++
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~------~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 160 LLDEPTNHLDVRAQLETLALVRELAATG------VTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHhcC------CEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 9999999999999999999999998655 7999999986 468899999999999999999987665
No 129
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-44 Score=367.59 Aligned_cols=222 Identities=19% Similarity=0.239 Sum_probs=189.2
Q ss_pred eEEEEeeEEeCCCCC--cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC----CCeeEEEECCeeCCh---hh
Q psy10236 39 HLQVRGLEVPPSSKN--KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND----AKAFQVILNGHSIPL---NA 109 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~--~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~----~~~G~I~~~G~~~~~---~~ 109 (515)
+|+++||++.|..+. ..+|+||||+|++||++||+|+||||||||+++|+|+++ +++|+|.++|+++.. ..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 689999999884322 469999999999999999999999999999999999997 489999999998742 22
Q ss_pred ----hccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc---cccCcccCCChHHH
Q psy10236 110 ----LKRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ---VLSTRVGRLTTSEL 180 (515)
Q Consensus 110 ----~~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSGGer 180 (515)
.++.++||+|++ .+.|.+|+.+++......... ....+.++++.++++.+||.+ ..++++++||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~---~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~ 159 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQG---GNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMS 159 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHH
Confidence 224699999997 578999999988765443211 123445677899999999964 57899999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEE
Q psy10236 181 KRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTM 260 (515)
Q Consensus 181 qRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv 260 (515)
|||+|||||+.+|++||+||||+|||+.++.+++++|++++++. +.|+|+++|+. ..+.++||||++|++|+++
T Consensus 160 QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~-----g~til~iTHdl-~~~~~~adri~vm~~G~iv 233 (326)
T PRK11022 160 QRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKE-----NMALVLITHDL-ALVAEAAHKIIVMYAGQVV 233 (326)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-----CCEEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999998742 37999999985 4678899999999999999
Q ss_pred EecCccchH
Q psy10236 261 YSGKRRDML 269 (515)
Q Consensus 261 ~~G~~~~~~ 269 (515)
+.|+++++.
T Consensus 234 e~g~~~~~~ 242 (326)
T PRK11022 234 ETGKAHDIF 242 (326)
T ss_pred EECCHHHHh
Confidence 999988775
No 130
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.5e-44 Score=358.27 Aligned_cols=221 Identities=17% Similarity=0.244 Sum_probs=189.7
Q ss_pred eEEEEeeEEeCCCC-------CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---h
Q psy10236 39 HLQVRGLEVPPSSK-------NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---N 108 (515)
Q Consensus 39 ~L~v~~l~~~~~~~-------~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~ 108 (515)
+|+++|+++.|..+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 58999999988421 4679999999999999999999999999999999999999999999999998742 1
Q ss_pred ---hhccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHH
Q psy10236 109 ---ALKRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKR 182 (515)
Q Consensus 109 ---~~~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqR 182 (515)
..++.++|++|++ .+++.+||.||+.+........ ......+++.++++.+||. ...++++.+||||||||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qr 158 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSL---DESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR 158 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHH
Confidence 2456799999986 4677899999997654321111 1223456788999999996 67899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEE
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMY 261 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~ 261 (515)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++ | +|||+++|++ ..+..+||++++|++|++++
T Consensus 159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g------~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFG------TAYLFITHDL-RLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC------cEEEEEeCCH-HHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999865 4 8999999985 46788999999999999999
Q ss_pred ecCccchH
Q psy10236 262 SGKRRDML 269 (515)
Q Consensus 262 ~G~~~~~~ 269 (515)
.|+++++.
T Consensus 232 ~g~~~~~~ 239 (265)
T TIGR02769 232 ECDVAQLL 239 (265)
T ss_pred ECCHHHHc
Confidence 99987764
No 131
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-44 Score=355.33 Aligned_cols=219 Identities=19% Similarity=0.228 Sum_probs=186.7
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-----CCeeEEEECCeeCCh----
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND-----AKAFQVILNGHSIPL---- 107 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-----~~~G~I~~~G~~~~~---- 107 (515)
-|.|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~~--~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 4 PPKMEARGLSFFY--GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred CcEEEEeeeEEEE--CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 3579999999987 45679999999999999999999999999999999999864 589999999998742
Q ss_pred -hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc----cccCcccCCChHHHHH
Q psy10236 108 -NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ----VLSTRVGRLTTSELKR 182 (515)
Q Consensus 108 -~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSGGerqR 182 (515)
...++.++|++|+..+++ .||.||+.+....+... .....+++++++++.+|+.+ ..++.+++||||||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 157 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVK---DKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQR 157 (253)
T ss_pred HHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 234678999999988887 59999998865433211 12234567888999999843 4688899999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ + +|||+++|++ .++.++||++++|++|+++..
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~------~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-R------YTIIIVTHNM-QQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C------CeEEEEEecH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999954 4 7899999985 468899999999999999999
Q ss_pred cCccchH
Q psy10236 263 GKRRDML 269 (515)
Q Consensus 263 G~~~~~~ 269 (515)
|+++++.
T Consensus 230 g~~~~~~ 236 (253)
T PRK14242 230 GPTEQIF 236 (253)
T ss_pred CCHHHHH
Confidence 9877653
No 132
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=4.2e-44 Score=358.10 Aligned_cols=223 Identities=19% Similarity=0.236 Sum_probs=190.3
Q ss_pred cCeEEEEeeEEeCCC-------CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--
Q psy10236 37 FPHLQVRGLEVPPSS-------KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-- 107 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~-------~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-- 107 (515)
.++|+++||+++|.. +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 357999999998842 12469999999999999999999999999999999999999999999999998742
Q ss_pred -hhhccceEEEecCCC--CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHH
Q psy10236 108 -NALKRRLVYVRSQSF--LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRL 183 (515)
Q Consensus 108 -~~~~~~i~yv~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv 183 (515)
...++.++|++|++. +++.+|+.+++.+........ ......+++.++++.+||. +..++.+.+|||||||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv 158 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDL---EPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRL 158 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCC---CHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHH
Confidence 223467999999864 678889999998765433211 1223445788999999994 678889999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++ | +|||+++|++ .++..+||++++|++|+++..
T Consensus 159 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g------~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~ 231 (267)
T PRK15112 159 GLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQG------ISYIYVTQHL-GMMKHISDQVLVMHQGEVVER 231 (267)
T ss_pred HHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC------cEEEEEeCCH-HHHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999865 5 7999999986 478889999999999999999
Q ss_pred cCccchH
Q psy10236 263 GKRRDML 269 (515)
Q Consensus 263 G~~~~~~ 269 (515)
|+++++.
T Consensus 232 ~~~~~~~ 238 (267)
T PRK15112 232 GSTADVL 238 (267)
T ss_pred CCHHHHh
Confidence 8877653
No 133
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.4e-44 Score=357.69 Aligned_cols=222 Identities=18% Similarity=0.272 Sum_probs=189.6
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCC---eeEEEECCeeCCh-------
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAK---AFQVILNGHSIPL------- 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~---~G~I~~~G~~~~~------- 107 (515)
++|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 3 ~~l~~~nl~~~~--~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 3 TIIRVEKLAKTF--NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred cEEEEeeEEEEe--CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 579999999987 4577999999999999999999999999999999999999876 5999999988732
Q ss_pred -hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCC-C---CCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHH
Q psy10236 108 -NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPP-K---HSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKR 182 (515)
Q Consensus 108 -~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~-~---~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqR 182 (515)
...++.++|++|+..+++.+||.||+.+......+. . .......++++.++++.+||.+..++.+++||||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 160 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQR 160 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHH
Confidence 234567999999999999999999998753211000 0 00112334678899999999988999999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++. ++|||+++|++ .++.++||++++|++|++++.
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-----g~tvii~tH~~-~~~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND-----GITVVVTLHQV-DYALRYCERIVALRQGHVFYD 234 (262)
T ss_pred HHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhc-----CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999998642 28999999986 468899999999999999999
Q ss_pred cCccc
Q psy10236 263 GKRRD 267 (515)
Q Consensus 263 G~~~~ 267 (515)
|++++
T Consensus 235 g~~~~ 239 (262)
T PRK09984 235 GSSQQ 239 (262)
T ss_pred CCHHH
Confidence 98765
No 134
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.9e-44 Score=349.69 Aligned_cols=209 Identities=20% Similarity=0.288 Sum_probs=185.8
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEec
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRS 119 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q 119 (515)
|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ++.++|++|
T Consensus 1 l~l~~v~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~-~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRF--GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD-LHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEE--CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc-cccEEEEcC
Confidence 4789999987 3567999999999999999999999999999999999999999999999999875322 357999999
Q ss_pred CCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEe
Q psy10236 120 QSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLD 199 (515)
Q Consensus 120 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLD 199 (515)
++.+++.+|+.||+.+....+.. ...++.++++.+||.+..++.+.+||||||||++||||++.+|++|+||
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllD 149 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGL--------PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILD 149 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCC--------CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 99999999999999876543221 1245778999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCcc
Q psy10236 200 CPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRR 266 (515)
Q Consensus 200 EPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~ 266 (515)
|||+|||+.++..+.+.|++++++| ++||+++|++ +++.++|||+++|++|+++..|+++
T Consensus 150 EP~~~LD~~~~~~l~~~L~~~~~~~------~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 150 EPTNGLDPIGIQELRELIRSFPEQG------ITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHCC------CEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChh
Confidence 9999999999999999999997665 7999999986 4688999999999999999998865
No 135
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-44 Score=346.31 Aligned_cols=209 Identities=17% Similarity=0.264 Sum_probs=180.5
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEEe
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYVR 118 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~ 118 (515)
++++|++++|. ++. .|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++
T Consensus 1 i~~~~l~~~~~--~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 76 (211)
T cd03298 1 VRLDKIRFSYG--EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLF 76 (211)
T ss_pred CEEEeEEEEeC--CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEe
Confidence 46899999873 333 39999999999999999999999999999999999999999999998743 22356799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEE
Q psy10236 119 SQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlL 198 (515)
|+..+++.+|+.||+.+....... .....++++.++++.+||.+..++++.+||||||||++|||||+.+|+++||
T Consensus 77 q~~~~~~~~tv~enl~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llll 152 (211)
T cd03298 77 QENNLFAHLTVEQNVGLGLSPGLK----LTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLL 152 (211)
T ss_pred cccccCCCCcHHHHHhcccccccC----ccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999875432111 0123345788999999999889999999999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 199 DCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 199 DEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
||||+|||+.++..+.+.|++++++ + .|||+++|++ .++.++||++++|++|+++..|
T Consensus 153 DEP~~~LD~~~~~~l~~~l~~~~~~~~------~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 153 DEPFAALDPALRAEMLDLVLDLHAETK------MTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcC------CEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999764 4 7999999985 4688899999999999998654
No 136
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.8e-44 Score=353.10 Aligned_cols=220 Identities=17% Similarity=0.195 Sum_probs=185.3
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC--CCCeeEEEECCeeCCh---hh-hccc
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN--DAKAFQVILNGHSIPL---NA-LKRR 113 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~--~~~~G~I~~~G~~~~~---~~-~~~~ 113 (515)
|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++.. .. .+..
T Consensus 1 l~~~~l~~~~--~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSV--EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEE--CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 4789999987 4567999999999999999999999999999999999995 7899999999998742 12 2345
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCC---CCchhhHHHHHHHHHHHcCCc-ccccCccc-CCChHHHHHHHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPK---HSIKVTTSEQMGLLIEELGLT-QVLSTRVG-RLTTSELKRLSIACC 188 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~-~LSGGerqRv~IA~a 188 (515)
++|++|++.+++.+|+.|++.+......... ........+++.++++.+||. ...++++. +|||||||||+|||+
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~a 158 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQM 158 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHH
Confidence 8999999999999999999987643221100 001122345688999999997 56788887 599999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhh-ccEEEEEeCCeEEEecCccc
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTM-ISRVLLVSGGRTMYSGKRRD 267 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~-~Drv~vL~~G~iv~~G~~~~ 267 (515)
|+.+|++|||||||+|||+.++..+.+.|++++++| +|||+++|++ +++..+ ||++++|++|++++.|++++
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~------~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 159 ALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPD------RSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC------cEEEEEEecH-HHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 999999999999999999999999999999997765 7999999986 467777 89999999999999998874
Q ss_pred h
Q psy10236 268 M 268 (515)
Q Consensus 268 ~ 268 (515)
+
T Consensus 232 ~ 232 (243)
T TIGR01978 232 A 232 (243)
T ss_pred h
Confidence 4
No 137
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-44 Score=360.27 Aligned_cols=220 Identities=15% Similarity=0.195 Sum_probs=190.1
Q ss_pred CeEEEEeeEEeCCCC----CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hh
Q psy10236 38 PHLQVRGLEVPPSSK----NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NA 109 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~----~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~ 109 (515)
++++++|++++|+.. ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 579999999998532 3569999999999999999999999999999999999999999999999998742 23
Q ss_pred hccceEEEecCCC-CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHH
Q psy10236 110 LKRRLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACC 188 (515)
Q Consensus 110 ~~~~i~yv~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~a 188 (515)
.++.++|++|++. .+...||.+|+.+....... ...+.+++++++++.+||.+..++++++|||||||||+||++
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGI----PPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCC----CHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 5678999999863 23346999999886543221 123445678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccc
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRD 267 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~ 267 (515)
|+.+|+++||||||+|||+.++..+.+.|++++++ | .|||+++|++. ++.. ||++++|++|+++..|++++
T Consensus 159 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g------~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~ 230 (280)
T PRK13633 159 LAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYG------ITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKE 230 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC------CEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999764 5 89999999864 5554 99999999999999999887
Q ss_pred hH
Q psy10236 268 ML 269 (515)
Q Consensus 268 ~~ 269 (515)
+.
T Consensus 231 ~~ 232 (280)
T PRK13633 231 IF 232 (280)
T ss_pred Hh
Confidence 65
No 138
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=6.8e-44 Score=366.24 Aligned_cols=224 Identities=21% Similarity=0.259 Sum_probs=191.3
Q ss_pred cCeEEEEeeEEeCCC--CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCC---eeEEEECCeeCCh---h
Q psy10236 37 FPHLQVRGLEVPPSS--KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAK---AFQVILNGHSIPL---N 108 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~--~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~---~G~I~~~G~~~~~---~ 108 (515)
.++|+++||++.|.. +...+|+||||+|++||++||+|+||||||||+++|+|+++|. +|+|.++|+++.. .
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 357999999998742 2356999999999999999999999999999999999999985 9999999998742 2
Q ss_pred h---hc-cceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc---cccCcccCCChHH
Q psy10236 109 A---LK-RRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ---VLSTRVGRLTTSE 179 (515)
Q Consensus 109 ~---~~-~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSGGe 179 (515)
. ++ +.++||+|++ .+.|.+|+.+++.......... ...+..+++.++++.+||.+ ..++.+++|||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~---~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~ 166 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGM---SKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGM 166 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHH
Confidence 2 22 4799999997 6889999999997765433211 23344567889999999974 3578999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 180 LKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 180 rqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
||||+||+||+.+|+|||+||||+|||+.++.+++++|++++++. +.|+|+++|+. ..+.++|||+++|++|++
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-----g~til~iTHdl-~~~~~~~Dri~vm~~G~i 240 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREF-----NTAIIMITHDL-GVVAGICDKVLVMYAGRT 240 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHc-----CCEEEEEECCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999998752 38999999985 467889999999999999
Q ss_pred EEecCccchH
Q psy10236 260 MYSGKRRDML 269 (515)
Q Consensus 260 v~~G~~~~~~ 269 (515)
++.|+++++.
T Consensus 241 ve~g~~~~i~ 250 (330)
T PRK09473 241 MEYGNARDVF 250 (330)
T ss_pred EEECCHHHHH
Confidence 9999988875
No 139
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-44 Score=359.82 Aligned_cols=221 Identities=14% Similarity=0.196 Sum_probs=191.5
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCe---eEEEECCeeCCh---hhh
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKA---FQVILNGHSIPL---NAL 110 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~---G~I~~~G~~~~~---~~~ 110 (515)
.++|+++|+++.|....+.+++|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.. ...
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 45799999999884333569999999999999999999999999999999999999987 999999998743 245
Q ss_pred ccceEEEecCCC-CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHH
Q psy10236 111 KRRLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCL 189 (515)
Q Consensus 111 ~~~i~yv~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL 189 (515)
++.++|++|++. .++..||.||+.+....... ...+.++++.++++.+||.+..++++.+||||||||++||+||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral 158 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAV----PRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGIL 158 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCC----CHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 678999999974 67789999999876433221 1234456788999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 190 MSHADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 190 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
+.+|++|||||||+|||+.++..+.+.|++++++ | +|||+++|+.. ++ ..||++++|++|++++.|+++++
T Consensus 159 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g------~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 159 AVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNN------LTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC------CEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999865 5 79999999864 45 57999999999999999998876
Q ss_pred H
Q psy10236 269 L 269 (515)
Q Consensus 269 ~ 269 (515)
.
T Consensus 231 ~ 231 (282)
T PRK13640 231 F 231 (282)
T ss_pred h
Confidence 4
No 140
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-44 Score=354.21 Aligned_cols=222 Identities=16% Similarity=0.193 Sum_probs=189.2
Q ss_pred CCCcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-----CCeeEEEECCeeCCh-
Q psy10236 34 PEFFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND-----AKAFQVILNGHSIPL- 107 (515)
Q Consensus 34 ~~~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-----~~~G~I~~~G~~~~~- 107 (515)
|....+++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 8 ~~~~~~l~~~~l~~~~--~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~ 85 (260)
T PRK10744 8 ATAPSKIQVRNLNFYY--GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTP 85 (260)
T ss_pred cCCCceEEEEEEEEEe--CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccc
Confidence 4455689999999987 35679999999999999999999999999999999999986 479999999998732
Q ss_pred ----hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHH
Q psy10236 108 ----NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSE 179 (515)
Q Consensus 108 ----~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGe 179 (515)
...++.++|++|+..+++ .|+.||+.+........ ......++++++++.+|+. +..++.+.+|||||
T Consensus 86 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 86 KQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKL---SRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQ 161 (260)
T ss_pred ccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCC---CHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHH
Confidence 235678999999988887 89999998765432111 1233446788899999984 45788999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 180 LKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 180 rqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ + +|||+++|++ .++.++||++++|++|++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~------~tiii~sH~~-~~~~~~~d~i~~l~~G~i 233 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-D------YTVVIVTHNM-QQAARCSDYTAFMYLGEL 233 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C------CeEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999953 4 6899999985 467889999999999999
Q ss_pred EEecCccchH
Q psy10236 260 MYSGKRRDML 269 (515)
Q Consensus 260 v~~G~~~~~~ 269 (515)
+..|+++++.
T Consensus 234 ~~~g~~~~~~ 243 (260)
T PRK10744 234 IEFGNTDTIF 243 (260)
T ss_pred EEeCCHHHHH
Confidence 9999887654
No 141
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=7.1e-44 Score=370.64 Aligned_cols=208 Identities=21% Similarity=0.279 Sum_probs=183.7
Q ss_pred CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCe----eCC---hhh---h-ccceEEEecC
Q psy10236 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGH----SIP---LNA---L-KRRLVYVRSQ 120 (515)
Q Consensus 52 ~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~----~~~---~~~---~-~~~i~yv~q~ 120 (515)
+...+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+ ++. ... . ++.++|++|+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~ 114 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK 114 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECC
Confidence 5667899999999999999999999999999999999999999999999996 332 111 2 3579999999
Q ss_pred CCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeC
Q psy10236 121 SFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDC 200 (515)
Q Consensus 121 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDE 200 (515)
..++|.+||.||+.+....... .+.+.++++.++++.+||.+..++++++|||||||||+|||||+.+|+||||||
T Consensus 115 ~~l~p~~Tv~eNi~~~~~~~g~----~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDE 190 (382)
T TIGR03415 115 FALMPWLTVEENVAFGLEMQGM----PEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDE 190 (382)
T ss_pred CcCCCCCcHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999999987654321 123455678899999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 201 PTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 201 PtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
||+|||+.++.++.+.|++++++. ++|||+++|+. +++.++|||+++|++|+++..|+++++.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~-----~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 191 PFSALDPLIRTQLQDELLELQAKL-----NKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhc-----CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999998752 38999999985 5789999999999999999999998775
No 142
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-44 Score=349.25 Aligned_cols=216 Identities=19% Similarity=0.281 Sum_probs=186.8
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChh-hhccceEEE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLN-ALKRRLVYV 117 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~-~~~~~i~yv 117 (515)
+++++|++++|. ++ ..|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ..++.++|+
T Consensus 1 ~l~~~~l~~~~~--~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 1 MLKLTDITWLYH--HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred CeEEEEEEEEEC--Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 478999999873 33 2499999999999999999999999999999999999999999999987431 234679999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|++.+++.+|+.||+.+...... . ......+++.++++.+||.+..++++.+||||||||++||+|++.+|+++|
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~-~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 152 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGL-K---LNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILL 152 (232)
T ss_pred ecccccccCCcHHHHHhccccccc-C---CCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999986532111 0 112345678899999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
|||||+|||+.++..+.+.|++++++ | +|+|+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 153 LDEP~~gLD~~~~~~~~~~l~~~~~~~~------~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 153 LDEPFSALDPALRQEMLTLVSQVCQERQ------LTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcC------CEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999764 4 7999999986 4678899999999999999999877654
No 143
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-44 Score=351.55 Aligned_cols=213 Identities=18% Similarity=0.252 Sum_probs=186.6
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~ 115 (515)
+|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ...++.++
T Consensus 3 ~l~~~~l~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSS--FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEe--CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 58999999987 45679999999999999999999999999999999999999999999999998732 34567899
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
|++|++.+++ .|+.||+.+....+. ...+++.++++.+||. +..++.+.+||||||||++|||||+.+|+
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 151 (241)
T PRK14250 81 MVFQQPHLFE-GTVKDNIEYGPMLKG--------EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPE 151 (241)
T ss_pred EEecCchhch-hhHHHHHhcchhhcC--------cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999988886 699999876532211 1234677899999996 67899999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+|||||||+|||+.++..+.+.|++++++ | +|||+++|+. .++.++||++++|++|+++..|+++++.
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g------~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 152 VLLLDEPTSALDPTSTEIIEELIVKLKNKMN------LTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCC------CEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999999764 5 7999999985 4688899999999999999999887653
No 144
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-44 Score=370.22 Aligned_cols=210 Identities=21% Similarity=0.337 Sum_probs=186.3
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-------hhhc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-------NALK 111 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-------~~~~ 111 (515)
||++ ||+++| +++. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...+
T Consensus 1 ~l~~-~l~k~~--~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 1 MLEL-NFKQQL--GDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred CeEE-EEEEEe--CCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 4778 999887 3443 3 8999999999999999999999999999999999999999999988632 2346
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHh
Q psy10236 112 RRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMS 191 (515)
Q Consensus 112 ~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~ 191 (515)
+.++|++|+..++|.+||+||+.+... ...+++++++++.+||.+..++++++|||||||||+|||||+.
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~----------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMA----------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhh----------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999987532 1123568889999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+|++|||||||+|||+.++..+.+.|++++++. ++|+|+++|++ .++..+||++++|++|+++..|+++++.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~-----g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREI-----NIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-----CCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 999999999999999999999999999998752 27999999985 5789999999999999999999998875
No 145
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-43 Score=359.22 Aligned_cols=222 Identities=14% Similarity=0.165 Sum_probs=187.3
Q ss_pred CeEEEEeeEEeCCCCC---cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC--------
Q psy10236 38 PHLQVRGLEVPPSSKN---KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP-------- 106 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~---~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~-------- 106 (515)
..|+++|++++|.... ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999884221 25999999999999999999999999999999999999999999999998863
Q ss_pred hhhhccceEEEecCCC-CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHH
Q psy10236 107 LNALKRRLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLS 184 (515)
Q Consensus 107 ~~~~~~~i~yv~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~ 184 (515)
...+++.++|++|++. .....|+.||+.+....... ......+++.++++.++|. +..++++++|||||||||+
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~----~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~ 160 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGE----NKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVA 160 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHH
Confidence 1235678999999863 22246999999876532211 1233445678899999994 6889999999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||||+.+|++|||||||+|||+.++..+.+.|++++++. ++|||+++|++ .++.++||++++|++|++++.|+
T Consensus 161 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~-----~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 161 LAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY-----KKRIIMVTHNM-DQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-----CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999997642 27999999985 46889999999999999999998
Q ss_pred ccchH
Q psy10236 265 RRDML 269 (515)
Q Consensus 265 ~~~~~ 269 (515)
++++.
T Consensus 235 ~~~~~ 239 (289)
T PRK13645 235 PFEIF 239 (289)
T ss_pred HHHHh
Confidence 87654
No 146
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-44 Score=357.25 Aligned_cols=221 Identities=19% Similarity=0.246 Sum_probs=188.2
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCC--------eeEEEECCeeCCh---
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAK--------AFQVILNGHSIPL--- 107 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~--------~G~I~~~G~~~~~--- 107 (515)
||+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 1 ml~~~nl~~~~--~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 1 MLTADHLHVAR--RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred CeEEEEEEEEE--CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 48999999987 4567999999999999999999999999999999999999998 9999999998732
Q ss_pred hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHH
Q psy10236 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIAC 187 (515)
Q Consensus 108 ~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~ 187 (515)
...++.++|++|++..++.+|+.||+.+..............+..+++.++++.+||.+..++.+.+|||||||||+|||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 158 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFAR 158 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 34556789999998766679999999875321110000011233456788999999998899999999999999999999
Q ss_pred HHH---------hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCC
Q psy10236 188 CLM---------SHADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGG 257 (515)
Q Consensus 188 aL~---------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G 257 (515)
+|+ .+|++|||||||+|||+.++..+.+.|++++++ | +|||+++|++ .++.++||++++|++|
T Consensus 159 al~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~------~tviiisH~~-~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 159 VLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN------LGVLAIVHDP-NLAARHADRIAMLADG 231 (272)
T ss_pred HHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC------CEEEEEECCH-HHHHHhCCEEEEEECC
Confidence 999 599999999999999999999999999999875 5 7999999985 4688899999999999
Q ss_pred eEEEecCccch
Q psy10236 258 RTMYSGKRRDM 268 (515)
Q Consensus 258 ~iv~~G~~~~~ 268 (515)
++++.|+++++
T Consensus 232 ~i~~~g~~~~~ 242 (272)
T PRK13547 232 AIVAHGAPADV 242 (272)
T ss_pred eEEEecCHHHH
Confidence 99999987765
No 147
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=352.72 Aligned_cols=219 Identities=16% Similarity=0.222 Sum_probs=188.2
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-----CeeEEEECCeeCC-----h
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-----KAFQVILNGHSIP-----L 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-----~~G~I~~~G~~~~-----~ 107 (515)
++++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++. .
T Consensus 3 ~~l~i~~v~~~~--~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 3 KRIDVKDLNIYY--GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred ccEEEeeEEEEE--CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 369999999987 356799999999999999999999999999999999999874 6999999998873 1
Q ss_pred hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHHH
Q psy10236 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKRL 183 (515)
Q Consensus 108 ~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqRv 183 (515)
...++.++|++|+..+++.+||.||+.+....+... .....+++++++++.+|+. +..++.+.+|||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 157 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVR---NKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRL 157 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH
Confidence 245678999999999999999999998765432210 1233455678899999984 567889999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe------CC
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS------GG 257 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~------~G 257 (515)
+|||||+.+|+++||||||+|||+.++..+.+.|+++++ + +|||+++|++ .++.++||++++|+ +|
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~------~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g 229 (258)
T PRK14241 158 CIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-D------YTIVIVTHNM-QQAARVSDQTAFFNLEATGKPG 229 (258)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C------CEEEEEecCH-HHHHHhCCEEEEEecccCCCCc
Confidence 999999999999999999999999999999999999964 4 6899999985 46889999999997 79
Q ss_pred eEEEecCccchH
Q psy10236 258 RTMYSGKRRDML 269 (515)
Q Consensus 258 ~iv~~G~~~~~~ 269 (515)
++++.|+++++.
T Consensus 230 ~i~~~~~~~~~~ 241 (258)
T PRK14241 230 RLVEIDDTEKIF 241 (258)
T ss_pred eEEecCCHHHHH
Confidence 999999887764
No 148
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=7.1e-44 Score=386.63 Aligned_cols=223 Identities=17% Similarity=0.236 Sum_probs=193.5
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---h-hhccc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---N-ALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~-~~~~~ 113 (515)
++++++|++++| +++.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. . ..++.
T Consensus 3 ~~i~~~~l~~~~--~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 3 ALLQLKGIDKAF--PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred ceEEEeeeEEEe--CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 579999999987 45679999999999999999999999999999999999999999999999998742 1 23567
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
++|++|++.+++.+||.||+.++...+...........++++.++++.+||.+..++++++|||||||||+||+||+.+|
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFES 160 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999886432211000112234466889999999999899999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
++|||||||+|||+.++..+.+.|++++++| +|||+++|++ .++.++||++++|++|+++..|+++++.
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~------~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 161 KVIIMDEPTDALTDTETESLFRVIRELKSQG------RGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHHCC------CEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999999997665 7999999985 5788999999999999999999987653
No 149
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=350.83 Aligned_cols=219 Identities=15% Similarity=0.196 Sum_probs=188.4
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-----CeeEEEECCeeCCh----
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-----KAFQVILNGHSIPL---- 107 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-----~~G~I~~~G~~~~~---- 107 (515)
.|+++++|+++.| +++.+|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 2 ~~~l~~~~l~~~~--~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (251)
T PRK14270 2 KIKMESKNLNLWY--GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79 (251)
T ss_pred ccEEEEEEeEEEE--CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccccc
Confidence 4789999999987 356799999999999999999999999999999999999875 79999999998742
Q ss_pred -hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHH
Q psy10236 108 -NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKR 182 (515)
Q Consensus 108 -~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqR 182 (515)
...++.++|++|++.+++ +|+.||+.+........ ......+++.++++.+|+. +..++.+++||||||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 155 (251)
T PRK14270 80 VVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIK---DKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQR 155 (251)
T ss_pred HHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCC---cHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence 234678999999998887 89999998765433211 1223445678899999874 45788999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ + +|||+++|++ .++.++|||+++|++|++++.
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~------~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~ 227 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-E------YTIVIVTHNM-QQASRVSDYTAFFLMGDLIEF 227 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C------CeEEEEEcCH-HHHHHhcCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999875 3 6889999985 478899999999999999999
Q ss_pred cCccchH
Q psy10236 263 GKRRDML 269 (515)
Q Consensus 263 G~~~~~~ 269 (515)
|+++++.
T Consensus 228 ~~~~~~~ 234 (251)
T PRK14270 228 NKTEKIF 234 (251)
T ss_pred CCHHHHh
Confidence 9988764
No 150
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=364.63 Aligned_cols=226 Identities=15% Similarity=0.169 Sum_probs=188.2
Q ss_pred CeEEEEeeEEeCCC--CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC----CCeeEEEECCeeCCh---h
Q psy10236 38 PHLQVRGLEVPPSS--KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND----AKAFQVILNGHSIPL---N 108 (515)
Q Consensus 38 ~~L~v~~l~~~~~~--~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~----~~~G~I~~~G~~~~~---~ 108 (515)
++|+++||+++|.. +...+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 47999999998742 23569999999999999999999999999999999999986 589999999998742 1
Q ss_pred h----hccceEEEecCCC--CCCCCCHHHHHHHHhhcCCCCC--CCchhhHHHHHHHHHHHcCCcc---cccCcccCCCh
Q psy10236 109 A----LKRRLVYVRSQSF--LSPELNVAQTLTFYSHLRRPPK--HSIKVTTSEQMGLLIEELGLTQ---VLSTRVGRLTT 177 (515)
Q Consensus 109 ~----~~~~i~yv~q~~~--~~~~lTv~e~l~~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSG 177 (515)
. .++.++||+|++. +.|.+||.+++........... .....+.++++.++++.+||.+ ..++.+.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 1 2357999999875 6788999999976432111000 0011234567889999999974 46899999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCC
Q psy10236 178 SELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGG 257 (515)
Q Consensus 178 GerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G 257 (515)
||||||+||+||+.+|+|||+||||+|||+.++.+++++|++++++. +.|||+++|+. ..+.++||||++|++|
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-----g~tii~itHdl-~~v~~~~dri~vm~~G 235 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN-----NTTILLISHDL-QMLSQWADKINVLYCG 235 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-----CCEEEEEECCH-HHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999998752 38999999985 5788999999999999
Q ss_pred eEEEecCccchH
Q psy10236 258 RTMYSGKRRDML 269 (515)
Q Consensus 258 ~iv~~G~~~~~~ 269 (515)
++++.|+++++.
T Consensus 236 ~ive~g~~~~i~ 247 (330)
T PRK15093 236 QTVETAPSKELV 247 (330)
T ss_pred EEEEECCHHHHH
Confidence 999999987764
No 151
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-44 Score=352.49 Aligned_cols=204 Identities=19% Similarity=0.241 Sum_probs=189.4
Q ss_pred eeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---h----hhccceEEEecCCCCCCCCC
Q psy10236 56 FVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---N----ALKRRLVYVRSQSFLSPELN 128 (515)
Q Consensus 56 iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~----~~~~~i~yv~q~~~~~~~lT 128 (515)
-++|+||+++.|||..|||-||||||||+++|.++..|++|+|.++|+++.. . -.++++++|+|+..++|+.|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 4899999999999999999999999999999999999999999999998832 2 24577999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChh
Q psy10236 129 VAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIF 208 (515)
Q Consensus 129 v~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~ 208 (515)
|.||..|+.++++.+ +.+.++++.++++.+||..+.+++|++|||||||||.|||||+.+|+||++|||+|+|||-
T Consensus 123 Vl~Nv~fGLev~Gv~----~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPL 198 (386)
T COG4175 123 VLENVAFGLEVQGVP----KAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPL 198 (386)
T ss_pred HhhhhhcceeecCCC----HHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChH
Confidence 999999999887643 4677889999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 209 DTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 209 ~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
-+.++-+.|.+|.++- ++|||+++|+ .+|++++-|||.+|++|++|..|+|++++
T Consensus 199 IR~~mQdeLl~Lq~~l-----~KTIvFitHD-LdEAlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 199 IRTEMQDELLELQAKL-----KKTIVFITHD-LDEALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred HHHHHHHHHHHHHHHh-----CCeEEEEecC-HHHHHhccceEEEecCCeEEEeCCHHHHH
Confidence 9999999999998763 4899999998 57999999999999999999999999987
No 152
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=351.11 Aligned_cols=218 Identities=13% Similarity=0.169 Sum_probs=186.2
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCC---CCC--CeeEEEECCeeCCh-----
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR---NDA--KAFQVILNGHSIPL----- 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~---~~~--~~G~I~~~G~~~~~----- 107 (515)
++|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+ .+| ++|+|.++|+++..
T Consensus 2 ~~l~~~~~~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 2 VKIDARDVNFWY--GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred cEEEEEEEEEEE--CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 579999999987 456799999999999999999999999999999999997 354 58999999998742
Q ss_pred hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc----cccCcccCCChHHHHHH
Q psy10236 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ----VLSTRVGRLTTSELKRL 183 (515)
Q Consensus 108 ~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSGGerqRv 183 (515)
...++.++|++|++.+++ .|+.||+.+....+... ......++++++++.+||.+ ..++++.+||||||||+
T Consensus 80 ~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVK---DNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRL 155 (250)
T ss_pred HHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHH
Confidence 245678999999988887 59999998765433211 11234456788999999853 56888999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ + +|||+++|++ .++.++|||+++|++|++++.|
T Consensus 156 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~------~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~~ 227 (250)
T PRK14245 156 CIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK-D------YTIVIVTHNM-QQAARVSDKTAFFYMGEMVEYD 227 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C------CeEEEEeCCH-HHHHhhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999953 4 7899999985 4688999999999999999999
Q ss_pred CccchH
Q psy10236 264 KRRDML 269 (515)
Q Consensus 264 ~~~~~~ 269 (515)
+++++.
T Consensus 228 ~~~~~~ 233 (250)
T PRK14245 228 DTKKIF 233 (250)
T ss_pred CHHHHh
Confidence 988764
No 153
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-43 Score=353.14 Aligned_cols=222 Identities=17% Similarity=0.206 Sum_probs=188.9
Q ss_pred CCcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-----CeeEEEECCeeCCh--
Q psy10236 35 EFFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-----KAFQVILNGHSIPL-- 107 (515)
Q Consensus 35 ~~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-----~~G~I~~~G~~~~~-- 107 (515)
...+.|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 15 ~~~~~l~~~nl~~~~--~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 15 ATEIKMRARDVSVFY--GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCCceEEEEeEEEEE--CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 345689999999987 456799999999999999999999999999999999999874 89999999998742
Q ss_pred ---hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc----cccCcccCCChHHH
Q psy10236 108 ---NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ----VLSTRVGRLTTSEL 180 (515)
Q Consensus 108 ---~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSGGer 180 (515)
..+++.++|++|++.+++. ||.||+.+....+... .......+++.++++.+||.+ ..++.+++||||||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 169 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLA--RSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQ 169 (267)
T ss_pred cchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 2356789999999888875 9999998865433211 012233466788999999953 46788999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEE
Q psy10236 181 KRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTM 260 (515)
Q Consensus 181 qRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv 260 (515)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ + +|||+++|++ .++..+||++++|++|+++
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~------~tiiivtH~~-~~~~~~~d~v~~l~~G~i~ 241 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-N------YTIVIVTHSM-QQAARVSQRTAFFHLGNLV 241 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-C------CeEEEEEcCH-HHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999964 4 6899999985 4788999999999999999
Q ss_pred EecCccchH
Q psy10236 261 YSGKRRDML 269 (515)
Q Consensus 261 ~~G~~~~~~ 269 (515)
..|+++++.
T Consensus 242 ~~g~~~~~~ 250 (267)
T PRK14235 242 EVGDTEKMF 250 (267)
T ss_pred EeCCHHHHH
Confidence 999887653
No 154
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-43 Score=351.93 Aligned_cols=219 Identities=16% Similarity=0.200 Sum_probs=187.1
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC--C---CeeEEEECCeeCCh----
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND--A---KAFQVILNGHSIPL---- 107 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~--~---~~G~I~~~G~~~~~---- 107 (515)
.++|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++..
T Consensus 10 ~~~l~i~~l~~~~--~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 10 QEVYQINGMNLWY--GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred CceEEEeeEEEEE--CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 4589999999987 45679999999999999999999999999999999999987 3 58999999998741
Q ss_pred -hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHH
Q psy10236 108 -NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKR 182 (515)
Q Consensus 108 -~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqR 182 (515)
...++.++|++|+..+++. |+.||+.+........ ...+..++++++++.+|+. +..++.+++||||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qr 163 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTK---NKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQR 163 (259)
T ss_pred HHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCC---CHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 2456789999999888875 9999998765432211 1223445678889999985 35688999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ + +|+|+++|++ .++.++|||+++|++|+++..
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~------~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~ 235 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-K------YTIVIVTHNM-QQAARVSDQTAFFYMGELVEC 235 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-C------CEEEEEEcCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999964 4 7899999985 478899999999999999999
Q ss_pred cCccchH
Q psy10236 263 GKRRDML 269 (515)
Q Consensus 263 G~~~~~~ 269 (515)
|+++++.
T Consensus 236 g~~~~~~ 242 (259)
T PRK14274 236 NDTNKMF 242 (259)
T ss_pred CCHHHHh
Confidence 9988764
No 155
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.7e-43 Score=342.01 Aligned_cols=211 Identities=18% Similarity=0.245 Sum_probs=182.9
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEEe
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYVR 118 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~ 118 (515)
++++|+++.|. + +++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++
T Consensus 1 ~~~~~l~~~~~--~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (213)
T TIGR01277 1 LALDKVRYEYE--H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLF 76 (213)
T ss_pred CeEEeeeEEeC--C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEe
Confidence 47899999873 2 4789999999999999999999999999999999999999999999998743 23567799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEE
Q psy10236 119 SQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlL 198 (515)
|++.+++.+|+.||+.+....... .....+++++++++.+||.+..++.+.+||||||||++|||+|+.+|++++|
T Consensus 77 q~~~~~~~~t~~en~~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 152 (213)
T TIGR01277 77 QENNLFAHLTVRQNIGLGLHPGLK----LNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLL 152 (213)
T ss_pred ccCccCCCCcHHHHHHhHhhccCC----ccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999865322111 0122345678899999999889999999999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 199 DCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 199 DEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
||||+|||+.++..+.+.|++++++. ++|||+++|++ .++.++||++++|++|+++..|+
T Consensus 153 DEPt~~LD~~~~~~~~~~l~~~~~~~-----~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 153 DEPFSALDPLLREEMLALVKQLCSER-----QRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhc-----CCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999997652 27999999985 46788999999999999998875
No 156
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-43 Score=346.56 Aligned_cols=217 Identities=20% Similarity=0.299 Sum_probs=190.6
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEEe
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYVR 118 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~ 118 (515)
|+++|+++++ +++.+++|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|+++.. ...++.++|++
T Consensus 1 l~~~~l~~~~--~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 78 (232)
T cd03300 1 IELENVSKFY--GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVF 78 (232)
T ss_pred CEEEeEEEEe--CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEe
Confidence 4689999987 45679999999999999999999999999999999999999999999999998743 22356899999
Q ss_pred cCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEE
Q psy10236 119 SQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlL 198 (515)
|+..+++.+|+.||+.+....+... .....++++++++.+|+.+..++.+.+||||||||++|||+|+.+|+++||
T Consensus 79 q~~~~~~~~t~~~nl~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llll 154 (232)
T cd03300 79 QNYALFPHLTVFENIAFGLRLKKLP----KAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLL 154 (232)
T ss_pred cccccCCCCcHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999998765443211 233455778899999999999999999999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 199 DCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 199 DEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
||||+|||+.++..+.+.|++++++ | +|||+++|++ .++.++||++++|++|++++.|+.+++.
T Consensus 155 DEP~~gLD~~~~~~l~~~l~~~~~~~~------~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 155 DEPLGALDLKLRKDMQLELKRLQKELG------ITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcC------CEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999999865 5 8999999985 4688999999999999999998876553
No 157
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.1e-43 Score=368.36 Aligned_cols=210 Identities=23% Similarity=0.340 Sum_probs=184.7
Q ss_pred eeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-------hhhccceEE
Q psy10236 44 GLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-------NALKRRLVY 116 (515)
Q Consensus 44 ~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-------~~~~~~i~y 116 (515)
||+++| +++. + |+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 4 ~l~~~~--~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRL--GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEE--CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 788877 4444 4 9999999999999999999999999999999999999999999998732 134678999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
++|++.+++.+||.||+.+...... ..+.+++++++++.+||.+..++++.+|||||||||+|||||+.+|++|
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~------~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ll 153 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRAR------PSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLL 153 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccC------hhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999988653211 1233456889999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
||||||+|||+.++..+.+.|++++++. ++|+|+++|++ +++..+||++++|++|+++..|+++++.
T Consensus 154 lLDEPts~LD~~~~~~l~~~L~~l~~~~-----g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 154 LMDEPLAALDDPRKYEILPYLERLHAEF-----GIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHhc-----CCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 9999999999999999999999998752 27899999985 4788999999999999999999988765
No 158
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-43 Score=346.47 Aligned_cols=216 Identities=24% Similarity=0.330 Sum_probs=188.9
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEEe
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYVR 118 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~ 118 (515)
|+++|+++.|. ++ +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++|++
T Consensus 1 l~~~~l~~~~~--~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~ 77 (235)
T cd03299 1 LKVENLSKDWK--EF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVP 77 (235)
T ss_pred CeeEeEEEEeC--Cc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEe
Confidence 46899999873 33 8999999999999999999999999999999999999999999999998743 22356899999
Q ss_pred cCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEE
Q psy10236 119 SQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlL 198 (515)
|+..+++.+|+.||+.+....... ......+++.++++.+||.+..++++.+|||||||||+|||||+.+|++++|
T Consensus 78 q~~~~~~~~t~~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 153 (235)
T cd03299 78 QNYALFPHMTVYKNIAYGLKKRKV----DKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLL 153 (235)
T ss_pred ecCccCCCccHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999876433211 1233445678899999999999999999999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 199 DCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 199 DEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
||||+|||+.++..+.+.|++++.+ + +|+|+++|++ .++.++||++++|++|+++..|+++++.
T Consensus 154 DEPt~gLD~~~~~~l~~~l~~~~~~~~------~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 154 DEPFSALDVRTKEKLREELKKIRKEFG------VTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHhcC------CEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999764 5 7999999986 4688899999999999999999876653
No 159
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.5e-43 Score=348.11 Aligned_cols=218 Identities=19% Similarity=0.253 Sum_probs=190.9
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEEe
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYVR 118 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~ 118 (515)
++++|++++| +++.+|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++|++
T Consensus 1 i~i~~l~~~~--~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~ 78 (237)
T TIGR00968 1 IEIANISKRF--GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVF 78 (237)
T ss_pred CEEEEEEEEE--CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEe
Confidence 4789999987 45679999999999999999999999999999999999999999999999998743 23456799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEE
Q psy10236 119 SQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlL 198 (515)
|++.+++.+|+.||+.+....+.. ......+.++++++.+++.+..++.+++|||||+||++||++|+.+|++++|
T Consensus 79 q~~~~~~~~t~~enl~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llll 154 (237)
T TIGR00968 79 QHYALFKHLTVRDNIAFGLEIRKH----PKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLL 154 (237)
T ss_pred cChhhccCCcHHHHHHhHHHhcCC----CHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999876543321 1223345678899999999889999999999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 199 DCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 199 DEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
||||+|||+.++..+.+.|++++++. ++|||+++|++ .++.++||++++|++|++++.|+.+++.
T Consensus 155 DEP~~~LD~~~~~~~~~~l~~~~~~~-----~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 155 DEPFGALDAKVRKELRSWLRKLHDEV-----HVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhc-----CCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999997752 28999999986 4688999999999999999999987664
No 160
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.4e-43 Score=348.16 Aligned_cols=203 Identities=24% Similarity=0.350 Sum_probs=176.2
Q ss_pred CCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccceEEEe-cCCCCCCCC
Q psy10236 51 SKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRLVYVR-SQSFLSPEL 127 (515)
Q Consensus 51 ~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~-q~~~~~~~l 127 (515)
++++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ...++.++|++ |.+.+++.+
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 110 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL 110 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCC
Confidence 356779999999999999999999999999999999999999999999999987532 23567899997 556778899
Q ss_pred CHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCh
Q psy10236 128 NVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207 (515)
Q Consensus 128 Tv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~ 207 (515)
|+.||+.+....+... ..+..++++++++.+|+.+..++++.+||||||||++||++|+.+|++|||||||+|||+
T Consensus 111 tv~e~l~~~~~~~~~~----~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 186 (236)
T cd03267 111 PVIDSFYLLAAIYDLP----PARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186 (236)
T ss_pred cHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 9999998865443211 233445678899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 208 FDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 208 ~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
.++..+.+.|+++++++ ++|||+++|++ .++.++||++++|++|++++.|
T Consensus 187 ~~~~~l~~~l~~~~~~~-----~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 187 VAQENIRNFLKEYNRER-----GTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHhcC-----CCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999997652 37999999986 4688999999999999998765
No 161
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-43 Score=352.28 Aligned_cols=219 Identities=18% Similarity=0.204 Sum_probs=186.0
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-----CCeeEEEECCeeCCh----
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND-----AKAFQVILNGHSIPL---- 107 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-----~~~G~I~~~G~~~~~---- 107 (515)
.++++++|++++| +++.+|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 19 ~~~l~~~~l~~~~--~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 19 EHILEVKDLSIYY--GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred CceEEEEEEEEEe--CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 3579999999987 45679999999999999999999999999999999999864 689999999998742
Q ss_pred -hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHH
Q psy10236 108 -NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKR 182 (515)
Q Consensus 108 -~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqR 182 (515)
...++.++|++|++.+++. |+.||+.+........ .....++.+.+.++.+++. +..++++++||||||||
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGER---RKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQR 172 (268)
T ss_pred HHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHH
Confidence 2356789999999888875 9999998764322110 1122345577788888884 45688999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ + +|||+++|++ .++.++|||+++|++|++++.
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~------~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-E------YSIIIVTHNM-QQALRVSDRTAFFLNGDLVEY 244 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-C------CEEEEEEeCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999964 4 6899999985 468899999999999999999
Q ss_pred cCccchH
Q psy10236 263 GKRRDML 269 (515)
Q Consensus 263 G~~~~~~ 269 (515)
|+++++.
T Consensus 245 ~~~~~~~ 251 (268)
T PRK14248 245 DQTEQIF 251 (268)
T ss_pred CCHHHHH
Confidence 9887653
No 162
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-43 Score=348.43 Aligned_cols=218 Identities=16% Similarity=0.220 Sum_probs=186.9
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC--C---CeeEEEECCeeCCh-----h
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND--A---KAFQVILNGHSIPL-----N 108 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~--~---~~G~I~~~G~~~~~-----~ 108 (515)
.++++|++++| +++.+|+|+||+|++||+++|+|+||||||||+++|+|+.+ | ++|+|.++|+++.. .
T Consensus 4 ~l~~~nl~~~~--~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 4 KVKLEQLNVHF--GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred EEEEEEEEEEe--CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 58999999987 35679999999999999999999999999999999999986 4 68999999998732 2
Q ss_pred hhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc----cccCcccCCChHHHHHHH
Q psy10236 109 ALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ----VLSTRVGRLTTSELKRLS 184 (515)
Q Consensus 109 ~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSGGerqRv~ 184 (515)
..++.++|++|+..+++.+|+.||+.+........ .....++++.++++.+|+.+ ..++.+++||||||||++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~ 158 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRV---NRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLC 158 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCC---CHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHH
Confidence 45778999999999999999999998754332111 12233456788999999853 567889999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||+|+.+|++|||||||+|||+.++..+.+.|+++++ + +|||+++|++ .++.++||++++|++|+++..|+
T Consensus 159 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~------~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 159 IARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-K------YTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGE 230 (252)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-C------CcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999975 3 6899999985 47889999999999999999998
Q ss_pred ccchH
Q psy10236 265 RRDML 269 (515)
Q Consensus 265 ~~~~~ 269 (515)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14256 231 TKKIF 235 (252)
T ss_pred HHHHH
Confidence 87653
No 163
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-43 Score=351.86 Aligned_cols=222 Identities=19% Similarity=0.195 Sum_probs=190.1
Q ss_pred CCCcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-----CCeeEEEECCeeCCh-
Q psy10236 34 PEFFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND-----AKAFQVILNGHSIPL- 107 (515)
Q Consensus 34 ~~~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-----~~~G~I~~~G~~~~~- 107 (515)
|...++|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 15 ~~~~~~l~~~nl~~~~--~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 15 PEEEIALSTKDLHVYY--GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred CCCCeEEEEeeEEEEE--CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 5566789999999987 45789999999999999999999999999999999999986 579999999998742
Q ss_pred ----hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHH
Q psy10236 108 ----NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSE 179 (515)
Q Consensus 108 ----~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGe 179 (515)
...++.++|++|++.+++ .||.||+.+....... ..+...++++.++++.++|. +..++.+++|||||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 93 EINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGV---KDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQ 168 (267)
T ss_pred cCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCC---CCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHH
Confidence 234678999999988887 5999999886432211 11233456678899999984 45788999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 180 LKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 180 rqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ + .+||+++|++ .++.++||++++|++|++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~------~tiii~tH~~-~~~~~~~d~i~~l~~G~i 240 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-N------YTIIIVTHNM-QQAARASDYTAFFYLGDL 240 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C------CEEEEEecCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999953 4 7899999986 468899999999999999
Q ss_pred EEecCccchH
Q psy10236 260 MYSGKRRDML 269 (515)
Q Consensus 260 v~~G~~~~~~ 269 (515)
++.|+++++.
T Consensus 241 ~~~g~~~~~~ 250 (267)
T PRK14237 241 IEYDKTRNIF 250 (267)
T ss_pred EEeCCHHHHh
Confidence 9999987763
No 164
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3e-43 Score=350.13 Aligned_cols=221 Identities=22% Similarity=0.241 Sum_probs=187.5
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCee-----CCh---hh
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHS-----IPL---NA 109 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~-----~~~---~~ 109 (515)
++|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|++ +.. ..
T Consensus 5 ~~l~~~~l~~~~--~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 5 PLLSVRGLTKLY--GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred ceEEEeeeEEEc--CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 479999999987 34679999999999999999999999999999999999999999999999987 532 11
Q ss_pred ----hccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHH
Q psy10236 110 ----LKRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKR 182 (515)
Q Consensus 110 ----~~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqR 182 (515)
.++.++|++|+. .+++.+|+.||+.+........ .....++++.++++.+++. ...++.+.+||||||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qr 159 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGAR---HYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQR 159 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHH
Confidence 245799999986 4677889999987643211110 1123455678899999997 47899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++. +.|||+++|+. .++.++||++++|++|++++.
T Consensus 160 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-----~~tii~isH~~-~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 160 LQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL-----GLAVVIVTHDL-AVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-----CcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999997652 27999999985 467789999999999999999
Q ss_pred cCccchH
Q psy10236 263 GKRRDML 269 (515)
Q Consensus 263 G~~~~~~ 269 (515)
|+++++.
T Consensus 234 ~~~~~~~ 240 (258)
T PRK11701 234 GLTDQVL 240 (258)
T ss_pred CCHHHHh
Confidence 9887653
No 165
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-43 Score=353.90 Aligned_cols=219 Identities=14% Similarity=0.177 Sum_probs=189.8
Q ss_pred eEEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccce
Q psy10236 39 HLQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRL 114 (515)
Q Consensus 39 ~L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i 114 (515)
+|+++|++++|... .+.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ...++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 69999999988422 2459999999999999999999999999999999999999999999999998742 3456789
Q ss_pred EEEecCCC-CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 115 VYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 115 ~yv~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
+|++|++. .++..||.||+.+....... ......++++++++.+||.+..++++.+||||||||++|||||+.+|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p 159 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGI----PREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP 159 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCC----CHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999964 67778999999876432211 12334467889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
++|||||||+|||+.++..+.+.|++++++ | +|||+++|+.. ++. .||++++|++|+++..|+++++.
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g------~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 160 EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQ------LTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC------CEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999875 5 89999999864 454 69999999999999999987764
No 166
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-43 Score=341.19 Aligned_cols=205 Identities=25% Similarity=0.338 Sum_probs=178.6
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-------hhhcc
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-------NALKR 112 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-------~~~~~ 112 (515)
+.+ ||+++| +++.+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++
T Consensus 2 ~~~-~l~~~~--~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 2 LCV-DIEKRL--PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred cee-eeeEec--CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 445 899887 44544 99999999 9999999999999999999999999999999999988631 12456
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
.++|++|+..+++.+|+.||+.+...... ....++++.++++.+|+.+..++++.+||||||||++||++|+.+
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKR------NREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQ 149 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCC------HHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcC
Confidence 89999999999999999999987643211 123345688899999999889999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
|++++|||||+|||+.++..+.+.|++++++ | +|||+++|++ .++.++||++++|++|+++..|
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~------~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 150 PELLLLDEPFSALDRALRLQLLPELKQIKKNLN------IPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC------cEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999875 5 7899999985 4688899999999999998765
No 167
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-43 Score=348.23 Aligned_cols=218 Identities=21% Similarity=0.239 Sum_probs=185.6
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC--CC---CeeEEEECCeeCCh-----
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN--DA---KAFQVILNGHSIPL----- 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~--~~---~~G~I~~~G~~~~~----- 107 (515)
++|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~--~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 4 PILQVSDLSVYY--NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred ceEEEEeeEEEE--CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 479999999987 3567999999999999999999999999999999999985 36 48999999998731
Q ss_pred hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHHH
Q psy10236 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKRL 183 (515)
Q Consensus 108 ~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqRv 183 (515)
..+++.++|++|+..+++ +||.||+.+....+... .....++++.++++.+++. +..++.+++|||||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIK---DKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRV 157 (252)
T ss_pred HhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHH
Confidence 234678999999988887 89999998765432211 1223345677889999874 456889999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ + +|||+++|++ +++.++|||+++|++|++++.|
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~------~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 229 (252)
T PRK14239 158 CIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-D------YTMLLVTRSM-QQASRISDRTGFFLDGDLIEYN 229 (252)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-C------CeEEEEECCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999864 4 6899999985 4788999999999999999999
Q ss_pred CccchH
Q psy10236 264 KRRDML 269 (515)
Q Consensus 264 ~~~~~~ 269 (515)
+++++.
T Consensus 230 ~~~~~~ 235 (252)
T PRK14239 230 DTKQMF 235 (252)
T ss_pred CHHHHH
Confidence 987764
No 168
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-43 Score=352.52 Aligned_cols=216 Identities=14% Similarity=0.201 Sum_probs=185.1
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-----CCeeEEEECCeeCC-----h
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND-----AKAFQVILNGHSIP-----L 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-----~~~G~I~~~G~~~~-----~ 107 (515)
++|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++. .
T Consensus 12 ~~l~i~nl~~~~--~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 12 IIISLQNVTISY--GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred ceEEEEeEEEEE--CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 479999999987 45679999999999999999999999999999999999987 58999999999863 2
Q ss_pred hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCC----cccccCcccCCChHHHHHH
Q psy10236 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGL----TQVLSTRVGRLTTSELKRL 183 (515)
Q Consensus 108 ~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~LSGGerqRv 183 (515)
...++.++|++|++.+++. ||.||+.+....+.. ....++++.++++.+++ .+..++++.+|||||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl 163 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGY-----TGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRL 163 (269)
T ss_pred HHHhhceEEEccCCccchh-hHHHHHhhhhhhcCC-----cHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHH
Confidence 3456789999999988874 999999886543321 11234566778888876 3457889999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC-------
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG------- 256 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~------- 256 (515)
+|||||+.+|++|||||||+|||+.++..+.++|+++++ + +|||+++|++ .++.++||++++|++
T Consensus 164 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~------~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~ 235 (269)
T PRK14259 164 CIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-N------FTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGS 235 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C------CEEEEEeCCH-HHHHHhcCEEEEEecccccccc
Confidence 999999999999999999999999999999999999954 4 6899999985 578999999999996
Q ss_pred ----CeEEEecCccchH
Q psy10236 257 ----GRTMYSGKRRDML 269 (515)
Q Consensus 257 ----G~iv~~G~~~~~~ 269 (515)
|++++.|+++++.
T Consensus 236 ~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 236 GGKVGYLVEFNETKKIF 252 (269)
T ss_pred ccccceEEEeCCHHHHH
Confidence 6789999988764
No 169
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-43 Score=347.36 Aligned_cols=218 Identities=17% Similarity=0.193 Sum_probs=186.4
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC---CCeeEEEECCeeCCh---hhhcc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND---AKAFQVILNGHSIPL---NALKR 112 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~---~~~G~I~~~G~~~~~---~~~~~ 112 (515)
+++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. ...++
T Consensus 2 ~~~~~~l~~~~--~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFY--GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEE--CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 47899999987 45679999999999999999999999999999999999974 689999999998742 34567
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHHHHHHHH
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKRLSIACC 188 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqRv~IA~a 188 (515)
.++|++|++.+++ .|+.||+.+....+.... ......+++.++++.+||. +..++.+.+|||||||||+||||
T Consensus 80 ~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 156 (246)
T PRK14269 80 NVGMVFQQPNVFV-KSIYENISYAPKLHGMIK--NKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARA 156 (246)
T ss_pred hEEEEecCCcccc-ccHHHHhhhHHhhcCccc--ChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHH
Confidence 8999999988887 699999988654332110 1123445678899999994 45688899999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
|+.+|+++||||||+|||+.++..+.+.|+++++ + +|+|+++|++ .++.++||++++|++|++++.|+++++
T Consensus 157 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~------~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 157 LAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-N------LSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-C------CEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999864 5 7899999985 468899999999999999999988765
Q ss_pred H
Q psy10236 269 L 269 (515)
Q Consensus 269 ~ 269 (515)
.
T Consensus 229 ~ 229 (246)
T PRK14269 229 F 229 (246)
T ss_pred H
Confidence 3
No 170
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-44 Score=331.34 Aligned_cols=221 Identities=22% Similarity=0.297 Sum_probs=193.1
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~ 115 (515)
||+++|++++. .++.+|+++|++++|||++||+||||||||||||+|+|.+.|++|++.+||.+++. .+..+.-+
T Consensus 1 mi~a~nls~~~--~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 1 MIRAENLSYSL--AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred CeeeeeeEEEe--ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 58899999875 67889999999999999999999999999999999999999999999999998843 45667788
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHh----
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMS---- 191 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~---- 191 (515)
.++|+..+-...||.|-+.++..-.... ....+..+.+++.|+..++.+.+.+...+|||||||||.+||.|++
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g--~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~ 156 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSG--REPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPP 156 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccC--CCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCC
Confidence 9999988877789999999875422111 1112344557889999999999999999999999999999999986
Q ss_pred --CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 192 --HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 192 --~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
++++|+||||||.||...+..++++.++++++| ..|+++.|+. +-...+||||++|++||++..|+|++++
T Consensus 157 v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g------~~V~~VLHDL-NLAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 157 VPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREG------GAVLAVLHDL-NLAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred CCCCceEEecCCccccchHHHHHHHHHHHHHHhcC------CcEEEEEccc-hHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 445999999999999999999999999999987 6788888985 4688999999999999999999999876
Q ss_pred H
Q psy10236 270 P 270 (515)
Q Consensus 270 ~ 270 (515)
.
T Consensus 230 t 230 (259)
T COG4559 230 T 230 (259)
T ss_pred C
Confidence 3
No 171
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-43 Score=350.48 Aligned_cols=223 Identities=21% Similarity=0.290 Sum_probs=192.0
Q ss_pred eEEEEeeEEeCCCC--CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-C----CeeEEEECCeeCC---hh
Q psy10236 39 HLQVRGLEVPPSSK--NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND-A----KAFQVILNGHSIP---LN 108 (515)
Q Consensus 39 ~L~v~~l~~~~~~~--~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-~----~~G~I~~~G~~~~---~~ 108 (515)
.|+++||++.|... ...+++||||++++||++||+|.|||||||+.++|.|+++ + .+|+|.++|+++. .+
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 37899999987533 3579999999999999999999999999999999999997 4 5799999999872 22
Q ss_pred h----hccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc---cccCcccCCChHH
Q psy10236 109 A----LKRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ---VLSTRVGRLTTSE 179 (515)
Q Consensus 109 ~----~~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSGGe 179 (515)
+ +-+.|+|++|++ .+.|.+||.+.+.-....+.... .+.+..+++.++|+.+||.+ ..+.++++|||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~--~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGM 158 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL--SKKEAKERAIELLELVGIPDPERRLKSYPHELSGGM 158 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcH
Confidence 2 235799999986 68899999999877665432210 23556788999999999974 6799999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 180 LKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 180 rqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
||||.||.||+.+|+|||.||||++||+..+.+|+++|++++++. +.++|++||+. .-+.++||||+||+.|++
T Consensus 159 rQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~-----~~aiilITHDl-~vva~~aDri~VMYaG~i 232 (316)
T COG0444 159 RQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREK-----GTALILITHDL-GVVAEIADRVAVMYAGRI 232 (316)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhc-----CCEEEEEeCCH-HHHHHhcceEEEEECcEE
Confidence 999999999999999999999999999999999999999998742 48999999985 578999999999999999
Q ss_pred EEecCccchH
Q psy10236 260 MYSGKRRDML 269 (515)
Q Consensus 260 v~~G~~~~~~ 269 (515)
|+.|+.++++
T Consensus 233 VE~g~~~~i~ 242 (316)
T COG0444 233 VEEGPVEEIF 242 (316)
T ss_pred EEeCCHHHHh
Confidence 9999998875
No 172
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-43 Score=347.23 Aligned_cols=218 Identities=17% Similarity=0.247 Sum_probs=186.8
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-----CeeEEEECCeeCCh-----
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-----KAFQVILNGHSIPL----- 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-----~~G~I~~~G~~~~~----- 107 (515)
++|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 2 ~~l~~~~l~~~~--~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 2 PIIEIENFSAYY--GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred ceEEEEeeEEEe--CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 479999999987 356799999999999999999999999999999999999874 89999999998742
Q ss_pred hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc----cccCcccCCChHHHHHH
Q psy10236 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ----VLSTRVGRLTTSELKRL 183 (515)
Q Consensus 108 ~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSGGerqRv 183 (515)
...++.++|++|++.+++ +|+.||+.+........ .....++.++++++.+|+.+ ..++.+.+||||||||+
T Consensus 80 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVK---SKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred HHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH
Confidence 234678999999988887 89999998765432211 12234456788899999853 47889999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ + +|+|+++|++ .++.++||++++|++|+++..|
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~------~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-N------YTIVIVTHNI-GQAIRIADYIAFMYRGELIEYG 227 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-C------cEEEEEeCCH-HHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999864 4 7899999985 4688999999999999999999
Q ss_pred CccchH
Q psy10236 264 KRRDML 269 (515)
Q Consensus 264 ~~~~~~ 269 (515)
+++++.
T Consensus 228 ~~~~~~ 233 (250)
T PRK14262 228 PTREIV 233 (250)
T ss_pred CHHHHH
Confidence 987764
No 173
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-43 Score=337.63 Aligned_cols=193 Identities=24% Similarity=0.313 Sum_probs=169.5
Q ss_pred eEEEEeeEEeCCCC--CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC---CCeeEEEECCeeCCh--hhhc
Q psy10236 39 HLQVRGLEVPPSSK--NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND---AKAFQVILNGHSIPL--NALK 111 (515)
Q Consensus 39 ~L~v~~l~~~~~~~--~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~---~~~G~I~~~G~~~~~--~~~~ 111 (515)
.+.++|+++.|+.+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. ...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 47899999998643 5679999999999999999999999999999999999999 899999999998743 2456
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHh
Q psy10236 112 RRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMS 191 (515)
Q Consensus 112 ~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~ 191 (515)
+.++|++|++.+++.+||+||+.+..... .++++.+||||||||++||+||+.
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 78999999999999999999998753210 567788999999999999999999
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|+++||||||+|||+.++..+.+.|+++++++ +.++|+++||..+++.++||++++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~-----~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVL-----KTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC-----CCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999997753 2677776666656789999999999999998764
No 174
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-43 Score=351.87 Aligned_cols=217 Identities=16% Similarity=0.210 Sum_probs=186.1
Q ss_pred CcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-----CCeeEEEECCeeCCh---
Q psy10236 36 FFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND-----AKAFQVILNGHSIPL--- 107 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-----~~~G~I~~~G~~~~~--- 107 (515)
..++|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 36 ~~~~l~i~~l~~~~--~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 36 GETVIEARDLNVFY--GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CCceEEEEEEEEEE--CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 45689999999987 45679999999999999999999999999999999999987 689999999988631
Q ss_pred --hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHH
Q psy10236 108 --NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELK 181 (515)
Q Consensus 108 --~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerq 181 (515)
...++.++|++|+..+++. ||.||+.+....+... ....++++++++.+||. +..++++.+|||||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYD-----GDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred chHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHH
Confidence 2456789999999888875 9999998765433211 13345688899999984 4578899999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEE-EEeCCeEE
Q psy10236 182 RLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVL-LVSGGRTM 260 (515)
Q Consensus 182 Rv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~-vL~~G~iv 260 (515)
||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ + +|||+++|++ .++..+|||++ +|++|+++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~------~tiii~tH~~-~~i~~~~dri~v~l~~G~i~ 259 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-E------YTVVIVTHNM-QQAARISDKTAVFLTGGELV 259 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-C------CEEEEEeCCH-HHHHhhcCEEEEEeeCCEEE
Confidence 99999999999999999999999999999999999999975 2 5899999985 47888999975 57999999
Q ss_pred EecCccch
Q psy10236 261 YSGKRRDM 268 (515)
Q Consensus 261 ~~G~~~~~ 268 (515)
..|+++++
T Consensus 260 ~~g~~~~~ 267 (285)
T PRK14254 260 EFDDTDKI 267 (285)
T ss_pred EeCCHHHH
Confidence 99987765
No 175
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-43 Score=347.28 Aligned_cols=218 Identities=19% Similarity=0.204 Sum_probs=185.9
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCC-----eeEEEECCeeCCh-----h
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAK-----AFQVILNGHSIPL-----N 108 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~-----~G~I~~~G~~~~~-----~ 108 (515)
+++++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYY--GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEE--CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 68999999987 4567999999999999999999999999999999999999864 8999999998742 2
Q ss_pred hhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCC----cccccCcccCCChHHHHHHH
Q psy10236 109 ALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGL----TQVLSTRVGRLTTSELKRLS 184 (515)
Q Consensus 109 ~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~LSGGerqRv~ 184 (515)
..++.++|++|++.+++.+|+.||+.+........ ......+.+.++++.+++ .+..++++++||||||||++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIR---DRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLC 158 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHH
Confidence 35678999999999999999999998764332111 122334556677777765 34568899999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||+|+.+|++|||||||+|||+.++..+.+.|+++++ + +|+|+++|++ .++.++|||+++|++|++++.|+
T Consensus 159 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~------~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14272 159 IARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-V------TTIIIVTHNM-HQAARVSDTTSFFLVGDLVEHGP 230 (252)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C------CeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999864 4 7899999986 46888999999999999999999
Q ss_pred ccchH
Q psy10236 265 RRDML 269 (515)
Q Consensus 265 ~~~~~ 269 (515)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14272 231 TDQLF 235 (252)
T ss_pred HHHHH
Confidence 87764
No 176
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-43 Score=382.16 Aligned_cols=222 Identities=17% Similarity=0.222 Sum_probs=193.3
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC--CeeEEEECCeeCChh----hhc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA--KAFQVILNGHSIPLN----ALK 111 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~--~~G~I~~~G~~~~~~----~~~ 111 (515)
++|+++|++++| +++.+|+|+||++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++... ..+
T Consensus 4 ~~l~~~nl~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 4 YLLEMKNITKTF--GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred ceEEEeeeEEEe--CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 579999999987 456799999999999999999999999999999999999986 899999999987421 235
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHh
Q psy10236 112 RRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMS 191 (515)
Q Consensus 112 ~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~ 191 (515)
+.++|++|++.+++.+||.||+.+....+... ........++++++++.+|+.+..++++++|||||||||+|||||+.
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~ 160 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGG-IMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK 160 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccC-CcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 67999999999999999999998865432100 00122344678899999999988999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+|++|||||||+|||+.++..+.+.|++++++| +|||+++|+. .++.++||++++|++|++++.|+++++.
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~------~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 161 QARLLILDEPTASLTESETAVLLDIIRDLKAHG------IACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999997665 7999999985 5788899999999999999999987753
No 177
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-43 Score=383.03 Aligned_cols=223 Identities=18% Similarity=0.229 Sum_probs=192.8
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---h-hhccc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---N-ALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~-~~~~~ 113 (515)
++|+++|++++| +++.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. . ..++.
T Consensus 4 ~~l~~~~l~~~~--~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 4 PYISMAGIGKSF--GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred ceEEEeeeEEEc--CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 579999999987 45679999999999999999999999999999999999999999999999998742 1 23457
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCC-CCCC--CchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRR-PPKH--SIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM 190 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~-~~~~--~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~ 190 (515)
++|++|+..+++.+||.||+.+...... .... ....+..+++.++++.+||.+..++++++|||||||||+||++|+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~ 161 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLM 161 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987532110 0000 012234567889999999998899999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 191 SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 191 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
.+|++|||||||+|||+.++..+.+.|++++++| +|||+++|++ .++..+||++++|++|++++.|+++++.
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g------~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEG------TAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 9999999999999999999999999999998766 8999999985 5788999999999999999999987753
No 178
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-43 Score=345.91 Aligned_cols=217 Identities=18% Similarity=0.253 Sum_probs=185.5
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-----CeeEEEECCeeCCh-----h
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-----KAFQVILNGHSIPL-----N 108 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-----~~G~I~~~G~~~~~-----~ 108 (515)
+|+++|+++.| +++.+++|+||++++||+++|+||||||||||+++|+|+.++ ++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 3 KISVKDLDLFY--GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred eEEEEEEEEEE--CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 58999999987 356799999999999999999999999999999999998763 68999999998742 2
Q ss_pred hhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHHHH
Q psy10236 109 ALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKRLS 184 (515)
Q Consensus 109 ~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqRv~ 184 (515)
..++.++|++|+..+++ +|+.||+.+....+... .....++++.++++.+++. +..++++++||||||||++
T Consensus 81 ~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 156 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIK---DKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLC 156 (250)
T ss_pred HHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHH
Confidence 35678999999988887 89999998865433211 1223456778889998874 4568889999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ + +|||+++|+. .++.++||++++|++|+++..|+
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~------~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 157 IARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-D------YTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C------CeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999954 4 7899999985 46889999999999999999998
Q ss_pred ccchH
Q psy10236 265 RRDML 269 (515)
Q Consensus 265 ~~~~~ 269 (515)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14240 229 TVDLF 233 (250)
T ss_pred HHHHH
Confidence 87653
No 179
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.1e-43 Score=381.29 Aligned_cols=216 Identities=21% Similarity=0.291 Sum_probs=191.8
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hh-hcc
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NA-LKR 112 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~-~~~ 112 (515)
.++|+++|++++| +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .. .++
T Consensus 9 ~~~l~~~~l~~~~--~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 9 PPLLCARSISKQY--SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred CceEEEEeEEEEe--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 3579999999987 45679999999999999999999999999999999999999999999999998742 12 235
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
.++|++|++.+++.+||.||+.+.... ....++++.++++.+||.+..++++++|||||||||+|||||+.+
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~--------~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPK--------RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhccccc--------chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 699999999999999999999875311 123346788899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
|++|||||||+|||+.++..+.+.|++++++| ++||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g------~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQG------VGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 99999999999999999999999999998766 8999999985 4688999999999999999999887653
No 180
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.6e-43 Score=347.56 Aligned_cols=214 Identities=17% Similarity=0.282 Sum_probs=177.9
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceEE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLVY 116 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~y 116 (515)
++++|+++.|..+++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 47899999874334679999999999999999999999999999999999999999999999988632 345678999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHH-----HHHHHHHHHc--CCcccccCcccCCChHHHHHHHHHHHH
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTS-----EQMGLLIEEL--GLTQVLSTRVGRLTTSELKRLSIACCL 189 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~v~~LSGGerqRv~IA~aL 189 (515)
++|+..+++ .||.||+.+... .. ...... ..+.++++.+ ++....++++.+|||||||||+|||||
T Consensus 81 ~~q~~~~~~-~tv~~nl~~~~~--~~----~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 153 (237)
T cd03252 81 VLQENVLFN-RSIRDNIALADP--GM----SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL 153 (237)
T ss_pred EcCCchhcc-chHHHHhhccCC--CC----CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 999987764 699999976431 10 011111 1234455555 666667889999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 190 MSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 190 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+.+|+++||||||+|||+.++..+.+.|+++++ | +|||+++|++. ++ ..||++++|++|++++.|+++++.
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~------~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~~ 224 (237)
T cd03252 154 IHNPRILIFDEATSALDYESEHAIMRNMHDICA-G------RTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSHDELL 224 (237)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-C------CEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999864 5 79999999864 45 569999999999999999887764
No 181
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-43 Score=345.22 Aligned_cols=217 Identities=15% Similarity=0.199 Sum_probs=185.3
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-----CeeEEEECCeeCC----hh
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-----KAFQVILNGHSIP----LN 108 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-----~~G~I~~~G~~~~----~~ 108 (515)
++++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++. ..
T Consensus 2 ~~l~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 2 NKFNIENLDLFY--GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred CeEEEeccEEEE--CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 368999999987 456799999999999999999999999999999999999886 5999999998873 22
Q ss_pred hhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHHHH
Q psy10236 109 ALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKRLS 184 (515)
Q Consensus 109 ~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqRv~ 184 (515)
..++.++|++|++.+++ .||.||+.+........ .....++++.++++.+|+. +..++++++|||||||||+
T Consensus 80 ~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIK---DKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLC 155 (249)
T ss_pred HHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCC---chHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHH
Confidence 45678999999998887 89999998764332111 1123345677888888874 4567889999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||+|+.+|+++||||||+|||+.++..+.+.|+++++ + +|||+++|++ .++.++|||+++|++|+++..|+
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~------~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~ 227 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-N------YTIVIVTHSM-QQARRISDRTAFFLMGELVEHDD 227 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C------CeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999965 3 6899999985 47899999999999999999998
Q ss_pred ccch
Q psy10236 265 RRDM 268 (515)
Q Consensus 265 ~~~~ 268 (515)
++++
T Consensus 228 ~~~~ 231 (249)
T PRK14253 228 TQVI 231 (249)
T ss_pred HHHH
Confidence 7665
No 182
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-43 Score=345.07 Aligned_cols=218 Identities=16% Similarity=0.204 Sum_probs=185.7
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-----CCeeEEEECCeeCCh-----
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND-----AKAFQVILNGHSIPL----- 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-----~~~G~I~~~G~~~~~----- 107 (515)
++|+++|++++| +++.+|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~--~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 3 NIISAKDVHLSY--GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred ceEEEEeeEEEE--CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 479999999987 45679999999999999999999999999999999999987 479999999998732
Q ss_pred hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHHH
Q psy10236 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKRL 183 (515)
Q Consensus 108 ~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqRv 183 (515)
...++.++|++|++.+++ .||.||+.+........ .....+++++++++.+++. ...++.+.+||||||||+
T Consensus 81 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 156 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVK---DKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRI 156 (251)
T ss_pred HHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHH
Confidence 235677999999988886 79999998764432211 1122345678889999984 456888999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||+.+|+++||||||+|||+.++..+.+.|+++++ + +|||+++|++ .++.++||++++|++|+++..|
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~------~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14251 157 CIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-Q------YTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAG 228 (251)
T ss_pred HHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-C------CeEEEEECCH-HHHHhhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999854 4 6899999985 4688899999999999999999
Q ss_pred CccchH
Q psy10236 264 KRRDML 269 (515)
Q Consensus 264 ~~~~~~ 269 (515)
+++++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14251 229 PTEEMF 234 (251)
T ss_pred CHHHHH
Confidence 887653
No 183
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=344.70 Aligned_cols=219 Identities=17% Similarity=0.226 Sum_probs=186.5
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCC-----eeEEEECCeeCCh----
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAK-----AFQVILNGHSIPL---- 107 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~-----~G~I~~~G~~~~~---- 107 (515)
.++++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 2 ~~~l~~~~l~~~~--~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 79 (251)
T PRK14249 2 DPKIKIRGVNFFY--HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79 (251)
T ss_pred CceEEEEEEEEEE--CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccC
Confidence 3579999999987 4567999999999999999999999999999999999999987 6999999998732
Q ss_pred -hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHH
Q psy10236 108 -NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKR 182 (515)
Q Consensus 108 -~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqR 182 (515)
...++.++|++|++.+++. |+.||+.+....+... ......+.++++++.+++. +..++.+.+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 80 VVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTT---AQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQR 155 (251)
T ss_pred hHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCC---hhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHH
Confidence 2456789999999988875 9999998865433211 1122345567788888874 45788999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
|+|||||+.+|+++||||||+|||+.++..+.++|++++ ++ +|||+++|+. .++.++||++++|++|++++.
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~------~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QN------YTIAIVTHNM-QQAARASDWTGFLLTGDLVEY 227 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cC------CEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEe
Confidence 999999999999999999999999999999999999985 44 7999999985 578899999999999999999
Q ss_pred cCccchH
Q psy10236 263 GKRRDML 269 (515)
Q Consensus 263 G~~~~~~ 269 (515)
|+++++.
T Consensus 228 ~~~~~~~ 234 (251)
T PRK14249 228 GRTGEIF 234 (251)
T ss_pred CCHHHHH
Confidence 9987764
No 184
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=4.2e-43 Score=337.11 Aligned_cols=199 Identities=19% Similarity=0.283 Sum_probs=173.2
Q ss_pred EEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---h----hhhccce
Q psy10236 42 VRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---L----NALKRRL 114 (515)
Q Consensus 42 v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~----~~~~~~i 114 (515)
++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. . ...++.+
T Consensus 1 i~~l~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKF--GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEE--CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 46888877 4567999999999999999999999999999999999999999999999999853 1 1245789
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
+|++|++.+++.+|+.||+.+....... ......+++.++++.+||.+..++++.+||||||||++||+||+.+|+
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~ 154 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKL----SKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPP 154 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999986543221 123345678899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV 254 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL 254 (515)
+|||||||+|||+.++..+.+.|++++++| .|+|+++|++. ..+.||++++|
T Consensus 155 llllDEPt~~LD~~~~~~l~~~l~~~~~~~------~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 155 LILADEPTGSLDPKNRDEVLDLLLELNDEG------KTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHHhcC------CEEEEEeCCHH--HHhhcCEEEeC
Confidence 999999999999999999999999997655 79999999863 45789999875
No 185
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=348.36 Aligned_cols=222 Identities=18% Similarity=0.214 Sum_probs=188.9
Q ss_pred CCCcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-----CCeeEEEECCeeCCh-
Q psy10236 34 PEFFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND-----AKAFQVILNGHSIPL- 107 (515)
Q Consensus 34 ~~~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-----~~~G~I~~~G~~~~~- 107 (515)
++..++++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 20 ~~~~~~l~~~nl~~~~--~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~ 97 (272)
T PRK14236 20 SDEQTALEVRNLNLFY--GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDK 97 (272)
T ss_pred CCCCcEEEEEEEEEEE--CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccc
Confidence 4455689999999987 45679999999999999999999999999999999999987 489999999998742
Q ss_pred ----hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHH
Q psy10236 108 ----NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSE 179 (515)
Q Consensus 108 ----~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGe 179 (515)
...++.++|++|+..+++. |+.||+.+........ .....+++++++++.+++. +..++.+.+|||||
T Consensus 98 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 173 (272)
T PRK14236 98 KVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGIN---NRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQ 173 (272)
T ss_pred ccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHH
Confidence 2356789999999888886 9999998765432211 1122345678889999985 35688899999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 180 LKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 180 rqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
||||+|||||+.+|+++||||||+|||+.++..+.+.|+++++ + .|||+++|++ +++.++|||+++|++|++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~------~tiiivtH~~-~~~~~~~d~i~~l~~G~i 245 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-K------YTIVIVTHNM-QQAARVSDYTAFMYMGKL 245 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C------CeEEEEeCCH-HHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999975 4 6899999985 468889999999999999
Q ss_pred EEecCccchH
Q psy10236 260 MYSGKRRDML 269 (515)
Q Consensus 260 v~~G~~~~~~ 269 (515)
+..|+++++.
T Consensus 246 ~~~g~~~~~~ 255 (272)
T PRK14236 246 VEYGDTDTLF 255 (272)
T ss_pred EecCCHHHHh
Confidence 9999887653
No 186
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=8.4e-43 Score=346.21 Aligned_cols=216 Identities=19% Similarity=0.254 Sum_probs=185.4
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC----CeeEEEECCeeCChhh-hccc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA----KAFQVILNGHSIPLNA-LKRR 113 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~----~~G~I~~~G~~~~~~~-~~~~ 113 (515)
+|+++|++++| ++.+|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|+++.... .++.
T Consensus 4 ~l~~~~l~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 80 (254)
T PRK10418 4 QIELRNIALQA---AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRK 80 (254)
T ss_pred EEEEeCeEEEe---ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccce
Confidence 69999999987 35799999999999999999999999999999999999999 9999999999875332 2457
Q ss_pred eEEEecCCC--CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc---cccCcccCCChHHHHHHHHHHH
Q psy10236 114 LVYVRSQSF--LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ---VLSTRVGRLTTSELKRLSIACC 188 (515)
Q Consensus 114 i~yv~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSGGerqRv~IA~a 188 (515)
++|++|++. +.+.+|+.+++.+....... ....+++.++++.+||.+ ..++.+++|||||||||+||||
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lara 154 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARETCLALGK------PADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALA 154 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHHHHHcCC------ChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHH
Confidence 999999974 45678999998765432221 112356888999999976 5789999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
|+.+|++|||||||+|||+.++..+.+.|++++++. +.|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 155 l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~-----g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 228 (254)
T PRK10418 155 LLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKR-----ALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVETL 228 (254)
T ss_pred HhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhc-----CcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999997642 27999999985 467889999999999999999988765
Q ss_pred H
Q psy10236 269 L 269 (515)
Q Consensus 269 ~ 269 (515)
.
T Consensus 229 ~ 229 (254)
T PRK10418 229 F 229 (254)
T ss_pred h
Confidence 3
No 187
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=348.71 Aligned_cols=220 Identities=22% Similarity=0.234 Sum_probs=188.1
Q ss_pred CcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-----CeeEEEECCeeCCh---
Q psy10236 36 FFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-----KAFQVILNGHSIPL--- 107 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-----~~G~I~~~G~~~~~--- 107 (515)
..++|+++|++++| +++.+|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 18 ~~~~l~i~nl~~~~--~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 95 (276)
T PRK14271 18 AAPAMAAVNLTLGF--AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95 (276)
T ss_pred cCcEEEEeeEEEEE--CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch
Confidence 34689999999987 457899999999999999999999999999999999999985 69999999998742
Q ss_pred -hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc----cccCcccCCChHHHHH
Q psy10236 108 -NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ----VLSTRVGRLTTSELKR 182 (515)
Q Consensus 108 -~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSGGerqR 182 (515)
...++.++|++|+..+++ .|+.||+.+....... ....+..+++.++++.+|+.+ ..++.+.+||||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 96 VLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKL---VPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred hHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHH
Confidence 245678999999988887 8999999876432211 112233455678899999964 4678899999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ + +|||+++|++ .++.++|||+++|++|+++..
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~------~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~ 243 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-R------LTVIIVTHNL-AQAARISDRAALFFDGRLVEE 243 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-C------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999865 3 6899999985 478899999999999999999
Q ss_pred cCccchH
Q psy10236 263 GKRRDML 269 (515)
Q Consensus 263 G~~~~~~ 269 (515)
|+++++.
T Consensus 244 g~~~~~~ 250 (276)
T PRK14271 244 GPTEQLF 250 (276)
T ss_pred CCHHHHH
Confidence 9987764
No 188
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-43 Score=349.90 Aligned_cols=221 Identities=15% Similarity=0.207 Sum_probs=183.3
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEe
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVR 118 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~ 118 (515)
+|+++|++++|. +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.....++.++|++
T Consensus 6 ~l~~~~l~~~~~-~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~ 84 (272)
T PRK15056 6 GIVVNDVTVTWR-NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVP 84 (272)
T ss_pred eEEEEeEEEEec-CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEec
Confidence 699999999874 3467999999999999999999999999999999999999999999999999874332334699999
Q ss_pred cCCCCC--CCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 119 SQSFLS--PELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 119 q~~~~~--~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
|++.+. ...++.+++.+................+++++++++.+||.+..++++++||||||||++|||||+.+|++|
T Consensus 85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 164 (272)
T PRK15056 85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVI 164 (272)
T ss_pred cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 987542 234788887653210000000011223456788999999999899999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
||||||+|||+.++..+.+.|++++++| +|||+++|++ +++.++||+++++ +|++++.|+++++
T Consensus 165 llDEPt~~LD~~~~~~l~~~L~~~~~~g------~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIISLLRELRDEG------KTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCC------CEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999998665 7899999985 4788999999877 8999999988765
No 189
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=351.11 Aligned_cols=220 Identities=17% Similarity=0.189 Sum_probs=186.8
Q ss_pred CcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-----CCeeEEEECCeeCCh---
Q psy10236 36 FFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND-----AKAFQVILNGHSIPL--- 107 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-----~~~G~I~~~G~~~~~--- 107 (515)
..++|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 36 ~~~~l~~~~l~~~~--~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 36 GKPHVVAKNFSIYY--GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred CceEEEEeeeEEEE--CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 45689999999987 34579999999999999999999999999999999999864 499999999988632
Q ss_pred --hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCC----cccccCcccCCChHHHH
Q psy10236 108 --NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGL----TQVLSTRVGRLTTSELK 181 (515)
Q Consensus 108 --~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~LSGGerq 181 (515)
...++.++|++|++.+++. ||.||+.+....+... .....++++.++++.+|+ .+..++++++|||||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGIN---DKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred chHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCC---cHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHH
Confidence 1356789999999888875 9999999865432211 112334567788899887 35678899999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEE
Q psy10236 182 RLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMY 261 (515)
Q Consensus 182 Rv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~ 261 (515)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ + ++||+++|++ .++.++|||+++|++|+++.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~------~tvIivsH~~-~~~~~~~d~i~~L~~G~i~~ 261 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-S------YTIMIVTHNM-QQASRVSDYTMFFYEGVLVE 261 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C------CeEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999864 3 6899999985 46788999999999999999
Q ss_pred ecCccchH
Q psy10236 262 SGKRRDML 269 (515)
Q Consensus 262 ~G~~~~~~ 269 (515)
.|+++++.
T Consensus 262 ~g~~~~~~ 269 (286)
T PRK14275 262 HAPTAQLF 269 (286)
T ss_pred eCCHHHHH
Confidence 99987764
No 190
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=348.58 Aligned_cols=218 Identities=16% Similarity=0.208 Sum_probs=184.4
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-----CCeeEEEECCeeCC-----h
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND-----AKAFQVILNGHSIP-----L 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-----~~~G~I~~~G~~~~-----~ 107 (515)
++|+++|+++.| +++.+|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++. .
T Consensus 23 ~~l~~~~l~~~~--~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 23 VVFDTQNLNLWY--GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred eEEEEeeeEEEE--CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 479999999987 35679999999999999999999999999999999999987 69999999999873 1
Q ss_pred hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcC----CcccccCcccCCChHHHHHH
Q psy10236 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELG----LTQVLSTRVGRLTTSELKRL 183 (515)
Q Consensus 108 ~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg----L~~~~~~~v~~LSGGerqRv 183 (515)
...++.++|++|++.+++ .|+.||+.+....+... .....++.+.++++.++ +.+..++++.+||||||||+
T Consensus 101 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv 176 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIK---DKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL 176 (271)
T ss_pred HHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH
Confidence 235678999999988887 49999998765332111 11223445677777775 44567889999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ + +|||+++|++ +++.++||++++|++|+++..|
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~------~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g 248 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-D------YSIIIVTHNM-QQAARISDKTAFFLNGYVNEYD 248 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-C------CEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999965 4 7899999985 4688899999999999999999
Q ss_pred CccchH
Q psy10236 264 KRRDML 269 (515)
Q Consensus 264 ~~~~~~ 269 (515)
+++++.
T Consensus 249 ~~~~~~ 254 (271)
T PRK14238 249 DTDKIF 254 (271)
T ss_pred CHHHHH
Confidence 887653
No 191
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.2e-42 Score=347.85 Aligned_cols=223 Identities=18% Similarity=0.245 Sum_probs=190.1
Q ss_pred CeEEEEeeEEeCCC-------CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---
Q psy10236 38 PHLQVRGLEVPPSS-------KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--- 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~-------~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--- 107 (515)
++|+++|+++.|.. .++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 46999999998842 14679999999999999999999999999999999999999999999999998732
Q ss_pred ---hhhccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHH
Q psy10236 108 ---NALKRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELK 181 (515)
Q Consensus 108 ---~~~~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerq 181 (515)
...++.++|++|+. .+++..|+.|++.+....... ........+++++++.+|+. ...++.+.+|||||||
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~q 158 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLS---LDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQ 158 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhcc---CCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHH
Confidence 12467899999987 467789999998764321111 01233445788999999997 6789999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEE
Q psy10236 182 RLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMY 261 (515)
Q Consensus 182 Rv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~ 261 (515)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++. ++|+|+++|++ .++.++||++++|++|++++
T Consensus 159 rl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~-----~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 159 RVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQF-----GTACLFITHDL-RLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHc-----CcEEEEEECCH-HHHHHhCCEEEEEECCEEee
Confidence 9999999999999999999999999999999999999998752 27999999985 46888999999999999999
Q ss_pred ecCccchH
Q psy10236 262 SGKRRDML 269 (515)
Q Consensus 262 ~G~~~~~~ 269 (515)
.|+++++.
T Consensus 233 ~g~~~~~~ 240 (268)
T PRK10419 233 TQPVGDKL 240 (268)
T ss_pred eCChhhcc
Confidence 99987754
No 192
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.1e-43 Score=367.30 Aligned_cols=222 Identities=23% Similarity=0.330 Sum_probs=198.9
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hhhcc
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NALKR 112 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~~~~ 112 (515)
.+.++++|++|+| +..++|+||||++++||++||+|.||||||||+|+|+|.++|++|+|.++|++... .....
T Consensus 6 ~~ll~~~~i~K~F--ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 6 PPLLELRGISKSF--GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred cceeeeecceEEc--CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 4579999999987 67889999999999999999999999999999999999999999999999998742 34678
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
.|+.|+|+..+.|+|||.||+.+......+.....+....+++.++|+.+|+....++++++||+||||.|+|||||..+
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~ 163 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFD 163 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcC
Confidence 89999999999999999999987755433222234566678899999999996559999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCc-cc
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKR-RD 267 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~-~~ 267 (515)
++|+||||||+.|+......+.+++++++++| .+||.++|. .+|++++||||.||++|+.+..++. ++
T Consensus 164 arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~G------v~ii~ISHr-l~Ei~~i~DritVlRDG~~v~~~~~~~~ 232 (500)
T COG1129 164 ARVLILDEPTAALTVKETERLFDLIRRLKAQG------VAIIYISHR-LDEVFEIADRITVLRDGRVVGTRPTAAE 232 (500)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC------CEEEEEcCc-HHHHHHhcCEEEEEeCCEEeeecccccC
Confidence 99999999999999999999999999999887 889998886 6799999999999999999998883 44
No 193
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=344.05 Aligned_cols=219 Identities=16% Similarity=0.186 Sum_probs=186.0
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC--C---CeeEEEECCeeCCh----
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND--A---KAFQVILNGHSIPL---- 107 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~--~---~~G~I~~~G~~~~~---- 107 (515)
.++++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++..
T Consensus 4 ~~~i~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (253)
T PRK14261 4 EIILSTKNLNLWY--GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81 (253)
T ss_pred cceEEEeeeEEEE--CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccc
Confidence 3579999999987 45679999999999999999999999999999999999875 3 48999999998742
Q ss_pred -hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHH
Q psy10236 108 -NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKR 182 (515)
Q Consensus 108 -~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqR 182 (515)
...++.++|++|++.+++. ||+||+.+....+... .....++.+.++++.+++. +..++.+.+||||||||
T Consensus 82 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14261 82 VVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEK---NKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQR 157 (253)
T ss_pred hhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCC---CHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHH
Confidence 2346779999999988875 9999999875433211 1123345677888988874 34688999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ + +|||+++|++ .++.++||++++|++|+++..
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~------~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-E------YTVIIVTHNM-QQAARVSDYTGFMYLGKLIEF 229 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-C------ceEEEEEcCH-HHHHhhCCEEEEEECCEEEEc
Confidence 9999999999999999999999999999999999999865 3 6899999985 467889999999999999999
Q ss_pred cCccchH
Q psy10236 263 GKRRDML 269 (515)
Q Consensus 263 G~~~~~~ 269 (515)
|+++++.
T Consensus 230 g~~~~~~ 236 (253)
T PRK14261 230 DKTTQIF 236 (253)
T ss_pred CCHHHHH
Confidence 9987653
No 194
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.2e-42 Score=337.69 Aligned_cols=210 Identities=18% Similarity=0.254 Sum_probs=182.1
Q ss_pred EEEEeeEEeCCCC--CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh------hhhc
Q psy10236 40 LQVRGLEVPPSSK--NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL------NALK 111 (515)
Q Consensus 40 L~v~~l~~~~~~~--~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~------~~~~ 111 (515)
++++|+++.+..+ .+.+|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|+++.. ...+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999987422 2679999999999999999999999999999999999999999999999998732 1346
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHh
Q psy10236 112 RRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMS 191 (515)
Q Consensus 112 ~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~ 191 (515)
+.++|++|++.+++.+|+.||+.+....... ....+..++++++++.+||.+..++.+.+||||||||++|||+|+.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~ 158 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPN---LSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVH 158 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 7899999999999999999999986543211 1123345678899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
+|++++|||||+|||+.++..+.+.|++++++. ++|||+++|++. ..++||++++|++|++
T Consensus 159 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~-----~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 159 RPKLVLADEPTAALDSKSGRDVVELMQKLAREQ-----GCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHc-----CCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 999999999999999999999999999997642 289999999863 5689999999999986
No 195
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.2e-42 Score=344.72 Aligned_cols=221 Identities=21% Similarity=0.215 Sum_probs=185.3
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCee-----CCh---hh
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHS-----IPL---NA 109 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~-----~~~---~~ 109 (515)
++|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|++ +.. ..
T Consensus 2 ~~l~~~~l~~~~--~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 2 PLLQVSGLSKSY--GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred ceEEEeeeEEEe--CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 479999999987 45678999999999999999999999999999999999999999999999976 421 11
Q ss_pred ----hccceEEEecCCC--CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHH
Q psy10236 110 ----LKRRLVYVRSQSF--LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKR 182 (515)
Q Consensus 110 ----~~~~i~yv~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqR 182 (515)
.++.++|++|++. +.+.+|+.+|+.+........ ......+.+.++++.+|+. ...++.+.+||||||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qr 156 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGAR---HYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQR 156 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhccc---chHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHH
Confidence 2457999999864 456679999987543211110 0112346788999999997 57899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++. +.|+|+++|++ .++..+||++++|++|+++..
T Consensus 157 v~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~-----~~tii~vsH~~-~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 157 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDL-----GLAVIIVTHDL-GVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-----CCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999987642 27999999985 478889999999999999999
Q ss_pred cCccchH
Q psy10236 263 GKRRDML 269 (515)
Q Consensus 263 G~~~~~~ 269 (515)
|+++++.
T Consensus 231 ~~~~~~~ 237 (253)
T TIGR02323 231 GLTDQVL 237 (253)
T ss_pred CCHHHHh
Confidence 9877653
No 196
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-42 Score=342.89 Aligned_cols=219 Identities=17% Similarity=0.194 Sum_probs=184.9
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC--C---CeeEEEECCeeCCh----
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND--A---KAFQVILNGHSIPL---- 107 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~--~---~~G~I~~~G~~~~~---- 107 (515)
.++++++|+++.| +++.+|+|+||++++||+++|+|+||||||||+++|+|+.+ | ++|+|.++|+++..
T Consensus 3 ~~~l~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14255 3 KKIITSSDVHLFY--GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80 (252)
T ss_pred cceEEEEeEEEEE--CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccccc
Confidence 4579999999987 35679999999999999999999999999999999999875 4 58999999998732
Q ss_pred -hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHH
Q psy10236 108 -NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKR 182 (515)
Q Consensus 108 -~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqR 182 (515)
...++.++|++|++.+++ .|+.||+.+....+... .....++++.+.++.+++. +..++.+++||||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 81 VVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVK---DKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQR 156 (252)
T ss_pred HHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHH
Confidence 235678999999988888 69999998765433211 1122234567778888763 45788999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ + .|+|+++|++ .++.++||++++|++|+++..
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~------~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-Q------YTIILVTHSM-HQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-C------CEEEEEECCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999965 3 6889999985 468889999999999999999
Q ss_pred cCccchH
Q psy10236 263 GKRRDML 269 (515)
Q Consensus 263 G~~~~~~ 269 (515)
|++.++.
T Consensus 229 ~~~~~~~ 235 (252)
T PRK14255 229 ADTKQMF 235 (252)
T ss_pred CCHHHHh
Confidence 9887653
No 197
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-42 Score=344.61 Aligned_cols=222 Identities=18% Similarity=0.255 Sum_probs=188.8
Q ss_pred CcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCC-----eeEEEECCeeCCh---
Q psy10236 36 FFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAK-----AFQVILNGHSIPL--- 107 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~-----~G~I~~~G~~~~~--- 107 (515)
..++|+++|++++| +++.+|+|+||++++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|+++..
T Consensus 4 ~~~~l~~~nl~~~~--~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 4 LIPAIKVNNLSFYY--DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred ccceEEEeeEEEEe--CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc
Confidence 34579999999987 4457999999999999999999999999999999999999985 8999999988631
Q ss_pred --hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHH
Q psy10236 108 --NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELK 181 (515)
Q Consensus 108 --~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerq 181 (515)
...++.++|++|+..+++ +|+.||+.+........ ...+..+++.++++.+++. +..++.+.+|||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 157 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWR---PKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQ 157 (261)
T ss_pred chHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHH
Confidence 235678999999988888 89999998764332110 1123345678899999874 3568889999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC-----
Q psy10236 182 RLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG----- 256 (515)
Q Consensus 182 Rv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~----- 256 (515)
|++|||+|+.+|++|||||||+|||+.++..+.+.|++++++. ++|||+++|++ .++.++||++++|++
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~-----~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~ 231 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRS-----ELTMVIVSHNL-HQVSRLSDFTAFFKGNENRI 231 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhC-----CCEEEEEECCH-HHHHHhcCEEEEEccCCCcC
Confidence 9999999999999999999999999999999999999987531 27999999985 578999999999999
Q ss_pred CeEEEecCccchH
Q psy10236 257 GRTMYSGKRRDML 269 (515)
Q Consensus 257 G~iv~~G~~~~~~ 269 (515)
|++++.|+++++.
T Consensus 232 G~i~~~~~~~~~~ 244 (261)
T PRK14258 232 GQLVEFGLTKKIF 244 (261)
T ss_pred ceEEEeCCHHHHH
Confidence 9999999998864
No 198
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=8e-43 Score=340.23 Aligned_cols=214 Identities=18% Similarity=0.232 Sum_probs=180.8
Q ss_pred CcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhcc
Q psy10236 36 FFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKR 112 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~ 112 (515)
..++|+++|+++.| +++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++
T Consensus 4 ~~~~i~~~~l~~~~--~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (225)
T PRK10247 4 NSPLLQLQNVGYLA--GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQ 81 (225)
T ss_pred CCceEEEeccEEee--CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHh
Confidence 44579999999987 45679999999999999999999999999999999999999999999999988632 23567
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHHHHHh
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLMS 191 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~aL~~ 191 (515)
.++|++|++.+++ .|+.||+.+....+.. ....++++++++.+|+. ...++++.+|||||||||+|||+|+.
T Consensus 82 ~i~~~~q~~~l~~-~tv~enl~~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 82 QVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ------QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred ccEEEeccccccc-ccHHHHHHhHHhhcCC------ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 8999999988887 4999999875433221 11235677899999996 57899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe-CCeEEEecCc
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS-GGRTMYSGKR 265 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~-~G~iv~~G~~ 265 (515)
+|+++||||||+|||+.++..+.+.|++++++. ++|||+++|++. ++ ..||++++|. ++..+.+|..
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-----~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQ-----NIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEARY 222 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-----CCEEEEEECChH-HH-HhCCEEEEEecccchHhhhhh
Confidence 999999999999999999999999999997642 278999999864 45 4699999994 5656666643
No 199
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=343.85 Aligned_cols=218 Identities=17% Similarity=0.222 Sum_probs=184.4
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-----CCeeEEEECCeeCCh-----h
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND-----AKAFQVILNGHSIPL-----N 108 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-----~~~G~I~~~G~~~~~-----~ 108 (515)
.-+++|+++.| +++.+|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.. .
T Consensus 5 ~~~~~~l~~~~--~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 5 HASVKNLNLWY--GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEEeeeEEEEE--CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 35789999987 45679999999999999999999999999999999999986 479999999988632 1
Q ss_pred hhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc----cccCcccCCChHHHHHHH
Q psy10236 109 ALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ----VLSTRVGRLTTSELKRLS 184 (515)
Q Consensus 109 ~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSGGerqRv~ 184 (515)
..++.++|++|++.+++. |+.||+.+....+... ......++.+.++++.+||.+ ..++.+.+||||||||++
T Consensus 83 ~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 159 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLA--KNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLC 159 (251)
T ss_pred HHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHH
Confidence 356789999999888886 9999998764332211 011233456788999999964 467889999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||+|+.+|++|||||||+|||+.++..+.+.|+++++ + +|||+++|++ .++.++|||+++|++|++++.|+
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~------~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~ 231 (251)
T PRK14244 160 IARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-N------FTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNT 231 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C------CeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999853 4 7999999986 46788999999999999999998
Q ss_pred ccchH
Q psy10236 265 RRDML 269 (515)
Q Consensus 265 ~~~~~ 269 (515)
++++.
T Consensus 232 ~~~~~ 236 (251)
T PRK14244 232 TQEIF 236 (251)
T ss_pred HHHHh
Confidence 87653
No 200
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=345.17 Aligned_cols=218 Identities=17% Similarity=0.213 Sum_probs=186.5
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-----CeeEEEECCeeCCh-----
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-----KAFQVILNGHSIPL----- 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-----~~G~I~~~G~~~~~----- 107 (515)
++|+++|+++.| +++.+|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYY--NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEE--CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 479999999987 456799999999999999999999999999999999999885 48999999998732
Q ss_pred hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHHH
Q psy10236 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKRL 183 (515)
Q Consensus 108 ~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqRv 183 (515)
...++.++|++|++.+++ +|+.||+.+....+... .+....+.+.++++.+|+. +..++.+.+|||||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 159 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKL---PQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRL 159 (259)
T ss_pred HhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHH
Confidence 235678999999998887 89999998765432211 1223345677889999883 567889999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe-----CCe
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS-----GGR 258 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~-----~G~ 258 (515)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ + +|||+++|++ .++.++||++++|+ +|+
T Consensus 160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~------~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~ 231 (259)
T PRK14260 160 CIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-E------LTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQ 231 (259)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C------CEEEEEeCCH-HHHHHhcCeEEEEeccCCCCce
Confidence 999999999999999999999999999999999999864 3 6899999985 57899999999998 599
Q ss_pred EEEecCccchH
Q psy10236 259 TMYSGKRRDML 269 (515)
Q Consensus 259 iv~~G~~~~~~ 269 (515)
+++.|+++++.
T Consensus 232 i~~~~~~~~~~ 242 (259)
T PRK14260 232 MVEFGVTTQIF 242 (259)
T ss_pred EEEeCCHHHHh
Confidence 99999988764
No 201
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.9e-42 Score=335.13 Aligned_cols=203 Identities=21% Similarity=0.306 Sum_probs=179.8
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYV 117 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv 117 (515)
++|+++|+++++ +++.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.....++.++|+
T Consensus 10 ~~l~~~~l~~~~--~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~ 87 (214)
T PRK13543 10 PLLAAHALAFSR--NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYL 87 (214)
T ss_pred ceEEEeeEEEec--CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEe
Confidence 579999999987 456799999999999999999999999999999999999999999999999987543345679999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|++.+++.+|+.||+.+....+. ....+.+.++++.++|.+..++++.+||||||||++|||+++.+|++++
T Consensus 88 ~q~~~~~~~~t~~e~l~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (214)
T PRK13543 88 GHLPGLKADLSTLENLHFLCGLHG-------RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWL 160 (214)
T ss_pred ecCcccccCCcHHHHHHHHHHhcC-------CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999989999999999988654322 1123456788999999988999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG 256 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~ 256 (515)
|||||+|||+.++..+.+.|++++++| +|+|+++|+. .++.++||++++++.
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~------~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 161 LDEPYANLDLEGITLVNRMISAHLRGG------GAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCC------CEEEEEecCh-hhhhhhcceEEEEee
Confidence 999999999999999999999998765 7899999985 578999999999864
No 202
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=384.70 Aligned_cols=224 Identities=19% Similarity=0.225 Sum_probs=193.4
Q ss_pred cCeEEEEeeEEeCCCC---------CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh
Q psy10236 37 FPHLQVRGLEVPPSSK---------NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL 107 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~---------~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~ 107 (515)
.++|+++||++.|... .+.+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 3689999999987411 2469999999999999999999999999999999999999999999999998732
Q ss_pred ------hhhccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChH
Q psy10236 108 ------NALKRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTS 178 (515)
Q Consensus 108 ------~~~~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGG 178 (515)
..+++.++||+|++ .+++.+||.||+.+....+... .....++++.++++.+||. +..++++++||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~---~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgG 467 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLL---PGKAAAARVAWLLERVGLLPEHAWRYPHEFSGG 467 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHH
Confidence 12466899999986 5889999999998765432211 1233456788999999996 6789999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCe
Q psy10236 179 ELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258 (515)
Q Consensus 179 erqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~ 258 (515)
|||||+|||||+.+|+||||||||+|||+.++.+++++|++++++. +.|||+++|+. ..+.++||||++|++|+
T Consensus 468 qrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~-----g~tvi~isHdl-~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 468 QRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDF-----GIAYLFISHDM-AVVERISHRVAVMYLGQ 541 (623)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-----CCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999998752 37999999985 57889999999999999
Q ss_pred EEEecCccchH
Q psy10236 259 TMYSGKRRDML 269 (515)
Q Consensus 259 iv~~G~~~~~~ 269 (515)
+++.|+++++.
T Consensus 542 iv~~g~~~~i~ 552 (623)
T PRK10261 542 IVEIGPRRAVF 552 (623)
T ss_pred EEEecCHHHHh
Confidence 99999988864
No 203
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.1e-42 Score=340.51 Aligned_cols=202 Identities=22% Similarity=0.264 Sum_probs=174.1
Q ss_pred eeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHH
Q psy10236 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFY 136 (515)
Q Consensus 57 L~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~ 136 (515)
|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.... ...+|++|++.+++.+||.||+.+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999874321 2358999999999999999999876
Q ss_pred hhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHH
Q psy10236 137 SHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEF 216 (515)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~ 216 (515)
....... ......++++.++++.+||.+..++++++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.
T Consensus 79 ~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 79 VDRVLPD--LSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred HHhcccC--CCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 3211111 11233455688999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 217 LRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 217 L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
|++++++. ++|||+++|++ .++.++||++++|++|+++..|+..++
T Consensus 157 l~~~~~~~-----~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 157 LMQIWEEH-----RVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHhc-----CCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCceec
Confidence 99997652 27999999985 468899999999999999998876543
No 204
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=7.9e-43 Score=368.70 Aligned_cols=225 Identities=22% Similarity=0.298 Sum_probs=195.4
Q ss_pred CcCeEEEEeeEEeCCC---------CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeC-
Q psy10236 36 FFPHLQVRGLEVPPSS---------KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI- 105 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~---------~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~- 105 (515)
..|.++++||++.|.. +...+++||||++++||++||+|+||||||||.|+|+|+.+|++|+|.++|.+.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 5678999999998853 124689999999999999999999999999999999999999999999999873
Q ss_pred -C---hhhhccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-cccCcccCCChH
Q psy10236 106 -P---LNALKRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-VLSTRVGRLTTS 178 (515)
Q Consensus 106 -~---~~~~~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSGG 178 (515)
. ....++++-+|+|++ .+.|.+||.+++........... ..+.++++.++++..||.. .++++|++||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~---~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGG 433 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGS---GAERRARVAELLELVGLPPEFLDRYPHELSGG 433 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccc---hHHHHHHHHHHHHHcCCCHHHHhcCchhcCcc
Confidence 1 123456677777765 68999999999988776544321 3455678999999999975 799999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCe
Q psy10236 179 ELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258 (515)
Q Consensus 179 erqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~ 258 (515)
||||++|||||+.+|+++++|||||.||+..+.+++++|+++.++- |.|.++++|+ ..-+..+||||+||++|+
T Consensus 434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~-----g~t~lfISHD-l~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL-----GLTYLFISHD-LAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh-----CCEEEEEeCC-HHHHHhhCceEEEEECCe
Confidence 9999999999999999999999999999999999999999998863 3788888887 567899999999999999
Q ss_pred EEEecCccchH
Q psy10236 259 TMYSGKRRDML 269 (515)
Q Consensus 259 iv~~G~~~~~~ 269 (515)
+|+.|+.+++.
T Consensus 508 iVE~G~~~~v~ 518 (539)
T COG1123 508 IVEEGPTEKVF 518 (539)
T ss_pred EEEeCCHHHHh
Confidence 99999887765
No 205
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-42 Score=345.48 Aligned_cols=216 Identities=16% Similarity=0.190 Sum_probs=184.1
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-----CCeeEEEECCeeCC-----h
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND-----AKAFQVILNGHSIP-----L 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-----~~~G~I~~~G~~~~-----~ 107 (515)
++|+++|++++| +++.+|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++. .
T Consensus 9 ~~l~i~~v~~~~--~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 9 TVLRTENLNVYY--GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred eEEEEeeeEEEE--CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 479999999987 45679999999999999999999999999999999999976 37999999998873 1
Q ss_pred hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHHH
Q psy10236 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKRL 183 (515)
Q Consensus 108 ~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqRv 183 (515)
...++.++|++|+..+++ .|+.||+.+....... .....+++.++++.+++. +..++.+.+||||||||+
T Consensus 87 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGY-----KGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCc-----chHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHH
Confidence 235678999999988887 4999999876543211 112335566778888874 356888999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe--------
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS-------- 255 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~-------- 255 (515)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ + +|||+++|++ +++.++|||+++|+
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~------~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~ 232 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-Q------YTIIIVTHNM-QQAARVSDMTAFFNVELTEGGG 232 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C------CEEEEEecCH-HHHHHhCCEEEEEecccccccc
Confidence 999999999999999999999999999999999999965 3 6899999985 57899999999998
Q ss_pred -CCeEEEecCccchH
Q psy10236 256 -GGRTMYSGKRRDML 269 (515)
Q Consensus 256 -~G~iv~~G~~~~~~ 269 (515)
+|++++.|+++++.
T Consensus 233 ~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 233 RYGYLVEFDRTEKIF 247 (264)
T ss_pred cCceEEEeCCHHHHH
Confidence 89999999988764
No 206
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-43 Score=342.64 Aligned_cols=220 Identities=17% Similarity=0.294 Sum_probs=179.4
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceEE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLVY 116 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~y 116 (515)
++++|++++|...++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999874222379999999999999999999999999999999999999999999999988632 345678999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHc--CCcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEEL--GLTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
++|+..+++ .||.||+.+...... ............+.++++.+ ++....++++.+||||||||++|||||+.+|+
T Consensus 81 ~~q~~~~~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 81 VSQDVFLFN-DTVAENIAYGRPGAT-REEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred eCCCCeecc-ccHHHHhhccCCCCC-HHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999988876 699999987532110 00000000111245666666 77777888999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
++||||||+|||+.++..+.+.|+++++ + +|||+++|++. ++.. ||++++|++|+++..|+++++.+
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~~-~------~tii~~sh~~~-~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLMK-N------RTTFVIAHRLS-TIEN-ADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcC-C------CEEEEEecCHH-HHhh-CCEEEEecCCeEeeeCCHHHHHH
Confidence 9999999999999999999999999864 4 78999999864 5654 99999999999999998776643
No 207
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2e-42 Score=332.45 Aligned_cols=200 Identities=24% Similarity=0.348 Sum_probs=175.7
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccceEE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRLVY 116 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i~y 116 (515)
+++++|+++++ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.++|
T Consensus 1 ~l~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~ 78 (204)
T PRK13538 1 MLEARNLACER--DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78 (204)
T ss_pred CeEEEEEEEEE--CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEE
Confidence 58899999987 45679999999999999999999999999999999999999999999999998742 335678999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
++|++.+++.+|+.||+.+....+. ...+++++++++.+||.+..++++.+||||||||++||+||+.+|+++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 151 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHG-------PGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLW 151 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcC-------ccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 9999989999999999988754321 123456788999999998889999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV 254 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL 254 (515)
+|||||+|||+.++..+.+.|+++++++ +|||+++|++. ++....+|++++
T Consensus 152 llDEPt~~LD~~~~~~l~~~l~~~~~~~------~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 152 ILDEPFTAIDKQGVARLEALLAQHAEQG------GMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCC------CEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999997665 79999999864 566666777776
No 208
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-42 Score=342.01 Aligned_cols=221 Identities=16% Similarity=0.255 Sum_probs=188.5
Q ss_pred CcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECC------eeCC---
Q psy10236 36 FFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNG------HSIP--- 106 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G------~~~~--- 106 (515)
..|+++++|++++| +++.+|+|+||++.+||+++|+|+||||||||+++|+|+.+|++|+|.++| +++.
T Consensus 7 ~~~~i~~~~~~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~ 84 (257)
T PRK14246 7 AEDVFNISRLYLYI--NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84 (257)
T ss_pred hhhheeeeeEEEec--CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC
Confidence 45789999999987 567899999999999999999999999999999999999999987776665 4432
Q ss_pred hhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHH
Q psy10236 107 LNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKR 182 (515)
Q Consensus 107 ~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqR 182 (515)
....++.++|++|++.+++.+|+.||+.+........ ...+..+++.++++.+|+. +..++.++.||||||||
T Consensus 85 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 161 (257)
T PRK14246 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIK---EKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQR 161 (257)
T ss_pred HHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHH
Confidence 2235678999999999999999999998865332111 1233446688899999996 45688899999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
++|||||+.+|+++||||||+|||+.++..+.+.|+++++ + .|||+++|++ ..+.++||++++|++|+++..
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~------~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~ 233 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-E------IAIVIVSHNP-QQVARVADYVAFLYNGELVEW 233 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C------cEEEEEECCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999864 3 6899999985 467799999999999999999
Q ss_pred cCccchH
Q psy10236 263 GKRRDML 269 (515)
Q Consensus 263 G~~~~~~ 269 (515)
|+++++.
T Consensus 234 g~~~~~~ 240 (257)
T PRK14246 234 GSSNEIF 240 (257)
T ss_pred CCHHHHH
Confidence 9987764
No 209
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=5.5e-42 Score=339.70 Aligned_cols=221 Identities=16% Similarity=0.201 Sum_probs=184.2
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCC--CCCCeeEEEECCeeCCh---hhhcc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR--NDAKAFQVILNGHSIPL---NALKR 112 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~--~~~~~G~I~~~G~~~~~---~~~~~ 112 (515)
++|+++|+++.| +++.+|+|+||++++||++||+|+||||||||+++|+|+ ++|++|+|.++|+++.. ...++
T Consensus 6 ~~l~~~~l~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 6 PILEIKNLHASV--NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred ceEEEEeEEEEe--CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 479999999987 346799999999999999999999999999999999998 57899999999998742 12222
Q ss_pred -ceEEEecCCCCCCCCCHHHHHHHHhhcCCCC---CCCchhhHHHHHHHHHHHcCCc-ccccCccc-CCChHHHHHHHHH
Q psy10236 113 -RLVYVRSQSFLSPELNVAQTLTFYSHLRRPP---KHSIKVTTSEQMGLLIEELGLT-QVLSTRVG-RLTTSELKRLSIA 186 (515)
Q Consensus 113 -~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~-~LSGGerqRv~IA 186 (515)
.++|++|++.+++.+|+.+++.+........ ......+..+++.++++.+|+. ...++.+. +|||||||||+||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 163 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEIL 163 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHH
Confidence 5889999999999999999987754321100 0001112345678899999997 56788887 4999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhh-ccEEEEEeCCeEEEecCc
Q psy10236 187 CCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTM-ISRVLLVSGGRTMYSGKR 265 (515)
Q Consensus 187 ~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~-~Drv~vL~~G~iv~~G~~ 265 (515)
+||+.+|+++||||||+|||+.++..+.+.|++++++| +|||+++|++. .+... ||++++|++|++++.|++
T Consensus 164 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g------~tii~~tH~~~-~~~~~~~d~i~~l~~G~i~~~~~~ 236 (252)
T CHL00131 164 QMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSE------NSIILITHYQR-LLDYIKPDYVHVMQNGKIIKTGDA 236 (252)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC------CEEEEEecCHH-HHHhhhCCEEEEEeCCEEEEecCh
Confidence 99999999999999999999999999999999998655 79999999853 45555 899999999999999988
Q ss_pred cc
Q psy10236 266 RD 267 (515)
Q Consensus 266 ~~ 267 (515)
+.
T Consensus 237 ~~ 238 (252)
T CHL00131 237 EL 238 (252)
T ss_pred hh
Confidence 74
No 210
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.4e-43 Score=315.07 Aligned_cols=212 Identities=23% Similarity=0.320 Sum_probs=188.7
Q ss_pred eEEEEeeEEeCCC--CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---h---h-
Q psy10236 39 HLQVRGLEVPPSS--KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---N---A- 109 (515)
Q Consensus 39 ~L~v~~l~~~~~~--~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~---~- 109 (515)
.|+++++++.... +...||++|++.|++||-+||+|||||||||||-+++|+..|++|+|.+.|+++.. + .
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 5888998876532 34679999999999999999999999999999999999999999999999998842 1 2
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHH
Q psy10236 110 LKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCL 189 (515)
Q Consensus 110 ~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL 189 (515)
..+++|+|+|...+.|+||..||+.....+++.. ..+....+.++++.+||.+..+.+|++|||||||||+||||+
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~----~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAf 161 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGES----SADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAF 161 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCc----cccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHh
Confidence 3478999999999999999999999998887632 233456688899999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEE
Q psy10236 190 MSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMY 261 (515)
Q Consensus 190 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~ 261 (515)
+..|+|||.||||-+||..+..+|.++|-.+.++. |.|.|+++|+| .+..-|||++-|.+|+++.
T Consensus 162 a~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~-----G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 162 AGRPDVLFADEPTGNLDRATGDKIADLLFALNRER-----GTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred cCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhc-----CceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 99999999999999999999999999999998753 48999999987 5788899999999999875
No 211
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.1e-42 Score=338.35 Aligned_cols=204 Identities=19% Similarity=0.241 Sum_probs=176.0
Q ss_pred eeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC----CeeEEEECCeeCChhhh-ccceEEEecCCC--CCCCCC
Q psy10236 56 FVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA----KAFQVILNGHSIPLNAL-KRRLVYVRSQSF--LSPELN 128 (515)
Q Consensus 56 iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~----~~G~I~~~G~~~~~~~~-~~~i~yv~q~~~--~~~~lT 128 (515)
+++|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57999999999999999999999999999999999998 89999999998754333 357999999974 567789
Q ss_pred HHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc---ccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q psy10236 129 VAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT---QVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFM 205 (515)
Q Consensus 129 v~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgL 205 (515)
+.|++.+........ ....++++.++++.+|+. +..++.+.+|||||||||+|||||+.+|++|||||||+||
T Consensus 81 ~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~L 156 (230)
T TIGR02770 81 MGNHAIETLRSLGKL----SKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDL 156 (230)
T ss_pred HHHHHHHHHHHcCcc----HHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 999997754332211 123456788999999998 5689999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 206 DIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 206 D~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
|+.++..+.+.|++++++. ++|||+++|++ .++..+||++++|++|+++..|+++++.
T Consensus 157 D~~~~~~l~~~l~~~~~~~-----~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 157 DVVNQARVLKLLRELRQLF-----GTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred CHHHHHHHHHHHHHHHHhc-----CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999997642 27999999985 4788899999999999999999887764
No 212
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-42 Score=345.23 Aligned_cols=216 Identities=16% Similarity=0.183 Sum_probs=183.8
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-----CeeEEEECCeeCCh-----
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-----KAFQVILNGHSIPL----- 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-----~~G~I~~~G~~~~~----- 107 (515)
++|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.++ ++|+|.++|+++..
T Consensus 19 ~~l~~~nl~~~~--~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFY--GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEe--CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 489999999987 456799999999999999999999999999999999999863 58999999998732
Q ss_pred hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHHH
Q psy10236 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKRL 183 (515)
Q Consensus 108 ~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqRv 183 (515)
..+++.++|++|+..+++. ||.||+.+....+.. ....++.+.+.++.+++. +..++++.+|||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGY-----KGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRL 170 (274)
T ss_pred HHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCc-----hHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHH
Confidence 2356789999999888875 999999876433211 112234466778888863 557888999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe--------
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS-------- 255 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~-------- 255 (515)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ + +|||+++|++ .++.++|||+++|+
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~------~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~~ 242 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-Q------YTIIMVTHNM-QQASRVADWTAFFNTEIDEYGK 242 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C------CEEEEEeCCH-HHHHHhCCEEEEEecccccccc
Confidence 999999999999999999999999999999999999964 4 6899999986 47889999999998
Q ss_pred -CCeEEEecCccchH
Q psy10236 256 -GGRTMYSGKRRDML 269 (515)
Q Consensus 256 -~G~iv~~G~~~~~~ 269 (515)
+|++++.|+++++.
T Consensus 243 ~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 243 RRGKLVEFSPTEQMF 257 (274)
T ss_pred cCceEEEeCCHHHHH
Confidence 89999999998764
No 213
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=3.8e-42 Score=328.03 Aligned_cols=187 Identities=35% Similarity=0.527 Sum_probs=167.0
Q ss_pred CeEEEEeeEEeCCCC----CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC--CCCeeEEEECCeeCChhhhc
Q psy10236 38 PHLQVRGLEVPPSSK----NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN--DAKAFQVILNGHSIPLNALK 111 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~----~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~--~~~~G~I~~~G~~~~~~~~~ 111 (515)
+.++++|++++|... .+.+|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.....+
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 81 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence 458999999988421 267999999999999999999999999999999999999 99999999999988654567
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHh
Q psy10236 112 RRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMS 191 (515)
Q Consensus 112 ~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~ 191 (515)
+.++|++|++.+++.+|+.||+.+..... +||||||||++|||||+.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~~i~~~~~~~---------------------------------~LS~G~~qrv~laral~~ 128 (194)
T cd03213 82 KIIGYVPQDDILHPTLTVRETLMFAAKLR---------------------------------GLSGGERKRVSIALELVS 128 (194)
T ss_pred heEEEccCcccCCCCCcHHHHHHHHHHhc---------------------------------cCCHHHHHHHHHHHHHHc
Confidence 78999999999999999999997642100 799999999999999999
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|+++||||||+|||+.++..+.+.|+++++++ +|+|+++|++..++.++||++++|++|++++.|
T Consensus 129 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~------~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 129 NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTG------RTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC------CEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999997665 899999998755688899999999999998764
No 214
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.4e-42 Score=373.54 Aligned_cols=221 Identities=17% Similarity=0.247 Sum_probs=188.8
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC--CeeEEEECCeeCChh----hhcc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA--KAFQVILNGHSIPLN----ALKR 112 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~--~~G~I~~~G~~~~~~----~~~~ 112 (515)
+|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... ..++
T Consensus 1 ~l~i~~l~~~~--~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 1 LLEMKGIVKTF--GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred CEEEEeEEEEe--CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 47899999987 456799999999999999999999999999999999999986 799999999987431 2356
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccc-cCcccCCChHHHHHHHHHHHHHh
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVL-STRVGRLTTSELKRLSIACCLMS 191 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~v~~LSGGerqRv~IA~aL~~ 191 (515)
.++|++|++.+++.+||.||+.+.................++++++++.+||.+.. ++++++|||||||||+||+||+.
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~ 158 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK 158 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh
Confidence 79999999989999999999987643221000001223446788999999998765 67799999999999999999999
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
+|++|||||||+|||+.++..+.+.|++++++| +|||+++|+. .++.++||++++|++|+++..|+++++
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g------~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 159 QARLLILDEPSSSLTEKETEILLDIIRDLKAHG------VACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC------CEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999998766 7999999985 578899999999999999999987654
No 215
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-43 Score=320.34 Aligned_cols=221 Identities=18% Similarity=0.213 Sum_probs=197.0
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC----------
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---------- 106 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---------- 106 (515)
.+.|+++||.++| +...+|++||++.++|+++.|||.|||||||+|++|.-+.+|+.|.|.+||+.+.
T Consensus 4 ~~~l~v~dlHK~~--G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 4 ENALEVEDLHKRY--GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred ccceehhHHHhhc--ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 3569999999987 7788999999999999999999999999999999999999999999999998761
Q ss_pred ---h---hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHH
Q psy10236 107 ---L---NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSEL 180 (515)
Q Consensus 107 ---~---~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGer 180 (515)
. +.+|.+.++|+|...++++|||.||+.-+.-.-.. ..+.+..++++.+|+++||.+..+.+|..|||||+
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg---~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQ 158 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLG---VSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQ 158 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhc---CCHHHHHHHHHHHHHHhCchhhhhcCccccCchHH
Confidence 1 13567799999999999999999998764321111 12466778899999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEE
Q psy10236 181 KRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTM 260 (515)
Q Consensus 181 qRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv 260 (515)
||++|||||+.+|+++++|||||+|||.-.-++++.+++|+++| +|.++++|. +..+.+...+|++|++|.+-
T Consensus 159 QR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEg------rTMv~VTHE-M~FAR~Vss~v~fLh~G~iE 231 (256)
T COG4598 159 QRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG------RTMVVVTHE-MGFARDVSSHVIFLHQGKIE 231 (256)
T ss_pred HHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhC------CeEEEEeee-hhHHHhhhhheEEeecceec
Confidence 99999999999999999999999999999999999999999988 888888886 45678889999999999999
Q ss_pred EecCccchH
Q psy10236 261 YSGKRRDML 269 (515)
Q Consensus 261 ~~G~~~~~~ 269 (515)
+.|+|++++
T Consensus 232 E~G~P~qvf 240 (256)
T COG4598 232 EEGPPEQVF 240 (256)
T ss_pred ccCChHHHh
Confidence 999999874
No 216
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-42 Score=373.01 Aligned_cols=218 Identities=19% Similarity=0.273 Sum_probs=189.2
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hhhccc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~~~~~ 113 (515)
|+|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..+++.
T Consensus 3 ~~l~~~~l~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 3 PYLSFDGIGKTF--PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred ceEEEeeeEEEE--CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 579999999987 45679999999999999999999999999999999999999999999999998742 234678
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
++|++|++.+++.+||.||+.+........ .....+.++++.++++.+||.+..++++++|||||||||+|||+|+.+|
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p 159 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGG-IVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNA 159 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccC-CCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCC
Confidence 999999999999999999998753211100 0112334567889999999998889999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCc
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKR 265 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~ 265 (515)
++|||||||+|||+.++..+.+.|++++++| +|||+++|++ .++..+|||+++|++|+++..++.
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g------~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 160 RVIAFDEPTSSLSAREIEQLFRVIRELRAEG------RVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHHHhCC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999998765 8999999985 478899999999999999977654
No 217
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.5e-42 Score=335.19 Aligned_cols=205 Identities=23% Similarity=0.344 Sum_probs=173.3
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~ 115 (515)
.++++|+++.|..+++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 488999999874323579999999999999999999999999999999999999999999999998632 23466899
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcc-----------cCCChHHHHHHH
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRV-----------GRLTTSELKRLS 184 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v-----------~~LSGGerqRv~ 184 (515)
|++|++.+++ .|+.||+.+.... . ..+++.++++.+++.+..++.+ .+||||||||++
T Consensus 82 ~~~q~~~~~~-~tv~e~l~~~~~~---~-------~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~ 150 (220)
T cd03245 82 YVPQDVTLFY-GTLRDNITLGAPL---A-------DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVA 150 (220)
T ss_pred EeCCCCcccc-chHHHHhhcCCCC---C-------CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHH
Confidence 9999988776 6999998764211 0 1234567788888877666644 689999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ + +|||+++|++. .+ ++||++++|++|++++.|
T Consensus 151 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~------~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-D------KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-C------CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999999864 2 68999999864 44 799999999999998754
No 218
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-42 Score=340.67 Aligned_cols=217 Identities=17% Similarity=0.154 Sum_probs=186.0
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-----CeeEEEECCeeCCh----
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-----KAFQVILNGHSIPL---- 107 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-----~~G~I~~~G~~~~~---- 107 (515)
.+.+.++++++.| +++.+|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 6 ~~~~~~~~~~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 83 (261)
T PRK14263 6 PIVMDCKLDKIFY--GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83 (261)
T ss_pred CceEEEEeEEEEe--CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccc
Confidence 4579999999887 567899999999999999999999999999999999999986 79999999998732
Q ss_pred -hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc----cccCcccCCChHHHHH
Q psy10236 108 -NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ----VLSTRVGRLTTSELKR 182 (515)
Q Consensus 108 -~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSGGerqR 182 (515)
..+++.++|++|++.++ .+|+.||+.+....+.. .....+++.++++.++|.+ ..++++++||||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 84 PVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRY-----KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred hHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCc-----hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 23567799999998877 59999999887543321 1223467888999999854 3467788999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe-------
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS------- 255 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~------- 255 (515)
++|||||+.+|++|||||||+|||+.++.++.+.|+++++ + +|+|+++|++ .++.++|||+++|+
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~------~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~ 229 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-D------YTIALVTHNM-QQAIRVADTTAFFSVDISQGT 229 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C------CeEEEEeCCH-HHHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999953 4 7899999985 46889999999996
Q ss_pred -CCeEEEecCccchH
Q psy10236 256 -GGRTMYSGKRRDML 269 (515)
Q Consensus 256 -~G~iv~~G~~~~~~ 269 (515)
+|+++..|+++++.
T Consensus 230 ~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 230 RTGYLVEMGPTAQIF 244 (261)
T ss_pred CCceEEEeCCHHHHH
Confidence 89999999987764
No 219
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.8e-42 Score=411.23 Aligned_cols=226 Identities=19% Similarity=0.249 Sum_probs=202.6
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccce
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRL 114 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i 114 (515)
..+|+++||+++|..+++.+|+||||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.+
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence 34799999999984324679999999999999999999999999999999999999999999999998842 2356789
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
||++|++.+++.+||+|++.+.+.+++.. ..+.+++++++++.+||.+..|+++++|||||||||+||+||+.+|+
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~----~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~ 2090 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVP----AEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP 2090 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999887765422 23345678899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHHHHH
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFA 273 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~~f~ 273 (515)
|+||||||+|||+.+++.+.+.|++++++| +|||+++|+ .+++..+|||+++|.+|+++..|+++++...|.
T Consensus 2091 VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g------~TIILtTH~-mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2091 LVLLDEPTTGMDPQARRMLWNTIVSIIREG------RAVVLTSHS-MEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCC------CEEEEEeCC-HHHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 999999999999999999999999998766 899999998 468999999999999999999999999877653
No 220
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-42 Score=316.37 Aligned_cols=217 Identities=23% Similarity=0.254 Sum_probs=194.6
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYV 117 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv 117 (515)
+++.+++++.+|......+|+|+|++|.+||.++++||||||||||||+++|..+|..|+|.+||++++... ..-|.|
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg--aergvV 79 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG--AERGVV 79 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC--ccceeE
Confidence 568899999988544556999999999999999999999999999999999999999999999999985432 235789
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|++.++|.+|+.||+.|+.++++.. +....+.+.+++..+||.+..++.+-+|||||||||.|||||+.+|++|+
T Consensus 80 FQ~~~LlPWl~~~dNvafgL~l~Gi~----k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~Ll 155 (259)
T COG4525 80 FQNEALLPWLNVIDNVAFGLQLRGIE----KAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLL 155 (259)
T ss_pred eccCccchhhHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEe
Confidence 99999999999999999999988753 45667888999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe--CCeEEEecCcc
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS--GGRTMYSGKRR 266 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~--~G~iv~~G~~~ 266 (515)
||||+.+||..+++++-++|-++.+.. |+.+++++|+ .+|+.-+++|++||+ .||++..-+++
T Consensus 156 LDEPfgAlDa~tRe~mQelLldlw~~t-----gk~~lliTH~-ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 156 LDEPFGALDALTREQMQELLLDLWQET-----GKQVLLITHD-IEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred ecCchhhHHHHHHHHHHHHHHHHHHHh-----CCeEEEEecc-HHHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999999999987653 4888888887 468888999999997 58999888776
No 221
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=3.4e-42 Score=340.72 Aligned_cols=209 Identities=22% Similarity=0.322 Sum_probs=180.8
Q ss_pred EEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceEEE
Q psy10236 41 QVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLVYV 117 (515)
Q Consensus 41 ~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~yv 117 (515)
+++||++. .+|+|+||++++||+++|+||||||||||+++|+|+.+ .+|+|.++|+++.. ...++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 57788763 27999999999999999999999999999999999986 48999999998742 2345679999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHh------
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMS------ 191 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~------ 191 (515)
+|++.+++.+|+.||+.+...... ......++++++++.+||.+..++++++||||||||++||+||+.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~ 149 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKT-----RTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDIN 149 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCC-----CcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccC
Confidence 999888888999999987632111 112335678899999999988999999999999999999999998
Q ss_pred -CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 192 -HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 192 -~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
+|++|||||||+|||+.++..+.+.|+++++++ +|||+++|+. .++.++||++++|++|+++..|+.+++
T Consensus 150 p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~------~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 150 PAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQG------IAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCC------CEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 679999999999999999999999999998665 7999999985 468899999999999999999987655
No 222
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=349.43 Aligned_cols=220 Identities=15% Similarity=0.186 Sum_probs=186.8
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-----CCeeEEEECCeeCCh-----
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND-----AKAFQVILNGHSIPL----- 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-----~~~G~I~~~G~~~~~----- 107 (515)
.+++++|++++|..+.+.+|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 4799999999985445679999999999999999999999999999999999986 579999999999842
Q ss_pred hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHHH
Q psy10236 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKRL 183 (515)
Q Consensus 108 ~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqRv 183 (515)
..+++.++|++|++.+++ .|++||+.|........ ......+.+.++++.++|. ...++++.+||||||||+
T Consensus 159 ~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~---~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl 234 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGIN---DRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRL 234 (329)
T ss_pred HhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCC---hHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHH
Confidence 245778999999998875 79999999864332111 1122234467788888873 356788889999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||+.+|+||||||||+|||+.+...+.+.|+++.+ + +|+|+++|+. ..+.++||||++|++|++++.|
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~------~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-K------YSIIIVTHSM-AQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999865 3 7999999985 4678889999999999999999
Q ss_pred CccchH
Q psy10236 264 KRRDML 269 (515)
Q Consensus 264 ~~~~~~ 269 (515)
+++++.
T Consensus 307 ~~~~l~ 312 (329)
T PRK14257 307 ETKTIF 312 (329)
T ss_pred CHHHHh
Confidence 998875
No 223
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=4.4e-42 Score=329.31 Aligned_cols=196 Identities=24% Similarity=0.367 Sum_probs=174.5
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccceEEE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRLVYV 117 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i~yv 117 (515)
|+++|+++.| +++.+|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. ...++.++|+
T Consensus 1 l~i~~l~~~~--~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (201)
T cd03231 1 LEADELTCER--DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYL 78 (201)
T ss_pred CEEEEEEEEe--CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEe
Confidence 4789999987 45679999999999999999999999999999999999999999999999988632 3456789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|+..+++.+|++||+.+.... ...++++++++.+|+.+..++++.+||||||||++|||||+.+|+++|
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 148 (201)
T cd03231 79 GHAPGIKTTLSVLENLRFWHAD----------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWI 148 (201)
T ss_pred ccccccCCCcCHHHHHHhhccc----------ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999888999999999875311 123567889999999988999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV 254 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL 254 (515)
|||||+|||+.++..+.+.|++++++| +|+|+++|++. +....|++++++
T Consensus 149 lDEPt~~LD~~~~~~l~~~l~~~~~~g------~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 149 LDEPTTALDKAGVARFAEAMAGHCARG------GMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCC------CEEEEEecCch-hhhhccceeEec
Confidence 999999999999999999999987765 78999999865 678899999887
No 224
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-42 Score=380.31 Aligned_cols=225 Identities=16% Similarity=0.189 Sum_probs=191.4
Q ss_pred CcCeEEEEeeEEeCCCC--CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC-------
Q psy10236 36 FFPHLQVRGLEVPPSSK--NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP------- 106 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~--~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~------- 106 (515)
..++|+++|++++|..+ ..++|+||||++++||++||+||||||||||+++|+|+++|++|+|.++|..+.
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 45689999999988422 347999999999999999999999999999999999999999999999986431
Q ss_pred ------hh---hh-ccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc---ccccCc
Q psy10236 107 ------LN---AL-KRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT---QVLSTR 171 (515)
Q Consensus 107 ------~~---~~-~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~ 171 (515)
.. .. ++.++||+|++ .+++.+||.||+.+........ ...+.++++.++++.+||. +..+++
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 165 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGA---SREEAMVEAKRMLDQVRIPEAQTILSRY 165 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHCCCCChhhHHhCC
Confidence 11 12 24799999987 6788999999999876542111 1234557788999999995 357999
Q ss_pred ccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEE
Q psy10236 172 VGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRV 251 (515)
Q Consensus 172 v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv 251 (515)
+++|||||||||+||+||+.+|+||||||||+|||+.++.++.++|++++++. ++|||+++|+. .++.++||||
T Consensus 166 ~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~-----g~tvi~itHdl-~~~~~~adri 239 (623)
T PRK10261 166 PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM-----SMGVIFITHDM-GVVAEIADRV 239 (623)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhc-----CCEEEEEcCCH-HHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999998652 27999999985 5788999999
Q ss_pred EEEeCCeEEEecCccchH
Q psy10236 252 LLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 252 ~vL~~G~iv~~G~~~~~~ 269 (515)
++|++|++++.|+++++.
T Consensus 240 ~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 240 LVMYQGEAVETGSVEQIF 257 (623)
T ss_pred EEeeCCeecccCCHHHhh
Confidence 999999999999887664
No 225
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.5e-42 Score=362.97 Aligned_cols=224 Identities=21% Similarity=0.292 Sum_probs=194.8
Q ss_pred CeEEEEeeEEeCCCCC--cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCC----eeEEEECCeeCC---hh
Q psy10236 38 PHLQVRGLEVPPSSKN--KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAK----AFQVILNGHSIP---LN 108 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~--~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~----~G~I~~~G~~~~---~~ 108 (515)
++|+|+||++.|...+ ..+++||||++.+||++||+|.|||||||+.++|.|++++. +|+|.++|+++. ..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 4799999999875333 35999999999999999999999999999999999999876 899999999762 21
Q ss_pred ----hhccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccC--cccCCChHHH
Q psy10236 109 ----ALKRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLST--RVGRLTTSEL 180 (515)
Q Consensus 109 ----~~~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--~v~~LSGGer 180 (515)
...+.|+|++|++ .+.|-+|+.+.+.-....+... ...+.++++.++|+.+||.+.... ++++||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~---~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~r 160 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKG---SRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMR 160 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHH
Confidence 1346799999986 5778899999988766655422 146778889999999999766554 9999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEE
Q psy10236 181 KRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTM 260 (515)
Q Consensus 181 qRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv 260 (515)
|||.||+||+.+|+|||+||||++||+.++.+|+++|+++.++. |.++|+++|++ .-+.++||||+||++|++|
T Consensus 161 QRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~-----g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 161 QRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQREL-----GMAVLFITHDL-GVVAELADRVVVMYKGEIV 234 (539)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHc-----CcEEEEEcCCH-HHHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999998753 48999999985 4689999999999999999
Q ss_pred EecCccchHH
Q psy10236 261 YSGKRRDMLP 270 (515)
Q Consensus 261 ~~G~~~~~~~ 270 (515)
+.|++++++.
T Consensus 235 E~G~~~~i~~ 244 (539)
T COG1123 235 ETGPTEEILS 244 (539)
T ss_pred EecCHHHHHh
Confidence 9999999875
No 226
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.8e-42 Score=340.27 Aligned_cols=215 Identities=18% Similarity=0.276 Sum_probs=176.1
Q ss_pred EEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceE
Q psy10236 40 LQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLV 115 (515)
Q Consensus 40 L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~ 115 (515)
++++|+++.|... ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ...++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999987432 3569999999999999999999999999999999999999999999999988632 23456799
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHH-----HHHHHHHHc--CCcccccCcccCCChHHHHHHHHHHH
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSE-----QMGLLIEEL--GLTQVLSTRVGRLTTSELKRLSIACC 188 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~v~~LSGGerqRv~IA~a 188 (515)
|++|++.+++ .||.||+.+...... .....+ .+.++++.+ ++....++.+.+|||||||||+||++
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~a 153 (238)
T cd03249 81 LVSQEPVLFD-GTIAENIRYGKPDAT------DEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARA 153 (238)
T ss_pred EECCchhhhh-hhHHHHhhccCCCCC------HHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHH
Confidence 9999988776 699999977432110 111111 123344444 56666788889999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
|+.+|+++||||||+|||+.++..+.+.|++++ +| ++||+++|++. ++. .||++++|++|++++.|+.+++
T Consensus 154 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g------~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~ 224 (238)
T cd03249 154 LLRNPKILLLDEATSALDAESEKLVQEALDRAM-KG------RTTIVIAHRLS-TIR-NADLIAVLQNGQVVEQGTHDEL 224 (238)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CC------CEEEEEeCCHH-HHh-hCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999986 55 78999999864 554 8999999999999999987765
Q ss_pred HH
Q psy10236 269 LP 270 (515)
Q Consensus 269 ~~ 270 (515)
.+
T Consensus 225 ~~ 226 (238)
T cd03249 225 MA 226 (238)
T ss_pred hh
Confidence 43
No 227
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-41 Score=337.54 Aligned_cols=217 Identities=14% Similarity=0.206 Sum_probs=185.2
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-----CCeeEEEECCeeCCh-----h
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND-----AKAFQVILNGHSIPL-----N 108 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-----~~~G~I~~~G~~~~~-----~ 108 (515)
+++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. .
T Consensus 3 ~l~~~~v~~~~--~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYF--DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEe--CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 58999999987 45679999999999999999999999999999999999864 389999999998742 2
Q ss_pred hhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHHHHHH
Q psy10236 109 ALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSELKRLS 184 (515)
Q Consensus 109 ~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGerqRv~ 184 (515)
..++.++|++|++.+++. |+.||+.+........ .....++++.++++.+|+. +..++.+.+||||||||++
T Consensus 81 ~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~ 156 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGED---DEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLC 156 (250)
T ss_pred HHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCC---CHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHH
Confidence 456789999999988875 9999998764322111 1223456788899999984 3468889999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||||+.+|++|+|||||+|||+.++..+.+.|+++++ + +|||+++|++ .++...||++++|++|++++.|+
T Consensus 157 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~------~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 157 IARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-D------YTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGL 228 (250)
T ss_pred HHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C------CeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999964 4 7899999985 57899999999999999999999
Q ss_pred ccchH
Q psy10236 265 RRDML 269 (515)
Q Consensus 265 ~~~~~ 269 (515)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14266 229 TDQIF 233 (250)
T ss_pred HHHHH
Confidence 87763
No 228
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.8e-42 Score=373.38 Aligned_cols=222 Identities=20% Similarity=0.230 Sum_probs=188.9
Q ss_pred cCeEEEEeeEEeCCC---CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEEC-Cee---CCh--
Q psy10236 37 FPHLQVRGLEVPPSS---KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILN-GHS---IPL-- 107 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~---~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~-G~~---~~~-- 107 (515)
.++|+++|++++|.. +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +..
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 458999999998742 23579999999999999999999999999999999999999999999996 642 211
Q ss_pred ----hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-----cccCcccCCChH
Q psy10236 108 ----NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-----VLSTRVGRLTTS 178 (515)
Q Consensus 108 ----~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~v~~LSGG 178 (515)
...+++++|++|+..+++.+||.||+.+...+.. .....++++.++++.+||.+ ..++++++||||
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLEL-----PDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEG 431 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHH
Confidence 1235679999999889999999999987543211 12223467888999999975 578999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCe
Q psy10236 179 ELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258 (515)
Q Consensus 179 erqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~ 258 (515)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++. +.|||+++|+. .++.++|||+++|++|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~-----g~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 505 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEM-----EQTFIIVSHDM-DFVLDVCDRAALMRDGK 505 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc-----CcEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999997652 27999999985 57889999999999999
Q ss_pred EEEecCccchH
Q psy10236 259 TMYSGKRRDML 269 (515)
Q Consensus 259 iv~~G~~~~~~ 269 (515)
++..|+++++.
T Consensus 506 i~~~g~~~~~~ 516 (520)
T TIGR03269 506 IVKIGDPEEIV 516 (520)
T ss_pred EEEECCHHHHH
Confidence 99999887654
No 229
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=7.7e-42 Score=407.52 Aligned_cols=225 Identities=20% Similarity=0.300 Sum_probs=201.6
Q ss_pred CcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccc
Q psy10236 36 FFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRR 113 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~ 113 (515)
..+.|+++||++.|..+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.
T Consensus 925 ~~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~ 1004 (2272)
T TIGR01257 925 LVPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQS 1004 (2272)
T ss_pred CCceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhc
Confidence 345899999999984345789999999999999999999999999999999999999999999999998843 345678
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
+||++|++.+++.+||+||+.+.++++... ..+.+++++++++.+||.+..++++++|||||||||+||+||+.+|
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~----~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~P 1080 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRS----WEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDA 1080 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999987665421 2344567899999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHHHH
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYF 272 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~~f 272 (515)
+++||||||+|||+.++..+.++|++++ +| +|||+++|+. +++..+||||++|++|+++..|+++++...|
T Consensus 1081 kVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g------~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1081 KVVVLDEPTSGVDPYSRRSIWDLLLKYR-SG------RTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHh-CC------CEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 9999999999999999999999999995 45 8999999985 5788999999999999999999998887654
No 230
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=5.3e-42 Score=334.28 Aligned_cols=202 Identities=23% Similarity=0.246 Sum_probs=174.1
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEec
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRS 119 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q 119 (515)
+.++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+
T Consensus 23 l~~~~~~~~~--~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~---------~~~ 91 (224)
T cd03220 23 LGILGRKGEV--GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL---------LGL 91 (224)
T ss_pred hhhhhhhhhc--CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh---------hcc
Confidence 7889998876 66789999999999999999999999999999999999999999999999987531 111
Q ss_pred CCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEe
Q psy10236 120 QSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLD 199 (515)
Q Consensus 120 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLD 199 (515)
...+.+.+||.||+.+....+.. .....++++.++++.+||.+..++.+++||||||||++|||+|+.+|+++|||
T Consensus 92 ~~~~~~~~tv~enl~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 167 (224)
T cd03220 92 GGGFNPELTGRENIYLNGRLLGL----SRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID 167 (224)
T ss_pred cccCCCCCcHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 23456789999999886543321 12334456788999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 200 CPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 200 EPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
|||+|||+.++..+.+.|+++++++ +|||+++|++ .++.++||++++|++|++++.|
T Consensus 168 EP~~gLD~~~~~~~~~~l~~~~~~~------~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 168 EVLAVGDAAFQEKCQRRLRELLKQG------KTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999997665 7999999985 4688899999999999998765
No 231
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-42 Score=371.07 Aligned_cols=217 Identities=15% Similarity=0.211 Sum_probs=187.4
Q ss_pred EEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hhhccceEEE
Q psy10236 42 VRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NALKRRLVYV 117 (515)
Q Consensus 42 v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~~~~~i~yv 117 (515)
++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|+
T Consensus 1 ~~nl~~~~--~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSF--PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEe--CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 36888877 45679999999999999999999999999999999999999999999999998742 2345679999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|+..+++.+||.||+.+........ ........++++++++.+|+.+..++++++|||||||||+|||||+.+|++||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lll 157 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGM-FVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVI 157 (491)
T ss_pred ecccccccCCCHHHHhhccccccccc-ccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99998899999999998753211100 00122334578899999999988999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
|||||+|||+.++..+.+.|++++++| +|||+++|++ .++..+||++++|++|+++..|++++.
T Consensus 158 LDEPt~~LD~~~~~~l~~~l~~l~~~g------~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 158 MDEPTSSLTEKEVNHLFTIIRKLKERG------CGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCC------CEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 999999999999999999999998766 7999999985 578899999999999999999987765
No 232
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-42 Score=372.35 Aligned_cols=225 Identities=18% Similarity=0.252 Sum_probs=189.9
Q ss_pred cCeEEEEeeEEeCCC-CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-CCeeEEEECCeeCCh----hhh
Q psy10236 37 FPHLQVRGLEVPPSS-KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND-AKAFQVILNGHSIPL----NAL 110 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~-~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-~~~G~I~~~G~~~~~----~~~ 110 (515)
.++|+++|+++.|.. +++.+|+|+||++++||++||+||||||||||+|+|+|+++ |++|+|.++|+++.. ...
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336 (506)
T ss_pred CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 457999999987732 24569999999999999999999999999999999999998 599999999988742 224
Q ss_pred ccceEEEecCC---CCCCCCCHHHHHHHHhhcCCCC-CCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHH
Q psy10236 111 KRRLVYVRSQS---FLSPELNVAQTLTFYSHLRRPP-KHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSI 185 (515)
Q Consensus 111 ~~~i~yv~q~~---~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~I 185 (515)
++.++|++|+. .+++.+||.||+.+........ ........+++++++++.+|+. +..++++++|||||||||+|
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHH
Confidence 56799999985 4788999999998753211100 0001223446788999999996 57899999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCc
Q psy10236 186 ACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKR 265 (515)
Q Consensus 186 A~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~ 265 (515)
||||+.+|++|||||||+|||+.++..+.++|++++++| +|||+++|+. +++.++|||+++|++|+++..|++
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g------~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~~~ 489 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQG------VAIIVISSEL-PEVLGLSDRVLVMHEGKLKGDLIN 489 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCC------CEEEEECCCH-HHHHHhCCEEEEEECCEEEEEecc
Confidence 999999999999999999999999999999999998766 8999999985 578999999999999999999987
Q ss_pred cch
Q psy10236 266 RDM 268 (515)
Q Consensus 266 ~~~ 268 (515)
+++
T Consensus 490 ~~~ 492 (506)
T PRK13549 490 HNL 492 (506)
T ss_pred ccC
Confidence 764
No 233
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-41 Score=324.55 Aligned_cols=185 Identities=31% Similarity=0.491 Sum_probs=164.0
Q ss_pred eEEEEeeEEeCCCC--CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC--CCCeeEEEECCeeCChhhhccce
Q psy10236 39 HLQVRGLEVPPSSK--NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN--DAKAFQVILNGHSIPLNALKRRL 114 (515)
Q Consensus 39 ~L~v~~l~~~~~~~--~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~--~~~~G~I~~~G~~~~~~~~~~~i 114 (515)
.|+++|+++.|..+ ++.+|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++. ...++.+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i 81 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRST 81 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhce
Confidence 58999999988421 257999999999999999999999999999999999986 489999999999875 4456789
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
+|++|++.+++.+|++||+.+.... + +||||||||++|||||+.+|+
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~--------------------~-------------~LSgGe~qrv~la~al~~~p~ 128 (192)
T cd03232 82 GYVEQQDVHSPNLTVREALRFSALL--------------------R-------------GLSVEQRKRLTIGVELAAKPS 128 (192)
T ss_pred EEecccCccccCCcHHHHHHHHHHH--------------------h-------------cCCHHHhHHHHHHHHHhcCCc
Confidence 9999999899999999999864210 0 799999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC-CeEEEec
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG-GRTMYSG 263 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~-G~iv~~G 263 (515)
+++|||||+|||+.++..+.+.|++++++| +|+|+++|++..++.+.||++++|++ |++++.|
T Consensus 129 vlllDEP~~~LD~~~~~~l~~~l~~~~~~~------~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 129 ILFLDEPTSGLDSQAAYNIVRFLKKLADSG------QAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHcC------CEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999998655 89999999875357889999999998 9999865
No 234
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.1e-41 Score=334.65 Aligned_cols=221 Identities=19% Similarity=0.201 Sum_probs=180.8
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC--CCCeeEEEECCeeCCh---hh-hcc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN--DAKAFQVILNGHSIPL---NA-LKR 112 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~--~~~~G~I~~~G~~~~~---~~-~~~ 112 (515)
+++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++.. .. .++
T Consensus 1 ~i~~~nl~~~~--~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 1 MLSIKDLHVSV--EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred CeEEEEEEEEe--CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 48899999987 3567999999999999999999999999999999999995 6999999999987632 12 235
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhh-cCCCCCC--CchhhHHHHHHHHHHHcCCc-ccccCccc-CCChHHHHHHHHHH
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSH-LRRPPKH--SIKVTTSEQMGLLIEELGLT-QVLSTRVG-RLTTSELKRLSIAC 187 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~-~~~~~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~v~-~LSGGerqRv~IA~ 187 (515)
.++|++|++.+++.+|+.+++.+... ....... .......+.++++++.+++. +..++.+. +|||||||||+|||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar 158 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 158 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence 69999999988888887777654321 1110000 01112345678899999995 56677775 79999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhh-ccEEEEEeCCeEEEecCcc
Q psy10236 188 CLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTM-ISRVLLVSGGRTMYSGKRR 266 (515)
Q Consensus 188 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~-~Drv~vL~~G~iv~~G~~~ 266 (515)
||+.+|++|+|||||+|||+.++..+.+.|+++++++ +|||+++|++. .+... ||++++|++|++++.|+++
T Consensus 159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~------~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGK------RSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC------CEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCHH
Confidence 9999999999999999999999999999999998765 79999999854 56665 8999999999999999887
Q ss_pred ch
Q psy10236 267 DM 268 (515)
Q Consensus 267 ~~ 268 (515)
.+
T Consensus 232 ~~ 233 (248)
T PRK09580 232 LV 233 (248)
T ss_pred HH
Confidence 54
No 235
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-42 Score=333.98 Aligned_cols=214 Identities=20% Similarity=0.313 Sum_probs=175.2
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i~ 115 (515)
.|+++|++++|. +.+.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++. ....++.++
T Consensus 2 ~l~~~~l~~~~~-~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYD-EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecC-CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 488999999873 2356999999999999999999999999999999999999999999999998873 234567899
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHH-----HHHHHHHHc--CCcccccCcccCCChHHHHHHHHHHH
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSE-----QMGLLIEEL--GLTQVLSTRVGRLTTSELKRLSIACC 188 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~v~~LSGGerqRv~IA~a 188 (515)
|++|+..+++. |+.||+.+..... ......+ .+.+.++.+ |+....++.+.+|||||||||+||++
T Consensus 81 ~~~q~~~~~~~-tv~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~a 153 (229)
T cd03254 81 VVLQDTFLFSG-TIMENIRLGRPNA------TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARA 153 (229)
T ss_pred EecCCchhhhh-HHHHHHhccCCCC------CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHH
Confidence 99999887775 9999998753211 0111111 123344444 55555677789999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
|+.+|+++||||||+|||+.++..+.+.|++++ ++ +|||+++|++. ++ ..||++++|++|++++.|+.+++
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~------~tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~~~~~~~ 224 (229)
T cd03254 154 MLRDPKILILDEATSNIDTETEKLIQEALEKLM-KG------RTSIIIAHRLS-TI-KNADKILVLDDGKIIEEGTHDEL 224 (229)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CC------CEEEEEecCHH-HH-hhCCEEEEEeCCeEEEeCCHHHH
Confidence 999999999999999999999999999999985 35 79999999864 45 45999999999999998887655
Q ss_pred H
Q psy10236 269 L 269 (515)
Q Consensus 269 ~ 269 (515)
.
T Consensus 225 ~ 225 (229)
T cd03254 225 L 225 (229)
T ss_pred H
Confidence 4
No 236
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-41 Score=343.86 Aligned_cols=222 Identities=19% Similarity=0.247 Sum_probs=185.0
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-----CCeeEEEECCeeCCh----
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND-----AKAFQVILNGHSIPL---- 107 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-----~~~G~I~~~G~~~~~---- 107 (515)
.++|+++|+++.| +++.+|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 43 ~~~l~i~nl~~~~--~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYY--GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEe--CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 4579999999987 45679999999999999999999999999999999999986 689999999988742
Q ss_pred -hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCC---------CCCchhhHHHHHHHHHHHcCCc----ccccCccc
Q psy10236 108 -NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPP---------KHSIKVTTSEQMGLLIEELGLT----QVLSTRVG 173 (515)
Q Consensus 108 -~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~---------~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~ 173 (515)
...++.++|++|+..+++ .||+||+.+........ .........+++.++++.+++. +..++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 199 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL 199 (305)
T ss_pred HHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence 235678999999988887 49999999764321100 0000122345678899999884 45688899
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEE-E
Q psy10236 174 RLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRV-L 252 (515)
Q Consensus 174 ~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv-~ 252 (515)
+|||||||||+||+||+++|+||||||||+|||+.++..+.+.|+++++ + +|||+++|++ ..+.++||++ +
T Consensus 200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~------~tiiivtH~~-~~i~~~~d~i~~ 271 (305)
T PRK14264 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-E------YTVVVVTHNM-QQAARISDQTAV 271 (305)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C------CEEEEEEcCH-HHHHHhcCEEEE
Confidence 9999999999999999999999999999999999999999999999975 3 6899999985 4678899997 5
Q ss_pred EEeCCeEEEecCccchH
Q psy10236 253 LVSGGRTMYSGKRRDML 269 (515)
Q Consensus 253 vL~~G~iv~~G~~~~~~ 269 (515)
+|++|+++..|+++++.
T Consensus 272 ~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 272 FLTGGELVEYDDTDKIF 288 (305)
T ss_pred EecCCEEEEeCCHHHHH
Confidence 67999999999887653
No 237
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.1e-42 Score=381.15 Aligned_cols=215 Identities=21% Similarity=0.326 Sum_probs=182.4
Q ss_pred CcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhcc
Q psy10236 36 FFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKR 112 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~ 112 (515)
....++++|++++|...+..+|+|+|++|++||.+||+|+||||||||+|+|+|+++|++|+|++||.++. ...+|+
T Consensus 468 ~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 468 LQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred cCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHh
Confidence 34479999999999766567999999999999999999999999999999999999999999999999974 457899
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHc-------CCcccccCcccC----CChHHHH
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEEL-------GLTQVLSTRVGR----LTTSELK 181 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~v~~----LSGGerq 181 (515)
.+|||+|++.+|.. |++||+.+... .. ..+++.+.++.- .+..-.++.+++ |||||||
T Consensus 548 ~ig~V~Q~~~Lf~g-SI~eNi~l~~p----~~------~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQ 616 (709)
T COG2274 548 QVGYVLQDPFLFSG-SIRENIALGNP----EA------TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQ 616 (709)
T ss_pred heeEEcccchhhcC-cHHHHHhcCCC----CC------CHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHH
Confidence 99999999988865 99999987531 11 112222233332 334445666654 9999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEE
Q psy10236 182 RLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMY 261 (515)
Q Consensus 182 Rv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~ 261 (515)
|++|||||+++|+||+||||||+||+.+.+.+.+.|.++.. ++|+|+++|.+ ...+.||||+||++|+++.
T Consensus 617 rlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-------~~T~I~IaHRl--~ti~~adrIiVl~~Gkiv~ 687 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-------GRTVIIIAHRL--STIRSADRIIVLDQGKIVE 687 (709)
T ss_pred HHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-------CCeEEEEEccc--hHhhhccEEEEccCCceec
Confidence 99999999999999999999999999999999999999865 37888888876 4788999999999999999
Q ss_pred ecCccchHH
Q psy10236 262 SGKRRDMLP 270 (515)
Q Consensus 262 ~G~~~~~~~ 270 (515)
+|+.+++..
T Consensus 688 ~gs~~ell~ 696 (709)
T COG2274 688 QGSHEELLA 696 (709)
T ss_pred cCCHHHHHH
Confidence 999999875
No 238
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-41 Score=337.34 Aligned_cols=219 Identities=16% Similarity=0.178 Sum_probs=184.9
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-----CeeEEEECCeeCC-----
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-----KAFQVILNGHSIP----- 106 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-----~~G~I~~~G~~~~----- 106 (515)
.++|+++|++++| +++.+|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~--~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 14 QQKSEVNKLNFYY--GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CceEEEEEEEEEE--CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 4579999999987 356799999999999999999999999999999999999874 7999999997653
Q ss_pred --hhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc----ccccCcccCCChHHH
Q psy10236 107 --LNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT----QVLSTRVGRLTTSEL 180 (515)
Q Consensus 107 --~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSGGer 180 (515)
...+++.++|++|++.+++. |+.||+.+........ .....++++.++++.+++. +..++.+.+||||||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 167 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVK---RRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQ 167 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCC---hHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHH
Confidence 12356789999999988886 9999998764332211 1122345677788888773 456788999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEE
Q psy10236 181 KRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTM 260 (515)
Q Consensus 181 qRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv 260 (515)
||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ + +|||+++|+. +++.++|||+++|++|+++
T Consensus 168 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~------~tiiivth~~-~~~~~~~d~i~~l~~G~i~ 239 (265)
T PRK14252 168 QRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-K------VTILIVTHNM-QQAARVSDYTAYMYMGELI 239 (265)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-C------CEEEEEecCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999965 3 6889999985 5788899999999999999
Q ss_pred EecCccchH
Q psy10236 261 YSGKRRDML 269 (515)
Q Consensus 261 ~~G~~~~~~ 269 (515)
..|+.+++.
T Consensus 240 ~~g~~~~~~ 248 (265)
T PRK14252 240 EFGATDTIF 248 (265)
T ss_pred EeCCHHHHH
Confidence 999887653
No 239
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.2e-41 Score=370.78 Aligned_cols=219 Identities=18% Similarity=0.215 Sum_probs=187.6
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC--CCCeeEEEEC----------------
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN--DAKAFQVILN---------------- 101 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~--~~~~G~I~~~---------------- 101 (515)
|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~--~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKF--DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEE--CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 5789999987 4567999999999999999999999999999999999997 7999999997
Q ss_pred -------CeeCC----------h---hhhccceEEEecC-CCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHH
Q psy10236 102 -------GHSIP----------L---NALKRRLVYVRSQ-SFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIE 160 (515)
Q Consensus 102 -------G~~~~----------~---~~~~~~i~yv~q~-~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~ 160 (515)
|.++. . ...++.++|++|+ +.+++.+||.||+.+....... ...+.++++.++++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~----~~~~~~~~~~~~l~ 154 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGY----EGKEAVGRAVDLIE 154 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCC----CHHHHHHHHHHHHH
Confidence 22210 0 1235679999997 6788899999999886543321 12334567889999
Q ss_pred HcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCC
Q psy10236 161 ELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQP 239 (515)
Q Consensus 161 ~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~ 239 (515)
.+||++..++++++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ | +|||+++|+
T Consensus 155 ~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g------~tviivtHd 228 (520)
T TIGR03269 155 MVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG------ISMVLTSHW 228 (520)
T ss_pred HcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC------cEEEEEeCC
Confidence 999998899999999999999999999999999999999999999999999999999999764 4 899999998
Q ss_pred CchHHHhhccEEEEEeCCeEEEecCccchHHH
Q psy10236 240 PTYEIFTMISRVLLVSGGRTMYSGKRRDMLPY 271 (515)
Q Consensus 240 ~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~~ 271 (515)
+ ..+.++||++++|++|++++.|+++++...
T Consensus 229 ~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 229 P-EVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred H-HHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 5 467889999999999999999988776554
No 240
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=9.7e-42 Score=372.27 Aligned_cols=224 Identities=18% Similarity=0.262 Sum_probs=190.2
Q ss_pred cCeEEEEeeEEeCCC---------CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh
Q psy10236 37 FPHLQVRGLEVPPSS---------KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL 107 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~---------~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~ 107 (515)
.++|+++|+++.|.. +++.+|+|+||++++||++||+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccc
Confidence 457999999998742 13579999999999999999999999999999999999985 89999999988732
Q ss_pred ---h---hhccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChH
Q psy10236 108 ---N---ALKRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTS 178 (515)
Q Consensus 108 ---~---~~~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGG 178 (515)
. .+++.++|++|+. .+++.+||.||+.+....+... ......++++.++++.+||. +..++++++||||
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 429 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPT--LSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGG 429 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcccc--CChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHH
Confidence 1 2356799999986 4788999999998865332110 01223456788999999997 5789999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCe
Q psy10236 179 ELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258 (515)
Q Consensus 179 erqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~ 258 (515)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++. ++|||+++|+. .++.++||++++|++|+
T Consensus 430 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-----~~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 430 QRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKH-----QLAYLFISHDL-HVVRALCHQVIVLRQGE 503 (529)
T ss_pred HHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhh-----CCEEEEEeCCH-HHHHHhcCeEEEEECCE
Confidence 9999999999999999999999999999999999999999998752 27999999985 57889999999999999
Q ss_pred EEEecCccchH
Q psy10236 259 TMYSGKRRDML 269 (515)
Q Consensus 259 iv~~G~~~~~~ 269 (515)
++..|+++++.
T Consensus 504 i~~~~~~~~~~ 514 (529)
T PRK15134 504 VVEQGDCERVF 514 (529)
T ss_pred EEEEcCHHHHh
Confidence 99999887764
No 241
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.3e-41 Score=336.95 Aligned_cols=203 Identities=18% Similarity=0.267 Sum_probs=176.8
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYV 117 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv 117 (515)
++|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| +..++|+
T Consensus 3 ~~l~~~~l~~~~--~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~--------~~~i~~v 72 (251)
T PRK09544 3 SLVSLENVSVSF--GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG--------KLRIGYV 72 (251)
T ss_pred cEEEEeceEEEE--CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC--------ccCEEEe
Confidence 479999999987 456799999999999999999999999999999999999999999999987 2369999
Q ss_pred ecCCCCCCCC--CHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCE
Q psy10236 118 RSQSFLSPEL--NVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADI 195 (515)
Q Consensus 118 ~q~~~~~~~l--Tv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~l 195 (515)
+|+..+++.+ |+.+++.+.. . ...+++.++++.+||.+..++++.+|||||||||+||+||+.+|++
T Consensus 73 ~q~~~~~~~l~~~~~~~~~~~~-----~------~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l 141 (251)
T PRK09544 73 PQKLYLDTTLPLTVNRFLRLRP-----G------TKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQL 141 (251)
T ss_pred ccccccccccChhHHHHHhccc-----c------ccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9998777764 6777664311 0 0124567899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 196 LLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 196 LlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+||||||+|||+.++..+.+.|++++++ | +|||+++|++ +++.++||++++|++ +++..|+++++.
T Consensus 142 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g------~tiiivsH~~-~~i~~~~d~i~~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 142 LVLDEPTQGVDVNGQVALYDLIDQLRRELD------CAVLMVSHDL-HLVMAKTDEVLCLNH-HICCSGTPEVVS 208 (251)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHhcC------CEEEEEecCH-HHHHHhCCEEEEECC-ceEeeCCHHHHh
Confidence 9999999999999999999999999765 4 7999999985 478899999999964 799999887653
No 242
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-41 Score=326.95 Aligned_cols=199 Identities=22% Similarity=0.337 Sum_probs=173.4
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEe
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVR 118 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~ 118 (515)
+++++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.....++.++|++
T Consensus 2 ~l~~~~l~~~~--~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (207)
T PRK13539 2 MLEGEDLACVR--GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLG 79 (207)
T ss_pred EEEEEeEEEEE--CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEec
Confidence 68999999987 4567999999999999999999999999999999999999999999999998764222667899999
Q ss_pred cCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEE
Q psy10236 119 SQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlL 198 (515)
|++.+++.+|+.||+.+....+.. ..+++.++++.+||.+..++++++||||||||++||++|+.+|+++||
T Consensus 80 ~~~~~~~~~tv~~~l~~~~~~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 151 (207)
T PRK13539 80 HRNAMKPALTVAENLEFWAAFLGG--------EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWIL 151 (207)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCC--------cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 988888999999999876543211 123578899999998888999999999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC
Q psy10236 199 DCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG 256 (515)
Q Consensus 199 DEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~ 256 (515)
||||+|||+.++..+.+.|++++++| +|||+++|+.. ++.. |+++.+..
T Consensus 152 DEPt~~LD~~~~~~l~~~l~~~~~~~------~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 152 DEPTAALDAAAVALFAELIRAHLAQG------GIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHCC------CEEEEEeCCch-hhcc--CcEEeecC
Confidence 99999999999999999999987766 79999999863 4554 88877743
No 243
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.7e-41 Score=370.44 Aligned_cols=222 Identities=17% Similarity=0.270 Sum_probs=188.3
Q ss_pred CeEEEEeeEEeCCCC--CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-----CeeEEEECCeeCCh---
Q psy10236 38 PHLQVRGLEVPPSSK--NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-----KAFQVILNGHSIPL--- 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~--~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-----~~G~I~~~G~~~~~--- 107 (515)
++++++|++++|..+ .+.+|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 479999999988421 25799999999999999999999999999999999999986 79999999998732
Q ss_pred h---hhc-cceEEEecCCC--CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc---cccCcccCCChH
Q psy10236 108 N---ALK-RRLVYVRSQSF--LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ---VLSTRVGRLTTS 178 (515)
Q Consensus 108 ~---~~~-~~i~yv~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSGG 178 (515)
. ..+ +.++|++|+.. +++.+|+.+++.+....... .......++++++++.+||.+ ..++++++||||
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgG 160 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRG---MRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG 160 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHH
Confidence 1 122 57999999864 66778999998765432111 112344577899999999975 468999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCC
Q psy10236 179 ELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGG 257 (515)
Q Consensus 179 erqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G 257 (515)
|||||+|||||+.+|++|||||||+|||+.++..+.++|++++++ | +|||+++|++ .++..+||||++|++|
T Consensus 161 e~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g------~tvi~vtHd~-~~~~~~~dri~~l~~G 233 (529)
T PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELN------MGLLFITHNL-SIVRKLADRVAVMQNG 233 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcC------CeEEEEcCcH-HHHHHhcCEEEEEECC
Confidence 999999999999999999999999999999999999999999865 4 7999999985 4688899999999999
Q ss_pred eEEEecCccchH
Q psy10236 258 RTMYSGKRRDML 269 (515)
Q Consensus 258 ~iv~~G~~~~~~ 269 (515)
++++.|+++++.
T Consensus 234 ~i~~~g~~~~~~ 245 (529)
T PRK15134 234 RCVEQNRAATLF 245 (529)
T ss_pred EEEEeCCHHHHh
Confidence 999999887653
No 244
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=369.63 Aligned_cols=220 Identities=20% Similarity=0.289 Sum_probs=186.0
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hhhcc
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NALKR 112 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~~~~ 112 (515)
.++|+++|+++.+ + .+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++
T Consensus 263 ~~~l~~~~l~~~~--~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 338 (510)
T PRK09700 263 ETVFEVRNVTSRD--R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338 (510)
T ss_pred CcEEEEeCccccC--C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHC
Confidence 3589999999753 2 38999999999999999999999999999999999999999999999988742 23456
Q ss_pred ceEEEecC---CCCCCCCCHHHHHHHHhhcCC--CC---CCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHH
Q psy10236 113 RLVYVRSQ---SFLSPELNVAQTLTFYSHLRR--PP---KHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRL 183 (515)
Q Consensus 113 ~i~yv~q~---~~~~~~lTv~e~l~~~~~~~~--~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv 183 (515)
.++|++|+ ..+++.+||.||+.+....+. .. ........+++++++++.+||. +..++++++|||||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 418 (510)
T PRK09700 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKV 418 (510)
T ss_pred CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHH
Confidence 79999997 468899999999987532110 00 0001122335678999999997 789999999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||+|+.+|+||||||||+|||+.++..+.++|++++++| .|||+++|++ .++..+|||+++|++|+++..+
T Consensus 419 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g------~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~ 491 (510)
T PRK09700 419 LISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDG------KVILMVSSEL-PEIITVCDRIAVFCEGRLTQIL 491 (510)
T ss_pred HHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCC------CEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEe
Confidence 99999999999999999999999999999999999998765 7999999985 5788999999999999999888
Q ss_pred Cccc
Q psy10236 264 KRRD 267 (515)
Q Consensus 264 ~~~~ 267 (515)
+.++
T Consensus 492 ~~~~ 495 (510)
T PRK09700 492 TNRD 495 (510)
T ss_pred cCcc
Confidence 7633
No 245
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.1e-41 Score=330.90 Aligned_cols=205 Identities=18% Similarity=0.257 Sum_probs=171.3
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i~ 115 (515)
.++++|+++++..+++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++. ...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 37899999988533457999999999999999999999999999999999999999999999999873 234577899
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccc-----------ccCcccCCChHHHHHHH
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV-----------LSTRVGRLTTSELKRLS 184 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~v~~LSGGerqRv~ 184 (515)
|++|++.+++ .|+.||+.+... . ..+++.+.++.+++.+. .++.+.+||||||||++
T Consensus 82 ~~~q~~~l~~-~tv~enl~~~~~----~-------~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~ 149 (221)
T cd03244 82 IIPQDPVLFS-GTIRSNLDPFGE----Y-------SDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLC 149 (221)
T ss_pred EECCCCcccc-chHHHHhCcCCC----C-------CHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHH
Confidence 9999988765 599999864311 0 01234445555555443 35688899999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||+|+.+|+++||||||+|||+.++..+.+.|+++++ + +|||+++|++. ++. .||++++|++|++++.|+
T Consensus 150 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~------~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 150 LARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-D------CTVLTIAHRLD-TII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-C------CEEEEEeCCHH-HHh-hCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999854 3 68999999864 454 599999999999998875
No 246
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.8e-41 Score=324.30 Aligned_cols=195 Identities=24% Similarity=0.366 Sum_probs=169.5
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccceEEE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRLVYV 117 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i~yv 117 (515)
++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.++|+
T Consensus 1 l~~~~l~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (198)
T TIGR01189 1 LAARNLACSR--GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYL 78 (198)
T ss_pred CEEEEEEEEE--CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEe
Confidence 4789999987 45789999999999999999999999999999999999999999999999998632 2345789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|+..+++.+|+.||+.+...... . .++++.++++.+|+.+..++++++|||||||||+||||++.+|++++
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~-------~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 150 (198)
T TIGR01189 79 GHLPGLKPELSALENLHFWAAIHG-------G-AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWI 150 (198)
T ss_pred ccCcccccCCcHHHHHHHHHHHcC-------C-cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 999888889999999987654321 1 13457789999999998999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEE
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLL 253 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~v 253 (515)
|||||+|||+.++..+.+.|++++++| +|+|+++|++. .-.|++++.
T Consensus 151 lDEPt~~LD~~~~~~l~~~l~~~~~~~------~tii~~sH~~~---~~~~~~~~~ 197 (198)
T TIGR01189 151 LDEPTTALDKAGVALLAGLLRAHLARG------GIVLLTTHQDL---GLVEARELR 197 (198)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCC------CEEEEEEcccc---cccceEEee
Confidence 999999999999999999999997766 79999999864 234577664
No 247
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-43 Score=321.31 Aligned_cols=222 Identities=15% Similarity=0.264 Sum_probs=200.0
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i~ 115 (515)
|++++|++++| +++.+|+++|+++++|.+++++|||||||||||.+++.+.+.++|+|.++|.++. .+.+.+.++
T Consensus 1 MI~i~nv~K~y--~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 1 MITIENVSKSY--GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred CeeehhhhHhh--CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 58899999987 7889999999999999999999999999999999999999999999999999984 356788899
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCE
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADI 195 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~l 195 (515)
.+.|+......+||+|-+.|+..-+. ......+.+..+++.++.++|++..++...+||||||||.-||+.++++.+.
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYS--qGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdy 156 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYS--QGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDY 156 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCccc--CCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcE
Confidence 99999999999999999998742221 1112355677899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 196 LLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 196 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
++||||.++||-..+.++++.|++++++- ++||+++.|+.. .+..++|+|+-|++|+++..|+++++..
T Consensus 157 vlLDEPLNNLDmkHsv~iMk~Lrrla~el-----~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 157 VLLDEPLNNLDMKHSVQIMKILRRLADEL-----GKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred EEecCcccccchHHHHHHHHHHHHHHHHh-----CCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 99999999999999999999999999873 499999999864 6888999999999999999999999863
No 248
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.4e-41 Score=340.52 Aligned_cols=210 Identities=17% Similarity=0.269 Sum_probs=181.9
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~ 115 (515)
.++++|++++|..++..+|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|.++|.++.. ..+++.++
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 488999999985445679999999999999999999999999999999999998 78999999998742 35678899
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccC-----------CChHHHHHHH
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGR-----------LTTSELKRLS 184 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~-----------LSGGerqRv~ 184 (515)
|++|++.+++. |+++|+..... . ..+++.+.++.+||.+..++.++. ||||||||++
T Consensus 81 ~v~q~~~lf~~-tv~~nl~~~~~----~-------~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~ 148 (275)
T cd03289 81 VIPQKVFIFSG-TFRKNLDPYGK----W-------SDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMC 148 (275)
T ss_pred EECCCcccchh-hHHHHhhhccC----C-------CHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence 99999999875 99999964211 0 124567788899998888888876 9999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||||+.+|+||||||||++||+.+...+.+.|+++.+ + +|||+++|+. ..+. .||||++|++|++++.|+
T Consensus 149 LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~-~------~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~ 219 (275)
T cd03289 149 LARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFA-D------CTVILSEHRI-EAML-ECQRFLVIEENKVRQYDS 219 (275)
T ss_pred HHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-C------CEEEEEECCH-HHHH-hCCEEEEecCCeEeecCC
Confidence 99999999999999999999999999999999998743 4 7999999986 4554 599999999999999999
Q ss_pred ccchHH
Q psy10236 265 RRDMLP 270 (515)
Q Consensus 265 ~~~~~~ 270 (515)
++++..
T Consensus 220 ~~~l~~ 225 (275)
T cd03289 220 IQKLLN 225 (275)
T ss_pred HHHHhh
Confidence 998763
No 249
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-41 Score=334.08 Aligned_cols=213 Identities=20% Similarity=0.304 Sum_probs=174.6
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccceEE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRLVY 116 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i~y 116 (515)
++++|++++|. +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++. ...+++.++|
T Consensus 1 l~~~~l~~~~~-~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYD-PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeC-CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 46899999873 2456999999999999999999999999999999999999999999999998873 2345678999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHH-----HHHHHHHHc--CCcccccCcccCCChHHHHHHHHHHHH
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSE-----QMGLLIEEL--GLTQVLSTRVGRLTTSELKRLSIACCL 189 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~v~~LSGGerqRv~IA~aL 189 (515)
++|+..+++ .|+.||+.+.... . ......+ .+.+.++.+ ++....++++.+|||||||||+|||||
T Consensus 80 ~~q~~~~~~-~tv~~nl~~~~~~-~-----~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL 152 (236)
T cd03253 80 VPQDTVLFN-DTIGYNIRYGRPD-A-----TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAI 152 (236)
T ss_pred ECCCChhhc-chHHHHHhhcCCC-C-----CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 999988775 6999999875321 0 0111111 123344444 555566778889999999999999999
Q ss_pred HhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 190 MSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 190 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+.+|+++||||||+|||+.++..+.+.|+++++ | +|||+++|++. ++. .||++++|++|+++..|+.+++.
T Consensus 153 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~------~tiii~sh~~~-~~~-~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 153 LKNPPILLLDEATSALDTHTEREIQAALRDVSK-G------RTTIVIAHRLS-TIV-NADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-C------CEEEEEcCCHH-HHH-hCCEEEEEECCEEEeeCCHHHHh
Confidence 999999999999999999999999999999875 6 79999999864 454 59999999999999988876553
No 250
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2e-41 Score=349.31 Aligned_cols=217 Identities=22% Similarity=0.310 Sum_probs=197.3
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC----hhhhccc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP----LNALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~----~~~~~~~ 113 (515)
+.++++|++|.| ++..+++||||+|++||++||+|.||||||||+++|.|.++|++|+|+++|+++. .+..+..
T Consensus 3 ~~l~~~~itK~f--~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 3 PALEMRGITKRF--PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred ceEEEeccEEEc--CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 468999999988 4788999999999999999999999999999999999999999999999999873 3467889
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
||+|.|+..++|++||.||+.++..-.... .......+++++++.+.+||+-..+.++++||-||||||.|-++|.++|
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~-~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a 159 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGG-LIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGA 159 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCcccccc-ccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCC
Confidence 999999999999999999999876432111 1234567788999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
++|||||||+-|-|...+++++.|++++++| +|||+++|- ..|+.++|||+.||++|+++...+
T Consensus 160 ~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G------~tIi~ITHK-L~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 160 RLLILDEPTAVLTPQEADELFEILRRLAAEG------KTIIFITHK-LKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCC------CEEEEEecc-HHHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999987 899999998 569999999999999999988766
No 251
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-41 Score=315.93 Aligned_cols=171 Identities=23% Similarity=0.351 Sum_probs=155.3
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccceEEE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRLVYV 117 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i~yv 117 (515)
++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|+
T Consensus 1 l~~~~l~~~~--~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (173)
T cd03230 1 IEVRNLSKRY--GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYL 78 (173)
T ss_pred CEEEEEEEEE--CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEE
Confidence 4689999987 34579999999999999999999999999999999999999999999999998743 3456789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|++.+++.+|+.||+. ||||||||++|||||+.+|++++
T Consensus 79 ~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~ill 118 (173)
T cd03230 79 PEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELLI 118 (173)
T ss_pred ecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEEE
Confidence 99998899899999863 99999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
|||||+|||+.++..+.+.|++++++| .|+|+++|++ .++.++||++++|++|++
T Consensus 119 lDEPt~~LD~~~~~~l~~~l~~~~~~g------~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 119 LDEPTSGLDPESRREFWELLRELKKEG------KTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHCC------CEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999998765 7899999985 467889999999999974
No 252
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=4.9e-41 Score=327.14 Aligned_cols=205 Identities=18% Similarity=0.208 Sum_probs=172.7
Q ss_pred eEEEEeeEEeCCC----C-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEEC--Ce--eCC---
Q psy10236 39 HLQVRGLEVPPSS----K-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILN--GH--SIP--- 106 (515)
Q Consensus 39 ~L~v~~l~~~~~~----~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~--G~--~~~--- 106 (515)
+|+++|+++.|.. + ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++ |+ ++.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 4889999998842 1 2479999999999999999999999999999999999999999999998 43 332
Q ss_pred hhh----hccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-cccCcccCCChHHHH
Q psy10236 107 LNA----LKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-VLSTRVGRLTTSELK 181 (515)
Q Consensus 107 ~~~----~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSGGerq 181 (515)
... .++.++|++|+..+++.+||.||+.+....... ......+++.++++.+|+.+ ..++++.+|||||||
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 156 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGV----PREAARARARELLARLNIPERLWHLPPATFSGGEQQ 156 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHH
Confidence 111 245799999999999999999999875432221 12234457788999999976 458899999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE
Q psy10236 182 RLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV 254 (515)
Q Consensus 182 Rv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL 254 (515)
|++||+||+.+|++++|||||+|||+.++..+.+.|++++++| .|||+++|++ ..+.++||+++.+
T Consensus 157 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g------~tii~vsH~~-~~~~~~~d~i~~~ 222 (224)
T TIGR02324 157 RVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARG------AALIGIFHDE-EVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcC------CEEEEEeCCH-HHHHHhcceeEec
Confidence 9999999999999999999999999999999999999997665 7999999984 4577899999876
No 253
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.8e-41 Score=322.58 Aligned_cols=195 Identities=18% Similarity=0.291 Sum_probs=170.1
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccceEE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRLVY 116 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i~y 116 (515)
+|+++|+++++ +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 1 ml~~~~l~~~~--~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~ 78 (200)
T PRK13540 1 MLDVIELDFDY--HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF 78 (200)
T ss_pred CEEEEEEEEEe--CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEE
Confidence 48899999987 45679999999999999999999999999999999999999999999999988742 345678999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
++|+..+++.+||.||+.+..... . ....++++++.+++.+..++++++||||||||++||||++.+|++|
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~--~-------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~l 149 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFS--P-------GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLW 149 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcC--c-------chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 999988889999999998764211 0 1246788999999988889999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEE
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVL 252 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~ 252 (515)
||||||+|||+.++..+.+.|+++++++ .|||+++|++ +....||.-.
T Consensus 150 ilDEP~~~LD~~~~~~l~~~l~~~~~~~------~tiii~sh~~--~~~~~~d~~~ 197 (200)
T PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRAKG------GAVLLTSHQD--LPLNKADYEE 197 (200)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHcC------CEEEEEeCCc--hhccccchhh
Confidence 9999999999999999999999987665 7999999986 3456677543
No 254
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.9e-41 Score=365.22 Aligned_cols=223 Identities=19% Similarity=0.255 Sum_probs=187.8
Q ss_pred cCeEEEEeeEEeCCC-CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-CeeEEEECCeeCCh----hhh
Q psy10236 37 FPHLQVRGLEVPPSS-KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-KAFQVILNGHSIPL----NAL 110 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~-~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-~~G~I~~~G~~~~~----~~~ 110 (515)
.++|+++|++++|.. +++.+|+|+||++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++.. ...
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAI 334 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 347999999987632 235699999999999999999999999999999999999985 89999999998742 234
Q ss_pred ccceEEEecCC---CCCCCCCHHHHHHHHhh--cCCCCCCCchhhHHHHHHHHHHHcCCcc-cccCcccCCChHHHHHHH
Q psy10236 111 KRRLVYVRSQS---FLSPELNVAQTLTFYSH--LRRPPKHSIKVTTSEQMGLLIEELGLTQ-VLSTRVGRLTTSELKRLS 184 (515)
Q Consensus 111 ~~~i~yv~q~~---~~~~~lTv~e~l~~~~~--~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSGGerqRv~ 184 (515)
+++++|++|+. .+++.+||.||+.+... ..... .......+++++++++.+|+.+ ..++++++|||||||||+
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 413 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKM-RIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAV 413 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCC-cCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHH
Confidence 67899999985 58899999999987531 11100 0011233466889999999974 689999999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++| .|||+++|+. .++.++||++++|++|+++..++
T Consensus 414 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g------~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 414 LAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG------VAIIVVSSEL-AEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCC------CEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEc
Confidence 9999999999999999999999999999999999998766 7999999985 57899999999999999998776
Q ss_pred ccc
Q psy10236 265 RRD 267 (515)
Q Consensus 265 ~~~ 267 (515)
.++
T Consensus 487 ~~~ 489 (500)
T TIGR02633 487 NHA 489 (500)
T ss_pred ccc
Confidence 543
No 255
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.3e-41 Score=331.56 Aligned_cols=213 Identities=18% Similarity=0.284 Sum_probs=174.9
Q ss_pred CcCeEEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhc
Q psy10236 36 FFPHLQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALK 111 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~ 111 (515)
..++++++|+++.|... ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...+
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 34689999999988422 2469999999999999999999999999999999999999999999999987632 2356
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHc--CCcccccCcccCCChHHHHHHHHHHHH
Q psy10236 112 RRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEEL--GLTQVLSTRVGRLTTSELKRLSIACCL 189 (515)
Q Consensus 112 ~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~LSGGerqRv~IA~aL 189 (515)
+.++|++|+..+++ .|+.||+.+...... .........+..++++++.+ |+.+..++++.+|||||||||+||++|
T Consensus 88 ~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral 165 (226)
T cd03248 88 SKVSLVGQEPVLFA-RSLQDNIAYGLQSCS-FECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL 165 (226)
T ss_pred hhEEEEecccHHHh-hhHHHHhccccCCCC-HHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 77999999988776 599999976432110 00000001112356788888 888888999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 190 MSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 190 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
+.+|+++||||||+|||+.++..+.+.|+++++ + +|+|+++|++. ++. .||++++|++|++
T Consensus 166 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~------~tii~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYDWPE-R------RTVLVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-C------CEEEEEECCHH-HHH-hCCEEEEecCCcC
Confidence 999999999999999999999999999999864 3 68999999864 554 5999999999974
No 256
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.3e-41 Score=366.22 Aligned_cols=210 Identities=20% Similarity=0.201 Sum_probs=182.1
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~ 115 (515)
+|+++|++++| +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ...++.++
T Consensus 3 ~l~~~~l~~~~--~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRL--SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEc--CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 69999999987 45569999999999999999999999999999999999999999999999976532 23456699
Q ss_pred EEecCCCC--C------CCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHH
Q psy10236 116 YVRSQSFL--S------PELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIAC 187 (515)
Q Consensus 116 yv~q~~~~--~------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~ 187 (515)
|++|++.. + ..+|+.|++.+. ...+++++++++.+||.+..++++++|||||||||+||+
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE------------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccc------------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHH
Confidence 99997542 1 146788776431 123456788999999998899999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccc
Q psy10236 188 CLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRD 267 (515)
Q Consensus 188 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~ 267 (515)
||+.+|++|||||||+|||+.++..+.+.|++++++| +|||+++|+. .++.++||++++|++|+++..|++++
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g------~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 221 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSG------ITLVLVLNRF-DEIPDFVQFAGVLADCTLAETGEREE 221 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcC------CeEEEEeCCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999998765 7999999985 57889999999999999999998776
Q ss_pred hH
Q psy10236 268 ML 269 (515)
Q Consensus 268 ~~ 269 (515)
+.
T Consensus 222 ~~ 223 (490)
T PRK10938 222 IL 223 (490)
T ss_pred Hh
Confidence 53
No 257
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-40 Score=331.29 Aligned_cols=211 Identities=13% Similarity=0.162 Sum_probs=180.5
Q ss_pred eEEEEeeEEeCCC------------------CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEE
Q psy10236 39 HLQVRGLEVPPSS------------------KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVIL 100 (515)
Q Consensus 39 ~L~v~~l~~~~~~------------------~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~ 100 (515)
.++++||++.|.. .++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 4788888775532 2346899999999999999999999999999999999999999999999
Q ss_pred CCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHH
Q psy10236 101 NGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSEL 180 (515)
Q Consensus 101 ~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGer 180 (515)
+|+ ++++.|...+.+.+|+.||+.+....... ......+.++.+++.+++.+..++.+++||||||
T Consensus 84 ~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~ 149 (264)
T PRK13546 84 NGE----------VSVIAISAGLSGQLTGIENIEFKMLCMGF----KRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMR 149 (264)
T ss_pred CCE----------EeEEecccCCCCCCcHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHH
Confidence 995 34666777777889999999875433221 1233445567888999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEE
Q psy10236 181 KRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTM 260 (515)
Q Consensus 181 qRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv 260 (515)
|||+||+||+.+|++|||||||+|||+.++..+.+.|++++++| +|||+++|+. .++.++||++++|++|+++
T Consensus 150 qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g------~tiIiisH~~-~~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 150 AKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQN------KTIFFVSHNL-GQVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCC------CEEEEEcCCH-HHHHHHcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999997665 7999999985 4688899999999999999
Q ss_pred EecCccchHH
Q psy10236 261 YSGKRRDMLP 270 (515)
Q Consensus 261 ~~G~~~~~~~ 270 (515)
..|+.+++.+
T Consensus 223 ~~g~~~~~~~ 232 (264)
T PRK13546 223 DYGELDDVLP 232 (264)
T ss_pred EeCCHHHHHH
Confidence 9999877653
No 258
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.3e-41 Score=316.88 Aligned_cols=173 Identities=28% Similarity=0.418 Sum_probs=156.0
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hhhccc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~~~~~ 113 (515)
++++++|++++| +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.
T Consensus 3 ~~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 3 PVLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred cEEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 479999999864 8999999999999999999999999999999999999999999999998742 234678
Q ss_pred eEEEecCC---CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH
Q psy10236 114 LVYVRSQS---FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM 190 (515)
Q Consensus 114 i~yv~q~~---~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~ 190 (515)
++|++|+. .+++.+|+.||+.+... ||||||||++|||||+
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHc
Confidence 99999984 57888999999876420 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 191 SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 191 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
.+|+++||||||+|||+.++..+.+.|+++++++ +|+|+++|++ .++.++||++++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~------~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAG------KAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCC------CEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999997655 7999999985 478899999999999974
No 259
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.5e-41 Score=373.68 Aligned_cols=209 Identities=19% Similarity=0.324 Sum_probs=176.1
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i~ 115 (515)
.++++|+++.+. +++++|+|+||+++|||.+||+||||||||||+++|+|++ |++|+|.+||.++. ...+++.++
T Consensus 349 ~i~~~~vsf~~~-~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~ 426 (588)
T PRK11174 349 TIEAEDLEILSP-DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLS 426 (588)
T ss_pred eEEEEeeEEecc-CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheE
Confidence 599999997553 4567999999999999999999999999999999999999 99999999999874 456889999
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-------ccccCccc----CCChHHHHHHH
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-------QVLSTRVG----RLTTSELKRLS 184 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~----~LSGGerqRv~ 184 (515)
||+|++.+|.. |++|||.++. +. ..++++.++++..++. +..|+.++ +||||||||++
T Consensus 427 ~v~Q~~~LF~~-TI~eNI~~g~----~~------~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRia 495 (588)
T PRK11174 427 WVGQNPQLPHG-TLRDNVLLGN----PD------ASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLA 495 (588)
T ss_pred EecCCCcCCCc-CHHHHhhcCC----CC------CCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHH
Confidence 99999999876 9999998852 11 1123344444444443 23455554 49999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||||+++|+|||||||||+||+.+...+.+.|+++.+ + +|+|+++|++ +..+.||+|++|++|++++.|+
T Consensus 496 lARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~-~------~TvIiItHrl--~~i~~aD~Iivl~~G~i~e~G~ 566 (588)
T PRK11174 496 LARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR-R------QTTLMVTHQL--EDLAQWDQIWVMQDGQIVQQGD 566 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC-C------CEEEEEecCh--HHHHhCCEEEEEeCCeEeecCC
Confidence 99999999999999999999999999999999998853 3 7899999986 4567799999999999999999
Q ss_pred ccchH
Q psy10236 265 RRDML 269 (515)
Q Consensus 265 ~~~~~ 269 (515)
.+++.
T Consensus 567 ~~eL~ 571 (588)
T PRK11174 567 YAELS 571 (588)
T ss_pred HHHHH
Confidence 88875
No 260
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=6.1e-41 Score=321.21 Aligned_cols=188 Identities=20% Similarity=0.262 Sum_probs=161.6
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCC--CCCCeeEEEECCeeCCh---hh-hccc
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR--NDAKAFQVILNGHSIPL---NA-LKRR 113 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~--~~~~~G~I~~~G~~~~~---~~-~~~~ 113 (515)
++++|++++| +++.+++|+||++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|+++.. .. .+..
T Consensus 1 l~~~~l~~~~--~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSV--GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEe--CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 4789999987 356799999999999999999999999999999999999 47899999999998743 12 2456
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
++|++|+..+++.+++.+++ +....+||||||||++|||+|+.+|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l-----------------------------------~~~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL-----------------------------------RYVNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHH-----------------------------------hhccccCCHHHHHHHHHHHHHhcCC
Confidence 99999998888888887765 1122579999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHh-hccEEEEEeCCeEEEecCccchHHHH
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFT-MISRVLLVSGGRTMYSGKRRDMLPYF 272 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~-~~Drv~vL~~G~iv~~G~~~~~~~~f 272 (515)
++++|||||+|||+.++..+.+.|+++++++ +|||+++|++. .+.+ +||++++|++|++++.|+. ++..+|
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~------~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~-~~~~~~ 195 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEG------KSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDK-ELALEI 195 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCC------CEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccH-HHHhhh
Confidence 9999999999999999999999999997655 79999999864 5666 7999999999999999944 455444
No 261
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=5.6e-41 Score=370.48 Aligned_cols=214 Identities=18% Similarity=0.279 Sum_probs=181.0
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
..++++|++++|+.+++.+|+|+|+++++||.+||+|+||||||||+++|+|+++|++|+|.+||.++. ...+++.+
T Consensus 340 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 419 (582)
T PRK11176 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQV 419 (582)
T ss_pred CeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhc
Confidence 369999999998644577999999999999999999999999999999999999999999999999874 34678899
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-------ccccCccc----CCChHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-------QVLSTRVG----RLTTSELKRL 183 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~----~LSGGerqRv 183 (515)
+|++|++.+++. |++||+.++. +. ...++++.++++..|+. +..|+.++ +||||||||+
T Consensus 420 ~~v~Q~~~lf~~-Ti~~Ni~~~~----~~-----~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi 489 (582)
T PRK11176 420 ALVSQNVHLFND-TIANNIAYAR----TE-----QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRI 489 (582)
T ss_pred eEEccCceeecc-hHHHHHhcCC----CC-----CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHH
Confidence 999999998874 9999998742 11 01224455566665543 33455554 4999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||+++|++|+|||||++||+.+...+.+.|+++.+ + +|+|+++|++ +..+.||+|++|++|++++.|
T Consensus 490 ~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~------~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g 560 (582)
T PRK11176 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQK-N------RTSLVIAHRL--STIEKADEILVVEDGEIVERG 560 (582)
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-C------CEEEEEecch--HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999998854 2 7899999986 467789999999999999999
Q ss_pred CccchHH
Q psy10236 264 KRRDMLP 270 (515)
Q Consensus 264 ~~~~~~~ 270 (515)
+.+++.+
T Consensus 561 ~~~~l~~ 567 (582)
T PRK11176 561 THAELLA 567 (582)
T ss_pred CHHHHHh
Confidence 9988753
No 262
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.3e-41 Score=333.90 Aligned_cols=222 Identities=16% Similarity=0.178 Sum_probs=180.2
Q ss_pred CCCCCCcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---
Q psy10236 31 SGRPEFFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--- 107 (515)
Q Consensus 31 ~~~~~~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--- 107 (515)
++.-...+.++++|++++|....+.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..
T Consensus 11 ~~~~~~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~ 90 (257)
T cd03288 11 SGLVGLGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPL 90 (257)
T ss_pred cccccCCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCH
Confidence 34344556899999999874333579999999999999999999999999999999999999999999999998742
Q ss_pred hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHH-----HHHHHHHHHc--CCcccccCcccCCChHHH
Q psy10236 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTS-----EQMGLLIEEL--GLTQVLSTRVGRLTTSEL 180 (515)
Q Consensus 108 ~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~v~~LSGGer 180 (515)
...++.++|++|++.+++ .|++||+..... . ...... ..+.+.++.+ |++...+..+.+||||||
T Consensus 91 ~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~ 162 (257)
T cd03288 91 HTLRSRLSIILQDPILFS-GSIRFNLDPECK----C---TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQR 162 (257)
T ss_pred HHHhhhEEEECCCCcccc-cHHHHhcCcCCC----C---CHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHH
Confidence 345778999999988776 599998753210 0 011111 1233455555 666666777889999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEE
Q psy10236 181 KRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTM 260 (515)
Q Consensus 181 qRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv 260 (515)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ + .|||+++|++. ++. .|||+++|++|+++
T Consensus 163 qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~-~------~tiii~sh~~~-~~~-~~dri~~l~~G~i~ 233 (257)
T cd03288 163 QLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFA-D------RTVVTIAHRVS-TIL-DADLVLVLSRGILV 233 (257)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcC-C------CEEEEEecChH-HHH-hCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999998743 4 78999999864 455 49999999999999
Q ss_pred EecCccchH
Q psy10236 261 YSGKRRDML 269 (515)
Q Consensus 261 ~~G~~~~~~ 269 (515)
..|+++++.
T Consensus 234 ~~g~~~~~~ 242 (257)
T cd03288 234 ECDTPENLL 242 (257)
T ss_pred EeCCHHHHH
Confidence 999887764
No 263
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-41 Score=301.39 Aligned_cols=216 Identities=19% Similarity=0.206 Sum_probs=191.1
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC------h---hh
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP------L---NA 109 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~------~---~~ 109 (515)
.++++|+++.| +...+|.||+++.+.||.+.++||||||||||++.|.=+..|.+|+..+-|...+ . ..
T Consensus 2 sirv~~in~~y--g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFY--GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEccccccc--ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 48899999977 6778999999999999999999999999999999999999999999999886552 1 24
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHh-hcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHH
Q psy10236 110 LKRRLVYVRSQSFLSPELNVAQTLTFYS-HLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACC 188 (515)
Q Consensus 110 ~~~~i~yv~q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~a 188 (515)
+|+.+|+|+|+..++|++||.||+.-+. +..+ ..+.+.+.++.++++++.|.+.+|+.+-.|||||+|||+||||
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~g----l~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiara 155 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLG----LSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARA 155 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhC----CCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHH
Confidence 7889999999999999999999987643 2222 2346677889999999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccc
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRD 267 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~ 267 (515)
|+.+|++|++||||++|||.-..++.+++++++..| .|-++++|.- +-+.+.+.||+.|.+|+||+.|+.+-
T Consensus 156 lmmkpqvllfdeptaaldpeitaqvv~iikel~~tg------itqvivthev-~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETG------ITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcC------ceEEEEEeeh-hHHHhhhhheEeeecCeeEeecchhh
Confidence 999999999999999999999999999999999877 6767777763 45778999999999999999998753
No 264
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-41 Score=315.20 Aligned_cols=173 Identities=23% Similarity=0.370 Sum_probs=155.5
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-----hhhccce
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-----NALKRRL 114 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-----~~~~~~i 114 (515)
++++|++++| +++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.+
T Consensus 1 i~~~~l~~~~--~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRY--GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEE--CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 4689999987 45679999999999999999999999999999999999999999999999988742 3456789
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
+|++|++.+++.+|+.||+.+. ||||||||++||+||+.+|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 9999999888899999987542 99999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCe
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~ 258 (515)
+++|||||+|||+.++..+.+.|+++++++ ++|+|+++|++ .++.++||++++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~-----~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQL-----GITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhc-----CCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999998762 27999999985 46777999999999885
No 265
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=9.9e-41 Score=321.24 Aligned_cols=200 Identities=18% Similarity=0.220 Sum_probs=167.5
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
..++++|++++|....+.+++|+|+++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++. ....++.+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 469999999987432357999999999999999999999999999999999999999999999999873 23456789
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
+|++|++.+++ .|+.||+.+... . . .+.+.+.++ .++++.+||||||||++|||+|+.+|+
T Consensus 85 ~~v~q~~~~~~-~tv~~~l~~~~~----~---~----~~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 85 TIIPQDPTLFS-GTIRSNLDPFDE----Y---S----DEEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEecCCcccC-ccHHHHhcccCC----C---C----HHHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999988776 599999965311 0 0 122333333 467889999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCc
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKR 265 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~ 265 (515)
++||||||+|||+.++..+.+.|+++. ++ +|+|+++|++. ++.. ||++++|++|+++..|++
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~-~~------~tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEF-TN------STILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc-CC------CEEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 999999999999999999999999985 34 78999999864 4554 999999999999988763
No 266
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=4.5e-41 Score=377.78 Aligned_cols=209 Identities=19% Similarity=0.247 Sum_probs=179.9
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
..++++|++++|+.+++.+|+|+||++++||.+||+|+||||||||+|+|+|+++|++|+|.+||+++. ...+|+.+
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 369999999998645577999999999999999999999999999999999999999999999999874 45688999
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccc-------ccCccc----CCChHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV-------LSTRVG----RLTTSELKRL 183 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v~----~LSGGerqRv 183 (515)
+||+|++.+++. |++||+.++.. . .++++.++++..|+.+. .|+.++ +||||||||+
T Consensus 530 ~~v~Q~~~lf~g-TI~eNi~~~~~----~-------~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRi 597 (686)
T TIGR03797 530 GVVLQNGRLMSG-SIFENIAGGAP----L-------TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL 597 (686)
T ss_pred EEEccCCccCcc-cHHHHHhcCCC----C-------CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 999999999875 99999987521 1 12345566666666433 345554 4999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||+++|++|+||||||+||+.+..++.+.|+++ + +|+|+++|++ +..+.||+|++|++|++++.|
T Consensus 598 alARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~------~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 598 LIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---K------VTRIVIAHRL--STIRNADRIYVLDAGRVVQQG 666 (686)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---C------CeEEEEecCh--HHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999876 3 6888888986 456779999999999999999
Q ss_pred CccchH
Q psy10236 264 KRRDML 269 (515)
Q Consensus 264 ~~~~~~ 269 (515)
+.+++.
T Consensus 667 ~~~~Ll 672 (686)
T TIGR03797 667 TYDELM 672 (686)
T ss_pred CHHHHH
Confidence 998875
No 267
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-41 Score=353.37 Aligned_cols=210 Identities=20% Similarity=0.344 Sum_probs=182.6
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeC---ChhhhccceEE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI---PLNALKRRLVY 116 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~---~~~~~~~~i~y 116 (515)
++.+|+++.|+. ++++++|+|+++++|+.+||+|+||||||||+++|+|+.+|++|+|.+||.+. +...++++++|
T Consensus 321 i~~~~l~~~y~~-g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 321 ISLENLSFRYPD-GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred eeecceEEecCC-CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 445599999864 44899999999999999999999999999999999999999999999999876 44678999999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccc------ccCcccC----CChHHHHHHHHH
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV------LSTRVGR----LTTSELKRLSIA 186 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~------~~~~v~~----LSGGerqRv~IA 186 (515)
|+|++.+++. |++||+.++.. ...++.+.++++..||.+. .|+.+++ |||||+|||++|
T Consensus 400 v~Q~p~lf~g-TireNi~l~~~----------~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLA 468 (559)
T COG4988 400 VSQNPYLFAG-TIRENILLARP----------DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALA 468 (559)
T ss_pred eCCCCccccc-cHHHHhhccCC----------cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHH
Confidence 9999998876 99999998531 1234566777777777544 4555665 999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCcc
Q psy10236 187 CCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRR 266 (515)
Q Consensus 187 ~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~ 266 (515)
|||+.+++++++||||++||.++.+.+.+.|.+++++ +|+++++|++ ....-+|+|++|++|++++.|.++
T Consensus 469 RAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-------ktvl~itHrl--~~~~~~D~I~vld~G~l~~~g~~~ 539 (559)
T COG4988 469 RALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-------KTVLVITHRL--EDAADADRIVVLDNGRLVEQGTHE 539 (559)
T ss_pred HHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-------CeEEEEEcCh--HHHhcCCEEEEecCCceeccCCHH
Confidence 9999999999999999999999999999999999874 7999999975 466779999999999999999999
Q ss_pred chHH
Q psy10236 267 DMLP 270 (515)
Q Consensus 267 ~~~~ 270 (515)
++.+
T Consensus 540 ~L~~ 543 (559)
T COG4988 540 ELSE 543 (559)
T ss_pred HHhh
Confidence 8753
No 268
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=9.3e-41 Score=312.70 Aligned_cols=170 Identities=23% Similarity=0.350 Sum_probs=151.9
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceEE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLVY 116 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~y 116 (515)
++++|++++|..+++.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 47899999874333569999999999999999999999999999999999999999999999998742 345678999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
++|++.+++. |++||+ ||||||||++|||||+.+|+++
T Consensus 81 ~~q~~~~~~~-tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 81 LPQDDELFSG-SIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred ECCCCccccC-cHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999887774 898876 9999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
||||||+|||+.++..+.+.|++++++| +|+|+++|+.. .+ +.||++++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~~------~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAG------ATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhCC------CEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 9999999999999999999999997665 89999999863 45 68999999999974
No 269
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=8.8e-41 Score=314.21 Aligned_cols=176 Identities=22% Similarity=0.347 Sum_probs=154.8
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccceEEE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRLVYV 117 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i~yv 117 (515)
++++|++++|...++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 47899999874322469999999999999999999999999999999999999999999999997642 2456789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|++.+++ .|++||+ +.+||||||||++|||||+.+|++||
T Consensus 81 ~q~~~~~~-~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 81 NQRPYLFD-TTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred ccCCeeec-ccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99987775 6888876 56899999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
|||||+|||+.++..+.+.|++++ ++ +|||+++|++. ++ ..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~-~~------~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVL-KD------KTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHc-CC------CEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999985 34 78999999864 45 479999999999998754
No 270
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-40 Score=349.56 Aligned_cols=213 Identities=16% Similarity=0.190 Sum_probs=182.0
Q ss_pred cCeEEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceE
Q psy10236 37 FPHLQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLV 115 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~ 115 (515)
.++++++||++.+..+ .+.+|+|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~---------- 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA---------- 88 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----------
Confidence 3579999999887432 14699999999999999999999999999999999999999999999999752
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCE
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADI 195 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~l 195 (515)
++.+...+.+.+|++||+.+....... ...+..++++++++.+||.+..++++++||||||||++|||||+.+|++
T Consensus 89 ~i~~~~~l~~~lTV~EnL~l~~~~~~~----~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~L 164 (549)
T PRK13545 89 LIAISSGLNGQLTGIENIELKGLMMGL----TKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDI 164 (549)
T ss_pred eEEeccccCCCCcHHHHHHhhhhhcCC----CHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCE
Confidence 122234566779999999875433221 1233445678899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 196 LLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 196 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
|||||||+|||+.++..+.+.|++++++| +|||+++|++ .++.++||++++|++|+++..|+++++..
T Consensus 165 LLLDEPTsgLD~~sr~~LlelL~el~~~G------~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 165 LVIDEALSVGDQTFTKKCLDKMNEFKEQG------KTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHhCC------CEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999997665 7999999985 47889999999999999999999887764
No 271
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=361.00 Aligned_cols=218 Identities=20% Similarity=0.268 Sum_probs=185.8
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hhhcc
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NALKR 112 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~~~~ 112 (515)
.+.++++|+++ .+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++
T Consensus 255 ~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~ 327 (501)
T PRK10762 255 EVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327 (501)
T ss_pred CcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHC
Confidence 35799999974 26999999999999999999999999999999999999999999999988742 22456
Q ss_pred ceEEEecCC---CCCCCCCHHHHHHHHhhcCCCC--CCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHH
Q psy10236 113 RLVYVRSQS---FLSPELNVAQTLTFYSHLRRPP--KHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIA 186 (515)
Q Consensus 113 ~i~yv~q~~---~~~~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA 186 (515)
.++|++|++ .+++.+||.||+.+........ ........+++++++++.+||. +..++++++|||||||||+||
T Consensus 328 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA 407 (501)
T PRK10762 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIA 407 (501)
T ss_pred CCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHH
Confidence 799999985 5788999999998743111000 0001123345688999999995 678999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCcc
Q psy10236 187 CCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRR 266 (515)
Q Consensus 187 ~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~ 266 (515)
+||+.+|++|||||||+|||+.++..+.+.|++++++| .|||+++|++ .++.++||++++|++|+++..|+++
T Consensus 408 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g------~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~~~~ 480 (501)
T PRK10762 408 RGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEG------LSIILVSSEM-PEVLGMSDRILVMHEGRISGEFTRE 480 (501)
T ss_pred HHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCC------CEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEeccc
Confidence 99999999999999999999999999999999998766 7999999985 5789999999999999999999887
Q ss_pred ch
Q psy10236 267 DM 268 (515)
Q Consensus 267 ~~ 268 (515)
++
T Consensus 481 ~~ 482 (501)
T PRK10762 481 QA 482 (501)
T ss_pred cC
Confidence 65
No 272
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.2e-40 Score=316.41 Aligned_cols=179 Identities=20% Similarity=0.240 Sum_probs=154.7
Q ss_pred CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-----hhhccceEEEecCCC-CCC
Q psy10236 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-----NALKRRLVYVRSQSF-LSP 125 (515)
Q Consensus 52 ~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~-~~~ 125 (515)
+++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++|++. .+.
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 45679999999999999999999999999999999999999999999999998731 134678999999863 233
Q ss_pred CCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q psy10236 126 ELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFM 205 (515)
Q Consensus 126 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgL 205 (515)
..||.||+.+....... ...+..++++++++.+||.+..++++.+||||||||++|||||+.+|+++||||||+||
T Consensus 83 ~~tv~~nl~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 158 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGL----SEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158 (190)
T ss_pred cccHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 57999999886543211 12334467889999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCC
Q psy10236 206 DIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPP 240 (515)
Q Consensus 206 D~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~ 240 (515)
|+.++..+.+.|++++++| +|||+++|++
T Consensus 159 D~~~~~~~~~~l~~~~~~~------~tili~sH~~ 187 (190)
T TIGR01166 159 DPAGREQMLAILRRLRAEG------MTVVISTHDV 187 (190)
T ss_pred CHHHHHHHHHHHHHHHHcC------CEEEEEeecc
Confidence 9999999999999998765 8999999975
No 273
>KOG0058|consensus
Probab=100.00 E-value=3.8e-41 Score=360.82 Aligned_cols=216 Identities=18% Similarity=0.302 Sum_probs=184.5
Q ss_pred cCeEEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhcc
Q psy10236 37 FPHLQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKR 112 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~ 112 (515)
...++++|++|.|+.. +.+||+|+||+|+|||++||+||||+||||+.++|-.++.|++|+|.+||+|+. ...+|+
T Consensus 463 ~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~ 542 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRR 542 (716)
T ss_pred cceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHH
Confidence 3479999999998643 567999999999999999999999999999999999999999999999999984 356889
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHH-----HHHHHHHcCCcccccCcccC----CChHHHHHH
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQ-----MGLLIEELGLTQVLSTRVGR----LTTSELKRL 183 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~v~~----LSGGerqRv 183 (515)
+||+|.|++.+|.. ||+|||.++.. .. ..++.... +.+.+ .++++..|+.+|+ ||||||||+
T Consensus 543 ~Ig~V~QEPvLFs~-sI~eNI~YG~~--~~----t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGEkG~qLSGGQKQRI 613 (716)
T KOG0058|consen 543 KIGLVGQEPVLFSG-SIRENIAYGLD--NA----TDEEIEAAAKMANAHEFI--TNFPDGYNTVVGEKGSQLSGGQKQRI 613 (716)
T ss_pred Heeeeeccceeecc-cHHHHHhcCCC--CC----CHHHHHHHHHHhChHHHH--HhCccccccccCCccccccchHHHHH
Confidence 99999999999976 99999998754 11 12222211 12222 3567788999985 999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||++||.||||||.||+||..+...+.+.|.++.+ ++|||++.|.. ...+.+|+|+|+++|++++.|
T Consensus 614 AIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-------~rTVlvIAHRL--STV~~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 614 AIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-------GRTVLVIAHRL--STVRHADQIVVIDKGRVVEMG 684 (716)
T ss_pred HHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-------CCeEEEEehhh--hHhhhccEEEEEcCCeEEecc
Confidence 999999999999999999999999999999999998765 37999998874 467789999999999999999
Q ss_pred CccchHH
Q psy10236 264 KRRDMLP 270 (515)
Q Consensus 264 ~~~~~~~ 270 (515)
+.+|+++
T Consensus 685 ~h~eLl~ 691 (716)
T KOG0058|consen 685 THDELLS 691 (716)
T ss_pred cHHHHhh
Confidence 9988863
No 274
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=6.4e-41 Score=315.79 Aligned_cols=176 Identities=28% Similarity=0.453 Sum_probs=155.8
Q ss_pred EEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceEEE
Q psy10236 41 QVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLVYV 117 (515)
Q Consensus 41 ~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~yv 117 (515)
+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+++.++|+
T Consensus 1 ~~~~l~~~~--~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGY--GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEE--CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 468999887 34679999999999999999999999999999999999999999999999998732 2344567777
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+| +++.+|+.+..++.+.+||||||||++|||+|+.+|+++|
T Consensus 79 ~q--------------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 120 (180)
T cd03214 79 PQ--------------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILL 120 (180)
T ss_pred HH--------------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 66 5677788777888999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
|||||+|||+.++..+.+.|++++++ + +|+|+++|++ .++.++||++++|++|++++.|
T Consensus 121 lDEP~~~LD~~~~~~~~~~l~~~~~~~~------~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 121 LDEPTSHLDIAHQIELLELLRRLARERG------KTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhcC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999775 4 7999999985 4678999999999999998654
No 275
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.2e-40 Score=368.55 Aligned_cols=210 Identities=15% Similarity=0.255 Sum_probs=181.1
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
..++++|++++|+ +++.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++|+|.+||.++. ...+++.+
T Consensus 339 ~~i~~~~v~f~y~-~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 339 GRIDIDNVSFAYR-DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred CeEEEEEEEEEeC-CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 4699999999985 3467999999999999999999999999999999999999999999999999874 35688999
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccc-------ccCccc----CCChHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV-------LSTRVG----RLTTSELKRL 183 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v~----~LSGGerqRv 183 (515)
+||+|++.+|+. |++||+.++. +. .++++.++++..|+.+. .|+.++ +||||||||+
T Consensus 418 ~~v~Q~~~lF~~-Ti~~NI~~~~----~~-------~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRi 485 (592)
T PRK10790 418 AMVQQDPVVLAD-TFLANVTLGR----DI-------SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLL 485 (592)
T ss_pred EEEccCCccccc-hHHHHHHhCC----CC-------CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 999999999987 9999998852 11 12445666677665432 344443 4999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||+++|+||+|||||++||+.+...+.+.|+++.+ + +|+|+++|++ +....||+|++|++|+++..|
T Consensus 486 alARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~------~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G 556 (592)
T PRK10790 486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-H------TTLVVIAHRL--STIVEADTILVLHRGQAVEQG 556 (592)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-C------CEEEEEecch--HHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999864 2 7888999986 466779999999999999999
Q ss_pred CccchH
Q psy10236 264 KRRDML 269 (515)
Q Consensus 264 ~~~~~~ 269 (515)
+.+++.
T Consensus 557 ~~~~L~ 562 (592)
T PRK10790 557 THQQLL 562 (592)
T ss_pred CHHHHH
Confidence 999876
No 276
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=7.9e-41 Score=377.21 Aligned_cols=211 Identities=17% Similarity=0.261 Sum_probs=178.3
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
..++++|++++|+..++.+|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++. ...+|+.+
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 469999999998655578999999999999999999999999999999999999999999999999873 35688999
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-------cccCccc----CCChHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-------VLSTRVG----RLTTSELKRL 183 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~----~LSGGerqRv 183 (515)
+||+|++.+++. |++||+.++. +. ..++++.++++..|+.+ ..|+.++ +||||||||+
T Consensus 556 ~~v~Q~~~lf~g-Ti~eNi~l~~----~~------~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRi 624 (710)
T TIGR03796 556 AMVDQDIFLFEG-TVRDNLTLWD----PT------IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRL 624 (710)
T ss_pred eEEecCChhhhc-cHHHHhhCCC----CC------CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHH
Confidence 999999998865 9999998642 11 11234445555555533 2344443 4999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||+++|++||||||||+||+.+..++.+.|++ .+ +|+|+++|++ +....||||++|++|++++.|
T Consensus 625 aLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~------~T~IiitHrl--~~i~~~D~Iivl~~G~i~~~G 693 (710)
T TIGR03796 625 EIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RG------CTCIIVAHRL--STIRDCDEIIVLERGKVVQRG 693 (710)
T ss_pred HHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cC------CEEEEEecCH--HHHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999986 23 7899999986 456779999999999999999
Q ss_pred CccchHH
Q psy10236 264 KRRDMLP 270 (515)
Q Consensus 264 ~~~~~~~ 270 (515)
+.+++.+
T Consensus 694 ~~~~Ll~ 700 (710)
T TIGR03796 694 THEELWA 700 (710)
T ss_pred CHHHHHH
Confidence 9998864
No 277
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=360.83 Aligned_cols=218 Identities=18% Similarity=0.257 Sum_probs=185.2
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hhhccc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~~~~~ 113 (515)
+.++++|++.. .+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|+++.. ...++.
T Consensus 256 ~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 256 VRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred cEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 46899999731 48999999999999999999999999999999999999999999999988742 234578
Q ss_pred eEEEecCC---CCCCCCCHHHHHHHHhhcCCCC-C-CCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHH
Q psy10236 114 LVYVRSQS---FLSPELNVAQTLTFYSHLRRPP-K-HSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIAC 187 (515)
Q Consensus 114 i~yv~q~~---~~~~~lTv~e~l~~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~ 187 (515)
++|++|+. .+++.+|+.||+.+........ . .......++.++++++.+|+. +..++++++|||||||||+||+
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~ 409 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR 409 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence 99999985 4889999999998643211100 0 001122345678899999994 7889999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccc
Q psy10236 188 CLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRD 267 (515)
Q Consensus 188 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~ 267 (515)
+|+.+|+||||||||+|||+.++.++.++|++++++| .|||+++|+. .++.++||++++|++|++++.|++++
T Consensus 410 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g------~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 410 WLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQG------VAVLFVSSDL-PEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCC------CEEEEECCCH-HHHHhhCCEEEEEECCEEEEEEcccc
Confidence 9999999999999999999999999999999998776 7999999985 57899999999999999999998876
Q ss_pred h
Q psy10236 268 M 268 (515)
Q Consensus 268 ~ 268 (515)
+
T Consensus 483 ~ 483 (501)
T PRK11288 483 A 483 (501)
T ss_pred C
Confidence 4
No 278
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.4e-40 Score=366.31 Aligned_cols=213 Identities=23% Similarity=0.374 Sum_probs=183.0
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
+.++++|++++|+.+++.+|+|+|+++++||.+||+||||||||||+++|+|+++|++|+|.+||.++. ...+++.+
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 469999999998543457999999999999999999999999999999999999999999999999874 35678899
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccc------cCccc----CCChHHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVL------STRVG----RLTTSELKRLS 184 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------~~~v~----~LSGGerqRv~ 184 (515)
+||+|++.+++. |++||+.++.. ...++++.++++..++.+.. |+.++ +||||||||++
T Consensus 417 ~~v~Q~~~lf~~-ti~~Ni~~~~~----------~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRia 485 (574)
T PRK11160 417 SVVSQRVHLFSA-TLRDNLLLAAP----------NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLG 485 (574)
T ss_pred eEEcccchhhcc-cHHHHhhcCCC----------ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHH
Confidence 999999988875 99999987531 11235677788888886554 34443 49999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||||+++|++|+|||||++||+.+...+.+.|+++.+ + +|+|+++|++. ....||+|++|++|++++.|+
T Consensus 486 lARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~-~------~tviiitHr~~--~~~~~d~i~~l~~G~i~~~g~ 556 (574)
T PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-N------KTVLMITHRLT--GLEQFDRICVMDNGQIIEQGT 556 (574)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-C------CEEEEEecChh--HHHhCCEEEEEeCCeEEEeCC
Confidence 99999999999999999999999999999999999853 3 78999999864 446699999999999999999
Q ss_pred ccchHH
Q psy10236 265 RRDMLP 270 (515)
Q Consensus 265 ~~~~~~ 270 (515)
.+++.+
T Consensus 557 ~~~l~~ 562 (574)
T PRK11160 557 HQELLA 562 (574)
T ss_pred HHHHHh
Confidence 888753
No 279
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.6e-40 Score=363.85 Aligned_cols=217 Identities=21% Similarity=0.349 Sum_probs=181.2
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
..++++|++++|+.+++.+|+|+|+++++||.++|+||||||||||+++|+|.++|++|+|.+||.++. ...+++.+
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 469999999998544568999999999999999999999999999999999999999999999999874 34578899
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHH-----HHHHHHHHHc--CCcccccCcccCCChHHHHHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTS-----EQMGLLIEEL--GLTQVLSTRVGRLTTSELKRLSIAC 187 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~v~~LSGGerqRv~IA~ 187 (515)
+||+|++.+++. |++||+.+... . ..+++.. ...++.++.+ |++...+....+||||||||++|||
T Consensus 395 ~~v~q~~~lf~~-ti~~Ni~~~~~----~--~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lAR 467 (544)
T TIGR01842 395 GYLPQDVELFPG-TVAENIARFGE----N--ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALAR 467 (544)
T ss_pred EEecCCcccccc-cHHHHHhccCC----C--CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHH
Confidence 999999999876 99999985321 0 0111111 1234455555 5555555566779999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccc
Q psy10236 188 CLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRD 267 (515)
Q Consensus 188 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~ 267 (515)
||+++|++|||||||+|||+.++..+.+.|+++..++ +|+|+++|++. ..+.||+|++|++|++++.|+.++
T Consensus 468 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~------~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 539 (544)
T TIGR01842 468 ALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARG------ITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDE 539 (544)
T ss_pred HHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCC------CEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHH
Confidence 9999999999999999999999999999999986544 79999999863 567899999999999999999877
Q ss_pred hH
Q psy10236 268 ML 269 (515)
Q Consensus 268 ~~ 269 (515)
+.
T Consensus 540 l~ 541 (544)
T TIGR01842 540 VL 541 (544)
T ss_pred Hh
Confidence 64
No 280
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.3e-40 Score=322.51 Aligned_cols=198 Identities=21% Similarity=0.255 Sum_probs=167.4
Q ss_pred EEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCC--CCCCHHHHHHHHhhc
Q psy10236 62 FEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLS--PELNVAQTLTFYSHL 139 (515)
Q Consensus 62 ~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~--~~lTv~e~l~~~~~~ 139 (515)
|++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++. ..++.++|++|++.++ ..+|+.||+.+....
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG 78 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence 468999999999999999999999999999999999999998763 2456799999987654 347999999875321
Q ss_pred CCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHH
Q psy10236 140 RRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRG 219 (515)
Q Consensus 140 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~ 219 (515)
............++++.++++.+|+.+..++++++|||||||||+|||+|+.+|+++|+||||+|||+.++..+.+.|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~ 158 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIE 158 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 10000001122345688899999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 220 WASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 220 l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
++++| +|+|+++|++ .++.++||+++++ +|++++.|+++++.
T Consensus 159 ~~~~~------~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 159 LAGAG------TAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHcC------CEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 98665 8999999985 4688999999999 89999999887653
No 281
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.5e-40 Score=374.10 Aligned_cols=213 Identities=22% Similarity=0.367 Sum_probs=180.7
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
..++++|++++|+.+++.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++|+|.+||.++. ...+|+.+
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence 469999999998644567999999999999999999999999999999999999999999999999874 35688999
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-------cccCccc----CCChHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-------VLSTRVG----RLTTSELKRL 183 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~----~LSGGerqRv 183 (515)
+||+|++.+++. |++||+.+.. +. ..++++.++++..|+.+ ..|+.++ +||||||||+
T Consensus 542 ~~v~Q~~~lf~~-TI~eNi~~~~----~~------~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRl 610 (694)
T TIGR03375 542 GYVPQDPRLFYG-TLRDNIALGA----PY------ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAV 610 (694)
T ss_pred EEECCChhhhhh-hHHHHHhCCC----CC------CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHH
Confidence 999999998875 9999998742 10 11234455555555433 3344443 5999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||+++|+++|||||||+||+.+..++.+.|+++.+ + +|+|+++|++ +..+.||+|++|++|++++.|
T Consensus 611 alARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~------~T~iiItHrl--~~~~~~D~iivl~~G~i~e~G 681 (694)
T TIGR03375 611 ALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-G------KTLVLVTHRT--SLLDLVDRIIVMDNGRIVADG 681 (694)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-C------CEEEEEecCH--HHHHhCCEEEEEeCCEEEeeC
Confidence 999999999999999999999999999999999998864 3 7888888986 456889999999999999999
Q ss_pred CccchHH
Q psy10236 264 KRRDMLP 270 (515)
Q Consensus 264 ~~~~~~~ 270 (515)
+.+++++
T Consensus 682 ~~~eLl~ 688 (694)
T TIGR03375 682 PKDQVLE 688 (694)
T ss_pred CHHHHHH
Confidence 9988764
No 282
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-41 Score=324.05 Aligned_cols=198 Identities=20% Similarity=0.320 Sum_probs=177.4
Q ss_pred eeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-------hhhccceEEEecCCCCCCCCCH
Q psy10236 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-------NALKRRLVYVRSQSFLSPELNV 129 (515)
Q Consensus 57 L~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~~~~~~lTv 129 (515)
-=+++|+.+.-.++||-|+||||||||+|+|+|+.+|++|.|.+||+.+.. ...++++|||+|+-.+||++||
T Consensus 14 ~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 346888887767999999999999999999999999999999999987622 2357899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhh
Q psy10236 130 AQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFD 209 (515)
Q Consensus 130 ~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~ 209 (515)
+.||.|+.... .....+++.+.+|+++..+++|.+|||||||||+|+|||++.|++|+||||.+.||..-
T Consensus 94 rgNL~YG~~~~----------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 94 RGNLRYGMWKS----------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred ecchhhhhccc----------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 99999875321 23567889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 210 TFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 210 ~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
+.+++-+|.+++++- +..|+.++|. .+|+.+++|+|++|.+|++..+|+.+++.+
T Consensus 164 K~EilpylERL~~e~-----~IPIlYVSHS-~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 164 KREILPYLERLRDEI-----NIPILYVSHS-LDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred hhHHHHHHHHHHHhc-----CCCEEEEecC-HHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 999999999999874 3678888887 579999999999999999999999988753
No 283
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-41 Score=347.78 Aligned_cols=212 Identities=22% Similarity=0.354 Sum_probs=184.6
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i~ 115 (515)
.++++|++++|+.+..++|+|+||++++||.+||+|+||||||||++.|+|.++|++|+|.+||.++. .+.+++.++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 79999999999766668999999999999999999999999999999999999999999999998873 345788999
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccccc-------CcccC----CChHHHHHHH
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLS-------TRVGR----LTTSELKRLS 184 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~v~~----LSGGerqRv~ 184 (515)
++.|...+|.. |+++||.++.. ...++.+.++++.+||++... +.+++ ||||||||++
T Consensus 416 vl~Qr~hlF~~-Tlr~NL~lA~~----------~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA 484 (573)
T COG4987 416 VLTQRVHLFSG-TLRDNLRLANP----------DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484 (573)
T ss_pred hhccchHHHHH-HHHHHHhhcCC----------CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence 99999888765 99999987531 123456777888888865543 34443 9999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||+|++|.++++|||||.|||+.+..++++.|.+-.+ ++|+++++|+.. -.+.||||++|++|++++.|.
T Consensus 485 lAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-------~kTll~vTHrL~--~le~~drIivl~~Gkiie~G~ 555 (573)
T COG4987 485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-------GKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEGT 555 (573)
T ss_pred HHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-------CCeEEEEecccc--cHhhcCEEEEEECCeeeecCC
Confidence 99999999999999999999999999999999998765 389999999864 467899999999999999999
Q ss_pred ccchHH
Q psy10236 265 RRDMLP 270 (515)
Q Consensus 265 ~~~~~~ 270 (515)
..++..
T Consensus 556 ~~~Ll~ 561 (573)
T COG4987 556 HAELLA 561 (573)
T ss_pred HHhhhc
Confidence 998764
No 284
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.6e-40 Score=357.45 Aligned_cols=217 Identities=22% Similarity=0.248 Sum_probs=183.7
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChh----hhcc
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLN----ALKR 112 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~----~~~~ 112 (515)
.++|+++|+++ .+|+|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|+++... ..++
T Consensus 266 ~~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 266 APVLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred CceEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 45899999973 159999999999999999999999999999999999999999999999987421 2356
Q ss_pred ceEEEecCC---CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHHH
Q psy10236 113 RLVYVRSQS---FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACC 188 (515)
Q Consensus 113 ~i~yv~q~~---~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~a 188 (515)
.++|++|+. .+++.+|+.||+............ .....+++++++++.+||. +..++++++|||||||||+||+|
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~a 417 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWI-KPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKC 417 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhcccc-ChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHH
Confidence 799999974 578889999998643111000000 1122345688999999997 78999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
|+.+|+||||||||+|||+.++..+.+.|++++++| .+||+++|++ .++.++|||+++|++|+++..|+++++
T Consensus 418 l~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g------~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 418 LEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQN------VAVLFISSDL-EEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCC------CEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999999999999999999999999999998766 7999999985 578999999999999999999988654
No 285
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.6e-40 Score=372.78 Aligned_cols=212 Identities=15% Similarity=0.272 Sum_probs=178.7
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeC---Chhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI---PLNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~---~~~~~~~~i 114 (515)
..++++|++++|+ +++.+|+|+|+++++||.+||+||||||||||+++|+|+++|++|+|++||.++ +...+|+.+
T Consensus 472 ~~I~~~~vsf~y~-~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 472 GDIVINDVSYSYG-YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred CcEEEEEEEEEcC-CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence 4699999999985 456799999999999999999999999999999999999999999999999987 345688999
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-------cccCccc----CCChHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-------VLSTRVG----RLTTSELKRL 183 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~----~LSGGerqRv 183 (515)
+||+|++.+++. |++||+.++.. +. ..++++.++++..|+.+ ..|+.++ +||||||||+
T Consensus 551 ~~v~Q~~~lf~g-TI~eNi~l~~~---~~------~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRi 620 (708)
T TIGR01193 551 NYLPQEPYIFSG-SILENLLLGAK---EN------VSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRI 620 (708)
T ss_pred EEEecCceehhH-HHHHHHhccCC---CC------CCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHH
Confidence 999999998876 99999987521 10 11233445555555432 3355554 4999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+||||++++|++|||||||++||+.+...+.+.|+++ ++ +|+|+++|.+ +..+.||+|++|++|++++.|
T Consensus 621 alARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~------~T~IiitHr~--~~~~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 621 ALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QD------KTIIFVAHRL--SVAKQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cC------CEEEEEecch--HHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999975 34 7889999986 466789999999999999999
Q ss_pred CccchHH
Q psy10236 264 KRRDMLP 270 (515)
Q Consensus 264 ~~~~~~~ 270 (515)
+.+++.+
T Consensus 691 ~~~~L~~ 697 (708)
T TIGR01193 691 SHDELLD 697 (708)
T ss_pred CHHHHHh
Confidence 9988763
No 286
>KOG0055|consensus
Probab=100.00 E-value=2.4e-39 Score=364.38 Aligned_cols=213 Identities=20% Similarity=0.308 Sum_probs=178.2
Q ss_pred CeEEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccc
Q psy10236 38 PHLQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~ 113 (515)
..++++|++++|+.. +..+|+|+||.|++|+.+||+|||||||||++++|.+++.|++|+|.+||.++. .+.+|.+
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQ 428 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhh
Confidence 479999999998643 457999999999999999999999999999999999999999999999999884 3568899
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHH-------HcCCcccccCcccC----CChHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIE-------ELGLTQVLSTRVGR----LTTSELKR 182 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~-------~lgL~~~~~~~v~~----LSGGerqR 182 (515)
||.|.|++.+|. .|++||+.++..- ..++++.+..+ ...|.+..++.+++ ||||||||
T Consensus 429 iglV~QePvlF~-~tI~eNI~~G~~d----------at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQR 497 (1228)
T KOG0055|consen 429 IGLVSQEPVLFA-TTIRENIRYGKPD----------ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQR 497 (1228)
T ss_pred cCeeeechhhhc-ccHHHHHhcCCCc----------ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHH
Confidence 999999997774 6999999985311 11122222222 12455566777764 99999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
++|||||+++|+|||||||||+||+.+...+.+.|.++.+ |+|.|++.|.. +.+.. +|+|++|++|++|+.
T Consensus 498 IAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~-------grTTivVaHRL-StIrn-aD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 498 IAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK-------GRTTIVVAHRL-STIRN-ADKIAVMEEGKIVEQ 568 (1228)
T ss_pred HHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc-------CCeEEEEeeeh-hhhhc-cCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999998765 36777777764 34555 999999999999999
Q ss_pred cCccchHH
Q psy10236 263 GKRRDMLP 270 (515)
Q Consensus 263 G~~~~~~~ 270 (515)
|+++|++.
T Consensus 569 G~h~ELi~ 576 (1228)
T KOG0055|consen 569 GTHDELIA 576 (1228)
T ss_pred cCHHHHHh
Confidence 99999874
No 287
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-40 Score=315.21 Aligned_cols=221 Identities=20% Similarity=0.268 Sum_probs=186.9
Q ss_pred CcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hhhc
Q psy10236 36 FFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NALK 111 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~~~ 111 (515)
..+.++++|+++.+ +++.+|+|+|++|++||-++|+|||||||||||++++|..+|++|.+.+.|+.... .++|
T Consensus 28 ~~~li~l~~v~v~r--~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elr 105 (257)
T COG1119 28 NEPLIELKNVSVRR--NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105 (257)
T ss_pred CcceEEecceEEEE--CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHH
Confidence 44679999999986 78999999999999999999999999999999999999999999999999998732 5689
Q ss_pred cceEEEec--CCCCCCCCCHHHHHHHHh--hcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHH
Q psy10236 112 RRLVYVRS--QSFLSPELNVAQTLTFYS--HLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIAC 187 (515)
Q Consensus 112 ~~i~yv~q--~~~~~~~lTv~e~l~~~~--~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~ 187 (515)
++||+|.- ...+.++.+|+|-+.-+. ..-... ........+++..+++.+|+.+.++++.++||-||||||.|||
T Consensus 106 k~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~-~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaR 184 (257)
T COG1119 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQ-EDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIAR 184 (257)
T ss_pred HHhCccCHHHHhhcccccccceeeeecccccccccc-cCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHH
Confidence 99999943 334456678888664322 111111 0123456678889999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 188 CLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 188 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
||+.+|++||||||++|||...+..+++.|.+++... .+.++++++||+ +|+...+++++.+++|++++.|.
T Consensus 185 ALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~----~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 185 ALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASP----GAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCC----CCceEEEEEcch-hhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999998652 136788888885 58999999999999999999874
No 288
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-39 Score=306.18 Aligned_cols=230 Identities=20% Similarity=0.266 Sum_probs=199.7
Q ss_pred CeEEEEeeEEeCCCCC-cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC--CCCeeEEEECCeeCCh----hhh
Q psy10236 38 PHLQVRGLEVPPSSKN-KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN--DAKAFQVILNGHSIPL----NAL 110 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~-~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~--~~~~G~I~~~G~~~~~----~~~ 110 (515)
.+|+++||+++. .+ +.||++||++|++||+.+||||||||||||.++|+|.- ++++|+|.++|+++.. ++.
T Consensus 2 ~~L~I~dLhv~v--~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERA 79 (251)
T COG0396 2 MMLEIKDLHVEV--EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERA 79 (251)
T ss_pred ceeEEeeeEEEe--cCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHH
Confidence 379999999986 34 59999999999999999999999999999999999985 6799999999999842 345
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-cccCcccC-CChHHHHHHHHHHH
Q psy10236 111 KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-VLSTRVGR-LTTSELKRLSIACC 188 (515)
Q Consensus 111 ~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~-LSGGerqRv~IA~a 188 (515)
|..+...+|.+.-+|..++.+.|..+.+.+...... ..+..+++++.++.+++++ .+++.++. +|||||||..|+.+
T Consensus 80 r~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~-~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~ 158 (251)
T COG0396 80 RAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGI-LPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQL 158 (251)
T ss_pred hcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccc-cHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHH
Confidence 677888899999999999999998877654322111 2345677889999999975 78888886 99999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhc--cEEEEEeCCeEEEecCcc
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMI--SRVLLVSGGRTMYSGKRR 266 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~--Drv~vL~~G~iv~~G~~~ 266 (515)
++.+|++.|||||-||||..+-..+.+.++++++.+ +.++++||.. .+.++. |+|.||.+|||+..|.+
T Consensus 159 ~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~------~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~- 229 (251)
T COG0396 159 LLLEPKLAILDEPDSGLDIDALKIVAEGINALREEG------RGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP- 229 (251)
T ss_pred HhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCC------CeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-
Confidence 999999999999999999999999999999999876 6777777753 677777 99999999999999999
Q ss_pred chHHHHHhCCCCC
Q psy10236 267 DMLPYFAAADYPC 279 (515)
Q Consensus 267 ~~~~~f~~~g~~~ 279 (515)
++..+.+..||.|
T Consensus 230 el~~~le~~gy~~ 242 (251)
T COG0396 230 ELAEELEEKGYDW 242 (251)
T ss_pred HHHHHHHHhchHH
Confidence 8888888888865
No 289
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=9.3e-39 Score=355.74 Aligned_cols=220 Identities=18% Similarity=0.271 Sum_probs=192.1
Q ss_pred CeEEEEeeEEeCCCC--CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hh---
Q psy10236 38 PHLQVRGLEVPPSSK--NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NA--- 109 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~--~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~--- 109 (515)
++|+++|+++.|+.+ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 479999999988422 2579999999999999999999999999999999999999999999999998742 22
Q ss_pred -hccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHH
Q psy10236 110 -LKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACC 188 (515)
Q Consensus 110 -~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~a 188 (515)
.++.++|++|+..+++.+|+.||+.+....... ...+.++++.++++.+||.+..++++++|||||+||++|||+
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~----~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAra 158 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGL----ERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARA 158 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHH
Confidence 256799999999999999999999876533221 123445678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
|+.+|++|+|||||+|||+.++..+.++|+++++++ +|+++++|++. ..+.|||+++|++|++++.|++++.
T Consensus 159 L~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g------~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 159 LMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRG------HTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC------CEEEEECCCHH--HHHhCCEEEEEECCEEEeecCcccc
Confidence 999999999999999999999999999999997665 89999999863 4467999999999999999998765
Q ss_pred H
Q psy10236 269 L 269 (515)
Q Consensus 269 ~ 269 (515)
.
T Consensus 231 ~ 231 (648)
T PRK10535 231 V 231 (648)
T ss_pred c
Confidence 3
No 290
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=6.7e-40 Score=368.98 Aligned_cols=211 Identities=18% Similarity=0.287 Sum_probs=175.5
Q ss_pred CeEEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccc
Q psy10236 38 PHLQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~ 113 (515)
..++++|++++|+.. ++.+|+|+||+++|||.+||+||||||||||+++|+|+++|++|+|.+||+++. ...+++.
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 469999999998532 467999999999999999999999999999999999999999999999999874 3567889
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-------cccCccc----CCChHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-------VLSTRVG----RLTTSELKR 182 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~----~LSGGerqR 182 (515)
++||+|++.+++ -|++|||.++.. . ..++++.++++..++.+ ..|+.++ +||||||||
T Consensus 557 i~~v~Q~~~lF~-gTIreNI~~g~~----~------~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQR 625 (711)
T TIGR00958 557 VALVGQEPVLFS-GSVRENIAYGLT----D------TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQR 625 (711)
T ss_pred ceEEecCccccc-cCHHHHHhcCCC----C------CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHH
Confidence 999999999886 599999987521 1 11244555666665543 2455554 599999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
++||||++++|+|||||||||+||+.+...+.+ .. ..+ ++|+|+++|++ +..+.||+|++|++|++++.
T Consensus 626 lalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~------~~TvIiItHrl--~~i~~aD~IivL~~G~ive~ 694 (711)
T TIGR00958 626 IAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRA------SRTVLLIAHRL--STVERADQILVLKKGSVVEM 694 (711)
T ss_pred HHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccC------CCeEEEEeccH--HHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999998888 22 122 38999999986 45677999999999999999
Q ss_pred cCccchHH
Q psy10236 263 GKRRDMLP 270 (515)
Q Consensus 263 G~~~~~~~ 270 (515)
|+.+++.+
T Consensus 695 Gt~~eL~~ 702 (711)
T TIGR00958 695 GTHKQLME 702 (711)
T ss_pred eCHHHHHh
Confidence 99988764
No 291
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=9e-40 Score=361.21 Aligned_cols=211 Identities=21% Similarity=0.303 Sum_probs=177.0
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
..++++|++++|+ +++.+|+|+|++++|||.++|+|+||||||||+|+|+|+++|++|+|.+||.++. ...+++.+
T Consensus 333 ~~I~~~~vsf~y~-~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 333 GAVEFDDVSFSYD-NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred CeEEEEEEEEEeC-CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 3699999999985 3456999999999999999999999999999999999999999999999999874 35678899
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-------cccCccc----CCChHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-------VLSTRVG----RLTTSELKRL 183 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~----~LSGGerqRv 183 (515)
+||+|++.+++. |++||+.++. +. ..++++.++++..|+.+ ..|+.++ +||||||||+
T Consensus 412 ~~v~Q~~~lf~~-Ti~~Ni~~~~----~~------~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRi 480 (588)
T PRK13657 412 AVVFQDAGLFNR-SIEDNIRVGR----PD------ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRL 480 (588)
T ss_pred EEEecCcccccc-cHHHHHhcCC----CC------CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHH
Confidence 999999998865 9999998742 11 01233444455554432 2344443 4999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||+++|++++||||||+||+.+...+.+.|+++.+ + +|+|+++|++ +..+.||||++|++|+++..|
T Consensus 481 alARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~------~tvIiitHr~--~~~~~~D~ii~l~~G~i~~~g 551 (588)
T PRK13657 481 AIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-G------RTTFIIAHRL--STVRNADRILVFDNGRVVESG 551 (588)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-C------CEEEEEEecH--HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999998753 3 7999999986 466789999999999999999
Q ss_pred CccchH
Q psy10236 264 KRRDML 269 (515)
Q Consensus 264 ~~~~~~ 269 (515)
+.+++.
T Consensus 552 ~~~~l~ 557 (588)
T PRK13657 552 SFDELV 557 (588)
T ss_pred CHHHHH
Confidence 988765
No 292
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-40 Score=317.88 Aligned_cols=210 Identities=24% Similarity=0.309 Sum_probs=185.2
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccceEEE-ecCCCCCCCCCHH
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRLVYV-RSQSFLSPELNVA 130 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i~yv-~q~~~~~~~lTv~ 130 (515)
..+++||||+|++|++++++|+|||||||+||+|+|++.|++|.|.++|...-. +.+-+.+++| .|...+...+.+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 357999999999999999999999999999999999999999999999986522 3445667776 5666788888899
Q ss_pred HHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhH
Q psy10236 131 QTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDT 210 (515)
Q Consensus 131 e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~ 210 (515)
|.+.....++..+ ...-+++.+.+.+.++|+...+.+++.||-|||.|+.||.+|+++|++|+|||||-|||..++
T Consensus 117 ds~~v~~~Iy~Ip----d~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq 192 (325)
T COG4586 117 DSLEVLKLIYEIP----DDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ 192 (325)
T ss_pred hhHHHHHHHHhCC----HHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHH
Confidence 9888766655432 356678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHHHHH
Q psy10236 211 FFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFA 273 (515)
Q Consensus 211 ~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~~f~ 273 (515)
..+.+.|++..++. +.||+.++|. .+++.++||||++++.|+++++|+.+++.+.|.
T Consensus 193 ~~ir~Flke~n~~~-----~aTVllTTH~-~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 193 ANIREFLKEYNEER-----QATVLLTTHI-FDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred HHHHHHHHHHHHhh-----CceEEEEecc-hhhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 99999999998753 4899999998 568999999999999999999999999887654
No 293
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7.6e-40 Score=360.34 Aligned_cols=214 Identities=20% Similarity=0.322 Sum_probs=178.8
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
..++++|+++.|+ +++++|+|+||++++||.+||+||||||||||+++|.|+++|++|+|.+||.++. ...+|+.+
T Consensus 327 ~~I~f~~vsf~y~-~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 327 GSIEFENVSFSYP-GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred CeEEEEEEEEEcC-CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence 3599999999984 3678999999999999999999999999999999999999999999999999884 45689999
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHH-----HHHHHHHcCCcccccCccc----CCChHHHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQ-----MGLLIEELGLTQVLSTRVG----RLTTSELKRLSI 185 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~v~----~LSGGerqRv~I 185 (515)
+||+|++.+|. -||+||+.++..- ..+++..+. +.+.++.+ ++..|+.++ +||||||||++|
T Consensus 406 ~~V~Qd~~LF~-~TI~~NI~~g~~~------at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge~G~~LSgGQrQrlai 476 (567)
T COG1132 406 GIVSQDPLLFS-GTIRENIALGRPD------ATDEEIEEALKLANAHEFIANL--PDGYDTIVGERGVNLSGGQRQRLAI 476 (567)
T ss_pred cEEcccceeec-ccHHHHHhcCCCC------CCHHHHHHHHHHhChHHHHHhC--cccccceecCCCccCCHHHHHHHHH
Confidence 99999999998 6999999986321 011222221 12233333 445677776 599999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCc
Q psy10236 186 ACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKR 265 (515)
Q Consensus 186 A~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~ 265 (515)
|||++++|++|+||||||+||+.+...+.+.++++. ++ +|+++++|.+. .+.. ||+|+||++|++++.|++
T Consensus 477 ARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~------rT~iiIaHRls-ti~~-aD~IiVl~~G~i~e~G~h 547 (567)
T COG1132 477 ARALLRNPPILILDEATSALDTETEALIQDALKKLL-KG------RTTLIIAHRLS-TIKN-ADRIIVLDNGRIVERGTH 547 (567)
T ss_pred HHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cC------CEEEEEeccHh-HHHh-CCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999876 33 68888888763 4444 999999999999999999
Q ss_pred cchHH
Q psy10236 266 RDMLP 270 (515)
Q Consensus 266 ~~~~~ 270 (515)
+++..
T Consensus 548 ~eLl~ 552 (567)
T COG1132 548 EELLA 552 (567)
T ss_pred HHHHH
Confidence 99874
No 294
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.4e-39 Score=352.31 Aligned_cols=221 Identities=15% Similarity=0.173 Sum_probs=178.5
Q ss_pred CcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-CeeEEEECCeeCCh----hhh
Q psy10236 36 FFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-KAFQVILNGHSIPL----NAL 110 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-~~G~I~~~G~~~~~----~~~ 110 (515)
..++|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+.++ ++|+|.++|+++.. ...
T Consensus 257 ~~~~l~~~~l~~~~--~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~ 334 (490)
T PRK10938 257 NEPRIVLNNGVVSY--NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDI 334 (490)
T ss_pred CCceEEEeceEEEE--CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHH
Confidence 34689999999987 456799999999999999999999999999999999998775 69999999987521 124
Q ss_pred ccceEEEecCCCCCCC--CCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-cccCcccCCChHHHHHHHHHH
Q psy10236 111 KRRLVYVRSQSFLSPE--LNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-VLSTRVGRLTTSELKRLSIAC 187 (515)
Q Consensus 111 ~~~i~yv~q~~~~~~~--lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSGGerqRv~IA~ 187 (515)
++.++|++|++.+++. .++.+++.+................+++++++++.+||.+ ..++++++|||||||||+||+
T Consensus 335 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~ 414 (490)
T PRK10938 335 KKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVR 414 (490)
T ss_pred HhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHH
Confidence 5679999998755443 4676666543210000000011223457889999999987 889999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHh-hccEEEEEeCCeEEEecC
Q psy10236 188 CLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFT-MISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 188 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~-~~Drv~vL~~G~iv~~G~ 264 (515)
||+.+|++|||||||+|||+.++..+.+.|+++++++ +.|||+++|+. +++.+ +||++++|++|++++.-.
T Consensus 415 al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~-----~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 415 ALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEG-----ETQLLFVSHHA-EDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcC-----CcEEEEEecch-hhhhhhhheeEEEecCCceEEeec
Confidence 9999999999999999999999999999999998765 25689999985 46766 599999999999887643
No 295
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.7e-39 Score=333.36 Aligned_cols=188 Identities=18% Similarity=0.241 Sum_probs=166.4
Q ss_pred EEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhh
Q psy10236 72 IMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVT 150 (515)
Q Consensus 72 IiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~ 150 (515)
|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++|+..+++.+||.||+.+....+.. ...+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~----~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKV----PRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCC----CHHH
Confidence 689999999999999999999999999999998743 23467899999999999999999999987643321 1233
Q ss_pred HHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCC
Q psy10236 151 TSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAG 230 (515)
Q Consensus 151 ~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~ 230 (515)
.+++++++++.+||.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++. +
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~-----g 151 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL-----G 151 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-----C
Confidence 45678899999999999999999999999999999999999999999999999999999999999999997652 3
Q ss_pred cEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 231 KMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 231 ~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+|+|+++|++ .++.++|||+++|++|+++..|+++++.
T Consensus 152 ~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 152 ITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 8999999985 5789999999999999999999988775
No 296
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.5e-39 Score=358.32 Aligned_cols=213 Identities=18% Similarity=0.323 Sum_probs=181.2
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
..++++|++++|+..++.+|+|+|+++++||.++|+|+||||||||+++|+|+++|++|+|.+||.++. ...+++.+
T Consensus 329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i 408 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQV 408 (571)
T ss_pred CeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhc
Confidence 369999999998544567999999999999999999999999999999999999999999999999873 35678899
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccc-------ccCccc----CCChHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV-------LSTRVG----RLTTSELKRL 183 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v~----~LSGGerqRv 183 (515)
+|++|++.+++. |++|||.++.. . ...++++.++++..|+.+. .|+.++ +||||||||+
T Consensus 409 ~~v~Q~~~lf~~-Ti~~Ni~~~~~----~-----~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRi 478 (571)
T TIGR02203 409 ALVSQDVVLFND-TIANNIAYGRT----E-----QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRL 478 (571)
T ss_pred eEEccCcccccc-cHHHHHhcCCC----C-----CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHH
Confidence 999999988765 99999986521 0 1123456666777666432 345554 4999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+||||++++|++++|||||++||..+...+.+.|+++++ + +|+|+++|++ ...+.||+|++|++|+++..|
T Consensus 479 aLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~-~------~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g 549 (571)
T TIGR02203 479 AIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-G------RTTLVIAHRL--STIEKADRIVVMDDGRIVERG 549 (571)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC-C------CEEEEEehhh--HHHHhCCEEEEEeCCEEEeeC
Confidence 999999999999999999999999999999999998854 2 7999999986 567889999999999999999
Q ss_pred CccchH
Q psy10236 264 KRRDML 269 (515)
Q Consensus 264 ~~~~~~ 269 (515)
+.+++.
T Consensus 550 ~~~~l~ 555 (571)
T TIGR02203 550 THNELL 555 (571)
T ss_pred CHHHHH
Confidence 988875
No 297
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.9e-41 Score=299.55 Aligned_cols=205 Identities=17% Similarity=0.259 Sum_probs=180.3
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccceEE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRLVY 116 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i~y 116 (515)
++++++.+ ..++.++|+|+||.+++||..+|.||||||||||+|+++.+.+|++|++++.|++++ .+.+|.+++|
T Consensus 4 le~kq~~y--~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY 81 (223)
T COG4619 4 LELKQVGY--LAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSY 81 (223)
T ss_pred hHHHHHHh--hcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHH
Confidence 45666654 346778999999999999999999999999999999999999999999999999984 3578999999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHHHHHhCCCE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLMSHADI 195 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~aL~~~p~l 195 (515)
+.|.+.+|+. ||++|+.|...++... ..+..+..+++++++. ...++++.+||||||||++|+|.|..-|+|
T Consensus 82 ~~Q~paLfg~-tVeDNlifP~~~r~rr------~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~I 154 (223)
T COG4619 82 CAQTPALFGD-TVEDNLIFPWQIRNRR------PDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKI 154 (223)
T ss_pred HHcCcccccc-chhhccccchHHhccC------CChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCce
Confidence 9999999987 9999999988766432 2345677899999996 457889999999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 196 LLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 196 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
|+||||||+||+.+++.|-++|.++.++. ...++.++|++ ++..+.+||++-+..|++
T Consensus 155 LLLDE~TsALD~~nkr~ie~mi~~~v~~q-----~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 155 LLLDEITSALDESNKRNIEEMIHRYVREQ-----NVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred EEecCchhhcChhhHHHHHHHHHHHhhhh-----ceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 99999999999999999999999997432 37899999986 478899999999998874
No 298
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.4e-39 Score=314.04 Aligned_cols=197 Identities=15% Similarity=0.207 Sum_probs=160.9
Q ss_pred EEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-------hhhccc
Q psy10236 41 QVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-------NALKRR 113 (515)
Q Consensus 41 ~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-------~~~~~~ 113 (515)
.+.|+.+.|. +++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.
T Consensus 2 ~~~~~~~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWG-SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecC-CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 5788888874 34679999999999999999999999999999999999999999999999987632 123467
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-----------cccCcccCCChHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-----------VLSTRVGRLTTSELKR 182 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~v~~LSGGerqR 182 (515)
++|++|++.++ ..|+.||+.+.... .. ++..++++.+++.+ ..++++.+||||||||
T Consensus 81 i~~~~q~~~~~-~~t~~~nl~~~~~~-------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qr 148 (218)
T cd03290 81 VAYAAQKPWLL-NATVEENITFGSPF-------NK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQR 148 (218)
T ss_pred EEEEcCCCccc-cccHHHHHhhcCcC-------CH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHH
Confidence 99999998877 57999999764211 01 12234455555533 2356788999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHH--HHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVE--FLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~--~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~ 258 (515)
|+|||+|+.+|+++||||||+|||+.++..+++ +++.+++.+ .|+|+++|++. .+ ..||++++|++|+
T Consensus 149 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~------~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 149 ICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDK------RTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCC------CEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 999999999999999999999999999999998 666665544 79999999864 45 5799999999884
No 299
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3.6e-39 Score=323.62 Aligned_cols=225 Identities=20% Similarity=0.253 Sum_probs=197.3
Q ss_pred CcCeEEEEeeEEeCCCC---------CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC
Q psy10236 36 FFPHLQVRGLEVPPSSK---------NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP 106 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~---------~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~ 106 (515)
..+.|+++|+.+.|+.. ...++++||+++++||.+||+|.||||||||-.+|.+++++. |+|.++|+++.
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~ 351 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDID 351 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccc
Confidence 34579999999876421 245799999999999999999999999999999999999887 99999999985
Q ss_pred h------hhhccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCCh
Q psy10236 107 L------NALKRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTT 177 (515)
Q Consensus 107 ~------~~~~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSG 177 (515)
. ...|+++-.|+|++ .+.|.|||.+-+.-+.....+. ....+..+++.+.|+++||+ ...+++|++.||
T Consensus 352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~--ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG 429 (534)
T COG4172 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPK--LSAAERDQRVIEALEEVGLDPATRNRYPHEFSG 429 (534)
T ss_pred ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCC--CCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence 2 24678899999997 5899999999998887766543 23566778899999999996 678999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCC
Q psy10236 178 SELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGG 257 (515)
Q Consensus 178 GerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G 257 (515)
|||||++|||||+.+|++++||||||+||-.-+.+++++|++|.++. +-+-++++|+. .-+..+||+|+||++|
T Consensus 430 GQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~-----~LsYLFISHDL-~VvrAl~~~viVm~~G 503 (534)
T COG4172 430 GQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKH-----GLSYLFISHDL-AVVRALCHRVIVMRDG 503 (534)
T ss_pred chhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHh-----CCeEEEEeccH-HHHHHhhceEEEEeCC
Confidence 99999999999999999999999999999999999999999998753 36778888874 5788999999999999
Q ss_pred eEEEecCccchH
Q psy10236 258 RTMYSGKRRDML 269 (515)
Q Consensus 258 ~iv~~G~~~~~~ 269 (515)
+||+.|+.++++
T Consensus 504 kiVE~G~~~~if 515 (534)
T COG4172 504 KIVEQGPTEAVF 515 (534)
T ss_pred EEeeeCCHHHHh
Confidence 999999999875
No 300
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.7e-39 Score=308.50 Aligned_cols=192 Identities=19% Similarity=0.208 Sum_probs=163.4
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEe
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVR 118 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~ 118 (515)
+|+++|++++| +++.++ ++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.... ++.++|++
T Consensus 1 ~l~~~~l~~~~--~~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~-~~~~~~~~ 76 (195)
T PRK13541 1 MLSLHQLQFNI--EQKNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA-KPYCTYIG 76 (195)
T ss_pred CeEEEEeeEEE--CCcEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh-hhhEEecc
Confidence 47899999987 344555 499999999999999999999999999999999999999999999874322 45689999
Q ss_pred cCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEE
Q psy10236 119 SQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlL 198 (515)
|+..+++.+||.||+.+...... ..+++.++++.+++.+..++++++||||||||++||||++.+|++++|
T Consensus 77 ~~~~~~~~~tv~~~l~~~~~~~~---------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lll 147 (195)
T PRK13541 77 HNLGLKLEMTVFENLKFWSEIYN---------SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLL 147 (195)
T ss_pred CCcCCCccCCHHHHHHHHHHhcc---------cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 98888889999999987543221 124567789999999889999999999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEE
Q psy10236 199 DCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRV 251 (515)
Q Consensus 199 DEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv 251 (515)
||||+|||+.++..+.+.|++..+++ +|+|+++|++. ....+|-+
T Consensus 148 DEP~~~LD~~~~~~l~~~l~~~~~~~------~tiii~sh~~~--~i~~~~~~ 192 (195)
T PRK13541 148 DEVETNLSKENRDLLNNLIVMKANSG------GIVLLSSHLES--SIKSAQIL 192 (195)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCC------CEEEEEeCCcc--ccchhhee
Confidence 99999999999999999998776555 89999999864 33446654
No 301
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.1e-39 Score=298.78 Aligned_cols=158 Identities=23% Similarity=0.369 Sum_probs=143.4
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hhhccceE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NALKRRLV 115 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~~~~~i~ 115 (515)
|+++|++++| +++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++
T Consensus 1 l~~~~l~~~~--~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRF--GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEE--CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 4789999987 35679999999999999999999999999999999999999999999999998743 22456788
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCE
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADI 195 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~l 195 (515)
|++| ||||||||++|||||+.+|++
T Consensus 79 ~~~q-------------------------------------------------------LS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 79 MVYQ-------------------------------------------------------LSVGERQMVEIARALARNARL 103 (163)
T ss_pred EEEe-------------------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 8887 999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEE
Q psy10236 196 LLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMY 261 (515)
Q Consensus 196 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~ 261 (515)
++|||||+|||+.++..+.+.|+++++++ .|+|+++|++ .++.++||++++|++|++++
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~~~~~~------~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRRLRAQG------VAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHCC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999997655 7999999985 46888999999999999875
No 302
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.7e-39 Score=355.89 Aligned_cols=212 Identities=20% Similarity=0.292 Sum_probs=176.7
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
..++++|++++|+.+++.+|+|+|+++++||.++|+||||||||||+++|+|+++|++|+|.+||+++. ...+++.+
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 391 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL 391 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence 469999999998644567999999999999999999999999999999999999999999999999873 34578889
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-------ccccCc----ccCCChHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-------QVLSTR----VGRLTTSELKRL 183 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~----v~~LSGGerqRv 183 (515)
+|++|++.+++. |++||+.++.. . ..++++.+.++..++. +..++. ..+||||||||+
T Consensus 392 ~~v~q~~~lf~~-ti~~Ni~~~~~----~------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi 460 (569)
T PRK10789 392 AVVSQTPFLFSD-TVANNIALGRP----D------ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRI 460 (569)
T ss_pred EEEccCCeeccc-cHHHHHhcCCC----C------CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHH
Confidence 999999998875 99999976421 1 0112334444444442 223333 346999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||+++|+++||||||++||+.+...+.+.|+++.+ + +|+|+++|++ +..+.||++++|++|+++..|
T Consensus 461 ~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~------~tii~itH~~--~~~~~~d~i~~l~~G~i~~~g 531 (569)
T PRK10789 461 SIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE-G------RTVIISAHRL--SALTEASEILVMQHGHIAQRG 531 (569)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhC-C------CEEEEEecch--hHHHcCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999998853 3 7899999986 355679999999999999999
Q ss_pred CccchH
Q psy10236 264 KRRDML 269 (515)
Q Consensus 264 ~~~~~~ 269 (515)
+.+++.
T Consensus 532 ~~~~l~ 537 (569)
T PRK10789 532 NHDQLA 537 (569)
T ss_pred CHHHHH
Confidence 988775
No 303
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2e-39 Score=311.39 Aligned_cols=193 Identities=20% Similarity=0.272 Sum_probs=155.8
Q ss_pred EEEEeeEEeCCCCC---cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEE
Q psy10236 40 LQVRGLEVPPSSKN---KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116 (515)
Q Consensus 40 L~v~~l~~~~~~~~---~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~y 116 (515)
++++||+++|..++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| +++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g----------~i~~ 70 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----------SIAY 70 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----------EEEE
Confidence 47899999874322 3699999999999999999999999999999999999999999999998 5999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHH-----HHHHHHHc--CCcccccCcccCCChHHHHHHHHHHHH
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQ-----MGLLIEEL--GLTQVLSTRVGRLTTSELKRLSIACCL 189 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~v~~LSGGerqRv~IA~aL 189 (515)
++|++.++ ..|+.||+.+..... .....+. +.+.++.+ |+....++.+.+||||||||++|||+|
T Consensus 71 ~~q~~~l~-~~t~~enl~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral 142 (204)
T cd03250 71 VSQEPWIQ-NGTIRENILFGKPFD-------EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAV 142 (204)
T ss_pred EecCchhc-cCcHHHHhccCCCcC-------HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 99998877 569999998743210 1111111 11222222 344456677889999999999999999
Q ss_pred HhCCCEEEEeCCCCCCChhhHHHHHH-HHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCe
Q psy10236 190 MSHADILLLDCPTVFMDIFDTFFLVE-FLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258 (515)
Q Consensus 190 ~~~p~lLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~ 258 (515)
+.+|++++|||||+|||+.++..+.+ +++++.++| +|||+++|++. .+.. ||++++|++|+
T Consensus 143 ~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~------~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 143 YSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNN------KTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCC------CEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 99999999999999999999999998 466665555 89999999864 4555 99999999985
No 304
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-39 Score=302.37 Aligned_cols=168 Identities=24% Similarity=0.396 Sum_probs=147.9
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceEE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLVY 116 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~y 116 (515)
++++|+++.|..+...+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999874222379999999999999999999999999999999999999999999999998742 345678999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
++|+..+++ .|+.||+ |||||||||+||++|+.+|+++
T Consensus 81 ~~~~~~~~~-~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 81 VPQDPFLFS-GTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EcCCchhcc-chHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 999987665 5888776 9999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCe
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~ 258 (515)
||||||+|||+.++..+.+.|+++++ + +|+|+++|++. ++.. ||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~~-~------~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALAK-G------KTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhcC-C------CEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 99999999999999999999999853 4 78999999864 5665 99999999885
No 305
>KOG0057|consensus
Probab=100.00 E-value=1.2e-39 Score=338.78 Aligned_cols=210 Identities=20% Similarity=0.334 Sum_probs=179.8
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i~ 115 (515)
.++++|++++|. .++++|+++||+|++||-+||+|+|||||||++|+|.+... .+|+|++||+++. .+.+|+.||
T Consensus 351 ~I~F~dV~f~y~-~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 351 SIEFDDVHFSYG-PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred cEEEEeeEEEeC-CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhee
Confidence 499999999984 44559999999999999999999999999999999999999 9999999999984 456899999
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-------cccCcccC----CChHHHHHHH
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-------VLSTRVGR----LTTSELKRLS 184 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~----LSGGerqRv~ 184 (515)
||||+..+|.+ ||.+|+.++.. ....+++.++.++.|+.+ ...+.+|+ |||||||||+
T Consensus 429 ~VPQd~~LFnd-TIl~NI~YGn~----------sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvs 497 (591)
T KOG0057|consen 429 VVPQDSVLFND-TILYNIKYGNP----------SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVS 497 (591)
T ss_pred EeCCcccccch-hHHHHhhcCCC----------CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHH
Confidence 99999988865 99999987531 112245556666666644 34444554 9999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
||||++.+|+|+++|||||.||..+..++++.+++.. . ++|+|++.|.. ....-||+|++|++|++...|+
T Consensus 498 laRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~------~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gt 568 (591)
T KOG0057|consen 498 LARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-S------GRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGT 568 (591)
T ss_pred HHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-C------CCeEEEEEecc--hhHhcCCEEEEEECCeeEEecc
Confidence 9999999999999999999999999999999999842 2 48999999964 5788899999999999999999
Q ss_pred ccchHH
Q psy10236 265 RRDMLP 270 (515)
Q Consensus 265 ~~~~~~ 270 (515)
.++++.
T Consensus 569 h~ell~ 574 (591)
T KOG0057|consen 569 HSELLA 574 (591)
T ss_pred HHHHhh
Confidence 998863
No 306
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-39 Score=348.59 Aligned_cols=219 Identities=19% Similarity=0.261 Sum_probs=181.5
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hhhcc
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NALKR 112 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~~~~ 112 (515)
.++++++|+++.+ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++
T Consensus 248 ~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 248 EVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred CcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 3579999999852 358999999999999999999999999999999999999999999999988742 12356
Q ss_pred ceEEEecCC---CCCCCCCHHHHHHHHh--hcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHH
Q psy10236 113 RLVYVRSQS---FLSPELNVAQTLTFYS--HLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIA 186 (515)
Q Consensus 113 ~i~yv~q~~---~~~~~lTv~e~l~~~~--~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA 186 (515)
.++|++|+. .+++.+|+.+|..+.. ..............++++.++++.+++. +..++++++|||||||||+||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 403 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIG 403 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHH
Confidence 799999974 4788899887742211 0000000001123346678899999995 568999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCcc
Q psy10236 187 CCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRR 266 (515)
Q Consensus 187 ~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~ 266 (515)
++|+.+|+||||||||+|||+.++..+.+.|++++++| .|||+++|+. .++.++|||+++|++|+++..++++
T Consensus 404 ~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~------~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 404 RWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKD------KGIIIISSEM-PELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCC------CEEEEECCCh-HHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999998766 8999999985 5788999999999999999877654
No 307
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2e-39 Score=364.79 Aligned_cols=213 Identities=16% Similarity=0.277 Sum_probs=177.4
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
..++++|++++|+.+++.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++|+|.+||.++. ...+++.+
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i 533 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM 533 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence 469999999998645567999999999999999999999999999999999999999999999999874 35678899
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCC-----------cccccCcccCCChHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGL-----------TQVLSTRVGRLTTSELKRL 183 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-----------~~~~~~~v~~LSGGerqRv 183 (515)
+||+|++.+++. |++||+.+.. +. ...+++.++++..++ +........+||||||||+
T Consensus 534 ~~v~q~~~lf~~-ti~eNi~~~~----~~------~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 534 GVVLQENVLFSR-SIRDNIALCN----PG------APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred eEEccCCeehhh-hHHHHHhcCC----CC------CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 999999988864 9999998642 11 011233334444443 3333333446999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||+++|++|||||||++||+.+...+.+.|+++.+ + +|+|+++|++. ..+.||+|++|++|++++.|
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~------~t~i~itH~~~--~~~~~d~ii~l~~G~i~~~g 673 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRNMREICR-G------RTVIIIAHRLS--TVRACDRIIVLEKGQIAESG 673 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhC-C------CEEEEEeCChH--HHHhCCEEEEEeCCEEEEeC
Confidence 999999999999999999999999999999999999853 3 79999999863 45679999999999999999
Q ss_pred CccchHH
Q psy10236 264 KRRDMLP 270 (515)
Q Consensus 264 ~~~~~~~ 270 (515)
+.+++.+
T Consensus 674 ~~~~l~~ 680 (694)
T TIGR01846 674 RHEELLA 680 (694)
T ss_pred CHHHHHH
Confidence 9888753
No 308
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.6e-40 Score=300.94 Aligned_cols=222 Identities=15% Similarity=0.217 Sum_probs=195.2
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECC-eeCCh----hhhcc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNG-HSIPL----NALKR 112 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G-~~~~~----~~~~~ 112 (515)
+.|+++|+++++ ++..+|+|+||++.+||+-+|||||||||||+|++|+|..+|+.|+++++| .++.. ...+.
T Consensus 4 ~iL~~~~vsVsF--~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 4 IILYLDGVSVSF--GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred ceEEEeceEEEE--cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 579999999987 788899999999999999999999999999999999999999999999999 77642 22466
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCC----CCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHH
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPK----HSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACC 188 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~----~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~a 188 (515)
.||--+|.+..|+++||+|||.++.+....-. .....+.+.+++++|+..||.+.++...+.||.||||++.|++.
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMl 161 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGML 161 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhhee
Confidence 78999999999999999999998764322100 01123455689999999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
++++|++|+||||++|+-.....+.-++|+.++.. .+|+++-|+ +..+.+++|+|.||++|.+...|+.+++
T Consensus 162 l~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~-------hsilVVEHD-M~Fvr~~A~~VTVlh~G~VL~EGsld~v 233 (249)
T COG4674 162 LAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGK-------HSILVVEHD-MGFVREIADKVTVLHEGSVLAEGSLDEV 233 (249)
T ss_pred eccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcC-------ceEEEEecc-HHHHHHhhheeEEEeccceeecccHHHh
Confidence 99999999999999999999999999999999864 577777776 6788999999999999999999999876
Q ss_pred H
Q psy10236 269 L 269 (515)
Q Consensus 269 ~ 269 (515)
.
T Consensus 234 ~ 234 (249)
T COG4674 234 Q 234 (249)
T ss_pred h
Confidence 4
No 309
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.2e-39 Score=356.08 Aligned_cols=212 Identities=17% Similarity=0.303 Sum_probs=177.0
Q ss_pred CeEEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccc
Q psy10236 38 PHLQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~ 113 (515)
+.++++|++++|+.+ ++.+|+|+||+++|||.++|+|+||||||||+|+|+|+++|++|+|.+||.+++ ...+++.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 469999999998532 267999999999999999999999999999999999999999999999999874 3457788
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccc-------ccCcc----cCCChHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV-------LSTRV----GRLTTSELKR 182 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v----~~LSGGerqR 182 (515)
++|++|++.+++. |++||+.++. +. ..++++.++++..|+.+. .++.+ .+||||||||
T Consensus 416 i~~~~Q~~~lf~~-Ti~~Ni~~~~----~~------~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qr 484 (576)
T TIGR02204 416 MALVPQDPVLFAA-SVMENIRYGR----PD------ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQR 484 (576)
T ss_pred ceEEccCCccccc-cHHHHHhcCC----CC------CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHH
Confidence 9999999988765 9999997642 11 012345555565555322 23333 3599999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
++||||++++|++|+|||||++||+.++..+.+.|+++.+ + +|+|+++|++ +....||||++|++|+++..
T Consensus 485 l~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~-~------~t~IiitH~~--~~~~~~d~vi~l~~g~~~~~ 555 (576)
T TIGR02204 485 IAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK-G------RTTLIIAHRL--ATVLKADRIVVMDQGRIVAQ 555 (576)
T ss_pred HHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC-C------CEEEEEecch--HHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999999999999853 3 7899999986 45678999999999999999
Q ss_pred cCccchH
Q psy10236 263 GKRRDML 269 (515)
Q Consensus 263 G~~~~~~ 269 (515)
|+.+++.
T Consensus 556 g~~~~l~ 562 (576)
T TIGR02204 556 GTHAELI 562 (576)
T ss_pred ecHHHHH
Confidence 9987764
No 310
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-38 Score=348.52 Aligned_cols=211 Identities=20% Similarity=0.263 Sum_probs=177.3
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEe
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVR 118 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~ 118 (515)
+|+++|++++| +++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|. ..++|++
T Consensus 1 ml~i~~ls~~~--~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~i~~~~ 70 (530)
T PRK15064 1 MLSTANITMQF--GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN--------ERLGKLR 70 (530)
T ss_pred CEEEEEEEEEe--CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--------CEEEEEe
Confidence 48999999987 4567999999999999999999999999999999999999999999999873 3599999
Q ss_pred cCCCCCCCCCHHHHHHHHhh-c----------CCCCC-CCc----------------hhhHHHHHHHHHHHcCCcccc-c
Q psy10236 119 SQSFLSPELNVAQTLTFYSH-L----------RRPPK-HSI----------------KVTTSEQMGLLIEELGLTQVL-S 169 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~-~----------~~~~~-~~~----------------~~~~~~~v~~~l~~lgL~~~~-~ 169 (515)
|+..+++.+||.|++.+... . ..... ... ..+.++++.++++.+||.+.. +
T Consensus 71 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 150 (530)
T PRK15064 71 QDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHY 150 (530)
T ss_pred ccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhc
Confidence 99989999999999976421 0 00000 000 012235678899999997644 5
Q ss_pred CcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhcc
Q psy10236 170 TRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMIS 249 (515)
Q Consensus 170 ~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~D 249 (515)
+++++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .+ .|||+++|+. ..+.++||
T Consensus 151 ~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~------~tiiivsHd~-~~~~~~~d 220 (530)
T PRK15064 151 GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RN------STMIIISHDR-HFLNSVCT 220 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CC------CeEEEEeCCH-HHHHhhcc
Confidence 78999999999999999999999999999999999999999999999864 34 7899999985 47889999
Q ss_pred EEEEEeCCeE-EEecCccchH
Q psy10236 250 RVLLVSGGRT-MYSGKRRDML 269 (515)
Q Consensus 250 rv~vL~~G~i-v~~G~~~~~~ 269 (515)
++++|++|++ ++.|++++..
T Consensus 221 ~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 221 HMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred eEEEEeCCEEEEecCCHHHHH
Confidence 9999999999 4888887654
No 311
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.3e-39 Score=353.17 Aligned_cols=213 Identities=17% Similarity=0.265 Sum_probs=178.7
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEE
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~y 116 (515)
.++|+++||+++|. +++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.+++. ..++|
T Consensus 4 ~~~l~i~~l~~~y~-~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~--------~~i~~ 74 (556)
T PRK11819 4 QYIYTMNRVSKVVP-PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG--------IKVGY 74 (556)
T ss_pred cEEEEEeeEEEEeC-CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--------CEEEE
Confidence 35899999999873 1577999999999999999999999999999999999999999999999752 46999
Q ss_pred EecCCCCCCCCCHHHHHHHHhh-cC-------------CCCCCCc------------------hhhHHHHHHHHHHHcCC
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSH-LR-------------RPPKHSI------------------KVTTSEQMGLLIEELGL 164 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~-~~-------------~~~~~~~------------------~~~~~~~v~~~l~~lgL 164 (515)
++|++.+++.+||.||+.+... .+ ....... ..+..+++.++++.+||
T Consensus 75 v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 154 (556)
T PRK11819 75 LPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC 154 (556)
T ss_pred EecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC
Confidence 9999999999999999987421 00 0000000 00123567889999999
Q ss_pred cccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHH
Q psy10236 165 TQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEI 244 (515)
Q Consensus 165 ~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i 244 (515)
.. .++++++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||+++|+. .++
T Consensus 155 ~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---------~tviiisHd~-~~~ 223 (556)
T PRK11819 155 PP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---------GTVVAVTHDR-YFL 223 (556)
T ss_pred Cc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---------CeEEEEeCCH-HHH
Confidence 64 799999999999999999999999999999999999999999999999999762 4888888885 578
Q ss_pred HhhccEEEEEeCCeEE-EecCccchH
Q psy10236 245 FTMISRVLLVSGGRTM-YSGKRRDML 269 (515)
Q Consensus 245 ~~~~Drv~vL~~G~iv-~~G~~~~~~ 269 (515)
..+||+|++|++|+++ +.|+.++..
T Consensus 224 ~~~~d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 224 DNVAGWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred HhhcCeEEEEeCCEEEEecCCHHHHH
Confidence 8999999999999986 778776543
No 312
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-39 Score=313.20 Aligned_cols=188 Identities=19% Similarity=0.279 Sum_probs=168.4
Q ss_pred CeEEEEeeEEeCCCCC-------cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhh
Q psy10236 38 PHLQVRGLEVPPSSKN-------KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNAL 110 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~-------~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~ 110 (515)
++++++||++.|..+. ..+++||||+|++||+++|+|.||||||||-|+|.|+.+|++|+|.++|+++....
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~- 81 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS- 81 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence 5799999999875332 37899999999999999999999999999999999999999999999999863221
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHHHH
Q psy10236 111 KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCL 189 (515)
Q Consensus 111 ~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~aL 189 (515)
+.+..+++.++|+.+||. +.+++.+++||||||||+.|||||
T Consensus 82 -------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARAL 124 (268)
T COG4608 82 -------------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARAL 124 (268)
T ss_pred -------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHH
Confidence 134557799999999996 589999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 190 MSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 190 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+.+|+++++|||+|+||...+.+++++|++++++- +.+.++++|+. ..+..+|||+.||+.|++|+.|+.+++.
T Consensus 125 al~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~-----~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~ 198 (268)
T COG4608 125 ALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL-----GLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVF 198 (268)
T ss_pred hhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHh-----CCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHh
Confidence 99999999999999999999999999999998763 37888889874 5788999999999999999999999886
No 313
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=6.5e-39 Score=353.77 Aligned_cols=215 Identities=19% Similarity=0.253 Sum_probs=175.6
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
..++++|++++|+ +++.+|+|+|+++++||.+||+||||||||||+++|+|.++|++|+|.+||.++. ...+++.+
T Consensus 333 ~~i~~~~v~~~y~-~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 411 (585)
T TIGR01192 333 GAVEFRHITFEFA-NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSI 411 (585)
T ss_pred CeEEEEEEEEECC-CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 4699999999984 3356899999999999999999999999999999999999999999999999874 34578899
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHH-----HHHHHHHc--CCcccccCcccCCChHHHHHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQ-----MGLLIEEL--GLTQVLSTRVGRLTTSELKRLSIAC 187 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~v~~LSGGerqRv~IA~ 187 (515)
+||+|++.+++ .|++||+.++.. . ..+++..+. ..+.+..+ |++...+....+||||||||++|||
T Consensus 412 ~~v~q~~~lf~-~ti~~Ni~~~~~----~--~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lAR 484 (585)
T TIGR01192 412 ATVFQDAGLFN-RSIRENIRLGRE----G--ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIAR 484 (585)
T ss_pred EEEccCCccCc-ccHHHHHhcCCC----C--CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 99999998886 599999987521 1 011111111 12223222 4444445556679999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccc
Q psy10236 188 CLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRD 267 (515)
Q Consensus 188 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~ 267 (515)
||+.+|++|||||||+|||+.++..+.+.|+++.+ + +|+|+++|++. ....||+|++|++|+++..|+.++
T Consensus 485 all~~p~ililDEpts~LD~~~~~~i~~~l~~~~~-~------~tvI~isH~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 555 (585)
T TIGR01192 485 AILKNAPILVLDEATSALDVETEARVKNAIDALRK-N------RTTFIIAHRLS--TVRNADLVLFLDQGRLIEKGSFQE 555 (585)
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-C------CEEEEEEcChH--HHHcCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999998853 3 79999999863 446799999999999999999877
Q ss_pred hH
Q psy10236 268 ML 269 (515)
Q Consensus 268 ~~ 269 (515)
+.
T Consensus 556 l~ 557 (585)
T TIGR01192 556 LI 557 (585)
T ss_pred HH
Confidence 65
No 314
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=9e-39 Score=309.19 Aligned_cols=194 Identities=16% Similarity=0.160 Sum_probs=161.9
Q ss_pred ceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEE-ECCeeCChhhhccceEEEecCCCCCCCCCHHHHH
Q psy10236 55 CFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVI-LNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTL 133 (515)
Q Consensus 55 ~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~-~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l 133 (515)
.+|+||||++++||+++|+||||||||||+++|+|+.+|++|+|. ++|..+. +.+...+++.+|+.||+
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~----------~~~~~~l~~~ltv~enl 70 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP----------LGANSFILPGLTGEENA 70 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec----------cccccccCCcCcHHHHH
Confidence 379999999999999999999999999999999999999999997 7775431 22456688999999999
Q ss_pred HHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHH
Q psy10236 134 TFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFL 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i 213 (515)
.+....+... .. +..+.+.+.++|+...++++++||||||||++||+||+.+|+++||||||+++|+.++..+
T Consensus 71 ~~~~~~~~~~----~~---~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~ 143 (213)
T PRK15177 71 RMMASLYGLD----GD---EFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRM 143 (213)
T ss_pred HHHHHHcCCC----HH---HHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHH
Confidence 9876543211 11 1223345667888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHHHHH
Q psy10236 214 VEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFA 273 (515)
Q Consensus 214 ~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~~f~ 273 (515)
.+.|.+..++ +++|+++|++ .++.++||++++|++|++++.++.+++..+++
T Consensus 144 ~~~l~~~~~~-------~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 195 (213)
T PRK15177 144 QAALACQLQQ-------KGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFE 195 (213)
T ss_pred HHHHHHHhhC-------CcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHH
Confidence 9988654432 5688888875 46788999999999999999999988876654
No 315
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=348.39 Aligned_cols=203 Identities=16% Similarity=0.234 Sum_probs=176.8
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYV 117 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv 117 (515)
++|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|. +.++|+
T Consensus 318 ~~l~~~~l~~~~--~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--------~~i~~~ 387 (530)
T PRK15064 318 NALEVENLTKGF--DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN--------ANIGYY 387 (530)
T ss_pred ceEEEEeeEEee--CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc--------eEEEEE
Confidence 589999999987 4567999999999999999999999999999999999999999999999873 469999
Q ss_pred ecCCC--CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 118 RSQSF--LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 118 ~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
+|+.. +++.+|+.|++.+.. .. ...+++++++++.+|+. +..++++++|||||||||+||++|+.+|+
T Consensus 388 ~q~~~~~~~~~~t~~~~~~~~~---~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~ 458 (530)
T PRK15064 388 AQDHAYDFENDLTLFDWMSQWR---QE------GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPN 458 (530)
T ss_pred cccccccCCCCCcHHHHHHHhc---cC------CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCC
Confidence 99863 566799999986421 11 11235678899999994 67899999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEE-EecCccchH
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTM-YSGKRRDML 269 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv-~~G~~~~~~ 269 (515)
+|||||||+|||+.++..+.+.|+++ + .|||+++|++ .++..+|||+++|++|+++ +.|+++++.
T Consensus 459 lllLDEPt~~LD~~~~~~l~~~l~~~---~------~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 459 VLVMDEPTNHMDMESIESLNMALEKY---E------GTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHC---C------CEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 99999999999999999999999876 2 4889999985 5788899999999999998 788876653
No 316
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.7e-38 Score=317.89 Aligned_cols=201 Identities=17% Similarity=0.279 Sum_probs=163.4
Q ss_pred CCCcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccc
Q psy10236 34 PEFFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRR 113 (515)
Q Consensus 34 ~~~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~ 113 (515)
+...+.|+++|+++. ++.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 34 ~~~~~~l~i~nls~~----~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----------~ 99 (282)
T cd03291 34 SSDDNNLFFSNLCLV----GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----------R 99 (282)
T ss_pred CCCCCeEEEEEEEEe----cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----------E
Confidence 344567999999984 35699999999999999999999999999999999999999999999988 3
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-----------cccCcccCCChHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-----------VLSTRVGRLTTSELKR 182 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~v~~LSGGerqR 182 (515)
++|++|+..+++. ||.||+.+..... . .++.+.++.+++.+ ..++.+.+||||||||
T Consensus 100 i~yv~q~~~l~~~-tv~enl~~~~~~~-------~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qr 167 (282)
T cd03291 100 ISFSSQFSWIMPG-TIKENIIFGVSYD-------E----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRAR 167 (282)
T ss_pred EEEEeCccccccc-CHHHHhhcccccC-------H----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHH
Confidence 8999999888775 9999998642110 0 11222333334322 2334567899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHH-HHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEE
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFL-RGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMY 261 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L-~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~ 261 (515)
++|||+|+.+|++|||||||+|||+.++..+.+.+ +.++ ++ .|||+++|++. ++ ..||++++|++|++++
T Consensus 168 v~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~------~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~ 238 (282)
T cd03291 168 ISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-AN------KTRILVTSKME-HL-KKADKILILHEGSSYF 238 (282)
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CC------CEEEEEeCChH-HH-HhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999865 5554 34 78999999864 44 5799999999999999
Q ss_pred ecCccchH
Q psy10236 262 SGKRRDML 269 (515)
Q Consensus 262 ~G~~~~~~ 269 (515)
.|+++++.
T Consensus 239 ~g~~~~~~ 246 (282)
T cd03291 239 YGTFSELQ 246 (282)
T ss_pred ECCHHHHH
Confidence 99987764
No 317
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2e-38 Score=295.04 Aligned_cols=163 Identities=21% Similarity=0.312 Sum_probs=144.6
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEec
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRS 119 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q 119 (515)
++++|++++|+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +.++|++|
T Consensus 1 i~~~~~~~~~~-~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~--------~~i~~~~q 71 (166)
T cd03223 1 IELENLSLATP-DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--------EDLLFLPQ 71 (166)
T ss_pred CEEEEEEEEcC-CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC--------ceEEEECC
Confidence 46899999874 3357999999999999999999999999999999999999999999999873 57999999
Q ss_pred CCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEe
Q psy10236 120 QSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLD 199 (515)
Q Consensus 120 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLD 199 (515)
+..++ ..|+.||+.+. .+.+||||||||++|||||+.+|++++||
T Consensus 72 ~~~~~-~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllD 116 (166)
T cd03223 72 RPYLP-LGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLD 116 (166)
T ss_pred CCccc-cccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 98754 67999998642 35689999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCC
Q psy10236 200 CPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGG 257 (515)
Q Consensus 200 EPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G 257 (515)
|||+|||+.++..+.+.|+++ + +|+|+++|++. ....||++++|++|
T Consensus 117 EPt~~LD~~~~~~l~~~l~~~---~------~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 117 EATSALDEESEDRLYQLLKEL---G------ITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred CCccccCHHHHHHHHHHHHHh---C------CEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 999999999999999999976 3 68999999863 45799999999765
No 318
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3e-38 Score=311.97 Aligned_cols=181 Identities=22% Similarity=0.301 Sum_probs=155.5
Q ss_pred eeeeeEEEEe-----cCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHH
Q psy10236 56 FVQGVSFEVK-----GSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVA 130 (515)
Q Consensus 56 iL~~vs~~v~-----~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~ 130 (515)
.++|+++++. +||+++|+||||||||||+++|+|+.+|++|+|.++|. .++|++|+....+.+||.
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~---------~i~~~~q~~~~~~~~tv~ 79 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD---------TVSYKPQYIKADYEGTVR 79 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc---------eEEEecccccCCCCCCHH
Confidence 5677777776 79999999999999999999999999999999999985 589999998777889999
Q ss_pred HHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhH
Q psy10236 131 QTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDT 210 (515)
Q Consensus 131 e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~ 210 (515)
|++.+...... .......++++.+||.+..++++++|||||||||+||+||+.+|+++||||||++||+.++
T Consensus 80 e~l~~~~~~~~--------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~ 151 (246)
T cd03237 80 DLLSSITKDFY--------THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQR 151 (246)
T ss_pred HHHHHHhhhcc--------ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 99876432111 0123456789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 211 FFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 211 ~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
..+.+.|++++++. ++|||+++|+. .++..+||++++|+++..
T Consensus 152 ~~l~~~l~~~~~~~-----~~tiiivsHd~-~~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 152 LMASKVIRRFAENN-----EKTAFVVEHDI-IMIDYLADRLIVFEGEPS 194 (246)
T ss_pred HHHHHHHHHHHHhc-----CCEEEEEeCCH-HHHHHhCCEEEEEcCCCe
Confidence 99999999997642 38999999985 467889999999966433
No 319
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=9.5e-39 Score=329.05 Aligned_cols=225 Identities=23% Similarity=0.333 Sum_probs=191.3
Q ss_pred CCCcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhh
Q psy10236 34 PEFFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNAL 110 (515)
Q Consensus 34 ~~~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~ 110 (515)
|++...|.|+++++..+..++++|+++||++.+||.+||+||||||||||.|+|.|..+|.+|.|++||.++. .+.+
T Consensus 329 P~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~l 408 (580)
T COG4618 329 PAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQL 408 (580)
T ss_pred CCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHh
Confidence 5555689999999987767789999999999999999999999999999999999999999999999999884 3567
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhh---HHHHHHHHHHHcCCcccccCcccC----CChHHHHHH
Q psy10236 111 KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVT---TSEQMGLLIEELGLTQVLSTRVGR----LTTSELKRL 183 (515)
Q Consensus 111 ~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~---~~~~v~~~l~~lgL~~~~~~~v~~----LSGGerqRv 183 (515)
-+.|||+||+-.+|+. ||.|||.-+.. ... ..+.- ....+.+++ +.+.+-+|+.+|+ ||||||||+
T Consensus 409 G~hiGYLPQdVeLF~G-TIaeNIaRf~~---~~d-~~kIieAA~lAgvHelI--l~lP~GYdT~iG~~G~~LSgGQRQRI 481 (580)
T COG4618 409 GRHIGYLPQDVELFDG-TIAENIARFGE---EAD-PEKVIEAARLAGVHELI--LRLPQGYDTRIGEGGATLSGGQRQRI 481 (580)
T ss_pred ccccCcCcccceecCC-cHHHHHHhccc---cCC-HHHHHHHHHHcChHHHH--HhCcCCccCccCCCCCCCCchHHHHH
Confidence 7899999999999987 99999964321 100 00010 111233333 4567889999986 999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
++||||..+|.+++||||-++||......+.+.|.+++++| .|+|+++|.| .+...+|+|++|++|++-.+|
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG------~~vvviaHRP--s~L~~~Dkilvl~~G~~~~FG 553 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARG------GTVVVIAHRP--SALASVDKILVLQDGRIAAFG 553 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcC------CEEEEEecCH--HHHhhcceeeeecCChHHhcC
Confidence 99999999999999999999999999999999999999887 7888889987 588999999999999999999
Q ss_pred CccchHHHHH
Q psy10236 264 KRRDMLPYFA 273 (515)
Q Consensus 264 ~~~~~~~~f~ 273 (515)
+.+|++....
T Consensus 554 ~r~eVLa~~~ 563 (580)
T COG4618 554 PREEVLAKVL 563 (580)
T ss_pred CHHHHHHHhc
Confidence 9999987543
No 320
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.6e-38 Score=345.67 Aligned_cols=213 Identities=15% Similarity=0.221 Sum_probs=176.8
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYV 117 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv 117 (515)
.+++++|++++|. +++.+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.+++ +..++|+
T Consensus 3 ~~i~~~nls~~~~-~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~--------~~~i~~v 73 (552)
T TIGR03719 3 YIYTMNRVSKVVP-PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP--------GIKVGYL 73 (552)
T ss_pred EEEEEeeEEEecC-CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC--------CCEEEEE
Confidence 4799999999883 256799999999999999999999999999999999999999999999975 2469999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhc-CC-----------CCCCCch--------------------hhHHHHHHHHHHHcCCc
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHL-RR-----------PPKHSIK--------------------VTTSEQMGLLIEELGLT 165 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~-~~-----------~~~~~~~--------------------~~~~~~v~~~l~~lgL~ 165 (515)
+|++.+++.+||.||+.+.... +. ....... .....++.++++.+|+.
T Consensus 74 ~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 153 (552)
T TIGR03719 74 PQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP 153 (552)
T ss_pred eccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC
Confidence 9999999999999999874311 00 0000000 00124567788889996
Q ss_pred ccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHH
Q psy10236 166 QVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIF 245 (515)
Q Consensus 166 ~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~ 245 (515)
. .++++++|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ + .|||+++|+. ..+.
T Consensus 154 ~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~------~tvIiisHd~-~~~~ 222 (552)
T TIGR03719 154 P-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---P------GTVVAVTHDR-YFLD 222 (552)
T ss_pred c-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---C------CeEEEEeCCH-HHHH
Confidence 4 68899999999999999999999999999999999999999999999999875 2 4888888875 5788
Q ss_pred hhccEEEEEeCCeEE-EecCccchHH
Q psy10236 246 TMISRVLLVSGGRTM-YSGKRRDMLP 270 (515)
Q Consensus 246 ~~~Drv~vL~~G~iv-~~G~~~~~~~ 270 (515)
.+||++++|++|+++ +.|+.++..+
T Consensus 223 ~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 223 NVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred hhcCeEEEEECCEEEEecCCHHHHHH
Confidence 899999999999976 7788776543
No 321
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.3e-38 Score=342.61 Aligned_cols=204 Identities=16% Similarity=0.243 Sum_probs=172.4
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEE
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~y 116 (515)
.++|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++. ..++|
T Consensus 322 ~~~l~~~~l~~~~--~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--------~~i~~ 391 (556)
T PRK11819 322 DKVIEAENLSKSF--GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET--------VKLAY 391 (556)
T ss_pred CeEEEEEeEEEEE--CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc--------eEEEE
Confidence 3589999999987 4567999999999999999999999999999999999999999999999542 15999
Q ss_pred EecCC-CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-cccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 117 VRSQS-FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-VLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 117 v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
++|+. .+++.+||.||+.+........ . ....+..+++.+|+.+ ..++++++|||||||||+||++|+.+|+
T Consensus 392 v~q~~~~~~~~~tv~e~l~~~~~~~~~~----~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 465 (556)
T PRK11819 392 VDQSRDALDPNKTVWEEISGGLDIIKVG----N--REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGN 465 (556)
T ss_pred EeCchhhcCCCCCHHHHHHhhccccccc----c--cHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99986 6888999999998764322111 0 1123457899999974 6799999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC-CeEE-EecCcc
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG-GRTM-YSGKRR 266 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~-G~iv-~~G~~~ 266 (515)
+|||||||+|||+.++..+.+.|+++. .+||+++|+. .++..+||++++|++ |+++ +.|+.+
T Consensus 466 lllLDEPt~~LD~~~~~~l~~~l~~~~---------~tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 466 VLLLDEPTNDLDVETLRALEEALLEFP---------GCAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQ 529 (556)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhCC---------CeEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHH
Confidence 999999999999999999999999862 3688888875 578899999999985 7776 455543
No 322
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.5e-38 Score=376.03 Aligned_cols=211 Identities=18% Similarity=0.261 Sum_probs=179.7
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i~ 115 (515)
.++++|++++|..+.+.+|+|+||+|+|||.+||+|+||||||||+++|.|+++|++|+|.+||.++. ...+|++++
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Is 1316 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccE
Confidence 69999999999544457999999999999999999999999999999999999999999999999984 356889999
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-------ccccCccc----CCChHHHHHHH
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-------QVLSTRVG----RLTTSELKRLS 184 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~----~LSGGerqRv~ 184 (515)
+|+|++.+|.. |++|||..+.. ..++++.++++..++. ...|+.++ +||||||||++
T Consensus 1317 iVpQdp~LF~G-TIreNLd~~~~-----------~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrla 1384 (1622)
T PLN03130 1317 IIPQAPVLFSG-TVRFNLDPFNE-----------HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLS 1384 (1622)
T ss_pred EECCCCccccc-cHHHHhCcCCC-----------CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHH
Confidence 99999999976 99999975321 1123455555655553 23455554 59999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||||+++|+|||||||||+||..+...|.+.|++..+ + +|+|+++|... ...-||||+||++|++++.|+
T Consensus 1385 LARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~-~------~TvI~IAHRL~--tI~~~DrIlVLd~G~IvE~Gt 1455 (1622)
T PLN03130 1385 LARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-S------CTMLIIAHRLN--TIIDCDRILVLDAGRVVEFDT 1455 (1622)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-C------CEEEEEeCChH--HHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999998753 3 79999999753 445699999999999999999
Q ss_pred ccchHH
Q psy10236 265 RRDMLP 270 (515)
Q Consensus 265 ~~~~~~ 270 (515)
++++++
T Consensus 1456 ~~eLl~ 1461 (1622)
T PLN03130 1456 PENLLS 1461 (1622)
T ss_pred HHHHHh
Confidence 999863
No 323
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.9e-38 Score=375.86 Aligned_cols=210 Identities=16% Similarity=0.249 Sum_probs=178.8
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i~ 115 (515)
.++++|++++|..+.+.+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++. ...+|++++
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 59999999999544467999999999999999999999999999999999999999999999999984 356889999
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-------cccCccc----CCChHHHHHHH
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-------VLSTRVG----RLTTSELKRLS 184 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~----~LSGGerqRv~ 184 (515)
||+|++.+|+. |++|||..... ..++++.++++..++.+ ..|+.++ +||||||||++
T Consensus 1314 iVpQdp~LF~g-TIr~NL~~~~~-----------~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrla 1381 (1495)
T PLN03232 1314 IIPQSPVLFSG-TVRFNIDPFSE-----------HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLS 1381 (1495)
T ss_pred EECCCCeeeCc-cHHHHcCCCCC-----------CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHH
Confidence 99999999986 99999975310 11234555666655533 2344443 59999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||||+++|+|||||||||+||+.+...|.+.|++..+ ++|+|+++|.. +...-||||++|++|++++.|+
T Consensus 1382 LARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~-------~~TvI~IAHRl--~ti~~~DrIlVL~~G~ivE~Gt 1452 (1495)
T PLN03232 1382 LARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFK-------SCTMLVIAHRL--NTIIDCDKILVLSSGQVLEYDS 1452 (1495)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-------CCEEEEEeCCH--HHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999998743 37999999986 3455699999999999999999
Q ss_pred ccchH
Q psy10236 265 RRDML 269 (515)
Q Consensus 265 ~~~~~ 269 (515)
+++++
T Consensus 1453 ~~eLl 1457 (1495)
T PLN03232 1453 PQELL 1457 (1495)
T ss_pred HHHHH
Confidence 99886
No 324
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.3e-37 Score=341.20 Aligned_cols=203 Identities=17% Similarity=0.250 Sum_probs=171.8
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEE
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~y 116 (515)
.++++++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++. ..++|
T Consensus 320 ~~~l~~~~l~~~~--~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~--------~~i~~ 389 (552)
T TIGR03719 320 DKVIEAENLSKGF--GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET--------VKLAY 389 (552)
T ss_pred CeEEEEeeEEEEE--CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc--------eEEEE
Confidence 4689999999987 4567999999999999999999999999999999999999999999999542 15999
Q ss_pred EecCC-CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-cccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 117 VRSQS-FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-VLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 117 v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
++|+. .+++.+||.|++.+........ . ...++.++++.+|+.+ ..++++++|||||||||+||++|+.+|+
T Consensus 390 v~q~~~~~~~~~tv~e~l~~~~~~~~~~----~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~ 463 (552)
T TIGR03719 390 VDQSRDALDPNKTVWEEISGGLDIIQLG----K--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGN 463 (552)
T ss_pred EeCCccccCCCCcHHHHHHhhccccccC----c--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCC
Confidence 99986 4788999999998764322111 1 1223557899999974 5799999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC-CeEE-EecCc
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG-GRTM-YSGKR 265 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~-G~iv-~~G~~ 265 (515)
+|||||||+|||+.++..+.+.|+++. .+||+++|++ ..+.++||++++|++ |+++ +.|+.
T Consensus 464 lllLDEPt~~LD~~~~~~l~~~l~~~~---------~~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 464 VLLLDEPTNDLDVETLRALEEALLEFA---------GCAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHCC---------CeEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCH
Confidence 999999999999999999999999872 3688888875 578889999999986 5776 44544
No 325
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.2e-37 Score=342.02 Aligned_cols=201 Identities=20% Similarity=0.214 Sum_probs=175.1
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEE
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~y 116 (515)
.++++++|+++.| ++. .|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++ ..++|
T Consensus 338 ~~~l~~~~ls~~~--~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~----------~~i~y 404 (590)
T PRK13409 338 ETLVEYPDLTKKL--GDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----------LKISY 404 (590)
T ss_pred ceEEEEcceEEEE--CCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----------eeEEE
Confidence 4689999999987 333 5999999999999999999999999999999999999999999986 15999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
++|+..+.+.+||.|++.+..... . ....++++++.+||.+..++++.+|||||||||+||++|+.+|++|
T Consensus 405 ~~Q~~~~~~~~tv~e~l~~~~~~~--~-------~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~ll 475 (590)
T PRK13409 405 KPQYIKPDYDGTVEDLLRSITDDL--G-------SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLY 475 (590)
T ss_pred ecccccCCCCCcHHHHHHHHhhhc--C-------hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999988889999999998753211 0 1234678999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCcc
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRR 266 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~ 266 (515)
||||||+|||+.++..+.+.|++++++. ++|||+++|+. .++..+|||+++|+ |++...|...
T Consensus 476 LLDEPt~~LD~~~~~~l~~~l~~l~~~~-----g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~~ 538 (590)
T PRK13409 476 LLDEPSAHLDVEQRLAVAKAIRRIAEER-----EATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHAS 538 (590)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhC-----CCEEEEEeCCH-HHHHHhCCEEEEEc-CcceeeeecC
Confidence 9999999999999999999999998752 37999999985 57888999999995 5887777643
No 326
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.2e-38 Score=373.68 Aligned_cols=213 Identities=17% Similarity=0.267 Sum_probs=179.5
Q ss_pred CeEEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-----------------------
Q psy10236 38 PHLQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA----------------------- 93 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~----------------------- 93 (515)
..++++||+|+|+.. ++++|+|+||++++|+.+||+||||||||||+++|.|+++|
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence 369999999999632 45799999999999999999999999999999999999998
Q ss_pred -------------------------------CeeEEEECCeeCC---hhhhccceEEEecCCCCCCCCCHHHHHHHHhhc
Q psy10236 94 -------------------------------KAFQVILNGHSIP---LNALKRRLVYVRSQSFLSPELNVAQTLTFYSHL 139 (515)
Q Consensus 94 -------------------------------~~G~I~~~G~~~~---~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~ 139 (515)
++|+|++||.++. ...+|+.++||+|++.+|+ .|++|||.++..
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~- 1321 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE- 1321 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC-
Confidence 5999999999983 4568999999999999985 699999998621
Q ss_pred CCCCCCCchhhHHHHHHHHHHHcCC-------cccccCcccC----CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChh
Q psy10236 140 RRPPKHSIKVTTSEQMGLLIEELGL-------TQVLSTRVGR----LTTSELKRLSIACCLMSHADILLLDCPTVFMDIF 208 (515)
Q Consensus 140 ~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~~----LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~ 208 (515)
. ..+++++++++..++ ++..|+.+|+ ||||||||++|||||+++|+|||||||||+||+.
T Consensus 1322 ---~------at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~ 1392 (1466)
T PTZ00265 1322 ---D------ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSN 1392 (1466)
T ss_pred ---C------CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 1 112334445554443 4456777764 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHh-CCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC----CeEE-EecCccchH
Q psy10236 209 DTFFLVEFLRGWAS-GGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG----GRTM-YSGKRRDML 269 (515)
Q Consensus 209 ~~~~i~~~L~~l~~-~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~----G~iv-~~G~~~~~~ 269 (515)
+...|.+.|+++.+ ++ +|+|+++|.+ ...+.||+|++|++ |+++ +.|+.++++
T Consensus 1393 sE~~I~~~L~~~~~~~~------~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1393 SEKLIEKTIVDIKDKAD------KTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HHHHHHHHHHHHhccCC------CEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 99999999999863 34 8999999975 45678999999999 9955 899998875
No 327
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=6.9e-38 Score=342.10 Aligned_cols=197 Identities=24% Similarity=0.403 Sum_probs=165.3
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
..++++|++++|+.+++++|+|+|+++++||.++|+||||||||||+|+|+|+++|++|+|.+||.++. ...+++.+
T Consensus 319 ~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred CeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 369999999998644457999999999999999999999999999999999999999999999999874 35678899
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccc-------ccCccc----CCChHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV-------LSTRVG----RLTTSELKRL 183 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v~----~LSGGerqRv 183 (515)
+||+|++.+++ .|++||+.++.. . ..++++.+.++..++.+. .|+.++ +||||||||+
T Consensus 399 ~~v~Q~~~lf~-~ti~~Ni~~~~~----~------~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri 467 (529)
T TIGR02857 399 AWVPQHPFLFA-GTIAENIRLARP----D------ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRL 467 (529)
T ss_pred EEEcCCCcccC-cCHHHHHhccCC----C------CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHH
Confidence 99999999886 599999987521 0 012345556666665432 344443 5999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV 254 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL 254 (515)
+|||||+++|++++|||||++||+.+...+.+.|+++.+ + +|+|+++|++ +..+.||+|++|
T Consensus 468 ~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~-~------~t~i~itH~~--~~~~~~d~i~~l 529 (529)
T TIGR02857 468 ALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQ-G------RTVLLVTHRL--ALAERADRIVVL 529 (529)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcC-C------CEEEEEecCH--HHHHhCCEEEeC
Confidence 999999999999999999999999999999999998853 3 7899989986 355789999985
No 328
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.6e-37 Score=340.44 Aligned_cols=201 Identities=17% Similarity=0.189 Sum_probs=170.2
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
..++++|++++|+ +++.+|+|+|+++++||.+||+||||||||||+++|+|+++|++|+|.+||+++. ...+++.+
T Consensus 321 ~~i~~~~v~f~y~-~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 399 (547)
T PRK10522 321 QTLELRNVTFAYQ-DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLF 399 (547)
T ss_pred ceEEEEEEEEEeC-CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhhe
Confidence 4699999999985 3456999999999999999999999999999999999999999999999999874 34578899
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCc-----ccCCChHHHHHHHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTR-----VGRLTTSELKRLSIACCL 189 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-----v~~LSGGerqRv~IA~aL 189 (515)
+||+|++.+++. |+++| . . ...++.+++.++.+++....+.. -.+||||||||++||||+
T Consensus 400 ~~v~q~~~lf~~-ti~~n---~-----~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal 464 (547)
T PRK10522 400 SAVFTDFHLFDQ-LLGPE---G-----K------PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLAL 464 (547)
T ss_pred EEEecChhHHHH-hhccc---c-----C------chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHH
Confidence 999999887764 66665 0 0 12335677888899887544322 237999999999999999
Q ss_pred HhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 190 MSHADILLLDCPTVFMDIFDTFFLVEFLRGWAS-GGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 190 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
+++|++|+|||||++||+.+...+.+.|.+..+ .+ +|+|+++|++ +..+.||++++|++|++++.
T Consensus 465 ~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~------~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 465 AEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMG------KTIFAISHDD--HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC------CEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999987643 34 7899999976 46778999999999999876
No 329
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.3e-37 Score=339.96 Aligned_cols=184 Identities=30% Similarity=0.384 Sum_probs=155.9
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC--hhhhccceE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP--LNALKRRLV 115 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~--~~~~~~~i~ 115 (515)
..++++|++++|+ +++++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++. ...+++.++
T Consensus 333 ~~I~~~~vsf~Y~-~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 333 PTLELRDLSFGYP-GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred ceEEEEEEEEecC-CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheE
Confidence 3699999999985 3356999999999999999999999999999999999999999999999998874 345788999
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-------cccCcccC----CChHHHHHHH
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-------VLSTRVGR----LTTSELKRLS 184 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~----LSGGerqRv~ 184 (515)
||+|++.+|+. |++|||.++. + ...++++.++++..++.+ ..|+.+++ ||||||||++
T Consensus 412 ~V~Q~~~lF~~-TI~eNI~~g~----~------~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRia 480 (529)
T TIGR02868 412 VFAQDAHLFDT-TVRDNLRLGR----P------DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLA 480 (529)
T ss_pred EEccCcccccc-cHHHHHhccC----C------CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHH
Confidence 99999999876 9999998752 1 112344566666666543 34666654 9999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPP 240 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~ 240 (515)
|||||+++|+|||||||||+||+.+...+.+.|+++.+ ++|+|+++|++
T Consensus 481 iARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~-------~~TvIiItHrl 529 (529)
T TIGR02868 481 LARALLADAPILLLDEPTEHLDAGTESELLEDLLAALS-------GKTVVVITHHL 529 (529)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-------CCEEEEEecCC
Confidence 99999999999999999999999999999999998643 37899888863
No 330
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.4e-37 Score=338.20 Aligned_cols=203 Identities=13% Similarity=0.234 Sum_probs=170.4
Q ss_pred CeEEEEeeEEeCCCC---CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhc
Q psy10236 38 PHLQVRGLEVPPSSK---NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALK 111 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~---~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~ 111 (515)
..++++|++++|+.+ .+.+|+|+|+++++||++||+||||||||||+++|+|.++|++|+|.+||.++.. ..++
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 469999999998532 2359999999999999999999999999999999999999999999999998843 4577
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcc------cCCChHHHHHHHH
Q psy10236 112 RRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRV------GRLTTSELKRLSI 185 (515)
Q Consensus 112 ~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v------~~LSGGerqRv~I 185 (515)
+.++||+|++.++.. |+++|+. + ...++++.++++.+++.+..+..+ .+||||||||++|
T Consensus 416 ~~i~~v~q~~~lf~~-ti~~n~~-------~------~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlal 481 (555)
T TIGR01194 416 DLFSAIFADFHLFDD-LIGPDEG-------E------HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLAL 481 (555)
T ss_pred hhCcEEccChhhhhh-hhhcccc-------c------chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHH
Confidence 889999999888764 7777731 1 123456778899999876554433 4699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHH-HHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 186 ACCLMSHADILLLDCPTVFMDIFDTFFLVEFLR-GWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 186 A~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~-~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
|||++.+|++|||||||++||+.+...+.+.+. .+..++ +|+|+++|++ +..+.||+|++|++|++++.
T Consensus 482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~------~tiiiisH~~--~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQG------KTIIIISHDD--QYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC------CEEEEEeccH--HHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999998664 454444 8999999986 46678999999999999864
No 331
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-37 Score=340.04 Aligned_cols=203 Identities=17% Similarity=0.270 Sum_probs=173.7
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEE
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~y 116 (515)
.++|+++|+++.| +++.+|+|+||+|++||++||+|||||||||||++|+|+.+|++|+|.+++. ..+||
T Consensus 310 ~~~l~~~~l~~~y--~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~igy 379 (638)
T PRK10636 310 NPLLKMEKVSAGY--GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--------IKLGY 379 (638)
T ss_pred CceEEEEeeEEEe--CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC--------EEEEE
Confidence 4589999999987 4577999999999999999999999999999999999999999999999742 25999
Q ss_pred EecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 117 VRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 117 v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
++|+. .+.+..|+.+++.. .. + .....++.++++.+++. +..++++++|||||||||+||++|+.+|
T Consensus 380 ~~Q~~~~~l~~~~~~~~~~~~---~~-~------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p 449 (638)
T PRK10636 380 FAQHQLEFLRADESPLQHLAR---LA-P------QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRP 449 (638)
T ss_pred ecCcchhhCCccchHHHHHHH---hC-c------hhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 99974 35566777776531 11 1 12245678899999996 4789999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEE-EecCccchH
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTM-YSGKRRDML 269 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv-~~G~~~~~~ 269 (515)
++|||||||+|||+.++..+.+.|+++ + .|||+++|+. ..+..+||++++|++|+++ +.|+.++..
T Consensus 450 ~lLlLDEPt~~LD~~~~~~l~~~L~~~---~------gtvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 450 NLLLLDEPTNHLDLDMRQALTEALIDF---E------GALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHc---C------CeEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999999999999999987 2 3888888875 5788999999999999997 788877653
No 332
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.2e-37 Score=369.52 Aligned_cols=210 Identities=17% Similarity=0.234 Sum_probs=181.0
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i~ 115 (515)
.|+++|++++|..+...+|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++. ...+|+.++
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 69999999999644456999999999999999999999999999999999999999999999999984 356889999
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-------cccCccc----CCChHHHHHHH
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-------VLSTRVG----RLTTSELKRLS 184 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~----~LSGGerqRv~ 184 (515)
||+|++.+|.. |++|||.... ...++++.++++..|+.+ ..|+.++ +||||||||++
T Consensus 1388 iVpQdp~LF~g-TIreNIdp~~-----------~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLa 1455 (1560)
T PTZ00243 1388 MIPQDPVLFDG-TVRQNVDPFL-----------EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMC 1455 (1560)
T ss_pred EECCCCccccc-cHHHHhCccc-----------CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHH
Confidence 99999999976 9999995321 112345667777777654 3456664 49999999999
Q ss_pred HHHHHHhC-CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 185 IACCLMSH-ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 185 IA~aL~~~-p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
|||||+++ |+|||||||||+||+.+...|.+.|++..+ ++|+|+++|.. +....||+|++|++|++++.|
T Consensus 1456 LARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~-------~~TvI~IAHRl--~ti~~~DrIlVLd~G~VvE~G 1526 (1560)
T PTZ00243 1456 MARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS-------AYTVITIAHRL--HTVAQYDKIIVMDHGAVAEMG 1526 (1560)
T ss_pred HHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC-------CCEEEEEeccH--HHHHhCCEEEEEECCEEEEEC
Confidence 99999995 899999999999999999999999998643 27999999975 466779999999999999999
Q ss_pred CccchH
Q psy10236 264 KRRDML 269 (515)
Q Consensus 264 ~~~~~~ 269 (515)
++++++
T Consensus 1527 t~~eLl 1532 (1560)
T PTZ00243 1527 SPRELV 1532 (1560)
T ss_pred CHHHHH
Confidence 999986
No 333
>KOG0055|consensus
Probab=100.00 E-value=2e-37 Score=348.93 Aligned_cols=220 Identities=19% Similarity=0.271 Sum_probs=184.5
Q ss_pred CCcCeEEEEeeEEeCCC-CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhh
Q psy10236 35 EFFPHLQVRGLEVPPSS-KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNAL 110 (515)
Q Consensus 35 ~~~~~L~v~~l~~~~~~-~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~ 110 (515)
.....++++|++|.|+. .+.+||+|+|+++++|+.+||+|||||||||.+.+|-..+.|++|.|.+||.++. .+.+
T Consensus 983 ~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 983 NVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred cceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHH
Confidence 34457999999999863 3567999999999999999999999999999999999999999999999999884 3568
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHH-HH--HcCCcccccCcccC----CChHHHHHH
Q psy10236 111 KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLL-IE--ELGLTQVLSTRVGR----LTTSELKRL 183 (515)
Q Consensus 111 ~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~-l~--~lgL~~~~~~~v~~----LSGGerqRv 183 (515)
|+++|.|.|+|.+|.. |++||+.++.. + . ...+..+.++.. +. ..+|++-.|+++|+ ||||||||+
T Consensus 1063 R~~i~lVsQEP~LF~~-TIrENI~YG~~-~-v----s~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRI 1135 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFNG-TIRENIAYGSE-E-V----SEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRI 1135 (1228)
T ss_pred HHhcceeccCchhhcc-cHHHHHhccCC-C-C----CHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHH
Confidence 9999999999999865 99999998721 1 1 111221111110 11 13778889999984 999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+||||+++||+||||||.||+||.++.+.+-+.|.+... |+|.|++.|.. ...+-||.|+|+++|++++.|
T Consensus 1136 AIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~-------gRT~IvIAHRL--STIqnaD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1136 AIARAILRNPKILLLDEATSALDSESERVVQEALDRAME-------GRTTIVIAHRL--STIQNADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred HHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc-------CCcEEEEecch--hhhhcCCEEEEEECCEEEecc
Confidence 999999999999999999999999999999999999764 37888888875 367789999999999999999
Q ss_pred CccchHH
Q psy10236 264 KRRDMLP 270 (515)
Q Consensus 264 ~~~~~~~ 270 (515)
+.++++.
T Consensus 1207 tH~~L~~ 1213 (1228)
T KOG0055|consen 1207 THDELLA 1213 (1228)
T ss_pred cHHHHHh
Confidence 9999874
No 334
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.6e-37 Score=368.70 Aligned_cols=211 Identities=16% Similarity=0.243 Sum_probs=179.9
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i~ 115 (515)
.++++|++++|+.+...+|+||||+|+|||.+||+|++|||||||+++|.|+++|++|+|.+||.++. ...+|++++
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCe
Confidence 69999999999644457999999999999999999999999999999999999999999999999984 356899999
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-------ccccCccc----CCChHHHHHHH
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-------QVLSTRVG----RLTTSELKRLS 184 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~----~LSGGerqRv~ 184 (515)
+|+|++.+|+. |++|||..... ..++++.++++..++. +..|+.++ +||||||||++
T Consensus 1364 iVpQdp~LF~g-TIr~NLdp~~~-----------~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~ 1431 (1522)
T TIGR00957 1364 IIPQDPVLFSG-SLRMNLDPFSQ-----------YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVC 1431 (1522)
T ss_pred EECCCCcccCc-cHHHHcCcccC-----------CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHH
Confidence 99999999987 99999963210 1123455566666553 23455564 49999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||||+++|+|||||||||+||+.+...+.+.|++..+ ++|+|+++|.. +...-||||++|++|++++.|+
T Consensus 1432 LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~-------~~TvI~IAHRl--~ti~~~DrIlVld~G~IvE~G~ 1502 (1522)
T TIGR00957 1432 LARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFE-------DCTVLTIAHRL--NTIMDYTRVIVLDKGEVAEFGA 1502 (1522)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-------CCEEEEEecCH--HHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999998643 37999999975 3556699999999999999999
Q ss_pred ccchHH
Q psy10236 265 RRDMLP 270 (515)
Q Consensus 265 ~~~~~~ 270 (515)
++++++
T Consensus 1503 ~~eLl~ 1508 (1522)
T TIGR00957 1503 PSNLLQ 1508 (1522)
T ss_pred HHHHHh
Confidence 998863
No 335
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.5e-37 Score=305.74 Aligned_cols=201 Identities=18% Similarity=0.243 Sum_probs=167.1
Q ss_pred EeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEE-----------ECCeeCChh--h
Q psy10236 43 RGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVI-----------LNGHSIPLN--A 109 (515)
Q Consensus 43 ~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~-----------~~G~~~~~~--~ 109 (515)
.|++++|. +++.+|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. ++|+++... .
T Consensus 4 ~~~~~~y~-~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYG-PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeec-CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 36777773 3346899999 5999999999999999999999999999999999996 788876321 1
Q ss_pred -hc--cceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHH
Q psy10236 110 -LK--RRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIA 186 (515)
Q Consensus 110 -~~--~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA 186 (515)
.+ ..++|++|...+++. ++.+++.... . ....++.+.++++.+||.+..++.+.+||||||||++||
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--~-------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 151 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--K-------KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIA 151 (255)
T ss_pred hhhcccceeeecchhccCch-HHHHHHHHHh--c-------hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 11 247899998877774 8888877642 1 122345678899999999989999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 187 CCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 187 ~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
++|+.+|++++|||||+|||+.++..+.+.|+++++++ ++||+++|++ ..+.++||++++| +|++++.|
T Consensus 152 ral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~------~tIIiiSHd~-~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 152 AALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDD------NYVLVVEHDL-AVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC------CEEEEEECCH-HHHHHhCCEEEEE-CCCCCcce
Confidence 99999999999999999999999999999999998765 7999999985 4677899999999 46566544
No 336
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.3e-37 Score=307.53 Aligned_cols=224 Identities=19% Similarity=0.301 Sum_probs=192.6
Q ss_pred cCeEEEEeeEEeCC--CCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-----CeeEEEECCeeC---C
Q psy10236 37 FPHLQVRGLEVPPS--SKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-----KAFQVILNGHSI---P 106 (515)
Q Consensus 37 ~~~L~v~~l~~~~~--~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-----~~G~I~~~G~~~---~ 106 (515)
.+.|+++||++.+. .+...++++|||++++||.+||+|.||||||-..+.|.|+++. .+|+|.++|+++ +
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 46799999998774 2356799999999999999999999999999999999999864 379999999987 2
Q ss_pred hhhhc----cceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc---ccccCcccCCCh
Q psy10236 107 LNALK----RRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT---QVLSTRVGRLTT 177 (515)
Q Consensus 107 ~~~~~----~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~v~~LSG 177 (515)
....+ .+|++++|++ .+.|-.|+...+.-..+++... .+...++++.++++.+|+. ...+.+|++|||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~---~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSG 160 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGL---SRAAARARALELLELVGIPEPEKRLDAYPHELSG 160 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCc
Confidence 22222 4699999997 5778889988887766655432 2466788899999999995 457889999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCC
Q psy10236 178 SELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGG 257 (515)
Q Consensus 178 GerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G 257 (515)
||||||.||+||+++|++||.||||++||...+.+|+++|++|.++- |..+++++|+. .-+.+++|||+||.+|
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~-----gMa~lfITHDL-~iVr~~ADrV~VM~~G 234 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-----GMAILFITHDL-GIVRKFADRVYVMQHG 234 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHh-----CcEEEEEeccH-HHHHHhhhhEEEEecc
Confidence 99999999999999999999999999999999999999999998763 47888899975 5789999999999999
Q ss_pred eEEEecCccchH
Q psy10236 258 RTMYSGKRRDML 269 (515)
Q Consensus 258 ~iv~~G~~~~~~ 269 (515)
++++.|..++++
T Consensus 235 ~ivE~~~t~~lF 246 (534)
T COG4172 235 EIVETGTTETLF 246 (534)
T ss_pred EEeecCcHHHHh
Confidence 999999998876
No 337
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.5e-36 Score=337.67 Aligned_cols=200 Identities=17% Similarity=0.211 Sum_probs=171.3
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEE
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~y 116 (515)
.++|+++|+++.| +++.+|+|+||+|++||++||+|||||||||||++|+|+++|++|+|.+ |.++ .++|
T Consensus 317 ~~~l~~~~l~~~~--~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~-------~i~y 386 (635)
T PRK11147 317 KIVFEMENVNYQI--DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL-------EVAY 386 (635)
T ss_pred CceEEEeeeEEEE--CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-------EEEE
Confidence 4589999999987 4567999999999999999999999999999999999999999999998 5432 5999
Q ss_pred EecCC-CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 117 VRSQS-FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 117 v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
++|+. .+++.+||.||+.+...... . ......+.++++.+++. +..++++++|||||||||+||++|+.+|+
T Consensus 387 ~~q~~~~l~~~~tv~e~l~~~~~~~~-~-----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~ 460 (635)
T PRK11147 387 FDQHRAELDPEKTVMDNLAEGKQEVM-V-----NGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSN 460 (635)
T ss_pred EeCcccccCCCCCHHHHHHhhccccc-c-----cchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC
Confidence 99975 58899999999987532110 0 01134577899999996 57899999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe-CCeEEEe
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS-GGRTMYS 262 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~-~G~iv~~ 262 (515)
+|||||||+|||+.++..+.+.|+++ + .|||+++|+. ..+..+||++++|+ +|+++.+
T Consensus 461 lLlLDEPt~~LD~~~~~~l~~~l~~~---~------~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~ 519 (635)
T PRK11147 461 LLILDEPTNDLDVETLELLEELLDSY---Q------GTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRY 519 (635)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhC---C------CeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEc
Confidence 99999999999999999999999876 2 4888888874 57889999999997 7998654
No 338
>KOG0056|consensus
Probab=100.00 E-value=2.9e-37 Score=314.97 Aligned_cols=218 Identities=18% Similarity=0.288 Sum_probs=181.6
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
..++++|+++.|. .++++|+||||++.||+.+|++||||+||||++++|......++|.|.+||+++. ...+|+.|
T Consensus 536 G~i~fsnvtF~Y~-p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 536 GKIEFSNVTFAYD-PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred CeEEEEEeEEecC-CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 3699999999995 6789999999999999999999999999999999999999999999999999984 35689999
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHH-HHHcCCcccccCcccC----CChHHHHHHHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLL-IEELGLTQVLSTRVGR----LTTSELKRLSIACCL 189 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~-l~~lgL~~~~~~~v~~----LSGGerqRv~IA~aL 189 (515)
|.||||..+|.+ |+..|+.++. +...........++..+ =+.++..+..++++|+ |||||||||+|||++
T Consensus 615 GVVPQDtvLFNd-TI~yNIryak----~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARti 689 (790)
T KOG0056|consen 615 GVVPQDTVLFND-TILYNIRYAK----PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTI 689 (790)
T ss_pred CcccCcceeecc-eeeeheeecC----CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHH
Confidence 999999998865 8999988752 21111111111222222 2336788889999997 999999999999999
Q ss_pred HhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 190 MSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 190 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+.+|.+++|||.||+||..+.+.|...|.+++.. +|.|++.|..+ ..--+|.|+++++|+|++.|..++++
T Consensus 690 LK~P~iIlLDEATSALDT~tER~IQaaL~rlca~-------RTtIVvAHRLS--TivnAD~ILvi~~G~IvErG~HeeLl 760 (790)
T KOG0056|consen 690 LKAPSIILLDEATSALDTNTERAIQAALARLCAN-------RTTIVVAHRLS--TIVNADLILVISNGRIVERGRHEELL 760 (790)
T ss_pred hcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcC-------CceEEEeeeeh--heecccEEEEEeCCeEeecCcHHHHH
Confidence 9999999999999999999999999999999863 56666666543 34458999999999999999998876
Q ss_pred H
Q psy10236 270 P 270 (515)
Q Consensus 270 ~ 270 (515)
.
T Consensus 761 ~ 761 (790)
T KOG0056|consen 761 K 761 (790)
T ss_pred h
Confidence 3
No 339
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=283.70 Aligned_cols=220 Identities=17% Similarity=0.261 Sum_probs=178.0
Q ss_pred eEEEEeeEEeCCC---CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChh---hhcc
Q psy10236 39 HLQVRGLEVPPSS---KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLN---ALKR 112 (515)
Q Consensus 39 ~L~v~~l~~~~~~---~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~---~~~~ 112 (515)
|+.+.|+++.+.. ..+++|+++|++|..|+.+.|+|.||||||||+|+|+|.++|++|+|.++|.+++.. ....
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 3556666665422 246899999999999999999999999999999999999999999999999999653 2334
Q ss_pred ceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCC---chhhHHHHHHHHHHHc--CCcccccCcccCCChHHHHHHHH
Q psy10236 113 RLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHS---IKVTTSEQMGLLIEEL--GLTQVLSTRVGRLTTSELKRLSI 185 (515)
Q Consensus 113 ~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~---~~~~~~~~v~~~l~~l--gL~~~~~~~v~~LSGGerqRv~I 185 (515)
.++-|+|++ ...|.||+.||+..+.. |+..... .....++...+-++.+ ||++..+++++-|||||||-+++
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~-Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAES-RGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHh-cCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 577789986 67899999999998653 3211110 0122333444555665 56899999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCc
Q psy10236 186 ACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKR 265 (515)
Q Consensus 186 A~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~ 265 (515)
+.|-++.|+||+|||-|++|||.++..+++.-.++.++. +-|.++++|+ ..++.++-+|.++|++|+||.+-.-
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~-----klTtlMVTHn-m~~Al~yG~RlImLh~G~IvlDv~g 233 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEH-----KLTTLMVTHN-MEDALDYGNRLIMLHSGKIVLDVTG 233 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhc-----CCceEEEecc-HHHHHhhCCeEEEEeCCeEEEEccc
Confidence 999999999999999999999999999999999997764 3566777776 5689999999999999999987543
No 340
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1e-36 Score=362.75 Aligned_cols=210 Identities=12% Similarity=0.249 Sum_probs=169.6
Q ss_pred eEEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEEC-CeeCC---hhhhccc
Q psy10236 39 HLQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILN-GHSIP---LNALKRR 113 (515)
Q Consensus 39 ~L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~-G~~~~---~~~~~~~ 113 (515)
.|+++||+++|+.. ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++ |.++. ...+|+.
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 69999999998532 3469999999999999999999999999999999999999999999995 67663 3457888
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcC----------CCC----------C---------------------------CC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLR----------RPP----------K---------------------------HS 146 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~----------~~~----------~---------------------------~~ 146 (515)
++||+|++.+|+. |++||+.++.... .+. . ..
T Consensus 462 Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 540 (1466)
T PTZ00265 462 IGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKN 540 (1466)
T ss_pred ccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccc
Confidence 9999999999875 9999999863100 000 0 00
Q ss_pred chhhHHHHHHHHHHHcCCccc-------cc----CcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHH
Q psy10236 147 IKVTTSEQMGLLIEELGLTQV-------LS----TRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVE 215 (515)
Q Consensus 147 ~~~~~~~~v~~~l~~lgL~~~-------~~----~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~ 215 (515)
.....++++.++++.+++.+. .+ ....+||||||||++|||||+++|+||||||||++||+.++..+.+
T Consensus 541 ~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~ 620 (1466)
T PTZ00265 541 YQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQK 620 (1466)
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 001123456777777776543 23 3455699999999999999999999999999999999999999999
Q ss_pred HHHHHHh-CCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCC
Q psy10236 216 FLRGWAS-GGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGG 257 (515)
Q Consensus 216 ~L~~l~~-~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G 257 (515)
.|+++++ +| +|+|+++|++. ..+.||+|++|++|
T Consensus 621 ~L~~~~~~~g------~TvIiIsHrls--~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 621 TINNLKGNEN------RITIIIAHRLS--TIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHhhcCC------CEEEEEeCCHH--HHHhCCEEEEEeCC
Confidence 9999975 34 89999999863 34789999999986
No 341
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.3e-36 Score=276.35 Aligned_cols=223 Identities=20% Similarity=0.251 Sum_probs=191.8
Q ss_pred CeEEEEeeEEeCCC-------CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---
Q psy10236 38 PHLQVRGLEVPPSS-------KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--- 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~-------~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--- 107 (515)
+.|+|+||++++.+ ....+++.|||++++|+.+||+|.||||||||.|+|+|..+|++|+|.+||+++..
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 56899999987532 23468999999999999999999999999999999999999999999999999842
Q ss_pred hhhccceEEEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCC-cccccCcccCCChHHHHHHH
Q psy10236 108 NALKRRLVYVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGL-TQVLSTRVGRLTTSELKRLS 184 (515)
Q Consensus 108 ~~~~~~i~yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~v~~LSGGerqRv~ 184 (515)
....++|-+++|++ .+.|.+.+.+-|....++.... ......+++-+.++.+|| .+.++-++..||-||||||+
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~---~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVa 159 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDL---EPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVA 159 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccC---ChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHH
Confidence 23457799999987 4778888888888776654332 234556778889999999 67889999999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
+||||+.+|+|+|.||...+||...+.++.++.-++.++- |.+-|.++.|. .-+..++|+|+||++|++|+.|+
T Consensus 160 LARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~-----GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 160 LARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQ-----GISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHh-----CceEEEEechh-hHhhhhcccEEEEecCceeecCC
Confidence 9999999999999999999999999999999999998753 36777777764 57899999999999999999999
Q ss_pred ccchH
Q psy10236 265 RRDML 269 (515)
Q Consensus 265 ~~~~~ 269 (515)
+.+++
T Consensus 234 t~~v~ 238 (267)
T COG4167 234 TADVL 238 (267)
T ss_pred hhhhh
Confidence 98875
No 342
>KOG0059|consensus
Probab=100.00 E-value=5.5e-37 Score=350.89 Aligned_cols=224 Identities=22% Similarity=0.354 Sum_probs=204.6
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hhhccc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~~~~~ 113 (515)
..+.++|+++.|...++ +++++|+.|++||+.|++|+|||||||++|+|+|..+|++|++.++|.++.. ...++.
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 36899999998743333 9999999999999999999999999999999999999999999999998843 236788
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
+||+||.|.+++.+|.+|++.+++++++-+ ..+.++.++.+++.+||.+.++++++.+|||+|||+++|.|++.+|
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~----~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p 717 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLP----RSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDP 717 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCC----hhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCC
Confidence 999999999999999999999999998743 2456677999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHHHHH
Q psy10236 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFA 273 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~~f~ 273 (515)
++++|||||+|+||.+++.+++++++++++| +.||+|+|. .+|...+|||+.+|.+|++...|+++++...|.
T Consensus 718 ~vi~LDEPstGmDP~arr~lW~ii~~~~k~g------~aiiLTSHs-MeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 718 SVILLDEPSTGLDPKARRHLWDIIARLRKNG------KAIILTSHS-MEEAEALCTRTAIMVIGQLRCIGSPQELKSRYG 790 (885)
T ss_pred CEEEecCCCCCCCHHHHHHHHHHHHHHHhcC------CEEEEEcCC-HHHHHHHhhhhheeecCeeEEecChHHHHhhcC
Confidence 9999999999999999999999999999876 689999987 679999999999999999999999999987663
No 343
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2e-36 Score=362.17 Aligned_cols=209 Identities=21% Similarity=0.302 Sum_probs=180.6
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i~ 115 (515)
.++++||+++|+.+.+.+|+||||+|++||.+||+|+||||||||+++|.|+++ .+|+|.+||.++. ...+|++++
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceE
Confidence 699999999996556789999999999999999999999999999999999997 7999999999984 356889999
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-------cccCccc----CCChHHHHHHH
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-------VLSTRVG----RLTTSELKRLS 184 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~----~LSGGerqRv~ 184 (515)
||||++.+|+. |++|||.... ...++++.++++..+|.+ ..|+.++ +||||||||++
T Consensus 1296 ~IpQdp~LF~G-TIR~NLdp~~-----------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~ 1363 (1490)
T TIGR01271 1296 VIPQKVFIFSG-TFRKNLDPYE-----------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMC 1363 (1490)
T ss_pred EEeCCCccCcc-CHHHHhCccc-----------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHH
Confidence 99999999986 9999995321 112356677788877743 3455554 49999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||||+++|+||||||||++||..+...|.+.|++..+ ++|||+++|.+ +....||||++|++|++++.|+
T Consensus 1364 LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~-------~~TvI~IaHRl--~ti~~~DrIlvL~~G~ivE~g~ 1434 (1490)
T TIGR01271 1364 LARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS-------NCTVILSEHRV--EALLECQQFLVIEGSSVKQYDS 1434 (1490)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-------CCEEEEEecCH--HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999998743 27999999975 3556699999999999999999
Q ss_pred ccchH
Q psy10236 265 RRDML 269 (515)
Q Consensus 265 ~~~~~ 269 (515)
+++++
T Consensus 1435 p~~Ll 1439 (1490)
T TIGR01271 1435 IQKLL 1439 (1490)
T ss_pred HHHHH
Confidence 98876
No 344
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-36 Score=335.17 Aligned_cols=209 Identities=15% Similarity=0.236 Sum_probs=166.8
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEe
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVR 118 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~ 118 (515)
+|+++||+++| +++.+|+||||+|++||++||+||||||||||||+|+|..+|++|+|.++|.. .++|++
T Consensus 1 ~i~i~nls~~~--g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~--------~i~~~~ 70 (638)
T PRK10636 1 MIVFSSLQIRR--GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW--------QLAWVN 70 (638)
T ss_pred CEEEEEEEEEe--CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC--------EEEEEe
Confidence 58999999987 56789999999999999999999999999999999999999999999998842 378888
Q ss_pred cCCCCCCCCCHHHHHHHHh-----------------------hcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccC
Q psy10236 119 SQSFLSPELNVAQTLTFYS-----------------------HLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGR 174 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~-----------------------~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~ 174 (515)
|+.... ..|+.+++.-.. .+............+.++.++++.+|+. +..++++++
T Consensus 71 q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 149 (638)
T PRK10636 71 QETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSD 149 (638)
T ss_pred cCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhh
Confidence 854332 245554432100 0000000000012345788899999997 578999999
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE
Q psy10236 175 LTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV 254 (515)
Q Consensus 175 LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL 254 (515)
|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ + .+||+++|+. ..+..+||++++|
T Consensus 150 LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~------~tviivsHd~-~~l~~~~d~i~~L 219 (638)
T PRK10636 150 FSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---Q------GTLILISHDR-DFLDPIVDKIIHI 219 (638)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---C------CeEEEEeCCH-HHHHHhcCEEEEE
Confidence 9999999999999999999999999999999999999999999875 2 5888888875 5788999999999
Q ss_pred eCCeEE-EecCccch
Q psy10236 255 SGGRTM-YSGKRRDM 268 (515)
Q Consensus 255 ~~G~iv-~~G~~~~~ 268 (515)
++|+++ +.|+.+..
T Consensus 220 ~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 220 EQQSLFEYTGNYSSF 234 (638)
T ss_pred eCCEEEEecCCHHHH
Confidence 999996 56765543
No 345
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=4.9e-36 Score=272.51 Aligned_cols=144 Identities=20% Similarity=0.337 Sum_probs=132.0
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEec
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRS 119 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q 119 (515)
++++|+++.| ++..+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+ +.++|++|
T Consensus 1 l~~~~l~~~~--~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--------~~i~~~~~ 70 (144)
T cd03221 1 IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--------VKIGYFEQ 70 (144)
T ss_pred CEEEEEEEEE--CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--------EEEEEEcc
Confidence 4689999987 3457999999999999999999999999999999999999999999999984 46889887
Q ss_pred CCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEe
Q psy10236 120 QSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLD 199 (515)
Q Consensus 120 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLD 199 (515)
||+||+||++|||||+.+|+++++|
T Consensus 71 -------------------------------------------------------lS~G~~~rv~laral~~~p~illlD 95 (144)
T cd03221 71 -------------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLD 95 (144)
T ss_pred -------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCe
Q psy10236 200 CPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258 (515)
Q Consensus 200 EPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~ 258 (515)
|||+|||+.++..+.+.|+++ + +|+++++|++ +++.++||++++|++|+
T Consensus 96 EP~~~LD~~~~~~l~~~l~~~---~------~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 96 EPTNHLDLESIEALEEALKEY---P------GTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred CCccCCCHHHHHHHHHHHHHc---C------CEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 999999999999999999986 2 6889999985 47888999999999985
No 346
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=6.2e-36 Score=334.24 Aligned_cols=205 Identities=16% Similarity=0.222 Sum_probs=169.3
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEE
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~y 116 (515)
.++|+++|+++.|. +++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.+++. .+++|
T Consensus 506 ~~~L~~~~ls~~y~-~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~--------~~igy 576 (718)
T PLN03073 506 PPIISFSDASFGYP-GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--------VRMAV 576 (718)
T ss_pred CceEEEEeeEEEeC-CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc--------eeEEE
Confidence 36899999999873 3456999999999999999999999999999999999999999999998752 46999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHHHHHhCCCE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLMSHADI 195 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~aL~~~p~l 195 (515)
++|+. .+.+++.++.........+. ...+++.++++.+|+. +..++++++|||||||||+||++|+.+|++
T Consensus 577 v~Q~~--~~~l~~~~~~~~~~~~~~~~------~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~l 648 (718)
T PLN03073 577 FSQHH--VDGLDLSSNPLLYMMRCFPG------VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 648 (718)
T ss_pred Eeccc--cccCCcchhHHHHHHHhcCC------CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCE
Confidence 99975 34556666643322111111 1135678899999997 468999999999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEE-EecCccch
Q psy10236 196 LLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTM-YSGKRRDM 268 (515)
Q Consensus 196 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv-~~G~~~~~ 268 (515)
|||||||+|||+.++..+.+.|+++ + .|||+++|+. ..+..+||++++|.+|+++ +.|+.++.
T Consensus 649 LLLDEPT~~LD~~s~~~l~~~L~~~---~------gtvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 649 LLLDEPSNHLDLDAVEALIQGLVLF---Q------GGVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHc---C------CEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999998888764 2 4888899985 5788899999999999998 67766543
No 347
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-36 Score=277.56 Aligned_cols=189 Identities=22% Similarity=0.353 Sum_probs=169.4
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccceEE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRLVY 116 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i~y 116 (515)
+++.+||+.. ++...++.++||++.+||++-|.||||||||||||+|+|+.+|++|+|+++|.++.. +..++.+-|
T Consensus 2 ~L~a~~L~~~--R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~y 79 (209)
T COG4133 2 MLEAENLSCE--RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLY 79 (209)
T ss_pred cchhhhhhhc--cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHH
Confidence 5788899875 477889999999999999999999999999999999999999999999999998854 235577888
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
+.-++.+-+.|||.|||.|...+.... ....+.+.++.+||....|.++++||-||||||+|||-.++.+++.
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~-------~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLW 152 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSG-------NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLW 152 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCC-------chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCce
Confidence 888889999999999999988765431 2356778999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCch
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTY 242 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~ 242 (515)
|||||+++||......+-.++..-+.+| ..|+.++|||..
T Consensus 153 iLDEP~taLDk~g~a~l~~l~~~H~~~G------GiVllttHq~l~ 192 (209)
T COG4133 153 ILDEPFTALDKEGVALLTALMAAHAAQG------GIVLLTTHQPLP 192 (209)
T ss_pred eecCcccccCHHHHHHHHHHHHHHhcCC------CEEEEecCCccC
Confidence 9999999999999999999999888776 799999999864
No 348
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2e-35 Score=282.08 Aligned_cols=202 Identities=19% Similarity=0.242 Sum_probs=180.2
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHH
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQT 132 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~ 132 (515)
...+|+||||++++||.+||+|+||||||||||+|+|.++|++|+|.++|+-... +.- .-.+.|++|.+||
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~l--i~l-------g~Gf~pelTGreN 109 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL--IEL-------GAGFDPELTGREN 109 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehh--hhc-------ccCCCcccchHHH
Confidence 3468999999999999999999999999999999999999999999999974321 111 2345688999999
Q ss_pred HHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHH
Q psy10236 133 LTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFF 212 (515)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~ 212 (515)
+.+...+.+.. ..+.+++++++++.-+|.+..|++++++|-||+-|++.|.|...+|+|||+||-.+--|+.-+++
T Consensus 110 i~l~~~~~G~~----~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K 185 (249)
T COG1134 110 IYLRGLILGLT----RKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEK 185 (249)
T ss_pred HHHHHHHhCcc----HHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHH
Confidence 99987765432 46788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHHHHHh
Q psy10236 213 LVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFAA 274 (515)
Q Consensus 213 i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~~f~~ 274 (515)
-.+.++++.+++ +|||+++|+. ..+.++|||+++|++|++...|+++++.++++.
T Consensus 186 ~~~rl~e~~~~~------~tiv~VSHd~-~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 186 CLERLNELVEKN------KTIVLVSHDL-GAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred HHHHHHHHHHcC------CEEEEEECCH-HHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHH
Confidence 999999997765 7999999985 579999999999999999999999999987654
No 349
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.2e-35 Score=330.60 Aligned_cols=209 Identities=17% Similarity=0.268 Sum_probs=164.9
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEe
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVR 118 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~ 118 (515)
+|+++|++++| +++.+|+||||+|++||++||+||||||||||||+|+|+.+|++|+|.++|.. .++|++
T Consensus 3 ~l~i~~ls~~~--~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~--------~~~~l~ 72 (635)
T PRK11147 3 LISIHGAWLSF--SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL--------IVARLQ 72 (635)
T ss_pred EEEEeeEEEEe--CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC--------EEEEec
Confidence 69999999987 45779999999999999999999999999999999999999999999998732 256666
Q ss_pred cCCCCCCCCCHHHHHHH------------------------------HhhcCCCCCCCchhhHHHHHHHHHHHcCCcccc
Q psy10236 119 SQSFLSPELNVAQTLTF------------------------------YSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVL 168 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~------------------------------~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 168 (515)
|.+......++.+++.. ...+..............++.++++.+|+. .
T Consensus 73 q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~ 150 (635)
T PRK11147 73 QDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--P 150 (635)
T ss_pred cCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--C
Confidence 65433233455554321 100000000000012345688999999997 3
Q ss_pred cCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhc
Q psy10236 169 STRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMI 248 (515)
Q Consensus 169 ~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~ 248 (515)
++++++|||||||||+||++|+.+|+||||||||++||+.++..+.+.|+++. .+||+++|+. ..+..+|
T Consensus 151 ~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---------~tvlivsHd~-~~l~~~~ 220 (635)
T PRK11147 151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---------GSIIFISHDR-SFIRNMA 220 (635)
T ss_pred CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---------CEEEEEeCCH-HHHHHhc
Confidence 88999999999999999999999999999999999999999999999999862 4888888875 5788899
Q ss_pred cEEEEEeCCeEE-EecCccchH
Q psy10236 249 SRVLLVSGGRTM-YSGKRRDML 269 (515)
Q Consensus 249 Drv~vL~~G~iv-~~G~~~~~~ 269 (515)
|+|++|++|+++ +.|+.++..
T Consensus 221 d~i~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 221 TRIVDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred CeEEEEECCEEEEecCCHHHHH
Confidence 999999999997 457765543
No 350
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.4e-35 Score=277.94 Aligned_cols=156 Identities=19% Similarity=0.229 Sum_probs=135.6
Q ss_pred EeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCC
Q psy10236 43 RGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSF 122 (515)
Q Consensus 43 ~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~ 122 (515)
.|++++| +++.+++++ +++++||+++|+||||||||||+|+|+|+++|++|+|.++|++ ++|++|+..
T Consensus 4 ~~l~~~~--~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---------i~~~~q~~~ 71 (177)
T cd03222 4 PDCVKRY--GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT---------PVYKPQYID 71 (177)
T ss_pred CCeEEEE--CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE---------EEEEcccCC
Confidence 4777876 567789985 9999999999999999999999999999999999999999963 678776421
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCC
Q psy10236 123 LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPT 202 (515)
Q Consensus 123 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPt 202 (515)
||||||||++|||+|+.+|++++|||||
T Consensus 72 ----------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 72 ----------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred ----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 9999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe--cCccch
Q psy10236 203 VFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS--GKRRDM 268 (515)
Q Consensus 203 sgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~--G~~~~~ 268 (515)
+|||+.++..+.+.|+++++++ +.|+|+++|+. .++.++||++++|+++-.++. |.|...
T Consensus 100 s~LD~~~~~~l~~~l~~~~~~~-----~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 161 (177)
T cd03222 100 AYLDIEQRLNAARAIRRLSEEG-----KKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPKGT 161 (177)
T ss_pred ccCCHHHHHHHHHHHHHHHHcC-----CCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCcch
Confidence 9999999999999999997653 37899999985 567889999999998876654 555543
No 351
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.6e-35 Score=330.11 Aligned_cols=194 Identities=12% Similarity=0.232 Sum_probs=162.9
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYV 117 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv 117 (515)
.+++++|+++.++ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++ ++.++||
T Consensus 450 ~~i~~~nv~~~~~-~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~--------~~~i~~v 520 (659)
T TIGR00954 450 NGIKFENIPLVTP-NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA--------KGKLFYV 520 (659)
T ss_pred CeEEEEeeEEECC-CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC--------CCcEEEE
Confidence 4799999999874 345799999999999999999999999999999999999999999998864 4579999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcc---------cCCChHHHHHHHHHHH
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRV---------GRLTTSELKRLSIACC 188 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v---------~~LSGGerqRv~IA~a 188 (515)
+|++.+++. |++||+.+......... ....++++.++++.+|+.+..+++. ++||||||||++||||
T Consensus 521 ~Q~~~l~~~-tv~eni~~~~~~~~~~~---~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 521 PQRPYMTLG-TLRDQIIYPDSSEDMKR---RGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred CCCCCCCCc-CHHHHHhcCCChhhhhc---cCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 999988877 99999987542211000 0112345778899999987666543 6899999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS 255 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~ 255 (515)
|+++|+++||||||+|||+.+...+.+.+++. | +|+|+++|++. ..+.||++++|+
T Consensus 597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~~---~------~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 597 FYHKPQFAILDECTSAVSVDVEGYMYRLCREF---G------ITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---C------CEEEEEeCchH--HHHhCCEEEEEe
Confidence 99999999999999999999999999988763 4 78999999864 568899999996
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.9e-35 Score=274.72 Aligned_cols=159 Identities=17% Similarity=0.228 Sum_probs=134.7
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHH
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQT 132 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~ 132 (515)
.+.+|+|+||++++||+++|+||||||||||||+|.+ ++|++.++|..- ...++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~--~~~~~~~~~~~q------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLP--KFSRNKLIFIDQ------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCccc--ccccccEEEEhH-------------
Confidence 4678999999999999999999999999999999964 689999988632 112334777765
Q ss_pred HHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-cccCcccCCChHHHHHHHHHHHHHhC--CCEEEEeCCCCCCChhh
Q psy10236 133 LTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-VLSTRVGRLTTSELKRLSIACCLMSH--ADILLLDCPTVFMDIFD 209 (515)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSGGerqRv~IA~aL~~~--p~lLlLDEPtsgLD~~~ 209 (515)
.++++.++|.. ..++++.+||||||||++||++|+.+ |+++||||||+|||+.+
T Consensus 68 -----------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 -----------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred -----------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 13578888875 48899999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEE
Q psy10236 210 TFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMY 261 (515)
Q Consensus 210 ~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~ 261 (515)
+..+.+.|+++++.| +|||+++|++. + .+.||++++|.+|+...
T Consensus 125 ~~~l~~~l~~~~~~g------~tvIivSH~~~-~-~~~~d~i~~l~~g~~~~ 168 (176)
T cd03238 125 INQLLEVIKGLIDLG------NTVILIEHNLD-V-LSSADWIIDFGPGSGKS 168 (176)
T ss_pred HHHHHHHHHHHHhCC------CEEEEEeCCHH-H-HHhCCEEEEECCCCCCC
Confidence 999999999997655 89999999864 4 46899999997655433
No 353
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4.2e-35 Score=321.95 Aligned_cols=190 Identities=21% Similarity=0.276 Sum_probs=160.6
Q ss_pred eEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEE-----------ECCeeCChh--h--
Q psy10236 45 LEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVI-----------LNGHSIPLN--A-- 109 (515)
Q Consensus 45 l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~-----------~~G~~~~~~--~-- 109 (515)
++++|. ++..+|++++ .+++||++||+||||||||||+|+|+|+++|++|+|. ++|+++... .
T Consensus 79 ~~~~yg-~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 79 PVHRYG-VNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred ceEEec-CCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 466663 2346899999 9999999999999999999999999999999999997 999887421 1
Q ss_pred -hccceEEEecCCCCCCCC---CHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHH
Q psy10236 110 -LKRRLVYVRSQSFLSPEL---NVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSI 185 (515)
Q Consensus 110 -~~~~i~yv~q~~~~~~~l---Tv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~I 185 (515)
.+..+++.+|.....|.+ ||.|++... ...++++++++.+||.+..++.+++|||||||||+|
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~-------------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~i 223 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKKV-------------DERGKLDEVVERLGLENILDRDISELSGGELQRVAI 223 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHhh-------------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 123466666655444433 999988631 123567889999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCC
Q psy10236 186 ACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGG 257 (515)
Q Consensus 186 A~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G 257 (515)
|++|+.+|++|||||||++||+.++..+.+.|+++++ | ++||+++|+. .++..+||++++|+++
T Consensus 224 a~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g------~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 224 AAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-G------KYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-C------CEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999987 6 8999999985 5788999999999864
No 354
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-34 Score=261.02 Aligned_cols=218 Identities=20% Similarity=0.221 Sum_probs=175.1
Q ss_pred CcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCee---CC-----h
Q psy10236 36 FFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHS---IP-----L 107 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~---~~-----~ 107 (515)
..|.|+++++++.| +...-.+||||++.|||+++|+|.|||||||||++|++++.|++|+|.+.-.+ .. .
T Consensus 3 ~~PLL~V~~lsk~Y--g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msE 80 (258)
T COG4107 3 DKPLLSVSGLSKLY--GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSE 80 (258)
T ss_pred CCcceeehhhhhhh--CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhch
Confidence 34689999999987 55667999999999999999999999999999999999999999999886532 21 1
Q ss_pred hh----hccceEEEecCCC--CCCCCCHHHHH----H-HHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCC
Q psy10236 108 NA----LKRRLVYVRSQSF--LSPELNVAQTL----T-FYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRL 175 (515)
Q Consensus 108 ~~----~~~~i~yv~q~~~--~~~~lTv~e~l----~-~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~L 175 (515)
.+ .|..-|+|.|++. +-...+...|+ + .+.+.+ -..++.+.+++++++++ ...|..+...
T Consensus 81 aeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHY--------G~iR~~a~~WL~~VEI~~~RiDD~PrtF 152 (258)
T COG4107 81 AERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY--------GNIRAEAQDWLEEVEIDLDRIDDLPRTF 152 (258)
T ss_pred HHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhh--------hhHHHHHHHHHHhcccCcccccCccccc
Confidence 11 2345799999753 33333333333 2 122211 23456678899999996 5678899999
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe
Q psy10236 176 TTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS 255 (515)
Q Consensus 176 SGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~ 255 (515)
|||+|||+.|||.|++.|++.++||||-|||...+..++++++.+..+- +-.+++++|+. .-+.-++||.++|+
T Consensus 153 SGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l-----~la~viVTHDl-~VarLla~rlmvmk 226 (258)
T COG4107 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL-----GLAVVIVTHDL-AVARLLADRLMVMK 226 (258)
T ss_pred chHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhc-----CceEEEEechh-HHHHHhhhcceeec
Confidence 9999999999999999999999999999999999999999999998753 36788888874 34556799999999
Q ss_pred CCeEEEecCccchH
Q psy10236 256 GGRTMYSGKRRDML 269 (515)
Q Consensus 256 ~G~iv~~G~~~~~~ 269 (515)
+|++++.|-++.++
T Consensus 227 ~g~vve~GLTDrvL 240 (258)
T COG4107 227 QGQVVESGLTDRVL 240 (258)
T ss_pred CCCEeccccccccc
Confidence 99999999998875
No 355
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-34 Score=264.09 Aligned_cols=153 Identities=27% Similarity=0.431 Sum_probs=137.7
Q ss_pred EEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceEEEe
Q psy10236 42 VRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLVYVR 118 (515)
Q Consensus 42 v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~ 118 (515)
++|+++.| .++.+++++|+++++||+++|+|+||||||||+++|+|.++|++|+|.++|.++.. ...++.++|++
T Consensus 2 ~~~~~~~~--~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRY--GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred eEEEEEEe--CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 57888876 34579999999999999999999999999999999999999999999999987642 34567788988
Q ss_pred cCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEE
Q psy10236 119 SQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlL 198 (515)
| |||||+||++||++++.+|++++|
T Consensus 80 q-------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 80 Q-------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred e-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8 999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCe
Q psy10236 199 DCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258 (515)
Q Consensus 199 DEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~ 258 (515)
||||+|||..++..+.+.|+++.+.+ +++++++|++ .++..+||+++++++|+
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~~~------~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAEEG------RTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCC------CEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 99999999999999999999987654 7899999985 56788899999999875
No 356
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.1e-34 Score=343.91 Aligned_cols=203 Identities=19% Similarity=0.299 Sum_probs=168.0
Q ss_pred CeEEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEE
Q psy10236 38 PHLQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~y 116 (515)
..++++|++++|+.. ++++|+|+|+++++||.++|+||+|||||||+++|+|.++|++|.+. .+++.++|
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~---------~~~~~Iay 683 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV---------VIRGSVAY 683 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---------EecCcEEE
Confidence 369999999998532 46799999999999999999999999999999999999999998763 24678999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-------cccCcccC----CChHHHHHHHH
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-------VLSTRVGR----LTTSELKRLSI 185 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~----LSGGerqRv~I 185 (515)
|+|++.++.. |++|||.|+... .+++.+++++..+|.+ ..++.+|+ ||||||||++|
T Consensus 684 v~Q~p~Lf~g-TIreNI~fg~~~-----------~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 751 (1495)
T PLN03232 684 VPQVSWIFNA-TVRENILFGSDF-----------ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSM 751 (1495)
T ss_pred EcCccccccc-cHHHHhhcCCcc-----------CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHH
Confidence 9999999865 999999986311 1244555666666533 34566654 99999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCChhhHHHHHHH-HHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 186 ACCLMSHADILLLDCPTVFMDIFDTFFLVEF-LRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 186 A~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~-L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||+.++|+|+|||||||+||+.+..++.+. ++.+. ++ +|+|+++|++ .....||+|++|++|++++.|+
T Consensus 752 ARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~------kT~IlvTH~~--~~l~~aD~Ii~L~~G~i~~~Gt 822 (1495)
T PLN03232 752 ARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KG------KTRVLVTNQL--HFLPLMDRIILVSEGMIKEEGT 822 (1495)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cC------CEEEEEECCh--hhHHhCCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999988765 44432 33 8999999986 4677899999999999999999
Q ss_pred ccchHH
Q psy10236 265 RRDMLP 270 (515)
Q Consensus 265 ~~~~~~ 270 (515)
.+++..
T Consensus 823 ~~eL~~ 828 (1495)
T PLN03232 823 FAELSK 828 (1495)
T ss_pred HHHHHh
Confidence 888763
No 357
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.5e-34 Score=341.66 Aligned_cols=201 Identities=18% Similarity=0.307 Sum_probs=168.9
Q ss_pred CeEEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCe-eEEEECCeeCChhhhccceE
Q psy10236 38 PHLQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKA-FQVILNGHSIPLNALKRRLV 115 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~-G~I~~~G~~~~~~~~~~~i~ 115 (515)
+.++++|++++|+.+ ++++|+|+|+++++||.++|+||+|||||||+++|.|.++|++ |+|.+ +..++
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l----------~~~Ia 682 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI----------RGTVA 682 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE----------cCeEE
Confidence 469999999998532 3679999999999999999999999999999999999999999 89975 45799
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-------cccCcccC----CChHHHHHHH
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-------VLSTRVGR----LTTSELKRLS 184 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~----LSGGerqRv~ 184 (515)
||+|++.++.. |++|||.|+... .+++.+++++..+|.+ ..++.+|+ ||||||||++
T Consensus 683 yv~Q~p~Lfng-TIreNI~fg~~~-----------d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIa 750 (1622)
T PLN03130 683 YVPQVSWIFNA-TVRDNILFGSPF-----------DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVS 750 (1622)
T ss_pred EEcCccccCCC-CHHHHHhCCCcc-----------cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHH
Confidence 99999998864 999999986321 2345666677666643 23555654 9999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHH-HHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVE-FLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
||||+.++|+|+|||||||+||+.+..++.+ .++.+. ++ +|+|+++|++ .....||+|++|++|++++.|
T Consensus 751 LARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~------kTvIlVTH~l--~~l~~aD~Ii~L~~G~i~e~G 821 (1622)
T PLN03130 751 MARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RG------KTRVLVTNQL--HFLSQVDRIILVHEGMIKEEG 821 (1622)
T ss_pred HHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cC------CEEEEEECCH--hHHHhCCEEEEEeCCEEEEeC
Confidence 9999999999999999999999999988765 555543 33 8999999986 467889999999999999999
Q ss_pred CccchH
Q psy10236 264 KRRDML 269 (515)
Q Consensus 264 ~~~~~~ 269 (515)
+.+++.
T Consensus 822 t~~eL~ 827 (1622)
T PLN03130 822 TYEELS 827 (1622)
T ss_pred CHHHHH
Confidence 988875
No 358
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.3e-34 Score=251.79 Aligned_cols=189 Identities=17% Similarity=0.249 Sum_probs=161.3
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC---CeeEEEECCeeCCh-hhhccce
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA---KAFQVILNGHSIPL-NALKRRL 114 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~---~~G~I~~~G~~~~~-~~~~~~i 114 (515)
++.++|++.+. ++...|-|+|++|.+||++-||||||||||||+..+.|.+.+ .+|++.+|++.++. ..-++.+
T Consensus 2 ~l~l~nvsl~l--~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~ 79 (213)
T COG4136 2 MLCLKNVSLRL--PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQI 79 (213)
T ss_pred ceeeeeeeecC--CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhe
Confidence 57899999754 677899999999999999999999999999999999999976 48999999999854 3457889
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
|..+|++.+||+++|.+|+.|+.-... .....+..++..+++.||....++-+.+||||||-||++-|+|+..|+
T Consensus 80 GiLFQD~lLFphlsVg~Nl~fAlp~~~-----KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk 154 (213)
T COG4136 80 GILFQDALLFPHLSVGQNLLFALPATL-----KGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPK 154 (213)
T ss_pred eeeecccccccccccccceEEecCccc-----ccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcc
Confidence 999999999999999999988642111 123455667889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHH-hCCCCCCCCcEEEEEeCCC
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWA-SGGPAGMAGKMVILTLQPP 240 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~~~~~~~tiiis~h~~ 240 (515)
.++||||+|.||..-+.++.+..-.-. ..| ..++.++|+.
T Consensus 155 ~lLLDEPFS~LD~ALR~qfR~wVFs~~r~ag------iPtv~VTHD~ 195 (213)
T COG4136 155 ALLLDEPFSRLDVALRDQFRQWVFSEVRAAG------IPTVQVTHDL 195 (213)
T ss_pred eeeeCCchhHHHHHHHHHHHHHHHHHHHhcC------CCeEEEeccc
Confidence 999999999999999999988876543 334 5556666653
No 359
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.4e-33 Score=338.72 Aligned_cols=206 Identities=19% Similarity=0.287 Sum_probs=166.2
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEe
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVR 118 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~ 118 (515)
.++++|+++.|+.+.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|++|+|.++| .++||+
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------~i~yv~ 705 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----------SVAYVP 705 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----------EEEEEc
Confidence 6999999999853346799999999999999999999999999999999999999999999987 499999
Q ss_pred cCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHH--HHHHHcCC-----cccccCcccCCChHHHHHHHHHHHHHh
Q psy10236 119 SQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMG--LLIEELGL-----TQVLSTRVGRLTTSELKRLSIACCLMS 191 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~--~~l~~lgL-----~~~~~~~v~~LSGGerqRv~IA~aL~~ 191 (515)
|++.++ +.|++||+.++... ..+..++.++ .+.+.++. ....+.+..+||||||||++||||++.
T Consensus 706 Q~~~l~-~~Ti~eNI~~g~~~-------~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~ 777 (1522)
T TIGR00957 706 QQAWIQ-NDSLRENILFGKAL-------NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS 777 (1522)
T ss_pred CCcccc-CCcHHHHhhcCCcc-------CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 998876 46999999985321 0111111111 11222222 223345566799999999999999999
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHH--hCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWA--SGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~--~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+|++++|||||++||+.++..+.+.+.+.. .+ ++|+|+++|++. ....||+|++|++|+++..|+.+++.
T Consensus 778 ~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~------~~tvIlvTH~~~--~l~~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 778 NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLK------NKTRILVTHGIS--YLPQVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhc------CCEEEEEeCChh--hhhhCCEEEEecCCeEEeeCCHHHHH
Confidence 999999999999999999999999997542 22 379999999863 45569999999999999999988875
Q ss_pred H
Q psy10236 270 P 270 (515)
Q Consensus 270 ~ 270 (515)
.
T Consensus 850 ~ 850 (1522)
T TIGR00957 850 Q 850 (1522)
T ss_pred h
Confidence 3
No 360
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=303.97 Aligned_cols=209 Identities=20% Similarity=0.291 Sum_probs=173.5
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYV 117 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv 117 (515)
.+|+++|+++.| +++.+++|+|+++.+|+.+||+|+||||||||||+|+|...|++|+|...+. .+++|+
T Consensus 2 ~~i~~~~ls~~~--g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~--------~~v~~l 71 (530)
T COG0488 2 SMITLENLSLAY--GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG--------LRVGYL 71 (530)
T ss_pred ceEEEeeeEEee--CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC--------ceEEEe
Confidence 479999999987 7889999999999999999999999999999999999999999999987542 259999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhc-C------------CCCC-------------CCchhhHHHHHHHHHHHcCCcccccCc
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHL-R------------RPPK-------------HSIKVTTSEQMGLLIEELGLTQVLSTR 171 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~-~------------~~~~-------------~~~~~~~~~~v~~~l~~lgL~~~~~~~ 171 (515)
+|+....+..||.+.+.-...- + .... .......+.++..++..+|+.+. +++
T Consensus 72 ~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~ 150 (530)
T COG0488 72 SQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRP 150 (530)
T ss_pred CCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCc
Confidence 9999999999999987543210 0 0000 00001123567788999999877 999
Q ss_pred ccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEE
Q psy10236 172 VGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRV 251 (515)
Q Consensus 172 v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv 251 (515)
+++||||||.||+||++|+.+|++|+|||||+.||..+...+.+.|+++. | |+|+++|+ ..-+-+.|++|
T Consensus 151 ~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~--------g-tviiVSHD-R~FLd~V~t~I 220 (530)
T COG0488 151 VSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP--------G-TVIVVSHD-RYFLDNVATHI 220 (530)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC--------C-cEEEEeCC-HHHHHHHhhhe
Confidence 99999999999999999999999999999999999999999999998652 3 78888887 56788999999
Q ss_pred EEEeCCeEE-EecCccc
Q psy10236 252 LLVSGGRTM-YSGKRRD 267 (515)
Q Consensus 252 ~vL~~G~iv-~~G~~~~ 267 (515)
+-++.|++. |.|.-+.
T Consensus 221 ~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 221 LELDRGKLTPYKGNYSS 237 (530)
T ss_pred EEecCCceeEecCCHHH
Confidence 999999765 4455443
No 361
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.2e-33 Score=291.33 Aligned_cols=219 Identities=23% Similarity=0.324 Sum_probs=186.9
Q ss_pred CcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hhhc
Q psy10236 36 FFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NALK 111 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~~~ 111 (515)
..+.++++|++.. ..++|+||++++|||+||.|-=|||+|-|+++|.|..++.+|+|.+||+++.. ..++
T Consensus 260 ~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~ 333 (500)
T COG1129 260 GEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK 333 (500)
T ss_pred CCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHH
Confidence 4567999999752 15899999999999999999999999999999999999999999999998732 3578
Q ss_pred cceEEEecC---CCCCCCCCHHHHHHHHhhcCCCCC-CCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHH
Q psy10236 112 RRLVYVRSQ---SFLSPELNVAQTLTFYSHLRRPPK-HSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIA 186 (515)
Q Consensus 112 ~~i~yv~q~---~~~~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA 186 (515)
..++||+.+ ..+++.++|.+|+.++...+.... .......++.++++.+.+++. ...++++++||||+||||.||
T Consensus 334 ~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred cCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHH
Confidence 899999875 679999999999988732121111 122344556788999999994 667899999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCcc
Q psy10236 187 CCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRR 266 (515)
Q Consensus 187 ~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~ 266 (515)
|.|..+|++|||||||.|.|..++.+|+++|++++++| ++||++++. .+|+..+||||+||++|+++..-+.+
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G------~ail~iSSE-lpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEG------KAILMISSE-LPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCC------CEEEEEeCC-hHHHHhhCCEEEEEECCEEEEEeccc
Confidence 99999999999999999999999999999999999988 777777776 56999999999999999999876655
Q ss_pred c
Q psy10236 267 D 267 (515)
Q Consensus 267 ~ 267 (515)
+
T Consensus 487 ~ 487 (500)
T COG1129 487 E 487 (500)
T ss_pred c
Confidence 4
No 362
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-34 Score=286.60 Aligned_cols=213 Identities=19% Similarity=0.299 Sum_probs=176.4
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i~ 115 (515)
.+.++++++.|. ..+++|+++||++++|+.+|++||+|+||||++++|-..+.+++|.|.+||+++. .+..|+-||
T Consensus 262 ~v~F~~V~F~y~-~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg 340 (497)
T COG5265 262 AVAFINVSFAYD-PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340 (497)
T ss_pred eEEEEEEEeecc-ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhC
Confidence 588999999984 6788999999999999999999999999999999999999999999999999883 356889999
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHH-----HHHHHHHcCCcccccCcccC----CChHHHHHHHHH
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQ-----MGLLIEELGLTQVLSTRVGR----LTTSELKRLSIA 186 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~v~~----LSGGerqRv~IA 186 (515)
.|||+..+|.+ |...|+.++.. .. ..++.... +...++ .+.+..++.||+ |||||||||+||
T Consensus 341 ~VPQDtvLFND-ti~yni~ygr~----~a--t~eev~aaa~~aqi~~fi~--~lP~gy~t~VgerglklSggekqrvaia 411 (497)
T COG5265 341 IVPQDTVLFND-TIAYNIKYGRP----DA--TAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGLKLSGGEKQRVAIA 411 (497)
T ss_pred cCcccceehhh-hHHHHHhccCc----cc--cHHHHHHHHHHhhhhHHHH--hCchhhhcccchheeeccCchHHHHHHH
Confidence 99999988865 88888887531 11 11111111 111222 346778888886 999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCcc
Q psy10236 187 CCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRR 266 (515)
Q Consensus 187 ~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~ 266 (515)
|+++.+|+||++||.||+||..+.+++...|++.++ ++|.+++.|..+ ..--+|.|+||++|+|++.|..+
T Consensus 412 r~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~-------~rttlviahrls--ti~~adeiivl~~g~i~erg~h~ 482 (497)
T COG5265 412 RTILKNPPILILDEATSALDTHTEQAIQAALREVSA-------GRTTLVIAHRLS--TIIDADEIIVLDNGRIVERGTHE 482 (497)
T ss_pred HHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC-------CCeEEEEeehhh--hccCCceEEEeeCCEEEecCcHH
Confidence 999999999999999999999999999999999874 267677777643 33448999999999999999998
Q ss_pred chHH
Q psy10236 267 DMLP 270 (515)
Q Consensus 267 ~~~~ 270 (515)
+++.
T Consensus 483 ~ll~ 486 (497)
T COG5265 483 ELLA 486 (497)
T ss_pred HHHH
Confidence 8874
No 363
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=9.5e-33 Score=330.69 Aligned_cols=189 Identities=19% Similarity=0.283 Sum_probs=153.6
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHH
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTL 133 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l 133 (515)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++| .++|++|++.+++. ||+||+
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g----------~iayv~Q~~~l~~~-Ti~eNI 507 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----------RISFSPQTSWIMPG-TIKDNI 507 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC----------EEEEEeCCCccCCc-cHHHHH
Confidence 4689999999999999999999999999999999999999999999998 49999999998875 999999
Q ss_pred HHHhhcCCCCCCCchhhHHH-----HHHHHHHHcCC--cccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q psy10236 134 TFYSHLRRPPKHSIKVTTSE-----QMGLLIEELGL--TQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL--~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD 206 (515)
.|+.... ....++ ..++.++.+.. ......+..+|||||||||+||||++.+|+++||||||+|||
T Consensus 508 ~~g~~~~-------~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD 580 (1490)
T TIGR01271 508 IFGLSYD-------EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLD 580 (1490)
T ss_pred Hhccccc-------hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 9864211 011111 11222333221 112344566799999999999999999999999999999999
Q ss_pred hhhHHHHHHH-HHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 207 IFDTFFLVEF-LRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 207 ~~~~~~i~~~-L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+.++..+.+. ++++.+ + +|+|+++|++. ....||+|++|++|+++..|+.+++.
T Consensus 581 ~~~~~~i~~~~l~~~~~-~------~tvilvtH~~~--~~~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 581 VVTEKEIFESCLCKLMS-N------KTRILVTSKLE--HLKKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHHHHHHHHhc-C------CeEEEEeCChH--HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999985 566543 3 89999999864 34569999999999999999988775
No 364
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.3e-33 Score=313.53 Aligned_cols=218 Identities=16% Similarity=0.218 Sum_probs=160.8
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC---CCCeeEEEECCeeC-----Chh
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN---DAKAFQVILNGHSI-----PLN 108 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~---~~~~G~I~~~G~~~-----~~~ 108 (515)
..+|+++|++++| +++.+|+|+||+|.+||++||+|||||||||||++|+|.. .|++|+|.+.++.+ +..
T Consensus 175 ~~~I~i~nls~~y--~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 175 IKDIHMENFSISV--GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred ceeEEEceEEEEe--CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 3479999999998 4567999999999999999999999999999999999964 57888887654432 110
Q ss_pred ------------hhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCC---------------CchhhHHHHHHHHHHH
Q psy10236 109 ------------ALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKH---------------SIKVTTSEQMGLLIEE 161 (515)
Q Consensus 109 ------------~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~---------------~~~~~~~~~v~~~l~~ 161 (515)
..++.+++++|.+.+... ++.++... ......... ........++.++++.
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~ 330 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKG-ANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAG 330 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-cccccccc-ccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 012235555554322111 11111100 000000000 0011334567788999
Q ss_pred cCCc-ccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCC
Q psy10236 162 LGLT-QVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPP 240 (515)
Q Consensus 162 lgL~-~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~ 240 (515)
+|+. +..++++++|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ + .|||+++|+.
T Consensus 331 lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~------~tviivsHd~ 401 (718)
T PLN03073 331 LSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---P------KTFIVVSHAR 401 (718)
T ss_pred CCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---C------CEEEEEECCH
Confidence 9996 5678999999999999999999999999999999999999999999999999986 3 6899999984
Q ss_pred chHHHhhccEEEEEeCCeEE-EecCccch
Q psy10236 241 TYEIFTMISRVLLVSGGRTM-YSGKRRDM 268 (515)
Q Consensus 241 ~~~i~~~~Drv~vL~~G~iv-~~G~~~~~ 268 (515)
..+..+||++++|++|+++ +.|+.++.
T Consensus 402 -~~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 402 -EFLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred -HHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 5788899999999999996 67766543
No 365
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.1e-32 Score=328.20 Aligned_cols=196 Identities=20% Similarity=0.282 Sum_probs=157.0
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHH
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQT 132 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~ 132 (515)
++.+|+|+|+++++||+++|+|||||||||||++|+|.++|++|+|.++ +.++|++|++.++ +.||+||
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~----------~~i~yv~Q~~~l~-~~Tv~en 740 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE----------RSIAYVPQQAWIM-NATVRGN 740 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC----------CeEEEEeCCCccC-CCcHHHH
Confidence 4569999999999999999999999999999999999999999999863 4699999998876 5699999
Q ss_pred HHHHhhcCCCCCCCchhhHHHHHHHHHHHc--CCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhH
Q psy10236 133 LTFYSHLRRPPKHSIKVTTSEQMGLLIEEL--GLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDT 210 (515)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~ 210 (515)
+.+..... .....+......+++.++.+ |+....+.+..+|||||||||+|||||+.+|+++||||||++||+.++
T Consensus 741 I~~~~~~~--~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~ 818 (1560)
T PTZ00243 741 ILFFDEED--AARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVG 818 (1560)
T ss_pred HHcCChhh--HHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHH
Confidence 99853110 00000000011234455666 776667788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 211 FFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 211 ~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
..+++.+.....+| +|+|+++|++. ....||+|++|++|++++.|+.+++.
T Consensus 819 ~~i~~~~~~~~~~~------~TvIlvTH~~~--~~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 819 ERVVEECFLGALAG------KTRVLATHQVH--VVPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred HHHHHHHHHHhhCC------CEEEEEeCCHH--HHHhCCEEEEEECCEEEEecCHHHHH
Confidence 88887543222234 89999999863 45789999999999999999988765
No 366
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=9e-32 Score=262.61 Aligned_cols=192 Identities=18% Similarity=0.223 Sum_probs=137.0
Q ss_pred CCcceeeeeEEEEecCeEEEEEcCCCchHHHHH-HHHhCCCCCCeeEEEECC-------ee---C--Ch-hhhc-cceEE
Q psy10236 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAIL-DALAGRNDAKAFQVILNG-------HS---I--PL-NALK-RRLVY 116 (515)
Q Consensus 52 ~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl-~~L~G~~~~~~G~I~~~G-------~~---~--~~-~~~~-~~i~y 116 (515)
.+..+|+||||++++||++||+|+||||||||+ ..|.. +|++.+.+ .. + .. ...+ ....+
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAI 80 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceE
Confidence 356789999999999999999999999999995 44431 23221110 00 0 00 0111 12333
Q ss_pred EecCC--CCCCCCCHHH---HHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-cccCcccCCChHHHHHHHHHHHHH
Q psy10236 117 VRSQS--FLSPELNVAQ---TLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-VLSTRVGRLTTSELKRLSIACCLM 190 (515)
Q Consensus 117 v~q~~--~~~~~lTv~e---~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSGGerqRv~IA~aL~ 190 (515)
..|++ ...|..+|.. ...+...+.. .....++ .++++.+||.+ ..++++.+|||||||||+||++|+
T Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~ 153 (226)
T cd03270 81 AIDQKTTSRNPRSTVGTVTEIYDYLRLLFA------RVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIG 153 (226)
T ss_pred EecCCCCCCCCCccHHHHHHHHHHHHHHhh------hhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHH
Confidence 33333 2344556543 2222211111 1112223 56899999986 589999999999999999999999
Q ss_pred hCC--CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE------eCCeEEEe
Q psy10236 191 SHA--DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV------SGGRTMYS 262 (515)
Q Consensus 191 ~~p--~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL------~~G~iv~~ 262 (515)
.+| +++||||||+|||+.++..+.+.|++++++| .|+|+++|++. ++ ++||++++| ++|+++++
T Consensus 154 ~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g------~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 154 SGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLG------NTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred hCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCC------CEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEec
Confidence 998 5999999999999999999999999997766 78999999863 44 699999999 99999987
Q ss_pred c
Q psy10236 263 G 263 (515)
Q Consensus 263 G 263 (515)
|
T Consensus 226 g 226 (226)
T cd03270 226 G 226 (226)
T ss_pred C
Confidence 6
No 367
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.98 E-value=2.1e-32 Score=245.58 Aligned_cols=130 Identities=32% Similarity=0.533 Sum_probs=118.8
Q ss_pred eeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceEEEecCCCCCCCCCHHHHH
Q psy10236 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLVYVRSQSFLSPELNVAQTL 133 (515)
Q Consensus 57 L~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTv~e~l 133 (515)
|+|+|+++++||+++|+|+||||||||+++|+|..+|++|+|.++|+++.. ...++.++|++|++.+++.+||.||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 799999999999999999999999999999999999999999999999854 4567889999999999999999999
Q ss_pred HHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcc----cCCChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q psy10236 134 TFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRV----GRLTTSELKRLSIACCLMSHADILLLDCPTV 203 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v----~~LSGGerqRv~IA~aL~~~p~lLlLDEPts 203 (515)
..+++++++++.+++.+..++.+ .+|||||||||+||+||+.+|+++||||||+
T Consensus 80 ----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ----------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ----------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ----------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 12355778999999887777777 8999999999999999999999999999996
No 368
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=4.1e-32 Score=244.43 Aligned_cols=207 Identities=19% Similarity=0.209 Sum_probs=168.5
Q ss_pred eEEEEeeEEeCCC---C--CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCe--eCC-----
Q psy10236 39 HLQVRGLEVPPSS---K--NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGH--SIP----- 106 (515)
Q Consensus 39 ~L~v~~l~~~~~~---~--~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~--~~~----- 106 (515)
.|.++|++|++.- + .-++++|+||+++.||++++-||||+|||||||+|-|-+.|++|+|.+.-. -++
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 5889999887521 2 246899999999999999999999999999999999999999999988532 221
Q ss_pred h----hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-cccCcccCCChHHHH
Q psy10236 107 L----NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-VLSTRVGRLTTSELK 181 (515)
Q Consensus 107 ~----~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSGGerq 181 (515)
. .-.++.+|||.|.-...|..+..|-+.-...-++.. .+..+.++..++.++++.+ ..+-.+.+.||||||
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~----~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQ 159 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP----REVARAKAADLLTRLNLPERLWSLAPATFSGGEQQ 159 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCC----HHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchhe
Confidence 1 124567999999888889888888776655444322 3566778899999999964 556678899999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC
Q psy10236 182 RLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG 256 (515)
Q Consensus 182 Rv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~ 256 (515)
||.|||.++.+-+||+|||||+.||..++..++++|++-+.+| ..+|=+-|+ .+--...|||++-+..
T Consensus 160 RVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~G------aAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 160 RVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARG------AALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred ehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcC------ceEEEeecc-HHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999987776 566666665 3334668999988753
No 369
>KOG0054|consensus
Probab=99.97 E-value=2.9e-31 Score=305.58 Aligned_cols=217 Identities=19% Similarity=0.291 Sum_probs=183.0
Q ss_pred CCCCcC---eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--
Q psy10236 33 RPEFFP---HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-- 107 (515)
Q Consensus 33 ~~~~~~---~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-- 107 (515)
.|..|| .++++|++.+|..+...||+|||++|+|||-+||+|+.|||||||.++|-.+..|.+|+|.+||.++..
T Consensus 1129 pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~ig 1208 (1381)
T KOG0054|consen 1129 PPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIG 1208 (1381)
T ss_pred CCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeeccccc
Confidence 466777 699999999997666789999999999999999999999999999999999999999999999999853
Q ss_pred -hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccc-------ccCccc----CC
Q psy10236 108 -NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV-------LSTRVG----RL 175 (515)
Q Consensus 108 -~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v~----~L 175 (515)
..+|++++.+||++.+|.. |+|.||.=.. +..++++-+.|+..+|.+. +|..+. ++
T Consensus 1209 L~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~-----------e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~ 1276 (1381)
T KOG0054|consen 1209 LHDLRSRLSIIPQDPVLFSG-TVRFNLDPFD-----------EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENF 1276 (1381)
T ss_pred HHHHHhcCeeeCCCCceecC-ccccccCccc-----------ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccC
Confidence 5789999999999999987 9999985321 1223445555555555433 334443 49
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe
Q psy10236 176 TTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS 255 (515)
Q Consensus 176 SGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~ 255 (515)
|-||||.+++||||+++++||+|||.|+++|+.+-..|-+.||+-=+ +.||+.+.|... .+.+ ||||+||+
T Consensus 1277 SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-------dcTVltIAHRl~-TVmd-~DrVlVld 1347 (1381)
T KOG0054|consen 1277 SVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-------DCTVLTIAHRLN-TVMD-SDRVLVLD 1347 (1381)
T ss_pred ChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-------CCeEEEEeeccc-hhhh-cCeEEEee
Confidence 99999999999999999999999999999999999999999997543 278888888754 4554 89999999
Q ss_pred CCeEEEecCccchHH
Q psy10236 256 GGRTMYSGKRRDMLP 270 (515)
Q Consensus 256 ~G~iv~~G~~~~~~~ 270 (515)
+|+++++|+|.++++
T Consensus 1348 ~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1348 AGRVVEFDSPAELLS 1362 (1381)
T ss_pred CCeEeecCChHHHHh
Confidence 999999999999874
No 370
>KOG0054|consensus
Probab=99.97 E-value=1.9e-30 Score=298.92 Aligned_cols=205 Identities=21% Similarity=0.303 Sum_probs=175.2
Q ss_pred CcCeEEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccce
Q psy10236 36 FFPHLQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRL 114 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i 114 (515)
..+.++++|.+++.... ....|+||||+|++|+.+||+|+-|||||+||.+|.|..+..+|+|.++|. +
T Consensus 515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----------i 584 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----------V 584 (1381)
T ss_pred CCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe----------E
Confidence 44579999999986542 344899999999999999999999999999999999999999999999985 9
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcc-------c----CCChHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRV-------G----RLTTSELKRL 183 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v-------~----~LSGGerqRv 183 (515)
+||+|++.++.. ||+|||.|+..+ .+++.+++++...|++..+..+ | +||||||||+
T Consensus 585 aYv~Q~pWI~ng-TvreNILFG~~~-----------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRI 652 (1381)
T KOG0054|consen 585 AYVPQQPWIQNG-TVRENILFGSPY-----------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRI 652 (1381)
T ss_pred EEeccccHhhCC-cHHHhhhcCccc-----------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHH
Confidence 999999988754 999999996432 3467788888888865544443 3 3999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
++|||+.++++|++||.|.|++|......+.+..-.-.-+ +||+|++||+. +....||.|++|++|+++..|
T Consensus 653 sLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~------~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~G 724 (1381)
T KOG0054|consen 653 SLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLR------GKTVILVTHQL--QFLPHADQIIVLKDGKIVESG 724 (1381)
T ss_pred HHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhc------CCEEEEEeCch--hhhhhCCEEEEecCCeEeccc
Confidence 9999999999999999999999999988888766533323 38999999974 688999999999999999999
Q ss_pred CccchHH
Q psy10236 264 KRRDMLP 270 (515)
Q Consensus 264 ~~~~~~~ 270 (515)
+.+|+.+
T Consensus 725 ty~el~~ 731 (1381)
T KOG0054|consen 725 TYEELLK 731 (1381)
T ss_pred CHHHHHh
Confidence 9999873
No 371
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=2.5e-30 Score=256.29 Aligned_cols=193 Identities=15% Similarity=0.236 Sum_probs=154.0
Q ss_pred ceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHh--------CCC--CCC-----------eeEEEECCeeCChh-----
Q psy10236 55 CFVQGVSFEVKGSEVLAIMSTSALEGKAILDALA--------GRN--DAK-----------AFQVILNGHSIPLN----- 108 (515)
Q Consensus 55 ~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~--------G~~--~~~-----------~G~I~~~G~~~~~~----- 108 (515)
.-|+|||.+|+.|++++|.|+||||||||++.+. +.. .|. +--|.++..++...
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4599999999999999999999999999998552 110 121 11367777776211
Q ss_pred --------hhcc----------------ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCC
Q psy10236 109 --------ALKR----------------RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGL 164 (515)
Q Consensus 109 --------~~~~----------------~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 164 (515)
.+|+ .+.|..++...+..|||.|++.|...+. ..+++.++++.+||
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~----------~~~~~~~~L~~vgL 158 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP----------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh----------hHHHHHHHHHHcCC
Confidence 1111 1445556666678899999999876532 12456779999999
Q ss_pred cc-cccCcccCCChHHHHHHHHHHHHHhC---CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCC
Q psy10236 165 TQ-VLSTRVGRLTTSELKRLSIACCLMSH---ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPP 240 (515)
Q Consensus 165 ~~-~~~~~v~~LSGGerqRv~IA~aL~~~---p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~ 240 (515)
.. ..++++.+||||||||+.||++|+.+ |++++|||||+|||+..+..+.+.|++++++| .|+|+++|++
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g------~tvIiitH~~ 232 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKG------NTVVVIEHNL 232 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCC------CEEEEEeCCH
Confidence 87 58999999999999999999999996 79999999999999999999999999998766 7999999986
Q ss_pred chHHHhhccEEEEE------eCCeEEEecCc
Q psy10236 241 TYEIFTMISRVLLV------SGGRTMYSGKR 265 (515)
Q Consensus 241 ~~~i~~~~Drv~vL------~~G~iv~~G~~ 265 (515)
. ..+.||++++| ++|++++.|++
T Consensus 233 ~--~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 233 D--VIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred H--HHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 3 34679999999 89999999874
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=4.9e-30 Score=275.96 Aligned_cols=203 Identities=22% Similarity=0.268 Sum_probs=170.8
Q ss_pred CCcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccce
Q psy10236 35 EFFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRL 114 (515)
Q Consensus 35 ~~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i 114 (515)
...+.++++|+++.|. +++.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|+|.+.-. -.+
T Consensus 317 ~g~~vl~~~~~~~~y~-~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~--------v~i 387 (530)
T COG0488 317 LGKLVLEFENVSKGYD-GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET--------VKI 387 (530)
T ss_pred CCCeeEEEeccccccC-CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc--------eEE
Confidence 3456899999999874 3378999999999999999999999999999999999999999999987432 359
Q ss_pred EEEecCC-CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 115 VYVRSQS-FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 115 ~yv~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
||..|+. .+.++.|+.|++.-.. +. ..+..+...|..|++. +...++++.||||||.||.+|+.++.+
T Consensus 388 gyf~Q~~~~l~~~~t~~d~l~~~~----~~------~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~ 457 (530)
T COG0488 388 GYFDQHRDELDPDKTVLEELSEGF----PD------GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQP 457 (530)
T ss_pred EEEEehhhhcCccCcHHHHHHhhC----cc------ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccC
Confidence 9999976 4457889999886432 11 1146788899999996 567899999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe-cCccc
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS-GKRRD 267 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~-G~~~~ 267 (515)
|.+|||||||+.||..+...+.+.|.++. .|||+++|+. .-+..+|++++.+.+ ++..+ |..++
T Consensus 458 pNvLiLDEPTNhLDi~s~~aLe~aL~~f~---------Gtvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~ 522 (530)
T COG0488 458 PNLLLLDEPTNHLDIESLEALEEALLDFE---------GTVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYED 522 (530)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHhCC---------CeEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHHH
Confidence 99999999999999999999999999873 4888888874 578999999999988 55444 55443
No 373
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.97 E-value=1.8e-29 Score=260.96 Aligned_cols=224 Identities=23% Similarity=0.295 Sum_probs=192.5
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeC----Ch-hhhc
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI----PL-NALK 111 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~----~~-~~~~ 111 (515)
.+.|+++||++... .+...+++|||+|++|||+||.|-.|.|.+.|+.+|+|+.++.+|+|.++|+++ +. ...+
T Consensus 255 ~~vL~V~~L~v~~~-~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 255 EVVLEVEDLSVKDR-RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred CeEEEEeeeEeecC-CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 56899999998753 345789999999999999999999999999999999999998889999999996 22 2356
Q ss_pred cceEEEecCC---CCCCCCCHHHHHHHHhhcCCC---CCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHH
Q psy10236 112 RRLVYVRSQS---FLSPELNVAQTLTFYSHLRRP---PKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLS 184 (515)
Q Consensus 112 ~~i~yv~q~~---~~~~~lTv~e~l~~~~~~~~~---~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~ 184 (515)
..++|||.+. .+.+.+|+.||+.+...-+.+ .........++.+.++++++++. ...+.++.+||||++||+-
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~I 413 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLI 413 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhh
Confidence 7899999864 688999999999876543211 11123455677889999999996 5677889999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
+||+|..+|++|++.+||.|||..+...+.+.|.+.+++| +.|++++.+ .+|++.+||||.||++|+++...+
T Consensus 414 laREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G------~AVLLiS~d-LDEil~lsDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 414 LARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAG------KAVLLISED-LDEILELSDRIAVIYEGRIVGIVP 486 (501)
T ss_pred hhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcC------CEEEEEehh-HHHHHHhhheeeeeeCCceecccc
Confidence 9999999999999999999999999999999999999987 778777766 679999999999999999999988
Q ss_pred ccch
Q psy10236 265 RRDM 268 (515)
Q Consensus 265 ~~~~ 268 (515)
++++
T Consensus 487 ~~~~ 490 (501)
T COG3845 487 PEEA 490 (501)
T ss_pred cccC
Confidence 8764
No 374
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=4.8e-30 Score=245.21 Aligned_cols=165 Identities=14% Similarity=0.106 Sum_probs=133.7
Q ss_pred e-eeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCC---------eeEEEECCeeCChhhhccceEEEecCCCCCCC
Q psy10236 57 V-QGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAK---------AFQVILNGHSIPLNALKRRLVYVRSQSFLSPE 126 (515)
Q Consensus 57 L-~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~---------~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~ 126 (515)
+ +++++++++| +++|+||||||||||+++|+|+.++. .|++.++|++......++.++|++|++..+
T Consensus 12 ~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~-- 88 (197)
T cd03278 12 FADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR-- 88 (197)
T ss_pred cCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc--
Confidence 5 7889999999 99999999999999999999987654 346777787654333457899999987655
Q ss_pred CCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH----hCCCEEEEeCCC
Q psy10236 127 LNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM----SHADILLLDCPT 202 (515)
Q Consensus 127 lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~----~~p~lLlLDEPt 202 (515)
|. .. ..++++++++. .+..++++.+||||||||++||++++ .+|++++|||||
T Consensus 89 --------~~--~~----------~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 89 --------YS--II----------SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred --------ee--EE----------ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 11 00 12355666666 56678899999999999999999997 467999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC
Q psy10236 203 VFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG 256 (515)
Q Consensus 203 sgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~ 256 (515)
+|||+..+..+.+.|+++++ + .+||+++|++. ..+.||+++.+..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~-~------~tiIiitH~~~--~~~~~d~v~~~~~ 190 (197)
T cd03278 146 AALDDANVERFARLLKEFSK-E------TQFIVITHRKG--TMEAADRLYGVTM 190 (197)
T ss_pred ccCCHHHHHHHHHHHHHhcc-C------CEEEEEECCHH--HHhhcceEEEEEe
Confidence 99999999999999999865 3 68889999863 4578999999964
No 375
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=1e-30 Score=236.37 Aligned_cols=208 Identities=21% Similarity=0.329 Sum_probs=180.4
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~ 115 (515)
+++++|+.... -|-.+|+++..||++-++|||||||||||-.++|+. |.+|+|.++|.++.. .++.+.-+
T Consensus 3 l~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 3 LMQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 57888987632 388899999999999999999999999999999985 468999999999843 35677788
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHh----
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMS---- 191 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~---- 191 (515)
|..|+..-...|.|..++.++ .| ..+....++++...++|++...+.++.|||||-|||-+|...+.
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~----qP-----~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd 146 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLH----QP-----DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPD 146 (248)
T ss_pred HHhhccCCcchhhhhhhhhhc----Cc-----hHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCC
Confidence 998887766778999888753 22 23455678889999999999999999999999999999987764
Q ss_pred -CC--CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 192 -HA--DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 192 -~p--~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
|| ++|+||||.++||...+..+..+|.+++.+| .+||++.|+. ....+.+|++.+|+.|+++..|..+++
T Consensus 147 ~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G------~~vims~HDL-NhTLrhA~~~wLL~rG~l~~~G~~~eV 219 (248)
T COG4138 147 ANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQG------LAIVMSSHDL-NHTLRHAHRAWLLKRGKLLASGRREEV 219 (248)
T ss_pred CCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCC------cEEEEeccch-hhHHHHHHHHHHHhcCeEEeecchhhh
Confidence 44 7999999999999999999999999999987 9999999985 478899999999999999999999987
Q ss_pred H
Q psy10236 269 L 269 (515)
Q Consensus 269 ~ 269 (515)
+
T Consensus 220 l 220 (248)
T COG4138 220 L 220 (248)
T ss_pred c
Confidence 6
No 376
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=4.1e-29 Score=246.14 Aligned_cols=196 Identities=12% Similarity=0.170 Sum_probs=141.7
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHh----------------CCCCCCee-------
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALA----------------GRNDAKAF------- 96 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~----------------G~~~~~~G------- 96 (515)
++++|.. + ++++.++++++ |++++|+||||||||||+++|+ +++.+.+|
T Consensus 4 i~~~nfk-s--y~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~ 75 (243)
T cd03272 4 VIIQGFK-S--YKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAY 75 (243)
T ss_pred EEEeCcc-C--cccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEE
Confidence 5566642 2 35667888887 7899999999999999999998 33445555
Q ss_pred -EEEECCee----CC--hhhhccceEEEecCCCCCC-CCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccc
Q psy10236 97 -QVILNGHS----IP--LNALKRRLVYVRSQSFLSP-ELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVL 168 (515)
Q Consensus 97 -~I~~~G~~----~~--~~~~~~~i~yv~q~~~~~~-~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 168 (515)
+|.+++.+ +. ....++.+++++|+..+++ ..|..|...+...+............+. ++.+.+++.+..
T Consensus 76 v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg---~i~~l~~l~~~~ 152 (243)
T cd03272 76 VEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQG---KINSLTNMKQDE 152 (243)
T ss_pred EEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcC---chHHhhhccccc
Confidence 66666532 11 1235677899988877776 4677776655544322111000000011 233445666667
Q ss_pred cCcccCCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHH
Q psy10236 169 STRVGRLTTSELKRLSIACCLMS----HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEI 244 (515)
Q Consensus 169 ~~~v~~LSGGerqRv~IA~aL~~----~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i 244 (515)
+.++.+||||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ + +++|+++|.+ ++
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~------~~ii~~~h~~--~~ 223 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-G------AQFITTTFRP--EL 223 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-C------CEEEEEecCH--HH
Confidence 88999999999999999999974 5899999999999999999999999999865 4 6788888763 68
Q ss_pred HhhccEEEEEe
Q psy10236 245 FTMISRVLLVS 255 (515)
Q Consensus 245 ~~~~Drv~vL~ 255 (515)
.++||++++|.
T Consensus 224 ~~~~d~i~~l~ 234 (243)
T cd03272 224 LEVADKFYGVK 234 (243)
T ss_pred HhhCCEEEEEE
Confidence 89999999984
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=2e-29 Score=243.50 Aligned_cols=190 Identities=11% Similarity=0.140 Sum_probs=142.9
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEe
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVR 118 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~ 118 (515)
.|+++|.. +| +++.+++++++ ++++|+||||||||||+++|. .++|.+.. ...++++++++
T Consensus 5 ~l~l~nfk-~~--~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-~~~~~~i~~~~ 65 (212)
T cd03274 5 KLVLENFK-SY--AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-KMRQKKLSDLI 65 (212)
T ss_pred EEEEECcc-cC--CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-HhhhhhHHHHh
Confidence 46777765 33 57779999987 899999999999999999997 33454331 11235689999
Q ss_pred cCCCCCCCCCHHHHHHHHhhcCCCC----CCCchhhHHH--HHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHh-
Q psy10236 119 SQSFLSPELNVAQTLTFYSHLRRPP----KHSIKVTTSE--QMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMS- 191 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~- 191 (515)
|+..+++.+|+.+++.+........ .......... ...++++.++|.+..+++++.||+|||||++||++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~ 145 (212)
T cd03274 66 HNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALH 145 (212)
T ss_pred cCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhc
Confidence 9988889999998876655432100 0000000000 12456678889888999999999999999999999974
Q ss_pred ---CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC
Q psy10236 192 ---HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG 256 (515)
Q Consensus 192 ---~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~ 256 (515)
+|+++++||||+|||+.++..+.+.|+++++. .++|+++|++ ++.++||++++|+.
T Consensus 146 ~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~-------~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 146 HYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKN-------AQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCC-------CEEEEEECcH--HHHHhCCEEEEEEe
Confidence 58999999999999999999999999998643 4566666763 78899999999964
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=7.5e-28 Score=238.65 Aligned_cols=178 Identities=15% Similarity=0.118 Sum_probs=139.0
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCCCCCC-eeEEEECCe-eCCh-----hhhccceEEEecCC---------CCCCCCCHH
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGRNDAK-AFQVILNGH-SIPL-----NALKRRLVYVRSQS---------FLSPELNVA 130 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~~~~~-~G~I~~~G~-~~~~-----~~~~~~i~yv~q~~---------~~~~~lTv~ 130 (515)
..+++|+||||||||||+++|++++.+. .|+++..|. ++.. ...+..+++++|++ .+.|.+||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 4499999999999999999999999876 568888776 3211 11244788999974 345678998
Q ss_pred HHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc--------------------ccccCcccCCChHHHHHHHHHHHHH
Q psy10236 131 QTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT--------------------QVLSTRVGRLTTSELKRLSIACCLM 190 (515)
Q Consensus 131 e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--------------------~~~~~~v~~LSGGerqRv~IA~aL~ 190 (515)
+++......+.... .+....+++.++++.+|+. +..++++.+||||||||++||++|+
T Consensus 105 r~I~~~~~~~~~in--~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 105 RQIVLGGTNKYLIN--GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEcCCceEEEEC--CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 88765432111000 0123347788899999996 4457889999999999999999998
Q ss_pred ----hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe
Q psy10236 191 ----SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS 255 (515)
Q Consensus 191 ----~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~ 255 (515)
.+|+++++||||+|||+.++..+.+.|+++++ | .++|+++|. .++.+.||+++-+.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~-g------~~ii~iSH~--~~~~~~~d~v~~~~ 242 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK-G------SQFIVVSLK--EGMFNNANVLFRTR 242 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC-C------CEEEEEECC--HHHHHhCCEEEEEE
Confidence 57899999999999999999999999999853 4 789999997 47888999998874
No 379
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.94 E-value=9.5e-27 Score=225.20 Aligned_cols=192 Identities=13% Similarity=0.035 Sum_probs=135.0
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEe-cCeEEEEEcCCCchHHHHHHHHhCCC-CCCeeEEEECC--eeCChhhhccce
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVK-GSEVLAIMSTSALEGKAILDALAGRN-DAKAFQVILNG--HSIPLNALKRRL 114 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~-~Gei~aIiG~nGaGKSTLl~~L~G~~-~~~~G~I~~~G--~~~~~~~~~~~i 114 (515)
.|+++|.. +|. +. ++++|... +|++++|+||||||||||+++|++.+ .+..+....+. ..+.....+..+
T Consensus 5 ~i~l~nf~-~y~--~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v 78 (213)
T cd03279 5 KLELKNFG-PFR--EE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEV 78 (213)
T ss_pred EEEEECCc-CcC--Cc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEE
Confidence 47888876 442 22 56667644 58999999999999999999999643 33334333321 111222345568
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHh---
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMS--- 191 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~--- 191 (515)
++++|...... ++..+. . .......+. ..+...++.+..++++++||||||||++||++|+.
T Consensus 79 ~~~f~~~~~~~--~~~r~~-------g----l~~~~~~~~--~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~ 143 (213)
T cd03279 79 SFTFQLGGKKY--RVERSR-------G----LDYDQFTRI--VLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEV 143 (213)
T ss_pred EEEEEECCeEE--EEEEec-------C----CCHHHHHHh--hhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHH
Confidence 88888753211 111110 0 001111111 12444556778899999999999999999999985
Q ss_pred -------CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCe
Q psy10236 192 -------HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258 (515)
Q Consensus 192 -------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~ 258 (515)
+|+++||||||+|||+.++..+.+.|+++++++ +|+|+++|++ ..+...||+++++++|.
T Consensus 144 ~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~------~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 144 LQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTEN------RMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred hhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC------CEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 578999999999999999999999999997655 7899999985 46788999999999875
No 380
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.6e-27 Score=239.06 Aligned_cols=202 Identities=18% Similarity=0.236 Sum_probs=164.3
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccc
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRR 113 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~ 113 (515)
|..++++|+.+.|.... --+..||++|++||++-|+|.||||||||++.|+|+.+|++|+|++||++++. ++.|+-
T Consensus 320 ~~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~L 398 (546)
T COG4615 320 WKTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKL 398 (546)
T ss_pred ccceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHH
Confidence 77899999999885333 46899999999999999999999999999999999999999999999999954 356666
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccc---ccCccc--CCChHHHHHHHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV---LSTRVG--RLTTSELKRLSIACC 188 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~v~--~LSGGerqRv~IA~a 188 (515)
.+-|+.|..+|+.+ .++.. ....+.++.+++++.|.+. .|.... .||.|||||+++-.|
T Consensus 399 fSavFsDyhLF~~l------------l~~e~----~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~A 462 (546)
T COG4615 399 FSAVFSDYHLFDQL------------LGPEG----KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLA 462 (546)
T ss_pred HHHHhhhHhhhHhh------------hCCcc----CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHH
Confidence 66666665555431 12211 1234567788888888643 344333 499999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHH-HhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGW-ASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l-~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
++-+.+|+++||=-+.-||.-++.+.+.+--+ +++| +||+.++|++ .-+..+||++.+++|++++.-
T Consensus 463 llEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qG------KTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 463 LLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQG------KTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhC------CeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 99999999999999999999999999887654 5556 9999999975 468899999999999998754
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=5.3e-27 Score=225.41 Aligned_cols=168 Identities=17% Similarity=0.182 Sum_probs=128.0
Q ss_pred eeEEEEecCeEEEEEcCCCchHHHHHHHHh----CCCCCCeeEEEECCeeCChhhhccceEEEecCC-----CCCCCCCH
Q psy10236 59 GVSFEVKGSEVLAIMSTSALEGKAILDALA----GRNDAKAFQVILNGHSIPLNALKRRLVYVRSQS-----FLSPELNV 129 (515)
Q Consensus 59 ~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~----G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~-----~~~~~lTv 129 (515)
..++++.+| +++|+||||||||||+++|. |...+++|.+..+...+.....+..+++++|++ .....+|+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 344667788 99999999999999999994 998888887762222223334456789998876 33344577
Q ss_pred HHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHH------HHHHHHHHhCCCEEEEeCCCC
Q psy10236 130 AQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKR------LSIACCLMSHADILLLDCPTV 203 (515)
Q Consensus 130 ~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqR------v~IA~aL~~~p~lLlLDEPts 203 (515)
.|++.+. + +..+++.+ ++.+++||+||+|| ++||++++.+|+++++||||+
T Consensus 94 ~~~~~~~-----~---------~~~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~ 150 (204)
T cd03240 94 LENVIFC-----H---------QGESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTT 150 (204)
T ss_pred hhceeee-----c---------hHHHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcc
Confidence 7776442 0 11122222 77889999999996 789999999999999999999
Q ss_pred CCChhhHH-HHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe-CC
Q psy10236 204 FMDIFDTF-FLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS-GG 257 (515)
Q Consensus 204 gLD~~~~~-~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~-~G 257 (515)
+||+..+. .+.+.|++++++. +.+||+++|++ +....||+++.|. +|
T Consensus 151 ~LD~~~~~~~l~~~l~~~~~~~-----~~~iiiitH~~--~~~~~~d~i~~l~~~~ 199 (204)
T cd03240 151 NLDEENIEESLAEIIEERKSQK-----NFQLIVITHDE--ELVDAADHIYRVEKDG 199 (204)
T ss_pred ccCHHHHHHHHHHHHHHHHhcc-----CCEEEEEEecH--HHHhhCCEEEEEeeCC
Confidence 99999999 9999999997752 27899999975 3557899999994 44
No 382
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.94 E-value=8.8e-26 Score=256.75 Aligned_cols=125 Identities=19% Similarity=0.302 Sum_probs=107.9
Q ss_pred CCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-cccCcccCCChHHHHHHHHHHHHHhCC---CEEEEeCCC
Q psy10236 127 LNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-VLSTRVGRLTTSELKRLSIACCLMSHA---DILLLDCPT 202 (515)
Q Consensus 127 lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSGGerqRv~IA~aL~~~p---~lLlLDEPt 202 (515)
|||.|++.|...+.. ..+..+.++.+||.. ..++++.+|||||+||+.||++|+.+| +++||||||
T Consensus 792 ltv~E~l~~f~~~~~----------i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPt 861 (943)
T PRK00349 792 MTVEEALEFFEAIPK----------IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPT 861 (943)
T ss_pred CcHHHHHHHHHhchh----------hhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCC
Confidence 788888888754321 123457899999986 579999999999999999999999999 999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE------eCCeEEEecCccchH
Q psy10236 203 VFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV------SGGRTMYSGKRRDML 269 (515)
Q Consensus 203 sgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL------~~G~iv~~G~~~~~~ 269 (515)
+|||+.++..+++.|+++.++| .|||+++|++. . ...||+++.| ++|++++.|+++++.
T Consensus 862 sGLD~~~~~~L~~~L~~l~~~G------~TVIiitH~~~-~-i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 862 TGLHFEDIRKLLEVLHRLVDKG------NTVVVIEHNLD-V-IKTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred CCCCHHHHHHHHHHHHHHHhCC------CEEEEEecCHH-H-HHhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 9999999999999999998766 89999999863 3 4679999999 799999999998775
No 383
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=1.4e-25 Score=264.96 Aligned_cols=215 Identities=15% Similarity=0.182 Sum_probs=157.8
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHH---------HHhCCCCCCe----e----EEEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILD---------ALAGRNDAKA----F----QVIL 100 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~---------~L~G~~~~~~----G----~I~~ 100 (515)
+.++++|++. ..|+|+|++|++||+++|.|+||||||||++ .|.|...+.. + -|.+
T Consensus 599 ~~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 599 GTLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred CeEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 3688888763 2699999999999999999999999999999 5566432211 1 1233
Q ss_pred CCeeCCh-------------hhhc---------cc-----eEEEecC---------------------------------
Q psy10236 101 NGHSIPL-------------NALK---------RR-----LVYVRSQ--------------------------------- 120 (515)
Q Consensus 101 ~G~~~~~-------------~~~~---------~~-----i~yv~q~--------------------------------- 120 (515)
+-.++.. ..+| +. ..|.++.
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 3332210 0111 00 1111111
Q ss_pred -----CCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccc-ccCcccCCChHHHHHHHHHHHHH---h
Q psy10236 121 -----SFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV-LSTRVGRLTTSELKRLSIACCLM---S 191 (515)
Q Consensus 121 -----~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSGGerqRv~IA~aL~---~ 191 (515)
...+...||.|+|.+...-.... ........+++ ++++.+||.+. .++++.+||||||||++||++|+ .
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~-f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~ 829 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKF-FLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSK 829 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHc-ccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCC
Confidence 12456789999998764311100 00122344455 58899999886 79999999999999999999998 6
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe------CCeEEEecCc
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS------GGRTMYSGKR 265 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~------~G~iv~~G~~ 265 (515)
+|+++||||||+|||+.++..+++.|++++++| .|||+++|++. .+ +.||++++|. +|+++..|++
T Consensus 830 ~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G------~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 830 KPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQG------HTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC------CEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 999999999999999999999999999998776 78999999863 45 8999999996 7999999999
Q ss_pred cchH
Q psy10236 266 RDML 269 (515)
Q Consensus 266 ~~~~ 269 (515)
+++.
T Consensus 902 eel~ 905 (1809)
T PRK00635 902 EELI 905 (1809)
T ss_pred HHHH
Confidence 8765
No 384
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.93 E-value=5.2e-25 Score=236.29 Aligned_cols=192 Identities=19% Similarity=0.241 Sum_probs=157.3
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEE
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~y 116 (515)
...++++|++...+ +++..|++.|+.+++||-+.|.|+||||||||+|+|+|+.+-.+|+|..- -...+-|
T Consensus 390 ~~~i~~~nl~l~~p-~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P--------~~~~~lf 460 (604)
T COG4178 390 DHGITLENLSLRTP-DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP--------ADSALLF 460 (604)
T ss_pred cceeEEeeeeEECC-CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC--------CCCceEE
Confidence 46799999999864 45689999999999999999999999999999999999999988988653 1235889
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCccc------CCChHHHHHHHHHHHHH
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVG------RLTTSELKRLSIACCLM 190 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~------~LSGGerqRv~IA~aL~ 190 (515)
+||.+.+... |.+|-+.++.... ....+.+.++|.++||.+..++.=. .||+||||||++||.|+
T Consensus 461 lpQ~PY~p~G-tLre~l~YP~~~~--------~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL 531 (604)
T COG4178 461 LPQRPYLPQG-TLREALCYPNAAP--------DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLL 531 (604)
T ss_pred ecCCCCCCCc-cHHHHHhCCCCCC--------CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHH
Confidence 9999987655 9999987753221 1234667889999999877655332 39999999999999999
Q ss_pred hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe
Q psy10236 191 SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS 255 (515)
Q Consensus 191 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~ 255 (515)
++|++++|||.|++||+.+...+++.|++--. +.|||-+.|.+ .+..+.++.+-+.
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp-------~~tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEELP-------DATVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHhhCC-------CCEEEEeccch--hhHHHHhhheeec
Confidence 99999999999999999999999999997322 36888888876 4677777766553
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=1e-25 Score=209.41 Aligned_cols=227 Identities=17% Similarity=0.190 Sum_probs=175.8
Q ss_pred CeEEEEeeEEeC--CCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC----CeeEEEECCeeC---Chh
Q psy10236 38 PHLQVRGLEVPP--SSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA----KAFQVILNGHSI---PLN 108 (515)
Q Consensus 38 ~~L~v~~l~~~~--~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~----~~G~I~~~G~~~---~~~ 108 (515)
|.|.++||+... +.+...+++++|+++..||+-|++|.||||||-..|+|+|..+. +.-..++++.++ +.+
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 457888888754 23456789999999999999999999999999999999998763 445667777665 233
Q ss_pred hhc----cceEEEecCCC--CCCCCCHHHHHHHHhhcCCCCCC--CchhhHHHHHHHHHHHcCCcc---cccCcccCCCh
Q psy10236 109 ALK----RRLVYVRSQSF--LSPELNVAQTLTFYSHLRRPPKH--SIKVTTSEQMGLLIEELGLTQ---VLSTRVGRLTT 177 (515)
Q Consensus 109 ~~~----~~i~yv~q~~~--~~~~lTv~e~l~~~~~~~~~~~~--~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSG 177 (515)
+.| +.+++++|++. +.|.-+|...+.-..-.+....+ ..-.-.+.++-+++.++|+.+ ....++.+|.-
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe 161 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE 161 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc
Confidence 333 45778899863 56666665444221111100000 000124567888999999964 45678899999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCC
Q psy10236 178 SELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGG 257 (515)
Q Consensus 178 GerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G 257 (515)
||-|+|.||.|++.+|++||.||||+.+|+.++.++..+|.++.+.. +++|++++|+. ..+.++||++-||+-|
T Consensus 162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~-----~TtILL~s~Dl-~~is~W~d~i~VlYCG 235 (330)
T COG4170 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNS-----NTTILLISHDL-QMISQWADKINVLYCG 235 (330)
T ss_pred CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccC-----CceEEEEcccH-HHHHHHhhheEEEEec
Confidence 99999999999999999999999999999999999999999998653 47888888874 5799999999999999
Q ss_pred eEEEecCccchHH
Q psy10236 258 RTMYSGKRRDMLP 270 (515)
Q Consensus 258 ~iv~~G~~~~~~~ 270 (515)
+-++.++.+++++
T Consensus 236 Q~~ESa~~e~l~~ 248 (330)
T COG4170 236 QTVESAPSEELVT 248 (330)
T ss_pred ccccccchhHHhc
Confidence 9999999988864
No 386
>KOG0927|consensus
Probab=99.93 E-value=1.1e-25 Score=234.00 Aligned_cols=204 Identities=17% Similarity=0.194 Sum_probs=162.4
Q ss_pred CCCcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccc
Q psy10236 34 PEFFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRR 113 (515)
Q Consensus 34 ~~~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~ 113 (515)
+.+.|.+.++|+++.|. ++..++++++|-+..++.+|++||||+|||||||++.|.+.|+.|.|.-.-+..
T Consensus 384 ~~p~pvi~~~nv~F~y~-~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~-------- 454 (614)
T KOG0927|consen 384 KIPPPVIMVQNVSFGYS-DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK-------- 454 (614)
T ss_pred CCCCCeEEEeccccCCC-CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccccc--------
Confidence 34567899999999885 334789999999999999999999999999999999999999999986544322
Q ss_pred eEEEecC--CCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHHHHH
Q psy10236 114 LVYVRSQ--SFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLM 190 (515)
Q Consensus 114 i~yv~q~--~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~aL~ 190 (515)
+++..|. +.+.-+.++.|++.-.. . .....+.+..++.++||. +..+.++++||+|||+||..|+.++
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~---~------~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKF---P------DEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAV 525 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhc---c------ccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHh
Confidence 2233332 33445567777664321 1 123456788899999998 6678888999999999999999999
Q ss_pred hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEE-EecCc
Q psy10236 191 SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTM-YSGKR 265 (515)
Q Consensus 191 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv-~~G~~ 265 (515)
..|.||+|||||+|||..+...+.+.|.++- .++|+++|+- --+.++++++.+..+|.+. +.|+.
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~~---------Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEFP---------GGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhccC---------Cceeeeechh-hHHHHHHHHhHhhccCceeecCccH
Confidence 9999999999999999999999999999873 3577777764 4688999999999877654 44543
No 387
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=3e-24 Score=243.86 Aligned_cols=125 Identities=20% Similarity=0.290 Sum_probs=104.9
Q ss_pred CCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-cccCcccCCChHHHHHHHHHHHHHh---CCCEEEEeCC
Q psy10236 126 ELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-VLSTRVGRLTTSELKRLSIACCLMS---HADILLLDCP 201 (515)
Q Consensus 126 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSGGerqRv~IA~aL~~---~p~lLlLDEP 201 (515)
+|||.|.+.|...+.. ..+..++++.+||.. ..++++.+|||||+||+.||++|+. +|++++||||
T Consensus 789 ~~tv~e~~~f~~~~~~----------i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEP 858 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPS----------ISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEP 858 (924)
T ss_pred CCcHHHHHHHHHhccc----------hhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECC
Confidence 4677777777654321 123457889999975 5799999999999999999999997 5999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE------eCCeEEEecCccch
Q psy10236 202 TVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV------SGGRTMYSGKRRDM 268 (515)
Q Consensus 202 tsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL------~~G~iv~~G~~~~~ 268 (515)
|+|||+.++..+.+.|+++.++| .|||+++|++. .+ ..||++++| ++|++++.|+++++
T Consensus 859 tsgLD~~~~~~L~~~L~~l~~~G------~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 859 TTGLHFDDIKKLLEVLQRLVDQG------NTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC------CEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999998766 89999999863 34 679999999 79999999998764
No 388
>KOG0927|consensus
Probab=99.92 E-value=3.6e-25 Score=230.17 Aligned_cols=215 Identities=17% Similarity=0.287 Sum_probs=149.0
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeE--EEECCeeCChhh---hc-
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQ--VILNGHSIPLNA---LK- 111 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~--I~~~G~~~~~~~---~~- 111 (515)
..+.+.|+++++ .++.+++|++|++.+|+-+||+|+|||||||+|++|+|...|..-+ ++.-.+++.... ..
T Consensus 74 ~dvk~~sls~s~--~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~ 151 (614)
T KOG0927|consen 74 RDVKIESLSLSF--HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQA 151 (614)
T ss_pred ccceeeeeeecc--CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHH
Confidence 369999999976 5788999999999999999999999999999999999999875433 333333331111 11
Q ss_pred ---------cceEEEecCCCCC-CC--CCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCC-cccccCcccCCChH
Q psy10236 112 ---------RRLVYVRSQSFLS-PE--LNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGL-TQVLSTRVGRLTTS 178 (515)
Q Consensus 112 ---------~~i~yv~q~~~~~-~~--lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~v~~LSGG 178 (515)
+++.|...+.... +. .--.+++. .++.. ........++.++|..+|- .+..++.+.+||||
T Consensus 152 v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~--~r~~~----~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgG 225 (614)
T KOG0927|consen 152 VVMETDHERKRLEYLAEDLAQACDDKEKDELDELY--ERLDE----MDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGG 225 (614)
T ss_pred HhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHH--HHHHh----hCchhHHHHHHHHHHhcCCCHhHHHHHhhccCch
Confidence 1111110000000 00 00000000 00000 0112234456667777776 57789999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCe
Q psy10236 179 ELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258 (515)
Q Consensus 179 erqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~ 258 (515)
+|+|+++||+|..+|++|+|||||++||..+...+-+.|.+..+ .++++++|. .+-+-.+|.+|+-|.+++
T Consensus 226 wrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--------~~lVi~sh~-QDfln~vCT~Ii~l~~kk 296 (614)
T KOG0927|consen 226 WRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--------IILVIVSHS-QDFLNGVCTNIIHLDNKK 296 (614)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--------ceEEEEecc-hhhhhhHhhhhheecccc
Confidence 99999999999999999999999999999999999999987632 255555554 457889999999999999
Q ss_pred -EEEecCccchH
Q psy10236 259 -TMYSGKRRDML 269 (515)
Q Consensus 259 -iv~~G~~~~~~ 269 (515)
+.|.|+.++..
T Consensus 297 l~~y~Gnydqy~ 308 (614)
T KOG0927|consen 297 LIYYEGNYDQYV 308 (614)
T ss_pred eeeecCCHHHHh
Confidence 55667766543
No 389
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.92 E-value=1.3e-24 Score=221.80 Aligned_cols=189 Identities=18% Similarity=0.217 Sum_probs=150.6
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEe
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVR 118 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~ 118 (515)
.++..++++++ ++ .-|+-=.++++.||+++++||||-||||+.++|+|.++|++|. .. .-+++|=|
T Consensus 342 lv~y~~~~k~~--g~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~-------~~~vSyKP 407 (591)
T COG1245 342 LVEYPDLKKTY--GD-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EE-------DLKVSYKP 407 (591)
T ss_pred eeecchheeec--Cc-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cc-------cceEeecc
Confidence 45566666654 32 2366666788889999999999999999999999999999987 21 23588888
Q ss_pred cCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEE
Q psy10236 119 SQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlL 198 (515)
|--.-..+.||.+.+.-...-... ......++++-|+|++..++++.+|||||.|||+||.+|.++++|++|
T Consensus 408 QyI~~~~~gtV~~~l~~~~~~~~~--------~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYll 479 (591)
T COG1245 408 QYISPDYDGTVEDLLRSAIRSAFG--------SSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLL 479 (591)
T ss_pred eeecCCCCCcHHHHHHHhhhhhcc--------cchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEe
Confidence 866555778999987654332111 112334688899999999999999999999999999999999999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe
Q psy10236 199 DCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS 255 (515)
Q Consensus 199 DEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~ 255 (515)
|||++-||+..+..+.+.||+..... ++|.+++-|+.. -+--++||++|..
T Consensus 480 DEPSA~LDvEqR~~vakvIRR~~e~~-----~kta~vVdHDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 480 DEPSAYLDVEQRIIVAKVIRRFIENN-----EKTALVVDHDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred cCchhhccHHHHHHHHHHHHHHHhhc-----CceEEEEeccee-hhhhhhceEEEEe
Confidence 99999999999999999999998764 478888888753 4566788888774
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.92 E-value=1.8e-24 Score=206.88 Aligned_cols=171 Identities=18% Similarity=0.144 Sum_probs=124.4
Q ss_pred eeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeC----ChhhhccceEEEecCCCCCCCCCHHHH
Q psy10236 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI----PLNALKRRLVYVRSQSFLSPELNVAQT 132 (515)
Q Consensus 57 L~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~----~~~~~~~~i~yv~q~~~~~~~lTv~e~ 132 (515)
++++++++.+| +.+|+||||||||||+.+|......... ....|... ........+.+.++.....+ |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~------~ 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA------N 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC------C
Confidence 57788888888 8899999999999999999743322211 00112211 00112344677777655543 1
Q ss_pred HHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHH----HhCCCEEEEeCCCCCCChh
Q psy10236 133 LTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCL----MSHADILLLDCPTVFMDIF 208 (515)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL----~~~p~lLlLDEPtsgLD~~ 208 (515)
+. ....+.+++++++. .+..++++++||+|||||++||+++ +.+|++++|||||+|||..
T Consensus 84 ---------~~----~~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 ---------PL----CVLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred ---------cC----CHHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 00 11224566777776 6778999999999999999999999 5899999999999999999
Q ss_pred hHHHHHHHHHHHHhC--CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCe
Q psy10236 209 DTFFLVEFLRGWASG--GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258 (515)
Q Consensus 209 ~~~~i~~~L~~l~~~--g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~ 258 (515)
++..+.+.|+++.++ + +.+|++++|+.. ++.++ |+|.+|..++
T Consensus 148 ~~~~~~~~l~~~~~~~~~-----~~~iii~th~~~-~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPG-----RQFIFITPQDIS-GLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCC-----cEEEEEECCccc-ccccc-cceeEEEecC
Confidence 999999999998653 2 258888888753 56654 9999998764
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=7.4e-24 Score=209.61 Aligned_cols=176 Identities=14% Similarity=0.079 Sum_probs=119.8
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCee-C-Chh--------hhccceEEEecCCCC-CCCCCHHHHH
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHS-I-PLN--------ALKRRLVYVRSQSFL-SPELNVAQTL 133 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~-~-~~~--------~~~~~i~yv~q~~~~-~~~lTv~e~l 133 (515)
.++ +++|+||||||||||+++|++...+..|+++.++.. + ... ...-.+.|..|+... .-..++.+..
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 344 999999999999999999999988777777654421 1 000 111123333332210 0000111110
Q ss_pred HHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccc----------------------ccCcccCCChHHHHHHHHHHHHHh
Q psy10236 134 TFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV----------------------LSTRVGRLTTSELKRLSIACCLMS 191 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~----------------------~~~~v~~LSGGerqRv~IA~aL~~ 191 (515)
. ..+... +....+.++++++.+|+... .++++.+||||||||++||++++.
T Consensus 100 ~---~~~ing----k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~ 172 (247)
T cd03275 100 S---SYRING----KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAI 172 (247)
T ss_pred e---EEEECC----EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHH
Confidence 0 000000 11223456788888988421 234458899999999999999987
Q ss_pred C----CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC
Q psy10236 192 H----ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG 256 (515)
Q Consensus 192 ~----p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~ 256 (515)
+ |+++|+||||+|||+..+..+.+.|++++++| .++|+++|++ ++.+.||++++|..
T Consensus 173 ~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g------~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 173 HSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPN------FQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred hccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCC------cEEEEEECCH--HHHhhCCeEEEEEe
Confidence 5 89999999999999999999999999997655 7899999973 57789999999953
No 392
>KOG0060|consensus
Probab=99.89 E-value=1.8e-22 Score=211.54 Aligned_cols=199 Identities=16% Similarity=0.197 Sum_probs=158.7
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYV 117 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv 117 (515)
..+++++++...+.++..+++|+||+|..|+-+.|.||||||||+|+|+++|+.+..+|.+.--.+.- -+.+-|+
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~-----~~~lffl 506 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG-----PKDLFFL 506 (659)
T ss_pred ceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-----CCceEEe
Confidence 57999999998765566788999999999999999999999999999999999999999987654322 1568999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCccc-----------CCChHHHHHHHHH
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVG-----------RLTTSELKRLSIA 186 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~-----------~LSGGerqRv~IA 186 (515)
||.+.+.-. |.+|.+.++..--.+. .+...++++.+.|+.++|.+..++--| .||+||+||++.|
T Consensus 507 PQrPYmt~G-TLRdQvIYP~~~~~~~---~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~A 582 (659)
T KOG0060|consen 507 PQRPYMTLG-TLRDQVIYPLKAEDMD---SKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFA 582 (659)
T ss_pred cCCCCcccc-chhheeeccCcccccc---ccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHH
Confidence 999876544 8999988764321111 112334667778888887765443322 3999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC
Q psy10236 187 CCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG 256 (515)
Q Consensus 187 ~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~ 256 (515)
|.+.++|++-+|||-||++|......+.+.++++ |.|.|-+.|.. .+.+.=|.++-|+.
T Consensus 583 RLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---------giT~iSVgHRk--SL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 583 RLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---------GITFISVGHRK--SLWKFHDYVLRMDG 641 (659)
T ss_pred HHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---------CCeEEEeccHH--HHHhhhhEEEEecC
Confidence 9999999999999999999999999999999875 36777777754 57777788888865
No 393
>KOG2355|consensus
Probab=99.89 E-value=2.5e-22 Score=186.40 Aligned_cols=212 Identities=17% Similarity=0.215 Sum_probs=164.4
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-h--------
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-N-------- 108 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~-------- 108 (515)
..++++|+.++|+ ...+++-|+|++++.|.-..++|.||||||||||+|+|..-...|.|.++|.+.-. .
T Consensus 12 ~aievsgl~f~y~-~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 12 FAIEVSGLQFKYK-VSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred ceEEEeccEEecc-cCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 3699999999985 45589999999999999999999999999999999999887777999999986411 0
Q ss_pred -----hhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHH
Q psy10236 109 -----ALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRL 183 (515)
Q Consensus 109 -----~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv 183 (515)
.+.+.++.-. +..+..++++.+.| |+.. +. + -++-+++++.++++ ..-+.+.+|-||||||
T Consensus 91 ~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV~--g~-----d---p~Rre~LI~iLDId--l~WRmHkvSDGqrRRV 156 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVG--GD-----D---PERREKLIDILDID--LRWRMHKVSDGQRRRV 156 (291)
T ss_pred eEecccccccccccc-cccccccccHHHHH-hhcc--CC-----C---hhHhhhhhhheecc--ceEEEeeccccchhhh
Confidence 1222222222 22233455665543 3221 10 1 14456677777774 2335567999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
.|++.|++.-++|+|||-|-.||..++.++++.+++-.++. +.||+..+|- .+-+..+..+++.++.|+++..-
T Consensus 157 QicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~R-----gatIVYATHI-FDGLe~Wpthl~yi~~Gkl~~~l 230 (291)
T KOG2355|consen 157 QICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQR-----GATIVYATHI-FDGLETWPTHLVYIKSGKLVDNL 230 (291)
T ss_pred HHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhc-----CcEEEEEeee-ccchhhcchhEEEecCCeeeecc
Confidence 99999999999999999999999999999999999988753 4799999996 45788999999999999999876
Q ss_pred CccchHH
Q psy10236 264 KRRDMLP 270 (515)
Q Consensus 264 ~~~~~~~ 270 (515)
+..++.+
T Consensus 231 ~~~~i~e 237 (291)
T KOG2355|consen 231 KYQKIKE 237 (291)
T ss_pred ccchhhh
Confidence 6665543
No 394
>KOG0062|consensus
Probab=99.88 E-value=2.1e-23 Score=215.90 Aligned_cols=202 Identities=17% Similarity=0.252 Sum_probs=144.1
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYV 117 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv 117 (515)
..|...+.+..| +++.+|++-++++..|.-+||+|+||+|||||||+|+. |+|.....+ +..+ --++
T Consensus 79 ~Di~~~~fdLa~--G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve---qE~~--g~~t 145 (582)
T KOG0062|consen 79 KDIHIDNFDLAY--GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE---QEVR--GDDT 145 (582)
T ss_pred cceeeeeeeeee--cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch---hhee--ccch
Confidence 468888888776 78899999999999999999999999999999999997 333322211 1111 1111
Q ss_pred ec-CCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHHHHHhCCCE
Q psy10236 118 RS-QSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLMSHADI 195 (515)
Q Consensus 118 ~q-~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~aL~~~p~l 195 (515)
+- ++.+..+..+.+-+.--..+.. .....+..+++|..+|.+ +...+++++||||-|-|+++||||..+|+|
T Consensus 146 ~~~~~~l~~D~~~~dfl~~e~~l~~------~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDl 219 (582)
T KOG0062|consen 146 EALQSVLESDTERLDFLAEEKELLA------GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDL 219 (582)
T ss_pred HHHhhhhhccHHHHHHHHhhhhhhc------cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCE
Confidence 11 1223333333333322111110 112233344588999996 556788899999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEE-EecCccch
Q psy10236 196 LLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTM-YSGKRRDM 268 (515)
Q Consensus 196 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv-~~G~~~~~ 268 (515)
|||||||+.||..+...+.+.|+.+. .|+|+++|+ +..+-..|..|+-+++-|+- |.|+.++.
T Consensus 220 LLLDEPTNhLDv~av~WLe~yL~t~~---------~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 220 LLLDEPTNHLDVVAVAWLENYLQTWK---------ITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred EeecCCcccchhHHHHHHHHHHhhCC---------ceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 99999999999999999999999873 588888887 55678888888888776553 34554443
No 395
>KOG0066|consensus
Probab=99.88 E-value=1.3e-22 Score=205.54 Aligned_cols=177 Identities=19% Similarity=0.235 Sum_probs=143.4
Q ss_pred CcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceE
Q psy10236 36 FFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLV 115 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~ 115 (515)
.-|.|-++|++|.|+ +.++++.+++|-|.-...+||+||||.||||||++|.|.+.|..|+.+-| .+-+||
T Consensus 583 ~PPvLGlH~VtFgy~-gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn--------hrL~iG 653 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP-GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN--------HRLRIG 653 (807)
T ss_pred CCCeeecccccccCC-CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc--------ceeeee
Confidence 346899999999985 67889999999999999999999999999999999999999999986532 345688
Q ss_pred EEecCC--CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccC-cccCCChHHHHHHHHHHHHHhC
Q psy10236 116 YVRSQS--FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLST-RVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 116 yv~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-~v~~LSGGerqRv~IA~aL~~~ 192 (515)
+..|+. .+-..-|..|+|.-... .+ -+.+...|-.+||...+++ ++..|||||+-||++|..-+..
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FN--lp---------yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFN--LP---------YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcC--CC---------hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCC
Confidence 887754 34445566666543211 11 1345567899999877666 4788999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCc
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPT 241 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~ 241 (515)
|++|||||||++||..+...+.+.|+++. ..||+++|+..
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIney~---------GgVi~VsHDeR 762 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINEYN---------GGVIMVSHDER 762 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHhcc---------CcEEEEecccc
Confidence 99999999999999999999999999873 35677777643
No 396
>KOG0062|consensus
Probab=99.87 E-value=6.1e-22 Score=205.17 Aligned_cols=204 Identities=16% Similarity=0.203 Sum_probs=165.8
Q ss_pred CCCCCcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhc
Q psy10236 32 GRPEFFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALK 111 (515)
Q Consensus 32 ~~~~~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~ 111 (515)
+.+...|.+++.++++.|..+.-.++.++++.++.-+-.+++|+||+||||++|++.|-..|..|.+.+++ |
T Consensus 355 ~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~--------r 426 (582)
T KOG0062|consen 355 GEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP--------R 426 (582)
T ss_pred CCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc--------c
Confidence 45566789999999998854333789999999999999999999999999999999999999999887755 5
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHHHHH
Q psy10236 112 RRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLM 190 (515)
Q Consensus 112 ~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~aL~ 190 (515)
.+++|-.|...-+-+++|.+- .+..+.+... .++.+++-+..+||+ +.+...+.+||||||-||++|....
T Consensus 427 ~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~pG~-------~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 427 LRIKYFAQHHVDFLDKNVNAV-DFMEKSFPGK-------TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTW 498 (582)
T ss_pred ceecchhHhhhhHHHHHhHHH-HHHHHhCCCC-------CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhc
Confidence 678998887554444444432 2333333211 345677889999996 6677778999999999999999999
Q ss_pred hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEE
Q psy10236 191 SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMY 261 (515)
Q Consensus 191 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~ 261 (515)
.+|.+|+|||||+.||-.+-..+.+.|+.+. .-||+++|+ ..-+...|+.+.+.++|++.-
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~---------GGVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNFN---------GGVVLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhcC---------CcEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999873 246777776 456888999999999999875
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.86 E-value=9.7e-22 Score=188.36 Aligned_cols=146 Identities=17% Similarity=0.122 Sum_probs=111.5
Q ss_pred eeeeEEEEecCe-EEEEEcCCCchHHHHHHHHh--------CCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCC
Q psy10236 57 VQGVSFEVKGSE-VLAIMSTSALEGKAILDALA--------GRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPEL 127 (515)
Q Consensus 57 L~~vs~~v~~Ge-i~aIiG~nGaGKSTLl~~L~--------G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~l 127 (515)
.-++|+++.+|+ +++|.||||+||||||++|+ |..-|.... ..++|..|.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~--------------~~~~~~~~~------- 75 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG--------------SSLPVFENI------- 75 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc--------------ccCcCccEE-------
Confidence 568999999995 89999999999999999998 433222100 012222221
Q ss_pred CHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCh
Q psy10236 128 NVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207 (515)
Q Consensus 128 Tv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~ 207 (515)
+..++..+..+...+++|+||||++.|++++ .+|+++++|||++|||+
T Consensus 76 -------------------------------~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~ 123 (200)
T cd03280 76 -------------------------------FADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDP 123 (200)
T ss_pred -------------------------------EEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCH
Confidence 1122223334556678999999999999884 89999999999999999
Q ss_pred hhHHHHH-HHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 208 FDTFFLV-EFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 208 ~~~~~i~-~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
..+..+. ..++.+.+.+ .++|+++|+ .++.++||++.+|.+|++++.+
T Consensus 124 ~~~~~i~~~~l~~l~~~~------~~vi~~tH~--~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 124 VEGAALAIAILEELLERG------ALVIATTHY--GELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHhcC------CEEEEECCH--HHHHHHHhcCCCeEEEEEEEec
Confidence 9999996 5788887655 789999996 3688999999999999998874
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=6.2e-21 Score=184.46 Aligned_cols=86 Identities=15% Similarity=0.055 Sum_probs=70.5
Q ss_pred cccCcccCCChHHHHHHHHHHHH----HhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCc
Q psy10236 167 VLSTRVGRLTTSELKRLSIACCL----MSHADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPT 241 (515)
Q Consensus 167 ~~~~~v~~LSGGerqRv~IA~aL----~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~ 241 (515)
..+..+++||||||||+.+|++| +.+|+++++||||+|||+.++..+.+.|++++++ | +.++|+++|+..
T Consensus 119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g-----~~~viiith~~~ 193 (213)
T cd03277 119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEG-----TSQYFLITPKLL 193 (213)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCC-----CceEEEEchhhc
Confidence 45667889999999999877654 4799999999999999999999999999999765 4 246777777743
Q ss_pred hHHHhhcc--EEEEEeCCe
Q psy10236 242 YEIFTMIS--RVLLVSGGR 258 (515)
Q Consensus 242 ~~i~~~~D--rv~vL~~G~ 258 (515)
+..+.|| +|++|++|+
T Consensus 194 -~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 194 -PGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred -cCCcccCceEEEEEecCc
Confidence 4566666 788888887
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.85 E-value=1e-21 Score=200.68 Aligned_cols=171 Identities=25% Similarity=0.321 Sum_probs=126.5
Q ss_pred EecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhc----------------c--ceEEEecCCCCCC
Q psy10236 64 VKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALK----------------R--RLVYVRSQSFLSP 125 (515)
Q Consensus 64 v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~----------------~--~i~yv~q~~~~~~ 125 (515)
.++|.++||+|+||-||||-+|+|+|.+.|.=|+- ++.+-...-++ . ++..=+|--.+.|
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 57999999999999999999999999999976642 23211000011 0 1111122111111
Q ss_pred C---CCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCC
Q psy10236 126 E---LNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPT 202 (515)
Q Consensus 126 ~---lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPt 202 (515)
. =+|.|-|.- ...+...+++++.++|.+..|+.+.+|||||.||++||.+++++++++++||||
T Consensus 175 k~~KG~v~elLk~-------------~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEps 241 (591)
T COG1245 175 KVVKGKVGELLKK-------------VDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPS 241 (591)
T ss_pred HHhcchHHHHHHh-------------hhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCc
Confidence 1 133333321 111235778999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC
Q psy10236 203 VFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG 256 (515)
Q Consensus 203 sgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~ 256 (515)
|-||...+....+.++++++.+ ++||++-|+. .-+--++|-|.++.+
T Consensus 242 SyLDi~qRl~~ar~Irel~~~~------k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 242 SYLDIRQRLNAARVIRELAEDG------KYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred ccccHHHHHHHHHHHHHHhccC------CeEEEEechH-HHHHHhhheeEEEec
Confidence 9999999999999999999865 8999999974 345557898888864
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.81 E-value=2.4e-19 Score=168.60 Aligned_cols=74 Identities=15% Similarity=0.124 Sum_probs=67.0
Q ss_pred CChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccE
Q psy10236 175 LTTSELKRLSIACCLM----SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISR 250 (515)
Q Consensus 175 LSGGerqRv~IA~aL~----~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Dr 250 (515)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++| .++|+++|++ +....+|+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g------~tiIiiSH~~--~~~~~adr 166 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHT------SQFIVITLKK--EMFENADK 166 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC------CEEEEEECCH--HHHhhCCe
Confidence 9999999999999996 6999999999999999999999999999997655 7899999975 45678999
Q ss_pred EEEEeC
Q psy10236 251 VLLVSG 256 (515)
Q Consensus 251 v~vL~~ 256 (515)
++.+..
T Consensus 167 vi~i~~ 172 (178)
T cd03239 167 LIGVLF 172 (178)
T ss_pred EEEEEE
Confidence 999965
No 401
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=9.3e-19 Score=175.98 Aligned_cols=76 Identities=17% Similarity=0.097 Sum_probs=67.2
Q ss_pred CCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhcc
Q psy10236 174 RLTTSELKRLSIACCLMS----HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMIS 249 (515)
Q Consensus 174 ~LSGGerqRv~IA~aL~~----~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~D 249 (515)
+|||||+||+++|++++. +|+++++||||++||+..+..+.+.|+++.+ + .++|+++|++. +...||
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~------~tii~isH~~~--~~~~~d 240 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-S------HQVLCITHLPQ--VAAMAD 240 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-C------CEEEEEechHH--HHHhcC
Confidence 399999999999997664 9999999999999999999999999999864 3 68999999863 668999
Q ss_pred EEEEEeCCe
Q psy10236 250 RVLLVSGGR 258 (515)
Q Consensus 250 rv~vL~~G~ 258 (515)
++++|.+|.
T Consensus 241 ~~~~l~~~~ 249 (276)
T cd03241 241 NHFLVEKEV 249 (276)
T ss_pred cEEEEEEec
Confidence 999998764
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.79 E-value=2.3e-19 Score=171.73 Aligned_cols=147 Identities=10% Similarity=0.010 Sum_probs=106.3
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHH
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTL 133 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l 133 (515)
+.+++|+++.. |++++|+||||||||||+|+|+|... +...|.+++.. .++.|.+.+++.+|+.|++
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~------~~~~q~~~l~~~~~~~d~l 80 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS------SFELPPVKIFTSIRVSDDL 80 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC------ccCcccceEEEeccchhcc
Confidence 45788887775 79999999999999999999988543 22355554321 2556677889999999999
Q ss_pred HHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHH
Q psy10236 134 TFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFL 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i 213 (515)
.+.... ... ..+++.++++.+++ .+|+++++|||++|+|+..+..+
T Consensus 81 ~~~~s~-------~~~-e~~~~~~iL~~~~~--------------------------~~p~llllDEp~~glD~~~~~~l 126 (199)
T cd03283 81 RDGISY-------FYA-ELRRLKEIVEKAKK--------------------------GEPVLFLLDEIFKGTNSRERQAA 126 (199)
T ss_pred ccccCh-------HHH-HHHHHHHHHHhccC--------------------------CCCeEEEEecccCCCCHHHHHHH
Confidence 764311 112 22567778887763 79999999999999999998877
Q ss_pred H-HHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhh--ccEEEEE
Q psy10236 214 V-EFLRGWASGGPAGMAGKMVILTLQPPTYEIFTM--ISRVLLV 254 (515)
Q Consensus 214 ~-~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~--~Drv~vL 254 (515)
. .+++.+.+.+ .++|+++|++. .+... .++|-.+
T Consensus 127 ~~~ll~~l~~~~------~tiiivTH~~~-~~~~~~~~~~v~~~ 163 (199)
T cd03283 127 SAAVLKFLKNKN------TIGIISTHDLE-LADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHCC------CEEEEEcCcHH-HHHhhhcCCCeEEE
Confidence 5 4788887655 78888888853 34333 4455444
No 403
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.79 E-value=2.6e-19 Score=174.17 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=115.3
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceE-EEecCCCCCCCCCHHH
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLV-YVRSQSFLSPELNVAQ 131 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~-yv~q~~~~~~~lTv~e 131 (515)
.+.+.+|++++..+|++++|.||||+|||||+++++- ..+-..+| |||.+....+
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~------------------~~~la~~g~~vpa~~~~~~------ 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV------------------IVLMAQIGCFVPCDSADIP------ 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH------------------HHHHHHhCCCcCcccEEEe------
Confidence 4568999999999999999999999999999999981 01122233 4433221110
Q ss_pred HHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHH--HhCCCEEEEeCC---CCCCC
Q psy10236 132 TLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCL--MSHADILLLDCP---TVFMD 206 (515)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL--~~~p~lLlLDEP---tsgLD 206 (515)
.+++++..+|+.+. ....+|.|+++++.+++++ +.+|+++||||| |++||
T Consensus 72 ----------------------~~~~il~~~~l~d~---~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD 126 (222)
T cd03285 72 ----------------------IVDCILARVGASDS---QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD 126 (222)
T ss_pred ----------------------ccceeEeeeccccc---hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence 12335566666543 3567999999999999999 899999999999 89999
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCc
Q psy10236 207 IFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKR 265 (515)
Q Consensus 207 ~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~ 265 (515)
+.+... ..++.+.++. +.++++++|. .++.++||++..+.+|++...+..
T Consensus 127 ~~~~~~--~il~~l~~~~-----~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~~ 176 (222)
T cd03285 127 GFGLAW--AIAEYIATQI-----KCFCLFATHF--HELTALADEVPNVKNLHVTALTDD 176 (222)
T ss_pred HHHHHH--HHHHHHHhcC-----CCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEeC
Confidence 988753 3334454321 2788999995 578999999999999999887653
No 404
>KOG0064|consensus
Probab=99.79 E-value=2.1e-19 Score=186.34 Aligned_cols=185 Identities=14% Similarity=0.204 Sum_probs=139.2
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEe
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVR 118 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~ 118 (515)
.+.++|+-+-.+ .+..++..++|+|++|--+.|+||||||||+|.++|+|+.|...|.... ....++-|+|
T Consensus 481 gI~lenIpvItP-~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~--------P~~~~mFYIP 551 (728)
T KOG0064|consen 481 GIILENIPVITP-AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI--------PRPNNIFYIP 551 (728)
T ss_pred ceEEecCceecc-CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec--------CCCcceEecc
Confidence 488888876543 4556899999999999999999999999999999999999986665432 1234599999
Q ss_pred cCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCccc---------CCChHHHHHHHHHHHH
Q psy10236 119 SQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVG---------RLTTSELKRLSIACCL 189 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~---------~LSGGerqRv~IA~aL 189 (515)
|.+... .-|.+|.+-++........ +.-.++....+|+.+.|++...+-.| -||||||||+.+||.+
T Consensus 552 QRPYms-~gtlRDQIIYPdS~e~~~~---kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~ 627 (728)
T KOG0064|consen 552 QRPYMS-GGTLRDQIIYPDSSEQMKR---KGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMF 627 (728)
T ss_pred CCCccC-cCcccceeecCCcHHHHHh---cCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHH
Confidence 998765 4467776655321100000 01123456677788887776655543 3999999999999999
Q ss_pred HhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhh
Q psy10236 190 MSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTM 247 (515)
Q Consensus 190 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~ 247 (515)
.++|+.-+|||-||+..+.....+.+..++. |.+.+-++|.|. +..+
T Consensus 628 yHrPkyalLDEcTsAvsidvE~~i~~~ak~~---------gi~llsithrps--lwk~ 674 (728)
T KOG0064|consen 628 YHRPKYALLDECTSAVSIDVEGKIFQAAKDA---------GISLLSITHRPS--LWKY 674 (728)
T ss_pred hcCcchhhhhhhhcccccchHHHHHHHHHhc---------CceEEEeecCcc--HHHH
Confidence 9999999999999999999888888887753 377888888885 4554
No 405
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.78 E-value=3.1e-18 Score=185.77 Aligned_cols=127 Identities=20% Similarity=0.320 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHHHHHhCC---CEEEEeCC
Q psy10236 126 ELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLMSHA---DILLLDCP 201 (515)
Q Consensus 126 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~aL~~~p---~lLlLDEP 201 (515)
+|||.|...|+... ..-.+..+.|..+||. -.+-++..+|||||.|||-+|.+|.... .+++||||
T Consensus 783 ~MTveEA~~FF~~~----------p~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEP 852 (935)
T COG0178 783 DMTVEEALEFFEAI----------PKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEP 852 (935)
T ss_pred hccHHHHHHHHhcc----------hHHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCC
Confidence 46777777665431 1123345667888996 4467788889999999999999999877 99999999
Q ss_pred CCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE------eCCeEEEecCccchHH
Q psy10236 202 TVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV------SGGRTMYSGKRRDMLP 270 (515)
Q Consensus 202 tsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL------~~G~iv~~G~~~~~~~ 270 (515)
|+||-.....++++.|.+|.++| .|||++-|.. ++.+.||.|+=| ..|+||+.|+|+++..
T Consensus 853 TTGLH~~Di~kLl~VL~rLvd~G------nTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 853 TTGLHFDDIKKLLEVLHRLVDKG------NTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC------CEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999999999999999999987 8999998864 689999999998 3689999999999863
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.78 E-value=1.9e-18 Score=175.03 Aligned_cols=181 Identities=15% Similarity=0.233 Sum_probs=137.5
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC--------CCCeeEEEECCeeCChhhhccceEEEecCC-CCC
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN--------DAKAFQVILNGHSIPLNALKRRLVYVRSQS-FLS 124 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~--------~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~-~~~ 124 (515)
..+|+|+|++++|||+++|+|+|||||||+|++|+|.. +|++|.|.+--.. ..+.+|.+. .-+
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~f 467 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEPEF 467 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCccccccc
Confidence 45799999999999999999999999999999999964 5788888663221 123333321 222
Q ss_pred CCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc--cccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCC
Q psy10236 125 PELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ--VLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPT 202 (515)
Q Consensus 125 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPt 202 (515)
...|+.|.+.- .. -.-..+.+++++.||.+ ...++.++||-|||.|+.||.++...|.+++.||-.
T Consensus 468 ~~~tilehl~s------~t------GD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~ 535 (593)
T COG2401 468 GEVTILEHLRS------KT------GDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFA 535 (593)
T ss_pred CchhHHHHHhh------cc------CchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhh
Confidence 34455555431 11 01123567899999964 456778899999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhh-ccEEEEEeCCeEE
Q psy10236 203 VFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTM-ISRVLLVSGGRTM 260 (515)
Q Consensus 203 sgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~-~Drv~vL~~G~iv 260 (515)
+.||..++..+..-|.+++++- +.|.++++|+|. -.-++ -|+++.+.-|.+.
T Consensus 536 AhLD~~TA~rVArkiselaRe~-----giTlivvThrpE-v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 536 AHLDELTAVRVARKISELAREA-----GITLIVVTHRPE-VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhcCHHHHHHHHHHHHHHHHHh-----CCeEEEEecCHH-HHhccCCceeEEeeccccc
Confidence 9999999999999999998753 378888888863 34444 5888888666543
No 407
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.77 E-value=4.7e-18 Score=201.71 Aligned_cols=195 Identities=19% Similarity=0.212 Sum_probs=144.8
Q ss_pred eeeeEEEEecCeEEEEEcCCCchHHHHHHHHh----------CCCCCCeeEEEECCeeCCh-------------hhhcc-
Q psy10236 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALA----------GRNDAKAFQVILNGHSIPL-------------NALKR- 112 (515)
Q Consensus 57 L~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~----------G~~~~~~G~I~~~G~~~~~-------------~~~~~- 112 (515)
|+||+.+|+-|.+++|.|.||||||||++-.. |. ..-+--|.++-.|+.. ..+|+
T Consensus 1506 Lk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~-~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1506 IQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGP-SVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred CCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccc-cccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 99999999999999999999999999997443 22 1122346666655511 00110
Q ss_pred ------------------------------ceEEEecCCCC--------------------------------CCCCCHH
Q psy10236 113 ------------------------------RLVYVRSQSFL--------------------------------SPELNVA 130 (515)
Q Consensus 113 ------------------------------~i~yv~q~~~~--------------------------------~~~lTv~ 130 (515)
.-|++.-+-.+ .-+|||.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 01121111111 1246666
Q ss_pred HHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHHHHHhC---CCEEEEeCCCCCCC
Q psy10236 131 QTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLMSH---ADILLLDCPTVFMD 206 (515)
Q Consensus 131 e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~aL~~~---p~lLlLDEPtsgLD 206 (515)
|.+.|+.. ...-.+.-+.|..+||. -.+.++..+|||||.||+-||..|..+ +.+++|||||+||+
T Consensus 1665 ea~~~F~~----------~~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh 1734 (1809)
T PRK00635 1665 EVAETFPF----------LKKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLD 1734 (1809)
T ss_pred HHHHHhhc----------cHHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCC
Confidence 66666532 11223456788999996 346888889999999999999999876 78999999999999
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe------CCeEEEecCccchHH
Q psy10236 207 IFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS------GGRTMYSGKRRDMLP 270 (515)
Q Consensus 207 ~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~------~G~iv~~G~~~~~~~ 270 (515)
+.....+++.|++|.+.| .|||++.|++ ++.+.||.|+-|- .|+||+.|+|+++..
T Consensus 1735 ~~d~~~Ll~~l~~L~~~g------~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1735 NQQKSALLVQLRTLVSLG------HSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred HHHHHHHHHHHHHHHhcC------CeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999887 8999999975 5778899999983 689999999999863
No 408
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.77 E-value=1.6e-18 Score=160.50 Aligned_cols=139 Identities=16% Similarity=0.086 Sum_probs=98.7
Q ss_pred eeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceE-EEecCCCCCCCCCHHHHHHHH
Q psy10236 58 QGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLV-YVRSQSFLSPELNVAQTLTFY 136 (515)
Q Consensus 58 ~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~-yv~q~~~~~~~lTv~e~l~~~ 136 (515)
...+..+.++.++.|+|||||||||+++++....-...|.+.... .. +.+ +++.....+
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~-------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV-------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc-------cCCCcceeeEEEE------------
Confidence 444555556679999999999999999998766544333322210 00 001 011110000
Q ss_pred hhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCChhhHHH
Q psy10236 137 SHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMS----HADILLLDCPTVFMDIFDTFF 212 (515)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~----~p~lLlLDEPtsgLD~~~~~~ 212 (515)
. ....+||+||+||+++|++|.. +|+++|+|||++|+|+.....
T Consensus 72 --i------------------------------~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 72 --I------------------------------FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred --e------------------------------hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 0 0001299999999999999997 789999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC
Q psy10236 213 LVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG 256 (515)
Q Consensus 213 i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~ 256 (515)
+.+.+.++.+++ .++|+++|++ ++.+.+|+++.|..
T Consensus 120 l~~~l~~~~~~~------~~vii~TH~~--~~~~~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLVKG------AQVIVITHLP--ELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHhcC------CEEEEEcCCH--HHHHhhhhEEEEEE
Confidence 999999886544 7889999975 56678999999854
No 409
>KOG0066|consensus
Probab=99.75 E-value=6.1e-19 Score=179.11 Aligned_cols=208 Identities=16% Similarity=0.300 Sum_probs=151.3
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC--CCCeeEEEECCeeCCh---------
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN--DAKAFQVILNGHSIPL--------- 107 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~--~~~~G~I~~~G~~~~~--------- 107 (515)
.|.++|.+.+. .++.++.|.|+.|-.|..++++||||-||||||+.|+.+- -|..=.|++..+.+-.
T Consensus 264 DIKiEnF~ISA--~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tv 341 (807)
T KOG0066|consen 264 DIKIENFDISA--QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTV 341 (807)
T ss_pred cceeeeeeeec--ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHH
Confidence 58888887764 5678899999999999999999999999999999999864 2333344444443310
Q ss_pred -hhhccceEEEec-----CCCCCCCCCHHHHHHH-HhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-cccCcccCCChHH
Q psy10236 108 -NALKRRLVYVRS-----QSFLSPELNVAQTLTF-YSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-VLSTRVGRLTTSE 179 (515)
Q Consensus 108 -~~~~~~i~yv~q-----~~~~~~~lTv~e~l~~-~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSGGe 179 (515)
..-.++...+.. ...--...|+.|-+.- +..++... ......++..+|.-+|.+. ..+++....|||-
T Consensus 342 l~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiG----A~sAEarARRILAGLGFskEMQ~rPt~kFSGGW 417 (807)
T KOG0066|consen 342 LKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIG----ADSAEARARRILAGLGFSKEMQERPTTKFSGGW 417 (807)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhc----cccchhHHHHHHhhcCCChhHhcCCccccCCce
Confidence 000111211111 0111234577776643 33344221 1234467788999999974 4566677799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 180 LKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 180 rqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
|.||++||||..+|-+|.|||||+.||..+...+-..|+.|. +|.+|++|+. ..+-..|..|+-|.+-++
T Consensus 418 RMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---------KTLLIVSHDQ-gFLD~VCtdIIHLD~qkL 487 (807)
T KOG0066|consen 418 RMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---------KTLLIVSHDQ-GFLDSVCTDIIHLDNQKL 487 (807)
T ss_pred eeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---------heeEEEeccc-chHHHHHHHHhhhhhhhh
Confidence 999999999999999999999999999999999999999996 5777777764 468889999999988877
Q ss_pred EEe
Q psy10236 260 MYS 262 (515)
Q Consensus 260 v~~ 262 (515)
-|+
T Consensus 488 hyY 490 (807)
T KOG0066|consen 488 HYY 490 (807)
T ss_pred hhh
Confidence 654
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.75 E-value=6.5e-18 Score=192.78 Aligned_cols=137 Identities=23% Similarity=0.382 Sum_probs=110.9
Q ss_pred CCCCCHHHHHHHHhhcCCCCCCC-----chhhHHHHHHHHHHHcCCccc-ccCcccCCChHHHHHHHHHHHHHhCC--CE
Q psy10236 124 SPELNVAQTLTFYSHLRRPPKHS-----IKVTTSEQMGLLIEELGLTQV-LSTRVGRLTTSELKRLSIACCLMSHA--DI 195 (515)
Q Consensus 124 ~~~lTv~e~l~~~~~~~~~~~~~-----~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSGGerqRv~IA~aL~~~p--~l 195 (515)
+-.++|.|.+.|...+....... ...+..++++ .|+.+||... .++++.+|||||+|||.||++|+.+| ++
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~l 512 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 512 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcE
Confidence 45689999998865442211000 0012234443 6888999876 79999999999999999999999997 99
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE------eCCeEEEecCccchH
Q psy10236 196 LLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV------SGGRTMYSGKRRDML 269 (515)
Q Consensus 196 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL------~~G~iv~~G~~~~~~ 269 (515)
+||||||+|||+..+..+.++|++++++| .|||+++|++. ++ ..||+|++| ++|++++.|+++++.
T Consensus 513 lILDEPtagLd~~~~~~L~~~L~~L~~~G------~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 513 YVLDEPSIGLHQRDNDRLIETLKHLRDLG------NTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHHhCC------CEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 99999999999999999999999998766 89999999854 45 469999999 999999999988764
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=1.2e-17 Score=190.26 Aligned_cols=137 Identities=23% Similarity=0.350 Sum_probs=108.9
Q ss_pred CCCCCHHHHHHHHhhcCCCCCCCc-----hhhHHHHHHHHHHHcCCccc-ccCcccCCChHHHHHHHHHHHHHhCC--CE
Q psy10236 124 SPELNVAQTLTFYSHLRRPPKHSI-----KVTTSEQMGLLIEELGLTQV-LSTRVGRLTTSELKRLSIACCLMSHA--DI 195 (515)
Q Consensus 124 ~~~lTv~e~l~~~~~~~~~~~~~~-----~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSGGerqRv~IA~aL~~~p--~l 195 (515)
.-.|||.|.+.|...+........ -.+..+++ +.+..+||... .++.+.+|||||+|||.||++|+.+| ++
T Consensus 432 ~~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~l 510 (924)
T TIGR00630 432 VSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVL 510 (924)
T ss_pred HhcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcE
Confidence 346899999888766532210000 00111222 34778899765 79999999999999999999999986 89
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE------eCCeEEEecCccchH
Q psy10236 196 LLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV------SGGRTMYSGKRRDML 269 (515)
Q Consensus 196 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL------~~G~iv~~G~~~~~~ 269 (515)
+||||||+|||+.++..+.+.|++++++| .|||+++|++ +.+ ..||++++| ++|++++.|+++++.
T Consensus 511 lILDEPtagLD~~~~~~L~~~L~~L~~~G------~TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 511 YVLDEPSIGLHQRDNERLINTLKRLRDLG------NTVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHhCC------CEEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 99999999999999999999999998776 8999999985 344 589999999 899999999988764
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.73 E-value=3.8e-18 Score=163.70 Aligned_cols=156 Identities=12% Similarity=0.032 Sum_probs=104.4
Q ss_pred eeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC-CCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHh
Q psy10236 59 GVSFEVKGSEVLAIMSTSALEGKAILDALAGRN-DAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYS 137 (515)
Q Consensus 59 ~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~-~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~ 137 (515)
..++++.+|++++|+|||||||||||++|++.. .+..|.. ... .+..+++..|. +
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~------~~~--~~~~i~~~dqi---~------------- 76 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCF------VPA--ESASIPLVDRI---F------------- 76 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCC------ccc--cccccCCcCEE---E-------------
Confidence 345556689999999999999999999999532 1112210 000 01122222111 1
Q ss_pred hcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHH-H
Q psy10236 138 HLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVE-F 216 (515)
Q Consensus 138 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~-~ 216 (515)
..++..+......+.++++++| +..+.+++.+|+++|+||||+|+|+.....+.. +
T Consensus 77 ----------------------~~~~~~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~l 133 (202)
T cd03243 77 ----------------------TRIGAEDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAV 133 (202)
T ss_pred ----------------------EEecCcccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHH
Confidence 1111112223334456666554 777788889999999999999999998888765 5
Q ss_pred HHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 217 LRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 217 L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
++.+.+.+ .++|+++|++ ++.+.++++..+..|++...++..++.
T Consensus 134 l~~l~~~~------~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~ 178 (202)
T cd03243 134 LEHLLEKG------CRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGGLT 178 (202)
T ss_pred HHHHHhcC------CeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCeee
Confidence 66666554 7888898863 678889999999999999888765443
No 413
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.70 E-value=4.5e-17 Score=156.41 Aligned_cols=141 Identities=11% Similarity=0.097 Sum_probs=101.7
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceE-EEecCCCCCCCCCHHH
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLV-YVRSQSFLSPELNVAQ 131 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~-yv~q~~~~~~~lTv~e 131 (515)
+..+.+|+++++++|++++|+||||+||||++++|++.. +..++| +| +...+.+++.|
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~------------------~la~~G~~v---pa~~~~l~~~d 73 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA------------------IMAQIGCFV---PAEYATLPIFN 73 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH------------------HHHHcCCCc---chhhcCccChh
Confidence 456899999999999999999999999999999998863 111222 22 22334445555
Q ss_pred HHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHH
Q psy10236 132 TLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTF 211 (515)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~ 211 (515)
++. ..++..+..++..+++|+|++|+ ..+.+++.+|+++++|||++|+|+....
T Consensus 74 ~I~-------------------------~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~ 127 (204)
T cd03282 74 RLL-------------------------SRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGF 127 (204)
T ss_pred hee-------------------------EecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHH
Confidence 542 23333344556667899999975 5666788999999999999999997765
Q ss_pred HH-HHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhc
Q psy10236 212 FL-VEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMI 248 (515)
Q Consensus 212 ~i-~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~ 248 (515)
.+ .+.++.+.+.+ .++|+++|.. ++.+.+
T Consensus 128 ~l~~~il~~l~~~~------~~~i~~TH~~--~l~~~~ 157 (204)
T cd03282 128 AISLAILECLIKKE------STVFFATHFR--DIAAIL 157 (204)
T ss_pred HHHHHHHHHHHhcC------CEEEEECChH--HHHHHh
Confidence 55 45677777655 7899999964 444443
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=4.6e-16 Score=155.97 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=62.0
Q ss_pred cCCChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchH
Q psy10236 173 GRLTTSELKRLSIACCLM---------SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYE 243 (515)
Q Consensus 173 ~~LSGGerqRv~IA~aL~---------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~ 243 (515)
..+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+++.++|. .+
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---------q~ii~~~~~--~~ 250 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---------QTFVTTTDL--AD 250 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---------CEEEEeCCc--hh
Confidence 348999999999999985 6999999999999999999999999998642 344444443 35
Q ss_pred HHhhc---cEEEEEeCCeE
Q psy10236 244 IFTMI---SRVLLVSGGRT 259 (515)
Q Consensus 244 i~~~~---Drv~vL~~G~i 259 (515)
+..+| ++++.+++|++
T Consensus 251 ~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 251 FDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred ccchhccCccEEEEeCcEE
Confidence 66777 78999999985
No 415
>KOG0063|consensus
Probab=99.64 E-value=1.4e-15 Score=154.81 Aligned_cols=177 Identities=18% Similarity=0.263 Sum_probs=134.9
Q ss_pred cceeeeeEEEEecC-----eEEEEEcCCCchHHHHHHHHhCCCCCCee-EEEECCeeCChhhhccceEEEecCCCCCCCC
Q psy10236 54 KCFVQGVSFEVKGS-----EVLAIMSTSALEGKAILDALAGRNDAKAF-QVILNGHSIPLNALKRRLVYVRSQSFLSPEL 127 (515)
Q Consensus 54 ~~iL~~vs~~v~~G-----ei~aIiG~nGaGKSTLl~~L~G~~~~~~G-~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~l 127 (515)
+.-+.+..+.|+.| |++..+|.||.|||||+++++|+++|++| +|- .-.++|=+|...--..-
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p-----------~lnVSykpqkispK~~~ 417 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIP-----------VLNVSYKPQKISPKREG 417 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCccc-----------ccceeccccccCccccc
Confidence 34577888888877 57899999999999999999999999875 322 22466666654444455
Q ss_pred CHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCh
Q psy10236 128 NVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207 (515)
Q Consensus 128 Tv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~ 207 (515)
||++.+.-- .+.. -...+-+.++++-+.+++..|+.+.+|||||+|||++|.+|-..+++++.|||.+-||+
T Consensus 418 tvR~ll~~k--Ir~a------y~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDS 489 (592)
T KOG0063|consen 418 TVRQLLHTK--IRDA------YMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDS 489 (592)
T ss_pred hHHHHHHHH--hHhh------hcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcCh
Confidence 888766432 1110 11234567788999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe
Q psy10236 208 FDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS 255 (515)
Q Consensus 208 ~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~ 255 (515)
..+..--..+++.--.. ++|-.++-|+-. -..-++|||++..
T Consensus 490 eQRi~AskvikRfilha-----kktafvVEhdfI-maTYladrvivf~ 531 (592)
T KOG0063|consen 490 EQRIIASKVIKRFILHA-----KKTAFVVEHDFI-MATYLADRVIVFE 531 (592)
T ss_pred HHHHHHHHHHHHHHHhc-----cchhhhhhhHHH-HHHhhcceeEEEe
Confidence 99999999999865332 267777777632 2344688887763
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.63 E-value=1.4e-15 Score=151.59 Aligned_cols=140 Identities=16% Similarity=0.118 Sum_probs=98.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC----hhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCC
Q psy10236 68 EVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP----LNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPP 143 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~----~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~ 143 (515)
.-++|+||||||||||+++|+|.++|.+|+|.++|+++. ..++...+++++|.+ +.+.++|.++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~--------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP--------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch---------
Confidence 578999999999999999999999999999999999884 234555677787754 334555544311
Q ss_pred CCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC
Q psy10236 144 KHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASG 223 (515)
Q Consensus 144 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~ 223 (515)
+ . + | .....+..+|+++++|||++ ...+..+++.+. +
T Consensus 182 ----k--~-~------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~~~~~-~ 218 (270)
T TIGR02858 182 ----K--A-E------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALLEALH-A 218 (270)
T ss_pred ----H--H-H------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh-C
Confidence 0 0 0 1 12223336999999999973 344555555553 4
Q ss_pred CCCCCCCcEEEEEeCCCchH-H-----------HhhccEEEEEeCCeEEEecCccch
Q psy10236 224 GPAGMAGKMVILTLQPPTYE-I-----------FTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 224 g~~~~~~~tiiis~h~~~~~-i-----------~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
| .++|+++|.+..+ + ..+|||+++|++|+ ..|.++++
T Consensus 219 G------~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 219 G------VSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred C------CEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 4 8999999975332 2 26799999999887 67777654
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.62 E-value=8.4e-16 Score=149.00 Aligned_cols=161 Identities=12% Similarity=0.056 Sum_probs=107.4
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHH
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQT 132 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~ 132 (515)
++.+.+|++++.++ ++++|.||||+|||||||.|++..-. |+ .|..+.. .+..++++.| +++.+++.|+
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~vp~--~~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFVPA--SKAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCeecc--ccceecceee---EeccCCchhh
Confidence 34589999999987 99999999999999999999874321 10 1222221 2345666654 4567777776
Q ss_pred HHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCC---CCCCChhh
Q psy10236 133 LTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCP---TVFMDIFD 209 (515)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEP---tsgLD~~~ 209 (515)
+..+.. .. ..|.++++-+...+.+|++++|||| |+++|..+
T Consensus 86 ls~g~s----------~f--------------------------~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~ 129 (216)
T cd03284 86 LAGGRS----------TF--------------------------MVEMVETANILNNATERSLVLLDEIGRGTSTYDGLS 129 (216)
T ss_pred hccCcc----------hH--------------------------HHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHH
Confidence 643210 00 1222333333334579999999999 88888755
Q ss_pred HHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 210 TFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 210 ~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
. ...+++.+.+. + .++|+++|+. ++.+++|++..+.+|++...+..+++..
T Consensus 130 ~--~~~il~~l~~~~~------~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~~ 181 (216)
T cd03284 130 I--AWAIVEYLHEKIG------AKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVVF 181 (216)
T ss_pred H--HHHHHHHHHhccC------CcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEEE
Confidence 2 23344555544 4 6888899973 7888999988888999988877776643
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.54 E-value=4e-15 Score=140.83 Aligned_cols=94 Identities=12% Similarity=0.099 Sum_probs=65.3
Q ss_pred HHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHH-HHHHHHHhC-CCCCCCCcEEEEEe
Q psy10236 160 EELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLV-EFLRGWASG-GPAGMAGKMVILTL 237 (515)
Q Consensus 160 ~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~-~~L~~l~~~-g~~~~~~~tiiis~ 237 (515)
..+++.+..++..+++|+|++|...+.. .+.+|+++++|||++|+|+.....+. .+++.+.++ + .++|+++
T Consensus 47 ~~~~~~d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~------~~iii~T 119 (185)
T smart00534 47 TRIGASDSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIG------ALTLFAT 119 (185)
T ss_pred EEeCCCCchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCC------CeEEEEe
Confidence 3445555566777889998887433333 23499999999999999999877764 556777663 4 6888889
Q ss_pred CCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 238 QPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 238 h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
|++ ++.+++|+.--+..++....
T Consensus 120 H~~--~l~~~~~~~~~v~~~~~~~~ 142 (185)
T smart00534 120 HYH--ELTKLADEHPGVRNLHMSAD 142 (185)
T ss_pred cHH--HHHHHhhcCccceEEEEEEE
Confidence 875 68888886444444544433
No 419
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.51 E-value=2.3e-14 Score=138.98 Aligned_cols=89 Identities=21% Similarity=0.310 Sum_probs=66.2
Q ss_pred HHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCC
Q psy10236 152 SEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM----SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAG 227 (515)
Q Consensus 152 ~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~----~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~ 227 (515)
.+.+.+.+...++... .||||||.+++||--|+ .+.++++||||.++||...+..+.++|+++.++
T Consensus 120 ~~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~---- 189 (220)
T PF02463_consen 120 LKDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ---- 189 (220)
T ss_dssp HHHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT----
T ss_pred cccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence 3556666776666443 89999999999997664 477999999999999999999999999998653
Q ss_pred CCCcEEEEEeCCCchHHHhhccEEEEEe
Q psy10236 228 MAGKMVILTLQPPTYEIFTMISRVLLVS 255 (515)
Q Consensus 228 ~~~~tiiis~h~~~~~i~~~~Drv~vL~ 255 (515)
.-+|+++|++ .++..+|+.+.+.
T Consensus 190 ---~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 190 ---SQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp ---SEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ---cccccccccc--ccccccccccccc
Confidence 4678888864 6899999887763
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.47 E-value=1.5e-12 Score=135.74 Aligned_cols=76 Identities=28% Similarity=0.298 Sum_probs=63.0
Q ss_pred CCChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHH
Q psy10236 174 RLTTSELKRLSIACCLM---------SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEI 244 (515)
Q Consensus 174 ~LSGGerqRv~IA~aL~---------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i 244 (515)
.+|.||+|++.+|+.|+ .+|+|++||||+++||+..+..+.+.|.++ + ..+++|+|++. .+
T Consensus 273 ~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~------~qv~it~~~~~-~~ 342 (361)
T PRK00064 273 FGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---G------AQVFITTTDLE-DL 342 (361)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---C------CEEEEEcCChh-hh
Confidence 49999999999999886 699999999999999999999999998754 2 46777777643 45
Q ss_pred Hhhc--cEEEEEeCCeE
Q psy10236 245 FTMI--SRVLLVSGGRT 259 (515)
Q Consensus 245 ~~~~--Drv~vL~~G~i 259 (515)
...+ +++..+++|++
T Consensus 343 ~~~~~~~~i~~v~~G~i 359 (361)
T PRK00064 343 ADLLENAKIFHVEQGKI 359 (361)
T ss_pred hhhhccCcEEEEeCCEE
Confidence 4453 57899999986
No 421
>KOG0063|consensus
Probab=99.43 E-value=2.8e-13 Score=138.20 Aligned_cols=178 Identities=17% Similarity=0.271 Sum_probs=120.3
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEe----c-------CCCCCCCCCHHHHH
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVR----S-------QSFLSPELNVAQTL 133 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~----q-------~~~~~~~lTv~e~l 133 (515)
+||++++++|.||-||||-+++++|..+|.-|.-. ++ ..|...++|.. | ++.+-.... .+++
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~p-----p~w~~il~~frgselq~yftk~le~~lk~~~k-pQyv 170 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NP-----PDWQEILTYFRGSELQNYFTKILEDNLKAIIK-PQYV 170 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CC-----cchHHHhhhhhhHHHhhhhhhhccccccCcCC-hHHH
Confidence 58999999999999999999999999998755321 01 11111111110 0 000000000 0111
Q ss_pred H-HHhhcCCCC-CCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHH
Q psy10236 134 T-FYSHLRRPP-KHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTF 211 (515)
Q Consensus 134 ~-~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~ 211 (515)
. +....++.- ........++..+++++.+.|.+..++-+..|||||-||.+||++-+++.++.++|||.+-||...+.
T Consensus 171 d~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRL 250 (592)
T KOG0063|consen 171 DQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRL 250 (592)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhh
Confidence 1 110000000 00001122235667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC
Q psy10236 212 FLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG 256 (515)
Q Consensus 212 ~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~ 256 (515)
.-...++.+.... +-||++-|+.+ -+--+.|-+.+|..
T Consensus 251 kaA~~IRsl~~p~------~YiIVVEHDLs-VLDylSDFiCcLYG 288 (592)
T KOG0063|consen 251 KAAITIRSLINPD------RYIIVVEHDLS-VLDYLSDFICCLYG 288 (592)
T ss_pred hHHHHHHHhhCCC------CeEEEEEeech-HHHhhhcceeEEec
Confidence 9999999997654 67888888753 34456788888864
No 422
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.43 E-value=2.5e-13 Score=131.25 Aligned_cols=45 Identities=18% Similarity=0.098 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCC-----CCCChhhHHHHHHHHHHHHh
Q psy10236 178 SELKRLSIACCLMSHADILLLDCPT-----VFMDIFDTFFLVEFLRGWAS 222 (515)
Q Consensus 178 GerqRv~IA~aL~~~p~lLlLDEPt-----sgLD~~~~~~i~~~L~~l~~ 222 (515)
-|++++.||++++.+|+++++|||| +|||+..+..+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999874
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.42 E-value=2.4e-13 Score=116.26 Aligned_cols=74 Identities=14% Similarity=0.060 Sum_probs=61.5
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceEEEecCCCCCCCCCHH
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLVYVRSQSFLSPELNVA 130 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTv~ 130 (515)
..+|+++++++++||+++|+||||||||||++++. +|++.++|.++.. ...++.+++++|+ + ...|++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--l-f~~ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--G-LEIRLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--c-chhhHH
Confidence 46899999999999999999999999999999987 7899999998743 3345567777776 3 345999
Q ss_pred HHHHHH
Q psy10236 131 QTLTFY 136 (515)
Q Consensus 131 e~l~~~ 136 (515)
|||.++
T Consensus 73 ~Ni~~~ 78 (107)
T cd00820 73 LNIFLI 78 (107)
T ss_pred hhceee
Confidence 999874
No 424
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.42 E-value=1.3e-12 Score=126.47 Aligned_cols=132 Identities=15% Similarity=0.065 Sum_probs=86.2
Q ss_pred ceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhC--CCCCCeeEEEECCeeCChhhhccceEEEecCCCCC-CCCCHHH
Q psy10236 55 CFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAG--RNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLS-PELNVAQ 131 (515)
Q Consensus 55 ~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G--~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~-~~lTv~e 131 (515)
.|=+|+++.=..+.+++|.||||+|||||||.|+. .. +..|...... ...++|..|..... ...++.+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~--------~~~~~~~d~i~~~l~~~~si~~ 87 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD--------SATIGLVDKIFTRMSSRESVSS 87 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC--------CcEEeeeeeeeeeeCCccChhh
Confidence 34556665422237999999999999999999984 22 3445443321 22356665532111 1111111
Q ss_pred HHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCC--hHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhh
Q psy10236 132 TLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLT--TSELKRLSIACCLMSHADILLLDCPTVFMDIFD 209 (515)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LS--GGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~ 209 (515)
.+| .-|.||++++++++.+|+++++|||++|+|+..
T Consensus 88 ------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~ 125 (213)
T cd03281 88 ------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTED 125 (213)
T ss_pred ------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHH
Confidence 112 357799999999999999999999999999976
Q ss_pred HHHH-HHHHHHHHhCCCCCCCCcEEEEEeCCC
Q psy10236 210 TFFL-VEFLRGWASGGPAGMAGKMVILTLQPP 240 (515)
Q Consensus 210 ~~~i-~~~L~~l~~~g~~~~~~~tiiis~h~~ 240 (515)
...+ .+.++.+.+.+. .+.++|+++|..
T Consensus 126 ~~~~~~ail~~l~~~~~---~~~~vli~TH~~ 154 (213)
T cd03281 126 GAGLLIATIEHLLKRGP---ECPRVIVSTHFH 154 (213)
T ss_pred HHHHHHHHHHHHHhcCC---CCcEEEEEcChH
Confidence 4444 568888876420 124788888875
No 425
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.40 E-value=4.7e-13 Score=151.24 Aligned_cols=143 Identities=13% Similarity=0.084 Sum_probs=96.9
Q ss_pred eEEEEeeEEeCCCCCcceee-----eeEEEEecC-eEEEEEcCCCchHHHHHHHHhCC-CCCCeeEEEECCeeCChhhhc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQ-----GVSFEVKGS-EVLAIMSTSALEGKAILDALAGR-NDAKAFQVILNGHSIPLNALK 111 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~-----~vs~~v~~G-ei~aIiG~nGaGKSTLl~~L~G~-~~~~~G~I~~~G~~~~~~~~~ 111 (515)
.+.++++.. ++++ .+|+.+.+| ++++|.||||+|||||||+|+|. +.+..|
T Consensus 295 ~i~l~~~rh-------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G--------------- 352 (771)
T TIGR01069 295 KIILENARH-------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG--------------- 352 (771)
T ss_pred CEEEccccC-------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC---------------
Confidence 466666643 2343 378888887 99999999999999999999986 233332
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHh
Q psy10236 112 RRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMS 191 (515)
Q Consensus 112 ~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~ 191 (515)
.+|+..... .+.+.+.+. ..+|..+.....+.++|+|+++++.|++.+ .
T Consensus 353 ---~~Vpa~~~~--~~~~~d~i~-------------------------~~i~~~~si~~~LStfS~~m~~~~~il~~~-~ 401 (771)
T TIGR01069 353 ---IPIPANEHS--EIPYFEEIF-------------------------ADIGDEQSIEQNLSTFSGHMKNISAILSKT-T 401 (771)
T ss_pred ---CCccCCccc--cccchhhee-------------------------eecChHhHHhhhhhHHHHHHHHHHHHHHhc-C
Confidence 133322110 001111110 000111112234567999999999998877 8
Q ss_pred CCCEEEEeCCCCCCChhhHHHH-HHHHHHHHhCCCCCCCCcEEEEEeCCC
Q psy10236 192 HADILLLDCPTVFMDIFDTFFL-VEFLRGWASGGPAGMAGKMVILTLQPP 240 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i-~~~L~~l~~~g~~~~~~~tiiis~h~~ 240 (515)
+|+++|+|||++|+|+.....+ ..+|+.+.+.| .++|++||+.
T Consensus 402 ~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g------~~viitTH~~ 445 (771)
T TIGR01069 402 ENSLVLFDELGAGTDPDEGSALAISILEYLLKQN------AQVLITTHYK 445 (771)
T ss_pred CCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcC------CEEEEECChH
Confidence 9999999999999999999988 57788887765 6888888874
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.37 E-value=4e-12 Score=123.56 Aligned_cols=139 Identities=12% Similarity=0.073 Sum_probs=89.6
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhC-CCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHH
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAG-RNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQT 132 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G-~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~ 132 (515)
..+.+|+++.+.+|++++|.||||+||||++++|++ .+.+..|...... .. .++|..|- +-.+...|+
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~-------~~~~~~~i---~~~~~~~d~ 86 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SA-------TLSIFDSV---LTRMGASDS 86 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ce-------EEeccceE---EEEecCccc
Confidence 468999999999999999999999999999999999 5667777654432 11 12222211 100001111
Q ss_pred HHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCC--hHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhH
Q psy10236 133 LTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLT--TSELKRLSIACCLMSHADILLLDCPTVFMDIFDT 210 (515)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LS--GGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~ 210 (515)
+. .++| ..|-+|++-...-+.+|+++|+|||.+|.|+...
T Consensus 87 ~~--------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~ 128 (222)
T cd03287 87 IQ--------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDG 128 (222)
T ss_pred cc--------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhH
Confidence 10 0111 1334444444445668999999999999997776
Q ss_pred HHH-HHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhc
Q psy10236 211 FFL-VEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMI 248 (515)
Q Consensus 211 ~~i-~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~ 248 (515)
..+ ..+++.+.+.. +.++|+++|.+ ++.++.
T Consensus 129 ~~i~~~il~~l~~~~-----~~~~i~~TH~~--~l~~~~ 160 (222)
T cd03287 129 IAIAYATLHYLLEEK-----KCLVLFVTHYP--SLGEIL 160 (222)
T ss_pred HHHHHHHHHHHHhcc-----CCeEEEEcccH--HHHHHH
Confidence 664 56777777652 27888888875 444444
No 427
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.33 E-value=3.7e-11 Score=127.48 Aligned_cols=177 Identities=14% Similarity=0.120 Sum_probs=111.9
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeC---C--------hhhhccceEEEecCC
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI---P--------LNALKRRLVYVRSQS 121 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~---~--------~~~~~~~i~yv~q~~ 121 (515)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++.|.|.+.|+.- . ...+++.+.++.+.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 45689999 99999999999999999999999999999999999999966543 1 122566788887643
Q ss_pred CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCCh-HHHHHHHHHHHHHhCCCEEEEeC
Q psy10236 122 FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTT-SELKRLSIACCLMSHADILLLDC 200 (515)
Q Consensus 122 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSG-GerqRv~IA~aL~~~p~lLlLDE 200 (515)
. ++.+-+.-+. ..-.+.+....-|-.-. -...+|+- -+-+ |++. +.+.|
T Consensus 224 ~-----~~~~r~~~~~-------------~a~~iAEyfr~~g~~Vl--l~~Dsltr~A~A~-----rEis-----l~~ge 273 (438)
T PRK07721 224 Q-----PALMRIKGAY-------------TATAIAEYFRDQGLNVM--LMMDSVTRVAMAQ-----REIG-----LAVGE 273 (438)
T ss_pred C-----CHHHHHHHHH-------------HHHHHHHHHHHCCCcEE--EEEeChHHHHHHH-----HHHH-----HhcCC
Confidence 2 1111111000 00011111111121000 00001110 0111 1110 01234
Q ss_pred C--CCCCChhhHHHHHHHHHHHHhCCCCCCCCc-----EEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccc
Q psy10236 201 P--TVFMDIFDTFFLVEFLRGWASGGPAGMAGK-----MVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRD 267 (515)
Q Consensus 201 P--tsgLD~~~~~~i~~~L~~l~~~g~~~~~~~-----tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~ 267 (515)
| |+|+|+.....+.++++++...+ .|+ ||++.+|+.. ..+||++.++.+|+++.+++.++
T Consensus 274 ~P~~~G~dp~~~~~l~~ller~~~~~----~GsIT~~~TVlv~~hdm~---e~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 274 PPTTKGYTPSVFAILPKLLERTGTNA----SGSITAFYTVLVDGDDMN---EPIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred CCccccCCHHHHHHHHHHHHHhcCCC----CCCeeeEEEEEEECCCCC---chhhhhEEEecCEEEEEeccHHH
Confidence 3 68999999999999999987411 135 8888888753 37899999999999999998765
No 428
>PRK14079 recF recombination protein F; Provisional
Probab=99.31 E-value=6.2e-11 Score=123.14 Aligned_cols=76 Identities=17% Similarity=0.089 Sum_probs=62.2
Q ss_pred CChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHH
Q psy10236 175 LTTSELKRLSIACCLM---------SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIF 245 (515)
Q Consensus 175 LSGGerqRv~IA~aL~---------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~ 245 (515)
+|+||||++.+|..|+ .+|++++||||+++||...+..+.+.|.... -+++|+.+ ..
T Consensus 264 ~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~----------q~~it~t~----~~ 329 (349)
T PRK14079 264 ASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP----------QAIVAGTE----AP 329 (349)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC----------cEEEEcCC----CC
Confidence 8999999999999999 8999999999999999999999998886431 23444332 34
Q ss_pred hhccEEEEEeCCeEEEecC
Q psy10236 246 TMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 246 ~~~Drv~vL~~G~iv~~G~ 264 (515)
..+|+++.+.+|++.-..|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~ 348 (349)
T PRK14079 330 PGAALTLRIEAGVFTPEAP 348 (349)
T ss_pred CCCceEEEEeccEecCCCC
Confidence 6899999999998764433
No 429
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.26 E-value=6.9e-11 Score=115.76 Aligned_cols=150 Identities=15% Similarity=0.165 Sum_probs=91.4
Q ss_pred EEecCeEEEEEcCCCchHHHH-HHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCC
Q psy10236 63 EVKGSEVLAIMSTSALEGKAI-LDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRR 141 (515)
Q Consensus 63 ~v~~Gei~aIiG~nGaGKSTL-l~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~ 141 (515)
-+++|++++|.|+|||||||| ++.+++..++.. ++.|+..+ .+..+.+.....+..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~-----------------~~~yi~~e------~~~~~~~~~~~~~g~ 76 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGY-----------------SVSYVSTQ------LTTTEFIKQMMSLGY 76 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCC-----------------cEEEEeCC------CCHHHHHHHHHHhCC
Confidence 378999999999999999999 789888755332 23444321 244444443322211
Q ss_pred CCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCC----ChhhHHHH
Q psy10236 142 PPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM----SHADILLLDCPTVFM----DIFDTFFL 213 (515)
Q Consensus 142 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~----~~p~lLlLDEPtsgL----D~~~~~~i 213 (515)
. +++.... |.-...+-. ..+|+++.++-.+.+.+- .+|+++++||||+++ |+....++
T Consensus 77 ~------------~~~~~~~-~~l~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l 142 (230)
T PRK08533 77 D------------INKKLIS-GKLLYIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDL 142 (230)
T ss_pred c------------hHHHhhc-CcEEEEEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHH
Confidence 0 0001110 100011111 135666655544444333 369999999999999 77888889
Q ss_pred HHHHHHHHhCCCCCCCCcEEEEEeCCCch------HHHhhccEEEEEe
Q psy10236 214 VEFLRGWASGGPAGMAGKMVILTLQPPTY------EIFTMISRVLLVS 255 (515)
Q Consensus 214 ~~~L~~l~~~g~~~~~~~tiiis~h~~~~------~i~~~~Drv~vL~ 255 (515)
.+.++.+++.| .|+++++++... .+..++|-|+.|+
T Consensus 143 ~~~l~~l~~~g------~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 143 MAFFKRISSLN------KVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHhCC------CEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 99999998766 678777775421 1244667788776
No 430
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.26 E-value=7.6e-12 Score=141.86 Aligned_cols=149 Identities=15% Similarity=0.121 Sum_probs=95.8
Q ss_pred eeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceE-EEecCCCCCCCCCHHHHHHHH
Q psy10236 58 QGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLV-YVRSQSFLSPELNVAQTLTFY 136 (515)
Q Consensus 58 ~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~-yv~q~~~~~~~lTv~e~l~~~ 136 (515)
+|+++. ..+.++.|.|||++||||+||.++... +-..+| +||-... ..+.+.+++
T Consensus 319 ndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~------------------~maq~G~~vpa~~~--~~i~~~~~i--- 374 (782)
T PRK00409 319 KDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAA------------------LMAKSGLPIPANEP--SEIPVFKEI--- 374 (782)
T ss_pred ceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHH------------------HHHHhCCCcccCCC--ccccccceE---
Confidence 344433 345789999999999999999996431 111111 3322210 011111111
Q ss_pred hhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHH-
Q psy10236 137 SHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVE- 215 (515)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~- 215 (515)
+..+|-.+.....++++|+|++|++.|++++ .+|+++|+|||++|+|+.....+..
T Consensus 375 ----------------------~~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~a 431 (782)
T PRK00409 375 ----------------------FADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAIS 431 (782)
T ss_pred ----------------------EEecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHH
Confidence 1122223334456678999999999999998 8999999999999999999888854
Q ss_pred HHHHHHhCCCCCCCCcEEEEEeCCCchHHHh-hccEEEEEeCCeEEEe
Q psy10236 216 FLRGWASGGPAGMAGKMVILTLQPPTYEIFT-MISRVLLVSGGRTMYS 262 (515)
Q Consensus 216 ~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~-~~Drv~vL~~G~iv~~ 262 (515)
++..+.+.| .++|+++|++ ++.. .+|+..++ ++.+.+.
T Consensus 432 ile~l~~~~------~~vIitTH~~--el~~~~~~~~~v~-~~~~~~d 470 (782)
T PRK00409 432 ILEYLRKRG------AKIIATTHYK--ELKALMYNREGVE-NASVEFD 470 (782)
T ss_pred HHHHHHHCC------CEEEEECChH--HHHHHHhcCCCeE-EEEEEEe
Confidence 677776655 7888888874 3443 44544443 4556553
No 431
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.26 E-value=1.1e-11 Score=136.73 Aligned_cols=79 Identities=19% Similarity=0.176 Sum_probs=68.3
Q ss_pred cccCCChHHHHHHHHHHHHH----------hCCCEEEEeCCC-CCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCC
Q psy10236 171 RVGRLTTSELKRLSIACCLM----------SHADILLLDCPT-VFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQP 239 (515)
Q Consensus 171 ~v~~LSGGerqRv~IA~aL~----------~~p~lLlLDEPt-sgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~ 239 (515)
.+.+||||||||++||++|+ .+|+++|||||| ++||+..+..+.+.|+++ .+ .+||+++|+
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~------~~iiiish~ 536 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KD------TNVFVISHK 536 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CC------CeEEEEECc
Confidence 45679999999999999987 599999999998 789999999999999988 34 788989998
Q ss_pred CchHHHhhccEEEEEeC-CeE
Q psy10236 240 PTYEIFTMISRVLLVSG-GRT 259 (515)
Q Consensus 240 ~~~~i~~~~Drv~vL~~-G~i 259 (515)
+ +....||++++|.+ |+.
T Consensus 537 ~--~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 537 D--HDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred h--hchhhhhcEEEEEEECCe
Confidence 5 46678999999975 554
No 432
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.25 E-value=7.1e-12 Score=123.81 Aligned_cols=180 Identities=11% Similarity=0.094 Sum_probs=103.5
Q ss_pred EEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCee--EEEE--CCe-eCChhhhccc---eEEEecCCCCCCCCCHH---
Q psy10236 62 FEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAF--QVIL--NGH-SIPLNALKRR---LVYVRSQSFLSPELNVA--- 130 (515)
Q Consensus 62 ~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G--~I~~--~G~-~~~~~~~~~~---i~yv~q~~~~~~~lTv~--- 130 (515)
+.+.+||.++|+||+|+|||||++.|++......+ .+.+ -++ ......+.+. +..+.+-+. .+...++
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~ 89 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAE 89 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHH
Confidence 46789999999999999999999999998876533 2221 222 1222222222 222333222 1111110
Q ss_pred HHHHHHhhcCC-CCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHH--------HHHHHHHHHHHhCCCEEEEeCC
Q psy10236 131 QTLTFYSHLRR-PPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSE--------LKRLSIACCLMSHADILLLDCP 201 (515)
Q Consensus 131 e~l~~~~~~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGe--------rqRv~IA~aL~~~p~lLlLDEP 201 (515)
.-+..+..++. .....--.+.-.+..+..++..+.. -..+|||+ +||+++||++..+++|.+| |
T Consensus 90 ~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~-----G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~ 162 (249)
T cd01128 90 MVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPS-----GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--A 162 (249)
T ss_pred HHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccC-----CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--e
Confidence 11111111110 0000000000112222233333221 12379999 9999999999999999999 9
Q ss_pred CCCCChhhHHH-HHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 202 TVFMDIFDTFF-LVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 202 tsgLD~~~~~~-i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
|+.+|..+... ++ +.++...+ .+.|+.+|.. .....+|.|.+|..|++
T Consensus 163 T~~~d~~~~~~~~i--~~~~~~~~------~~~ivls~~l--a~~~~~paI~vl~s~sr 211 (249)
T cd01128 163 TALVDTGSRMDDVI--FEEFKGTG------NMELVLDRRL--AERRIFPAIDILKSGTR 211 (249)
T ss_pred eheecCCCcccchH--HHHHhcCC------CcEEEEchHH--hhCCCCCeEEEcCCCCc
Confidence 99999655433 44 44444333 6778888864 45678999999999987
No 433
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.25 E-value=1.9e-11 Score=143.89 Aligned_cols=88 Identities=17% Similarity=0.040 Sum_probs=77.5
Q ss_pred CCcccccCcccCCChHHHHHHHHHHHHHh----------CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcE
Q psy10236 163 GLTQVLSTRVGRLTTSELKRLSIACCLMS----------HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKM 232 (515)
Q Consensus 163 gL~~~~~~~v~~LSGGerqRv~IA~aL~~----------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~t 232 (515)
++....++++++|||||++||+||++|+. +|++||+||||+|||+.+...+++.|++++..| ++
T Consensus 939 ~~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g------~~ 1012 (1042)
T TIGR00618 939 DAYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGS------KM 1012 (1042)
T ss_pred eCCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCC------CE
Confidence 34456677889999999999999999986 799999999999999999999999999998755 88
Q ss_pred EEEEeCCCchHHHhhccEEEEEeCC
Q psy10236 233 VILTLQPPTYEIFTMISRVLLVSGG 257 (515)
Q Consensus 233 iiis~h~~~~~i~~~~Drv~vL~~G 257 (515)
|+|++|.+ .....++|+|.|++.|
T Consensus 1013 i~iisH~~-~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1013 IGIISHVP-EFRERIPHRILVKKTN 1036 (1042)
T ss_pred EEEEeCcH-HHHHhhCCEEEEEECC
Confidence 99999985 4688899999999754
No 434
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.24 E-value=1.7e-11 Score=135.22 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=68.2
Q ss_pred CCChHHHHHHHHHHHHHhC----CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhcc
Q psy10236 174 RLTTSELKRLSIACCLMSH----ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMIS 249 (515)
Q Consensus 174 ~LSGGerqRv~IA~aL~~~----p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~D 249 (515)
.+||||+||++||++++.. |+++|+||||+|||+.++..+.+.|+++++ + ++||+++|++ .+...||
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~------~~vi~iTH~~--~~~~~ad 510 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-R------HQVLCVTHLP--QVAAHAD 510 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-C------CEEEEEEChH--HHHHhcC
Confidence 3899999999999999985 699999999999999999999999999974 4 7999999986 3557899
Q ss_pred EEEEEeCCe
Q psy10236 250 RVLLVSGGR 258 (515)
Q Consensus 250 rv~vL~~G~ 258 (515)
++++|++|.
T Consensus 511 ~~~~l~k~~ 519 (563)
T TIGR00634 511 AHFKVEKEG 519 (563)
T ss_pred eEEEEEEcc
Confidence 999998875
No 435
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.22 E-value=1.6e-10 Score=108.75 Aligned_cols=145 Identities=10% Similarity=0.054 Sum_probs=98.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCC-CCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCc
Q psy10236 69 VLAIMSTSALEGKAILDALAGR-NDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSI 147 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~-~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~ 147 (515)
++.|.||+|+|||||.--++-. .+ +| ..+.|+.-+ .|..+.+.....+...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~--------~g---------~~v~~~s~e------~~~~~~~~~~~~~g~~----- 52 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA--------RG---------EPGLYVTLE------ESPEELIENAESLGWD----- 52 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH--------CC---------CcEEEEECC------CCHHHHHHHHHHcCCC-----
Confidence 3678999999999987755421 11 11 234455321 2444444333222110
Q ss_pred hhhHHHHHHHHHHHcCCcccccCcccCCChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCC---hhhHHHHHHHHH
Q psy10236 148 KVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELK------RLSIACCLMSHADILLLDCPTVFMD---IFDTFFLVEFLR 218 (515)
Q Consensus 148 ~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerq------Rv~IA~aL~~~p~lLlLDEPtsgLD---~~~~~~i~~~L~ 218 (515)
. +.+...|+....+..+..+|+|++| +.........+|+++++|||++.+| ...+..+.+.++
T Consensus 53 ---~-----~~l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~ 124 (187)
T cd01124 53 ---L-----ERLEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLF 124 (187)
T ss_pred ---h-----HHHHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHH
Confidence 0 1123456656678888899999998 5555555678999999999999999 778888888998
Q ss_pred HHHhCCCCCCCCcEEEEEeCCCch--------HHHhhccEEEEEe
Q psy10236 219 GWASGGPAGMAGKMVILTLQPPTY--------EIFTMISRVLLVS 255 (515)
Q Consensus 219 ~l~~~g~~~~~~~tiiis~h~~~~--------~i~~~~Drv~vL~ 255 (515)
.+++.| .|+|+++|.... .+..+||.++.|+
T Consensus 125 ~l~~~g------~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 125 ALKRFG------VTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHHCC------CEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 888766 788888886542 2678899999996
No 436
>PRK10869 recombination and repair protein; Provisional
Probab=99.19 E-value=5.6e-11 Score=130.31 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=67.7
Q ss_pred CChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccE
Q psy10236 175 LTTSELKRLSIACCLMS----HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISR 250 (515)
Q Consensus 175 LSGGerqRv~IA~aL~~----~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Dr 250 (515)
+||||+||++||++++. +|+++|+|||++|||..++..+.+.|+++++ + .+||+++|+| .+..+||+
T Consensus 431 lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~------~qvi~iTH~~--~~~~~ad~ 501 (553)
T PRK10869 431 ASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-S------TQVMCVTHLP--QVAGCGHQ 501 (553)
T ss_pred CCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-C------CEEEEEecCH--HHHHhCCE
Confidence 79999999999999997 5899999999999999999999999999964 3 6899999987 46689999
Q ss_pred EEEEeCCe
Q psy10236 251 VLLVSGGR 258 (515)
Q Consensus 251 v~vL~~G~ 258 (515)
.+++.++.
T Consensus 502 ~~~v~k~~ 509 (553)
T PRK10869 502 HFFVSKET 509 (553)
T ss_pred EEEEeccc
Confidence 99998754
No 437
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.19 E-value=2.4e-10 Score=125.25 Aligned_cols=137 Identities=23% Similarity=0.359 Sum_probs=107.3
Q ss_pred CCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHH------HHHHcCCc-ccccCcccCCChHHHHHHHHHHHHHhCC--C
Q psy10236 124 SPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGL------LIEELGLT-QVLSTRVGRLTTSELKRLSIACCLMSHA--D 194 (515)
Q Consensus 124 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~------~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~aL~~~p--~ 194 (515)
+..|++.+.+.|...+..... .....+..+.+ .|..+||. -.+++..++|||||.||+-+|..+-++= -
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~--~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGV 503 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK--EKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGV 503 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh--hHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceee
Confidence 345788888888776653211 11111222222 34456885 4578889999999999999999997653 5
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE------eCCeEEEecCccch
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV------SGGRTMYSGKRRDM 268 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL------~~G~iv~~G~~~~~ 268 (515)
+++||||+.||-+..-..+++.|++|++.| .|+|++-|++ +....||+|+=| +.|+|++.|+++++
T Consensus 504 lYVLDEPSIGLHqrDn~rLi~tL~~LRDlG------NTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i 575 (935)
T COG0178 504 LYVLDEPSIGLHQRDNERLIETLKRLRDLG------NTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEEL 575 (935)
T ss_pred EEEecCCccCCChhhHHHHHHHHHHHHhcC------CeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHH
Confidence 789999999999999999999999999987 8999999974 688899999987 57999999999998
Q ss_pred HH
Q psy10236 269 LP 270 (515)
Q Consensus 269 ~~ 270 (515)
+.
T Consensus 576 ~~ 577 (935)
T COG0178 576 LA 577 (935)
T ss_pred Hh
Confidence 75
No 438
>PRK13695 putative NTPase; Provisional
Probab=99.17 E-value=1.3e-11 Score=115.45 Aligned_cols=81 Identities=19% Similarity=0.171 Sum_probs=63.6
Q ss_pred CcccCCChHHHHHHHHHHHHHhCCCEEEEeCC--CCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhh
Q psy10236 170 TRVGRLTTSELKRLSIACCLMSHADILLLDCP--TVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTM 247 (515)
Q Consensus 170 ~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEP--tsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~ 247 (515)
+.+..+||+++-+..+++..+.+|+++++||| +.++|. .+.+.+.++.+.+ +++|+++|.. .+...
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~----~~~~~l~~~~~~~------~~~i~v~h~~--~~~~~ 141 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSP----KFVKAVEEVLDSE------KPVIATLHRR--SVHPF 141 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH----HHHHHHHHHHhCC------CeEEEEECch--hhHHH
Confidence 44557999999999999999999999999995 444443 3456666665444 7899999963 46678
Q ss_pred ccEEEEEeCCeEEEe
Q psy10236 248 ISRVLLVSGGRTMYS 262 (515)
Q Consensus 248 ~Drv~vL~~G~iv~~ 262 (515)
+|++..+.+|++...
T Consensus 142 ~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 142 VQEIKSRPGGRVYEL 156 (174)
T ss_pred HHHHhccCCcEEEEE
Confidence 999999999988765
No 439
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.17 E-value=3.7e-11 Score=116.31 Aligned_cols=63 Identities=29% Similarity=0.349 Sum_probs=52.3
Q ss_pred cCCChHHHHHHHHHHHHHhCC---CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCc
Q psy10236 173 GRLTTSELKRLSIACCLMSHA---DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPT 241 (515)
Q Consensus 173 ~~LSGGerqRv~IA~aL~~~p---~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~ 241 (515)
..+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.|++.++.+ .-+|+|||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~------~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKN------IQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGS------SEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccC------CEEEEeCccch
Confidence 347999999999999988776 8999999999999999999999998887633 68999999863
No 440
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.14 E-value=1.7e-10 Score=121.64 Aligned_cols=169 Identities=13% Similarity=0.087 Sum_probs=116.7
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEe
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVR 118 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~ 118 (515)
.++-+.++..+. .+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++.|.|.+.|+..
T Consensus 130 ~~~r~~i~~~l~-TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg------------- 194 (432)
T PRK06793 130 AFEREEITDVFE-TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG------------- 194 (432)
T ss_pred chheechhhccC-CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc-------------
Confidence 356666665553 345688885 99999999999999999999999999999999988887766532
Q ss_pred cCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-cccCcccCCChHHHHHHHHHHHHH-------
Q psy10236 119 SQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-VLSTRVGRLTTSELKRLSIACCLM------- 190 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSGGerqRv~IA~aL~------- 190 (515)
.+|.|.+..... .-|+.. ..=....+-|.|+|+|+..+.+.+
T Consensus 195 --------~ev~e~~~~~l~----------------------~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~ 244 (432)
T PRK06793 195 --------REVKDFIRKELG----------------------EEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQ 244 (432)
T ss_pred --------ccHHHHHHHHhh----------------------hcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 245554432111 011110 001233468999999999998887
Q ss_pred hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCc
Q psy10236 191 SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKR 265 (515)
Q Consensus 191 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~ 265 (515)
.++-++++|+||+..|+. .++-..+.+.-.. |.+..+.+|++ ++++|.....+|.+...+..
T Consensus 245 G~~VLlilDslTr~a~A~--reisl~~~e~p~~------G~~~~~~s~l~-----~L~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 245 GNNVLLMMDSVTRFADAR--RSVDIAVKELPIG------GKTLLMESYMK-----KLLERSGKTQKGSITGIYTV 306 (432)
T ss_pred CCcEEEEecchHHHHHHH--HHHHHHhcCCCCC------Ceeeeeeccch-----hHHHHhccCCCcceEEEEEE
Confidence 789999999999999996 4555555544322 36777766642 34455555678888776654
No 441
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.12 E-value=1.5e-10 Score=118.28 Aligned_cols=142 Identities=13% Similarity=0.085 Sum_probs=96.4
Q ss_pred eEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCee-CChhhhccceEEEecCCC-CCCCCCHHHHHHHHh
Q psy10236 60 VSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHS-IPLNALKRRLVYVRSQSF-LSPELNVAQTLTFYS 137 (515)
Q Consensus 60 vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~-~~~~~~~~~i~yv~q~~~-~~~~lTv~e~l~~~~ 137 (515)
+++.+++|+.++|.||+|||||||+++|++.+++..|.+.+++.. +... ....+.++.+... -....|.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~-~~~~~~l~~~~~~~~~~~~~~-------- 207 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLP-HPNYVHLFYSKGGQGLAKVTP-------- 207 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCC-CCCEEEEEecCCCCCcCccCH--------
Confidence 457788999999999999999999999999999988888875421 1100 1122222211100 0000011
Q ss_pred hcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHH
Q psy10236 138 HLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFL 217 (515)
Q Consensus 138 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L 217 (515)
.-.++.+|-.+|+++++|||.+ .+..+.+
T Consensus 208 --------------------------------------------~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l 236 (308)
T TIGR02788 208 --------------------------------------------KDLLQSCLRMRPDRIILGELRG-------DEAFDFI 236 (308)
T ss_pred --------------------------------------------HHHHHHHhcCCCCeEEEeccCC-------HHHHHHH
Confidence 1134456777999999999995 3556777
Q ss_pred HHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 218 RGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 218 ~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+.+. .| ...++.|+|... .....||+..|..|++...|.+.+..
T Consensus 237 ~a~~-~g-----~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 237 RAVN-TG-----HPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHh-cC-----CCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 7765 33 245688888764 66779999999999998888877665
No 442
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.12 E-value=3.4e-10 Score=109.84 Aligned_cols=133 Identities=11% Similarity=0.100 Sum_probs=84.9
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-CeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHH
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-KAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQ 131 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e 131 (515)
++.+-+|++++.++|++++|.||||+||||+++++++..-. .. |-.++... ..++++ +.++..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~------G~~vpa~~--~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQM------GMDVPAKS--MRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHc------CCccCccc--cEeccc---cEEEEecCccc
Confidence 45689999999999999999999999999999999875321 11 11111110 111111 11122222222
Q ss_pred HHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCC--hHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhh
Q psy10236 132 TLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLT--TSELKRLSIACCLMSHADILLLDCPTVFMDIFD 209 (515)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LS--GGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~ 209 (515)
++.. ++| ..|-++++-....+.+|+++++|||.+|+|+..
T Consensus 85 ~~~~--------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~d 126 (218)
T cd03286 85 DIMK--------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGTSTHD 126 (218)
T ss_pred cccc--------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchH
Confidence 2210 011 124444444444457899999999999999999
Q ss_pred HHHHHHH-HHHHHhC-CCCCCCCcEEEEEeCCC
Q psy10236 210 TFFLVEF-LRGWASG-GPAGMAGKMVILTLQPP 240 (515)
Q Consensus 210 ~~~i~~~-L~~l~~~-g~~~~~~~tiiis~h~~ 240 (515)
...+... ++.+.+. + .++++++|..
T Consensus 127 g~~la~ail~~L~~~~~------~~~i~~TH~~ 153 (218)
T cd03286 127 GYAIAHAVLEYLVKKVK------CLTLFSTHYH 153 (218)
T ss_pred HHHHHHHHHHHHHHhcC------CcEEEEeccH
Confidence 8888888 7777764 4 6788888864
No 443
>PRK03918 chromosome segregation protein; Provisional
Probab=99.11 E-value=1.6e-10 Score=134.04 Aligned_cols=82 Identities=24% Similarity=0.235 Sum_probs=69.5
Q ss_pred cccCcccCCChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCC
Q psy10236 167 VLSTRVGRLTTSELK------RLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPP 240 (515)
Q Consensus 167 ~~~~~v~~LSGGerq------Rv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~ 240 (515)
..+.+++.|||||++ |+++|++++.+|+++|+||||+|||+..+..+.+.|+.++..+ .+||+++|++
T Consensus 781 g~~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~------~~iiiith~~ 854 (880)
T PRK03918 781 GKERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKI------PQVIIVSHDE 854 (880)
T ss_pred CCcCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcC------CEEEEEECCH
Confidence 345667789999999 4555667889999999999999999999999999999987654 6888888875
Q ss_pred chHHHhhccEEEEEeC
Q psy10236 241 TYEIFTMISRVLLVSG 256 (515)
Q Consensus 241 ~~~i~~~~Drv~vL~~ 256 (515)
++...||++++|..
T Consensus 855 --~~~~~~d~~~~l~~ 868 (880)
T PRK03918 855 --ELKDAADYVIRVSL 868 (880)
T ss_pred --HHHHhCCeEEEEEe
Confidence 47789999999973
No 444
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.10 E-value=2.7e-10 Score=103.67 Aligned_cols=130 Identities=17% Similarity=0.062 Sum_probs=75.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCch
Q psy10236 69 VLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIK 148 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~ 148 (515)
+++|.|+||+||||+++.+++...+..|.+.+.+.+..... ..+.+.. ...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~-------------------~~~~~~~---~~~------- 51 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE-------------------LTERLIG---ESL------- 51 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH-------------------HHHHHhh---hhh-------
Confidence 47899999999999999999987665555444332211110 0010000 000
Q ss_pred hhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCC----------CCChhhHHHHHHHHH
Q psy10236 149 VTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTV----------FMDIFDTFFLVEFLR 218 (515)
Q Consensus 149 ~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPts----------gLD~~~~~~i~~~L~ 218 (515)
....+............+.++.++...+++...+|+++++|||++ +.|......+.+++.
T Consensus 52 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 121 (165)
T cd01120 52 ----------KGALDNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLE 121 (165)
T ss_pred ----------ccccccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 000000011111222344556667888889999999999999995 445455556555555
Q ss_pred HHHhCCCCCCCCcEEEEEeCCCchH
Q psy10236 219 GWASGGPAGMAGKMVILTLQPPTYE 243 (515)
Q Consensus 219 ~l~~~g~~~~~~~tiiis~h~~~~~ 243 (515)
...+.+ .++|+++|.+..+
T Consensus 122 ~~~~~~------~~vv~~~~~~~~~ 140 (165)
T cd01120 122 RARKGG------VTVIFTLQVPSGD 140 (165)
T ss_pred HHhcCC------ceEEEEEecCCcc
Confidence 554434 7888888876543
No 445
>PRK01156 chromosome segregation protein; Provisional
Probab=99.04 E-value=1.1e-09 Score=127.34 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=66.2
Q ss_pred CcccCCChHHHHHHHH------HHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCCCCCCC-cEEEEEeCCCc
Q psy10236 170 TRVGRLTTSELKRLSI------ACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWAS-GGPAGMAG-KMVILTLQPPT 241 (515)
Q Consensus 170 ~~v~~LSGGerqRv~I------A~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~~~~~~-~tiiis~h~~~ 241 (515)
..+..||||||+|++| |++++.+|++++|||||+|||+..+..+.++|+.... .+ + .++|+++|++
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~-----~~~~ii~ish~~- 870 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSS-----DIPQVIMISHHR- 870 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC-----CCCeEEEEECch-
Confidence 4577899999999975 4899999999999999999999999999999986543 22 1 4788888875
Q ss_pred hHHHhhccEEEEEe
Q psy10236 242 YEIFTMISRVLLVS 255 (515)
Q Consensus 242 ~~i~~~~Drv~vL~ 255 (515)
+....||+++.+.
T Consensus 871 -~~~~~~d~ii~~~ 883 (895)
T PRK01156 871 -ELLSVADVAYEVK 883 (895)
T ss_pred -HHHHhcCeEEEEE
Confidence 4568999999996
No 446
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.01 E-value=1.1e-09 Score=128.85 Aligned_cols=82 Identities=16% Similarity=0.016 Sum_probs=69.2
Q ss_pred ccCcccCCChHHHHHHHHHHHHHh--------CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCC
Q psy10236 168 LSTRVGRLTTSELKRLSIACCLMS--------HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQP 239 (515)
Q Consensus 168 ~~~~v~~LSGGerqRv~IA~aL~~--------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~ 239 (515)
.++++++|||||+++++||++|+. +|++||+||||++||+.+...+++.|..+++.| ++|+|++|.
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g------~~v~iisH~ 1016 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASG------KTIGVISHV 1016 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCC------CEEEEEecH
Confidence 457899999999999999999996 899999999999999999999999999998766 899999995
Q ss_pred CchHHHhhccEEEEEeC
Q psy10236 240 PTYEIFTMISRVLLVSG 256 (515)
Q Consensus 240 ~~~~i~~~~Drv~vL~~ 256 (515)
+ ....++-.+|.|-..
T Consensus 1017 ~-~l~~~i~~qi~V~k~ 1032 (1047)
T PRK10246 1017 E-AMKERIPVQIKVKKI 1032 (1047)
T ss_pred H-HHHHhccceEEEEEC
Confidence 3 233445556666654
No 447
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.96 E-value=6.5e-09 Score=119.18 Aligned_cols=68 Identities=13% Similarity=0.143 Sum_probs=58.3
Q ss_pred HhCCCEEEEeCCCCCC-ChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHH---------hhccEEEEEeCCeE
Q psy10236 190 MSHADILLLDCPTVFM-DIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIF---------TMISRVLLVSGGRT 259 (515)
Q Consensus 190 ~~~p~lLlLDEPtsgL-D~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~---------~~~Drv~vL~~G~i 259 (515)
..+|+++++|||+.+| |+..+..+.+.++++++.| .++++++|++. ++. +.||++++|.+|++
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~------~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a 722 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKAN------CAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAA 722 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcC------CEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccc
Confidence 5799999999999999 6999999999999998876 68889999865 343 68999999999988
Q ss_pred EEecC
Q psy10236 260 MYSGK 264 (515)
Q Consensus 260 v~~G~ 264 (515)
...|.
T Consensus 723 ~~~~~ 727 (818)
T PRK13830 723 REPGT 727 (818)
T ss_pred cccch
Confidence 76654
No 448
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.94 E-value=1.1e-08 Score=94.69 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=52.3
Q ss_pred CcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCc
Q psy10236 170 TRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPT 241 (515)
Q Consensus 170 ~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~ 241 (515)
+.....|-||-=---+.+. .++.-|++||||-++|.+.-+..++..|+++++.| .-+||.+|.|.
T Consensus 125 ~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sG------aQ~IiATHSPi 189 (233)
T COG3910 125 RSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSG------AQIIIATHSPI 189 (233)
T ss_pred cchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcC------CeEEEEecChh
Confidence 3345578898654444433 45678999999999999999999999999999987 78899999874
No 449
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.94 E-value=6.3e-10 Score=117.37 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=47.0
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCee-EEEECCeeCC
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAF-QVILNGHSIP 106 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G-~I~~~G~~~~ 106 (515)
+.+|++||+++++||+++|+|||||||||||+ +|+..|++| +|.++|+++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence 35799999999999999999999999999999 788888887 7999999884
No 450
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.90 E-value=2e-09 Score=128.21 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=67.6
Q ss_pred ccCcccCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchH
Q psy10236 168 LSTRVGRLTTSELKRLSIACCLM----SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYE 243 (515)
Q Consensus 168 ~~~~v~~LSGGerqRv~IA~aL~----~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~ 243 (515)
.+..+..||||||||++||++++ .+|+++||||||+|||+.++..+.++|+.+++. .++|+++|++.
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~-------~~~i~~sh~~~-- 1153 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKN-------TQFIVITHNKG-- 1153 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccC-------CEEEEEEcChh--
Confidence 45677889999999999999985 677999999999999999999999999998642 56888888864
Q ss_pred HHhhccEEEEEe
Q psy10236 244 IFTMISRVLLVS 255 (515)
Q Consensus 244 i~~~~Drv~vL~ 255 (515)
....||+++.+.
T Consensus 1154 ~~~~~d~~~~~~ 1165 (1179)
T TIGR02168 1154 TMEVADQLYGVT 1165 (1179)
T ss_pred HHHHhhhHeeee
Confidence 567899998764
No 451
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.90 E-value=4e-09 Score=126.92 Aligned_cols=78 Identities=17% Similarity=0.085 Sum_probs=62.5
Q ss_pred cCcccCCChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCch
Q psy10236 169 STRVGRLTTSELK------RLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTY 242 (515)
Q Consensus 169 ~~~v~~LSGGerq------Rv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~ 242 (515)
....+.||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+..... ...+.+||+++|++ .
T Consensus 1194 ~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~-~~~~~~viiitHd~-~ 1271 (1311)
T TIGR00606 1194 LDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRS-QQRNFQLLVITHDE-D 1271 (1311)
T ss_pred cCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhh-hccCCeEEEEecCH-H
Confidence 3455789999999 99999999999999999999999999999999999988742100 00137899999975 4
Q ss_pred HHHhhc
Q psy10236 243 EIFTMI 248 (515)
Q Consensus 243 ~i~~~~ 248 (515)
.+..+|
T Consensus 1272 ~~~~~~ 1277 (1311)
T TIGR00606 1272 FVELLG 1277 (1311)
T ss_pred HHHHHh
Confidence 566654
No 452
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.89 E-value=4.6e-09 Score=112.36 Aligned_cols=142 Identities=16% Similarity=0.206 Sum_probs=94.5
Q ss_pred eeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHH
Q psy10236 56 FVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTF 135 (515)
Q Consensus 56 iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~ 135 (515)
++++.+..+.+|++++++||||+||||++..|++.+....|. ++++++.++. ...++.|+|.+
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~--------------~kV~LI~~Dt---~RigA~EQLr~ 307 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA--------------SKVALLTTDS---YRIGGHEQLRI 307 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC--------------CeEEEEeCCc---cchhHHHHHHH
Confidence 466777778899999999999999999999999876544442 2577887764 45789999999
Q ss_pred HhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHH-HHHHHHHHhCC-----CEEEEeCCCCCCChhh
Q psy10236 136 YSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKR-LSIACCLMSHA-----DILLLDCPTVFMDIFD 209 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqR-v~IA~aL~~~p-----~lLlLDEPtsgLD~~~ 209 (515)
++.....+.. ......+...+..++.+.....+.+...+++.. +.-..+++.++ .+|+||.++.+
T Consensus 308 ~AeilGVpv~----~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~----- 378 (484)
T PRK06995 308 YGKILGVPVH----AVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG----- 378 (484)
T ss_pred HHHHhCCCee----ccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-----
Confidence 8876543211 111223344556677766666777754444432 33444455554 68999999887
Q ss_pred HHHHHHHHHHHHhCC
Q psy10236 210 TFFLVEFLRGWASGG 224 (515)
Q Consensus 210 ~~~i~~~L~~l~~~g 224 (515)
..+.+.++.....+
T Consensus 379 -~~l~~i~~~f~~~~ 392 (484)
T PRK06995 379 -DTLNEVVQAYRGPG 392 (484)
T ss_pred -HHHHHHHHHhccCC
Confidence 34455555554433
No 453
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.82 E-value=7.2e-09 Score=123.61 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=67.3
Q ss_pred cCcccCCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHH
Q psy10236 169 STRVGRLTTSELKRLSIACCLMS----HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEI 244 (515)
Q Consensus 169 ~~~v~~LSGGerqRv~IA~aL~~----~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i 244 (515)
.+.+..||||||++++||.+++. +|+++|||||++|||+..+..+.++|++++.. ..+|+++|++ .+
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~-------~~~i~~t~~~--~~ 1139 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGE-------AQFIVVSLRS--PM 1139 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCC-------CeEEEEECcH--HH
Confidence 34566799999999999999985 78999999999999999999999999998643 4677777775 46
Q ss_pred HhhccEEEEEeC
Q psy10236 245 FTMISRVLLVSG 256 (515)
Q Consensus 245 ~~~~Drv~vL~~ 256 (515)
...||+++.+..
T Consensus 1140 ~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1140 IEYADRAIGVTM 1151 (1164)
T ss_pred HHhcceeEeEEE
Confidence 789999988753
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.82 E-value=6e-08 Score=95.10 Aligned_cols=163 Identities=11% Similarity=0.131 Sum_probs=94.3
Q ss_pred ceeeee-EEEEecCeEEEEEcCCCchHHHHHHHHhC-CCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHH
Q psy10236 55 CFVQGV-SFEVKGSEVLAIMSTSALEGKAILDALAG-RNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQT 132 (515)
Q Consensus 55 ~iL~~v-s~~v~~Gei~aIiG~nGaGKSTLl~~L~G-~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~ 132 (515)
.-|+.+ .+-+++|.++.|.|++|+|||||...++- ..+ . ...+.|+..+. +..+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~----------------g~~~~y~~~e~------~~~~~ 68 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-Q----------------GKKVYVITTEN------TSKSY 68 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-C----------------CCEEEEEEcCC------CHHHH
Confidence 345554 56799999999999999999999998752 111 1 12344554321 22222
Q ss_pred HHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHh--CCCEEEEeCCCCCCChhhH
Q psy10236 133 LTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMS--HADILLLDCPTVFMDIFDT 210 (515)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~--~p~lLlLDEPtsgLD~~~~ 210 (515)
+.-...+... ..+.+. -..+.+.+..-......|.++++.+..+..++. +|+++++||||+.+|....
T Consensus 69 ~~~~~~~g~~--------~~~~~~--~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~ 138 (234)
T PRK06067 69 LKQMESVKID--------ISDFFL--WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEE 138 (234)
T ss_pred HHHHHHCCCC--------hhHHHh--CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCH
Confidence 2211111100 000000 000011011111223457788999999999987 9999999999976554444
Q ss_pred ---HHHHHHHHHHHhCCCCCCCCcEEEEEeCCCch------HHHhhccEEEEEeC
Q psy10236 211 ---FFLVEFLRGWASGGPAGMAGKMVILTLQPPTY------EIFTMISRVLLVSG 256 (515)
Q Consensus 211 ---~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~------~i~~~~Drv~vL~~ 256 (515)
..+++.++.+++.+ .|+++++|+... .+..++|-++.|+.
T Consensus 139 ~~~~~~l~~l~~l~~~g------~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 139 DDILNFLTEAKNLVDLG------KTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHHHHHhCC------CEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 44444465556555 788888887542 14667787777763
No 455
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.76 E-value=3.2e-08 Score=94.75 Aligned_cols=119 Identities=16% Similarity=0.229 Sum_probs=72.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCC-CeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCc
Q psy10236 69 VLAIMSTSALEGKAILDALAGRNDA-KAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSI 147 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~~~-~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~ 147 (515)
++.|.||+||||||+++.|++...+ ..|.|...+.++.. .......++.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~-~~~~~~~~i~q~~-------------------------- 55 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEF-VHESKRSLINQRE-------------------------- 55 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccc-cccCccceeeecc--------------------------
Confidence 7899999999999999999887764 35666554444311 0001111121110
Q ss_pred hhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCC
Q psy10236 148 KVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAG 227 (515)
Q Consensus 148 ~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~ 227 (515)
.|.. ...++ =+++++|..+|+++++|||. |...... .+ +.+..|
T Consensus 56 --------------vg~~------~~~~~------~~i~~aLr~~pd~ii~gEir---d~e~~~~---~l-~~a~~G--- 99 (198)
T cd01131 56 --------------VGLD------TLSFE------NALKAALRQDPDVILVGEMR---DLETIRL---AL-TAAETG--- 99 (198)
T ss_pred --------------cCCC------ccCHH------HHHHHHhcCCcCEEEEcCCC---CHHHHHH---HH-HHHHcC---
Confidence 0000 00111 14788899999999999996 5544332 23 334445
Q ss_pred CCCcEEEEEeCCCchHHHhhccEEEEEe
Q psy10236 228 MAGKMVILTLQPPTYEIFTMISRVLLVS 255 (515)
Q Consensus 228 ~~~~tiiis~h~~~~~i~~~~Drv~vL~ 255 (515)
..++.|+|.+. ..+.+||++.+.
T Consensus 100 ---~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 100 ---HLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred ---CEEEEEecCCc--HHHHHhHHHhhc
Confidence 78899999864 456789887764
No 456
>PRK02224 chromosome segregation protein; Provisional
Probab=98.75 E-value=2e-08 Score=116.73 Aligned_cols=80 Identities=23% Similarity=0.255 Sum_probs=66.5
Q ss_pred cccCCChHHHH------HHHHHHHHHhC-----C-CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeC
Q psy10236 171 RVGRLTTSELK------RLSIACCLMSH-----A-DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQ 238 (515)
Q Consensus 171 ~v~~LSGGerq------Rv~IA~aL~~~-----p-~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h 238 (515)
.+..||||||+ |+++|++++.+ | +++|+||||++||+.....+.++|+.+...| ..+||+++|
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~-----~~qviiish 852 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLG-----VEQIVVVSH 852 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcC-----CCeEEEEEC
Confidence 35679999999 89999998864 3 6799999999999999999999999997654 247888888
Q ss_pred CCchHHHhhccEEEEEeCC
Q psy10236 239 PPTYEIFTMISRVLLVSGG 257 (515)
Q Consensus 239 ~~~~~i~~~~Drv~vL~~G 257 (515)
++ +....||+++.+...
T Consensus 853 ~~--~~~~~ad~~~~~~~~ 869 (880)
T PRK02224 853 DD--ELVGAADDLVRVEKD 869 (880)
T ss_pred Ch--HHHHhcCeeEEeecC
Confidence 86 455789999999643
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.74 E-value=3.7e-07 Score=79.80 Aligned_cols=117 Identities=21% Similarity=0.164 Sum_probs=75.0
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCCCCCe-eEEEECCeeCChhh-hccceEEEecCCCCCCCCCHHHHHHHHhhcCCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRNDAKA-FQVILNGHSIPLNA-LKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPP 143 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~-G~I~~~G~~~~~~~-~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~ 143 (515)
++..+.|.||+|+||||+++.|+....... +-+.++........ ....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 367899999999999999999999877654 44555443321100 0000
Q ss_pred CCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHH-----HH
Q psy10236 144 KHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEF-----LR 218 (515)
Q Consensus 144 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~-----L~ 218 (515)
............+++..+..++++--.+|.++++||+..-.+.......... ..
T Consensus 51 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~ 109 (148)
T smart00382 51 ---------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLL 109 (148)
T ss_pred ---------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHH
Confidence 0001111223566777777777777777999999999999999888766641 22
Q ss_pred HHHhCCCCCCCCcEEEEEeC
Q psy10236 219 GWASGGPAGMAGKMVILTLQ 238 (515)
Q Consensus 219 ~l~~~g~~~~~~~tiiis~h 238 (515)
...... ...+|++++
T Consensus 110 ~~~~~~-----~~~~i~~~~ 124 (148)
T smart00382 110 LLKSEK-----NLTVILTTN 124 (148)
T ss_pred HHHhcC-----CCEEEEEeC
Confidence 222222 267777777
No 458
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.73 E-value=4.2e-08 Score=96.58 Aligned_cols=137 Identities=18% Similarity=0.190 Sum_probs=80.5
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCC
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHS 146 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 146 (515)
|.+..|+||+|+|||||.--++=-. ..|.= +.|.... .....++.|+.-++.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v--a~G~~-~~g~~~~-~~~~~~Vlyi~~Ed~------------------------ 52 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM--ALGKN-LFGGGLK-VTEPGRVVYLSAEDP------------------------ 52 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH--hcCcc-ccCCccc-cCCCceEEEEECCCC------------------------
Confidence 6788999999999999988775211 11111 1110000 011233555532221
Q ss_pred chhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHH----------------HHHhCCCEEEEeCCCC------C
Q psy10236 147 IKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIAC----------------CLMSHADILLLDCPTV------F 204 (515)
Q Consensus 147 ~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~----------------aL~~~p~lLlLDEPts------g 204 (515)
..+..+++..+...+++.+..++... .+|+.|++.+++ ....+|+++++| |++ .
T Consensus 53 -~~~i~~Rl~~i~~~~~~~~~~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~ 128 (239)
T cd01125 53 -REEIHRRLEAILQHLEPDDAGDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSE 128 (239)
T ss_pred -HHHHHHHHHHHHhhcCCcCcccceEE--eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCc
Confidence 11233445555555554433333322 245555554443 335799999999 765 4
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCC
Q psy10236 205 MDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPP 240 (515)
Q Consensus 205 LD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~ 240 (515)
+|+.....+++.|++++++. +.+|++++|..
T Consensus 129 ~d~~~~~~~~~~L~~~a~~~-----g~avl~v~H~~ 159 (239)
T cd01125 129 NDNGAMDAVIKALRRIAAQT-----GAAILLVHHVR 159 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHh-----CCEEEEEeccC
Confidence 79999999999999998753 37888888864
No 459
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.71 E-value=3.4e-08 Score=93.55 Aligned_cols=84 Identities=12% Similarity=0.012 Sum_probs=61.8
Q ss_pred eeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCC--CCCCCCCHHHHH
Q psy10236 56 FVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQS--FLSPELNVAQTL 133 (515)
Q Consensus 56 iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~--~~~~~lTv~e~l 133 (515)
..+=+.+.+++|+.++|+||||||||||+++|+|+.+++.|.|.+++..-.....+..++++.|.. ...+..++.+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL 93 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence 344456678899999999999999999999999999999999999875321112234456655443 345678888888
Q ss_pred HHHhhc
Q psy10236 134 TFYSHL 139 (515)
Q Consensus 134 ~~~~~~ 139 (515)
....+.
T Consensus 94 ~~~lR~ 99 (186)
T cd01130 94 RSALRM 99 (186)
T ss_pred HHHhcc
Confidence 766543
No 460
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=98.63 E-value=9.2e-09 Score=97.64 Aligned_cols=127 Identities=25% Similarity=0.346 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy10236 344 RQVFALFLRQMAYSQPSSLLNWLSQLLIATILSVIIGCIFWDVPSSDSQLLLNDRFGYHYTIMCLASWPLLIWLSMARCH 423 (515)
Q Consensus 344 ~q~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~f~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 423 (515)
+|++.+++|++....|+........++..++.++++|.+|.++++ ++... ++.|.++......++... .. .....
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~-~~-~~~~~ 75 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGN--SQDGF-NRPGLIFGSIIFSFFSSI-SG-SSISF 75 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccc--ccccc-ccceeeehhhHHhhhhhc-cc-chhhh
Confidence 599999999997554333233267899999999999999999862 22333 445554433332221111 11 11345
Q ss_pred hhhhhHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHhHhhhhhccCCcc
Q psy10236 424 GHDRAAVESDIKDGLYSRAVYIIVMLCCSIPASLIIWLGLVIPAYAMSGLYI 475 (515)
Q Consensus 424 ~~~R~v~~re~~~g~Y~~~~y~la~~l~~lp~~~~~~~~~~~i~Y~m~gl~~ 475 (515)
..+|..+.||+.++.|++.+|.+++.+.+++..++..+++.++.|++.|++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 127 (210)
T PF01061_consen 76 ERERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDF 127 (210)
T ss_pred hhhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhcccc
Confidence 6899999999999999999999999999999999999999999999999976
No 461
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.63 E-value=5e-08 Score=103.20 Aligned_cols=174 Identities=13% Similarity=0.121 Sum_probs=109.2
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCee---EEEECCeeCCh---h------hhccceEEEecC
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAF---QVILNGHSIPL---N------ALKRRLVYVRSQ 120 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G---~I~~~G~~~~~---~------~~~~~i~yv~q~ 120 (515)
+..+++++ +++.+|+.++|+|+||+|||||+++|+|..+++.+ .|-.+|.++.. . ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 45789999 99999999999999999999999999999988764 34444444321 1 124468999999
Q ss_pred CCCCCCCCHHHHHHHHhhcCCCCCCCc--hhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEE
Q psy10236 121 SFLSPELNVAQTLTFYSHLRRPPKHSI--KVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198 (515)
Q Consensus 121 ~~~~~~lTv~e~l~~~~~~~~~~~~~~--~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlL 198 (515)
...+..+++.+++...+.........- -.+.-.+..+...++++ .+
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl--------------------------------~~ 268 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIAL--------------------------------SL 268 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHH--------------------------------hc
Confidence 999999999999988776543211000 00011112222222222 12
Q ss_pred eCC--CCCCChhhHHHHHHHHHHHHhCCCCCCCC-cEEEEEeCCCchHHH-hhccEEEEEeCCeEEEe
Q psy10236 199 DCP--TVFMDIFDTFFLVEFLRGWASGGPAGMAG-KMVILTLQPPTYEIF-TMISRVLLVSGGRTMYS 262 (515)
Q Consensus 199 DEP--tsgLD~~~~~~i~~~L~~l~~~g~~~~~~-~tiiis~h~~~~~i~-~~~Drv~vL~~G~iv~~ 262 (515)
.|| +.|-.+..-..+-+++.+..... ..| .|.+-+..-+.+++. -++|.+.-+-+|+|+.+
T Consensus 269 ge~P~~~Gyp~svf~~l~~l~ERag~~~---~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 269 GEPPATKGYPPSAFSIIPRLAESAGNSS---GNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred CCCCcccCcCHHHHHHhHHHHHHhhcCC---CCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 243 23666666666666666652210 012 355666655554443 35777888889999875
No 462
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.62 E-value=2.9e-09 Score=115.37 Aligned_cols=166 Identities=10% Similarity=0.037 Sum_probs=104.2
Q ss_pred eeeee-EEEEecCeEEEEEcCCCchHHHHHHHH--hCCCCCCeeEEEECCeeCChhhh---ccceEEEecCCCCCCCCCH
Q psy10236 56 FVQGV-SFEVKGSEVLAIMSTSALEGKAILDAL--AGRNDAKAFQVILNGHSIPLNAL---KRRLVYVRSQSFLSPELNV 129 (515)
Q Consensus 56 iL~~v-s~~v~~Gei~aIiG~nGaGKSTLl~~L--~G~~~~~~G~I~~~G~~~~~~~~---~~~i~yv~q~~~~~~~lTv 129 (515)
-|+.+ .+=+.+|.++.|.|++|||||||..-. .|..+..+.-+++..++- ...+ .+..|+-.++..--
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~-~~~l~~~~~~~G~~~~~~~~~----- 82 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES-PQDIIKNARSFGWDLQKLVDE----- 82 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-HHHHHHHHHHcCCCHHHHhhc-----
Confidence 35654 567899999999999999999998866 455444445555554432 2222 22233322211000
Q ss_pred HHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHH--HHHHhCCCEEEEeCCCCCCCh
Q psy10236 130 AQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIA--CCLMSHADILLLDCPTVFMDI 207 (515)
Q Consensus 130 ~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA--~aL~~~p~lLlLDEPtsgLD~ 207 (515)
+++.+ +.... ......+++.+++.+..++.+..+|+|++|||.|+ .++...|+.. .
T Consensus 83 -g~l~~---~~~~~--------~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~ 140 (484)
T TIGR02655 83 -GKLFI---LDASP--------DPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------S 140 (484)
T ss_pred -CceEE---EecCc--------hhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------H
Confidence 00000 00000 00111244566777778888889999999999999 6666665433 4
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchH-------H-HhhccEEEEEe
Q psy10236 208 FDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYE-------I-FTMISRVLLVS 255 (515)
Q Consensus 208 ~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~-------i-~~~~Drv~vL~ 255 (515)
..+..+.++++.+++.| .|+++++|+.... + ..+||.|+.|+
T Consensus 141 ~~r~~l~~Li~~L~~~g------~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 141 VVRREIFRLVARLKQIG------VTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHHHHHCC------CEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 67788999999988766 8899999875320 2 55899999987
No 463
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.60 E-value=1.1e-07 Score=100.80 Aligned_cols=83 Identities=14% Similarity=0.204 Sum_probs=67.8
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECC---eeCCh-------
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNG---HSIPL------- 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G---~~~~~------- 107 (515)
+.++.++++..+. .+..+++.++ .+.+||.++|+|+||+|||||+++|+++.+|+.|.|.+.| +++..
T Consensus 138 ~~~~r~~v~~~l~-TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~ 215 (450)
T PRK06002 138 PAMTRARVETGLR-TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLA 215 (450)
T ss_pred CCeEeecceEEcC-CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHH
Confidence 3689999998875 4567899996 9999999999999999999999999999999999998865 44421
Q ss_pred hhhccceEEEecCCC
Q psy10236 108 NALKRRLVYVRSQSF 122 (515)
Q Consensus 108 ~~~~~~i~yv~q~~~ 122 (515)
...++.+++++|.+.
T Consensus 216 ~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 216 DNLKKAVAVVATSDE 230 (450)
T ss_pred HhhCCeEEEEEcCCC
Confidence 113467999999764
No 464
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.60 E-value=3.4e-08 Score=94.24 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=71.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCch
Q psy10236 69 VLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIK 148 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~ 148 (515)
+++|.||||||||||.+.|++.+ ..|. +.++.+++.. ..++..+...........+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~----------------~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~---- 57 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPK----------------VVIISQDSYY-KDLSHEELEERKNNNYDHPD---- 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCC----------------eEEEEecccc-cccccccHHHhccCCCCCCC----
Confidence 58999999999999999999987 2222 2333333322 22233332221111111111
Q ss_pred hhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCh
Q psy10236 149 VTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207 (515)
Q Consensus 149 ~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~ 207 (515)
....+...+.++.+...+..+.+..+.|.|++++..+ .+.+|+++|+|+|..+.++
T Consensus 58 ~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 58 AFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1112344566777776666777888899999877655 5788999999999998876
No 465
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.55 E-value=1.8e-07 Score=99.58 Aligned_cols=178 Identities=16% Similarity=0.118 Sum_probs=104.6
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-----------hhhccceEEEecCC
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-----------NALKRRLVYVRSQS 121 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-----------~~~~~~i~yv~q~~ 121 (515)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++.|.+...|+.-.. ..+++.+.++.+.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d 228 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD 228 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence 45789999 9999999999999999999999999999999998887776654311 11223344443322
Q ss_pred CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCCh-HHHHHHHHHHHHHhCCCEEEEeC
Q psy10236 122 FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTT-SELKRLSIACCLMSHADILLLDC 200 (515)
Q Consensus 122 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSG-GerqRv~IA~aL~~~p~lLlLDE 200 (515)
. ++.+-..-+. ..-.+.+.+...|-.-. -...+|+- -|-+| ++. +.+.|
T Consensus 229 ~-----~p~~r~~~~~-------------~a~t~AE~frd~G~~Vl--l~~DslTr~A~A~R-----Eis-----l~~ge 278 (440)
T TIGR01026 229 Q-----SPLLRLKGAY-------------VATAIAEYFRDQGKDVL--LLMDSVTRFAMAQR-----EIG-----LAAGE 278 (440)
T ss_pred C-----CHHHHHHHHH-------------HHHHHHHHHHHCCCCEE--EEEeChHHHHHHHH-----HHH-----HhcCC
Confidence 1 1211111000 00011111111121100 00011211 11111 111 22456
Q ss_pred C--CCCCChhhHHHHHHHHHHHHhCCCCCCCCc-----EEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 201 P--TVFMDIFDTFFLVEFLRGWASGGPAGMAGK-----MVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 201 P--tsgLD~~~~~~i~~~L~~l~~~g~~~~~~~-----tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
| +.|+|+.....+.+++.+....+. |. ||++..|+. ...++|++.-+.+|+++.+...++.
T Consensus 279 ~P~~~Gypp~~~~~l~~l~ERag~~~~----GSIT~i~tVl~~~~d~---~dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 279 PPATKGYTPSVFSTLPRLLERAGASGK----GSITAFYTVLVEGDDM---NEPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred CCcccccChhHHHHHHHHHHHhccCCC----CeeeEEEEEEccCcCC---CcchhhhhccccceEEEEecchhhC
Confidence 4 459999999999999999875430 11 444455542 3457899999999999999887654
No 466
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.52 E-value=3.2e-08 Score=96.57 Aligned_cols=47 Identities=6% Similarity=-0.035 Sum_probs=34.7
Q ss_pred eeeee-EEEEecCeEEEEEcCCCchHHHHHHHHh--CCCCCCeeEEEECCe
Q psy10236 56 FVQGV-SFEVKGSEVLAIMSTSALEGKAILDALA--GRNDAKAFQVILNGH 103 (515)
Q Consensus 56 iL~~v-s~~v~~Gei~aIiG~nGaGKSTLl~~L~--G~~~~~~G~I~~~G~ 103 (515)
-|+.+ .+-+++|++++|.|++|+|||||...++ +. .+..+.+++..+
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~~~~~is~e 57 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGDPVIYVTTE 57 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEEcc
Confidence 35553 5678999999999999999999988655 43 344455666654
No 467
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.46 E-value=2.7e-07 Score=96.50 Aligned_cols=57 Identities=28% Similarity=0.293 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHHHHHh---------CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCC
Q psy10236 175 LTTSELKRLSIACCLMS---------HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPP 240 (515)
Q Consensus 175 LSGGerqRv~IA~aL~~---------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~ 240 (515)
+|.||+|++.||..|+. +|+|||||||+++||+..+..+++.|++. | ..+++|+|++
T Consensus 276 ~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~------~qv~it~~~~ 341 (365)
T TIGR00611 276 ASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---G------VQVFVTAISL 341 (365)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---C------CEEEEEecCh
Confidence 89999999999999999 99999999999999999999999999753 3 5788888875
No 468
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.45 E-value=5e-07 Score=105.35 Aligned_cols=80 Identities=23% Similarity=0.183 Sum_probs=69.7
Q ss_pred CcccCCChHHHHHHHHHHHHH------hC--CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCc
Q psy10236 170 TRVGRLTTSELKRLSIACCLM------SH--ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPT 241 (515)
Q Consensus 170 ~~v~~LSGGerqRv~IA~aL~------~~--p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~ 241 (515)
+.+.+|||||+-.++||.+|+ .+ -++|+|||||..||+.....++++|..+...+ ++|+|++|++
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~------~qiiIISH~e- 883 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDG------RQIIIISHVE- 883 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcC------CeEEEEeChH-
Confidence 567889999999988888775 35 69999999999999999999999999998765 7898888874
Q ss_pred hHHHhhccEEEEEeCC
Q psy10236 242 YEIFTMISRVLLVSGG 257 (515)
Q Consensus 242 ~~i~~~~Drv~vL~~G 257 (515)
++.+.+|.++.+...
T Consensus 884 -el~e~~~~~i~V~k~ 898 (908)
T COG0419 884 -ELKERADVRIRVKKD 898 (908)
T ss_pred -HHHHhCCeEEEEEec
Confidence 788999999998643
No 469
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.43 E-value=1.4e-06 Score=100.67 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=46.7
Q ss_pred HHHHHHhCCCEEEEeCCCCCC-ChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHh
Q psy10236 185 IACCLMSHADILLLDCPTVFM-DIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFT 246 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgL-D~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~ 246 (515)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.| .++++++|++. ++.+
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g------~~vil~TQs~~-d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKAN------CLVLMATQSLS-DAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcC------CEEEEEeCCHH-HHhh
Confidence 577788999999999999999 7999999999999998776 68888888764 4443
No 470
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.42 E-value=1.4e-06 Score=90.58 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=74.8
Q ss_pred EecCeEEEEEcCCCchHHHHHHHHhCCCC-CCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCC
Q psy10236 64 VKGSEVLAIMSTSALEGKAILDALAGRND-AKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRP 142 (515)
Q Consensus 64 v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~ 142 (515)
..++.++.|.||+||||||++++|.+.+. +..|.|...+.++... .......+.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~-~~~~~~~i~q~e--------------------- 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV-HRNKRSLINQRE--------------------- 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh-ccCccceEEccc---------------------
Confidence 35788999999999999999999998665 3456665544433110 000011111100
Q ss_pred CCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh
Q psy10236 143 PKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWAS 222 (515)
Q Consensus 143 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~ 222 (515)
.|.. ..+ -.-+++++|-.+|+++++||+. |..+....++ .+.
T Consensus 177 -------------------vg~~--------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~ 218 (343)
T TIGR01420 177 -------------------VGLD--------TLS----FANALRAALREDPDVILIGEMR---DLETVELALT----AAE 218 (343)
T ss_pred -------------------cCCC--------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHH
Confidence 0000 000 1123567788899999999997 8877754443 244
Q ss_pred CCCCCCCCcEEEEEeCCCchHHHhhccEEEEE
Q psy10236 223 GGPAGMAGKMVILTLQPPTYEIFTMISRVLLV 254 (515)
Q Consensus 223 ~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL 254 (515)
.| ..++.|+|..+ .....+|++-|
T Consensus 219 tG------h~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 219 TG------HLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred cC------CcEEEEEcCCC--HHHHHHHHHHh
Confidence 45 78888888753 45666777655
No 471
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.38 E-value=2.4e-07 Score=87.05 Aligned_cols=65 Identities=15% Similarity=0.083 Sum_probs=44.3
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChh-hh-ccceEEEecCCCCCCCCCHHHHHH
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLN-AL-KRRLVYVRSQSFLSPELNVAQTLT 134 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~-~~-~~~i~yv~q~~~~~~~lTv~e~l~ 134 (515)
+||+++|+|+||||||||+++|+|++.+ +.++|.++... .. +...++.+|+....+..++.+++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 6999999999999999999999999876 57888776322 11 123445555443334444444444
No 472
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.30 E-value=1.8e-06 Score=99.46 Aligned_cols=139 Identities=12% Similarity=0.090 Sum_probs=81.0
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHH
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTL 133 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l 133 (515)
..|=+|+++. ..+.++.|.|||++||||+||.++-..- ..+.-.|||-+.. .+++.+.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i-----------------lAq~G~~VPa~~a---~i~~~d~- 652 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL-----------------LAQIGSFVPAESA---RIGIVDR- 652 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH-----------------HHhcCCceeccce---EecccCe-
Confidence 3567888888 6778999999999999999999864310 0111112221110 0011110
Q ss_pred HHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH--hCCCEEEEeCC---CCCCChh
Q psy10236 134 TFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM--SHADILLLDCP---TVFMDIF 208 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~--~~p~lLlLDEP---tsgLD~~ 208 (515)
+..++|- .|.....+|-=+.....++..|- ++++++|+||| |+.+|..
T Consensus 653 ------------------------I~triga---~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~ 705 (854)
T PRK05399 653 ------------------------IFTRIGA---SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL 705 (854)
T ss_pred ------------------------eeeccCc---ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH
Confidence 1111111 12222345555555555555554 48999999999 8888844
Q ss_pred hHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccE
Q psy10236 209 DTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISR 250 (515)
Q Consensus 209 ~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Dr 250 (515)
+ ....+++.+.+.+ +.++++++|. .++.+++++
T Consensus 706 a--ia~aile~l~~~~-----~~~~l~aTH~--~el~~l~~~ 738 (854)
T PRK05399 706 S--IAWAVAEYLHDKI-----GAKTLFATHY--HELTELEEK 738 (854)
T ss_pred H--HHHHHHHHHHhcC-----CceEEEEech--HHHHHHhhh
Confidence 4 4555666666542 2567778886 367777775
No 473
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.28 E-value=1e-06 Score=106.06 Aligned_cols=63 Identities=21% Similarity=0.174 Sum_probs=53.1
Q ss_pred ccCcccCCChHHHHHHH----HHHH--------HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEE
Q psy10236 168 LSTRVGRLTTSELKRLS----IACC--------LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVIL 235 (515)
Q Consensus 168 ~~~~v~~LSGGerqRv~----IA~a--------L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiii 235 (515)
.+++++.||||||||+. +|++ +..+|++++|||||+|||+.++..+++++.++ + .++|+
T Consensus 1241 ~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~------~~~i~ 1311 (1353)
T TIGR02680 1241 LTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---D------LDFVM 1311 (1353)
T ss_pred hhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---C------CCEEE
Confidence 34556789999999996 5655 45899999999999999999999999999988 2 56788
Q ss_pred EeCC
Q psy10236 236 TLQP 239 (515)
Q Consensus 236 s~h~ 239 (515)
+++.
T Consensus 1312 ~s~~ 1315 (1353)
T TIGR02680 1312 TSER 1315 (1353)
T ss_pred Eccc
Confidence 8775
No 474
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.28 E-value=1.7e-05 Score=91.32 Aligned_cols=47 Identities=9% Similarity=0.105 Sum_probs=39.5
Q ss_pred eeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeC
Q psy10236 59 GVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI 105 (515)
Q Consensus 59 ~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~ 105 (515)
.+|+.+.++..++|+|++|||||||++.|++......++|.+-+..-
T Consensus 438 ~~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D~~~ 484 (800)
T PRK13898 438 YFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDKDR 484 (800)
T ss_pred EEEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeCCCc
Confidence 34677788889999999999999999999998877778887776554
No 475
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.27 E-value=3.6e-06 Score=76.38 Aligned_cols=64 Identities=22% Similarity=0.181 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHHHHH-----hCCCEEEEeCCCCCCChhhHHHHHHHHHHH
Q psy10236 153 EQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLM-----SHADILLLDCPTVFMDIFDTFFLVEFLRGW 220 (515)
Q Consensus 153 ~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~aL~-----~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l 220 (515)
..+.+++...+.. -...+++..++++++++........ ..++++ |+|++|.....++.+.|.++
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3455666666643 2244556678999988876665532 345555 99999999999999988764
No 476
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.25 E-value=1.9e-05 Score=79.07 Aligned_cols=39 Identities=8% Similarity=0.077 Sum_probs=34.1
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
+...|+++.+-+.+|+++.|.|++|+|||||+..++...
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345799998999999999999999999999999887643
No 477
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.25 E-value=2.2e-06 Score=91.10 Aligned_cols=171 Identities=13% Similarity=0.178 Sum_probs=99.5
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-CeeEEEECC---eeCCh---hhhc---cceEEE-----
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-KAFQVILNG---HSIPL---NALK---RRLVYV----- 117 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-~~G~I~~~G---~~~~~---~~~~---~~i~yv----- 117 (515)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..+. +.|.|.+.| +++.. ..++ .+.+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 45689998 99999999999999999999999999998854 447777755 44421 1111 223444
Q ss_pred ecCCC--CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-----ccccCcccCCChHHHHHHHHHHHHH
Q psy10236 118 RSQSF--LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-----QVLSTRVGRLTTSELKRLSIACCLM 190 (515)
Q Consensus 118 ~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-----~~~~~~v~~LSGGerqRv~IA~aL~ 190 (515)
+|++. +.|.+ +...+.-+.+.+.. ......+...++.+++++++|. .....+++.+|
T Consensus 230 ~q~p~~rlnp~~-va~~IAE~~r~~g~-~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS-------------- 293 (442)
T PRK06315 230 DQSSQLRLNAAY-VGTAIAEYFRDQGK-TVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS-------------- 293 (442)
T ss_pred CCCHHHHhhHHH-HHHHHHHHHHHcCC-CcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh--------------
Confidence 66542 33333 44444333332221 1111234567788899999883 33344444333
Q ss_pred hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCC-cEEEEEeCCCchHH-HhhccEEEEEeCCeEEEecCc
Q psy10236 191 SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAG-KMVILTLQPPTYEI-FTMISRVLLVSGGRTMYSGKR 265 (515)
Q Consensus 191 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~-~tiiis~h~~~~~i-~~~~Drv~vL~~G~iv~~G~~ 265 (515)
.+-+++.+....+ .| .|.+-+...+.+++ .-++|.+.-+-+|+++.+-..
T Consensus 294 ---------------------~l~~llERag~~~----~GSITai~tVl~~gdD~~dpi~d~~~~i~dg~ivLsr~l 345 (442)
T PRK06315 294 ---------------------TLPKLLERSGASD----KGTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNAL 345 (442)
T ss_pred ---------------------HhHHHHHHhcCCC----CcceeeeEEEEecCCCCCcccHHHhhhhcceEEEEeccH
Confidence 2333333322111 12 35455544444333 235788888889999986543
No 478
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.23 E-value=3.5e-06 Score=100.72 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=36.9
Q ss_pred eEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-CCeeEEEECCe
Q psy10236 60 VSFEVKGSEVLAIMSTSALEGKAILDALAGRND-AKAFQVILNGH 103 (515)
Q Consensus 60 vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-~~~G~I~~~G~ 103 (515)
+++....+++++|+|++|+|||||++++++... ..+|.+.+++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 467778899999999999999999999977654 45788888763
No 479
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.23 E-value=2.7e-06 Score=94.81 Aligned_cols=110 Identities=10% Similarity=0.045 Sum_probs=75.5
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCCCCCee--------EEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHh
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRNDAKAF--------QVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYS 137 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G--------~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~ 137 (515)
..+.++|+||||+|||||+++|.+..++..| -+.++|..+... .+. + .+-.+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d-~~~----------------i-~~~llg- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWD-PRE----------------V-TNPLLG- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCC-HHH----------------H-hHHhcC-
Confidence 3457999999999999999999998764433 356665443100 000 0 011111
Q ss_pred hcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHH
Q psy10236 138 HLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFL 217 (515)
Q Consensus 138 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L 217 (515)
.. .....+.+.+.++..|+.+..+..+.++||| +|++|| +..||...+..+.+.|
T Consensus 235 ---~~-----~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~L 289 (615)
T TIGR02903 235 ---SV-----HDPIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVL 289 (615)
T ss_pred ---Cc-----cHHHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHH
Confidence 00 0111223455688899988888899999999 999999 7999999999999999
Q ss_pred HH
Q psy10236 218 RG 219 (515)
Q Consensus 218 ~~ 219 (515)
++
T Consensus 290 e~ 291 (615)
T TIGR02903 290 ED 291 (615)
T ss_pred hh
Confidence 75
No 480
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.22 E-value=2e-06 Score=89.61 Aligned_cols=71 Identities=10% Similarity=0.052 Sum_probs=45.1
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCCC--C-eeEEEECCeeCC--hhhhccceEEEecCCCCCCCCCHHHHHHH
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRNDA--K-AFQVILNGHSIP--LNALKRRLVYVRSQSFLSPELNVAQTLTF 135 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~~--~-~G~I~~~G~~~~--~~~~~~~i~yv~q~~~~~~~lTv~e~l~~ 135 (515)
++|.+++|.||+||||||+|++|++.+.+ . .+.|.....++. ....+...+.+.|...--...+..+.+.-
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRN 207 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHH
Confidence 58899999999999999999999998743 2 345655554442 12233345677775431112344555543
No 481
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.19 E-value=1.9e-05 Score=74.45 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCc-ccccCcccCCChHHHHHHH--HHHHHHh-CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC
Q psy10236 154 QMGLLIEELGLT-QVLSTRVGRLTTSELKRLS--IACCLMS-HADILLLDCPTVFMDIFDTFFLVEFLRGWASG 223 (515)
Q Consensus 154 ~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~--IA~aL~~-~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~ 223 (515)
.+.++++..++. -..-+++..+|+|++|++. +++.+-. ++++ .|+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 445566666764 3455677779999999987 5555543 3343 399999999999999999987654
No 482
>PRK08149 ATP synthase SpaL; Validated
Probab=98.19 E-value=3.4e-06 Score=89.27 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=56.1
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCe---eEEEECCeeCCh---hh----hccceEEEecCC
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKA---FQVILNGHSIPL---NA----LKRRLVYVRSQS 121 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~---G~I~~~G~~~~~---~~----~~~~i~yv~q~~ 121 (515)
+..+++++ +.+.+||.++|+|+||+|||||+++|++...++. |.|-.+|+++.. .. ..+++++|....
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 45789999 9999999999999999999999999999998876 899999988732 11 235677776543
No 483
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.17 E-value=2.1e-06 Score=66.01 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=30.5
Q ss_pred eeeeEEEEec-CeEEEEEcCCCchHHHHHHHHhCCCCCC
Q psy10236 57 VQGVSFEVKG-SEVLAIMSTSALEGKAILDALAGRNDAK 94 (515)
Q Consensus 57 L~~vs~~v~~-Gei~aIiG~nGaGKSTLl~~L~G~~~~~ 94 (515)
.++-++++.+ |+++.|.|+||||||||+++|.=.+-+.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4556777775 5799999999999999999997665443
No 484
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.17 E-value=3.8e-06 Score=70.00 Aligned_cols=51 Identities=25% Similarity=0.271 Sum_probs=39.6
Q ss_pred cCcccCCChHHHH-HHHHHHHHH------h------CCCEEEEeCCCCCCChhhHHHHHHHHHH
Q psy10236 169 STRVGRLTTSELK-RLSIACCLM------S------HADILLLDCPTVFMDIFDTFFLVEFLRG 219 (515)
Q Consensus 169 ~~~v~~LSGGerq-Rv~IA~aL~------~------~p~lLlLDEPtsgLD~~~~~~i~~~L~~ 219 (515)
.+..+.+|||||| .+.+|.+++ . .|.+++||||+++||......++++|++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 5677889999994 444444332 2 3799999999999999999999999874
No 485
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.14 E-value=2.8e-06 Score=83.18 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=51.0
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeE----EEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRNDAKAFQ----VILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLR 140 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~----I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~ 140 (515)
.+..++||.||||||||||.+.|++++++.+|. |.+++...+.. .....+++.+.. ....+++.+.+.+...++
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~-~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l~ 108 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNA-VLDAHGLRPRKG-APETFDVAGLAALLRRLR 108 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHH-HHHhcccccccC-CCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999999999999998 55555433322 233456665432 335567776665554443
No 486
>PRK01889 GTPase RsgA; Reviewed
Probab=98.14 E-value=3e-06 Score=88.35 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=55.0
Q ss_pred eeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCC
Q psy10236 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSP 125 (515)
Q Consensus 57 L~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~ 125 (515)
++.+.-.+++|++++|+|+||+|||||+++|+|...+..|+|.+++.........+.+.+++|...++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~D 253 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLID 253 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecC
Confidence 455555678999999999999999999999999999999999998754322234567888888765554
No 487
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.12 E-value=1.9e-06 Score=87.04 Aligned_cols=72 Identities=13% Similarity=0.138 Sum_probs=52.0
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCCCC--CCeeEEEECCeeC---ChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcC
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGRND--AKAFQVILNGHSI---PLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLR 140 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~~~--~~~G~I~~~G~~~---~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~ 140 (515)
=.++||.||||||||||+++|.+++. |.+|+|.+-+.+- +.. .++..++. |...+.+.+++.+.+.+...++
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~-~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQ-VLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHH-HHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 36999999999999999999999987 6778876644432 222 22334544 5666777888888887766554
No 488
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.12 E-value=2.9e-06 Score=80.21 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=32.0
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP 106 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~ 106 (515)
|++++|+||||||||||+++|++...+ .+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECC
Confidence 789999999999999999999998765 5777777654
No 489
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.09 E-value=4.5e-05 Score=88.01 Aligned_cols=46 Identities=24% Similarity=0.257 Sum_probs=39.6
Q ss_pred HhCCCEEEEeCCCCCCC-hhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCc
Q psy10236 190 MSHADILLLDCPTVFMD-IFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPT 241 (515)
Q Consensus 190 ~~~p~lLlLDEPtsgLD-~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~ 241 (515)
-.+|+++++|||+.+|| +..+..+.+.++.+++.| .++++++|.+.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~------~~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKN------VSVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcC------CEEEEEECCHH
Confidence 45899999999999999 678999999999998776 67888888764
No 490
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.09 E-value=4.8e-06 Score=85.31 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=46.9
Q ss_pred CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCee
Q psy10236 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHS 104 (515)
Q Consensus 52 ~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~ 104 (515)
.+..+++++ +.+.+||.++|+|+||+|||||+++|+|...++.|.+..-|+.
T Consensus 55 tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 55 TGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred CCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 346789999 9999999999999999999999999999999998888776643
No 491
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.08 E-value=3.6e-06 Score=89.22 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=54.7
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCee
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHS 104 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~ 104 (515)
.++.++++..+. .+..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++.|.+.+.|+.
T Consensus 129 ~~~r~~v~~~l~-tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLM-TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeC-CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 456666665543 456799999 9999999999999999999999999999999999988887764
No 492
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.07 E-value=2.9e-06 Score=87.00 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=55.8
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---------hhhccceEEEecCCCCCCCCCHHHHHHH
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---------NALKRRLVYVRSQSFLSPELNVAQTLTF 135 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---------~~~~~~i~yv~q~~~~~~~lTv~e~l~~ 135 (515)
.+|++++++||||+||||++..|++.+.+..++|.+.+.+... ...+..+.+++|.....|..++.+++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 5799999999999999999999999998888899988876521 1234568888886666666666777654
Q ss_pred H
Q psy10236 136 Y 136 (515)
Q Consensus 136 ~ 136 (515)
.
T Consensus 192 ~ 192 (318)
T PRK10416 192 A 192 (318)
T ss_pred H
Confidence 3
No 493
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.04 E-value=1.2e-05 Score=86.51 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=35.9
Q ss_pred eeee-EEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeE-EEECCee
Q psy10236 57 VQGV-SFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQ-VILNGHS 104 (515)
Q Consensus 57 L~~v-s~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~-I~~~G~~ 104 (515)
|+.+ .+=+.+|+++.|.|++|+|||||+..++.......+. +++.+++
T Consensus 83 LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 83 LDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred HHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 5554 4679999999999999999999999988765443333 3555543
No 494
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.03 E-value=1.8e-06 Score=83.16 Aligned_cols=29 Identities=7% Similarity=0.012 Sum_probs=26.8
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRNDA 93 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~~ 93 (515)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999998764
No 495
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.01 E-value=4.3e-06 Score=90.45 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=55.0
Q ss_pred EEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeC
Q psy10236 42 VRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI 105 (515)
Q Consensus 42 v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~ 105 (515)
.+|++..+ ++..+++++++.+..|+.++|+||||+|||||++.|.|+++|.+|++.+++..+
T Consensus 187 ~~d~~~v~--Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVI--GQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEE--CcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 34666554 566789999999999999999999999999999999999999999999988765
No 496
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.00 E-value=1.9e-05 Score=69.52 Aligned_cols=59 Identities=17% Similarity=0.081 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCC
Q psy10236 180 LKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPP 240 (515)
Q Consensus 180 rqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~ 240 (515)
.+..........++.++++||.-.. +......+.+.+....... ....+..+|++++.+
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~-~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLR-IDRENVRVIGATNRP 130 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCcee-ccCCCeEEEEecCcc
Confidence 5555666677788999999998765 5566677777777764310 000135677776654
No 497
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.99 E-value=8.3e-06 Score=86.73 Aligned_cols=53 Identities=11% Similarity=0.223 Sum_probs=48.4
Q ss_pred CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeC
Q psy10236 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI 105 (515)
Q Consensus 52 ~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~ 105 (515)
.+..+++++ +.+.+|+.++|+|+||+|||||+++|+|...++.|.|.+.|+.-
T Consensus 149 TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~ 201 (441)
T PRK09099 149 TGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERG 201 (441)
T ss_pred CCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccCh
Confidence 346689999 99999999999999999999999999999999999999988643
No 498
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.96 E-value=5e-06 Score=79.57 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=26.3
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
++|++++|+||||||||||++.|++..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
No 499
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.96 E-value=3e-05 Score=81.18 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=34.9
Q ss_pred eeee-EEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEE-EECCe
Q psy10236 57 VQGV-SFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQV-ILNGH 103 (515)
Q Consensus 57 L~~v-s~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I-~~~G~ 103 (515)
|+.+ .+=+.+|+++.|.|++|+|||||+..++.......+.+ ++.++
T Consensus 71 LD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 71 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred HHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 4443 35689999999999999999999999987665443444 33443
No 500
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.94 E-value=1.7e-05 Score=82.79 Aligned_cols=54 Identities=7% Similarity=0.032 Sum_probs=48.0
Q ss_pred CeEEEEeeEEeCCCCCcceee-----------eeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQ-----------GVSFEVKGSEVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~-----------~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
..+.++||++.|+ +.+.+|+ |+++.+.+|+.++|+||+|+|||||++.|+..+.
T Consensus 129 ~ri~Fe~LTf~YP-~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 129 NRVLFENLTPLYP-NERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCeEEEEeeecCC-CccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 3699999999986 3456897 9999999999999999999999999999998754
Done!