Query psy10236
Match_columns 515
No_of_seqs 427 out of 2682
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 21:22:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 8.6E-52 2.9E-56 426.2 28.6 223 36-269 21-252 (366)
2 2olj_A Amino acid ABC transpor 100.0 4.5E-51 1.5E-55 405.6 29.9 219 38-269 23-247 (263)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 1.6E-51 5.4E-56 423.9 27.5 221 38-270 3-228 (359)
4 3gfo_A Cobalt import ATP-bindi 100.0 3.3E-51 1.1E-55 409.0 27.6 221 38-270 6-233 (275)
5 3rlf_A Maltose/maltodextrin im 100.0 4.7E-51 1.6E-55 423.1 29.3 219 39-270 3-223 (381)
6 1b0u_A Histidine permease; ABC 100.0 6E-51 2.1E-55 404.9 28.9 219 38-269 5-241 (262)
7 4g1u_C Hemin import ATP-bindin 100.0 9.1E-51 3.1E-55 404.3 27.9 218 38-269 10-236 (266)
8 2pcj_A ABC transporter, lipopr 100.0 1.3E-50 4.4E-55 393.5 27.9 214 38-265 3-223 (224)
9 3tif_A Uncharacterized ABC tra 100.0 1.2E-50 4E-55 396.5 27.3 221 39-268 1-232 (235)
10 1vpl_A ABC transporter, ATP-bi 100.0 1.8E-50 6E-55 399.9 28.6 221 37-270 13-235 (256)
11 1g6h_A High-affinity branched- 100.0 1.5E-50 5E-55 401.1 25.5 221 38-267 6-239 (257)
12 1z47_A CYSA, putative ABC-tran 100.0 4.2E-50 1.4E-54 413.3 29.4 220 38-269 13-234 (355)
13 1ji0_A ABC transporter; ATP bi 100.0 3.7E-50 1.2E-54 394.3 26.4 219 37-269 4-227 (240)
14 2it1_A 362AA long hypothetical 100.0 6.4E-50 2.2E-54 413.3 29.3 219 39-270 3-223 (362)
15 2yyz_A Sugar ABC transporter, 100.0 4.8E-50 1.6E-54 413.8 27.5 219 39-270 3-223 (359)
16 1g29_1 MALK, maltose transport 100.0 9E-50 3.1E-54 414.2 29.2 219 39-270 3-229 (372)
17 1oxx_K GLCV, glucose, ABC tran 100.0 5.2E-50 1.8E-54 413.4 27.1 218 39-269 3-229 (353)
18 1v43_A Sugar-binding transport 100.0 1E-49 3.5E-54 413.2 27.4 219 39-270 11-231 (372)
19 3d31_A Sulfate/molybdate ABC t 100.0 1.7E-49 6E-54 408.3 26.6 215 39-269 1-216 (348)
20 2yz2_A Putative ABC transporte 100.0 4.6E-49 1.6E-53 392.2 26.4 220 39-270 2-227 (266)
21 2onk_A Molybdate/tungstate ABC 100.0 2.9E-49 1E-53 387.7 24.0 213 39-269 1-215 (240)
22 2ihy_A ABC transporter, ATP-bi 100.0 2.3E-49 7.8E-54 396.7 22.5 223 38-269 20-251 (279)
23 2nq2_C Hypothetical ABC transp 100.0 1.7E-47 5.7E-52 378.1 27.7 212 38-268 3-215 (253)
24 2zu0_C Probable ATP-dependent 100.0 1.4E-47 4.7E-52 381.7 26.5 225 36-270 17-254 (267)
25 2d2e_A SUFC protein; ABC-ATPas 100.0 5.6E-48 1.9E-52 381.0 23.3 217 39-266 3-229 (250)
26 2qi9_C Vitamin B12 import ATP- 100.0 1.8E-47 6.2E-52 376.9 25.0 208 38-268 3-220 (249)
27 2ixe_A Antigen peptide transpo 100.0 8.6E-48 2.9E-52 383.9 22.4 224 38-269 15-244 (271)
28 2ff7_A Alpha-hemolysin translo 100.0 2.8E-47 9.4E-52 375.3 23.9 211 39-269 7-231 (247)
29 3nh6_A ATP-binding cassette SU 100.0 1.5E-46 5.1E-51 380.2 26.2 212 38-270 52-277 (306)
30 1sgw_A Putative ABC transporte 100.0 6.1E-47 2.1E-51 364.8 20.1 202 38-259 9-210 (214)
31 1mv5_A LMRA, multidrug resista 100.0 4.8E-47 1.7E-51 372.8 19.5 211 39-269 1-225 (243)
32 2pjz_A Hypothetical protein ST 100.0 5.8E-46 2E-50 368.9 21.8 208 39-270 1-215 (263)
33 2ghi_A Transport protein; mult 100.0 1.3E-45 4.5E-50 366.0 23.9 211 38-269 16-241 (260)
34 3gd7_A Fusion complex of cysti 100.0 5.9E-46 2E-50 387.3 18.0 211 38-270 18-242 (390)
35 2pze_A Cystic fibrosis transme 100.0 5.8E-45 2E-49 354.9 21.8 201 38-269 5-217 (229)
36 2cbz_A Multidrug resistance-as 100.0 1.1E-44 3.6E-49 354.8 20.6 203 39-269 3-216 (237)
37 4a82_A Cystic fibrosis transme 100.0 2.8E-43 9.6E-48 386.7 24.5 213 38-270 338-564 (578)
38 3b5x_A Lipid A export ATP-bind 100.0 3.3E-43 1.1E-47 386.5 24.9 214 37-269 339-566 (582)
39 3b60_A Lipid A export ATP-bind 100.0 2.4E-43 8.2E-48 387.6 23.8 214 38-270 340-567 (582)
40 2yl4_A ATP-binding cassette SU 100.0 6.2E-43 2.1E-47 385.3 26.7 215 38-269 339-569 (595)
41 3qf4_A ABC transporter, ATP-bi 100.0 2.8E-43 9.6E-48 387.1 22.5 218 37-270 339-566 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 1.8E-42 6.3E-47 381.5 22.5 212 38-270 353-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 5.6E-42 1.9E-46 344.7 17.5 197 37-269 38-246 (290)
44 4f4c_A Multidrug resistance pr 100.0 3.3E-40 1.1E-44 391.4 21.1 215 38-270 1075-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 5.6E-39 1.9E-43 380.9 25.8 213 38-270 414-641 (1321)
46 3bk7_A ABC transporter ATP-bin 100.0 9.8E-39 3.4E-43 350.9 23.4 206 37-270 355-563 (607)
47 1yqt_A RNAse L inhibitor; ATP- 100.0 1E-38 3.6E-43 346.9 21.5 206 37-270 285-493 (538)
48 3g5u_A MCG1178, multidrug resi 100.0 2E-38 6.9E-43 375.2 25.1 217 38-270 386-613 (1284)
49 3ozx_A RNAse L inhibitor; ATP 100.0 2.4E-38 8.3E-43 343.4 21.5 208 37-269 267-476 (538)
50 3g5u_A MCG1178, multidrug resi 100.0 2.3E-38 7.9E-43 374.7 22.5 215 38-270 1029-1258(1284)
51 3j16_B RLI1P; ribosome recycli 100.0 9.6E-37 3.3E-41 334.6 19.1 202 43-270 350-559 (608)
52 3bk7_A ABC transporter ATP-bin 100.0 3.8E-37 1.3E-41 338.3 13.5 198 38-258 82-305 (607)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 8.2E-37 2.8E-41 332.0 12.8 195 41-258 22-235 (538)
54 2iw3_A Elongation factor 3A; a 100.0 6.3E-36 2.2E-40 339.9 19.2 210 37-264 669-981 (986)
55 3ux8_A Excinuclease ABC, A sub 100.0 8.7E-36 3E-40 332.6 16.0 208 53-269 30-297 (670)
56 2iw3_A Elongation factor 3A; a 100.0 1.1E-34 3.6E-39 329.9 24.3 199 38-270 434-635 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.8E-33 6.2E-38 313.9 18.3 197 54-269 335-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 7.4E-34 2.5E-38 311.8 12.7 204 38-261 68-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 1.1E-33 3.9E-38 306.8 8.8 176 64-260 22-216 (538)
60 2vf7_A UVRA2, excinuclease ABC 100.0 7.5E-32 2.6E-36 303.8 18.1 208 37-269 500-826 (842)
61 2r6f_A Excinuclease ABC subuni 100.0 1.8E-31 6.1E-36 301.3 17.7 207 38-269 628-941 (972)
62 3pih_A Uvrabc system protein A 100.0 5.4E-31 1.8E-35 299.1 18.3 207 38-269 588-901 (916)
63 2ygr_A Uvrabc system protein A 100.0 7.1E-31 2.4E-35 297.4 17.0 208 38-270 646-960 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 3.8E-34 1.3E-38 304.8 -15.1 198 37-268 116-336 (460)
65 4aby_A DNA repair protein RECN 100.0 3.5E-29 1.2E-33 263.4 18.7 198 55-263 49-381 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 3.1E-26 1.1E-30 237.6 15.9 85 169-261 274-364 (365)
67 1e69_A Chromosome segregation 99.9 5.1E-26 1.8E-30 232.0 12.5 200 58-267 16-310 (322)
68 3b85_A Phosphate starvation-in 99.9 3.8E-29 1.3E-33 239.7 -11.5 141 52-240 11-158 (208)
69 1tq4_A IIGP1, interferon-induc 99.9 2.4E-27 8.1E-32 248.6 -6.8 174 54-251 36-247 (413)
70 1ye8_A Protein THEP1, hypothet 99.9 1.2E-25 4.2E-30 210.1 3.4 146 69-261 2-159 (178)
71 4gp7_A Metallophosphoesterase; 99.9 1.5E-25 5.2E-30 207.8 2.9 143 59-240 1-159 (171)
72 3b9q_A Chloroplast SRP recepto 99.9 3.5E-25 1.2E-29 223.8 0.1 174 57-259 90-284 (302)
73 1znw_A Guanylate kinase, GMP k 99.9 1.5E-27 5.3E-32 227.7 -16.6 183 53-255 8-202 (207)
74 2v9p_A Replication protein E1; 99.9 8.4E-28 2.9E-32 242.4 -21.1 169 39-274 101-270 (305)
75 3sop_A Neuronal-specific septi 99.9 2.8E-25 9.5E-30 221.1 -6.4 146 69-239 4-149 (270)
76 2dpy_A FLII, flagellum-specifi 99.9 1.3E-25 4.6E-30 237.7 -10.7 197 38-269 130-343 (438)
77 2og2_A Putative signal recogni 99.9 5.1E-24 1.7E-28 219.6 0.6 173 58-259 148-341 (359)
78 1z6g_A Guanylate kinase; struc 99.9 8.4E-26 2.9E-30 217.8 -19.1 155 55-222 11-175 (218)
79 2pt7_A CAG-ALFA; ATPase, prote 99.8 4.2E-23 1.5E-27 211.1 -0.6 132 56-259 160-292 (330)
80 1cr0_A DNA primase/helicase; R 99.8 2E-22 6.9E-27 202.5 4.2 186 53-259 21-237 (296)
81 3aez_A Pantothenate kinase; tr 99.8 1E-24 3.5E-29 221.3 -13.3 145 38-207 42-209 (312)
82 2o5v_A DNA replication and rep 99.8 1.6E-20 5.6E-25 193.7 17.5 86 169-268 259-354 (359)
83 3pih_A Uvrabc system protein A 99.8 2.3E-21 7.9E-26 220.3 11.3 164 82-269 383-559 (916)
84 2obl_A ESCN; ATPase, hydrolase 99.8 4.9E-23 1.7E-27 211.9 -2.9 192 38-268 44-253 (347)
85 3qkt_A DNA double-strand break 99.8 6.5E-21 2.2E-25 195.6 10.9 80 168-255 242-327 (339)
86 4ad8_A DNA repair protein RECN 99.8 1.4E-20 4.8E-25 203.8 12.9 79 170-257 392-473 (517)
87 2jeo_A Uridine-cytidine kinase 99.8 2.3E-22 7.9E-27 196.8 -1.4 170 52-258 10-180 (245)
88 1tf7_A KAIC; homohexamer, hexa 99.8 1.5E-23 5E-28 227.6 -12.7 182 39-258 12-211 (525)
89 2o8b_B DNA mismatch repair pro 99.8 2.5E-21 8.6E-26 223.3 2.4 174 37-266 748-938 (1022)
90 1tf7_A KAIC; homohexamer, hexa 99.8 2.5E-20 8.6E-25 202.1 9.9 156 61-258 275-444 (525)
91 2vf7_A UVRA2, excinuclease ABC 99.8 7.1E-20 2.4E-24 206.5 11.4 171 75-270 270-475 (842)
92 2r6f_A Excinuclease ABC subuni 99.8 3.8E-19 1.3E-23 201.1 16.3 136 125-269 450-599 (972)
93 2ehv_A Hypothetical protein PH 99.8 2.5E-20 8.4E-25 181.3 1.5 181 39-255 6-206 (251)
94 3thx_A DNA mismatch repair pro 99.8 3.4E-19 1.2E-23 203.4 10.5 169 38-269 630-812 (934)
95 2ygr_A Uvrabc system protein A 99.8 6.9E-19 2.4E-23 199.7 12.0 138 124-270 466-617 (993)
96 2eyu_A Twitching motility prot 99.8 2E-20 6.8E-25 185.2 -1.1 142 39-256 5-147 (261)
97 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 1.4E-18 4.7E-23 157.3 10.2 83 168-258 51-141 (148)
98 2qnr_A Septin-2, protein NEDD5 99.8 4.1E-21 1.4E-25 194.0 -7.5 164 43-240 2-167 (301)
99 1w1w_A Structural maintenance 99.8 3.7E-18 1.3E-22 180.5 14.5 78 170-255 329-410 (430)
100 3asz_A Uridine kinase; cytidin 99.7 4.8E-21 1.6E-25 182.4 -9.7 144 64-239 3-160 (211)
101 4a74_A DNA repair and recombin 99.7 1.8E-19 6.2E-24 172.9 0.8 158 56-258 13-201 (231)
102 1rj9_A FTSY, signal recognitio 99.7 1.2E-19 4.1E-24 183.3 -0.7 148 66-240 101-258 (304)
103 3thx_B DNA mismatch repair pro 99.7 7.9E-19 2.7E-23 199.8 5.8 160 39-251 640-805 (918)
104 1ewq_A DNA mismatch repair pro 99.7 6.5E-19 2.2E-23 197.6 1.9 163 37-264 548-718 (765)
105 3szr_A Interferon-induced GTP- 99.7 4.2E-20 1.4E-24 203.5 -8.2 195 39-271 10-238 (608)
106 1pui_A ENGB, probable GTP-bind 99.7 1.2E-19 4.1E-24 171.8 -4.6 175 39-224 3-200 (210)
107 2w0m_A SSO2452; RECA, SSPF, un 99.7 4.1E-18 1.4E-22 163.3 3.6 170 53-257 8-192 (235)
108 1pzn_A RAD51, DNA repair and r 99.7 6.2E-19 2.1E-23 181.6 -3.1 168 55-267 118-312 (349)
109 2i3b_A HCR-ntpase, human cance 99.7 6.6E-20 2.3E-24 172.8 -11.2 158 67-263 1-169 (189)
110 1nlf_A Regulatory protein REPA 99.7 8.8E-17 3E-21 160.1 10.8 150 63-240 26-181 (279)
111 1wb9_A DNA mismatch repair pro 99.7 6.1E-18 2.1E-22 190.8 2.4 174 39-268 577-756 (800)
112 3jvv_A Twitching mobility prot 99.6 2E-17 6.8E-22 170.5 1.1 127 63-257 119-246 (356)
113 2qag_C Septin-7; cell cycle, c 99.6 8.7E-18 3E-22 176.5 -2.0 151 38-222 10-166 (418)
114 1zp6_A Hypothetical protein AT 99.6 1.7E-18 6E-23 161.8 -10.6 141 63-221 5-148 (191)
115 2bdt_A BH3686; alpha-beta prot 99.6 1.4E-19 4.9E-24 169.3 -18.8 173 67-268 2-182 (189)
116 3kta_B Chromosome segregation 99.6 3E-15 1E-19 138.8 10.6 82 168-258 58-145 (173)
117 2bbw_A Adenylate kinase 4, AK4 99.6 7.2E-18 2.5E-22 164.8 -8.0 144 66-223 26-199 (246)
118 1lw7_A Transcriptional regulat 99.6 3.9E-19 1.3E-23 184.1 -19.7 174 56-268 157-353 (365)
119 2cvh_A DNA repair and recombin 99.6 3.9E-15 1.3E-19 141.7 9.0 156 54-257 6-185 (220)
120 2qm8_A GTPase/ATPase; G protei 99.6 2.3E-18 7.8E-23 176.5 -16.0 176 39-221 29-259 (337)
121 1s96_A Guanylate kinase, GMP k 99.5 9.9E-17 3.4E-21 154.5 -4.1 148 60-272 9-162 (219)
122 2qag_B Septin-6, protein NEDD5 99.5 8.9E-17 3E-21 168.5 -5.6 179 39-238 16-217 (427)
123 2gza_A Type IV secretion syste 99.5 2.8E-16 9.5E-21 162.5 -2.2 137 57-258 165-303 (361)
124 1htw_A HI0065; nucleotide-bind 99.5 7.5E-17 2.6E-21 147.5 -7.0 86 44-135 12-97 (158)
125 2rcn_A Probable GTPase ENGC; Y 99.5 5.1E-15 1.7E-19 152.1 4.8 121 57-189 206-328 (358)
126 2ewv_A Twitching motility prot 99.5 2.1E-15 7.1E-20 156.5 0.6 130 56-255 127-257 (372)
127 2yhs_A FTSY, cell division pro 99.5 9.7E-16 3.3E-20 162.7 -3.1 155 57-239 283-448 (503)
128 3e70_C DPA, signal recognition 99.5 5.8E-15 2E-19 150.4 2.2 165 64-260 126-307 (328)
129 1nij_A Hypothetical protein YJ 99.5 6.5E-18 2.2E-22 171.8 -20.0 161 68-249 5-197 (318)
130 1n0w_A DNA repair protein RAD5 99.5 8.1E-14 2.8E-18 134.5 8.7 152 57-257 13-209 (243)
131 2f1r_A Molybdopterin-guanine d 99.5 5.7E-16 1.9E-20 143.5 -6.6 135 68-224 3-163 (171)
132 1p9r_A General secretion pathw 99.4 7.5E-17 2.6E-21 169.5 -15.3 139 53-198 155-315 (418)
133 2yv5_A YJEQ protein; hydrolase 99.4 8.5E-15 2.9E-19 147.7 -0.4 120 64-188 162-301 (302)
134 1udx_A The GTP-binding protein 99.4 1.5E-14 5.3E-19 151.7 0.4 167 57-251 147-319 (416)
135 3ec2_A DNA replication protein 99.4 5.5E-15 1.9E-19 137.0 -2.9 114 61-243 32-146 (180)
136 2kjq_A DNAA-related protein; s 99.4 5.7E-14 1.9E-18 127.0 2.8 97 56-242 30-127 (149)
137 3auy_A DNA double-strand break 99.4 7.9E-13 2.7E-17 137.0 11.3 77 170-255 276-359 (371)
138 1in4_A RUVB, holliday junction 99.4 1.1E-15 3.7E-20 156.3 -12.7 164 39-223 18-195 (334)
139 1odf_A YGR205W, hypothetical 3 99.3 6.7E-14 2.3E-18 140.3 -1.4 125 65-209 29-169 (290)
140 1sxj_E Activator 1 40 kDa subu 99.3 1.2E-12 4E-17 133.9 6.1 144 70-250 39-184 (354)
141 2oap_1 GSPE-2, type II secreti 99.3 5.3E-15 1.8E-19 159.3 -12.0 174 54-248 247-457 (511)
142 1u0l_A Probable GTPase ENGC; p 99.3 1.2E-13 3.9E-18 139.3 -1.6 107 63-177 165-294 (301)
143 3lda_A DNA repair protein RAD5 99.3 1.3E-11 4.4E-16 129.0 12.4 152 57-258 167-364 (400)
144 1sq5_A Pantothenate kinase; P- 99.3 1.4E-14 4.9E-19 146.4 -10.4 140 38-207 36-199 (308)
145 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 6.1E-15 2.1E-19 153.5 -14.0 169 63-267 16-210 (392)
146 3c8u_A Fructokinase; YP_612366 99.2 3.6E-14 1.2E-18 134.9 -10.9 42 64-105 19-63 (208)
147 2x8a_A Nuclear valosin-contain 99.2 2E-15 6.8E-20 150.2 -20.6 129 53-203 32-164 (274)
148 1lvg_A Guanylate kinase, GMP k 99.2 1.4E-14 4.7E-19 137.1 -14.5 151 65-256 2-173 (198)
149 1t9h_A YLOQ, probable GTPase E 99.2 1.5E-12 5E-17 131.3 -1.7 119 62-182 168-303 (307)
150 1vma_A Cell division protein F 99.2 2.4E-11 8.1E-16 122.6 6.2 114 59-221 96-212 (306)
151 2dr3_A UPF0273 protein PH0284; 99.1 1.6E-11 5.3E-16 118.5 0.5 172 54-256 9-196 (247)
152 2r6a_A DNAB helicase, replicat 99.0 7.1E-11 2.4E-15 125.6 4.0 182 54-259 190-401 (454)
153 3euj_A Chromosome partition pr 99.0 3.9E-11 1.4E-15 127.7 1.8 52 54-106 17-68 (483)
154 1ls1_A Signal recognition part 99.0 4.3E-10 1.5E-14 112.8 9.3 132 40-220 77-209 (295)
155 2px0_A Flagellar biosynthesis 99.0 3.3E-10 1.1E-14 113.7 6.4 144 65-262 103-247 (296)
156 3k1j_A LON protease, ATP-depen 99.0 7.7E-12 2.6E-16 137.7 -7.9 160 52-219 45-227 (604)
157 3tr0_A Guanylate kinase, GMP k 98.9 2.3E-11 7.7E-16 114.3 -3.9 69 61-133 1-72 (205)
158 2zr9_A Protein RECA, recombina 98.9 1.8E-09 6.2E-14 110.8 9.9 153 56-264 48-237 (349)
159 1iy2_A ATP-dependent metallopr 98.9 6.1E-13 2.1E-17 132.0 -16.0 136 41-195 51-190 (278)
160 1ixz_A ATP-dependent metallopr 98.9 8E-13 2.7E-17 129.1 -16.5 142 40-202 26-171 (254)
161 2ius_A DNA translocase FTSK; n 98.9 5.7E-11 2E-15 127.3 -4.1 166 59-241 159-343 (512)
162 1oix_A RAS-related protein RAB 98.8 1.5E-09 5.2E-14 101.1 4.9 37 181-219 152-188 (191)
163 1qhl_A Protein (cell division 98.8 9.3E-11 3.2E-15 113.2 -4.2 72 39-120 9-91 (227)
164 2f9l_A RAB11B, member RAS onco 98.7 5.8E-10 2E-14 104.4 -3.7 37 183-221 130-166 (199)
165 2qtf_A Protein HFLX, GTP-bindi 98.7 5E-08 1.7E-12 100.6 10.5 146 66-222 177-353 (364)
166 3lnc_A Guanylate kinase, GMP k 98.7 2.9E-09 9.9E-14 102.4 1.1 39 55-93 15-54 (231)
167 3hr8_A Protein RECA; alpha and 98.7 5.6E-09 1.9E-13 107.2 2.2 66 55-120 47-115 (356)
168 1svm_A Large T antigen; AAA+ f 98.6 4.9E-11 1.7E-15 123.5 -16.0 139 54-203 156-312 (377)
169 3kta_A Chromosome segregation 98.6 2.3E-08 7.8E-13 92.1 3.2 42 55-97 13-56 (182)
170 4eun_A Thermoresistant glucoki 98.5 3.7E-09 1.3E-13 99.4 -3.7 56 61-120 23-80 (200)
171 3nwj_A ATSK2; P loop, shikimat 98.4 1.1E-08 3.9E-13 100.0 -2.6 53 38-91 16-72 (250)
172 2xau_A PRE-mRNA-splicing facto 98.4 2.4E-07 8.1E-12 104.6 7.2 77 169-251 185-262 (773)
173 3cr8_A Sulfate adenylyltranfer 98.4 1E-08 3.5E-13 111.1 -4.2 43 63-105 365-409 (552)
174 2ce7_A Cell division protein F 98.4 6.8E-07 2.3E-11 95.2 9.6 62 177-240 93-164 (476)
175 2j41_A Guanylate kinase; GMP, 98.4 1E-07 3.5E-12 89.2 2.6 35 62-96 1-35 (207)
176 2dhr_A FTSH; AAA+ protein, hex 98.3 2.6E-09 8.8E-14 114.5 -10.2 149 53-220 52-213 (499)
177 3a00_A Guanylate kinase, GMP k 98.3 8.2E-08 2.8E-12 89.1 0.5 31 67-97 1-31 (186)
178 1zu4_A FTSY; GTPase, signal re 98.3 6.8E-08 2.3E-12 97.9 -0.1 79 57-135 95-186 (320)
179 4e22_A Cytidylate kinase; P-lo 98.3 6.7E-08 2.3E-12 94.4 -0.6 57 65-121 25-96 (252)
180 4a1f_A DNAB helicase, replicat 98.3 3.6E-07 1.2E-11 93.0 3.9 120 55-223 34-153 (338)
181 3uie_A Adenylyl-sulfate kinase 98.3 2.6E-08 9E-13 93.5 -4.5 53 52-105 10-64 (200)
182 3t34_A Dynamin-related protein 98.2 5.8E-08 2E-12 99.8 -4.1 176 54-238 24-212 (360)
183 1jjv_A Dephospho-COA kinase; P 98.2 2.6E-07 9E-12 86.7 0.4 127 69-255 4-131 (206)
184 2e87_A Hypothetical protein PH 98.2 2.2E-06 7.7E-11 87.8 7.1 112 66-221 166-278 (357)
185 3vaa_A Shikimate kinase, SK; s 98.1 1.1E-06 3.7E-11 82.3 3.0 40 52-91 10-49 (199)
186 1kgd_A CASK, peripheral plasma 98.1 7.4E-07 2.5E-11 82.2 1.6 36 65-100 3-39 (180)
187 1fnn_A CDC6P, cell division co 98.1 1.4E-05 4.8E-10 81.7 10.6 46 191-240 124-169 (389)
188 2vp4_A Deoxynucleoside kinase; 98.0 9.8E-07 3.4E-11 84.7 1.7 40 62-105 15-54 (230)
189 2z4s_A Chromosomal replication 98.0 2.1E-06 7.1E-11 90.7 2.5 70 191-266 193-264 (440)
190 2dy1_A Elongation factor G; tr 97.9 2.8E-06 9.4E-11 94.4 2.9 59 61-120 3-66 (665)
191 1rz3_A Hypothetical protein rb 97.9 1.2E-06 4.2E-11 82.2 -0.1 41 64-104 19-59 (201)
192 3ney_A 55 kDa erythrocyte memb 97.9 2.8E-06 9.7E-11 79.8 1.8 30 63-92 15-44 (197)
193 1v5w_A DMC1, meiotic recombina 97.9 4.3E-05 1.5E-09 77.8 10.2 29 62-90 117-145 (343)
194 3tau_A Guanylate kinase, GMP k 97.9 5.8E-06 2E-10 78.0 3.4 29 65-93 6-34 (208)
195 3bh0_A DNAB-like replicative h 97.9 6.8E-06 2.3E-10 82.8 4.1 123 54-223 55-177 (315)
196 1knq_A Gluconate kinase; ALFA/ 97.9 2.9E-06 9.9E-11 77.3 1.0 37 65-105 6-42 (175)
197 2qt1_A Nicotinamide riboside k 97.8 1.1E-05 3.8E-10 75.6 4.0 30 63-92 17-46 (207)
198 3kl4_A SRP54, signal recogniti 97.8 4.1E-05 1.4E-09 80.4 8.5 39 66-104 96-134 (433)
199 2z43_A DNA repair and recombin 97.8 7.2E-05 2.4E-09 75.5 9.9 34 57-90 96-130 (324)
200 3tqc_A Pantothenate kinase; bi 97.7 1.1E-06 3.6E-11 89.0 -4.2 41 52-92 71-117 (321)
201 1ega_A Protein (GTP-binding pr 97.7 4.8E-05 1.6E-09 76.1 7.8 65 175-251 101-169 (301)
202 3b9p_A CG5977-PA, isoform A; A 97.7 0.00018 6.2E-09 71.0 11.6 31 177-207 98-128 (297)
203 1f2t_A RAD50 ABC-ATPase; DNA d 97.7 2.9E-05 1E-09 69.4 4.6 30 58-88 15-44 (149)
204 1cke_A CK, MSSA, protein (cyti 97.6 2.8E-06 9.4E-11 80.7 -3.1 54 67-120 5-73 (227)
205 1kag_A SKI, shikimate kinase I 97.6 1.8E-05 6.2E-10 71.6 2.2 28 66-93 3-30 (173)
206 2q6t_A DNAB replication FORK h 97.6 5.6E-05 1.9E-09 79.7 5.9 175 54-256 187-397 (444)
207 2p67_A LAO/AO transport system 97.6 3.8E-06 1.3E-10 85.6 -3.4 65 39-105 30-94 (341)
208 3llm_A ATP-dependent RNA helic 97.5 1.1E-05 3.9E-10 77.3 -0.5 68 175-250 161-229 (235)
209 3cf0_A Transitional endoplasmi 97.5 0.00015 5.3E-09 72.2 7.5 29 63-91 45-73 (301)
210 2qby_A CDC6 homolog 1, cell di 97.5 1.9E-05 6.5E-10 80.3 0.9 29 65-93 43-71 (386)
211 1mky_A Probable GTP-binding pr 97.4 8.9E-05 3E-09 78.0 5.3 37 69-105 182-230 (439)
212 2www_A Methylmalonic aciduria 97.4 2.3E-05 7.8E-10 80.2 0.5 41 65-105 72-112 (349)
213 4eaq_A DTMP kinase, thymidylat 97.4 3E-05 1E-09 74.4 1.4 44 57-101 13-59 (229)
214 2w58_A DNAI, primosome compone 97.4 0.00019 6.6E-09 66.6 6.8 24 68-91 55-78 (202)
215 2pez_A Bifunctional 3'-phospho 97.4 2.5E-05 8.7E-10 71.3 0.6 38 65-103 3-42 (179)
216 2qag_A Septin-2, protein NEDD5 97.4 5.4E-06 1.9E-10 85.2 -4.7 57 39-103 17-73 (361)
217 3qks_A DNA double-strand break 97.4 0.00013 4.4E-09 68.6 4.6 31 58-89 15-45 (203)
218 1u94_A RECA protein, recombina 97.3 0.0043 1.5E-07 63.4 16.0 36 54-89 48-85 (356)
219 2gj8_A MNME, tRNA modification 97.3 0.00019 6.4E-09 65.0 5.2 27 65-91 2-28 (172)
220 3lxx_A GTPase IMAP family memb 97.3 0.0023 8E-08 61.0 13.1 28 69-96 31-58 (239)
221 1ypw_A Transitional endoplasmi 97.3 0.00012 4E-09 83.0 4.2 31 62-92 233-263 (806)
222 3m6a_A ATP-dependent protease 97.3 2.7E-05 9.3E-10 84.3 -1.0 49 54-103 96-144 (543)
223 1m2o_B GTP-binding protein SAR 97.3 0.00018 6E-09 66.3 4.5 35 55-90 12-46 (190)
224 1l8q_A Chromosomal replication 97.3 0.00042 1.4E-08 69.4 7.5 47 190-242 96-143 (324)
225 1m7g_A Adenylylsulfate kinase; 97.3 4.9E-05 1.7E-09 71.5 0.5 41 63-103 21-63 (211)
226 3ice_A Transcription terminati 97.2 3.7E-05 1.3E-09 79.0 -0.4 52 39-91 133-198 (422)
227 2i1q_A DNA repair and recombin 97.2 0.0011 3.7E-08 66.5 10.0 34 56-89 86-120 (322)
228 3auy_A DNA double-strand break 97.2 0.00027 9.4E-09 72.6 4.9 44 40-88 3-46 (371)
229 1f6b_A SAR1; gtpases, N-termin 97.1 8.5E-05 2.9E-09 68.9 0.6 36 54-90 13-48 (198)
230 2ffh_A Protein (FFH); SRP54, s 97.1 9E-05 3.1E-09 77.6 0.4 46 58-105 91-136 (425)
231 3bos_A Putative DNA replicatio 97.1 0.00026 8.8E-09 66.8 3.6 26 66-91 51-76 (242)
232 3h4m_A Proteasome-activating n 97.0 0.0023 7.9E-08 62.5 9.7 27 65-91 49-75 (285)
233 2yvu_A Probable adenylyl-sulfa 97.0 0.00016 5.4E-09 66.4 1.1 34 65-98 11-44 (186)
234 2wji_A Ferrous iron transport 97.0 0.00076 2.6E-08 60.3 5.6 24 69-92 5-28 (165)
235 1y63_A LMAJ004144AAA protein; 97.0 0.00029 9.8E-09 64.8 2.7 32 59-90 2-33 (184)
236 2qor_A Guanylate kinase; phosp 96.9 0.00034 1.2E-08 65.3 2.9 30 63-92 8-37 (204)
237 2wjg_A FEOB, ferrous iron tran 96.9 0.00052 1.8E-08 62.3 4.0 22 69-90 9-30 (188)
238 2ohf_A Protein OLA1, GTP-bindi 96.9 0.00048 1.7E-08 71.3 3.7 41 63-103 18-69 (396)
239 1j8m_F SRP54, signal recogniti 96.8 7.5E-05 2.6E-09 74.6 -2.6 47 58-105 89-136 (297)
240 2if2_A Dephospho-COA kinase; a 96.8 0.00044 1.5E-08 64.2 2.6 21 69-89 3-23 (204)
241 2b8t_A Thymidine kinase; deoxy 96.7 0.0042 1.5E-07 59.2 8.3 53 192-255 89-150 (223)
242 1np6_A Molybdopterin-guanine d 96.6 0.00064 2.2E-08 62.4 2.1 37 68-104 7-46 (174)
243 3cm0_A Adenylate kinase; ATP-b 96.6 0.001 3.5E-08 60.5 3.2 25 65-89 2-26 (186)
244 2zej_A Dardarin, leucine-rich 96.6 0.001 3.5E-08 60.5 3.2 25 69-93 4-28 (184)
245 1xp8_A RECA protein, recombina 96.6 0.033 1.1E-06 57.0 14.8 34 56-89 61-96 (366)
246 1q57_A DNA primase/helicase; d 96.6 0.028 9.5E-07 59.9 14.8 35 55-89 230-264 (503)
247 3d8b_A Fidgetin-like protein 1 96.6 0.013 4.3E-07 59.7 11.5 27 65-91 115-141 (357)
248 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00019 6.4E-09 73.2 -2.2 37 55-91 10-48 (359)
249 1sxj_C Activator 1 40 kDa subu 96.5 0.00021 7.2E-09 72.3 -2.1 43 52-94 29-73 (340)
250 3t61_A Gluconokinase; PSI-biol 96.5 0.00091 3.1E-08 62.1 2.3 25 67-91 18-42 (202)
251 2p5t_B PEZT; postsegregational 96.4 0.00087 3E-08 64.9 1.8 40 63-104 28-67 (253)
252 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.011 3.6E-07 56.7 9.5 26 65-90 37-62 (262)
253 2v1u_A Cell division control p 96.4 0.0024 8.2E-08 64.7 5.1 27 65-91 42-68 (387)
254 1qhx_A CPT, protein (chloramph 96.4 0.0018 6.2E-08 58.4 3.5 26 67-92 3-28 (178)
255 1q3t_A Cytidylate kinase; nucl 96.4 0.0015 5E-08 62.5 2.9 28 63-90 12-39 (236)
256 3kb2_A SPBC2 prophage-derived 96.4 0.0017 5.7E-08 58.1 3.2 23 69-91 3-25 (173)
257 2zts_A Putative uncharacterize 96.3 0.0052 1.8E-07 58.2 6.6 61 190-255 133-206 (251)
258 3cmw_A Protein RECA, recombina 96.3 0.011 3.9E-07 71.2 10.5 29 63-91 728-756 (1706)
259 1lv7_A FTSH; alpha/beta domain 96.2 0.0012 4.1E-08 63.7 1.6 35 56-92 36-70 (257)
260 3bgw_A DNAB-like replicative h 96.2 0.012 4.1E-07 61.9 9.1 118 54-223 184-306 (444)
261 1kht_A Adenylate kinase; phosp 96.2 0.0026 8.9E-08 57.8 3.4 25 66-90 2-26 (192)
262 3n70_A Transport activator; si 96.1 0.011 3.9E-07 51.8 7.3 27 66-92 23-49 (145)
263 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.056 1.9E-06 54.1 13.3 27 65-91 43-69 (322)
264 3r20_A Cytidylate kinase; stru 96.1 0.0027 9.2E-08 61.0 3.3 24 67-90 9-32 (233)
265 2rhm_A Putative kinase; P-loop 96.1 0.0025 8.4E-08 58.2 2.9 26 65-90 3-28 (193)
266 2ze6_A Isopentenyl transferase 96.1 0.0025 8.5E-08 61.8 2.9 24 68-91 2-25 (253)
267 3ihw_A Centg3; RAS, centaurin, 96.1 0.0049 1.7E-07 56.1 4.7 22 69-90 22-43 (184)
268 1gtv_A TMK, thymidylate kinase 96.1 0.00092 3.1E-08 62.3 -0.3 30 69-98 2-31 (214)
269 3lw7_A Adenylate kinase relate 96.0 0.0031 1.1E-07 56.1 3.1 19 69-87 3-21 (179)
270 4ag6_A VIRB4 ATPase, type IV s 96.0 0.0015 5.1E-08 67.4 1.1 37 66-102 34-70 (392)
271 3trf_A Shikimate kinase, SK; a 95.9 0.0038 1.3E-07 56.7 3.3 26 66-91 4-29 (185)
272 1jal_A YCHF protein; nucleotid 95.9 0.0046 1.6E-07 63.3 4.2 36 67-102 2-48 (363)
273 1ex7_A Guanylate kinase; subst 95.9 0.0035 1.2E-07 58.1 3.0 23 69-91 3-25 (186)
274 2jaq_A Deoxyguanosine kinase; 95.9 0.0039 1.3E-07 57.2 3.2 23 69-91 2-24 (205)
275 2plr_A DTMP kinase, probable t 95.9 0.0047 1.6E-07 57.1 3.6 27 66-92 3-29 (213)
276 1vht_A Dephospho-COA kinase; s 95.9 0.0045 1.5E-07 58.0 3.5 24 66-89 3-26 (218)
277 3iij_A Coilin-interacting nucl 95.9 0.0037 1.3E-07 56.6 2.9 25 66-90 10-34 (180)
278 1ly1_A Polynucleotide kinase; 95.8 0.0047 1.6E-07 55.5 3.4 22 68-89 3-24 (181)
279 2v54_A DTMP kinase, thymidylat 95.8 0.0047 1.6E-07 56.9 3.4 26 66-91 3-28 (204)
280 3cmu_A Protein RECA, recombina 95.8 0.019 6.4E-07 70.2 9.4 34 56-89 370-405 (2050)
281 1via_A Shikimate kinase; struc 95.8 0.0045 1.5E-07 55.9 3.0 23 69-91 6-28 (175)
282 1fzq_A ADP-ribosylation factor 95.7 0.0044 1.5E-07 56.2 2.8 23 69-91 18-40 (181)
283 2wwf_A Thymidilate kinase, put 95.7 0.0051 1.7E-07 57.0 3.3 26 65-90 8-33 (212)
284 3io5_A Recombination and repai 95.7 0.0071 2.4E-07 60.7 4.4 27 62-89 24-51 (333)
285 3k53_A Ferrous iron transport 95.7 0.0043 1.5E-07 60.5 2.9 24 69-92 5-28 (271)
286 1gvn_B Zeta; postsegregational 95.7 0.0045 1.5E-07 61.2 3.0 36 65-102 31-66 (287)
287 2c95_A Adenylate kinase 1; tra 95.7 0.005 1.7E-07 56.3 3.0 26 65-90 7-32 (196)
288 1tev_A UMP-CMP kinase; ploop, 95.6 0.0063 2.2E-07 55.3 3.5 25 66-90 2-26 (196)
289 1uf9_A TT1252 protein; P-loop, 95.6 0.0059 2E-07 56.1 3.3 23 68-90 9-31 (203)
290 1nn5_A Similar to deoxythymidy 95.6 0.0058 2E-07 56.7 3.2 27 64-90 6-32 (215)
291 1nks_A Adenylate kinase; therm 95.6 0.006 2E-07 55.4 3.0 23 69-91 3-25 (194)
292 3cmw_A Protein RECA, recombina 95.6 0.13 4.4E-06 62.2 15.1 35 55-89 369-405 (1706)
293 3co5_A Putative two-component 95.5 0.021 7E-07 50.0 6.3 26 66-91 26-51 (143)
294 2r8r_A Sensor protein; KDPD, P 95.5 0.0041 1.4E-07 59.4 1.8 25 66-90 4-29 (228)
295 1xjc_A MOBB protein homolog; s 95.4 0.0077 2.6E-07 54.8 3.3 25 68-92 5-29 (169)
296 2bwj_A Adenylate kinase 5; pho 95.4 0.0062 2.1E-07 55.8 2.5 27 65-91 10-36 (199)
297 2vli_A Antibiotic resistance p 95.4 0.0058 2E-07 55.2 2.3 26 66-91 4-29 (183)
298 3hu3_A Transitional endoplasmi 95.3 0.018 6E-07 61.4 6.1 28 64-91 235-262 (489)
299 3cbq_A GTP-binding protein REM 95.3 0.0085 2.9E-07 55.1 3.2 22 69-90 25-46 (195)
300 2nzj_A GTP-binding protein REM 95.3 0.0086 2.9E-07 53.1 3.1 23 69-91 6-28 (175)
301 1aky_A Adenylate kinase; ATP:A 95.3 0.0092 3.1E-07 56.0 3.5 26 66-91 3-28 (220)
302 3q72_A GTP-binding protein RAD 95.3 0.0072 2.5E-07 53.2 2.6 23 70-92 5-27 (166)
303 2erx_A GTP-binding protein DI- 95.3 0.0087 3E-07 52.7 3.1 22 69-90 5-26 (172)
304 3iby_A Ferrous iron transport 95.3 0.0097 3.3E-07 57.7 3.7 23 69-91 3-25 (256)
305 2ged_A SR-beta, signal recogni 95.3 0.0072 2.5E-07 54.8 2.6 23 69-91 50-72 (193)
306 2z0h_A DTMP kinase, thymidylat 95.3 0.0091 3.1E-07 54.5 3.2 23 69-91 2-24 (197)
307 1z2a_A RAS-related protein RAB 95.2 0.0077 2.6E-07 52.9 2.5 23 69-91 7-29 (168)
308 3ake_A Cytidylate kinase; CMP 95.2 0.0096 3.3E-07 54.9 3.2 23 69-91 4-26 (208)
309 4fcw_A Chaperone protein CLPB; 95.2 0.0052 1.8E-07 60.6 1.4 30 67-96 47-76 (311)
310 3b1v_A Ferrous iron uptake tra 95.2 0.01 3.4E-07 58.2 3.4 23 69-91 5-27 (272)
311 1ko7_A HPR kinase/phosphatase; 95.2 0.017 5.9E-07 57.8 5.1 36 54-90 132-167 (314)
312 1zd8_A GTP:AMP phosphotransfer 95.2 0.0098 3.3E-07 56.1 3.2 27 65-91 5-31 (227)
313 3tw8_B RAS-related protein RAB 95.2 0.0093 3.2E-07 53.1 2.9 23 69-91 11-33 (181)
314 3q85_A GTP-binding protein REM 95.2 0.01 3.5E-07 52.3 3.1 22 70-91 5-26 (169)
315 1kao_A RAP2A; GTP-binding prot 95.1 0.0087 3E-07 52.3 2.6 23 69-91 5-27 (167)
316 2dyk_A GTP-binding protein; GT 95.1 0.0089 3E-07 52.2 2.6 23 69-91 3-25 (161)
317 2ce2_X GTPase HRAS; signaling 95.1 0.0082 2.8E-07 52.3 2.3 22 70-91 6-27 (166)
318 1u8z_A RAS-related protein RAL 95.1 0.009 3.1E-07 52.3 2.5 23 69-91 6-28 (168)
319 1xx6_A Thymidine kinase; NESG, 95.1 0.04 1.4E-06 51.1 7.0 53 192-255 81-142 (191)
320 3fb4_A Adenylate kinase; psych 95.1 0.011 3.8E-07 55.0 3.2 22 69-90 2-23 (216)
321 1z0j_A RAB-22, RAS-related pro 95.0 0.0096 3.3E-07 52.4 2.6 23 69-91 8-30 (170)
322 1svi_A GTP-binding protein YSX 95.0 0.0098 3.3E-07 54.0 2.6 23 69-91 25-47 (195)
323 2pbr_A DTMP kinase, thymidylat 95.0 0.012 4E-07 53.5 3.2 23 69-91 2-24 (195)
324 3lxw_A GTPase IMAP family memb 95.0 0.013 4.4E-07 56.4 3.6 24 69-92 23-46 (247)
325 2cdn_A Adenylate kinase; phosp 95.0 0.013 4.3E-07 54.1 3.4 24 67-90 20-43 (201)
326 1z08_A RAS-related protein RAB 95.0 0.0098 3.4E-07 52.4 2.5 23 69-91 8-30 (170)
327 1ek0_A Protein (GTP-binding pr 95.0 0.0099 3.4E-07 52.2 2.5 22 70-91 6-27 (170)
328 1zuh_A Shikimate kinase; alpha 95.0 0.013 4.4E-07 52.3 3.3 23 68-90 8-30 (168)
329 1g16_A RAS-related protein SEC 95.0 0.0093 3.2E-07 52.5 2.3 22 70-91 6-27 (170)
330 1e6c_A Shikimate kinase; phosp 95.0 0.011 3.7E-07 52.9 2.7 22 69-90 4-25 (173)
331 1c1y_A RAS-related protein RAP 95.0 0.01 3.5E-07 52.0 2.5 21 70-90 6-26 (167)
332 1wms_A RAB-9, RAB9, RAS-relate 94.9 0.01 3.6E-07 52.7 2.6 23 69-91 9-31 (177)
333 2lkc_A Translation initiation 94.9 0.015 5.1E-07 51.7 3.6 25 67-91 8-32 (178)
334 3pqc_A Probable GTP-binding pr 94.9 0.011 3.7E-07 53.4 2.6 23 69-91 25-47 (195)
335 1ky3_A GTP-binding protein YPT 94.9 0.011 3.6E-07 52.7 2.6 23 69-91 10-32 (182)
336 1ukz_A Uridylate kinase; trans 94.9 0.013 4.6E-07 53.9 3.3 24 67-90 15-38 (203)
337 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.014 4.9E-07 56.4 3.6 25 66-90 3-27 (260)
338 2cxx_A Probable GTP-binding pr 94.9 0.011 3.8E-07 53.1 2.7 22 70-91 4-25 (190)
339 3dl0_A Adenylate kinase; phosp 94.9 0.013 4.5E-07 54.6 3.2 22 69-90 2-23 (216)
340 2pt5_A Shikimate kinase, SK; a 94.9 0.014 4.8E-07 51.9 3.2 22 69-90 2-23 (168)
341 2fn4_A P23, RAS-related protei 94.9 0.01 3.6E-07 52.7 2.3 22 69-90 11-32 (181)
342 1qf9_A UMP/CMP kinase, protein 94.9 0.014 4.8E-07 52.8 3.2 24 67-90 6-29 (194)
343 1zak_A Adenylate kinase; ATP:A 94.9 0.011 3.8E-07 55.5 2.6 26 66-91 4-29 (222)
344 2iyv_A Shikimate kinase, SK; t 94.8 0.011 3.9E-07 53.5 2.5 23 68-90 3-25 (184)
345 1moz_A ARL1, ADP-ribosylation 94.8 0.0086 2.9E-07 53.7 1.6 21 69-89 20-40 (183)
346 1r2q_A RAS-related protein RAB 94.8 0.012 4.1E-07 51.6 2.5 22 69-90 8-29 (170)
347 2hxs_A RAB-26, RAS-related pro 94.8 0.014 4.8E-07 51.9 3.0 23 69-91 8-30 (178)
348 3clv_A RAB5 protein, putative; 94.8 0.012 4.2E-07 53.2 2.6 23 69-91 9-31 (208)
349 4dsu_A GTPase KRAS, isoform 2B 94.8 0.012 4.2E-07 52.7 2.6 23 69-91 6-28 (189)
350 1upt_A ARL1, ADP-ribosylation 94.7 0.013 4.4E-07 51.7 2.5 22 69-90 9-30 (171)
351 1wf3_A GTP-binding protein; GT 94.7 0.015 5.3E-07 57.7 3.3 25 66-91 7-31 (301)
352 2oil_A CATX-8, RAS-related pro 94.7 0.013 4.4E-07 53.2 2.5 23 69-91 27-49 (193)
353 3bc1_A RAS-related protein RAB 94.7 0.013 4.4E-07 52.7 2.5 23 69-91 13-35 (195)
354 3t5d_A Septin-7; GTP-binding p 94.6 0.014 4.7E-07 57.0 2.7 22 70-91 11-32 (274)
355 1uj2_A Uridine-cytidine kinase 94.6 0.016 5.5E-07 55.7 3.2 24 68-91 23-46 (252)
356 3t1o_A Gliding protein MGLA; G 94.6 0.014 4.9E-07 52.6 2.7 24 69-92 16-39 (198)
357 1r8s_A ADP-ribosylation factor 94.6 0.014 4.7E-07 51.2 2.5 21 70-90 3-23 (164)
358 3tlx_A Adenylate kinase 2; str 94.6 0.018 6.3E-07 55.1 3.5 25 66-90 28-52 (243)
359 2j9r_A Thymidine kinase; TK1, 94.6 0.062 2.1E-06 50.7 7.0 53 192-255 101-162 (214)
360 2y8e_A RAB-protein 6, GH09086P 94.6 0.013 4.6E-07 51.9 2.3 22 69-90 16-37 (179)
361 2grj_A Dephospho-COA kinase; T 94.6 0.018 6.2E-07 53.4 3.2 23 68-90 13-35 (192)
362 3iev_A GTP-binding protein ERA 94.5 0.018 6.1E-07 57.4 3.3 23 69-91 12-34 (308)
363 2g6b_A RAS-related protein RAB 94.5 0.015 5.1E-07 51.8 2.5 23 69-91 12-34 (180)
364 1z0f_A RAB14, member RAS oncog 94.5 0.015 5.1E-07 51.6 2.5 23 69-91 17-39 (179)
365 2a9k_A RAS-related protein RAL 94.5 0.015 5.1E-07 52.0 2.5 23 69-91 20-42 (187)
366 1ksh_A ARF-like protein 2; sma 94.5 0.018 6.1E-07 51.8 3.0 24 68-91 19-42 (186)
367 3con_A GTPase NRAS; structural 94.5 0.015 5.2E-07 52.5 2.5 23 69-91 23-45 (190)
368 2efe_B Small GTP-binding prote 94.5 0.016 5.5E-07 51.7 2.5 23 69-91 14-36 (181)
369 2xtp_A GTPase IMAP family memb 94.4 0.017 5.9E-07 55.5 2.9 23 69-91 24-46 (260)
370 4dhe_A Probable GTP-binding pr 94.4 0.012 4.2E-07 54.7 1.8 23 69-91 31-53 (223)
371 2qmh_A HPR kinase/phosphorylas 94.4 0.032 1.1E-06 52.1 4.6 35 56-91 24-58 (205)
372 3a1s_A Iron(II) transport prot 94.4 0.019 6.7E-07 55.6 3.1 23 69-91 7-29 (258)
373 1jbk_A CLPB protein; beta barr 94.4 0.023 7.7E-07 50.8 3.4 26 66-91 42-67 (195)
374 2xb4_A Adenylate kinase; ATP-b 94.4 0.021 7.2E-07 53.8 3.2 22 69-90 2-23 (223)
375 3cnl_A YLQF, putative uncharac 94.4 0.023 7.7E-07 55.4 3.5 30 68-97 100-129 (262)
376 1vg8_A RAS-related protein RAB 94.4 0.017 5.9E-07 52.8 2.6 23 69-91 10-32 (207)
377 2bov_A RAla, RAS-related prote 94.4 0.017 5.8E-07 52.8 2.5 23 69-91 16-38 (206)
378 3i8s_A Ferrous iron transport 94.4 0.019 6.3E-07 56.2 2.9 23 69-91 5-27 (274)
379 2bme_A RAB4A, RAS-related prot 94.4 0.016 5.5E-07 52.0 2.3 23 69-91 12-34 (186)
380 1nrj_B SR-beta, signal recogni 94.3 0.017 5.8E-07 53.6 2.5 23 69-91 14-36 (218)
381 2dby_A GTP-binding protein; GD 94.3 0.016 5.5E-07 59.4 2.5 21 70-90 4-24 (368)
382 2gf9_A RAS-related protein RAB 94.3 0.017 5.9E-07 52.2 2.5 23 69-91 24-46 (189)
383 1zbd_A Rabphilin-3A; G protein 94.3 0.021 7.3E-07 52.2 3.1 23 69-91 10-32 (203)
384 1jwy_B Dynamin A GTPase domain 94.3 0.019 6.4E-07 56.8 2.9 23 69-91 26-48 (315)
385 2il1_A RAB12; G-protein, GDP, 94.3 0.02 6.8E-07 52.2 2.8 22 70-91 29-50 (192)
386 2gf0_A GTP-binding protein DI- 94.3 0.017 5.8E-07 52.4 2.3 22 69-90 10-31 (199)
387 3kkq_A RAS-related protein M-R 94.3 0.024 8.1E-07 50.8 3.2 23 69-91 20-42 (183)
388 1m7b_A RND3/RHOE small GTP-bin 94.3 0.017 5.9E-07 52.1 2.3 23 69-91 9-31 (184)
389 2f6r_A COA synthase, bifunctio 94.2 0.021 7.1E-07 56.1 3.0 22 68-89 76-97 (281)
390 2fg5_A RAB-22B, RAS-related pr 94.2 0.018 6E-07 52.5 2.3 23 69-91 25-47 (192)
391 3tkl_A RAS-related protein RAB 94.2 0.024 8.3E-07 51.2 3.2 23 69-91 18-40 (196)
392 3be4_A Adenylate kinase; malar 94.2 0.023 8E-07 53.2 3.2 26 66-91 4-29 (217)
393 2h57_A ADP-ribosylation factor 94.2 0.017 6E-07 52.2 2.2 23 69-91 23-45 (190)
394 1mh1_A RAC1; GTP-binding, GTPa 94.2 0.02 6.8E-07 51.2 2.5 22 69-90 7-28 (186)
395 2o52_A RAS-related protein RAB 94.2 0.022 7.6E-07 52.3 2.9 23 69-91 27-49 (200)
396 1zj6_A ADP-ribosylation factor 94.1 0.023 7.8E-07 51.3 2.9 23 69-91 18-40 (187)
397 3umf_A Adenylate kinase; rossm 94.1 0.026 8.9E-07 53.4 3.3 25 66-90 28-52 (217)
398 2qu8_A Putative nucleolar GTP- 94.1 0.023 7.9E-07 53.4 3.0 23 69-91 31-53 (228)
399 1a7j_A Phosphoribulokinase; tr 94.1 0.012 4.1E-07 58.2 1.0 25 66-90 4-28 (290)
400 2wsm_A Hydrogenase expression/ 94.1 0.021 7E-07 53.2 2.5 23 68-90 31-53 (221)
401 1z06_A RAS-related protein RAB 94.1 0.021 7.2E-07 51.6 2.6 22 69-90 22-43 (189)
402 2cjw_A GTP-binding protein GEM 94.1 0.021 7.1E-07 52.3 2.5 22 69-90 8-29 (192)
403 4bas_A ADP-ribosylation factor 94.1 0.024 8.1E-07 51.5 2.9 23 69-91 19-41 (199)
404 1e4v_A Adenylate kinase; trans 94.1 0.024 8.3E-07 52.8 3.0 22 69-90 2-23 (214)
405 3oes_A GTPase rhebl1; small GT 94.0 0.02 6.8E-07 52.5 2.3 23 69-91 26-48 (201)
406 1ltq_A Polynucleotide kinase; 94.0 0.027 9.3E-07 55.3 3.4 22 68-89 3-24 (301)
407 3llu_A RAS-related GTP-binding 94.0 0.027 9.3E-07 51.4 3.1 24 69-92 22-45 (196)
408 2h17_A ADP-ribosylation factor 94.0 0.021 7.3E-07 51.3 2.4 23 69-91 23-45 (181)
409 4edh_A DTMP kinase, thymidylat 94.0 0.031 1.1E-06 52.7 3.6 28 65-92 4-31 (213)
410 3a8t_A Adenylate isopentenyltr 94.0 0.034 1.2E-06 56.2 4.0 27 66-92 39-65 (339)
411 2f7s_A C25KG, RAS-related prot 94.0 0.027 9.3E-07 52.1 3.1 24 69-92 27-50 (217)
412 3t5g_A GTP-binding protein RHE 94.0 0.021 7.2E-07 51.0 2.3 21 69-89 8-28 (181)
413 2a5j_A RAS-related protein RAB 94.0 0.023 7.7E-07 51.6 2.5 23 69-91 23-45 (191)
414 3dz8_A RAS-related protein RAB 94.0 0.021 7.1E-07 51.8 2.3 23 69-91 25-47 (191)
415 1zd9_A ADP-ribosylation factor 94.0 0.023 7.9E-07 51.5 2.5 22 69-90 24-45 (188)
416 3bwd_D RAC-like GTP-binding pr 94.0 0.023 7.9E-07 50.6 2.5 22 69-90 10-31 (182)
417 2bcg_Y Protein YP2, GTP-bindin 93.9 0.021 7.3E-07 52.4 2.3 23 69-91 10-32 (206)
418 2orv_A Thymidine kinase; TP4A 93.9 0.24 8.4E-06 47.2 9.6 53 191-255 89-150 (234)
419 2aka_B Dynamin-1; fusion prote 93.9 0.023 7.9E-07 55.6 2.6 23 69-91 28-50 (299)
420 2atv_A RERG, RAS-like estrogen 93.9 0.024 8.2E-07 51.7 2.6 22 69-90 30-51 (196)
421 1x3s_A RAS-related protein RAB 93.9 0.024 8.1E-07 51.2 2.5 23 69-91 17-39 (195)
422 3cph_A RAS-related protein SEC 93.9 0.024 8.1E-07 52.1 2.5 23 69-91 22-44 (213)
423 3reg_A RHO-like small GTPase; 93.9 0.024 8.2E-07 51.5 2.5 23 69-91 25-47 (194)
424 2p5s_A RAS and EF-hand domain 93.9 0.024 8.3E-07 51.8 2.5 23 69-91 30-52 (199)
425 1ak2_A Adenylate kinase isoenz 93.8 0.033 1.1E-06 52.8 3.4 26 66-91 15-40 (233)
426 2ew1_A RAS-related protein RAB 93.8 0.023 7.8E-07 52.6 2.3 22 69-90 28-49 (201)
427 3zvl_A Bifunctional polynucleo 93.8 0.029 9.9E-07 58.4 3.3 26 65-90 256-281 (416)
428 2q3h_A RAS homolog gene family 93.8 0.031 1.1E-06 51.0 3.1 23 69-91 22-44 (201)
429 3v9p_A DTMP kinase, thymidylat 93.8 0.025 8.5E-07 54.0 2.5 27 65-91 23-49 (227)
430 2iwr_A Centaurin gamma 1; ANK 93.8 0.021 7.2E-07 50.9 1.9 22 69-90 9-30 (178)
431 2j1l_A RHO-related GTP-binding 93.8 0.029 9.9E-07 52.1 2.9 22 69-90 36-57 (214)
432 2p65_A Hypothetical protein PF 93.8 0.028 9.6E-07 50.1 2.7 26 66-91 42-67 (187)
433 3d3q_A TRNA delta(2)-isopenten 93.8 0.031 1.1E-06 56.6 3.2 25 68-92 8-32 (340)
434 2fv8_A H6, RHO-related GTP-bin 93.7 0.025 8.6E-07 52.1 2.3 23 69-91 27-49 (207)
435 2b6h_A ADP-ribosylation factor 93.7 0.028 9.7E-07 51.2 2.6 22 69-90 31-52 (192)
436 2fu5_C RAS-related protein RAB 93.7 0.02 7E-07 51.2 1.6 22 69-90 10-31 (183)
437 3cmu_A Protein RECA, recombina 93.6 0.056 1.9E-06 66.1 5.7 36 56-91 719-756 (2050)
438 3lv8_A DTMP kinase, thymidylat 93.6 0.035 1.2E-06 53.3 3.2 27 66-92 26-52 (236)
439 3c5c_A RAS-like protein 12; GD 93.6 0.029 1E-06 50.8 2.6 23 69-91 23-45 (187)
440 3def_A T7I23.11 protein; chlor 93.6 0.032 1.1E-06 54.0 2.9 23 69-91 38-60 (262)
441 1gwn_A RHO-related GTP-binding 93.6 0.027 9.2E-07 52.2 2.3 23 69-91 30-52 (205)
442 3exa_A TRNA delta(2)-isopenten 93.6 0.04 1.4E-06 55.1 3.6 26 67-92 3-28 (322)
443 1njg_A DNA polymerase III subu 93.5 0.04 1.4E-06 51.0 3.4 23 69-91 47-69 (250)
444 3sr0_A Adenylate kinase; phosp 93.5 0.038 1.3E-06 51.8 3.2 22 69-90 2-23 (206)
445 2fh5_B SR-beta, signal recogni 93.5 0.03 1E-06 51.6 2.5 23 69-91 9-31 (214)
446 1h65_A Chloroplast outer envel 93.5 0.034 1.2E-06 54.0 2.9 23 69-91 41-63 (270)
447 4djt_A GTP-binding nuclear pro 93.4 0.019 6.5E-07 53.2 1.0 23 69-91 13-35 (218)
448 2gco_A H9, RHO-related GTP-bin 93.4 0.03 1E-06 51.4 2.3 22 70-91 28-49 (201)
449 2ocp_A DGK, deoxyguanosine kin 93.4 0.042 1.4E-06 52.2 3.4 27 66-92 1-27 (241)
450 1sky_E F1-ATPase, F1-ATP synth 93.4 0.045 1.5E-06 57.7 3.8 36 55-91 140-175 (473)
451 2g3y_A GTP-binding protein GEM 93.4 0.04 1.4E-06 51.6 3.1 23 69-91 39-61 (211)
452 2h92_A Cytidylate kinase; ross 93.3 0.037 1.3E-06 51.5 2.8 25 67-91 3-27 (219)
453 4tmk_A Protein (thymidylate ki 93.3 0.043 1.5E-06 51.7 3.2 27 66-92 2-28 (213)
454 3crm_A TRNA delta(2)-isopenten 93.3 0.042 1.4E-06 55.2 3.2 25 68-92 6-30 (323)
455 3tmk_A Thymidylate kinase; pho 93.3 0.043 1.5E-06 51.9 3.1 29 65-93 3-31 (216)
456 3ld9_A DTMP kinase, thymidylat 93.3 0.049 1.7E-06 51.8 3.5 28 65-92 19-46 (223)
457 3tqf_A HPR(Ser) kinase; transf 93.3 0.09 3.1E-06 48.0 5.1 34 55-89 5-38 (181)
458 2atx_A Small GTP binding prote 93.2 0.035 1.2E-06 50.3 2.3 22 69-90 20-41 (194)
459 1p5z_B DCK, deoxycytidine kina 93.2 0.033 1.1E-06 53.8 2.2 28 65-92 22-49 (263)
460 2x77_A ADP-ribosylation factor 93.1 0.028 9.7E-07 50.7 1.6 22 69-90 24-45 (189)
461 2yc2_C IFT27, small RAB-relate 93.1 0.02 7E-07 52.2 0.5 22 69-90 22-43 (208)
462 3euj_A Chromosome partition pr 93.0 0.14 4.9E-06 54.1 7.0 71 172-255 377-464 (483)
463 3cpj_B GTP-binding protein YPT 92.9 0.043 1.5E-06 51.3 2.6 23 69-91 15-37 (223)
464 2hf9_A Probable hydrogenase ni 92.9 0.049 1.7E-06 50.7 3.0 23 68-90 39-61 (226)
465 2hup_A RAS-related protein RAB 92.9 0.04 1.4E-06 50.6 2.3 23 69-91 31-53 (201)
466 4dcu_A GTP-binding protein ENG 92.9 0.041 1.4E-06 57.9 2.6 22 69-90 25-46 (456)
467 1sxj_D Activator 1 41 kDa subu 92.9 0.012 3.9E-07 59.0 -1.6 42 192-241 133-174 (353)
468 1puj_A YLQF, conserved hypothe 92.9 0.067 2.3E-06 52.6 4.0 26 68-93 121-146 (282)
469 4a9a_A Ribosome-interacting GT 92.7 0.071 2.4E-06 54.7 4.1 37 69-105 74-121 (376)
470 3foz_A TRNA delta(2)-isopenten 92.7 0.065 2.2E-06 53.5 3.5 25 67-91 10-34 (316)
471 1ypw_A Transitional endoplasmi 92.7 0.015 5.3E-07 65.6 -1.1 32 60-91 504-535 (806)
472 4gzl_A RAS-related C3 botulinu 92.6 0.046 1.6E-06 50.3 2.3 22 69-90 32-53 (204)
473 2orw_A Thymidine kinase; TMTK, 92.5 0.068 2.3E-06 49.0 3.2 53 192-255 76-137 (184)
474 3q3j_B RHO-related GTP-binding 92.5 0.052 1.8E-06 50.5 2.5 22 69-90 29-50 (214)
475 2j0v_A RAC-like GTP-binding pr 92.5 0.049 1.7E-06 50.1 2.3 22 69-90 11-32 (212)
476 3eph_A TRNA isopentenyltransfe 92.3 0.069 2.4E-06 55.2 3.3 25 68-92 3-27 (409)
477 2vhj_A Ntpase P4, P4; non- hyd 92.3 0.083 2.8E-06 53.0 3.8 33 57-89 113-145 (331)
478 3dm5_A SRP54, signal recogniti 92.1 0.049 1.7E-06 57.1 2.0 27 66-92 99-125 (443)
479 2chg_A Replication factor C sm 92.1 0.072 2.5E-06 48.6 3.0 23 69-91 40-62 (226)
480 3gmt_A Adenylate kinase; ssgci 92.1 0.073 2.5E-06 50.8 3.0 22 69-90 10-31 (230)
481 3syl_A Protein CBBX; photosynt 92.1 0.075 2.6E-06 52.1 3.2 26 66-91 66-91 (309)
482 1wxq_A GTP-binding protein; st 92.1 0.067 2.3E-06 55.3 2.9 41 154-198 181-221 (397)
483 1mky_A Probable GTP-binding pr 92.0 0.14 4.9E-06 53.3 5.4 23 69-91 3-25 (439)
484 2x2e_A Dynamin-1; nitration, h 92.0 0.052 1.8E-06 55.0 1.9 23 69-91 33-55 (353)
485 3uk6_A RUVB-like 2; hexameric 91.9 0.062 2.1E-06 54.1 2.4 37 65-101 68-104 (368)
486 3p32_A Probable GTPase RV1496/ 91.9 0.071 2.4E-06 54.1 2.8 26 66-91 78-103 (355)
487 1lnz_A SPO0B-associated GTP-bi 91.8 0.12 3.9E-06 52.4 4.3 33 58-90 149-181 (342)
488 2hjg_A GTP-binding protein ENG 91.6 0.073 2.5E-06 55.5 2.6 22 69-90 5-26 (436)
489 2r62_A Cell division protease 91.6 0.044 1.5E-06 52.7 0.9 27 62-90 41-67 (268)
490 3th5_A RAS-related C3 botulinu 90.9 0.033 1.1E-06 51.0 0.0 21 69-89 32-52 (204)
491 1d2n_A N-ethylmaleimide-sensit 91.5 0.094 3.2E-06 50.6 3.2 26 65-90 62-87 (272)
492 3r7w_A Gtpase1, GTP-binding pr 91.5 0.12 4E-06 51.3 3.9 24 68-91 4-27 (307)
493 3pvs_A Replication-associated 91.3 0.059 2E-06 56.6 1.5 34 59-92 40-75 (447)
494 2qgz_A Helicase loader, putati 91.3 0.11 3.8E-06 51.6 3.4 24 67-90 152-175 (308)
495 1f5n_A Interferon-induced guan 91.2 0.086 3E-06 57.2 2.8 33 56-91 30-62 (592)
496 3t15_A Ribulose bisphosphate c 91.2 0.093 3.2E-06 51.7 2.8 24 68-91 37-60 (293)
497 2v3c_C SRP54, signal recogniti 91.2 0.027 9.2E-07 59.0 -1.3 25 68-92 100-124 (432)
498 1lw7_A Transcriptional regulat 91.1 0.12 4E-06 52.6 3.5 29 174-202 296-329 (365)
499 3l0i_B RAS-related protein RAB 91.1 0.023 8E-07 51.9 -1.6 23 69-91 35-57 (199)
500 3gj0_A GTP-binding nuclear pro 91.1 0.067 2.3E-06 49.7 1.5 21 70-90 18-39 (221)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=8.6e-52 Score=426.16 Aligned_cols=223 Identities=15% Similarity=0.180 Sum_probs=199.9
Q ss_pred CcCeEEEEeeEEeCCCC--CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---h--
Q psy10236 36 FFPHLQVRGLEVPPSSK--NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---N-- 108 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~--~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~-- 108 (515)
..++|+++||+++|..+ ...+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. .
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 44689999999998432 2569999999999999999999999999999999999999999999999999842 1
Q ss_pred -hhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHH
Q psy10236 109 -ALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIAC 187 (515)
Q Consensus 109 -~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~ 187 (515)
..++++|||+|++.+++.+||.||+.++...+.. .+.+.+++++++++.+||.+..++++++|||||||||+|||
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~----~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIAr 176 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT----PKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIAR 176 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCC----CHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHH
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 2467899999999999999999999998765432 23556678999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCcc
Q psy10236 188 CLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRR 266 (515)
Q Consensus 188 aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~ 266 (515)
||+.+|++|||||||+|||+.++..++++|++++++ | .|||+++|+. .++.++||||++|++|++++.|+++
T Consensus 177 AL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g------~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ 249 (366)
T 3tui_C 177 ALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG------LTILLITHEM-DVVKRICDCVAVISNGELIEQDTVS 249 (366)
T ss_dssp HTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC------CEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHH
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCC------CEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999765 5 8999999984 5788999999999999999999998
Q ss_pred chH
Q psy10236 267 DML 269 (515)
Q Consensus 267 ~~~ 269 (515)
++.
T Consensus 250 ev~ 252 (366)
T 3tui_C 250 EVF 252 (366)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 2
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=4.5e-51 Score=405.57 Aligned_cols=219 Identities=19% Similarity=0.268 Sum_probs=195.5
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC--h---hhhcc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP--L---NALKR 112 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~--~---~~~~~ 112 (515)
++|+++||+++| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. . ..+++
T Consensus 23 ~~l~i~~l~~~y--~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 23 QMIDVHQLKKSF--GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp CSEEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred heEEEEeEEEEE--CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 479999999988 5677999999999999999999999999999999999999999999999999873 1 23467
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHh-hcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHh
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYS-HLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMS 191 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~ 191 (515)
.++||+|++.+++.+||+||+.+.. ..... ...+.+++++++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~ 176 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKW----PREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAM 176 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCC----CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHC
Confidence 7999999999999999999999864 33221 123445678899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+|++|||||||+|||+.++..+.+.|++++++| +|||+++|+. +++.++||++++|++|++++.|+++++.
T Consensus 177 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g------~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 177 EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG------MTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT------CEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC------CEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999998766 8999999984 5788899999999999999999988764
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.6e-51 Score=423.90 Aligned_cols=221 Identities=19% Similarity=0.278 Sum_probs=197.8
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeC----Ch-hhhcc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI----PL-NALKR 112 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~----~~-~~~~~ 112 (515)
++|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|+++ .. ...++
T Consensus 3 ~~l~i~~ls~~y--~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 3 AALHIGHLSKSF--QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CCEEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred cEEEEEeEEEEE--CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 369999999988 567899999999999999999999999999999999999999999999999987 21 23467
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
.+|||+|+..++|.+||.||+.|+...+.. .+.+.+++++++++.+||.+..++++++|||||||||+|||||+.+
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~----~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~ 156 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKG----RTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPD 156 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSC----CSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCC----ChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 899999999999999999999997654332 1345667899999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
|++|||||||+|||+..+.++.+.|+++.++. +.|+|+++|+. .++..+||||++|++|+++..|+++++..
T Consensus 157 P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~-----g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 157 PELILLDEPFSALDEQLRRQIREDMIAALRAN-----GKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT-----TCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-----CCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999999999888875532 38999999984 68999999999999999999999988753
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.3e-51 Score=408.99 Aligned_cols=221 Identities=17% Similarity=0.236 Sum_probs=195.9
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC--h---hhhcc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP--L---NALKR 112 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~--~---~~~~~ 112 (515)
++|+++||+++|. +++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. . ..+++
T Consensus 6 ~~l~i~~ls~~y~-~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 6 YILKVEELNYNYS-DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEEECT-TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred cEEEEEEEEEEEC-CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 5799999999984 3456999999999999999999999999999999999999999999999999983 2 23567
Q ss_pred ceEEEecCC-CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHh
Q psy10236 113 RLVYVRSQS-FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMS 191 (515)
Q Consensus 113 ~i~yv~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~ 191 (515)
.+|||+|++ ..+..+||.||+.+....... ...+.+++++++++.+||.+..++++++|||||||||+|||||+.
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~ 160 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKL----PEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 160 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCC----CHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTT
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHc
Confidence 899999986 344578999999998765321 234556789999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHH-hCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWA-SGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
+|++|||||||+|||+.++..+++.|++++ ++| +|||+++|+.. ++.++||||++|++|++++.|+++++..
T Consensus 161 ~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g------~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG------ITIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHC------CEEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCC------CEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999997 446 89999999864 6888999999999999999999988753
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=4.7e-51 Score=423.12 Aligned_cols=219 Identities=17% Similarity=0.263 Sum_probs=200.3
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYV 117 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv 117 (515)
+|+++||+++| +++.+|+||||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. ...++.+|||
T Consensus 3 ~l~~~~l~~~y--g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~V 80 (381)
T 3rlf_A 3 SVQLQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80 (381)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEE
T ss_pred EEEEEeEEEEE--CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEE
Confidence 59999999988 56789999999999999999999999999999999999999999999999999853 2345789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|+..++|.+||.||+.|+...+.. .+.+.+++++++++.+||.+..++++++|||||||||+|||||+.+|++||
T Consensus 81 fQ~~~l~p~ltV~eni~~~~~~~~~----~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLL 156 (381)
T 3rlf_A 81 FQSYALYPHLSVAENMSFGLKLAGA----KKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL 156 (381)
T ss_dssp CTTCCCCTTSCHHHHHTHHHHHTTC----CHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred ecCCcCCCCCCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999998766532 245567789999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
|||||+|||+..+.++.+.|+++.++ | .|+|+++|+. .++..+||||++|++|+++..|+++++..
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~l~~~~g------~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 157 LDEPLSNLDAALRVQMRIEISRLHKRLG------RTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHHC------CEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHhCC------CEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999999999765 5 8999999974 68999999999999999999999998753
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=6e-51 Score=404.86 Aligned_cols=219 Identities=20% Similarity=0.242 Sum_probs=195.3
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----------
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---------- 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---------- 107 (515)
++|+++||+++| +++.+|+||||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 5 ~~l~i~~l~~~y--~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 5 NKLHVIDLHKRY--GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CCEEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred ceEEEeeEEEEE--CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 479999999988 56789999999999999999999999999999999999999999999999998751
Q ss_pred ------hhhccceEEEecCCCCCCCCCHHHHHHHHh-hcCCCCCCCchhhHHHHHHHHHHHcCCccc-ccCcccCCChHH
Q psy10236 108 ------NALKRRLVYVRSQSFLSPELNVAQTLTFYS-HLRRPPKHSIKVTTSEQMGLLIEELGLTQV-LSTRVGRLTTSE 179 (515)
Q Consensus 108 ------~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSGGe 179 (515)
...++.++||+|++.+++.+||.||+.+.. ..+.. .....+++++++++.+||.+. .++++++|||||
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq 158 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL----SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQ 158 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCC----CHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHH
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCC----CHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHH
Confidence 134667999999999999999999999854 33221 123445678999999999998 999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 180 LKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 180 rqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++| +|||+++|+. .++..+|||+++|++|++
T Consensus 159 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g------~tvi~vtHd~-~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 159 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEG------KTMVVVTHEM-GFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT------CCEEEECSCH-HHHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC------CEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999998766 8999999984 578889999999999999
Q ss_pred EEecCccchH
Q psy10236 260 MYSGKRRDML 269 (515)
Q Consensus 260 v~~G~~~~~~ 269 (515)
++.|+++++.
T Consensus 232 ~~~g~~~~~~ 241 (262)
T 1b0u_A 232 EEEGDPEQVF 241 (262)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999988764
No 7
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=9.1e-51 Score=404.27 Aligned_cols=218 Identities=18% Similarity=0.240 Sum_probs=196.5
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i 114 (515)
++|+++|+++.| +++.+|+||||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ...++.+
T Consensus 10 ~~l~~~~l~~~~--~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 10 ALLEASHLHYHV--QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp CEEEEEEEEEEE--TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred ceEEEEeEEEEe--CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 589999999987 56789999999999999999999999999999999999999999999999999843 3456779
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHh---
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMS--- 191 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~--- 191 (515)
+|++|+..+++.+||.||+.++..... ....+++++++++.+||.+..++++++|||||||||+|||||+.
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~ 161 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYG------GSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQ 161 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSC------STTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCC
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcC------cHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 999999988889999999998754331 12345678899999999999999999999999999999999999
Q ss_pred ---CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 192 ---HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 192 ---~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
+|++|||||||+|||+.++.++.+.|+++++++ ++|||+++|+. .++.++|||+++|++|++++.|+++++
T Consensus 162 ~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~-----~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 162 PQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQE-----PLAVCCVLHDL-NLAALYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp SSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHS-----SEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred cCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcC-----CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999998764 37999999984 578889999999999999999999876
Q ss_pred H
Q psy10236 269 L 269 (515)
Q Consensus 269 ~ 269 (515)
.
T Consensus 236 ~ 236 (266)
T 4g1u_C 236 L 236 (266)
T ss_dssp C
T ss_pred h
Confidence 4
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.3e-50 Score=393.54 Aligned_cols=214 Identities=22% Similarity=0.288 Sum_probs=190.3
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---h---hhc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---N---ALK 111 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~---~~~ 111 (515)
++|+++|++++| +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. . ..+
T Consensus 3 ~~l~~~~l~~~y--~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 3 EILRAENIKKVI--RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEEE--TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred cEEEEEeEEEEE--CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 479999999988 45789999999999999999999999999999999999999999999999998742 1 122
Q ss_pred -cceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH
Q psy10236 112 -RRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM 190 (515)
Q Consensus 112 -~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~ 190 (515)
+.++||+|++.+++.+||.||+.+....+.. .....+++++++++.+||.+..++++++|||||||||+|||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGK----PKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALA 156 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTT
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCC----CHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 6799999999999999999999987654321 12344567899999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCc
Q psy10236 191 SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKR 265 (515)
Q Consensus 191 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~ 265 (515)
.+|++|||||||+|||+.++..+.+.|++++++| +|||+++|+. ..+ ++||++++|++|++++.|+.
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g------~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINEGG------TSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT------CEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEeee
Confidence 9999999999999999999999999999998766 8999999985 345 89999999999999998863
No 9
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.2e-50 Score=396.55 Aligned_cols=221 Identities=15% Similarity=0.187 Sum_probs=190.5
Q ss_pred eEEEEeeEEeCCCC--CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hh----
Q psy10236 39 HLQVRGLEVPPSSK--NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NA---- 109 (515)
Q Consensus 39 ~L~v~~l~~~~~~~--~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~---- 109 (515)
+|+++||+++|..+ ++.+|+||||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 48999999988422 2469999999999999999999999999999999999999999999999998742 11
Q ss_pred hccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccc-ccCcccCCChHHHHHHHHHHH
Q psy10236 110 LKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV-LSTRVGRLTTSELKRLSIACC 188 (515)
Q Consensus 110 ~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSGGerqRv~IA~a 188 (515)
.++.++||+|++.+++.+||.||+.++...+... .....+..+++.++++.+||.+. .++++.+|||||||||+||||
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra 159 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRG-AMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA 159 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSS-CCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhcc-CCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 2346999999999999999999999876543211 11234556778899999999875 599999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccc
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRD 267 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~ 267 (515)
|+.+|++|||||||+|||+.++.++.+.|++++++ | +|||+++|+.. +.++||||++|++|+++..+++++
T Consensus 160 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g------~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 160 LANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG------KTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC------CEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC------CEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhh
Confidence 99999999999999999999999999999999765 5 89999999853 568999999999999999998876
Q ss_pred h
Q psy10236 268 M 268 (515)
Q Consensus 268 ~ 268 (515)
+
T Consensus 232 ~ 232 (235)
T 3tif_A 232 F 232 (235)
T ss_dssp -
T ss_pred h
Confidence 4
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-50 Score=399.91 Aligned_cols=221 Identities=17% Similarity=0.270 Sum_probs=196.9
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccce
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRL 114 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i 114 (515)
.++|+++||+++| +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...++.+
T Consensus 13 ~~~l~i~~l~~~y--~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 13 MGAVVVKDLRKRI--GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp -CCEEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CCeEEEEEEEEEE--CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcE
Confidence 3579999999988 46789999999999999999999999999999999999999999999999998743 3456789
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
+|++|++.+++.+||+||+.+....+.. ...+.+++++++++.+||.+..++++++|||||||||+|||||+.+|+
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 166 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYAS----SSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPR 166 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCC----ChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999987644321 123345678899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
+|||||||+|||+.++..+.+.|++++++| +|||+++|++ .++..+||++++|++|++++.|+++++..
T Consensus 167 lllLDEPts~LD~~~~~~l~~~l~~l~~~g------~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 167 LAILDEPTSGLDVLNAREVRKILKQASQEG------LTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTT------CEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHhCC------CEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999998666 8999999985 56888999999999999999999887754
No 11
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.5e-50 Score=401.10 Aligned_cols=221 Identities=14% Similarity=0.179 Sum_probs=194.0
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hhhccc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~~~~~ 113 (515)
++|+++||+++| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...++.
T Consensus 6 ~~l~i~~l~~~y--~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 6 EILRTENIVKYF--GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEEE--TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred cEEEEeeeEEEE--CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 479999999988 56789999999999999999999999999999999999999999999999998743 224567
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhc-CCCC--------CCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHL-RRPP--------KHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLS 184 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~-~~~~--------~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~ 184 (515)
++||+|++.+++.+||.||+.++... .... ........+++++++++.+||.+..++++++|||||||||+
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~ 163 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE 163 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHH
Confidence 99999999999999999999886532 1110 00012334567889999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||||+.+|++|||||||+|||+.++..+.+.|++++++| +|||+++|+.. ++.++|||+++|++|++++.|+
T Consensus 164 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g------~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~ 236 (257)
T 1g6h_A 164 IGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG------ITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGR 236 (257)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT------CEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC------CEEEEEecCHH-HHHHhCCEEEEEECCEEEEEeC
Confidence 9999999999999999999999999999999999998766 89999999864 6888999999999999999998
Q ss_pred ccc
Q psy10236 265 RRD 267 (515)
Q Consensus 265 ~~~ 267 (515)
+++
T Consensus 237 ~~~ 239 (257)
T 1g6h_A 237 GEE 239 (257)
T ss_dssp SHH
T ss_pred HHH
Confidence 877
No 12
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.2e-50 Score=413.34 Aligned_cols=220 Identities=20% Similarity=0.247 Sum_probs=198.6
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVY 116 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~y 116 (515)
++|+++||+++|. +++.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. ...++.++|
T Consensus 13 ~~l~~~~l~~~y~-g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 91 (355)
T 1z47_A 13 MTIEFVGVEKIYP-GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGL 91 (355)
T ss_dssp EEEEEEEEEECCT-TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEE
T ss_pred ceEEEEEEEEEEc-CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEE
Confidence 4799999999873 45679999999999999999999999999999999999999999999999999843 234678999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
|+|+..++|.+||+||+.|+...+.. .+.+.+++++++++.+||.+..++++++|||||||||+|||||+.+|++|
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l~~~~~----~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 167 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGLREKRV----PKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVL 167 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999998765432 13445678999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
||||||+|||+.++.++.+.|++++++ | .|+|+++|+. .++..+|||+++|++|+++..|+++++.
T Consensus 168 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g------~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 168 LFDEPFAAIDTQIRRELRTFVRQVHDEMG------VTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp EEESTTCCSSHHHHHHHHHHHHHHHHHHT------CEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcC------CEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999765 5 8999999984 5789999999999999999999998875
No 13
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.7e-50 Score=394.32 Aligned_cols=219 Identities=20% Similarity=0.277 Sum_probs=192.7
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hh-hcc
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NA-LKR 112 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~-~~~ 112 (515)
.++|+++||+++| +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .. .++
T Consensus 4 ~~~l~~~~l~~~y--~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (240)
T 1ji0_A 4 DIVLEVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp SEEEEEEEEEEEE--TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred CceEEEEeEEEEE--CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhC
Confidence 3579999999988 45779999999999999999999999999999999999999999999999998842 12 345
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcC-CcccccCcccCCChHHHHHHHHHHHHHh
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELG-LTQVLSTRVGRLTTSELKRLSIACCLMS 191 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~v~~LSGGerqRv~IA~aL~~ 191 (515)
.++|++|++.+++.+||.||+.++..... .....+++++++++.++ |.+..++++++|||||||||+|||||+.
T Consensus 82 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 82 GIALVPEGRRIFPELTVYENLMMGAYNRK-----DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCC-----CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred CEEEEecCCccCCCCcHHHHHHHhhhcCC-----CHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 69999999999999999999988642111 12234567888999995 9989999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+|++|||||||+|||+.++..+.+.|++++++| +|||+++|++ .++.++|||+++|++|++++.|+++++.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g------~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG------TTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTT------CCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC------CEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999999999998765 8999999984 4688999999999999999999887654
No 14
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.4e-50 Score=413.32 Aligned_cols=219 Identities=16% Similarity=0.262 Sum_probs=198.0
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYV 117 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv 117 (515)
+|+++|++++| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. ...++.++||
T Consensus 3 ~l~~~~l~~~y--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (362)
T 2it1_A 3 EIKLENIVKKF--GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV 80 (362)
T ss_dssp CEEEEEEEEES--SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEeEEEEE--CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEE
Confidence 59999999988 56779999999999999999999999999999999999999999999999999843 2345789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|+..++|++||.||+.|+...+.. .+.+.+++++++++.+||.+..++++++|||||||||+|||||+.+|++||
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~----~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 156 (362)
T 2it1_A 81 FQNWALYPHMTVYKNIAFPLELRKA----PREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLL 156 (362)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999998765432 134456789999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
|||||+|||+..+.++.+.|+++.++ | .|+|+++|+. .++..+||||++|++|+++..|+++++..
T Consensus 157 LDEP~s~LD~~~r~~l~~~l~~l~~~~g------~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 157 LDEPLSNLDALLRLEVRAELKRLQKELG------ITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp EESGGGGSCHHHHHHHHHHHHHHHHHHT------CEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHHHHhCC------CEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999764 5 8999999984 57899999999999999999999988753
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=4.8e-50 Score=413.81 Aligned_cols=219 Identities=21% Similarity=0.257 Sum_probs=196.7
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYV 117 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv 117 (515)
+|+++|++++| +++.+|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.++||
T Consensus 3 ~l~~~~l~~~y--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (359)
T 2yyz_A 3 SIRVVNLKKYF--GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV 80 (359)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEEEEEEE--CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEE
Confidence 59999999988 56789999999999999999999999999999999999999999999999999843 2346789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|+..++|++||+||+.|+...+.. .+.+.+++++++++.+||.+..++++++|||||||||+|||||+.+|++||
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~----~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLL 156 (359)
T 2yyz_A 81 FQNYALYPHMTVFENIAFPLRARRI----SKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLL 156 (359)
T ss_dssp CSSCCCCTTSCHHHHHHGGGSSSCS----HHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999987644321 123335678999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
|||||+|||+..+.++.+.|+++.++ | .|+|+++|+. .++..+|||+++|++|+++..|+++++..
T Consensus 157 LDEP~s~LD~~~r~~l~~~l~~l~~~~g------~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 157 FDEPLSNLDANLRMIMRAEIKHLQQELG------ITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHHC------CEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhcC------CEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999764 5 8999999984 57889999999999999999999988753
No 16
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=9e-50 Score=414.16 Aligned_cols=219 Identities=18% Similarity=0.247 Sum_probs=197.8
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-------hhhc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-------NALK 111 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-------~~~~ 111 (515)
+|+++||+++| +++.+|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...+
T Consensus 3 ~l~~~~l~~~y--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~ 80 (372)
T 1g29_1 3 GVRLVDVWKVF--GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (372)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred EEEEEeEEEEE--CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhH
Confidence 59999999988 56789999999999999999999999999999999999999999999999988732 2245
Q ss_pred cceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHh
Q psy10236 112 RRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMS 191 (515)
Q Consensus 112 ~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~ 191 (515)
+.++||+|+..++|++||.||+.|+...+.. .+.+.+++++++++.+||.+..++++++|||||||||+|||||+.
T Consensus 81 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~----~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 156 (372)
T 1g29_1 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKV----PRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR 156 (372)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 7899999999999999999999998765432 134456789999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
+|++|||||||+|||+..+.++.+.|+++.++ | .|+|+++|+. .++..+|||+++|++|+++..|+++++..
T Consensus 157 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g------~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 157 KPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG------VTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp CCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT------CEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcC------CEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999764 5 8999999984 57899999999999999999999988753
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=5.2e-50 Score=413.41 Aligned_cols=218 Identities=18% Similarity=0.248 Sum_probs=196.8
Q ss_pred eEEEEeeEEeCCCCCcc--eeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh------hhh
Q psy10236 39 HLQVRGLEVPPSSKNKC--FVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL------NAL 110 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~--iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~------~~~ 110 (515)
+|+++||+++| +++. +|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...
T Consensus 3 ~l~i~~l~~~y--~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVF--KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEE--GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEE--CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 59999999988 4567 9999999999999999999999999999999999999999999999988732 235
Q ss_pred ccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH
Q psy10236 111 KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM 190 (515)
Q Consensus 111 ~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~ 190 (515)
++.++||+|+..++|++||+||+.|+...+.. .+.+.+++++++++.+||.+..++++++|||||||||+|||||+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~----~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~ 156 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKM----SKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALV 156 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSC----CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999987654321 23445678999999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 191 SHADILLLDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 191 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
.+|++|||||||+|||+..+.++.+.|+++.++ | .|+|+++|+. .++..+|||+++|++|+++..|+++++.
T Consensus 157 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g------~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 157 KDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG------VTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp TCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC------CEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999764 5 8999999984 5789999999999999999999998875
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1e-49 Score=413.19 Aligned_cols=219 Identities=16% Similarity=0.238 Sum_probs=190.8
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYV 117 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv 117 (515)
+|+++||+++| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. ...++.++||
T Consensus 11 ~l~~~~l~~~y--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 88 (372)
T 1v43_A 11 EVKLENLTKRF--GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 88 (372)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred eEEEEEEEEEE--CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEE
Confidence 69999999988 56779999999999999999999999999999999999999999999999999843 2345789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|+..++|++||+||+.|+...+.. .+.+.+++++++++.+||.+..++++++|||||||||+|||||+.+|++||
T Consensus 89 ~Q~~~l~~~ltv~eni~~~~~~~~~----~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 164 (372)
T 1v43_A 89 FQSYAVWPHMTVYENIAFPLKIKKF----PKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL 164 (372)
T ss_dssp EC------CCCHHHHHHTTCC--CC----CHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEE
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999987543321 234456789999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
|||||+|||+..+.++.+.|+++.++ | .|+|+++|+. .++..+||||++|++|+++..|+++++..
T Consensus 165 LDEP~s~LD~~~r~~l~~~l~~l~~~~g------~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 165 MDEPLSNLDAKLRVAMRAEIKKLQQKLK------VTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHHT------CEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhCC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999765 5 7999999984 57889999999999999999999988753
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.7e-49 Score=408.27 Aligned_cols=215 Identities=20% Similarity=0.286 Sum_probs=193.8
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYV 117 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv 117 (515)
||+++|++++| +++ +|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ...++.++||
T Consensus 1 ml~~~~l~~~y--~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 1 MIEIESLSRKW--KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp CEEEEEEEEEC--SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred CEEEEEEEEEE--CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence 58999999988 455 9999999999999999999999999999999999999999999999998853 2346789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|+..++|++||+||+.|+...+... + . ++++++++.+||.+..++++++|||||||||+|||||+.+|++||
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~----~--~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLL 150 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIK----D--P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILL 150 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCC----C--H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCC----H--H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999986543321 1 1 678899999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
|||||+|||+..+.++.+.|++++++. +.|+|+++|+. .++..+|||+++|++|+++..|+++++.
T Consensus 151 LDEP~s~LD~~~~~~l~~~l~~l~~~~-----g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 151 LDEPLSALDPRTQENAREMLSVLHKKN-----KLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp EESSSTTSCHHHHHHHHHHHHHHHHHT-----TCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHHHHhc-----CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999997642 28999999984 5789999999999999999999998875
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=4.6e-49 Score=392.24 Aligned_cols=220 Identities=20% Similarity=0.253 Sum_probs=193.0
Q ss_pred eEEEEeeEEeCCCCC---cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceE
Q psy10236 39 HLQVRGLEVPPSSKN---KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~---~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~ 115 (515)
+|+++|++++|..++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....+++.++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999984223 57999999999999999999999999999999999999999999999999886445567899
Q ss_pred EEecCC-CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc--ccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 116 YVRSQS-FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT--QVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 116 yv~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
||+|++ ..++.+||+||+.++.... .. ....+++++++++.+||. +..++++++|||||||||+|||||+.+
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~-~~----~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~ 156 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNF-YP----DRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHE 156 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTT-CT----TSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhc-CC----HHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 999985 5667899999999864322 11 122345688999999999 999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHH
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~ 270 (515)
|++|||||||+|||+.++..+.+.|++++++| +|||+++|++. ++..+||++++|++|++++.|+++++..
T Consensus 157 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g------~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 157 PDILILDEPLVGLDREGKTDLLRIVEKWKTLG------KTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT------CEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHcC------CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999997666 89999999864 6778999999999999999999887753
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-49 Score=387.65 Aligned_cols=213 Identities=22% Similarity=0.296 Sum_probs=189.4
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYV 117 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv 117 (515)
+++++|++++| ++ +|+|+||++++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...++.++|+
T Consensus 1 ml~~~~l~~~y--~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 1 MFLKVRAEKRL--GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CCEEEEEEEEE--TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred CEEEEEEEEEe--CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE
Confidence 47899999988 33 59999999999 9999999999999999999999999999999999998743 2346789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|++.+++.+||+||+.+....+. ....+++++++++.+||.+..++++++|||||||||+|||||+.+|++||
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll 149 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVE------RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLL 149 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSC------HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBE
T ss_pred cCCCccCCCCcHHHHHHHHHHHcC------CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999999999999999988643221 11235678899999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
|||||+|||+.++..+.+.|++++++ | +|||+++|+. .++..+||++++|++|++++.|+++++.
T Consensus 150 LDEPts~LD~~~~~~~~~~l~~l~~~~g------~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 150 LDEPLSAVDLKTKGVLMEELRFVQREFD------VPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp EESTTSSCCHHHHHHHHHHHHHHHHHHT------CCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999764 5 7999999984 5688999999999999999999988765
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.3e-49 Score=396.70 Aligned_cols=223 Identities=18% Similarity=0.237 Sum_probs=189.4
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC-----hhhhcc
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP-----LNALKR 112 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~-----~~~~~~ 112 (515)
++|+++||+++| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ...+++
T Consensus 20 ~~l~~~~l~~~y--~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 20 MLIQLDQIGRMK--QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEEE--TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred ceEEEEeEEEEE--CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 479999999988 4578999999999999999999999999999999999999999999999998874 234567
Q ss_pred ceEEEecCCCC--CCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH
Q psy10236 113 RLVYVRSQSFL--SPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM 190 (515)
Q Consensus 113 ~i~yv~q~~~~--~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~ 190 (515)
.++||+|++.+ .+.+||+||+.+..............+..++++++++.+||.+..++++++|||||||||+|||||+
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~ 177 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALM 177 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh
Confidence 89999998653 3457999999875321100000011234567889999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEE--EEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 191 SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMV--ILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 191 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~ti--iis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
.+|++|||||||+|||+.++..+.+.|++++++| +|| |+++|+. .++.++||++++|++|++++.|+++++
T Consensus 178 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g------~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 178 GQPQVLILDEPAAGLDFIARESLLSILDSLSDSY------PTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHC------TTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCC------CEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999997666 788 9999985 467889999999999999999988765
Q ss_pred H
Q psy10236 269 L 269 (515)
Q Consensus 269 ~ 269 (515)
.
T Consensus 251 ~ 251 (279)
T 2ihy_A 251 L 251 (279)
T ss_dssp C
T ss_pred h
Confidence 3
No 23
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.7e-47 Score=378.12 Aligned_cols=212 Identities=17% Similarity=0.234 Sum_probs=185.0
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYV 117 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv 117 (515)
++|+++|++++|. +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|. .++.++|+
T Consensus 3 ~~l~i~~l~~~y~-~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~----------~~~~i~~v 71 (253)
T 2nq2_C 3 KALSVENLGFYYQ-AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE----------VYQSIGFV 71 (253)
T ss_dssp EEEEEEEEEEEET-TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE----------ECSCEEEE
T ss_pred ceEEEeeEEEEeC-CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----------EeccEEEE
Confidence 3799999999883 156799999999999999999999999999999999999999999998 25679999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|++.+++.+||+||+.++...............+++++++++.+||.+..++++++|||||||||+|||||+.+|++||
T Consensus 72 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lll 151 (253)
T 2nq2_C 72 PQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLIL 151 (253)
T ss_dssp CSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEE
T ss_pred cCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999864322100000112345678899999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
|||||+|||+.++..+.+.|++++++ | +|||+++|+. .++.++||++++|++|+ ++.|+++++
T Consensus 152 LDEPts~LD~~~~~~l~~~l~~l~~~~g------~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 152 LDEPTSALDLANQDIVLSLLIDLAQSQN------MTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp ESSSSTTSCHHHHHHHHHHHHHHHHTSC------CEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcC------CEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 99999999999999999999999876 5 8999999985 56788999999999999 999987765
No 24
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.4e-47 Score=381.72 Aligned_cols=225 Identities=18% Similarity=0.179 Sum_probs=188.5
Q ss_pred CcCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC--CCCeeEEEECCeeCCh---hhh
Q psy10236 36 FFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN--DAKAFQVILNGHSIPL---NAL 110 (515)
Q Consensus 36 ~~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~--~~~~G~I~~~G~~~~~---~~~ 110 (515)
..++|+++||+++| +++.+|+||||+|++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++.. ...
T Consensus 17 ~~~~l~~~~l~~~y--~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 94 (267)
T 2zu0_C 17 GSHMLSIKDLHVSV--EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94 (267)
T ss_dssp ---CEEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHH
T ss_pred CCceEEEEeEEEEE--CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 34579999999988 5678999999999999999999999999999999999994 6899999999998742 222
Q ss_pred -ccceEEEecCCCCCCCCCHHHHHHHHhh-c---CCCCCCCchhhHHHHHHHHHHHcCCc-ccccCccc-CCChHHHHHH
Q psy10236 111 -KRRLVYVRSQSFLSPELNVAQTLTFYSH-L---RRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVG-RLTTSELKRL 183 (515)
Q Consensus 111 -~~~i~yv~q~~~~~~~lTv~e~l~~~~~-~---~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~-~LSGGerqRv 183 (515)
++.++|++|++.+++.+||.||+.+... . .... .....+.+++++++++.+||. +..+++++ +|||||||||
T Consensus 95 ~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv 173 (267)
T 2zu0_C 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQE-TLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN 173 (267)
T ss_dssp HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCC-CCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHH
T ss_pred hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccc-cCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence 3459999999999999999999987541 1 1111 011233456788999999996 57899998 5999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhh-ccEEEEEeCCeEEEe
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTM-ISRVLLVSGGRTMYS 262 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~-~Drv~vL~~G~iv~~ 262 (515)
+|||||+.+|+||||||||+|||+.++..+.+.|++++++| +|||+++|++ .++..+ |||+++|++|++++.
T Consensus 174 ~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g------~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGK------RSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSS------CEEEEECSSG-GGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC------CEEEEEeeCH-HHHHhhcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999986555 8999999985 356665 899999999999999
Q ss_pred cCccchHH
Q psy10236 263 GKRRDMLP 270 (515)
Q Consensus 263 G~~~~~~~ 270 (515)
|+++++..
T Consensus 247 g~~~~~~~ 254 (267)
T 2zu0_C 247 GDFTLVKQ 254 (267)
T ss_dssp ECTTHHHH
T ss_pred cCHHHHhh
Confidence 99987653
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=5.6e-48 Score=381.04 Aligned_cols=217 Identities=17% Similarity=0.164 Sum_probs=183.1
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCC--CCCCeeEEEECCeeCCh---hh-hcc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR--NDAKAFQVILNGHSIPL---NA-LKR 112 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~--~~~~~G~I~~~G~~~~~---~~-~~~ 112 (515)
+|+++|++++| +++.+|+|+||++++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++.. .. .++
T Consensus 3 ~l~~~~l~~~y--~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASI--DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEE--CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 69999999988 457899999999999999999999999999999999998 78999999999998742 12 245
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhc-CCCCCCCchhhHHHHHHHHHHHcCC-cccccCcccC-CChHHHHHHHHHHHH
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHL-RRPPKHSIKVTTSEQMGLLIEELGL-TQVLSTRVGR-LTTSELKRLSIACCL 189 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~v~~-LSGGerqRv~IA~aL 189 (515)
.++|++|++.+++.+||.||+.+.... .... ....+..++++++++.+|| .+..++++++ |||||||||+|||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL 158 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGRE--VGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLL 158 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhcccc--CCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHH
Confidence 689999999999999999999886431 1110 0122345678899999999 5889999999 999999999999999
Q ss_pred HhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhh-ccEEEEEeCCeEEEecCcc
Q psy10236 190 MSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTM-ISRVLLVSGGRTMYSGKRR 266 (515)
Q Consensus 190 ~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~-~Drv~vL~~G~iv~~G~~~ 266 (515)
+.+|++|||||||+|||+.++..+.+.|++++++| +|||+++|++. ++..+ ||++++|++|++++.|+++
T Consensus 159 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g------~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 159 VLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPN------FGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTT------CEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcC------CEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999996555 89999999864 56677 5999999999999999876
No 26
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.8e-47 Score=376.86 Aligned_cols=208 Identities=20% Similarity=0.305 Sum_probs=186.3
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
++++++|++++ .+|+|+||++++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++. ...+++.+
T Consensus 3 ~~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 3 IVMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred cEEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 37999999974 5899999999999999999999999999999999999999 99999999873 23456789
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
+|++|++.+++.+||+||+.+... . .. . +++++++++.+||.+..++++++|||||||||+|||||+.+|+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~-~--~~-----~-~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 146 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQH-D--KT-----R-TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITP 146 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCS-S--TT-----C-HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred EEECCCCccCCCCcHHHHHHHhhc-c--CC-----c-HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999987521 1 10 1 4668889999999999999999999999999999999999999
Q ss_pred -------EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccc
Q psy10236 195 -------ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRD 267 (515)
Q Consensus 195 -------lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~ 267 (515)
+|||||||+|||+.++..+.+.|++++++| +|||+++|+. ..+..+||++++|++|++++.|++++
T Consensus 147 ~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g------~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 219 (249)
T 2qi9_C 147 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQG------LAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREE 219 (249)
T ss_dssp TTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTT------CEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred cCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCC------CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999997666 8999999984 46778999999999999999998876
Q ss_pred h
Q psy10236 268 M 268 (515)
Q Consensus 268 ~ 268 (515)
+
T Consensus 220 ~ 220 (249)
T 2qi9_C 220 V 220 (249)
T ss_dssp H
T ss_pred H
Confidence 5
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=8.6e-48 Score=383.92 Aligned_cols=224 Identities=14% Similarity=0.191 Sum_probs=185.2
Q ss_pred CeEEEEeeEEeCCC-CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccc
Q psy10236 38 PHLQVRGLEVPPSS-KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~-~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~ 113 (515)
.+|+++||+++|.. +++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ..+++.
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 47999999998842 12679999999999999999999999999999999999999999999999998742 345678
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHc--CCcccccCcccCCChHHHHHHHHHHHHHh
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEEL--GLTQVLSTRVGRLTTSELKRLSIACCLMS 191 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~LSGGerqRv~IA~aL~~ 191 (515)
++||+|++.+++ .||+||+.++..................+.++++.+ |+....++++.+|||||||||+|||||+.
T Consensus 95 i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 95 VAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp EEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 999999998887 599999987532110000000001122346778888 78888899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchH
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~ 269 (515)
+|+||||||||+|||+.++..+.+.|++++++. ++|||+++|++ ..+ ..||++++|++|+++..|+++++.
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-----g~tviivtHd~-~~~-~~~d~v~~l~~G~i~~~g~~~~l~ 244 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWA-----SRTVLLITQQL-SLA-ERAHHILFLKEGSVCEQGTHLQLM 244 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTT-----TSEEEEECSCH-HHH-TTCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhc-----CCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999986531 38999999985 344 459999999999999999988765
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.8e-47 Score=375.34 Aligned_cols=211 Identities=18% Similarity=0.312 Sum_probs=179.5
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~ 115 (515)
.++++||+++|..+++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ..+++.++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 589999999983235679999999999999999999999999999999999999999999999998742 34567899
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccccc-----------CcccCCChHHHHHHH
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLS-----------TRVGRLTTSELKRLS 184 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-----------~~v~~LSGGerqRv~ 184 (515)
||+|++.+++ .||+||+.+... . . ..+++.++++.+++.+..+ +++.+|||||||||+
T Consensus 87 ~v~Q~~~l~~-~tv~enl~~~~~----~--~----~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~ 155 (247)
T 2ff7_A 87 VVLQDNVLLN-RSIIDNISLANP----G--M----SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIA 155 (247)
T ss_dssp EECSSCCCTT-SBHHHHHTTTCT----T--C----CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHH
T ss_pred EEeCCCcccc-ccHHHHHhccCC----C--C----CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHH
Confidence 9999998886 599999987421 1 0 1234566777777765444 456789999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||||+.+|++|||||||+|||+.++..+.+.|++++ +| +|||+++|++. .+ ..||++++|++|++++.|+
T Consensus 156 iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g------~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~ 226 (247)
T 2ff7_A 156 IARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KG------RTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGK 226 (247)
T ss_dssp HHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TT------SEEEEECSSGG-GG-TTSSEEEEEETTEEEEEEC
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CC------CEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999995 45 89999999864 44 4699999999999999999
Q ss_pred ccchH
Q psy10236 265 RRDML 269 (515)
Q Consensus 265 ~~~~~ 269 (515)
++++.
T Consensus 227 ~~~l~ 231 (247)
T 2ff7_A 227 HKELL 231 (247)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.5e-46 Score=380.24 Aligned_cols=212 Identities=17% Similarity=0.242 Sum_probs=179.0
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i 114 (515)
..|+++||+++|. +++.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ..+++.+
T Consensus 52 ~~i~~~~vs~~y~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 52 GRIEFENVHFSYA-DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp CCEEEEEEEEESS-TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CeEEEEEEEEEcC-CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 4699999999985 45679999999999999999999999999999999999999999999999999843 4567889
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcC-----------CcccccCcccCCChHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELG-----------LTQVLSTRVGRLTTSELKRL 183 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-----------L~~~~~~~v~~LSGGerqRv 183 (515)
+||+|++.+++ .||+||+.++.... . .+++.++++..+ +....+++..+|||||||||
T Consensus 131 ~~v~Q~~~lf~-~Tv~eNi~~~~~~~------~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRv 199 (306)
T 3nh6_A 131 GVVPQDTVLFN-DTIADNIRYGRVTA------G----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV 199 (306)
T ss_dssp EEECSSCCCCS-EEHHHHHHTTSTTC------C----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred EEEecCCccCc-ccHHHHHHhhcccC------C----HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHH
Confidence 99999998885 59999998753211 0 122333444444 44445566678999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ + +|+|+++|+. ..+.. ||+|++|++|++++.|
T Consensus 200 aiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~------~Tvi~itH~l-~~~~~-aD~i~vl~~G~iv~~G 270 (306)
T 3nh6_A 200 AIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-N------RTTIVVAHRL-STVVN-ADQILVIKDGCIVERG 270 (306)
T ss_dssp HHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-T------SEEEEECCSH-HHHHT-CSEEEEEETTEEEEEE
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-C------CEEEEEEcCh-HHHHc-CCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999864 3 7889999975 34554 9999999999999999
Q ss_pred CccchHH
Q psy10236 264 KRRDMLP 270 (515)
Q Consensus 264 ~~~~~~~ 270 (515)
+++++..
T Consensus 271 ~~~el~~ 277 (306)
T 3nh6_A 271 RHEALLS 277 (306)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9988764
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=6.1e-47 Score=364.79 Aligned_cols=202 Identities=15% Similarity=0.274 Sum_probs=177.7
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYV 117 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv 117 (515)
.+|+++|++++| ++ .+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..++.++|+
T Consensus 9 ~~l~~~~ls~~y--~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~--~~~~~i~~v 83 (214)
T 1sgw_A 9 SKLEIRDLSVGY--DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT--KVKGKIFFL 83 (214)
T ss_dssp CEEEEEEEEEES--SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG--GGGGGEEEE
T ss_pred ceEEEEEEEEEe--CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh--hhcCcEEEE
Confidence 379999999988 45 7999999999999999999999999999999999999999999999999875 357789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|++.+++.+||.||+.+....+.. . .. +++++++++.+||.+. ++++.+|||||||||+|||||+.+|++||
T Consensus 84 ~q~~~~~~~~tv~enl~~~~~~~~~-~----~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lll 156 (214)
T 1sgw_A 84 PEEIIVPRKISVEDYLKAVASLYGV-K----VN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYV 156 (214)
T ss_dssp CSSCCCCTTSBHHHHHHHHHHHTTC-C----CC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred eCCCcCCCCCCHHHHHHHHHHhcCC-c----hH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999999987654321 1 12 4668889999999988 99999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
|||||+|||+.++..+.+.|++++++| +|||+++|++. ++..+||+++++ +|+|
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~~~~~g------~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 157 LDDPVVAIDEDSKHKVLKSILEILKEK------GIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHHHHHH------SEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHhCC------CEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 999999999999999999999997655 79999999864 678888887755 4443
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=4.8e-47 Score=372.80 Aligned_cols=211 Identities=17% Similarity=0.260 Sum_probs=180.8
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLV 115 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~ 115 (515)
+++++|++++|. +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..+++.++
T Consensus 1 ml~~~~l~~~y~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 1 MLSARHVDFAYD-DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp CEEEEEEEECSS-SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred CEEEEEEEEEeC-CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 489999999873 45679999999999999999999999999999999999999999999999998743 23567899
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccC-----------cccCCChHHHHHHH
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLST-----------RVGRLTTSELKRLS 184 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-----------~v~~LSGGerqRv~ 184 (515)
|++|++.+++ .||+||+.++.. .. ..+++++++++.+++.+..++ ++++|||||||||+
T Consensus 80 ~v~q~~~l~~-~tv~enl~~~~~---~~------~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~ 149 (243)
T 1mv5_A 80 FVSQDSAIMA-GTIRENLTYGLE---GD------YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLA 149 (243)
T ss_dssp EECCSSCCCC-EEHHHHTTSCTT---SC------SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHH
T ss_pred EEcCCCcccc-ccHHHHHhhhcc---CC------CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHH
Confidence 9999998887 599999986421 11 012456778888888766554 45789999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|||||+.+|++|||||||+|||+.++..+.+.|++++ +| +|||+++|++ ..+ ..||++++|++|+++..|+
T Consensus 150 lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~------~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~ 220 (243)
T 1mv5_A 150 IARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KG------RTTLVIAHRL-STI-VDADKIYFIEKGQITGSGK 220 (243)
T ss_dssp HHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TT------SEEEEECCSH-HHH-HHCSEEEEEETTEECCCSC
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CC------CEEEEEeCCh-HHH-HhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999997 45 8999999985 344 5699999999999999998
Q ss_pred ccchH
Q psy10236 265 RRDML 269 (515)
Q Consensus 265 ~~~~~ 269 (515)
++++.
T Consensus 221 ~~~~~ 225 (243)
T 1mv5_A 221 HNELV 225 (243)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.8e-46 Score=368.87 Aligned_cols=208 Identities=15% Similarity=0.224 Sum_probs=183.4
Q ss_pred eEEEEeeEEeCCCCC----cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccce
Q psy10236 39 HLQVRGLEVPPSSKN----KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRL 114 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~----~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i 114 (515)
+|+++|++++| ++ +.+|+|+||+++ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++.....++.+
T Consensus 1 ml~~~~l~~~y--~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i 76 (263)
T 2pjz_A 1 MIQLKNVGITL--SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRY 76 (263)
T ss_dssp CEEEEEEEEEE--EEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTE
T ss_pred CEEEEEEEEEe--CCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhhe
Confidence 48999999987 33 679999999999 9999999999999999999999999 9999999999987431125679
Q ss_pred E-EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHHHHHhC
Q psy10236 115 V-YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLMSH 192 (515)
Q Consensus 115 ~-yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~aL~~~ 192 (515)
+ |++|++.+ .+||.||+.+....+. ..+++++++++.+||. +..++++++|||||||||+|||||+.+
T Consensus 77 ~~~v~Q~~~l--~~tv~enl~~~~~~~~--------~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 146 (263)
T 2pjz_A 77 STNLPEAYEI--GVTVNDIVYLYEELKG--------LDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQ 146 (263)
T ss_dssp EECCGGGSCT--TSBHHHHHHHHHHHTC--------CCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCcc--CCcHHHHHHHhhhhcc--------hHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 9 99999877 8999999998764331 1135678899999999 999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhcc-EEEEEeCCeEEEecCccchHH
Q psy10236 193 ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMIS-RVLLVSGGRTMYSGKRRDMLP 270 (515)
Q Consensus 193 p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~D-rv~vL~~G~iv~~G~~~~~~~ 270 (515)
|++|||||||+|||+.++..+.+.|++++ .|||+++|++ .++.++|| ++++|++|++++.|+++++.+
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~L~~~~---------~tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 147 PEIVGLDEPFENVDAARRHVISRYIKEYG---------KEGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHSC---------SEEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHhc---------CcEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999863 2889999985 46788999 999999999999999888753
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.3e-45 Score=366.02 Aligned_cols=211 Identities=15% Similarity=0.265 Sum_probs=177.5
Q ss_pred CeEEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccc
Q psy10236 38 PHLQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~ 113 (515)
++|+++||+++|... .+.+|+|+||++++||+++|+||||||||||+|+|+|+++| +|+|.++|+++.. ..+++.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999988422 24699999999999999999999999999999999999987 8999999998732 345778
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccc-----------ccCcccCCChHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV-----------LSTRVGRLTTSELKR 182 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~v~~LSGGerqR 182 (515)
++||+|++.+++ .||+||+.++.. . .. ++++.++++.+++.+. .++++.+||||||||
T Consensus 95 i~~v~Q~~~l~~-~tv~enl~~~~~----~--~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqR 163 (260)
T 2ghi_A 95 IGIVPQDTILFN-ETIKYNILYGKL----D--AT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQR 163 (260)
T ss_dssp EEEECSSCCCCS-EEHHHHHHTTCT----T--CC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHH
T ss_pred EEEEcCCCcccc-cCHHHHHhccCC----C--CC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHH
Confidence 999999998886 599999987421 1 01 2345566777776443 245678999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
|+|||||+.+|+||||||||+|||+.++..+.+.|+++++ + +|||+++|++. .+ ..||++++|++|+++..
T Consensus 164 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~------~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~ 234 (260)
T 2ghi_A 164 IAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-N------RTLIIIAHRLS-TI-SSAESIILLNKGKIVEK 234 (260)
T ss_dssp HHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-T------SEEEEECSSGG-GS-TTCSEEEEEETTEEEEE
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-C------CEEEEEcCCHH-HH-HhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999854 4 79999999864 44 46999999999999999
Q ss_pred cCccchH
Q psy10236 263 GKRRDML 269 (515)
Q Consensus 263 G~~~~~~ 269 (515)
|+++++.
T Consensus 235 g~~~~l~ 241 (260)
T 2ghi_A 235 GTHKDLL 241 (260)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9988765
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.9e-46 Score=387.28 Aligned_cols=211 Identities=15% Similarity=0.236 Sum_probs=185.7
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i 114 (515)
..|+++||+++|..+++.+|+||||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++.. ..+++.+
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 3699999999985456789999999999999999999999999999999999998 99999999998743 3457889
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccC-----------CChHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGR-----------LTTSELKRL 183 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~-----------LSGGerqRv 183 (515)
+||+|+..+++ +||+||+.+.. . ..++++.++++.++|.+..++++.+ |||||||||
T Consensus 97 g~v~Q~~~lf~-~tv~enl~~~~----~-------~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRv 164 (390)
T 3gd7_A 97 GVIPQKVFIFS-GTFRKNLDPNA----A-------HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLM 164 (390)
T ss_dssp EEESCCCCCCS-EEHHHHHCTTC----C-------SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHH
T ss_pred EEEcCCcccCc-cCHHHHhhhcc----c-------cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHH
Confidence 99999999987 69999996321 0 1235678899999999999999988 999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||+.+|++|||||||+|||+..+.++.+.|+++.+ + +|+|+++|+. +....||||++|++|+++..|
T Consensus 165 alARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~-~------~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g 235 (390)
T 3gd7_A 165 CLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFA-D------CTVILCEARI--EAMLECDQFLVIEENKVRQYD 235 (390)
T ss_dssp HHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTT-T------SCEEEECSSS--GGGTTCSEEEEEETTEEEEES
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC-C------CEEEEEEcCH--HHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999987642 3 7899999985 456679999999999999999
Q ss_pred CccchHH
Q psy10236 264 KRRDMLP 270 (515)
Q Consensus 264 ~~~~~~~ 270 (515)
+++++..
T Consensus 236 ~~~el~~ 242 (390)
T 3gd7_A 236 SILELYH 242 (390)
T ss_dssp SHHHHHH
T ss_pred CHHHHHh
Confidence 9998764
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5.8e-45 Score=354.89 Aligned_cols=201 Identities=15% Similarity=0.268 Sum_probs=166.8
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYV 117 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv 117 (515)
.+|+++|++++|..+++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++| .++|+
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g----------~i~~v 74 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------RISFC 74 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS----------CEEEE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC----------EEEEE
Confidence 47999999998853456799999999999999999999999999999999999999999999998 39999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccc-----------ccCcccCCChHHHHHHHHH
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV-----------LSTRVGRLTTSELKRLSIA 186 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~v~~LSGGerqRv~IA 186 (515)
+|++.+++. ||+||+.++... .. .+..++++.+++.+. .++++.+|||||||||+||
T Consensus 75 ~q~~~~~~~-tv~enl~~~~~~-------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lA 142 (229)
T 2pze_A 75 SQFSWIMPG-TIKENIIFGVSY-------DE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 142 (229)
T ss_dssp CSSCCCCSB-CHHHHHHTTSCC-------CH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHH
T ss_pred ecCCcccCC-CHHHHhhccCCc-------Ch----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 999988885 999999874211 01 122334444454332 2334678999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCChhhHHHHHHH-HHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCc
Q psy10236 187 CCLMSHADILLLDCPTVFMDIFDTFFLVEF-LRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKR 265 (515)
Q Consensus 187 ~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~-L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~ 265 (515)
|||+.+|++|||||||+|||+.++..+.+. ++++. ++ +|||+++|++ ..+ ..||++++|++|++++.|++
T Consensus 143 ral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~------~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~ 213 (229)
T 2pze_A 143 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-AN------KTRILVTSKM-EHL-KKADKILILHEGSSYFYGTF 213 (229)
T ss_dssp HHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TT------SEEEEECCCH-HHH-HHCSEEEEEETTEEEEEECH
T ss_pred HHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CC------CEEEEEcCCh-HHH-HhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999997 45553 23 7999999985 344 46999999999999999998
Q ss_pred cchH
Q psy10236 266 RDML 269 (515)
Q Consensus 266 ~~~~ 269 (515)
+++.
T Consensus 214 ~~~~ 217 (229)
T 2pze_A 214 SELQ 217 (229)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=354.80 Aligned_cols=203 Identities=20% Similarity=0.311 Sum_probs=167.2
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEe
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVR 118 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~ 118 (515)
+++++|++++|..+++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++| .++|++
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g----------~i~~v~ 72 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----------SVAYVP 72 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----------CEEEEC
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----------EEEEEc
Confidence 5999999999843256799999999999999999999999999999999999999999999998 399999
Q ss_pred cCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHH---HHHHHcCCc-----ccccCcccCCChHHHHHHHHHHHHH
Q psy10236 119 SQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMG---LLIEELGLT-----QVLSTRVGRLTTSELKRLSIACCLM 190 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~---~~l~~lgL~-----~~~~~~v~~LSGGerqRv~IA~aL~ 190 (515)
|++.+ +.+||+||+.+..... .. ..+++. ++.+.+++. ...++++.+|||||||||+|||||+
T Consensus 73 Q~~~~-~~~tv~enl~~~~~~~-------~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 143 (237)
T 2cbz_A 73 QQAWI-QNDSLRENILFGCQLE-------EP-YYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY 143 (237)
T ss_dssp SSCCC-CSEEHHHHHHTTSCCC-------TT-HHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred CCCcC-CCcCHHHHhhCccccC-------HH-HHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 99764 6889999998753211 11 111111 123334432 2357888999999999999999999
Q ss_pred hCCCEEEEeCCCCCCChhhHHHHHHHHH---HHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccc
Q psy10236 191 SHADILLLDCPTVFMDIFDTFFLVEFLR---GWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRD 267 (515)
Q Consensus 191 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~---~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~ 267 (515)
.+|++|||||||+|||+.++..+++.|+ +++ +| +|||+++|+.. .+ ..||++++|++|+++..|++++
T Consensus 144 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~------~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~ 214 (237)
T 2cbz_A 144 SNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KN------KTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQE 214 (237)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TT------SEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHH
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CC------CEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999995 332 23 89999999864 34 5799999999999999999887
Q ss_pred hH
Q psy10236 268 ML 269 (515)
Q Consensus 268 ~~ 269 (515)
+.
T Consensus 215 ~~ 216 (237)
T 2cbz_A 215 LL 216 (237)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 37
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.8e-43 Score=386.66 Aligned_cols=213 Identities=16% Similarity=0.296 Sum_probs=179.2
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
..++++|++++|+.+++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++. ...+++.+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 469999999998644567999999999999999999999999999999999999999999999999874 34567889
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-----------cccCcccCCChHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-----------VLSTRVGRLTTSELKRL 183 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~v~~LSGGerqRv 183 (515)
+||+|++.+++. ||+||+.++.. . . .++++.+.++..++.+ ..+.+..+||||||||+
T Consensus 418 ~~v~Q~~~l~~~-tv~eni~~~~~----~--~----~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv 486 (578)
T 4a82_A 418 GLVQQDNILFSD-TVKENILLGRP----T--A----TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRL 486 (578)
T ss_dssp EEECSSCCCCSS-BHHHHHGGGCS----S--C----CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHH
T ss_pred EEEeCCCccCcc-cHHHHHhcCCC----C--C----CHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHH
Confidence 999999998876 99999987521 1 0 1133444555555433 23334457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||+++|++|+|||||+|||+.++..+.+.|+++.+ + +|+|+++|++. .+ +.||||++|++|++++.|
T Consensus 487 ~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~------~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 487 SIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-D------RTTLIVAHRLS-TI-THADKIVVIENGHIVETG 557 (578)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-T------SEEEEECSSGG-GT-TTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-C------CEEEEEecCHH-HH-HcCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999998853 3 78999999864 34 569999999999999999
Q ss_pred CccchHH
Q psy10236 264 KRRDMLP 270 (515)
Q Consensus 264 ~~~~~~~ 270 (515)
+++++.+
T Consensus 558 ~~~el~~ 564 (578)
T 4a82_A 558 THRELIA 564 (578)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9998763
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.3e-43 Score=386.53 Aligned_cols=214 Identities=20% Similarity=0.295 Sum_probs=181.8
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccc
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRR 113 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~ 113 (515)
..+++++|++++|+.+++.+|+|+|+++++||++||+||||||||||+|+|+|+++|++|+|.+||+++. ...+++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 3479999999998533367999999999999999999999999999999999999999999999999874 3456788
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccC-----------cccCCChHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLST-----------RVGRLTTSELKR 182 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-----------~v~~LSGGerqR 182 (515)
++||+|++.+++. ||+||+.++.. +. ..+++++++++.+|+.+..++ +..+||||||||
T Consensus 419 i~~v~Q~~~l~~~-tv~eni~~~~~---~~------~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr 488 (582)
T 3b5x_A 419 FALVSQNVHLFND-TIANNIAYAAE---GE------YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQR 488 (582)
T ss_pred eEEEcCCCccccc-cHHHHHhccCC---CC------CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHH
Confidence 9999999998875 99999987531 11 112456667777776554433 446799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
++|||||+++|++|+|||||+|||+.++..+.+.|+++.+ | +|+|+++|++. .+ +.||||++|++|++++.
T Consensus 489 ~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~------~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~ 559 (582)
T 3b5x_A 489 VAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-N------KTVLVIAHRLS-TI-EQADEILVVDEGEIIER 559 (582)
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-C------CEEEEEecCHH-HH-HhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999864 4 89999999863 34 57999999999999999
Q ss_pred cCccchH
Q psy10236 263 GKRRDML 269 (515)
Q Consensus 263 G~~~~~~ 269 (515)
|+++++.
T Consensus 560 g~~~~l~ 566 (582)
T 3b5x_A 560 GRHADLL 566 (582)
T ss_pred CCHHHHH
Confidence 9998875
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.4e-43 Score=387.59 Aligned_cols=214 Identities=15% Similarity=0.235 Sum_probs=181.6
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i 114 (515)
.+++++|++++|+.+++.+|+|+|+++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ..+++.+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 4699999999984223679999999999999999999999999999999999999999999999999843 4567789
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccc-----------cCcccCCChHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVL-----------STRVGRLTTSELKRL 183 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~v~~LSGGerqRv 183 (515)
+||+|++.+++. ||+||+.++.. +. . .+++++++++.+++.+.. +++..+||||||||+
T Consensus 420 ~~v~Q~~~l~~~-tv~eni~~~~~---~~--~----~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl 489 (582)
T 3b60_A 420 ALVSQNVHLFND-TVANNIAYART---EE--Y----SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 489 (582)
T ss_dssp EEECSSCCCCSS-BHHHHHHTTTT---SC--C----CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHH
T ss_pred eEEccCCcCCCC-CHHHHHhccCC---CC--C----CHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 999999998875 99999987531 11 0 124456667766665433 334568999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||+++|++|+|||||+|||+.++..+.+.|+++.+ | +|+|+++|++. .+ +.||||++|++|++++.|
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~------~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g 560 (582)
T 3b60_A 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQK-N------RTSLVIAHRLS-TI-EQADEIVVVEDGIIVERG 560 (582)
T ss_dssp HHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-T------SEEEEECSCGG-GT-TTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-C------CEEEEEeccHH-HH-HhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999864 5 89999999864 34 579999999999999999
Q ss_pred CccchHH
Q psy10236 264 KRRDMLP 270 (515)
Q Consensus 264 ~~~~~~~ 270 (515)
+++++.+
T Consensus 561 ~~~~l~~ 567 (582)
T 3b60_A 561 THSELLA 567 (582)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9988764
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=6.2e-43 Score=385.27 Aligned_cols=215 Identities=20% Similarity=0.289 Sum_probs=181.2
Q ss_pred Ce-EEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhcc
Q psy10236 38 PH-LQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKR 112 (515)
Q Consensus 38 ~~-L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~ 112 (515)
.. ++++|++++|+.+ ++.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ..+++
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 418 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418 (595)
T ss_dssp CCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHh
Confidence 35 9999999998532 3579999999999999999999999999999999999999999999999999843 45677
Q ss_pred ceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccc-------ccCcc----cCCChHHHH
Q psy10236 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV-------LSTRV----GRLTTSELK 181 (515)
Q Consensus 113 ~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v----~~LSGGerq 181 (515)
.++||+|++.+++ .||+||+.++..... ...+++++++++.+|+.+. .++.+ .+|||||||
T Consensus 419 ~i~~v~Q~~~l~~-~tv~eni~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~q 490 (595)
T 2yl4_A 419 KIGTVSQEPILFS-CSIAENIAYGADDPS-------SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQ 490 (595)
T ss_dssp SEEEECSSCCCCS-SBHHHHHHTTSSSTT-------TSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHH
T ss_pred ceEEEccCCcccC-CCHHHHHhhcCCCcc-------ccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHH
Confidence 8999999999887 499999987532110 1123557778888877543 34444 679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEE
Q psy10236 182 RLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMY 261 (515)
Q Consensus 182 Rv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~ 261 (515)
|++|||||+++|++|+|||||+|||+.++..+.+.|+++.+ + +|+|+++|++. .+ +.||||++|++|++++
T Consensus 491 rv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~------~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~ 561 (595)
T 2yl4_A 491 RIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-G------RTVLVIAHRLS-TI-KNANMVAVLDQGKITE 561 (595)
T ss_dssp HHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-T------SEEEEECCCHH-HH-HHSSEEEEEETTEEEE
T ss_pred HHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-C------CEEEEEecCHH-HH-HcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999875 4 79999999853 44 5699999999999999
Q ss_pred ecCccchH
Q psy10236 262 SGKRRDML 269 (515)
Q Consensus 262 ~G~~~~~~ 269 (515)
.|+++++.
T Consensus 562 ~g~~~~l~ 569 (595)
T 2yl4_A 562 YGKHEELL 569 (595)
T ss_dssp EECSCC--
T ss_pred ECCHHHHH
Confidence 99999875
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-43 Score=387.12 Aligned_cols=218 Identities=17% Similarity=0.238 Sum_probs=181.2
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccc
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRR 113 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~ 113 (515)
...++++|++++|+.+++.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||+++. ...++++
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 3469999999998655678999999999999999999999999999999999999999999999999874 3456788
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHH-----HHHHHHHc--CCcccccCcccCCChHHHHHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQ-----MGLLIEEL--GLTQVLSTRVGRLTTSELKRLSIA 186 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~v~~LSGGerqRv~IA 186 (515)
++||+|++.+++. ||+||+.++... ....+..+. +.+.++.+ |++...+++..+||||||||++||
T Consensus 419 i~~v~Q~~~lf~~-tv~eni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lA 491 (587)
T 3qf4_A 419 ISAVPQETVLFSG-TIKENLKWGRED------ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIA 491 (587)
T ss_dssp EEEECSSCCCCSE-EHHHHHTTTCSS------CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHH
T ss_pred eEEECCCCcCcCc-cHHHHHhccCCC------CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHH
Confidence 9999999998865 999999864211 011111111 12223333 555556677788999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCcc
Q psy10236 187 CCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRR 266 (515)
Q Consensus 187 ~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~ 266 (515)
|||+++|++|+|||||++||+.++..+.+.|+++.+ | +|+|+++|++. ....||||++|++|++++.|+++
T Consensus 492 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~------~tvi~itH~l~--~~~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 492 RALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK-G------CTTFIITQKIP--TALLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHST-T------CEEEEEESCHH--HHTTSSEEEEEETTEEEEEECHH
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCC-C------CEEEEEecChH--HHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999843 4 89999999853 44689999999999999999999
Q ss_pred chHH
Q psy10236 267 DMLP 270 (515)
Q Consensus 267 ~~~~ 270 (515)
++.+
T Consensus 563 el~~ 566 (587)
T 3qf4_A 563 ELLE 566 (587)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8864
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-42 Score=381.51 Aligned_cols=212 Identities=16% Similarity=0.230 Sum_probs=177.8
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccce
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRL 114 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~i 114 (515)
..++++|++++|+ +++++|+|+|+++++||++||+||||||||||+++|+|+++|++|+|.+||+++. ...+++++
T Consensus 353 ~~i~~~~v~~~y~-~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 353 GEIEFKNVWFSYD-KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp CCEEEEEEECCSS-SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred CeEEEEEEEEECC-CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 4699999999884 3567999999999999999999999999999999999999999999999999874 34577889
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccC-----------cccCCChHHHHHH
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLST-----------RVGRLTTSELKRL 183 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-----------~v~~LSGGerqRv 183 (515)
+||+|++.+++ .||+||+.++.. .. .+ +++.++++..++.+..++ +..+||||||||+
T Consensus 432 ~~v~Q~~~lf~-~tv~eni~~~~~----~~--~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv 500 (598)
T 3qf4_B 432 GIVLQDTILFS-TTVKENLKYGNP----GA--TD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLL 500 (598)
T ss_dssp EEECTTCCCCS-SBHHHHHHSSST----TC--CT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHH
T ss_pred EEEeCCCcccc-ccHHHHHhcCCC----CC--CH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHH
Confidence 99999998886 599999987421 10 11 223444555555433333 3357999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+|||||+++|++|||||||++||+.+...+.+.|+++.+ | +|+|+++|++. .+ +.||+|++|++|++++.|
T Consensus 501 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~------~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g 571 (598)
T 3qf4_B 501 AITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-G------KTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMG 571 (598)
T ss_dssp HHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT-T------SEEEEESCCTT-HH-HHCSEEEEECSSSEEECS
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC-C------CEEEEEecCHH-HH-HcCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999863 4 89999999875 44 459999999999999999
Q ss_pred CccchHH
Q psy10236 264 KRRDMLP 270 (515)
Q Consensus 264 ~~~~~~~ 270 (515)
+++++.+
T Consensus 572 ~~~~l~~ 578 (598)
T 3qf4_B 572 KHDELIQ 578 (598)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9998763
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=5.6e-42 Score=344.73 Aligned_cols=197 Identities=16% Similarity=0.267 Sum_probs=151.9
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEE
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~y 116 (515)
.++++++|+++. .+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| .++|
T Consensus 38 ~~~l~~~~l~~~----~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g----------~i~~ 103 (290)
T 2bbs_A 38 DDSLSFSNFSLL----GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------RISF 103 (290)
T ss_dssp ----------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS----------CEEE
T ss_pred CceEEEEEEEEc----CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC----------EEEE
Confidence 347999999974 25699999999999999999999999999999999999999999999998 4999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccc-----------ccCcccCCChHHHHHHHH
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV-----------LSTRVGRLTTSELKRLSI 185 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~v~~LSGGerqRv~I 185 (515)
++|++.+++. ||+||+. .. .. .. .++.++++.+++.+. .++++++|||||||||+|
T Consensus 104 v~Q~~~l~~~-tv~enl~-~~--~~-----~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~l 170 (290)
T 2bbs_A 104 CSQNSWIMPG-TIKENII-GV--SY-----DE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 170 (290)
T ss_dssp ECSSCCCCSS-BHHHHHH-TT--CC-----CH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHH
T ss_pred EeCCCccCcc-cHHHHhh-Cc--cc-----ch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHH
Confidence 9999988875 9999997 32 11 01 123334555555432 233457899999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCChhhHHHHHHHH-HHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 186 ACCLMSHADILLLDCPTVFMDIFDTFFLVEFL-RGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 186 A~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L-~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
||||+.+|++|||||||+|||+.++..+.+.+ ++++ +| +|||+++|+. ..+ ..||++++|++|++++.|+
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~------~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~ 241 (290)
T 2bbs_A 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-AN------KTRILVTSKM-EHL-KKADKILILHEGSSYFYGT 241 (290)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TT------SEEEEECCCH-HHH-HHSSEEEEEETTEEEEEEC
T ss_pred HHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CC------CEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999974 4443 24 7999999985 344 5699999999999999999
Q ss_pred ccchH
Q psy10236 265 RRDML 269 (515)
Q Consensus 265 ~~~~~ 269 (515)
++++.
T Consensus 242 ~~~l~ 246 (290)
T 2bbs_A 242 FSELQ 246 (290)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88774
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.3e-40 Score=391.40 Aligned_cols=215 Identities=19% Similarity=0.276 Sum_probs=184.1
Q ss_pred CeEEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccc
Q psy10236 38 PHLQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~ 113 (515)
..++++||+++|+.+ +.++|+||||+|+|||.+||+||||||||||+++|.|+++|++|+|.+||.++. ...+|++
T Consensus 1075 g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp CCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred CeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 369999999998533 457999999999999999999999999999999999999999999999999984 3578999
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-------ccccCcccC----CChHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-------QVLSTRVGR----LTTSELKR 182 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~----LSGGerqR 182 (515)
++||+|++.+|.. |++|||.++.. +. ...++++.++++..++. +..|+.+++ ||||||||
T Consensus 1155 i~~V~Qdp~LF~g-TIreNI~~gld---~~-----~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQr 1225 (1321)
T 4f4c_A 1155 IAIVSQEPTLFDC-SIAENIIYGLD---PS-----SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQR 1225 (1321)
T ss_dssp EEEECSSCCCCSE-EHHHHHSSSSC---TT-----TSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHH
T ss_pred eEEECCCCEeeCc-cHHHHHhccCC---CC-----CCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHH
Confidence 9999999999876 99999976521 11 11234566667766653 446777764 99999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
++|||||+++|+|||||||||+||+.+...|.+.|+++.+ ++|+|+++|... ...-||||+||++|+|++.
T Consensus 1226 iaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~-------~~TvI~IAHRLs--Ti~~aD~I~Vld~G~IvE~ 1296 (1321)
T 4f4c_A 1226 IAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE-------GRTCIVIAHRLN--TVMNADCIAVVSNGTIIEK 1296 (1321)
T ss_dssp HHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS-------SSEEEEECSSSS--TTTTCSEEEEESSSSEEEE
T ss_pred HHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC-------CCEEEEeccCHH--HHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999987643 489999999764 4567999999999999999
Q ss_pred cCccchHH
Q psy10236 263 GKRRDMLP 270 (515)
Q Consensus 263 G~~~~~~~ 270 (515)
|+++++++
T Consensus 1297 Gth~eLl~ 1304 (1321)
T 4f4c_A 1297 GTHTQLMS 1304 (1321)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 99999884
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.6e-39 Score=380.89 Aligned_cols=213 Identities=18% Similarity=0.264 Sum_probs=183.3
Q ss_pred CeEEEEeeEEeCCC-CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccc
Q psy10236 38 PHLQVRGLEVPPSS-KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~-~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~ 113 (515)
..++++|++++|+. .++++|+|+||++++||.+||+||||||||||+++|.|.++|++|+|.+||.++. ...+|+.
T Consensus 414 g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~ 493 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN 493 (1321)
T ss_dssp CCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc
Confidence 36999999999853 3568999999999999999999999999999999999999999999999999984 3568889
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCC-------cccccCcccC----CChHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGL-------TQVLSTRVGR----LTTSELKR 182 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~~----LSGGerqR 182 (515)
++||+|++.++.. |++|||.|+.. . ..++++.++++..++ ++..++.+|+ ||||||||
T Consensus 494 i~~v~Q~~~Lf~~-TI~eNI~~g~~----~------~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQR 562 (1321)
T 4f4c_A 494 VAVVSQEPALFNC-TIEENISLGKE----G------ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQR 562 (1321)
T ss_dssp EEEECSSCCCCSE-EHHHHHHTTCT----T------CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHH
T ss_pred ccccCCcceeeCC-chhHHHhhhcc----c------chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHH
Confidence 9999999998865 99999988631 1 112445556665554 3445666664 99999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
++||||++++|+|||||||||+||+.+...+.+.|+++.+ ++|+|+++|+.. ..+.||+|++|++|+|++.
T Consensus 563 iaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-------~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~ 633 (1321)
T 4f4c_A 563 IAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-------GRTTIIIAHRLS--TIRNADLIISCKNGQVVEV 633 (1321)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-------TSEEEEECSCTT--TTTTCSEEEEEETTEEEEE
T ss_pred HHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-------CCEEEEEcccHH--HHHhCCEEEEeeCCeeecc
Confidence 9999999999999999999999999999999999999865 389999999864 6788999999999999999
Q ss_pred cCccchHH
Q psy10236 263 GKRRDMLP 270 (515)
Q Consensus 263 G~~~~~~~ 270 (515)
|+.+++..
T Consensus 634 Gth~eL~~ 641 (1321)
T 4f4c_A 634 GDHRALMA 641 (1321)
T ss_dssp ECHHHHHT
T ss_pred CCHHHHHH
Confidence 99999874
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=9.8e-39 Score=350.87 Aligned_cols=206 Identities=19% Similarity=0.227 Sum_probs=180.2
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEE
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~y 116 (515)
.++++++|+++.| ++ ..|+++||++++||++||+||||||||||+|+|+|+++|++|+|.+ ...++|
T Consensus 355 ~~~l~~~~l~~~~--~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~----------~~~i~~ 421 (607)
T 3bk7_A 355 ETLVEYPRLVKDY--GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW----------DLTVAY 421 (607)
T ss_dssp CEEEEECCEEEEC--SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC----------CCCEEE
T ss_pred ceEEEEeceEEEe--cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE----------eeEEEE
Confidence 4589999999987 33 3699999999999999999999999999999999999999999976 246999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
++|+....+.+||.|++....... ....++++++++.+||.+..++++++|||||||||+|||||+.+|++|
T Consensus 422 v~Q~~~~~~~~tv~e~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lL 493 (607)
T 3bk7_A 422 KPQYIKAEYEGTVYELLSKIDSSK--------LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIY 493 (607)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHH--------HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEE
T ss_pred EecCccCCCCCcHHHHHHhhhccC--------CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 999988778899999886531100 011356788999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHh-CCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC--CeEEEecCccchHH
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWAS-GGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG--GRTMYSGKRRDMLP 270 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~-~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~--G~iv~~G~~~~~~~ 270 (515)
||||||+|||+.++..+.+.|+++++ .| +|||+++|+. .++..+|||+++|++ |+++..|+++++..
T Consensus 494 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g------~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 494 LLDEPSAYLDVEQRLAVSRAIRHLMEKNE------KTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHHTT------CEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCC------CEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999999999999975 34 7999999984 578899999999986 88899999998875
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1e-38 Score=346.85 Aligned_cols=206 Identities=19% Similarity=0.218 Sum_probs=179.6
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEE
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~y 116 (515)
.++++++|+++.| ++ ..|+++||++++||++||+||||||||||+|+|+|+.+|++|+|.+ ...++|
T Consensus 285 ~~~l~~~~l~~~~--~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~----------~~~i~~ 351 (538)
T 1yqt_A 285 ETLVTYPRLVKDY--GS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW----------DLTVAY 351 (538)
T ss_dssp CEEEEECCEEEEE--TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC----------CCCEEE
T ss_pred CeEEEEeeEEEEE--CC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE----------CceEEE
Confidence 4579999999887 33 4699999999999999999999999999999999999999999975 246999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
++|+....+.+||.|++........ ...++++++++.+|+.+..++++++|||||||||+|||+|+.+|++|
T Consensus 352 v~Q~~~~~~~~tv~~~~~~~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lL 423 (538)
T 1yqt_A 352 KPQYIKADYEGTVYELLSKIDASKL--------NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIY 423 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHH--------TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEE
T ss_pred EecCCcCCCCCcHHHHHHhhhccCC--------CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999877788999998865311000 11246778999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHh-CCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC--CeEEEecCccchHH
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWAS-GGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG--GRTMYSGKRRDMLP 270 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~-~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~--G~iv~~G~~~~~~~ 270 (515)
||||||+|||+.++..+.+.|+++++ .| .|||+++|+ ..++..+||||++|++ |+++..|+++++..
T Consensus 424 lLDEPt~~LD~~~~~~i~~~l~~l~~~~g------~tvi~vsHd-~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 424 LLDEPSAYLDVEQRLAVSRAIRHLMEKNE------KTALVVEHD-VLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHHHT------CEEEEECSC-HHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCC------CEEEEEeCC-HHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999974 45 799999997 4678899999999986 88999999998875
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2e-38 Score=375.23 Aligned_cols=217 Identities=17% Similarity=0.236 Sum_probs=176.9
Q ss_pred CeEEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccc
Q psy10236 38 PHLQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~ 113 (515)
..++++|++++|+.+ +.++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++. ...+++.
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 469999999998532 357999999999999999999999999999999999999999999999999873 3457788
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHH-----HHHHHHHc--CCcccccCcccCCChHHHHHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQ-----MGLLIEEL--GLTQVLSTRVGRLTTSELKRLSIA 186 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~v~~LSGGerqRv~IA 186 (515)
++||+|++.+++. ||+||+.++... . ...+..+. +.+.++.+ |++.....+..+||||||||++||
T Consensus 466 i~~v~Q~~~l~~~-ti~eNi~~g~~~---~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiA 538 (1284)
T 3g5u_A 466 IGVVSQEPVLFAT-TIAENIRYGRED---V---TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIA 538 (1284)
T ss_dssp EEEECSSCCCCSS-CHHHHHHHHCSS---C---CHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHH
T ss_pred eEEEcCCCccCCc-cHHHHHhcCCCC---C---CHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHH
Confidence 9999999999876 999999986421 0 11111111 12223333 222233344557999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCcc
Q psy10236 187 CCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRR 266 (515)
Q Consensus 187 ~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~ 266 (515)
|||+.+|+||||||||++||+.+...+.+.|+++.+ | +|+|+++|+. ..+ ..||+|++|++|++++.|+++
T Consensus 539 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~------~t~i~itH~l-~~i-~~~d~i~vl~~G~i~~~g~~~ 609 (1284)
T 3g5u_A 539 RALVRNPKILLLDEATSALDTESEAVVQAALDKARE-G------RTTIVIAHRL-STV-RNADVIAGFDGGVIVEQGNHD 609 (1284)
T ss_dssp HHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHT-T------SEEEEECSCH-HHH-TTCSEEEECSSSCCCCEECHH
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcC-C------CEEEEEecCH-HHH-HcCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999988754 4 8999999985 345 559999999999999999999
Q ss_pred chHH
Q psy10236 267 DMLP 270 (515)
Q Consensus 267 ~~~~ 270 (515)
++..
T Consensus 610 ~l~~ 613 (1284)
T 3g5u_A 610 ELMR 613 (1284)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.4e-38 Score=343.43 Aligned_cols=208 Identities=17% Similarity=0.196 Sum_probs=177.7
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEE
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~y 116 (515)
.+.++++|+++.+ ++ ..|+++|+++++||++||+||||||||||+|+|+|+++|++|+|.+++. .++|
T Consensus 267 ~~~l~~~~l~~~~--~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~i~~ 334 (538)
T 3ozx_A 267 KTKMKWTKIIKKL--GD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ---------ILSY 334 (538)
T ss_dssp CEEEEECCEEEEE--TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC---------CEEE
T ss_pred cceEEEcceEEEE--CC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe---------eeEe
Confidence 4579999999887 33 4688889999999999999999999999999999999999999987653 5899
Q ss_pred EecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 117 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
++|+....+.+||.||+.+....... .....++++++.+||.+..++++++|||||||||+|||||+.+|+||
T Consensus 335 ~~q~~~~~~~~tv~~~l~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lL 407 (538)
T 3ozx_A 335 KPQRIFPNYDGTVQQYLENASKDALS-------TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLY 407 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHCSSTTC-------TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred echhcccccCCCHHHHHHHhhhhccc-------hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 99987777789999999874211100 11245678999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC--CeEEEecCccchH
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG--GRTMYSGKRRDML 269 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~--G~iv~~G~~~~~~ 269 (515)
||||||+|||+.++.++.+.|++++++. +.|||+++|+ ..++..+||||++|++ |.....+++.++.
T Consensus 408 lLDEPT~gLD~~~~~~i~~~l~~l~~~~-----g~tvi~vsHd-l~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 408 VLDQPSSYLDVEERYIVAKAIKRVTRER-----KAVTFIIDHD-LSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHHT-----TCEEEEECSC-HHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhC-----CCEEEEEeCC-HHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999997642 3899999998 4678899999999986 6677777776654
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.3e-38 Score=374.74 Aligned_cols=215 Identities=23% Similarity=0.325 Sum_probs=176.8
Q ss_pred CeEEEEeeEEeCCCC-CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccc
Q psy10236 38 PHLQVRGLEVPPSSK-NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRR 113 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~-~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~ 113 (515)
..++++|++++|+.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++. ...++++
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 469999999998532 346999999999999999999999999999999999999999999999999874 3457889
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-------ccccCccc----CCChHHHHH
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-------QVLSTRVG----RLTTSELKR 182 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~----~LSGGerqR 182 (515)
++||+|++.+++ .||+||+.++..... .. .+++.+.++..++. +..|+.++ +||||||||
T Consensus 1109 i~~v~Q~~~l~~-~ti~eNi~~~~~~~~----~~----~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qr 1179 (1284)
T 3g5u_A 1109 LGIVSQEPILFD-CSIAENIAYGDNSRV----VS----YEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQR 1179 (1284)
T ss_dssp CEEEESSCCCCS-SBHHHHHTCCCSSCC----CC----HHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHH
T ss_pred eEEECCCCcccc-ccHHHHHhccCCCCC----CC----HHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHH
Confidence 999999998774 699999986432111 11 12333444444443 33444444 699999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
|+|||||+++|+||||||||+|||+.+...+.+.|+++. +| +|+|+++|+.. .+ ..||||++|++|++++.
T Consensus 1180 v~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~------~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~ 1250 (1284)
T 3g5u_A 1180 IAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EG------RTCIVIAHRLS-TI-QNADLIVVIQNGKVKEH 1250 (1284)
T ss_dssp HHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SS------SCEEEECSCTT-GG-GSCSEEEEEETBEEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CC------CEEEEEecCHH-HH-HcCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999998863 34 89999999864 45 56999999999999999
Q ss_pred cCccchHH
Q psy10236 263 GKRRDMLP 270 (515)
Q Consensus 263 G~~~~~~~ 270 (515)
|+++++.+
T Consensus 1251 g~~~~l~~ 1258 (1284)
T 3g5u_A 1251 GTHQQLLA 1258 (1284)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 99998764
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-37 Score=334.64 Aligned_cols=202 Identities=17% Similarity=0.189 Sum_probs=170.8
Q ss_pred EeeEEeCCCCCcceeeeeEEEEecC-----eEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEE
Q psy10236 43 RGLEVPPSSKNKCFVQGVSFEVKGS-----EVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYV 117 (515)
Q Consensus 43 ~~l~~~~~~~~~~iL~~vs~~v~~G-----ei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv 117 (515)
++++++|+ +.+.+++|+||++++| |++||+||||||||||+++|+|+++|++|+. + .+..++|+
T Consensus 350 ~~~~~~y~-~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~----~~~~i~~~ 418 (608)
T 3j16_B 350 ASRAFSYP-SLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------I----PKLNVSMK 418 (608)
T ss_dssp SSSCCEEC-CEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------C----CSCCEEEE
T ss_pred cceeEEec-CcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------c----cCCcEEEe
Confidence 45555553 3345799999999999 7899999999999999999999999999962 2 13469999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
+|+.......||.|++... .+... .....++++++.+||.+..++++++|||||||||+|||||+.+|+|||
T Consensus 419 ~q~~~~~~~~tv~e~~~~~--~~~~~------~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLl 490 (608)
T 3j16_B 419 PQKIAPKFPGTVRQLFFKK--IRGQF------LNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYL 490 (608)
T ss_dssp CSSCCCCCCSBHHHHHHHH--CSSTT------TSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEE
T ss_pred cccccccCCccHHHHHHHH--hhccc------ccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9987766678999987542 22111 112456789999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHh-CCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC--CeEEEecCccchHH
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWAS-GGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG--GRTMYSGKRRDMLP 270 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~-~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~--G~iv~~G~~~~~~~ 270 (515)
|||||+|||+.++..+.++|+++++ .| .|||+++|+ ..++..+||||++|++ |+++..|+|++++.
T Consensus 491 LDEPT~gLD~~~~~~i~~ll~~l~~~~g------~tviivtHd-l~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 491 IDEPSAYLDSEQRIICSKVIRRFILHNK------KTAFIVEHD-FIMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp ECCTTTTCCHHHHHHHHHHHHHHHHHHT------CEEEEECSC-HHHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHhCC------CEEEEEeCC-HHHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 9999999999999999999999864 45 899999998 4688999999999986 99999999999875
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.8e-37 Score=338.26 Aligned_cols=198 Identities=19% Similarity=0.230 Sum_probs=163.9
Q ss_pred CeEEE--------EeeEEeCCCCCc-ceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEE---------E
Q psy10236 38 PHLQV--------RGLEVPPSSKNK-CFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQV---------I 99 (515)
Q Consensus 38 ~~L~v--------~~l~~~~~~~~~-~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I---------~ 99 (515)
++|++ +|++++| +++ .+|+|+| ++++||++||+||||||||||+|+|+|+++|++|++ .
T Consensus 82 ~~i~i~~l~~~~~~~ls~~y--g~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~ 158 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRY--GVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRA 158 (607)
T ss_dssp CCCEEEEECTTGGGSEEEEC--STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHH
T ss_pred ceEEEecCCccccCCeEEEE--CCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhe
Confidence 35888 8888887 344 4899999 999999999999999999999999999999999996 4
Q ss_pred ECCeeCChh-----hhccceEEEecCCCCCC---CCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCc
Q psy10236 100 LNGHSIPLN-----ALKRRLVYVRSQSFLSP---ELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTR 171 (515)
Q Consensus 100 ~~G~~~~~~-----~~~~~i~yv~q~~~~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 171 (515)
++|.++... ..+..+++++|.....+ ..||.|++... . ..++++++++.+||.+..+++
T Consensus 159 ~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~----~---------~~~~~~~~L~~lgL~~~~~~~ 225 (607)
T 3bk7_A 159 FRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV----D---------EVGKFEEVVKELELENVLDRE 225 (607)
T ss_dssp TTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT----C---------CSSCHHHHHHHTTCTTGGGSB
T ss_pred eCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh----H---------HHHHHHHHHHHcCCCchhCCC
Confidence 567654211 12345788888643322 23899988631 0 013467799999999999999
Q ss_pred ccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEE
Q psy10236 172 VGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRV 251 (515)
Q Consensus 172 v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv 251 (515)
+++|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++| .|||+++|+. ..+..+||||
T Consensus 226 ~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g------~tvIivsHdl-~~~~~~adri 298 (607)
T 3bk7_A 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEG------KAVLVVEHDL-AVLDYLSDVI 298 (607)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTT------CEEEEECSCH-HHHHHHCSEE
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC------CEEEEEecCh-HHHHhhCCEE
Confidence 99999999999999999999999999999999999999999999999998766 8999999984 5788899999
Q ss_pred EEEeCCe
Q psy10236 252 LLVSGGR 258 (515)
Q Consensus 252 ~vL~~G~ 258 (515)
++|+++.
T Consensus 299 ~vl~~~~ 305 (607)
T 3bk7_A 299 HVVYGEP 305 (607)
T ss_dssp EEEESCT
T ss_pred EEECCCc
Confidence 9998653
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=8.2e-37 Score=331.97 Aligned_cols=195 Identities=19% Similarity=0.221 Sum_probs=160.6
Q ss_pred EE-EeeEEeCCCCCc-ceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEE---------EECCeeCCh--
Q psy10236 41 QV-RGLEVPPSSKNK-CFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQV---------ILNGHSIPL-- 107 (515)
Q Consensus 41 ~v-~~l~~~~~~~~~-~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I---------~~~G~~~~~-- 107 (515)
++ +||+++| +++ .+|+|+| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++..
T Consensus 22 ~~~~~ls~~y--g~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 22 QLEEDCVHRY--GVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp --CCCEEEEC--STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred hHhcCcEEEE--CCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 44 5889987 344 5899999 999999999999999999999999999999999985 456665421
Q ss_pred -h--hhccceEEEecCCCCCCC---CCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHH
Q psy10236 108 -N--ALKRRLVYVRSQSFLSPE---LNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELK 181 (515)
Q Consensus 108 -~--~~~~~i~yv~q~~~~~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerq 181 (515)
. ..+..+++++|.....+. .|+.|++.... ..++++++++.+||.+..++++++|||||||
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~-------------~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQ 165 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-------------ETGKLEEVVKALELENVLEREIQHLSGGELQ 165 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC-------------SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh-------------HHHHHHHHHHHcCCChhhhCChhhCCHHHHH
Confidence 1 123458899886544332 38888875310 0134677999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCe
Q psy10236 182 RLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258 (515)
Q Consensus 182 Rv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~ 258 (515)
||+||+||+.+|++|||||||++||+.++..+.+.|++++++| .|||+++|+ ..++..+||||++|++|.
T Consensus 166 Rv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g------~tvi~vsHd-~~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 166 RVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEG------KSVLVVEHD-LAVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT------CEEEEECSC-HHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC------CEEEEEeCC-HHHHHHhCCEEEEEcCcc
Confidence 9999999999999999999999999999999999999998766 899999997 457889999999998653
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=6.3e-36 Score=339.87 Aligned_cols=210 Identities=17% Similarity=0.228 Sum_probs=166.6
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEE
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~y 116 (515)
.++|+++|++++|..+++.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|. .+++|
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~--------~~I~y 740 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN--------CRIAY 740 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT--------CCEEE
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc--------cceEe
Confidence 4589999999988432367999999999999999999999999999999999999999999999863 25889
Q ss_pred EecCCCC----CCCCCHHHHHHHHhhcCC------------C-C------------------------------------
Q psy10236 117 VRSQSFL----SPELNVAQTLTFYSHLRR------------P-P------------------------------------ 143 (515)
Q Consensus 117 v~q~~~~----~~~lTv~e~l~~~~~~~~------------~-~------------------------------------ 143 (515)
++|+... ....|+.+++.+...... . .
T Consensus 741 v~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~ 820 (986)
T 2iw3_A 741 IKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECS 820 (986)
T ss_dssp ECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEE
T ss_pred eccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhh
Confidence 9886421 234688887765321000 0 0
Q ss_pred --------------CC-C---------------------------------chhhHHHHHHHHHHHcCCcc-c-ccCccc
Q psy10236 144 --------------KH-S---------------------------------IKVTTSEQMGLLIEELGLTQ-V-LSTRVG 173 (515)
Q Consensus 144 --------------~~-~---------------------------------~~~~~~~~v~~~l~~lgL~~-~-~~~~v~ 173 (515)
.. . .....+++++++++.+||.. . .+++++
T Consensus 821 ~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~ 900 (986)
T 2iw3_A 821 FLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIR 900 (986)
T ss_dssp EEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGG
T ss_pred hhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCcc
Confidence 00 0 00011356788999999975 3 689999
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEE
Q psy10236 174 RLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLL 253 (515)
Q Consensus 174 ~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~v 253 (515)
+|||||||||+|||+|+.+|+||||||||+|||+.+...+.+.|+++ + .+||+++|+. ..+..+||++++
T Consensus 901 ~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g------~tVIiISHD~-e~v~~l~DrViv 970 (986)
T 2iw3_A 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---E------GGVIIITHSA-EFTKNLTEEVWA 970 (986)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---S------SEEEEECSCH-HHHTTTCCEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---C------CEEEEEECCH-HHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999888754 3 5899999974 567889999999
Q ss_pred EeCCeEEEecC
Q psy10236 254 VSGGRTMYSGK 264 (515)
Q Consensus 254 L~~G~iv~~G~ 264 (515)
|++|+++..|+
T Consensus 971 L~~G~Iv~~G~ 981 (986)
T 2iw3_A 971 VKDGRMTPSGH 981 (986)
T ss_dssp CBTTBCCC---
T ss_pred EECCEEEEeCC
Confidence 99999987764
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=8.7e-36 Score=332.61 Aligned_cols=208 Identities=14% Similarity=0.226 Sum_probs=140.4
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHH---------------------HHHhCCCCCC-------eeEEEECCee
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAIL---------------------DALAGRNDAK-------AFQVILNGHS 104 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl---------------------~~L~G~~~~~-------~G~I~~~G~~ 104 (515)
++.+|+||||+|++||++||+||||||||||+ +++.|+.+|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34689999999999999999999999999998 8888988887 4566677765
Q ss_pred CChhhhccceEEEecCC-------------------CCCCCCCHHHHHHHHhhcCCCCCCC--chhhHH--HHHHHHHHH
Q psy10236 105 IPLNALKRRLVYVRSQS-------------------FLSPELNVAQTLTFYSHLRRPPKHS--IKVTTS--EQMGLLIEE 161 (515)
Q Consensus 105 ~~~~~~~~~i~yv~q~~-------------------~~~~~lTv~e~l~~~~~~~~~~~~~--~~~~~~--~~v~~~l~~ 161 (515)
... ..++.+++++|.. ..++.+||.||+.+........... .....+ .....+++.
T Consensus 110 ~~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 110 TSR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred hhc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 422 1233344444432 2346789999998753322111000 000000 112246889
Q ss_pred cCCccc-ccCcccCCChHHHHHHHHHHHHHhCCC--EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeC
Q psy10236 162 LGLTQV-LSTRVGRLTTSELKRLSIACCLMSHAD--ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQ 238 (515)
Q Consensus 162 lgL~~~-~~~~v~~LSGGerqRv~IA~aL~~~p~--lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h 238 (515)
+||.+. .++++++|||||||||+|||||+.+|+ ||||||||+|||+.++..+.++|++++++| .|||+++|
T Consensus 189 ~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g------~tvi~vtH 262 (670)
T 3ux8_A 189 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLG------NTLIVVEH 262 (670)
T ss_dssp TTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTT------CEEEEECC
T ss_pred cCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcC------CEEEEEeC
Confidence 999865 799999999999999999999999998 999999999999999999999999998766 89999999
Q ss_pred CCchHHHhhccEEEEE------eCCeEEEecCccchH
Q psy10236 239 PPTYEIFTMISRVLLV------SGGRTMYSGKRRDML 269 (515)
Q Consensus 239 ~~~~~i~~~~Drv~vL------~~G~iv~~G~~~~~~ 269 (515)
+. . ....||++++| ++|++++.|+++++.
T Consensus 263 d~-~-~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 263 DE-D-TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp CH-H-HHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred CH-H-HHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 85 3 45569999999 899999999998765
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.1e-34 Score=329.86 Aligned_cols=199 Identities=20% Similarity=0.247 Sum_probs=167.8
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYV 117 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv 117 (515)
..|...|++++| +++.+|+|+||++++||+++|+||||||||||+|+|+| |+| +|.+... ..+++|+
T Consensus 434 ~~L~~~~ls~~y--g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~---~~~~~~v 500 (986)
T 2iw3_A 434 EDLCNCEFSLAY--GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE---ECRTVYV 500 (986)
T ss_dssp CEEEEEEEEEEE--TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT---TSCEEET
T ss_pred ceeEEeeEEEEE--CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc---ceeEEEE
Confidence 357777999887 56789999999999999999999999999999999995 443 4544321 1247898
Q ss_pred ecCC-CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCChHHHHHHHHHHHHHhCCCE
Q psy10236 118 RSQS-FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLMSHADI 195 (515)
Q Consensus 118 ~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSGGerqRv~IA~aL~~~p~l 195 (515)
+|+. .+++.+||.|++.+ .... . ++++.++++.+||. +..++++++|||||||||+|||+|+.+|+|
T Consensus 501 ~q~~~~~~~~ltv~e~l~~--~~~~-------~--~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~l 569 (986)
T 2iw3_A 501 EHDIDGTHSDTSVLDFVFE--SGVG-------T--KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADI 569 (986)
T ss_dssp TCCCCCCCTTSBHHHHHHT--TCSS-------C--HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSE
T ss_pred cccccccccCCcHHHHHHH--hhcC-------H--HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 8874 67889999999975 1110 1 46788999999995 788999999999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEE-EecCccchHH
Q psy10236 196 LLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTM-YSGKRRDMLP 270 (515)
Q Consensus 196 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv-~~G~~~~~~~ 270 (515)
|||||||+|||+.++..+.+.|++ .| .|||+++|+ ..++.++||++++|++|+++ +.|+++++..
T Consensus 570 LLLDEPTs~LD~~~~~~l~~~L~~---~g------~tvIivSHd-l~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 570 LLLDEPTNHLDTVNVAWLVNYLNT---CG------ITSITISHD-SVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHH---SC------SEEEEECSC-HHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred EEEECCccCCCHHHHHHHHHHHHh---CC------CEEEEEECC-HHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999997 34 799999998 45788999999999999997 6898877653
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.8e-33 Score=313.93 Aligned_cols=197 Identities=15% Similarity=0.251 Sum_probs=151.5
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHh----------------------CCCCCCeeEEEECCeeCChhh--
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALA----------------------GRNDAKAFQVILNGHSIPLNA-- 109 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~----------------------G~~~~~~G~I~~~G~~~~~~~-- 109 (515)
..+|+||||+|++||++||+||||||||||+++|. |+.. .+|.|.++|.++....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~-~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH-LDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG-CSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc-cCceeEeccccCCCCCCc
Confidence 35799999999999999999999999999998764 3222 2468888887763100
Q ss_pred ---------------h---------------------------ccceEEEecCCCCCC----------------------
Q psy10236 110 ---------------L---------------------------KRRLVYVRSQSFLSP---------------------- 125 (515)
Q Consensus 110 ---------------~---------------------------~~~i~yv~q~~~~~~---------------------- 125 (515)
+ ....|++.|+..++|
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 0 011233333322222
Q ss_pred ----------CCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-cccCcccCCChHHHHHHHHHHHHHhCC-
Q psy10236 126 ----------ELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-VLSTRVGRLTTSELKRLSIACCLMSHA- 193 (515)
Q Consensus 126 ----------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSGGerqRv~IA~aL~~~p- 193 (515)
.+||.||+.+.... ...+++.+.++.+||.. ..++++++|||||||||+|||||+.+|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASI----------PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTC----------HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHh----------hhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 47899998875321 12345667888999964 568999999999999999999999987
Q ss_pred --CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE------eCCeEEEecCc
Q psy10236 194 --DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV------SGGRTMYSGKR 265 (515)
Q Consensus 194 --~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL------~~G~iv~~G~~ 265 (515)
+||||||||+|||+.++..++++|++++++| +|||+++|+.. ....||||++| ++|++++.|++
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g------~tvi~vtHd~~--~~~~~d~i~~l~~~~g~~~G~i~~~g~~ 635 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG------DTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 635 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTT------CEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEECH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEeCCHH--HHHhCCEEEEecCCcCCCCCEEEEecCH
Confidence 5999999999999999999999999998766 89999999853 44679999999 89999999999
Q ss_pred cchH
Q psy10236 266 RDML 269 (515)
Q Consensus 266 ~~~~ 269 (515)
+++.
T Consensus 636 ~~~~ 639 (670)
T 3ux8_A 636 EEVA 639 (670)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-34 Score=311.76 Aligned_cols=204 Identities=19% Similarity=0.281 Sum_probs=154.2
Q ss_pred CeEEEEee--------EEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEE-----------
Q psy10236 38 PHLQVRGL--------EVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQV----------- 98 (515)
Q Consensus 38 ~~L~v~~l--------~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I----------- 98 (515)
..|++.|| +++|. .+...|++++ .+++||++||+||||||||||||+|+|+++|++|+|
T Consensus 68 ~~i~i~nl~~~~~~~~~~~Y~-~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~ 145 (608)
T 3j16_B 68 DAIQIINLPTNLEAHVTHRYS-ANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIK 145 (608)
T ss_dssp CCEEEEEESSSSSTTEEEECS-TTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHH
T ss_pred cceEEecCChhhcCCeEEEEC-CCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhh
Confidence 35666665 45552 2334677777 689999999999999999999999999999999998
Q ss_pred EECCeeCCh---hhhccce--EEEecCCCC------CCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCccc
Q psy10236 99 ILNGHSIPL---NALKRRL--VYVRSQSFL------SPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV 167 (515)
Q Consensus 99 ~~~G~~~~~---~~~~~~i--~yv~q~~~~------~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 167 (515)
.+.|.++.. ....+.+ .+.+|.... -+..++.+++.... ....++++++++.+||.+.
T Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-----------~~~~~~~~~~l~~~gl~~~ 214 (608)
T 3j16_B 146 YFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-----------EKSPEDVKRYIKILQLENV 214 (608)
T ss_dssp HTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC-----------CSCHHHHHHHHHHHTCTGG
T ss_pred eecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh-----------hhHHHHHHHHHHHcCCcch
Confidence 233332211 0111222 233332111 11234555543210 1123568889999999999
Q ss_pred ccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhh
Q psy10236 168 LSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTM 247 (515)
Q Consensus 168 ~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~ 247 (515)
.++++++|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++| +|||+++|+ ..++..+
T Consensus 215 ~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g------~tvi~vtHd-l~~~~~~ 287 (608)
T 3j16_B 215 LKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT------KYVICVEHD-LSVLDYL 287 (608)
T ss_dssp GGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTT------CEEEEECSC-HHHHHHH
T ss_pred hCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCC------CEEEEEeCC-HHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998766 799999997 4688999
Q ss_pred ccEEEEEeCCeEEE
Q psy10236 248 ISRVLLVSGGRTMY 261 (515)
Q Consensus 248 ~Drv~vL~~G~iv~ 261 (515)
||||++|++|..++
T Consensus 288 ~drv~vl~~~~~~~ 301 (608)
T 3j16_B 288 SDFVCIIYGVPSVY 301 (608)
T ss_dssp CSEEEEEESCTTTE
T ss_pred CCEEEEEeCCcccc
Confidence 99999999876554
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.1e-33 Score=306.81 Aligned_cols=176 Identities=18% Similarity=0.234 Sum_probs=141.2
Q ss_pred EecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEE-----------EECCeeCChh---hh--ccceEEEecCCCCC---
Q psy10236 64 VKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQV-----------ILNGHSIPLN---AL--KRRLVYVRSQSFLS--- 124 (515)
Q Consensus 64 v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I-----------~~~G~~~~~~---~~--~~~i~yv~q~~~~~--- 124 (515)
+++||++||+||||||||||+|+|+|+++|++|+| .++|+++... .. ...+....|.....
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 35999999999999999999999999999999998 6777765211 11 12344444432221
Q ss_pred CCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q psy10236 125 PELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVF 204 (515)
Q Consensus 125 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsg 204 (515)
...++.+++.... .+++++++++.+|+.+..++++++|||||||||+||+||+.+|++|||||||++
T Consensus 102 ~~~~v~~~l~~~~-------------~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~ 168 (538)
T 3ozx_A 102 LKGTVNEILTKID-------------ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSY 168 (538)
T ss_dssp CCSBHHHHHHHHC-------------CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTT
T ss_pred ccCcHHHHhhcch-------------hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 2237877654210 112456789999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEE
Q psy10236 205 MDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTM 260 (515)
Q Consensus 205 LD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv 260 (515)
||+.++..+.+.|+++++ | +|||+++|+. .++..+||+|++|++|...
T Consensus 169 LD~~~~~~l~~~l~~l~~-g------~tii~vsHdl-~~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 169 LDVRERMNMAKAIRELLK-N------KYVIVVDHDL-IVLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp CCHHHHHHHHHHHHHHCT-T------SEEEEECSCH-HHHHHHCSEEEEEEEETTT
T ss_pred CCHHHHHHHHHHHHHHhC-C------CEEEEEEeCh-HHHHhhCCEEEEecCCccc
Confidence 999999999999999965 5 8999999984 6889999999999876543
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=7.5e-32 Score=303.81 Aligned_cols=208 Identities=17% Similarity=0.186 Sum_probs=159.4
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHH-HhCCC-------CC---------------
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDA-LAGRN-------DA--------------- 93 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~-L~G~~-------~~--------------- 93 (515)
.+.|+++|+++ ..|+|||++|++||++||+|+||||||||++. |+|.+ +|
T Consensus 500 ~~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 500 AGWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp SCEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred CceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 35799999975 15999999999999999999999999999996 76443 22
Q ss_pred ---Cee-------EEEECCeeCChh-------------hhc---------c----------------------ceEEEec
Q psy10236 94 ---KAF-------QVILNGHSIPLN-------------ALK---------R----------------------RLVYVRS 119 (515)
Q Consensus 94 ---~~G-------~I~~~G~~~~~~-------------~~~---------~----------------------~i~yv~q 119 (515)
.+| .|.++|.++... .++ + ..|++..
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 467 789998876311 011 1 1122211
Q ss_pred CCCCCC------------------------C--------CCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-
Q psy10236 120 QSFLSP------------------------E--------LNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ- 166 (515)
Q Consensus 120 ~~~~~~------------------------~--------lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~- 166 (515)
+..+.+ . +|+.|++.|... ....+++.++++.+||..
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~----------~~~~~~~~~~L~~~gL~~~ 722 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD----------ESAIFRALDTLREVGLGYL 722 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT----------SHHHHHHHHHHHHTTCTTS
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc----------chHHHHHHHHHHHcCCCcc
Confidence 111122 2 344444443211 112346788999999987
Q ss_pred cccCcccCCChHHHHHHHHHHHHHhC---CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchH
Q psy10236 167 VLSTRVGRLTTSELKRLSIACCLMSH---ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYE 243 (515)
Q Consensus 167 ~~~~~v~~LSGGerqRv~IA~aL~~~---p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~ 243 (515)
..++++.+|||||||||+||++|+.+ |+||||||||+|||+.++..+.++|++++++| .|||+++|+. ++
T Consensus 723 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G------~tVIvisHdl-~~ 795 (842)
T 2vf7_A 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG------NTVIAVEHKM-QV 795 (842)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTT------CEEEEECCCH-HH
T ss_pred cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC------CEEEEEcCCH-HH
Confidence 46899999999999999999999996 79999999999999999999999999998876 8999999984 45
Q ss_pred HHhhccEEEEE------eCCeEEEecCccchH
Q psy10236 244 IFTMISRVLLV------SGGRTMYSGKRRDML 269 (515)
Q Consensus 244 i~~~~Drv~vL------~~G~iv~~G~~~~~~ 269 (515)
+ ..||+|++| ++|++++.|+++++.
T Consensus 796 i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 796 V-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp H-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred H-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 5 889999999 799999999998764
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=1.8e-31 Score=301.31 Aligned_cols=207 Identities=16% Similarity=0.238 Sum_probs=161.5
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHh-CCC---------CCC-----ee------
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALA-GRN---------DAK-----AF------ 96 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~-G~~---------~~~-----~G------ 96 (515)
+.|+++|++. ..|+|||++|++||++||+|+||||||||+++|+ |.+ .+. .|
T Consensus 628 ~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 628 RWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp CEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred eEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 5799999863 2599999999999999999999999999999853 211 121 13
Q ss_pred EEEECCeeCChh-------------hh---------ccceEEEecCCCCC----------------------C-------
Q psy10236 97 QVILNGHSIPLN-------------AL---------KRRLVYVRSQSFLS----------------------P------- 125 (515)
Q Consensus 97 ~I~~~G~~~~~~-------------~~---------~~~i~yv~q~~~~~----------------------~------- 125 (515)
.|.++|.++... .. .+.+||++|...+. +
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 488888876310 00 12356666642221 1
Q ss_pred -------------------------CCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-cccCcccCCChHH
Q psy10236 126 -------------------------ELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-VLSTRVGRLTTSE 179 (515)
Q Consensus 126 -------------------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSGGe 179 (515)
.+||.|++.|.... ....++.++++.+||.. ..++++.+|||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~----------~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGe 850 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI----------PKIKRKLETLYDVGLGYMKLGQPATTLSGGE 850 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC----------HHHHHHHHHHHHTTCSSSBTTCCGGGCCHHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc----------hhHHHHHHHHHHcCCCcccccCchhhCCHHH
Confidence 45777777764211 11234567999999987 7899999999999
Q ss_pred HHHHHHHHHHHhCC---CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE--
Q psy10236 180 LKRLSIACCLMSHA---DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV-- 254 (515)
Q Consensus 180 rqRv~IA~aL~~~p---~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL-- 254 (515)
||||+||++|+.+| +||||||||+|||+.++..+++.|++++++| .|||+++|+. ++ ...||+|++|
T Consensus 851 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G------~TVIvisHdl-~~-i~~aDrIivL~p 922 (972)
T 2r6f_A 851 AQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG------DTVLVIEHNL-DV-IKTADYIIDLGP 922 (972)
T ss_dssp HHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTT------CEEEEECCCH-HH-HTTCSEEEEECS
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC------CEEEEEcCCH-HH-HHhCCEEEEEcC
Confidence 99999999999865 9999999999999999999999999998876 8999999984 34 4689999999
Q ss_pred ----eCCeEEEecCccchH
Q psy10236 255 ----SGGRTMYSGKRRDML 269 (515)
Q Consensus 255 ----~~G~iv~~G~~~~~~ 269 (515)
++|++++.|+++++.
T Consensus 923 ~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 923 EGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp SSTTSCCSEEEEESHHHHH
T ss_pred CCCCCCCEEEEecCHHHHH
Confidence 799999999998875
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=5.4e-31 Score=299.12 Aligned_cols=207 Identities=17% Similarity=0.297 Sum_probs=160.0
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHH---------HHHhCCCCCC------e------e
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAIL---------DALAGRNDAK------A------F 96 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl---------~~L~G~~~~~------~------G 96 (515)
..+++++.+ ...|+|||++|++||+++|+|+||||||||+ +.+.|...+. + +
T Consensus 588 ~~l~v~~~~-------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~ 660 (916)
T 3pih_A 588 ASLKIKGVR-------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDK 660 (916)
T ss_dssp SEEEEEEEC-------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCE
T ss_pred ceEEEeeec-------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccc
Confidence 457777764 2369999999999999999999999999997 4455443322 2 2
Q ss_pred EEEECCeeCChh-------------h-------------------------------hccceEEEecCCCCCC-------
Q psy10236 97 QVILNGHSIPLN-------------A-------------------------------LKRRLVYVRSQSFLSP------- 125 (515)
Q Consensus 97 ~I~~~G~~~~~~-------------~-------------------------------~~~~i~yv~q~~~~~~------- 125 (515)
.+.+++.++... . ..+..|++.++..++|
T Consensus 661 ~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~ 740 (916)
T 3pih_A 661 MIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECD 740 (916)
T ss_dssp EEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECT
T ss_pred eEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecc
Confidence 355555544110 0 0123577777665555
Q ss_pred -------------------------CCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-cccCcccCCChHH
Q psy10236 126 -------------------------ELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-VLSTRVGRLTTSE 179 (515)
Q Consensus 126 -------------------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSGGe 179 (515)
.+||.|++.|... .....++.++|+.+||.. ..++++.+|||||
T Consensus 741 ~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~----------~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGE 810 (916)
T 3pih_A 741 VCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKN----------IPSIKRTLQVLHDVGLGYVKLGQPATTLSGGE 810 (916)
T ss_dssp TTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTT----------CHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHH
T ss_pred cccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhc----------chhHHHHHHHHHHcCCchhhccCCccCCCHHH
Confidence 3678888877532 122356778999999964 4688999999999
Q ss_pred HHHHHHHHHHHhCC---CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE--
Q psy10236 180 LKRLSIACCLMSHA---DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV-- 254 (515)
Q Consensus 180 rqRv~IA~aL~~~p---~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL-- 254 (515)
||||+|||||+.+| +||||||||+|||+.++..+++.|++++++| .|||+++|+. + ....||+|++|
T Consensus 811 rQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G------~TVIvI~HdL-~-~i~~ADrIivLgp 882 (916)
T 3pih_A 811 AQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG------NTVIVIEHNL-D-VIKNADHIIDLGP 882 (916)
T ss_dssp HHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTT------CEEEEECCCH-H-HHTTCSEEEEEES
T ss_pred HHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC------CEEEEEeCCH-H-HHHhCCEEEEecC
Confidence 99999999999875 7999999999999999999999999998876 8999999985 3 44669999999
Q ss_pred ----eCCeEEEecCccchH
Q psy10236 255 ----SGGRTMYSGKRRDML 269 (515)
Q Consensus 255 ----~~G~iv~~G~~~~~~ 269 (515)
++|++++.|+++++.
T Consensus 883 ~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 883 EGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp SSGGGCCEEEEEESHHHHH
T ss_pred CCCCCCCEEEEEcCHHHHH
Confidence 899999999999886
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=7.1e-31 Score=297.39 Aligned_cols=208 Identities=16% Similarity=0.226 Sum_probs=158.9
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHh-C----CCC---CCee-------------
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALA-G----RND---AKAF------------- 96 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~-G----~~~---~~~G------------- 96 (515)
+.|+++|++. .+|+|||++|++||++||+|+||||||||+++|. | .+. +..|
T Consensus 646 ~~L~v~~l~~-------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 646 RQLTVVGARE-------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp SEEEEEEECS-------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred ceEEEecCcc-------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 5799999862 2599999999999999999999999999999853 2 221 1233
Q ss_pred EEEECCeeCChh-------------h---------hccceEEEecCCCC----------------------CC-------
Q psy10236 97 QVILNGHSIPLN-------------A---------LKRRLVYVRSQSFL----------------------SP------- 125 (515)
Q Consensus 97 ~I~~~G~~~~~~-------------~---------~~~~i~yv~q~~~~----------------------~~------- 125 (515)
.|.+++.++... . ..+..+|++|...+ .+
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 355666555210 0 01234666553221 11
Q ss_pred -------------------------CCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcc-cccCcccCCChHH
Q psy10236 126 -------------------------ELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-VLSTRVGRLTTSE 179 (515)
Q Consensus 126 -------------------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSGGe 179 (515)
.+||.|++.|.... ....++.++++.+||.. ..++++.+|||||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~----------~~~~~~~~~L~~lgL~~~~l~~~~~~LSGGe 868 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI----------AGVHRYLRTLVDVGLGYVRLGQPAPTLSGGE 868 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC----------HHHHHHHHHHHHTTGGGSBTTCCGGGSCHHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc----------hHHHHHHHHHHHcCCCcccccCccccCCHHH
Confidence 35677777654321 11234568999999987 7899999999999
Q ss_pred HHHHHHHHHHHhCC---CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE--
Q psy10236 180 LKRLSIACCLMSHA---DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV-- 254 (515)
Q Consensus 180 rqRv~IA~aL~~~p---~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL-- 254 (515)
||||+||++|+.+| +||||||||+|||+.++..+++.|++++++| .|||+++|+. +. ...||+|++|
T Consensus 869 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G------~TVIvisHdl-~~-i~~aDrIivL~p 940 (993)
T 2ygr_A 869 AQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKG------NTVIVIEHNL-DV-IKTSDWIIDLGP 940 (993)
T ss_dssp HHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTT------CEEEEECCCH-HH-HTTCSEEEEEES
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC------CEEEEEcCCH-HH-HHhCCEEEEECC
Confidence 99999999999865 9999999999999999999999999998776 8999999984 34 4789999999
Q ss_pred ----eCCeEEEecCccchHH
Q psy10236 255 ----SGGRTMYSGKRRDMLP 270 (515)
Q Consensus 255 ----~~G~iv~~G~~~~~~~ 270 (515)
++|++++.|+++++..
T Consensus 941 ~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 941 EGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp SSTTSCSEEEEEECHHHHHH
T ss_pred CcCCCCCEEEEecCHHHHHh
Confidence 7899999999988753
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.8e-34 Score=304.78 Aligned_cols=198 Identities=11% Similarity=0.051 Sum_probs=158.0
Q ss_pred cCeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCee-E-EEECCeeCChhhhccce
Q psy10236 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAF-Q-VILNGHSIPLNALKRRL 114 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G-~-I~~~G~~~~~~~~~~~i 114 (515)
.++++++||++.| .++|+++++||+++|+||||||||||+|+|+|+.+|++| + |.++|. .++.+
T Consensus 116 ~~mi~~~nl~~~y--------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~------~~~~i 181 (460)
T 2npi_A 116 HTMKYIYNLHFML--------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD------PQQPI 181 (460)
T ss_dssp CTHHHHHHHHHHH--------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC------TTSCS
T ss_pred cchhhhhhhhehh--------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC------ccCCe
Confidence 4578888887765 279999999999999999999999999999999999999 9 999982 26779
Q ss_pred EEEecCCC---CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHH--H
Q psy10236 115 VYVRSQSF---LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACC--L 189 (515)
Q Consensus 115 ~yv~q~~~---~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~a--L 189 (515)
+|++|+.. +.+.+|+.||+ +......... ..+++.++++.+|+.+..+ +.+|||||||||+|||+ |
T Consensus 182 ~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~------~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL 252 (460)
T 2npi_A 182 FTVPGCISATPISDILDAQLPT-WGQSLTSGAT------LLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRL 252 (460)
T ss_dssp SSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCC------SSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHH
T ss_pred eeeccchhhcccccccchhhhh-cccccccCcc------hHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHh
Confidence 99999874 45567999988 5433211110 0123445778899987776 88999999999999999 9
Q ss_pred HhCCCE----EEEeC-CCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCc---h--HHHhhccE-----EEEE
Q psy10236 190 MSHADI----LLLDC-PTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPT---Y--EIFTMISR-----VLLV 254 (515)
Q Consensus 190 ~~~p~l----LlLDE-PtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~---~--~i~~~~Dr-----v~vL 254 (515)
+.+|++ ||||| ||++||+. ...+.++++++ + .++|+++|+.. . ++.++||| |++|
T Consensus 253 ~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~---~------~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l 322 (460)
T 2npi_A 253 HLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL---N------VNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFI 322 (460)
T ss_dssp HHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT---T------CCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEE
T ss_pred ccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh---C------CCEEEEEccCchhhhHHHHHHhcccccCCEEEEE
Confidence 999999 99999 99999999 55555555543 3 56777777654 1 56689999 9999
Q ss_pred e-CCeEEEecCccch
Q psy10236 255 S-GGRTMYSGKRRDM 268 (515)
Q Consensus 255 ~-~G~iv~~G~~~~~ 268 (515)
+ +|+++ .|+++++
T Consensus 323 ~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 323 PKLDGVS-AVDDVYK 336 (460)
T ss_dssp CCCTTCC-CCCHHHH
T ss_pred eCCCcEE-ECCHHHH
Confidence 9 99999 8987655
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=3.5e-29 Score=263.36 Aligned_cols=198 Identities=18% Similarity=0.161 Sum_probs=145.5
Q ss_pred ceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC--------------------------------------CCee
Q psy10236 55 CFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND--------------------------------------AKAF 96 (515)
Q Consensus 55 ~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~--------------------------------------~~~G 96 (515)
.+++++|+++.+| +++|+|||||||||||++|+++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4699999999999 999999999999999999976653 4578
Q ss_pred EEEECCeeCChh---hh-ccceEEEecCCCCCCCCCHHHHHHHHhhcCC-----------------------CCCCC---
Q psy10236 97 QVILNGHSIPLN---AL-KRRLVYVRSQSFLSPELNVAQTLTFYSHLRR-----------------------PPKHS--- 146 (515)
Q Consensus 97 ~I~~~G~~~~~~---~~-~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~-----------------------~~~~~--- 146 (515)
++++||++++.. .+ +..+++++|++.++.. +..+...|...... .....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 999999998642 22 3448999998765533 55444443221100 00000
Q ss_pred ------------------------------chhhHHHHHHHHHHHcCCccc-----------------------cc----
Q psy10236 147 ------------------------------IKVTTSEQMGLLIEELGLTQV-----------------------LS---- 169 (515)
Q Consensus 147 ------------------------------~~~~~~~~v~~~l~~lgL~~~-----------------------~~---- 169 (515)
........+.+.++.+++.+. ..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000011234455666665431 00
Q ss_pred ---CcccC-CChHHHHHHHHHHHHHhCC--CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchH
Q psy10236 170 ---TRVGR-LTTSELKRLSIACCLMSHA--DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYE 243 (515)
Q Consensus 170 ---~~v~~-LSGGerqRv~IA~aL~~~p--~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~ 243 (515)
+++.. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ +| .+||+++|++ +
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~------~~vi~itH~~--~ 357 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DT------RQVLVVTHLA--Q 357 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TT------SEEEEECSCH--H
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CC------CEEEEEeCcH--H
Confidence 23333 6999999999999999999 9999999999999999999999999997 45 7999999985 5
Q ss_pred HHhhccEEEEE----eCCeEEEec
Q psy10236 244 IFTMISRVLLV----SGGRTMYSG 263 (515)
Q Consensus 244 i~~~~Drv~vL----~~G~iv~~G 263 (515)
+...||++++| .+|+++...
T Consensus 358 ~~~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 358 IAARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp HHTTCSEEEEEEEEEETTEEEEEE
T ss_pred HHhhcCeEEEEEEeccCCceEEEE
Confidence 67899999999 999988764
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.94 E-value=3.1e-26 Score=237.56 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=77.4
Q ss_pred cCcccCCChHHHHHHHHHHHHH------hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCch
Q psy10236 169 STRVGRLTTSELKRLSIACCLM------SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTY 242 (515)
Q Consensus 169 ~~~v~~LSGGerqRv~IA~aL~------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~ 242 (515)
++++.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++| +|||+++|+.
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g------~tvi~itH~~-- 345 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLN------KVIVFITHDR-- 345 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSS------SEEEEEESCH--
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC------CEEEEEecch--
Confidence 5788899999999999999999 6999999999999999999999999999998766 8999999985
Q ss_pred HHHhhccEEEEEeCCeEEE
Q psy10236 243 EIFTMISRVLLVSGGRTMY 261 (515)
Q Consensus 243 ~i~~~~Drv~vL~~G~iv~ 261 (515)
+....||++++|++|+++.
T Consensus 346 ~~~~~~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 346 EFSEAFDRKLRITGGVVVN 364 (365)
T ss_dssp HHHTTCSCEEEEETTEEC-
T ss_pred HHHHhCCEEEEEECCEEEe
Confidence 3478899999999999874
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=5.1e-26 Score=232.01 Aligned_cols=200 Identities=11% Similarity=0.087 Sum_probs=126.4
Q ss_pred eeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC----------------------------------------------
Q psy10236 58 QGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN---------------------------------------------- 91 (515)
Q Consensus 58 ~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~---------------------------------------------- 91 (515)
+++++++.+| +++|+||||||||||+++|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 4678899999 99999999999999999998443
Q ss_pred ----CCCeeEEEECCeeCChhh---hccceEEEecCCCCCCCCCHHHHHHHHhhcCC----------CCCCCch------
Q psy10236 92 ----DAKAFQVILNGHSIPLNA---LKRRLVYVRSQSFLSPELNVAQTLTFYSHLRR----------PPKHSIK------ 148 (515)
Q Consensus 92 ----~~~~G~I~~~G~~~~~~~---~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~----------~~~~~~~------ 148 (515)
.+.+|.+.+||++..... ....+++.+|+..+++.-++.+++.....-+. .+.....
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 233578899998874322 22344444443332222233333221110000 0000000
Q ss_pred --------------hhHHHHHHHHHHH-cCC----cccccCcccCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCC
Q psy10236 149 --------------VTTSEQMGLLIEE-LGL----TQVLSTRVGRLTTSELKRLSIACCLM----SHADILLLDCPTVFM 205 (515)
Q Consensus 149 --------------~~~~~~v~~~l~~-lgL----~~~~~~~v~~LSGGerqRv~IA~aL~----~~p~lLlLDEPtsgL 205 (515)
.....++.++++. +++ .+..++++.+||||||||++||++|+ .+|++|||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 0000111223332 222 23467788999999999999999997 588999999999999
Q ss_pred ChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEE--EEEeCCe-EEEecCccc
Q psy10236 206 DIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRV--LLVSGGR-TMYSGKRRD 267 (515)
Q Consensus 206 D~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv--~vL~~G~-iv~~G~~~~ 267 (515)
|+..+..+.+.|++++ ++ .++|+++|++ ++.+.||++ ++|.+|+ .+.....++
T Consensus 255 D~~~~~~l~~~l~~~~-~~------~~vi~~tH~~--~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 255 DDYNAERFKRLLKENS-KH------TQFIVITHNK--IVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CHHHHHHHHHHHHHHT-TT------SEEEEECCCT--TGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CHHHHHHHHHHHHHhc-CC------CeEEEEECCH--HHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 9999999999999984 34 7899999984 578899987 7787775 444455544
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.93 E-value=3.8e-29 Score=239.67 Aligned_cols=141 Identities=14% Similarity=0.132 Sum_probs=103.5
Q ss_pred CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC--hhhhccceEEEecCCCCCCCCCH
Q psy10236 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP--LNALKRRLVYVRSQSFLSPELNV 129 (515)
Q Consensus 52 ~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~--~~~~~~~i~yv~q~~~~~~~lTv 129 (515)
+++.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|.. .++. ....++.++|++|+.
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecCCchhhhcceEEecCCH--------
Confidence 456789996 89999999999999999999999999 999999843 2221 123467799999975
Q ss_pred HHHH-HHH----hhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q psy10236 130 AQTL-TFY----SHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVF 204 (515)
Q Consensus 130 ~e~l-~~~----~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsg 204 (515)
.||+ .+. ..+.... ..++++++++. |+ ||||||+|||||+.+|++|||||||+|
T Consensus 76 ~enl~~~~~~~~~~~~~~~-------~~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDMV-------EPEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp ----CTTTHHHHHHHTTTS-------CTTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred HHHHHHHHHHHHHHHHHhc-------cHHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 4444 221 1111100 11345566665 44 999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCC
Q psy10236 205 MDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPP 240 (515)
Q Consensus 205 LD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~ 240 (515)
++..+.+.|+++ ++| +||| ++|+.
T Consensus 135 ----~~~~l~~~l~~l-~~g------~tii-vtHd~ 158 (208)
T 3b85_A 135 ----TPAQMKMFLTRL-GFG------SKMV-VTGDI 158 (208)
T ss_dssp ----CHHHHHHHHTTB-CTT------CEEE-EEEC-
T ss_pred ----cHHHHHHHHHHh-cCC------CEEE-EECCH
Confidence 899999999988 444 7888 88875
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.91 E-value=2.4e-27 Score=248.59 Aligned_cols=174 Identities=8% Similarity=0.049 Sum_probs=137.5
Q ss_pred cceeeeeEEEEecCe--------------------EEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccc
Q psy10236 54 KCFVQGVSFEVKGSE--------------------VLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRR 113 (515)
Q Consensus 54 ~~iL~~vs~~v~~Ge--------------------i~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~ 113 (515)
+.+|++||+++++|| ++||+||||||||||+|+|+|+.+|++|+|.++|.+.+ +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t----~-- 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT----M-- 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC--------C--
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc----e--
Confidence 568999999999999 99999999999999999999999999999999997653 2
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChH--HHHHHHHHHHHHh
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTS--ELKRLSIACCLMS 191 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGG--erqRv~IA~aL~~ 191 (515)
.++++|++ .++.+|+.|++.+.. . +.+++++++.+++.+.. ..+. |||| |+||+.||++|+.
T Consensus 110 ~~~v~q~~-~~~~ltv~D~~g~~~----~---------~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~ 173 (413)
T 1tq4_A 110 ERHPYKHP-NIPNVVFWDLPGIGS----T---------NFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISM 173 (413)
T ss_dssp CCEEEECS-SCTTEEEEECCCGGG----S---------SCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHH
T ss_pred eEEecccc-ccCCeeehHhhcccc----h---------HHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHh
Confidence 27888874 577889988865431 0 12356789999987653 3444 9999 9999999999999
Q ss_pred ----------CCCEEEEeCCCCCCChhhHHHHHHHHHHHH-----hCCCCCCCCcEEEEEeCCCch-HHHhhccEE
Q psy10236 192 ----------HADILLLDCPTVFMDIFDTFFLVEFLRGWA-----SGGPAGMAGKMVILTLQPPTY-EIFTMISRV 251 (515)
Q Consensus 192 ----------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~-----~~g~~~~~~~tiiis~h~~~~-~i~~~~Drv 251 (515)
+|++++|||||+|||+.++.++.+.|+++. +.|. ....+|++++|.... .+.++||++
T Consensus 174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~--~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI--AEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC--SSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC--CCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999999999999999999999999985 2220 012567788876432 266677665
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.91 E-value=1.2e-25 Score=210.10 Aligned_cols=146 Identities=9% Similarity=0.017 Sum_probs=105.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKH 145 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~ 145 (515)
.++|+||||||||||+++|+|++. |.++|.+... ...++.++|++|+. ++.+++ + +.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~---- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFF---- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETTC----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-HhhcC----
Confidence 589999999999999999999985 4455543311 13457799999975 222222 0 11000
Q ss_pred CchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHH-----HHhCCCEEEEeC--CCCCCChhhHHHHHHHHH
Q psy10236 146 SIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACC-----LMSHADILLLDC--PTVFMDIFDTFFLVEFLR 218 (515)
Q Consensus 146 ~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~a-----L~~~p~lLlLDE--PtsgLD~~~~~~i~~~L~ 218 (515)
.-.+..++++.+||||||||++||++ ++.+|++++||| ||++||+..+..+.+.|+
T Consensus 65 -----------------~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 65 -----------------TSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp -----------------CCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred -----------------CccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 00135678889999999999999996 999999999999 999999999999988887
Q ss_pred HHHhCCCCCCCCcEEEEEeC--CCchHHHhhccEEEEEeCCeEEE
Q psy10236 219 GWASGGPAGMAGKMVILTLQ--PPTYEIFTMISRVLLVSGGRTMY 261 (515)
Q Consensus 219 ~l~~~g~~~~~~~tiiis~h--~~~~~i~~~~Drv~vL~~G~iv~ 261 (515)
+ .+ .++|+++| |+...+..+||| .+|+++.
T Consensus 128 ~---~~------~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D---PN------VNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C---TT------SEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c---CC------CeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 5 22 66777776 566778888998 5566655
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=1.5e-25 Score=207.76 Aligned_cols=143 Identities=8% Similarity=0.058 Sum_probs=97.8
Q ss_pred eeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhh
Q psy10236 59 GVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSH 138 (515)
Q Consensus 59 ~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~ 138 (515)
||||++++||+++|+||||||||||++++.+- ...+ ....++ ++++|+... ..+.....
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~------~~~~-----~~d~~~---g~~~~~~~~---~~~~~~~~---- 59 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP------TEVI-----SSDFCR---GLMSDDEND---QTVTGAAF---- 59 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG------GGEE-----EHHHHH---HHHCSSTTC---GGGHHHHH----
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC------CeEE-----ccHHHH---HHhcCcccc---hhhHHHHH----
Confidence 68999999999999999999999999996531 1111 111122 445554321 01111000
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChh----------
Q psy10236 139 LRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIF---------- 208 (515)
Q Consensus 139 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~---------- 208 (515)
... ..........|.....+. ....|||||||++||++++.+|++|+|||||++||+.
T Consensus 60 ----------~~~-~~~~~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~ 127 (171)
T 4gp7_A 60 ----------DVL-HYIVSKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVE 127 (171)
T ss_dssp ----------HHH-HHHHHHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCC
T ss_pred ----------HHH-HHHHHHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCC
Confidence 000 111112233455444433 3456999999999999999999999999999999999
Q ss_pred ------hHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCC
Q psy10236 209 ------DTFFLVEFLRGWASGGPAGMAGKMVILTLQPP 240 (515)
Q Consensus 209 ------~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~ 240 (515)
.+.++.+.|++++++| .|+|+++|++
T Consensus 128 ~~vi~~~~~~l~~~l~~l~~~g------~tvi~vtH~~ 159 (171)
T 4gp7_A 128 EYVIRKHTQQMKKSIKGLQREG------FRYVYILNSP 159 (171)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHT------CSEEEEECSH
T ss_pred HHHHHHHHHHhhhhhhhHHhcC------CcEEEEeCCH
Confidence 5689999999887766 8899999974
No 72
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.89 E-value=3.5e-25 Score=223.75 Aligned_cols=174 Identities=10% Similarity=0.074 Sum_probs=137.6
Q ss_pred eeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChh-------hh--ccceEEEecCCC-CCCC
Q psy10236 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLN-------AL--KRRLVYVRSQSF-LSPE 126 (515)
Q Consensus 57 L~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~-------~~--~~~i~yv~q~~~-~~~~ 126 (515)
++++|+++++|++++|+||||||||||++.|+|+++|++|+|.++|.+.... .+ +..++|++|++. ++|.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 4678999999999999999999999999999999999999999999887431 12 346999999988 8899
Q ss_pred CCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC--EEEEeCCCCC
Q psy10236 127 LNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD--ILLLDCPTVF 204 (515)
Q Consensus 127 lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~--lLlLDEPtsg 204 (515)
+|+.|++.++... . . . ..+++.+|+.+..++.+++|| |||++|||+|+.+|+ +|+|| ||+|
T Consensus 170 ~~v~e~l~~~~~~-~-~----d-------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 170 TVLSKAVKRGKEE-G-Y----D-------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHHT-T-C----S-------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHHc-C-C----c-------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 9999999875421 1 0 0 124667888888888999999 999999999999999 99999 9999
Q ss_pred CChhhHHHHHHHHHHHHh-CCCCCCCCcEEEEEeCCCc--------hHHHhhccEEEEEeCCeE
Q psy10236 205 MDIFDTFFLVEFLRGWAS-GGPAGMAGKMVILTLQPPT--------YEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 205 LD~~~~~~i~~~L~~l~~-~g~~~~~~~tiiis~h~~~--------~~i~~~~Drv~vL~~G~i 259 (515)
||+.++ ++++.+ .| .++|+++|.+. ..+....+.|.++..|+.
T Consensus 233 lD~~~~------~~~~~~~~g------~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 233 LNMLPQ------AREFNEVVG------ITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGHHH------HHHHHHHTC------CCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred cCHHHH------HHHHHHhcC------CCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 999865 244543 34 67888888432 233455678888988865
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.89 E-value=1.5e-27 Score=227.73 Aligned_cols=183 Identities=11% Similarity=0.002 Sum_probs=123.2
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHH
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQT 132 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~ 132 (515)
.+.+++| .++++||+++|+||||||||||+|+|+|+++...+.+.+.+.+.. ...++.++|++|+...++.+|+.++
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~~ 84 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQGE 84 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTTC
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcCC
Confidence 4567888 799999999999999999999999999998643332222221111 1235679999998877777777776
Q ss_pred HHHHhhcCC--CCCCCchhhHHHHHHHH------HHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q psy10236 133 LTFYSHLRR--PPKHSIKVTTSEQMGLL------IEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVF 204 (515)
Q Consensus 133 l~~~~~~~~--~~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsg 204 (515)
+........ ........+.++++++. ++.+|+.+..++.++.|| +|+.+|++++|||||+|
T Consensus 85 l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~ 153 (207)
T 1znw_A 85 LLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIG 153 (207)
T ss_dssp EEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHT
T ss_pred ceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHh
Confidence 532211110 00001122344555555 666777777788888888 89999999999999999
Q ss_pred C----ChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe
Q psy10236 205 M----DIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS 255 (515)
Q Consensus 205 L----D~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~ 255 (515)
+ |+..+.++.+.+++++++. +.++|+++|+ .+++.++||||++|.
T Consensus 154 l~~~~d~~~~~~l~~~l~~l~~~~-----g~tvi~vtHd-l~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 154 RGTETADVIQRRLDTARIELAAQG-----DFDKVVVNRR-LESACAELVSLLVGT 202 (207)
T ss_dssp TSCSCHHHHHHHHHHHHHHHHGGG-----GSSEEEECSS-HHHHHHHHHHHHC--
T ss_pred cCCCCHHHHHHHHHHHHHHHhhhc-----cCcEEEECCC-HHHHHHHHHHHHHhc
Confidence 8 7779999999999997542 3789999987 568999999999984
No 74
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.89 E-value=8.4e-28 Score=242.44 Aligned_cols=169 Identities=10% Similarity=0.078 Sum_probs=126.3
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEe
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVR 118 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~ 118 (515)
+|+++||++.|. +.+|+|+|++|++||+++|+||||||||||+++|+|++ +|+|. +|++
T Consensus 101 ~i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~---------------~~v~ 159 (305)
T 2v9p_A 101 FFNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL---------------SFAN 159 (305)
T ss_dssp HHHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE---------------CGGG
T ss_pred eEEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE---------------EEec
Confidence 589999999873 67999999999999999999999999999999999998 78883 3456
Q ss_pred cCCCCCCCCCHHH-HHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 119 SQSFLSPELNVAQ-TLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 119 q~~~~~~~lTv~e-~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
|++.+++. |+++ |+.+.... . ..+.+.++.+ |.+..+ ..+|||||||| ||||+.+|+|||
T Consensus 160 q~~~lf~~-ti~~~ni~~~~~~--------~----~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl 220 (305)
T 2v9p_A 160 HKSHFWLA-SLADTRAALVDDA--------T----HACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV 220 (305)
T ss_dssp TTSGGGGG-GGTTCSCEEEEEE--------C----HHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE
T ss_pred Cccccccc-cHHHHhhccCccc--------c----HHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE
Confidence 66555543 5655 55442100 0 1334455554 444444 67899999999 999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHHHHHh
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFAA 274 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~~f~~ 274 (515)
|++||+.+...+.. + +|.+ +..+.||+| +|++|++++.|+++++...|..
T Consensus 221 ----Ts~LD~~~~~~i~~----l----------------tH~~--~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 221 ----TSNIDVQAEDRYLY----L----------------HSRV--QTFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp ----EESSCSTTCGGGGG----G----------------TTTE--EEEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred ----ECCCCHHHHHHHHH----H----------------hCCH--HHHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 99999999877741 1 3443 245689999 9999999999999887554443
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.88 E-value=2.8e-25 Score=221.14 Aligned_cols=146 Identities=13% Similarity=0.123 Sum_probs=98.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCch
Q psy10236 69 VLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIK 148 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~ 148 (515)
.++|+||||||||||+|+|+|+..|++|+|.++|+++.....++.++|++|++.+++.+||.||+.|+......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~------ 77 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE------ 77 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH------
Confidence 47999999999999999999999999999999999875545567899999999999999999999887543221
Q ss_pred hhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCC
Q psy10236 149 VTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGM 228 (515)
Q Consensus 149 ~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~ 228 (515)
...+.+.+.++ ....+..+.+||||||||+++||+++. ++++|||+.|||+.. .+.++.+++.
T Consensus 78 -~~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~----- 140 (270)
T 3sop_A 78 -NCWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV----- 140 (270)
T ss_dssp -TCSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-----
T ss_pred -HHHHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-----
Confidence 11122333333 455677788999999999999999876 999999999999987 4555666542
Q ss_pred CCcEEEEEeCC
Q psy10236 229 AGKMVILTLQP 239 (515)
Q Consensus 229 ~~~tiiis~h~ 239 (515)
.++|+++|.
T Consensus 141 --~~vI~Vi~K 149 (270)
T 3sop_A 141 --VNIIPVIAK 149 (270)
T ss_dssp --SEEEEEETT
T ss_pred --CcEEEEEec
Confidence 466666665
No 76
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.87 E-value=1.3e-25 Score=237.70 Aligned_cols=197 Identities=13% Similarity=0.074 Sum_probs=154.3
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCe---eCCh-------
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGH---SIPL------- 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~---~~~~------- 107 (515)
+.++++++++.|. .+..+|+++ +++.+||+++|+||||||||||+++|+|+.+|++|.|.++|+ ++..
T Consensus 130 ~~l~~~~v~~~~~-tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLD-TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCC-CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecC-CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 4689999998873 256799999 999999999999999999999999999999999999999998 4421
Q ss_pred -hhhccceEEEecC-CCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHH
Q psy10236 108 -NALKRRLVYVRSQ-SFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSI 185 (515)
Q Consensus 108 -~~~~~~i~yv~q~-~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~I 185 (515)
...++.++|++|+ ...++.+|+.+|+.+.+....... + ......+ .+..||+|| |||+|
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~--------~---------~v~~~ld-~l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG--------Q---------HVLLIMD-SLTRYAMAQ-REIAL 268 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT--------C---------EEEEEEE-CHHHHHHHH-HHHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC--------C---------CHHHHHH-hHHHHHHHH-HHHHH
Confidence 2356789999995 556778899999887654321100 0 0011112 256799999 99999
Q ss_pred HHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCc-----EEEEEeCCCchHHHhhccEEEEEeCCeEE
Q psy10236 186 ACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGK-----MVILTLQPPTYEIFTMISRVLLVSGGRTM 260 (515)
Q Consensus 186 A~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~-----tiiis~h~~~~~i~~~~Drv~vL~~G~iv 260 (515)
| +.+|++ |+|||+.....+.++++++.+.. +..|+ ||++++|+.. ..+||++++|.+|+++
T Consensus 269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~--~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Iv 334 (438)
T 2dpy_A 269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGI--HGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIV 334 (438)
T ss_dssp H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCS--TTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEE
T ss_pred H---hCCCcc------cccCCHHHHHHHHHHHHHHHhcc--CCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEE
Confidence 9 888888 99999999999999999886510 00135 8888888764 5789999999999999
Q ss_pred EecCccchH
Q psy10236 261 YSGKRRDML 269 (515)
Q Consensus 261 ~~G~~~~~~ 269 (515)
..|+++++.
T Consensus 335 l~~~~~~~~ 343 (438)
T 2dpy_A 335 LSRRLAEAG 343 (438)
T ss_dssp ECHHHHHTT
T ss_pred EeCCHHHcc
Confidence 999876653
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.87 E-value=5.1e-24 Score=219.62 Aligned_cols=173 Identities=10% Similarity=0.078 Sum_probs=138.4
Q ss_pred eeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChh-------hh--ccceEEEecCCC-CCCCC
Q psy10236 58 QGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLN-------AL--KRRLVYVRSQSF-LSPEL 127 (515)
Q Consensus 58 ~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~-------~~--~~~i~yv~q~~~-~~~~l 127 (515)
+++|+++++|++++|+||||||||||++.|+|+++|++|+|.++|.++... .+ +..++|++|+.. ++|.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 468899999999999999999999999999999999999999999887421 12 357999999988 88999
Q ss_pred CHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC--EEEEeCCCCCC
Q psy10236 128 NVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD--ILLLDCPTVFM 205 (515)
Q Consensus 128 Tv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~--lLlLDEPtsgL 205 (515)
|+.|++.++... . . . ..+++.+|+.+..++.+.+|| |||++|||+|+.+|+ +|+|| ||+||
T Consensus 228 tv~e~l~~~~~~-~-~----d-------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 228 VLSKAVKRGKEE-G-Y----D-------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHHT-T-C----S-------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred hHHHHHHHHHhC-C-C----H-------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 999999876421 1 0 0 124567888888888899999 999999999999999 99999 99999
Q ss_pred ChhhHHHHHHHHHHHHh-CCCCCCCCcEEEEEeCCC--------chHHHhhccEEEEEeCCeE
Q psy10236 206 DIFDTFFLVEFLRGWAS-GGPAGMAGKMVILTLQPP--------TYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 206 D~~~~~~i~~~L~~l~~-~g~~~~~~~tiiis~h~~--------~~~i~~~~Drv~vL~~G~i 259 (515)
|+.++. +++.+ .| .|+|+++|.+ ...+....+.|.++..|+.
T Consensus 291 D~~~~~------~~~~~~~g------~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 291 NMLPQA------REFNEVVG------ITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGHHHH------HHHHHHTC------CCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CHHHHH------HHHHHhcC------CeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 998653 34443 24 7888888843 1233456678888888864
No 78
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.85 E-value=8.4e-26 Score=217.79 Aligned_cols=155 Identities=7% Similarity=-0.050 Sum_probs=102.6
Q ss_pred ceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----hhhccceEEEecCCCCCCCCCH-
Q psy10236 55 CFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----NALKRRLVYVRSQSFLSPELNV- 129 (515)
Q Consensus 55 ~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~~lTv- 129 (515)
.-|+||||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++.. ...++.++|++|+...++.++.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4699999999999999999999999999999999998 5 99999 876522 1235678999998655543321
Q ss_pred HHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHH-----HHHHHhCCCEEEEeCCCCC
Q psy10236 130 AQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSI-----ACCLMSHADILLLDCPTVF 204 (515)
Q Consensus 130 ~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~I-----A~aL~~~p~lLlLDEPtsg 204 (515)
.+++.+ ..+... .... ....++++++...+. ..+ .+|||||+||++| +++++.+|++++|||||++
T Consensus 87 ~~~l~~-~~~~~~---~~g~-~~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~ 157 (218)
T 1z6g_A 87 EDFLEY-DNYANN---FYGT-LKSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLT 157 (218)
T ss_dssp TCEEEE-EEETTE---EEEE-EHHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHH
T ss_pred cchhhh-hhcccc---cCCC-cHHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHh
Confidence 111110 000000 0001 123456666654432 122 5789999999999 8999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHh
Q psy10236 205 MDIFDTFFLVEFLRGWAS 222 (515)
Q Consensus 205 LD~~~~~~i~~~L~~l~~ 222 (515)
+|..+...+.+.|+++.+
T Consensus 158 ~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 158 RNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp TCCCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 999999999999988754
No 79
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.85 E-value=4.2e-23 Score=211.12 Aligned_cols=132 Identities=11% Similarity=0.059 Sum_probs=107.8
Q ss_pred eeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEEecCCCCCCCCCHHHHHH
Q psy10236 56 FVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYVRSQSFLSPELNVAQTLT 134 (515)
Q Consensus 56 iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTv~e~l~ 134 (515)
+++++|+.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+... ...++.++++.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~---------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFF---------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEEC----------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEe----------------
Confidence 7899999999999999999999999999999999999999999999864211 11223333332
Q ss_pred HHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHH
Q psy10236 135 FYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLV 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~ 214 (515)
+ |||+||++||+||..+|+++++||||+ .++.
T Consensus 224 --------------------------------------g---gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~ 255 (330)
T 2pt7_A 224 --------------------------------------G---GNITSADCLKSCLRMRPDRIILGELRS-------SEAY 255 (330)
T ss_dssp --------------------------------------B---TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHH
T ss_pred --------------------------------------C---CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHH
Confidence 0 899999999999999999999999998 2456
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 215 EFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 215 ~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
+.|+.+...+ .++++++|.+. +.+.|||+++|.+|+.
T Consensus 256 ~~l~~~~~g~------~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 256 DFYNVLCSGH------KGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHHTTC------CCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred HHHHHHhcCC------CEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 7777776432 57889999864 7888999999988853
No 80
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.85 E-value=2e-22 Score=202.48 Aligned_cols=186 Identities=13% Similarity=0.116 Sum_probs=125.2
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCee-EEEECCeeCChhhhccceEEEecCCCCCCCCCHHH
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAF-QVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQ 131 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G-~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e 131 (515)
+..+|+++++.+++|++++|+||||||||||++.|+|...+.+| .|.+.+.+.....+++++..+.++.. +++.+
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 34579999999999999999999999999999999999988877 67555444444344444433333321 12233
Q ss_pred HHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHH-HHHHHHHHHHHhCCCEEEEeCCCC---C---
Q psy10236 132 TLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSE-LKRLSIACCLMSHADILLLDCPTV---F--- 204 (515)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGe-rqRv~IA~aL~~~p~lLlLDEPts---g--- 204 (515)
++.... +. ..+.++.++++++..++. .+..+.++|.+| +||+. |+++..+|+++++||||+ +
T Consensus 97 ~l~~~~-~~-------~~~~~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKREI-IE-------NGKFDQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHHH-HH-------HTHHHHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred ccccCC-CC-------HHHHHHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 333221 10 112223344444433331 233446789998 66666 999999999999999999 5
Q ss_pred CCh-hhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCC-ch--------------------HHHhhccEEEEEeCCeE
Q psy10236 205 MDI-FDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPP-TY--------------------EIFTMISRVLLVSGGRT 259 (515)
Q Consensus 205 LD~-~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~-~~--------------------~i~~~~Drv~vL~~G~i 259 (515)
+|. .....+.+.|++++++ | .+||+++|.. .. .+.+.||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~~~------~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKSTG------VVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHHHC------CEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHHhC------CeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 455 6678899999999865 5 7899999985 13 57889999999998875
No 81
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.85 E-value=1e-24 Score=221.34 Aligned_cols=145 Identities=11% Similarity=0.075 Sum_probs=118.0
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEE-----------------------EecCeEEEEEcCCCchHHHHHHHHhCCCCCC
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFE-----------------------VKGSEVLAIMSTSALEGKAILDALAGRNDAK 94 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~-----------------------v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~ 94 (515)
..++++||++.| .++++++++. +++|+++||+||||||||||+++|+|+++|.
T Consensus 42 ~~i~~~~v~~~y----~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 42 EQIDLLEVEEVY----LPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CCCCHHHHHHTH----HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CeEEeeehhhhh----hhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 368999999876 2566666654 8999999999999999999999999999887
Q ss_pred eeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccC
Q psy10236 95 AFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGR 174 (515)
Q Consensus 95 ~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~ 174 (515)
.|. +.+++|+|++.+++. |+.||+.+... +.. ......+.+.++++.++ .+..+..+.+
T Consensus 118 ~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~g~----~~~~d~~~~~~~L~~l~-~~~~~~~~~~ 176 (312)
T 3aez_A 118 DHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR-KGF----PESYNRRALMRFVTSVK-SGSDYACAPV 176 (312)
T ss_dssp TTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC-TTS----GGGBCHHHHHHHHHHHH-TTCSCEEEEE
T ss_pred CCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh-cCC----ChHHHHHHHHHHHHHhC-CCcccCCccc
Confidence 552 468999999999888 99999754221 111 12223456778888888 5556778899
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCh
Q psy10236 175 LTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207 (515)
Q Consensus 175 LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~ 207 (515)
|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 177 lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 177 YSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp EETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred CChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 999999999999999999999999999999986
No 82
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.84 E-value=1.6e-20 Score=193.65 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=75.3
Q ss_pred cCccc-CCChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeC
Q psy10236 169 STRVG-RLTTSELKRLSIACCLM---------SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQ 238 (515)
Q Consensus 169 ~~~v~-~LSGGerqRv~IA~aL~---------~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h 238 (515)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|+++|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---------qt~i~~th 329 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---------QAIVTGTE 329 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---------EEEEEESS
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---------cEEEEEEe
Confidence 34455 69999999999999999 8999999999999999999999999998762 47777777
Q ss_pred CCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 239 PPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 239 ~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
. . + .||++++|++|+++..|+++++
T Consensus 330 ~-~-~---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 330 L-A-P---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp C-C-T---TCSEEEEEETTEEEECCCTTTS
T ss_pred c-c-c---cCCEEEEEECCEEEecCCHHHH
Confidence 3 2 2 8999999999999999998875
No 83
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.84 E-value=2.3e-21 Score=220.29 Aligned_cols=164 Identities=23% Similarity=0.313 Sum_probs=128.3
Q ss_pred HHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCc--h--hhHHHHHHH
Q psy10236 82 AILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSI--K--VTTSEQMGL 157 (515)
Q Consensus 82 TLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~--~--~~~~~~v~~ 157 (515)
|+..+..++++|.+|+|.++|+++.. +..+++.+++.|...+........ . ....++..+
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 446 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLE 446 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHH
T ss_pred cchhcccccCChHhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHH
Confidence 34455667788999999999998632 234678888877554322211100 0 011133456
Q ss_pred HHHHcCCccc-ccCcccCCChHHHHHHHHHHHHHhCCC--EEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEE
Q psy10236 158 LIEELGLTQV-LSTRVGRLTTSELKRLSIACCLMSHAD--ILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVI 234 (515)
Q Consensus 158 ~l~~lgL~~~-~~~~v~~LSGGerqRv~IA~aL~~~p~--lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tii 234 (515)
.+..+||... .++++.+|||||||||.||++|+.+|+ +|||||||+|||+.....+++.|++++++| .|||
T Consensus 447 ~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G------~Tvi 520 (916)
T 3pih_A 447 FLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLG------NTVI 520 (916)
T ss_dssp HHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTT------CEEE
T ss_pred HHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcC------CEEE
Confidence 7888999754 799999999999999999999999887 999999999999999999999999998766 8999
Q ss_pred EEeCCCchHHHhhccEEEEE------eCCeEEEecCccchH
Q psy10236 235 LTLQPPTYEIFTMISRVLLV------SGGRTMYSGKRRDML 269 (515)
Q Consensus 235 is~h~~~~~i~~~~Drv~vL------~~G~iv~~G~~~~~~ 269 (515)
+++|+. + ....||+|++| ++|++++.|+++++.
T Consensus 521 vVtHd~-~-~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 521 VVEHDE-E-VIRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp EECCCH-H-HHHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred EEeCCH-H-HHHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 999984 3 44569999999 899999999998865
No 84
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.84 E-value=4.9e-23 Score=211.87 Aligned_cols=192 Identities=13% Similarity=0.127 Sum_probs=140.5
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC----------h
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP----------L 107 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~----------~ 107 (515)
+.++++++++.|. .+..+|+++ ++|.+||+++|+||||||||||+++|+|..+|+.|.|.+.|++.. .
T Consensus 44 ~~i~~~~l~~~~~-tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFI-LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEEC-CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecC-CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 4689999998873 256799999 999999999999999999999999999999999999999997521 1
Q ss_pred hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccc--cCcccCCChHHHHHHHH
Q psy10236 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVL--STRVGRLTTSELKRLSI 185 (515)
Q Consensus 108 ~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~v~~LSGGerqRv~I 185 (515)
..+++.+.++.|.+. +..+.+..... ...+.+.....+ .+.. -+.+..||+|| |||++
T Consensus 122 ~~~~~~v~~~~~~~~-----~~~~r~~~~~~-------------~~~~ae~~~~~~-~~vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 122 STLSKCVLVVTTSDR-----PALERMKAAFT-------------ATTIAEYFRDQG-KNVLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp HHHTTEEEEEECTTS-----CHHHHHHHHHH-------------HHHHHHHHHTTT-CEEEEEEETHHHHHHHH-HHHHH
T ss_pred hhhhceEEEEECCCC-----CHHHHHHHHHH-------------HHHHHHHHHhcc-ccHHHHHhhHHHHHHHH-HHHHH
Confidence 123445777776432 22222211100 000111111111 0111 14577899999 89999
Q ss_pred HHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHh-CCCCCCCCc-----EEEEEeCCCchHHHhhccEEEEEeCCeE
Q psy10236 186 ACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWAS-GGPAGMAGK-----MVILTLQPPTYEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 186 A~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~~~~~~~-----tiiis~h~~~~~i~~~~Drv~vL~~G~i 259 (515)
| +.+|++ |+|||+....++.++++++.+ ++ |+ ||++++|+.. ..+||+++++.+|++
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~-----GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~I 244 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPK-----GSITAIYTVLLESDNVN---DPIGDEVRSILDGHI 244 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSS-----SEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEE
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCC-----CCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEE
Confidence 9 688877 999999999999999999875 32 36 7888888754 578999999999999
Q ss_pred EEecCccch
Q psy10236 260 MYSGKRRDM 268 (515)
Q Consensus 260 v~~G~~~~~ 268 (515)
+.+++.++.
T Consensus 245 vl~~~l~~~ 253 (347)
T 2obl_A 245 VLTRELAEE 253 (347)
T ss_dssp EBCHHHHTT
T ss_pred EEeCCHHHc
Confidence 999988765
No 85
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.83 E-value=6.5e-21 Score=195.61 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=71.0
Q ss_pred ccCcccCCChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCc
Q psy10236 168 LSTRVGRLTTSELK------RLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPT 241 (515)
Q Consensus 168 ~~~~v~~LSGGerq------Rv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~ 241 (515)
.++++++||||||| |+++|++|+.+|++|||||||+|||+..+..+.+.|+++.++| ++||+++|++
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~------~~vi~~sH~~- 314 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI------PQVILVSHDE- 314 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGS------SEEEEEESCG-
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC------CEEEEEEChH-
Confidence 46778899999999 6677788888999999999999999999999999999987665 7899999984
Q ss_pred hHHHhhccEEEEEe
Q psy10236 242 YEIFTMISRVLLVS 255 (515)
Q Consensus 242 ~~i~~~~Drv~vL~ 255 (515)
++.+.||++++|.
T Consensus 315 -~~~~~~d~~~~l~ 327 (339)
T 3qkt_A 315 -ELKDAADHVIRIS 327 (339)
T ss_dssp -GGGGGCSEEEEEE
T ss_pred -HHHHhCCEEEEEE
Confidence 5789999999995
No 86
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.83 E-value=1.4e-20 Score=203.79 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=70.8
Q ss_pred CcccCC-ChHHHHHHHHHHHHHhCC--CEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHh
Q psy10236 170 TRVGRL-TTSELKRLSIACCLMSHA--DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFT 246 (515)
Q Consensus 170 ~~v~~L-SGGerqRv~IA~aL~~~p--~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~ 246 (515)
+++++| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ | .+||+++|++ ++..
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~------~~vi~itH~~--~~~~ 462 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-T------RQVLVVTHLA--QIAA 462 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-H------SEEEEECCCH--HHHH
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-C------CEEEEEecCH--HHHH
Confidence 345667 999999999999999999 99999999999999999999999999986 5 7999999985 4556
Q ss_pred hccEEEEEeCC
Q psy10236 247 MISRVLLVSGG 257 (515)
Q Consensus 247 ~~Drv~vL~~G 257 (515)
.||++++|++|
T Consensus 463 ~~d~~~~~~~~ 473 (517)
T 4ad8_A 463 RAHHHYKVEKQ 473 (517)
T ss_dssp HSSEEEEEECC
T ss_pred hCCEEEEEecc
Confidence 79999999655
No 87
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.83 E-value=2.3e-22 Score=196.83 Aligned_cols=170 Identities=12% Similarity=0.092 Sum_probs=108.0
Q ss_pred CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHH
Q psy10236 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQ 131 (515)
Q Consensus 52 ~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e 131 (515)
+++.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|+. +++.+|+.+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-------~~~~~i~~v~~d~-~~~~l~~~~ 77 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE-------QRQRKVVILSQDR-FYKVLTAEQ 77 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-------GGGCSEEEEEGGG-GBCCCCHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-------ccCCceEEEeCCc-CccccCHhH
Confidence 5677999999999999999999999999999999999975 333333 3467899999985 778899999
Q ss_pred HHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHH
Q psy10236 132 TLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTF 211 (515)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~ 211 (515)
++.+......... ......+.+.+.++.+ .+..+.++..||+||+||+.+ ++++.+|+++|+|||....|..
T Consensus 78 ~~~~~~~~~~~~~--~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--- 149 (245)
T 2jeo_A 78 KAKALKGQYNFDH--PDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--- 149 (245)
T ss_dssp HHHHHTTCCCTTS--GGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH---
T ss_pred hhhhhccCCCCCC--cccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH---
Confidence 9877543322111 1111123344455543 455677889999999999988 5888899999999988777753
Q ss_pred HHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHH-hhccEEEEEeCCe
Q psy10236 212 FLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIF-TMISRVLLVSGGR 258 (515)
Q Consensus 212 ~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~-~~~Drv~vL~~G~ 258 (515)
+.++ .+ .+|++++|... .+. .+++++ .+|+
T Consensus 150 -----l~~~--~~------~~i~v~th~~~-~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 150 -----IRDM--FH------LRLFVDTDSDV-RLSRRVLRDV---RRGR 180 (245)
T ss_dssp -----HHTT--CS------EEEEEECCHHH-HHHHHHHHHT---C---
T ss_pred -----HHHh--cC------eEEEEECCHHH-HHHHHHHHHH---HcCC
Confidence 2222 12 78888888633 343 334434 5564
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.82 E-value=1.5e-23 Score=227.56 Aligned_cols=182 Identities=10% Similarity=-0.019 Sum_probs=131.7
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEE-EEecCeEEEEEcCCCchHHHHHHH--HhCCCCCCeeEEEECCeeCCh--hhhccc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSF-EVKGSEVLAIMSTSALEGKAILDA--LAGRNDAKAFQVILNGHSIPL--NALKRR 113 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~-~v~~Gei~aIiG~nGaGKSTLl~~--L~G~~~~~~G~I~~~G~~~~~--~~~~~~ 113 (515)
+++.+++.+.. .+..+|++||+ .+++||+++|+||||||||||+++ ++|+.+|++|.|+++|++... ...++.
T Consensus 12 ~~~~~~~~~~~--~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~ 89 (525)
T 1tf7_A 12 NSEHQAIAKMR--TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARS 89 (525)
T ss_dssp --CCSSCCEEC--CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGG
T ss_pred Ccccccccccc--CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHH
Confidence 45556665432 45779999999 999999999999999999999999 789999999999999987422 224567
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
+||++|+....+ ++.+ ...... . ...++++.++|.+..++.+..||||| |
T Consensus 90 ~g~~~q~~~~~~------~l~~---~~~~~~---~-----~~~~~l~~~~l~~~~~~~~~~LS~g~-------------~ 139 (525)
T 1tf7_A 90 FGWDLAKLVDEG------KLFI---LDASPD---P-----EGQEVVGGFDLSALIERINYAIQKYR-------------A 139 (525)
T ss_dssp GTCCHHHHHHTT------SEEE---EECCCC---S-----SCCSCCSSHHHHHHHHHHHHHHHHHT-------------C
T ss_pred cCCChHHhhccC------cEEE---EecCcc---c-----chhhhhcccCHHHHHHHHHHHHHHcC-------------C
Confidence 899988643211 1100 010000 0 01123445556566667777788775 7
Q ss_pred CEEEEeCCCC-----CCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchH--------HHhhccEEEEEeCCe
Q psy10236 194 DILLLDCPTV-----FMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYE--------IFTMISRVLLVSGGR 258 (515)
Q Consensus 194 ~lLlLDEPts-----gLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~--------i~~~~Drv~vL~~G~ 258 (515)
+++++||||+ +||+..+..+.++++.+++.| .|||+++|+.... +..+||+|++|++|+
T Consensus 140 ~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g------~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 140 RRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIG------ATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp SEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHT------CEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred CEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCC------CEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 8999999998 469999999999999998766 8999999986532 345699999999843
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.81 E-value=2.5e-21 Score=223.28 Aligned_cols=174 Identities=9% Similarity=0.066 Sum_probs=121.4
Q ss_pred cCeEEEEe-----eEEeCCCCCcceeeeeEEEEec-------CeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCee
Q psy10236 37 FPHLQVRG-----LEVPPSSKNKCFVQGVSFEVKG-------SEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHS 104 (515)
Q Consensus 37 ~~~L~v~~-----l~~~~~~~~~~iL~~vs~~v~~-------Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~ 104 (515)
.++|+++| |++.+. +++.+++|+++.+++ |++++|+||||||||||||+| |++.+
T Consensus 748 ~~~l~i~~~rHP~l~~~~~-~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFF-GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCCEEEEEECCCC-------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred CceEEEEeccccEEEEEec-CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 35799999 887652 456799999999987 999999999999999999999 98652
Q ss_pred CChhhhccceE-EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHH
Q psy10236 105 IPLNALKRRLV-YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRL 183 (515)
Q Consensus 105 ~~~~~~~~~i~-yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv 183 (515)
..++| ||||+.. .+||.|++. ..+|+.+.......++|+++++ +
T Consensus 815 ------~aqiG~~Vpq~~~---~l~v~d~I~-------------------------~rig~~d~~~~~~stf~~em~~-~ 859 (1022)
T 2o8b_B 815 ------MAQMGCYVPAEVC---RLTPIDRVF-------------------------TRLGASDRIMSGESTFFVELSE-T 859 (1022)
T ss_dssp ------HHTTTCCEESSEE---EECCCSBEE-------------------------EECC---------CHHHHHHHH-H
T ss_pred ------HhheeEEeccCcC---CCCHHHHHH-------------------------HHcCCHHHHhhchhhhHHHHHH-H
Confidence 22355 9999752 445544431 1122222223334567777665 9
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCChhhH-HHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEE-
Q psy10236 184 SIACCLMSHADILLLDCPTVFMDIFDT-FFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTM- 260 (515)
Q Consensus 184 ~IA~aL~~~p~lLlLDEPtsgLD~~~~-~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv- 260 (515)
++|++++.+|+++|||||++|+|+... ..+.++|+.++++ | .++|+++|+. ..+...+|++.++ +|++.
T Consensus 860 a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g------~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~ 931 (1022)
T 2o8b_B 860 ASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIK------CRTLFSTHYH-SLVEDYSQNVAVR-LGHMAC 931 (1022)
T ss_dssp HHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSC------CEEEEECCCH-HHHHHTSSCSSEE-EEEEEE
T ss_pred HHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCC------CEEEEEeCCH-HHHHHhCCcceee-cCeEEE
Confidence 999999999999999999999999884 5578999999875 5 7889999974 4567789999887 58887
Q ss_pred -EecCcc
Q psy10236 261 -YSGKRR 266 (515)
Q Consensus 261 -~~G~~~ 266 (515)
+.|+++
T Consensus 932 ~~~~~~~ 938 (1022)
T 2o8b_B 932 MVENECE 938 (1022)
T ss_dssp C------
T ss_pred EEecCcc
Confidence 455543
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.81 E-value=2.5e-20 Score=202.13 Aligned_cols=156 Identities=7% Similarity=-0.010 Sum_probs=121.5
Q ss_pred EEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcC
Q psy10236 61 SFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLR 140 (515)
Q Consensus 61 s~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~ 140 (515)
++.+++|++++|+|+||||||||++.++|..++. |+ +.+.+++|+.. .++.++. ..+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~--------------~vi~~~~ee~~----~~l~~~~---~~~- 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE--------------RAILFAYEESR----AQLLRNA---YSW- 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC--------------CEEEEESSSCH----HHHHHHH---HTT-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC--------------CEEEEEEeCCH----HHHHHHH---HHc-
Confidence 5599999999999999999999999999987764 32 11344455431 1222221 111
Q ss_pred CCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChh-----hHHHHHH
Q psy10236 141 RPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIF-----DTFFLVE 215 (515)
Q Consensus 141 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~-----~~~~i~~ 215 (515)
.. . +++ +...|+....+..+.+|||||+||+.+|+++..+|+++++| ||+|||.. .+..+.+
T Consensus 332 -g~------~----~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ 398 (525)
T 1tf7_A 332 -GM------D----FEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG 398 (525)
T ss_dssp -SC------C----HHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH
T ss_pred -CC------C----HHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH
Confidence 10 0 111 33567878888999999999999999999999999999999 99999999 9999999
Q ss_pred HHHHHHhCCCCCCCCcEEEEEeCCCc---------hHHHhhccEEEEEeCCe
Q psy10236 216 FLRGWASGGPAGMAGKMVILTLQPPT---------YEIFTMISRVLLVSGGR 258 (515)
Q Consensus 216 ~L~~l~~~g~~~~~~~tiiis~h~~~---------~~i~~~~Drv~vL~~G~ 258 (515)
+++.+++.| .|+|+++|+.. ..+..+||+|++|++|+
T Consensus 399 ll~~l~~~g------~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 399 VTGYAKQEE------ITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHTT------CEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHhCC------CEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999998776 88999988861 45678999999999887
No 91
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.80 E-value=7.1e-20 Score=206.49 Aligned_cols=171 Identities=22% Similarity=0.287 Sum_probs=129.3
Q ss_pred CCCchHHHHHHHHhC---------CCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCC---
Q psy10236 75 TSALEGKAILDALAG---------RNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRP--- 142 (515)
Q Consensus 75 ~nGaGKSTLl~~L~G---------~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~--- 142 (515)
.+..||+++.+.+.. ++++.+|+|.++|+++... ..+++.|.+.+...+...
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~----------------~~~~v~e~~~~~~~~~~~~~~ 333 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITEL----------------SRLPLARVSELLRPYAEEREP 333 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHH----------------HHSBHHHHHHHHHHHHTTCSS
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHH----------------hhcCHHHHHHHHHhhhhhhhh
Confidence 355799999998875 3456778999999876321 012333333333222100
Q ss_pred -------CCCCc-------hhhHHHHHHHHHHHcCCccc-ccCcccCCChHHHHHHHHHHHHHhCC--CEEEEeCCCCCC
Q psy10236 143 -------PKHSI-------KVTTSEQMGLLIEELGLTQV-LSTRVGRLTTSELKRLSIACCLMSHA--DILLLDCPTVFM 205 (515)
Q Consensus 143 -------~~~~~-------~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSGGerqRv~IA~aL~~~p--~lLlLDEPtsgL 205 (515)
..... ..+..++++ .++.+||... .++.+.+|||||||||.||++|+.+| ++|||||||+||
T Consensus 334 ~~~~~~~~~~~~~~i~~~i~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~L 412 (842)
T 2vf7_A 334 GHAERVKNRPEQAIALQRMAADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGL 412 (842)
T ss_dssp CSTTSSSSCSSHHHHHHHHHHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTC
T ss_pred cccchhhcchhhHHHHHHHHHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccC
Confidence 00000 123344555 6889999865 89999999999999999999999999 599999999999
Q ss_pred ChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE------eCCeEEEecCccchHH
Q psy10236 206 DIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV------SGGRTMYSGKRRDMLP 270 (515)
Q Consensus 206 D~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL------~~G~iv~~G~~~~~~~ 270 (515)
|+.....+.++|++|++.| .|||+++|+. ++...||+|++| ++|++++.|+++++..
T Consensus 413 d~~~~~~L~~~l~~L~~~G------~TVIvVeHdl--~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 413 HPADTEALLSALENLKRGG------NSLFVVEHDL--DVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp CGGGHHHHHHHHHHHHTTT------CEEEEECCCH--HHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred CHHHHHHHHHHHHHHHHcC------CEEEEEcCCH--HHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 9999999999999998776 8999999975 366789999999 7999999999988653
No 92
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.80 E-value=3.8e-19 Score=201.14 Aligned_cols=136 Identities=19% Similarity=0.322 Sum_probs=111.5
Q ss_pred CCCCHHHHHHHHhhcCCCCCC--Cc---hhhHHHHHHHHHHHcCCccc-ccCcccCCChHHHHHHHHHHHHHhCC--CEE
Q psy10236 125 PELNVAQTLTFYSHLRRPPKH--SI---KVTTSEQMGLLIEELGLTQV-LSTRVGRLTTSELKRLSIACCLMSHA--DIL 196 (515)
Q Consensus 125 ~~lTv~e~l~~~~~~~~~~~~--~~---~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSGGerqRv~IA~aL~~~p--~lL 196 (515)
..+||.|++.|...+..+... .. ..+..+++ +.++.+||... .++.+++|||||||||.||++|..+| ++|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll 528 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY 528 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 458999999997766432100 00 01233444 45899999864 79999999999999999999999985 999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE------eCCeEEEecCccchH
Q psy10236 197 LLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV------SGGRTMYSGKRRDML 269 (515)
Q Consensus 197 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL------~~G~iv~~G~~~~~~ 269 (515)
||||||+|||+.....+++.|++|++.| .|||+++|+. + ....||+|++| ++|++++.|+++++.
T Consensus 529 ILDEPTagLdp~~~~~L~~~L~~Lr~~G------~TVIvVeHdl-~-~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 529 VLDEPSIGLHQRDNDRLIATLKSMRDLG------NTLIVVEHDE-D-TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHTTT------CEEEEECCCH-H-HHHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHhCC------CEEEEEecCH-H-HHHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 9999999999999999999999998766 8999999985 3 45679999999 799999999998865
No 93
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.78 E-value=2.5e-20 Score=181.27 Aligned_cols=181 Identities=11% Similarity=0.021 Sum_probs=111.2
Q ss_pred eEEEEeeEEeCCCCCcceeeee-EEEEecCeEEEEEcCCCchHHHHHHHHh--CCCCCCeeEEEECCeeCChh--hhccc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGV-SFEVKGSEVLAIMSTSALEGKAILDALA--GRNDAKAFQVILNGHSIPLN--ALKRR 113 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~v-s~~v~~Gei~aIiG~nGaGKSTLl~~L~--G~~~~~~G~I~~~G~~~~~~--~~~~~ 113 (515)
++++++++..+ ..|+++ .+.+++||+++|+||||||||||+++|+ |..++.+|.+.+++...... ...+.
T Consensus 6 ~~~~~~i~tg~-----~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T 2ehv_A 6 YQPVRRVKSGI-----PGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp --CCCEECCSC-----TTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHT
T ss_pred ccccceeecCC-----HhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHH
Confidence 45566665432 234443 2379999999999999999999999999 66566777788877654221 22344
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
+++++|+....+.+++.++....... ..... .......+.++..+...+..-..+|
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~p 136 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVGL-----------PSEEK-------------FVLEDRFNVDNFLRYIYRVVKAINA 136 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC-------------------------------------------CCHHHHHHHHHHHHHHTTC
T ss_pred cCCChHHHhhcCCEEEEEcccccccc-----------ccccc-------------eeccCcccHHHHHHHHHHHHHhhCC
Confidence 66666543333333333322111000 00000 0011112344444444444446899
Q ss_pred CEEEEeCCCCCCC-----hhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHH---------Hhhc-cEEEEEe
Q psy10236 194 DILLLDCPTVFMD-----IFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEI---------FTMI-SRVLLVS 255 (515)
Q Consensus 194 ~lLlLDEPtsgLD-----~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i---------~~~~-Drv~vL~ 255 (515)
+++++||||++|| +..+..+.++++.+++.| .|||+++|... ++ ..+| |+|++|+
T Consensus 137 ~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g------~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 137 KRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMG------VTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp SEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHC------CEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred CEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCC------CeEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 9999999999997 667777999999998776 89999999864 45 5788 9999995
No 94
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.77 E-value=3.4e-19 Score=203.36 Aligned_cols=169 Identities=11% Similarity=0.075 Sum_probs=120.6
Q ss_pred CeEEEEeeEEeCC---CCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHH--------hCCCCCCeeEEEECCeeCC
Q psy10236 38 PHLQVRGLEVPPS---SKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDAL--------AGRNDAKAFQVILNGHSIP 106 (515)
Q Consensus 38 ~~L~v~~l~~~~~---~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L--------~G~~~~~~G~I~~~G~~~~ 106 (515)
..+.+++.....- .+++.+++|+++++.+|++++|+||||||||||||+| .|..-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 3577777654321 1345789999999999999999999999999999999 55444433211
Q ss_pred hhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHH
Q psy10236 107 LNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIA 186 (515)
Q Consensus 107 ~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA 186 (515)
++.+ +. ++..+|+. +.....+|+|+++++.+|
T Consensus 702 -------~~~~---d~-----------------------------------i~~~ig~~---d~l~~~lStf~~e~~~~a 733 (934)
T 3thx_A 702 -------VSIV---DC-----------------------------------ILARVGAG---DSQLKGVSTFMAEMLETA 733 (934)
T ss_dssp -------EECC---SE-----------------------------------EEEECC------------CHHHHHHHHHH
T ss_pred -------chHH---HH-----------------------------------HHHhcCch---hhHHHhHhhhHHHHHHHH
Confidence 1100 00 11112221 122345788888888888
Q ss_pred HHH--HhCCCEEEEeCCCCCCChhhHHHH-HHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 187 CCL--MSHADILLLDCPTVFMDIFDTFFL-VEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 187 ~aL--~~~p~lLlLDEPtsgLD~~~~~~i-~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
+++ +.+|+++||||||+|||+.....+ ..+++.++++. +.++|+++|+. ++..+||++..+.+|++...+
T Consensus 734 ~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~-----g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~ 806 (934)
T 3thx_A 734 SILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKI-----GAFCMFATHFH--ELTALANQIPTVNNLHVTALT 806 (934)
T ss_dssp HHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTT-----CCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEE
T ss_pred HHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC-----CCEEEEEcCcH--HHHHHhcccceeEeeEEEEEe
Confidence 888 899999999999999999998888 67778887641 27899999973 678899999999999999988
Q ss_pred CccchH
Q psy10236 264 KRRDML 269 (515)
Q Consensus 264 ~~~~~~ 269 (515)
+.+++.
T Consensus 807 ~~~~l~ 812 (934)
T 3thx_A 807 TEETLT 812 (934)
T ss_dssp ETTEEE
T ss_pred cCCcEE
Confidence 877654
No 95
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.77 E-value=6.9e-19 Score=199.71 Aligned_cols=138 Identities=22% Similarity=0.296 Sum_probs=110.5
Q ss_pred CCCCCHHHHHHHHhhcCCCCCCC--c---hhhHHHHHHHHHHHcCCccc-ccCcccCCChHHHHHHHHHHHHHhC--CCE
Q psy10236 124 SPELNVAQTLTFYSHLRRPPKHS--I---KVTTSEQMGLLIEELGLTQV-LSTRVGRLTTSELKRLSIACCLMSH--ADI 195 (515)
Q Consensus 124 ~~~lTv~e~l~~~~~~~~~~~~~--~---~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSGGerqRv~IA~aL~~~--p~l 195 (515)
+..+||.|.+.|...+..+.... . ..+..+++ +.++.+||... .++.+.+|||||||||.||++|..+ |++
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~l 544 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVL 544 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCE
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcE
Confidence 44578999998854443221000 0 01223344 35788999865 7999999999999999999999999 599
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEE------eCCeEEEecCccchH
Q psy10236 196 LLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLV------SGGRTMYSGKRRDML 269 (515)
Q Consensus 196 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL------~~G~iv~~G~~~~~~ 269 (515)
|||||||+|||+.....+.+.|++|++.| .|||+++|+. + ....||+|++| ++|++++.|+++++.
T Consensus 545 lILDEPTagLdp~~~~~L~~~L~~Lr~~G------~TVIvVeHdl-~-~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~ 616 (993)
T 2ygr_A 545 YVLDEPSIGLHQRDNRRLIETLTRLRDLG------NTLIVVEHDE-D-TIEHADWIVDIGPGAGEHGGRIVHSGPYDELL 616 (993)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTT------CEEEEECCCH-H-HHHTCSEEEEECSSSGGGCCSCCEEECHHHHH
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHHcC------CEEEEECCCH-H-HHHhCCEEEEecCccccCCCEEEEeeCHHHhh
Confidence 99999999999999999999999998876 8999999985 3 45689999999 799999999998765
Q ss_pred H
Q psy10236 270 P 270 (515)
Q Consensus 270 ~ 270 (515)
.
T Consensus 617 ~ 617 (993)
T 2ygr_A 617 R 617 (993)
T ss_dssp H
T ss_pred h
Confidence 3
No 96
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.77 E-value=2e-20 Score=185.17 Aligned_cols=142 Identities=15% Similarity=0.209 Sum_probs=103.8
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCC-eeEEEECCeeCChhhhccceEEE
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAK-AFQVILNGHSIPLNALKRRLVYV 117 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~-~G~I~~~G~~~~~~~~~~~i~yv 117 (515)
.+++++|++. .+|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... .+..++++
T Consensus 5 ~~~l~~l~~~------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~-~~~~~~~v 75 (261)
T 2eyu_A 5 IPEFKKLGLP------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV-FKHKKSIV 75 (261)
T ss_dssp -CCGGGSSCC------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC-CCCSSSEE
T ss_pred CCChHHCCCH------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee-cCCcceee
Confidence 3556677642 4899999 9999999999999999999999999999997 99999998765210 11111222
Q ss_pred ecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEE
Q psy10236 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197 (515)
Q Consensus 118 ~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLl 197 (515)
.|. .+|+.. .++ |++||++|..+|++++
T Consensus 76 ~q~----------------------------------------~~gl~~------~~l------~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 76 NQR----------------------------------------EVGEDT------KSF------ADALRAALREDPDVIF 103 (261)
T ss_dssp EEE----------------------------------------EBTTTB------SCH------HHHHHHHHHHCCSEEE
T ss_pred eHH----------------------------------------HhCCCH------HHH------HHHHHHHHhhCCCEEE
Confidence 220 123221 122 8999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC
Q psy10236 198 LDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG 256 (515)
Q Consensus 198 LDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~ 256 (515)
+|||| |+.+...++ +. +..| .+|++++|... +...|||+++|..
T Consensus 104 lDEp~---D~~~~~~~l---~~-~~~g------~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 104 VGEMR---DLETVETAL---RA-AETG------HLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp ESCCC---SHHHHHHHH---HH-HHTT------CEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred eCCCC---CHHHHHHHH---HH-HccC------CEEEEEeCcch--HHHHHHHHhhhcC
Confidence 99999 888765443 33 3444 79999999853 6788999888754
No 97
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.76 E-value=1.4e-18 Score=157.27 Aligned_cols=83 Identities=22% Similarity=0.259 Sum_probs=74.3
Q ss_pred ccCcccCCChHHHHHHHHH------HHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCc
Q psy10236 168 LSTRVGRLTTSELKRLSIA------CCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPT 241 (515)
Q Consensus 168 ~~~~v~~LSGGerqRv~IA------~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~ 241 (515)
.++++++||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++| ++||+++|+.
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~------~tiiivsH~~- 123 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI------PQVILVSHDE- 123 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGS------SEEEEEESCG-
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccC------CEEEEEEChH-
Confidence 5778899999999999886 89999999999999999999999999999999987655 7999999985
Q ss_pred hHHHhhccEEEEE--eCCe
Q psy10236 242 YEIFTMISRVLLV--SGGR 258 (515)
Q Consensus 242 ~~i~~~~Drv~vL--~~G~ 258 (515)
++.+.||++++| .+|.
T Consensus 124 -~~~~~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 124 -ELKDAADHVIRISLENGS 141 (148)
T ss_dssp -GGGGGCSEEEEEEEETTE
T ss_pred -HHHHhCCEEEEEEcCCCe
Confidence 577899999999 4554
No 98
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.76 E-value=4.1e-21 Score=193.97 Aligned_cols=164 Identities=9% Similarity=0.051 Sum_probs=86.1
Q ss_pred EeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCC-CCCCeeEEEECCeeCChhhhccceEEEecCC
Q psy10236 43 RGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR-NDAKAFQVILNGHSIPLNALKRRLVYVRSQS 121 (515)
Q Consensus 43 ~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~-~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~ 121 (515)
+||++.| +++.++++++|+| +|+|+||+|||||++.|+|. ..|++| |.++|.++......+.+++++|.+
T Consensus 2 ~~l~~~~--~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 2 SNLPNQV--HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEER 72 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC--
T ss_pred CCCcceE--CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCC
Confidence 4677765 5678999999998 99999999999999999998 788999 888887764322235688999988
Q ss_pred CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCC
Q psy10236 122 FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCP 201 (515)
Q Consensus 122 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEP 201 (515)
.....+|+.|+..++..... . ...+..++.+ .+..++++.++|||||||+.+||+++ ++++|||
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~-~-----e~~~~l~~~l------~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldeP 136 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINC-R-----DCFKTIISYI------DEQFERYLHDESGLNRRHIIDNRVHC----CFYFISP 136 (301)
T ss_dssp -CCEEEEEEEEC-----------------CTTHHHHH------HHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECS
T ss_pred CcccCcchhhhhhhhhhcCc-H-----HHHHHHHHHH------HHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecC
Confidence 88888999998877543210 0 0000111111 23346778899999999999998885 9999999
Q ss_pred CC-CCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCC
Q psy10236 202 TV-FMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPP 240 (515)
Q Consensus 202 ts-gLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~ 240 (515)
|+ |||+... +.++++.+.- +.++|++.|+.
T Consensus 137 t~~~Ld~~~~----~~l~~l~~~~-----~iilV~~K~Dl 167 (301)
T 2qnr_A 137 FGHGLKPLDV----AFMKAIHNKV-----NIVPVIAKADT 167 (301)
T ss_dssp SSSSCCHHHH----HHHHHHTTTS-----CEEEEECCGGG
T ss_pred cccCCCHHHH----HHHHHHHhcC-----CEEEEEEeCCC
Confidence 98 5999873 5666665431 26677777763
No 99
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.76 E-value=3.7e-18 Score=180.55 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=68.5
Q ss_pred CcccCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHH
Q psy10236 170 TRVGRLTTSELKRLSIACCLM----SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIF 245 (515)
Q Consensus 170 ~~v~~LSGGerqRv~IA~aL~----~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~ 245 (515)
+++..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+++ .++|+++|++ +..
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~------~~~ii~th~~--~~~ 400 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPD------LQFIVISLKN--TMF 400 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTT------BEEEEECSCH--HHH
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCC------CEEEEEECCH--HHH
Confidence 345569999999999999999 5899999999999999999999999999986544 7889999973 577
Q ss_pred hhccEEEEEe
Q psy10236 246 TMISRVLLVS 255 (515)
Q Consensus 246 ~~~Drv~vL~ 255 (515)
..||+++++.
T Consensus 401 ~~~d~~~~~~ 410 (430)
T 1w1w_A 401 EKSDALVGVY 410 (430)
T ss_dssp TTCSEEEEEE
T ss_pred HhCCEEEEEE
Confidence 8899999995
No 100
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.74 E-value=4.8e-21 Score=182.41 Aligned_cols=144 Identities=11% Similarity=-0.001 Sum_probs=114.9
Q ss_pred EecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCC--CCCCHHHHHHHHhhcCC
Q psy10236 64 VKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLS--PELNVAQTLTFYSHLRR 141 (515)
Q Consensus 64 v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~--~~lTv~e~l~~~~~~~~ 141 (515)
.++|+++||+||||||||||+++|+|++.| .++|++|++.++ +.+|+.++..+... .
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~--~ 61 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-------------------RVALLPMDHYYKDLGHLPLEERLRVNYD--H 61 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--S
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-------------------CeEEEecCccccCcccccHHHhcCCCCC--C
Confidence 578999999999999999999999998654 589999988776 56899888654321 1
Q ss_pred CCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHH----HHHHHHHHHHhCCCEEEEeCCCCC-------CChhhH
Q psy10236 142 PPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSEL----KRLSIACCLMSHADILLLDCPTVF-------MDIFDT 210 (515)
Q Consensus 142 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGer----qRv~IA~aL~~~p~lLlLDEPtsg-------LD~~~~ 210 (515)
......+++.+.++.+++.+..+.++.++|+||+ ||+++|++++.+|.++++||||++ ||+...
T Consensus 62 -----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~ 136 (211)
T 3asz_A 62 -----PDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADAD 136 (211)
T ss_dssp -----GGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHH
T ss_pred -----hhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHH
Confidence 1122235677788889888777888889999974 788999999999999999999999 999999
Q ss_pred HHHHHHHHHHH-hCCCCCCCCcEEEEEeCC
Q psy10236 211 FFLVEFLRGWA-SGGPAGMAGKMVILTLQP 239 (515)
Q Consensus 211 ~~i~~~L~~l~-~~g~~~~~~~tiiis~h~ 239 (515)
..+.+.+++.. +.| ++++.++|+
T Consensus 137 ~~~~r~l~r~~~~~g------~t~~~~~~~ 160 (211)
T 3asz_A 137 ERFIRRLKRDVLERG------RSLEGVVAQ 160 (211)
T ss_dssp HHHHHHHHHHHHHSC------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC------CCHHHHHHH
Confidence 99999998764 445 677766665
No 101
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.74 E-value=1.8e-19 Score=172.94 Aligned_cols=158 Identities=10% Similarity=0.029 Sum_probs=98.9
Q ss_pred eeeeeE-EEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-------CeeEEEECCeeCChhhhccceEEEecCCCCCCCC
Q psy10236 56 FVQGVS-FEVKGSEVLAIMSTSALEGKAILDALAGRNDA-------KAFQVILNGHSIPLNALKRRLVYVRSQSFLSPEL 127 (515)
Q Consensus 56 iL~~vs-~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-------~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~l 127 (515)
.|+.+- .-+++||+++|+||||||||||+++|+|...+ ..|.+++++++... .+.+++++|...+.+.
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~- 88 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD- 88 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-
Confidence 344332 57999999999999999999999999996544 34467777654211 1123334444333332
Q ss_pred CHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHH-HHHHHHHHHHHh-------CCCEEEEe
Q psy10236 128 NVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSE-LKRLSIACCLMS-------HADILLLD 199 (515)
Q Consensus 128 Tv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGe-rqRv~IA~aL~~-------~p~lLlLD 199 (515)
|+.||+.+. ...++++ ++.+..+++++. +|+++++|
T Consensus 89 ~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilD 132 (231)
T 4a74_A 89 EVLKHIYVA------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVD 132 (231)
T ss_dssp HHHHTEEEE------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEE
T ss_pred HHhhcEEEE------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEEC
Confidence 333333221 1122222 233455555555 99999999
Q ss_pred CCCCCCChhh------------HHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCc---hHHHhhccEEEEEeCCe
Q psy10236 200 CPTVFMDIFD------------TFFLVEFLRGWASGGPAGMAGKMVILTLQPPT---YEIFTMISRVLLVSGGR 258 (515)
Q Consensus 200 EPtsgLD~~~------------~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~---~~i~~~~Drv~vL~~G~ 258 (515)
|||+++|+.. ..++++.|++++++. +.|||+++|... ..+...||++++|++|+
T Consensus 133 e~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~-----g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 133 SLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLY-----DIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp TSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHH-----TCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHC-----CCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 9999999842 237788888876542 389999999432 13778899999998753
No 102
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.74 E-value=1.2e-19 Score=183.33 Aligned_cols=148 Identities=7% Similarity=0.019 Sum_probs=109.5
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----h---hh--ccceEEEecCCCCCCCCCHHHHHHHH
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----N---AL--KRRLVYVRSQSFLSPELNVAQTLTFY 136 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~---~~--~~~i~yv~q~~~~~~~lTv~e~l~~~ 136 (515)
+|++++|+||||||||||++.|+|+++|++|+|.++|.++.. . .+ +..++|++|+....|.+++.+++.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999998732 1 11 35699999999889999999999865
Q ss_pred hhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHH
Q psy10236 137 SHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEF 216 (515)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~ 216 (515)
... ... ..+++..|+.+..+..+ +..++||++|||+++.+|+.++| .||+.+..++++.
T Consensus 181 ~~~-~~d------------~~llDt~G~~~~~~~~~---~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~ 239 (304)
T 1rj9_A 181 KAR-GYD------------LLFVDTAGRLHTKHNLM---EELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQ 239 (304)
T ss_dssp HHH-TCS------------EEEECCCCCCTTCHHHH---HHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHH
T ss_pred HhC-CCC------------EEEecCCCCCCchHHHH---HHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHH
Confidence 321 100 01223344433333333 44458999999999999995555 5666666677777
Q ss_pred HHHHHhC-CCCCCCCcEEEEEeCCC
Q psy10236 217 LRGWASG-GPAGMAGKMVILTLQPP 240 (515)
Q Consensus 217 L~~l~~~-g~~~~~~~tiiis~h~~ 240 (515)
++++.+. + .++|+++|.+
T Consensus 240 ~~~~~~~~~------~t~iivTh~d 258 (304)
T 1rj9_A 240 AKKFHEAVG------LTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHC------CSEEEEECTT
T ss_pred HHHHHHHcC------CcEEEEECCc
Confidence 8877654 4 6888888864
No 103
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.74 E-value=7.9e-19 Score=199.81 Aligned_cols=160 Identities=8% Similarity=0.069 Sum_probs=105.7
Q ss_pred eEEEEeeEEeC-----CCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccc
Q psy10236 39 HLQVRGLEVPP-----SSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRR 113 (515)
Q Consensus 39 ~L~v~~l~~~~-----~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~ 113 (515)
.+.+++..... ..+++.|++|+|+++++|++++|+||||||||||||+|+++.-.. +.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-----------------q~ 702 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-----------------QI 702 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-----------------HH
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-----------------hc
Confidence 57777764321 113567999999999999999999999999999999997642100 00
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA 193 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p 193 (515)
..+++......+ . +++++..+|+.+......+++|+|++|++.|+++ +.+|
T Consensus 703 g~~vpa~~~~i~---------------~-------------~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p 753 (918)
T 3thx_B 703 GSYVPAEEATIG---------------I-------------VDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQ 753 (918)
T ss_dssp TCCBSSSEEEEE---------------C-------------CSEEEEEC----------CCHHHHHHHHHHHHHH-CCTT
T ss_pred Cccccchhhhhh---------------H-------------HHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCC
Confidence 011111100000 0 0001222333334445567799999999999999 8999
Q ss_pred CEEEEeCCCCCCChhhHHHHH-HHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEE
Q psy10236 194 DILLLDCPTVFMDIFDTFFLV-EFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRV 251 (515)
Q Consensus 194 ~lLlLDEPtsgLD~~~~~~i~-~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv 251 (515)
+|+||||||+|||+.....+. .+++.++++. +.++|+++|+. ++.+++|+.
T Consensus 754 ~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~-----g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 754 SLVILDELGRGTSTHDGIAIAYATLEYFIRDV-----KSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp CEEEEESTTTTSCHHHHHHHHHHHHHHHHHTT-----CCEEEEECSCG--GGGGHHHHT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhc-----CCeEEEEeCcH--HHHHHHhhc
Confidence 999999999999999999987 7788886531 27899999974 566777754
No 104
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.72 E-value=6.5e-19 Score=197.65 Aligned_cols=163 Identities=15% Similarity=0.099 Sum_probs=114.5
Q ss_pred cCeEEEEeeEEeCCC-CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-CCeeEEEECCeeCChhhhccce
Q psy10236 37 FPHLQVRGLEVPPSS-KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND-AKAFQVILNGHSIPLNALKRRL 114 (515)
Q Consensus 37 ~~~L~v~~l~~~~~~-~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-~~~G~I~~~G~~~~~~~~~~~i 114 (515)
.+.+++++.....-. +++.+++|+|++ |++++|+||||||||||||+|+|+.. +..|.+. + ..+..+
T Consensus 548 ~~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------p--a~~~~i 616 (765)
T 1ewq_A 548 GDRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------P--AEEAHL 616 (765)
T ss_dssp SSSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------S--SSEEEE
T ss_pred CCcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------e--hhccce
Confidence 346888887432100 346799999999 99999999999999999999999864 5666532 1 123456
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHH--HhC
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCL--MSH 192 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL--~~~ 192 (515)
++++| +++.+++.||+.. .+|+|+++++.+|+++ +.+
T Consensus 617 ~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~~a~~ 655 (765)
T 1ewq_A 617 PLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILKEATE 655 (765)
T ss_dssp CCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHHHCCT
T ss_pred eeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHHhccC
Confidence 77655 4455565554421 3689999999999999 999
Q ss_pred CCEEEEeCC---CCCCChhhH-HHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecC
Q psy10236 193 ADILLLDCP---TVFMDIFDT-FFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264 (515)
Q Consensus 193 p~lLlLDEP---tsgLD~~~~-~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~ 264 (515)
|+++||||| |++||..+. ..+++.|++ .| .++|+++|+. ++..++ .-.+.++++.....
T Consensus 656 p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g------~~vl~~TH~~--~l~~~~--~~~v~n~~~~~~~~ 718 (765)
T 1ewq_A 656 NSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RR------AYTLFATHYF--ELTALG--LPRLKNLHVAAREE 718 (765)
T ss_dssp TEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HT------CEEEEECCCH--HHHTCC--CTTEEEEEEEEECC
T ss_pred CCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CC------CEEEEEeCCH--HHHHhh--hhcceEEEEEEEEc
Confidence 999999999 999998875 578887776 34 7889999973 455555 22234455544443
No 105
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.72 E-value=4.2e-20 Score=203.46 Aligned_cols=195 Identities=9% Similarity=0.091 Sum_probs=118.7
Q ss_pred eEEEEeeEEeCCCCCcceeeee----------EEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-CeeEEEECCeeCC-
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGV----------SFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-KAFQVILNGHSIP- 106 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~v----------s~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-~~G~I~~~G~~~~- 106 (515)
.+.++|++..|..+.+++|+.+ +++++. +||+|||||||||||++|+|+..| ++|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5788899887632223344443 355554 999999999999999999999988 7999999998852
Q ss_pred -----hhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHH
Q psy10236 107 -----LNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELK 181 (515)
Q Consensus 107 -----~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerq 181 (515)
...+++.++|++|+..+++.+||.|++.+......... -++. ++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~-----------------~~~s--------------~~ 135 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG-----------------MGIS--------------HE 135 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS-----------------SCCC--------------SC
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc-----------------cccc--------------hH
Confidence 13467889999999999999999999987643211100 0110 01
Q ss_pred HHHHHHHHHhCCCEEEEeCC------CCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCc------hHHHhh--
Q psy10236 182 RLSIACCLMSHADILLLDCP------TVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPT------YEIFTM-- 247 (515)
Q Consensus 182 Rv~IA~aL~~~p~lLlLDEP------tsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~------~~i~~~-- 247 (515)
++.++.+....|+++++||| |+|||+..+.++.++++++.+++ .+.++++++|... ..+.+.
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~----~~iil~vvt~~~d~a~~~~l~la~~v~ 211 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQ----ETISLVVVPSNVDIATTEALSMAQEVD 211 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSS----SCCEEEEEESSSCTTTCHHHHHHHHHC
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcC----CCCceEEEeccchhccHHHHHHHHHHh
Confidence 11112222348999999999 99999999999999999975543 1256666776543 112222
Q ss_pred ---ccEEEEEeCCeEEEecCccchHHH
Q psy10236 248 ---ISRVLLVSGGRTMYSGKRRDMLPY 271 (515)
Q Consensus 248 ---~Drv~vL~~G~iv~~G~~~~~~~~ 271 (515)
...|+|+.++.++..|+.+++...
T Consensus 212 ~~g~rtI~VlTK~Dlv~~g~~~~~~~~ 238 (608)
T 3szr_A 212 PEGDRTIGILTKPDLVDKGTEDKVVDV 238 (608)
T ss_dssp SSCCSEEEEEECGGGSSSSSTTCCCCC
T ss_pred hcCCceEEEecchhhcCcccHHHHHHH
Confidence 245889999999988877655543
No 106
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.71 E-value=1.2e-19 Score=171.81 Aligned_cols=175 Identities=14% Similarity=0.015 Sum_probs=103.4
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC-----CCCeeEEEECCeeCChhhhccc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN-----DAKAFQVILNGHSIPLNALKRR 113 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~-----~~~~G~I~~~G~~~~~~~~~~~ 113 (515)
+|+++|+++.|. ..++++ +.+.+|+.++|+|+||||||||++.|+|.. .|+.|.+.+.+.-. ....
T Consensus 3 ~l~~~~~~~~~~---~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~----~~~~ 73 (210)
T 1pui_A 3 NLNYQQTHFVMS---APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE----VADG 73 (210)
T ss_dssp --------CEEE---ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE----EETT
T ss_pred chhhhhhhheee---cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE----ecCC
Confidence 589999999873 357888 889999999999999999999999999988 67777765422100 0001
Q ss_pred eEEEecCCCCC----CCCC---HHHHHHHHhhc-CCC--------CCCCchhhHHHHHHHHHHHcCCccc-ccCcccCCC
Q psy10236 114 LVYVRSQSFLS----PELN---VAQTLTFYSHL-RRP--------PKHSIKVTTSEQMGLLIEELGLTQV-LSTRVGRLT 176 (515)
Q Consensus 114 i~yv~q~~~~~----~~lT---v~e~l~~~~~~-~~~--------~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LS 176 (515)
+.++ +.+.+. +.-. .+..+...... +.. .... .......+.++++..++... ..+++..+|
T Consensus 74 ~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 74 KRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP-LKDLDQQMIEWAVDSNIAVLVLLTKADKLA 151 (210)
T ss_dssp EEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC-CCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred EEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC-CchhHHHHHHHHHHcCCCeEEEEecccCCC
Confidence 1111 111110 0000 11122221110 000 0000 01123345567777888654 467788899
Q ss_pred hHHHHH-HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCC
Q psy10236 177 TSELKR-LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGG 224 (515)
Q Consensus 177 GGerqR-v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g 224 (515)
+||+|| +..+++++.+|.++++|||||++|.....++.+.|.++..++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 152 SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 999999 899999999999999999999999999999999999987654
No 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.70 E-value=4.1e-18 Score=163.32 Aligned_cols=170 Identities=10% Similarity=0.013 Sum_probs=114.4
Q ss_pred CcceeeeeEE-EEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhcc---ceEEEecCCCCCCCCC
Q psy10236 53 NKCFVQGVSF-EVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKR---RLVYVRSQSFLSPELN 128 (515)
Q Consensus 53 ~~~iL~~vs~-~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~---~i~yv~q~~~~~~~lT 128 (515)
+...|+++.+ .+++|++++|+||||||||||++.|++...+.+|.|.+.+.+.......+ ..++..|+...
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 82 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIE----- 82 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBT-----
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhh-----
Confidence 3557888886 89999999999999999999999999887776777776654443222111 12222111000
Q ss_pred HHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC--EEEEeCCCCCC-
Q psy10236 129 VAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD--ILLLDCPTVFM- 205 (515)
Q Consensus 129 v~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~--lLlLDEPtsgL- 205 (515)
+++.+ ... ....++ ... .....|.++.++...+.+...+|+ ++++||||+++
T Consensus 83 --~~~~~---~~~----------------~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~ 137 (235)
T 2w0m_A 83 --KKLII---IDA----------------LMKEKE-DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFL 137 (235)
T ss_dssp --TTEEE---EEC----------------CC-----CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSS
T ss_pred --CCEEE---Eec----------------cccccC-cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhc
Confidence 00000 000 000011 111 122359999999888888888999 99999999888
Q ss_pred -ChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCc-------hHHHhhccEEEEEeCC
Q psy10236 206 -DIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPT-------YEIFTMISRVLLVSGG 257 (515)
Q Consensus 206 -D~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~-------~~i~~~~Drv~vL~~G 257 (515)
|+..+.++++.|++++++. +.+||+++|... ..+.++||+|++|+..
T Consensus 138 ~d~~~~~~~~~~l~~~~~~~-----~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 138 DKPAMARKISYYLKRVLNKW-----NFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SCGGGHHHHHHHHHHHHHHT-----TEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhC-----CCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9999999999999997642 389999999862 3478899999999754
No 108
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.69 E-value=6.2e-19 Score=181.62 Aligned_cols=168 Identities=10% Similarity=0.002 Sum_probs=107.1
Q ss_pred ceeeee-EEEEecCeEEEEEcCCCchHHHHHHHHhCCC--CCCe----eE-EEECCeeCChhhhccceEEEecCCCCCCC
Q psy10236 55 CFVQGV-SFEVKGSEVLAIMSTSALEGKAILDALAGRN--DAKA----FQ-VILNGHSIPLNALKRRLVYVRSQSFLSPE 126 (515)
Q Consensus 55 ~iL~~v-s~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~--~~~~----G~-I~~~G~~~~~~~~~~~i~yv~q~~~~~~~ 126 (515)
..|+++ ++.+++|++++|+||||||||||++.|++.. +|++ |. |++++++.. .++++++++|...+++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH
Confidence 346666 6899999999999999999999999999987 6665 67 888887541 13446666666554433
Q ss_pred CCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH-------hCCCEEEEe
Q psy10236 127 LNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM-------SHADILLLD 199 (515)
Q Consensus 127 lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~-------~~p~lLlLD 199 (515)
++.+|+.+... . -|.+++|++.++++++ .+|+++++|
T Consensus 195 -~v~~ni~~~~~----~-------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlD 238 (349)
T 1pzn_A 195 -EVLKHIYVARA----F-------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVD 238 (349)
T ss_dssp -HHGGGEEEEEC----C-------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEE
T ss_pred -HHhhCEEEEec----C-------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEe
Confidence 44444322110 0 1345666666666666 689999999
Q ss_pred CCCCCCChhh------------HHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccc
Q psy10236 200 CPTVFMDIFD------------TFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRD 267 (515)
Q Consensus 200 EPtsgLD~~~------------~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~ 267 (515)
|||+++|+.. ..+++..|++++++. +.+||+++|... .....++.......|+++.++....
T Consensus 239 s~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~-----~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~~~r 312 (349)
T 1pzn_A 239 SLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLY-----DIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSATLR 312 (349)
T ss_dssp TSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHT-----TCEEEEEEECC----------------CCCCCTTCSEE
T ss_pred CchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHc-----CcEEEEEccccc-ccccccCCccccCCcceEeecCcEE
Confidence 9999999852 456677777776642 378999888743 4444455666777788776665433
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.68 E-value=6.6e-20 Score=172.78 Aligned_cols=158 Identities=11% Similarity=0.035 Sum_probs=105.6
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCC
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKH 145 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~ 145 (515)
||+++|+||||||||||+++|+|+++ ++| |.++|..... ...+++++|++|+. .... +++ +.+......
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~~~~~ 70 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGLEPPP 70 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCCCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccccCCc
Confidence 78999999999999999999999999 889 9999977632 24577899999874 1111 111 111110000
Q ss_pred CchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHH-HHHH---HHHhCCCEEEEeC--CCCCCChhhHHHHHHHHHH
Q psy10236 146 SIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRL-SIAC---CLMSHADILLLDC--PTVFMDIFDTFFLVEFLRG 219 (515)
Q Consensus 146 ~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv-~IA~---aL~~~p~lLlLDE--PtsgLD~~~~~~i~~~L~~ 219 (515)
..-.....++..++|+|||+++ ++++ |++.+|+++|+|| |+..+|......+.++++
T Consensus 71 ----------------~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~- 133 (189)
T 2i3b_A 71 ----------------GKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS- 133 (189)
T ss_dssp ----------------SSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH-
T ss_pred ----------------cccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh-
Confidence 0001123444557999999988 4444 5799999999999 898899876555555554
Q ss_pred HHhCCCCCCCCcEEEE---Ee-CCCchHHHhhccEEEEEeCCeEEEec
Q psy10236 220 WASGGPAGMAGKMVIL---TL-QPPTYEIFTMISRVLLVSGGRTMYSG 263 (515)
Q Consensus 220 l~~~g~~~~~~~tiii---s~-h~~~~~i~~~~Drv~vL~~G~iv~~G 263 (515)
.. +++|+ ++ |... ..++|+|..+.+|+++.-.
T Consensus 134 ---~~------~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 134 ---TP------GTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp ---CS------SCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred ---CC------CcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 32 33442 32 5432 3567888888889887643
No 110
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.68 E-value=8.8e-17 Score=160.06 Aligned_cols=150 Identities=11% Similarity=0.069 Sum_probs=107.0
Q ss_pred EEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCC
Q psy10236 63 EVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRP 142 (515)
Q Consensus 63 ~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~ 142 (515)
.+++|++++|+||||||||||++.+++... .|++ +.|.+.. ....+.|+..++.. ..+.+.+. .+...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~---~~~~v~~~~~e~~~---~~~~~r~~---~~g~~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGEL---PTGPVIYLPAEDPP---TAIHHRLH---ALGAH 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCC---CCCCEEEEESSSCH---HHHHHHHH---HHHTT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccC---CCccEEEEECCCCH---HHHHHHHH---HHHhh
Confidence 488999999999999999999999998553 4555 3354331 13457787665421 01111111 11110
Q ss_pred CCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCC--CCChhhH---HHHHHHH
Q psy10236 143 PKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTV--FMDIFDT---FFLVEFL 217 (515)
Q Consensus 143 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPts--gLD~~~~---~~i~~~L 217 (515)
. .....+++++.+++.+..++.+..||+||+|++ ++++.+|+++++||||+ ++|.... .++++.|
T Consensus 94 ~-------~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L 163 (279)
T 1nlf_A 94 L-------SAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRM 163 (279)
T ss_dssp S-------CHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHH
T ss_pred c-------ChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHH
Confidence 0 113356678899998888889999999998865 68889999999999999 9998655 8888888
Q ss_pred HHHHhC-CCCCCCCcEEEEEeCCC
Q psy10236 218 RGWASG-GPAGMAGKMVILTLQPP 240 (515)
Q Consensus 218 ~~l~~~-g~~~~~~~tiiis~h~~ 240 (515)
++++++ | .|||+++|..
T Consensus 164 ~~l~~~~g------~tvi~i~H~~ 181 (279)
T 1nlf_A 164 EAIAADTG------CSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHC------CEEEEEEEC-
T ss_pred HHHHHHcC------CEEEEEecCC
Confidence 888653 5 7899998874
No 111
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.68 E-value=6.1e-18 Score=190.76 Aligned_cols=174 Identities=9% Similarity=0.001 Sum_probs=115.7
Q ss_pred eEEEEeeEEeCC---CCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC-CeeEEEECCeeCChhhhccce
Q psy10236 39 HLQVRGLEVPPS---SKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-KAFQVILNGHSIPLNALKRRL 114 (515)
Q Consensus 39 ~L~v~~l~~~~~---~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-~~G~I~~~G~~~~~~~~~~~i 114 (515)
.+.+++..-..- .+++.+++|+|++ ++|++++|+||||||||||||+|+|+... ..| ..++. .+..+
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa--~~~~i 647 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA--QKVEI 647 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS--SEEEE
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch--hcccc
Confidence 477777542110 0346789999999 99999999999999999999999996421 122 11211 12334
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC
Q psy10236 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD 194 (515)
Q Consensus 115 ~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~ 194 (515)
+++.| +++.+++.|++.. ...++|++++ +++.+...+.+|+
T Consensus 648 ~~~~~---i~~~~~~~d~l~~-----------------------------------~~stf~~e~~-~~~~il~~a~~ps 688 (800)
T 1wb9_A 648 GPIDR---IFTRVGAADDLAS-----------------------------------GRSTFMVEMT-ETANILHNATEYS 688 (800)
T ss_dssp CCCCE---EEEEEC----------------------------------------------CHHHHH-HHHHHHHHCCTTE
T ss_pred eeHHH---HHhhCCHHHHHHh-----------------------------------hhhhhhHHHH-HHHHHHHhccCCC
Confidence 55443 3444555554421 1123566665 4455555689999
Q ss_pred EEEEeCCCCCCChhhHHHH-HHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 195 ILLLDCPTVFMDIFDTFFL-VEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i-~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
++|||||++|+|+.....+ .++++.++++ | .++|+++|+. ++..+||++..+.+|++.+....+++
T Consensus 689 LlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g------~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~~~~l 756 (800)
T 1wb9_A 689 LVLMDEIGRGTSTYDGLSLAWACAENLANKIK------ALTLFATHYF--ELTQLPEKMEGVANVHLDALEHGDTI 756 (800)
T ss_dssp EEEEESCCCCSSSSHHHHHHHHHHHHHHHTTC------CEEEEECSCG--GGGGHHHHSTTEEEEEEEEEEETTEE
T ss_pred EEEEECCCCCCChhHHHHHHHHHHHHHHhccC------CeEEEEeCCH--HHHHHhhhhhceEEEEEEEEEcCCcE
Confidence 9999999999999887775 7888888774 5 7899999985 46678998877888887766544333
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.64 E-value=2e-17 Score=170.54 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=89.2
Q ss_pred EEecCeEEEEEcCCCchHHHHHHHHhCCCCCC-eeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCC
Q psy10236 63 EVKGSEVLAIMSTSALEGKAILDALAGRNDAK-AFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRR 141 (515)
Q Consensus 63 ~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~-~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~ 141 (515)
...+|++++|+|||||||||||++|+|.++|+ +|.|...+.++.. ..+...+++.|.......++.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~~~~------------ 185 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF-VHESKKCLVNQREVHRDTLGF------------ 185 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTBSCH------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh-hhhccccceeeeeeccccCCH------------
Confidence 67899999999999999999999999999887 5676554444321 122333455443221111111
Q ss_pred CCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHH
Q psy10236 142 PPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWA 221 (515)
Q Consensus 142 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~ 221 (515)
.+ +||++|..+|+++++|||| |..+ .+.+.+++
T Consensus 186 ------------------------------------~~----~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~ 218 (356)
T 3jvv_A 186 ------------------------------------SE----ALRSALREDPDIILVGEMR---DLET----IRLALTAA 218 (356)
T ss_dssp ------------------------------------HH----HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHH
T ss_pred ------------------------------------HH----HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHH
Confidence 10 9999999999999999999 6554 44444455
Q ss_pred hCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCC
Q psy10236 222 SGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGG 257 (515)
Q Consensus 222 ~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G 257 (515)
..| .++++++|... ....+||++.|..|
T Consensus 219 ~~G------~~vl~t~H~~~--~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 219 ETG------HLVFGTLHTTS--AAKTIDRVVDVFPA 246 (356)
T ss_dssp HTT------CEEEEEESCSS--HHHHHHHHHHTSCH
T ss_pred hcC------CEEEEEEccCh--HHHHHHHHhhhcCc
Confidence 555 89999999864 34889999998654
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=8.7e-18 Score=176.52 Aligned_cols=151 Identities=13% Similarity=0.102 Sum_probs=91.0
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh--hhhccceE
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRLV 115 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~--~~~~~~i~ 115 (515)
.++.++||++.| +++.+++++||+| +|+|+||||||||+++|+|...+..| .+|..+.. ....+.++
T Consensus 10 ~~l~~~~l~~~y--~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~t~~~~~i~ 78 (418)
T 2qag_C 10 GYVGFANLPNQV--YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKKTVQVEQSK 78 (418)
T ss_dssp -----CCCCCCT--TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC-----CCEEEEEE
T ss_pred CcEEEEecceeE--CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCccceeeeeEE
Confidence 468999999876 5678999999998 99999999999999999999876544 12322211 11235688
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCC-
Q psy10236 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHAD- 194 (515)
Q Consensus 116 yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~- 194 (515)
++.|.+.+++.+||.||+.+...... ......+.+.++ ..++.+++||++|||+++.+|+
T Consensus 79 ~v~q~~~~~~~Ltv~Dt~g~~~~~~~-------~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~d~~~ 139 (418)
T 2qag_C 79 VLIKEGGVQLLLTIVDTPGFGDAVDN-------SNCWQPVIDYID------------SKFEDYLNAESRVNRRQMPDNRV 139 (418)
T ss_dssp CC------CEEEEEEECC------------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCCCC-C
T ss_pred EEEecCCcccceeeeechhhhhhccc-------hhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhccCCCe
Confidence 89998888888999999887543211 000011111121 1355677889999999999999
Q ss_pred --EEEEeCCC-CCCChhhHHHHHHHHHHHHh
Q psy10236 195 --ILLLDCPT-VFMDIFDTFFLVEFLRGWAS 222 (515)
Q Consensus 195 --lLlLDEPt-sgLD~~~~~~i~~~L~~l~~ 222 (515)
+|++|||| .|||+... +.++.+..
T Consensus 140 ~vlL~ldePt~~~L~~~d~----~~lk~L~~ 166 (418)
T 2qag_C 140 QCCLYFIAPSGHGLKPLDI----EFMKRLHE 166 (418)
T ss_dssp CEEEEECCC-CCSCCHHHH----HHHHHHTT
T ss_pred eEEEEEecCcccCCCHHHH----HHHHHHhc
Confidence 99999999 69998873 44555543
No 114
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.60 E-value=1.7e-18 Score=161.77 Aligned_cols=141 Identities=13% Similarity=0.014 Sum_probs=92.7
Q ss_pred EEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChh-hhccceEEEecCCCCCCCCCHHHHHHHHhhcCC
Q psy10236 63 EVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLN-ALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRR 141 (515)
Q Consensus 63 ~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~-~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~ 141 (515)
.+++|++++|+||||||||||+++|+|. +..|.|.++|.++... ..++.++|++|... +.+++.+++.+.+....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~ 80 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYA 80 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHh
Confidence 4679999999999999999999999998 7789999999764211 11233566666433 45688888876543210
Q ss_pred CCCCCchhhHHHHHHHHHHHcCCcccc--cCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHH
Q psy10236 142 PPKHSIKVTTSEQMGLLIEELGLTQVL--STRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRG 219 (515)
Q Consensus 142 ~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~ 219 (515)
.... .. .++.++..+++.... +..+..+|+|++||+.++|++.++|+++ +|+.....+.+.++.
T Consensus 81 ~~~~--~~----~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 81 KEGY--FV----ILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HTSC--EE----EECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred ccCC--eE----EEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 0000 00 000011112222222 4456789999999999999999999876 688777777776665
Q ss_pred HH
Q psy10236 220 WA 221 (515)
Q Consensus 220 l~ 221 (515)
+.
T Consensus 147 l~ 148 (191)
T 1zp6_A 147 LG 148 (191)
T ss_dssp CG
T ss_pred cC
Confidence 43
No 115
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.59 E-value=1.4e-19 Score=169.32 Aligned_cols=173 Identities=8% Similarity=-0.030 Sum_probs=110.9
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCC
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHS 146 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 146 (515)
|++++|+||||||||||+++|++ +.+|.+.++|.++.. ....++++|.....+.+++.+++.+.+........
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQN- 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh---hhccccccCccchhHHHHHHHHHHHHHHHHHhcCC-
Confidence 78999999999999999999997 567899998865421 12345666654444456778887665432110000
Q ss_pred chhhHHHHHHHHHHHcCCcccccCcccCC--ChHHHHHHHHHH------HHHhCCCEEEEeCCCCCCChhhHHHHHHHHH
Q psy10236 147 IKVTTSEQMGLLIEELGLTQVLSTRVGRL--TTSELKRLSIAC------CLMSHADILLLDCPTVFMDIFDTFFLVEFLR 218 (515)
Q Consensus 147 ~~~~~~~~v~~~l~~lgL~~~~~~~v~~L--SGGerqRv~IA~------aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~ 218 (515)
. .+++.+. .....+.+.++ |+|++|++.++. +++.+|+...+|+ +||+..... .+.++
T Consensus 75 ~---------~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~ 140 (189)
T 2bdt_A 75 D---------VVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFE 140 (189)
T ss_dssp E---------EEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHH
T ss_pred c---------EEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHh
Confidence 0 0011000 00000112234 889998988888 9999999888884 899988888 88888
Q ss_pred HHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 219 GWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 219 ~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
.+.+.+ .++|.++|...+++.++||+|+ ++|+++..|+++-+
T Consensus 141 ~~~~~~------~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 141 SKGIDE------RYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HTTCCT------TSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred hcCCCc------cEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 775443 6888888862357889999999 99999999988654
No 116
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.59 E-value=3e-15 Score=138.78 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=68.5
Q ss_pred ccCcccCCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchH
Q psy10236 168 LSTRVGRLTTSELKRLSIACCLMS----HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYE 243 (515)
Q Consensus 168 ~~~~v~~LSGGerqRv~IA~aL~~----~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~ 243 (515)
.++.+..||||||||++||++|+. +|+++||||||+|||+.++..+.+.|+++++. .++|+++|++ .
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-------~~~ivith~~--~ 128 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-------SQFIVITLRD--V 128 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-------SEEEEECSCH--H
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-------CEEEEEEecH--H
Confidence 456678899999999999999974 46999999999999999999999999998653 4677777763 5
Q ss_pred HHhhccEEEEEe--CCe
Q psy10236 244 IFTMISRVLLVS--GGR 258 (515)
Q Consensus 244 i~~~~Drv~vL~--~G~ 258 (515)
+...||+++.+. +|.
T Consensus 129 ~~~~ad~i~~v~~~~g~ 145 (173)
T 3kta_B 129 MMANADKIIGVSMRDGV 145 (173)
T ss_dssp HHTTCSEEEEEEEETTE
T ss_pred HHHhCCEEEEEEecCCE
Confidence 778999998764 553
No 117
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.59 E-value=7.2e-18 Score=164.77 Aligned_cols=144 Identities=13% Similarity=0.073 Sum_probs=105.4
Q ss_pred cCeEEEEEcCCCchHHHHHHHHh---CCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhh----
Q psy10236 66 GSEVLAIMSTSALEGKAILDALA---GRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSH---- 138 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~---G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~---- 138 (515)
++++++|+||||||||||+++|+ |+..+++|+|.++|.+... .....+.+++|+..+++..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~ 104 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENRRG 104 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999 9999999999887754321 223334555677777888899999876432
Q ss_pred ----cCCCCCCCchhhHHHHHHHHHH--HcC------------CcccccCcccCCChHHHHHHHHHHHH-HhCCCEEEEe
Q psy10236 139 ----LRRPPKHSIKVTTSEQMGLLIE--ELG------------LTQVLSTRVGRLTTSELKRLSIACCL-MSHADILLLD 199 (515)
Q Consensus 139 ----~~~~~~~~~~~~~~~~v~~~l~--~lg------------L~~~~~~~v~~LSGGerqRv~IA~aL-~~~p~lLlLD 199 (515)
+...+ ... .+++.+.+ ..+ +....++++.+||| |+ +++ +.+|++++||
T Consensus 105 ~~~il~g~~----~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD 171 (246)
T 2bbw_A 105 QHWLLDGFP----RTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGID 171 (246)
T ss_dssp SCEEEESCC----CSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBC
T ss_pred CeEEEECCC----CCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccc
Confidence 11111 111 12222221 223 33456778889999 66 777 9999999999
Q ss_pred ----CCCCCCChhhHHHHHHHHHHHHhC
Q psy10236 200 ----CPTVFMDIFDTFFLVEFLRGWASG 223 (515)
Q Consensus 200 ----EPtsgLD~~~~~~i~~~L~~l~~~ 223 (515)
|||+|||..+...+.+.|+++.++
T Consensus 172 ~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 172 DVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 118
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.57 E-value=3.9e-19 Score=184.12 Aligned_cols=174 Identities=8% Similarity=0.029 Sum_probs=109.6
Q ss_pred eeeeeEEEEec--CeEEEEEcCCCchHHHHHHHHhCCCCCCe----eEEEEC----CeeC--ChhhhccceEEEecCCCC
Q psy10236 56 FVQGVSFEVKG--SEVLAIMSTSALEGKAILDALAGRNDAKA----FQVILN----GHSI--PLNALKRRLVYVRSQSFL 123 (515)
Q Consensus 56 iL~~vs~~v~~--Gei~aIiG~nGaGKSTLl~~L~G~~~~~~----G~I~~~----G~~~--~~~~~~~~i~yv~q~~~~ 123 (515)
+.+.|+++|.+ |+.++|+||||||||||+++|+|+++|++ |+|.++ |.++ ....+ +.+++++|+...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~ 235 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYID 235 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHH
Confidence 35779999999 99999999999999999999999999998 776653 2221 01111 223333332110
Q ss_pred CCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH-hCCCEEEEeC--
Q psy10236 124 SPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM-SHADILLLDC-- 200 (515)
Q Consensus 124 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~-~~p~lLlLDE-- 200 (515)
+ ..|+.||+.+ +..+..++.+..+|+|++||..+++++. .+|++++|||
T Consensus 236 ~-~~t~~~nl~~---------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~ 287 (365)
T 1lw7_A 236 Y-AVRHSHKIAF---------------------------IDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNN 287 (365)
T ss_dssp H-HHHHCSSEEE---------------------------ESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECC
T ss_pred H-HHhccCCEEE---------------------------EeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 0 0111111100 0011122233346777788888888775 5999999999
Q ss_pred -CC------CCCChhhHHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccch
Q psy10236 201 -PT------VFMDIFDTFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268 (515)
Q Consensus 201 -Pt------sgLD~~~~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~ 268 (515)
|+ .++|...+..+.+.|+++.++ + .++++++|. .+..+++|++.++++ ++..++++++
T Consensus 288 ~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~------~~ililde~--~~~~r~~~~i~~i~~--~l~~~~~~~~ 353 (365)
T 1lw7_A 288 TEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYK------VPYIEIESP--SYLDRYNQVKAVIEK--VLNEEEISEL 353 (365)
T ss_dssp CC-----------CCSHHHHHHHHHHHHHGGG------CCCEEEECS--SHHHHHHHHHHHHHH--HTSCCCCSSC
T ss_pred CCcccCCCcCCccHHHHHHHHHHHHHHHHHcC------CCEEEeCCC--CHHHHHHHHHHHHHH--HhcccchhHh
Confidence 65 589999999999999987653 4 677777664 357778888877754 4445555554
No 119
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.57 E-value=3.9e-15 Score=141.65 Aligned_cols=156 Identities=8% Similarity=-0.073 Sum_probs=99.1
Q ss_pred cceeeeeE-EEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHH
Q psy10236 54 KCFVQGVS-FEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQT 132 (515)
Q Consensus 54 ~~iL~~vs-~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~ 132 (515)
...|+++. +-+++|++++|+||||||||||++.|++ .+..+ +.|+..+.. .+.. .
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~-----------------v~~i~~~~~----~~~~-~ 61 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKK-----------------VAYVDTEGG----FSPE-R 61 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSE-----------------EEEEESSCC----CCHH-H
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCc-----------------EEEEECCCC----CCHH-H
Confidence 34577766 3799999999999999999999999999 22222 233332221 1111 1
Q ss_pred HHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHH--HHHHHHHHHHHhC-CCEEEEeCCCCCCChhh
Q psy10236 133 LTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSE--LKRLSIACCLMSH-ADILLLDCPTVFMDIFD 209 (515)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGe--rqRv~IA~aL~~~-p~lLlLDEPtsgLD~~~ 209 (515)
+.-...... . .. +++++.+ .+.+.|+++ ++++..+++++.+ |+++++||||+++|...
T Consensus 62 ~~~~~~~~~-~------~~----~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~ 122 (220)
T 2cvh_A 62 LVQMAETRG-L------NP----EEALSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEE 122 (220)
T ss_dssp HHHHHHTTT-C------CH----HHHHHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGG
T ss_pred HHHHHHhcC-C------Ch----HHHhhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcC
Confidence 111011000 0 00 1122222 234456664 5678888899886 99999999999999743
Q ss_pred --------HHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCc------------hHHHhhccEEEEEeCC
Q psy10236 210 --------TFFLVEFLRGWASGGPAGMAGKMVILTLQPPT------------YEIFTMISRVLLVSGG 257 (515)
Q Consensus 210 --------~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~------------~~i~~~~Drv~vL~~G 257 (515)
..++++.|++++++. +.++|+++|... ..+...||++++|+..
T Consensus 123 ~~~~~~~~~~~~~~~L~~l~~~~-----~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 123 NRSGLIAELSRQLQVLLWIARKH-----NIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GSSTTHHHHHHHHHHHHHHHHHH-----TCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred chHHHHHHHHHHHHHHHHHHHHc-----CCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 244566678877642 278888888643 1467899999999754
No 120
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.55 E-value=2.3e-18 Score=176.53 Aligned_cols=176 Identities=10% Similarity=0.002 Sum_probs=120.5
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChh-------hhc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLN-------ALK 111 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~-------~~~ 111 (515)
+++++++++.| +.+.+|+++|+++.+|++++|+||||||||||+++|+|.+.|++|+|.+.|.++... ..+
T Consensus 29 ~ie~~~~~~~~--~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 29 LAESRRADHRA--AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HHTCSSHHHHH--HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HHeeCCccccc--ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 57888888765 456789999999999999999999999999999999999999999999999876321 245
Q ss_pred cceEEEecCCCCCCCCC------------HHHHHHHH-----------------------------hhcCCCCCCCchhh
Q psy10236 112 RRLVYVRSQSFLSPELN------------VAQTLTFY-----------------------------SHLRRPPKHSIKVT 150 (515)
Q Consensus 112 ~~i~yv~q~~~~~~~lT------------v~e~l~~~-----------------------------~~~~~~~~~~~~~~ 150 (515)
+++++++|++.+++..+ +.|.+... ..+..+........
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 67899999877765322 22222110 00000000000000
Q ss_pred HHHHHHHHHHHcCCcccccC-cccCCChHHHHHHHHHHHHHh------CCCEEEEeCCCCCCChhhHHHHHHHHHHHH
Q psy10236 151 TSEQMGLLIEELGLTQVLST-RVGRLTTSELKRLSIACCLMS------HADILLLDCPTVFMDIFDTFFLVEFLRGWA 221 (515)
Q Consensus 151 ~~~~v~~~l~~lgL~~~~~~-~v~~LSGGerqRv~IA~aL~~------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~ 221 (515)
.++.+.+....+.+ +..|. ...++|+|++|++..|++++. +|++++ ||++|.....++.+.|.++.
T Consensus 187 i~~~i~~~~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 187 IKKGIFELADMIAV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCTTHHHHCSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhccccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 00011112222222 33342 235689999999999999887 688876 99999999999999998864
No 121
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.55 E-value=9.9e-17 Score=154.51 Aligned_cols=148 Identities=8% Similarity=0.036 Sum_probs=97.0
Q ss_pred eEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC--CeeEEEECCeeCChhhhccceEEEecCCCCCCCCCH----HHHH
Q psy10236 60 VSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA--KAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNV----AQTL 133 (515)
Q Consensus 60 vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~--~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv----~e~l 133 (515)
-.-..++|++++|+||||||||||+++|+|+.+| .+|.|.+.+.+... ..++.++|++|+...++.+++ .|++
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 3446789999999999999999999999999986 78999998876532 235678999987654444433 2222
Q ss_pred HHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHH
Q psy10236 134 TFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFL 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i 213 (515)
.+.... .|-.+++ +..++..++++||| ||+.++.++
T Consensus 88 ~~~~~~------------------------------------yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i 123 (219)
T 1s96_A 88 EVFGNY------------------------------------YGTSREA---IEQVLATGVDVFLD-----IDWQGAQQI 123 (219)
T ss_dssp EETTEE------------------------------------EEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHH
T ss_pred HHHhcc------------------------------------CCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHH
Confidence 111110 0101111 23344457999999 999999999
Q ss_pred HHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCeEEEecCccchHHHH
Q psy10236 214 VEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYF 272 (515)
Q Consensus 214 ~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~iv~~G~~~~~~~~f 272 (515)
.+.+. ++ .+|++++|+. .++.+ |+ +..| .++++++...+
T Consensus 124 ~~~l~----~~------~tI~i~th~~-~~l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 124 RQKMP----HA------RSIFILPPSK-IELDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp HHHCT----TC------EEEEEECSSH-HHHHH---HH--HTTS----CSCHHHHHHHH
T ss_pred HHHcc----CC------EEEEEECCCH-HHHHH---HH--HHcC----CCCHHHHHHHH
Confidence 98876 34 7899999874 33433 43 6667 56666666544
No 122
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.54 E-value=8.9e-17 Score=168.49 Aligned_cols=179 Identities=14% Similarity=0.115 Sum_probs=114.5
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeE--EEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC---hhhhccc
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEV--LAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRR 113 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei--~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~---~~~~~~~ 113 (515)
.|++++ ++.| ++.+ |+++|+++++|++ +||+||||||||||+|+|+|.. ++|.++. ....++.
T Consensus 16 ~l~~~~-~~~y--~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGF--DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp -CCCCC-CC-C--C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred eEEEee-EEEE--CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 456666 5655 4556 9999999999999 9999999999999999999984 2333331 1123457
Q ss_pred eEEEecCCCCCCCCCHHHHHHHHhhcCCCC-CCCchhhHHHHHHHHHHHc-CCcc----cccCccc-----------CCC
Q psy10236 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPP-KHSIKVTTSEQMGLLIEEL-GLTQ----VLSTRVG-----------RLT 176 (515)
Q Consensus 114 i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~v~~~l~~l-gL~~----~~~~~v~-----------~LS 176 (515)
++|++|+..+++.+||.||+.++....... ............++.|... ++.. ..+.+++ .|+
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~ 163 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK 163 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C
T ss_pred EEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC
Confidence 999999998888999999987643211000 0000011234455666665 5532 2333321 355
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHH-HHhCCCCCCCCcEEEEEeC
Q psy10236 177 TSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRG-WASGGPAGMAGKMVILTLQ 238 (515)
Q Consensus 177 GGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~-l~~~g~~~~~~~tiiis~h 238 (515)
-.+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +...| ..|+.++.
T Consensus 164 ~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~g------i~I~~is~ 217 (427)
T 2qag_B 164 SLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNG------VQIYQFPT 217 (427)
T ss_dssp HHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTB------CCCCCCC-
T ss_pred HHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcC------CcEEecCC
Confidence 555 7899999999999999999999999999999999986 76655 55555443
No 123
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.54 E-value=2.8e-16 Score=162.52 Aligned_cols=137 Identities=12% Similarity=0.022 Sum_probs=101.5
Q ss_pred eeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeC-ChhhhccceEEEe-cCCCCCCCCCHHHHHH
Q psy10236 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI-PLNALKRRLVYVR-SQSFLSPELNVAQTLT 134 (515)
Q Consensus 57 L~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~-~~~~~~~~i~yv~-q~~~~~~~lTv~e~l~ 134 (515)
++++|+.+++|++++|+||||||||||+++|+|+++|++|.|.++|..- .....++.++|++ |+...
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~----------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE----------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCcccc-----------
Confidence 3999999999999999999999999999999999999999999998532 2222566788887 54321
Q ss_pred HHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHH
Q psy10236 135 FYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLV 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~ 214 (515)
.++++..+|..|+.++..+|+.+++||+.. .++.
T Consensus 234 ---------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~ 267 (361)
T 2gza_A 234 ---------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAY 267 (361)
T ss_dssp --------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHH
T ss_pred ---------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHH
Confidence 012233466677777778899999999985 3456
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeCCe
Q psy10236 215 EFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258 (515)
Q Consensus 215 ~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~G~ 258 (515)
+.|+.+.... .+++.++|.. .....+||+..+..|.
T Consensus 268 ~~l~~l~~g~------~~~l~t~H~~--~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 268 DFINVAASGH------GGSITSCHAG--SCELTFERLALMVLQN 303 (361)
T ss_dssp HHHHHHHTTC------CSCEEEEECS--SHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCC------CeEEEEECCC--CHHHHHHHHHHHHhcc
Confidence 6777765432 5678888875 3778899999998764
No 124
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.52 E-value=7.5e-17 Score=147.49 Aligned_cols=86 Identities=7% Similarity=-0.133 Sum_probs=70.7
Q ss_pred eeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCC
Q psy10236 44 GLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFL 123 (515)
Q Consensus 44 ~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~ 123 (515)
++++.+ +++.+++++||++++||+++|+||||||||||+|+|+|.+ |++|+|.++|.++......+ .+++|+..+
T Consensus 12 ~~~~~~--g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~--~~~~q~~~l 86 (158)
T 1htw_A 12 FSMLRF--GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIA--GKMIYHFDL 86 (158)
T ss_dssp HHHHHH--HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEET--TEEEEEEEC
T ss_pred HHHHHH--HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCC--Ccceecccc
Confidence 444444 4567899999999999999999999999999999999999 99999999998773211112 278898888
Q ss_pred CCCCCHHHHHHH
Q psy10236 124 SPELNVAQTLTF 135 (515)
Q Consensus 124 ~~~lTv~e~l~~ 135 (515)
+ .+||.|++.+
T Consensus 87 ~-~ltv~e~l~~ 97 (158)
T 1htw_A 87 Y-RLADPEELEF 97 (158)
T ss_dssp T-TCSCTTHHHH
T ss_pred c-cCCcHHHHHH
Confidence 8 8999999865
No 125
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.51 E-value=5.1e-15 Score=152.14 Aligned_cols=121 Identities=12% Similarity=0.007 Sum_probs=89.4
Q ss_pred eeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC-CCeeEEEEC-CeeCChhhhccceEEEecCCCCCCCCCHHHHHH
Q psy10236 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND-AKAFQVILN-GHSIPLNALKRRLVYVRSQSFLSPELNVAQTLT 134 (515)
Q Consensus 57 L~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~-~~~G~I~~~-G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~ 134 (515)
++++++. .+|++++|+||||||||||+|+|+|..+ +.+|+|.++ |+... ...++.+++++|+..+++..+++|+.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~- 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFG- 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------------CCCEEEECTTSCEEEECHHHHTCC-
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhh-
Confidence 5666654 4899999999999999999999999999 999999987 76542 23456789999998888888888841
Q ss_pred HHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHH
Q psy10236 135 FYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCL 189 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL 189 (515)
+.. ....+..+.+.++++.+|+.+..+..+.++| ||+||++||+++
T Consensus 283 ----l~~----l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 ----LWH----LEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp ----CCC----CCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred ----hcC----CCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 111 1223445667788999999999999999999 999999999764
No 126
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.50 E-value=2.1e-15 Score=156.52 Aligned_cols=130 Identities=13% Similarity=0.195 Sum_probs=95.6
Q ss_pred eeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCC-eeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHH
Q psy10236 56 FVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAK-AFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLT 134 (515)
Q Consensus 56 iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~-~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~ 134 (515)
+|++++ +++|++++|+||||||||||+++|+|.++|+ +|+|.+.|.++.. ..+..+++++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~-~~~~~~~~v~Q~~------------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY-VFKHKKSIVNQRE------------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS-CCCCSSSEEEEEE-------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh-hhccCceEEEeee-------------
Confidence 466665 7899999999999999999999999999987 8999887766532 3455677887741
Q ss_pred HHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHH
Q psy10236 135 FYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLV 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~ 214 (515)
+|+. +..+ +.+|+++|..+|+++++|||+ |..+..
T Consensus 191 ---------------------------~g~~------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~--- 225 (372)
T 2ewv_A 191 ---------------------------VGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE--- 225 (372)
T ss_dssp ---------------------------BTTT------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---
T ss_pred ---------------------------cCCC------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---
Confidence 1111 1223 469999999999999999999 665533
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEe
Q psy10236 215 EFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS 255 (515)
Q Consensus 215 ~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~ 255 (515)
..++.. ..| .+++.++|.. ++.+.+||++.|.
T Consensus 226 ~~l~~~-~~g------~~vi~t~H~~--~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 226 TALRAA-ETG------HLVFGTLHTN--TAIDTIHRIVDIF 257 (372)
T ss_dssp HHHHHH-TTT------CEEEECCCCC--SHHHHHHHHHHTS
T ss_pred HHHHHH-hcC------CEEEEEECcc--hHHHHHHHHHHhc
Confidence 344433 334 7888888874 3777888876553
No 127
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.49 E-value=9.7e-16 Score=162.71 Aligned_cols=155 Identities=11% Similarity=0.045 Sum_probs=103.8
Q ss_pred eeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChh-------h--hccceEEEecCCCCCCCC
Q psy10236 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLN-------A--LKRRLVYVRSQSFLSPEL 127 (515)
Q Consensus 57 L~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~-------~--~~~~i~yv~q~~~~~~~l 127 (515)
-+++||++++|++++|+|+||||||||++.|+|++++++|+|.++|.+.... . .+++++|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 4689999999999999999999999999999999999999999988765321 1 356799999998888889
Q ss_pred CHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH-hCC-CEEEEeCCCCCC
Q psy10236 128 NVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM-SHA-DILLLDCPTVFM 205 (515)
Q Consensus 128 Tv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~-~~p-~lLlLDEPtsgL 205 (515)
++.+++.++..-.... .+++..|+.+.......+| +|++.+++++. ..| .+||...||+|.
T Consensus 363 tV~e~l~~a~~~~~Dv-------------VLIDTaGrl~~~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 363 VIFDAIQAAKARNIDV-------------LIADTAGRLQNKSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp HHHHHHHHHHHTTCSE-------------EEECCCCSCCCHHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred HHHHHHHHHHhcCCCE-------------EEEeCCCccchhhhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 9999998864311000 0112222211111111122 47888888764 456 455555588886
Q ss_pred ChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCC
Q psy10236 206 DIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQP 239 (515)
Q Consensus 206 D~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~ 239 (515)
|.. +.++.+.+.- +.+.++.+|-
T Consensus 426 ~al------~~ak~f~~~~-----~itgvIlTKL 448 (503)
T 2yhs_A 426 NAV------SQAKLFHEAV-----GLTGITLTKL 448 (503)
T ss_dssp HHH------HHHHHHHHHT-----CCSEEEEECG
T ss_pred HHH------HHHHHHHhhc-----CCCEEEEEcC
Confidence 544 3344444321 2566777773
No 128
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.48 E-value=5.8e-15 Score=150.45 Aligned_cols=165 Identities=12% Similarity=0.087 Sum_probs=109.7
Q ss_pred EecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh----h---hh--ccceEEEecCCCCCCCCCHHHHHH
Q psy10236 64 VKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----N---AL--KRRLVYVRSQSFLSPELNVAQTLT 134 (515)
Q Consensus 64 v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----~---~~--~~~i~yv~q~~~~~~~lTv~e~l~ 134 (515)
.++|++++|+||||||||||++.|+|+++|++|+|.++|.++.. . .+ +..+.+++|...+.|.++|.||+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 36899999999999999999999999999999999999998732 1 12 234669999999999999999998
Q ss_pred HHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHH
Q psy10236 135 FYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLV 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~ 214 (515)
++....... .+++..|+.+..+..+.+||+ +++++..++.+++||.+|. .+++
T Consensus 206 ~~~~~~~d~-------------vliDtaG~~~~~~~l~~eL~~-------i~ral~~de~llvLDa~t~-------~~~~ 258 (328)
T 3e70_C 206 HAKARGIDV-------------VLIDTAGRSETNRNLMDEMKK-------IARVTKPNLVIFVGDALAG-------NAIV 258 (328)
T ss_dssp HHHHHTCSE-------------EEEEECCSCCTTTCHHHHHHH-------HHHHHCCSEEEEEEEGGGT-------THHH
T ss_pred HHHhccchh-------------hHHhhccchhHHHHHHHHHHH-------HHHHhcCCCCEEEEecHHH-------HHHH
Confidence 764311100 012233444333444444543 8888887777777774443 4666
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEeCCCch--------HHHhhccEEEEEeCCeEE
Q psy10236 215 EFLRGWASGGPAGMAGKMVILTLQPPTY--------EIFTMISRVLLVSGGRTM 260 (515)
Q Consensus 215 ~~L~~l~~~g~~~~~~~tiiis~h~~~~--------~i~~~~Drv~vL~~G~iv 260 (515)
+.++.+.+.- +.++|+.+|.+.. .+....-.|..+..|+-+
T Consensus 259 ~~~~~~~~~~-----~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 259 EQARQFNEAV-----KIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHHHHHS-----CCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHHHHhc-----CCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 6677776432 2677777775421 122333456666666543
No 129
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.48 E-value=6.5e-18 Score=171.82 Aligned_cols=161 Identities=9% Similarity=-0.002 Sum_probs=102.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhCCC--------CCCeeEEEECCeeCChh------------------hhccceEEE---e
Q psy10236 68 EVLAIMSTSALEGKAILDALAGRN--------DAKAFQVILNGHSIPLN------------------ALKRRLVYV---R 118 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~~--------~~~~G~I~~~G~~~~~~------------------~~~~~i~yv---~ 118 (515)
++++|+|+||||||||+|.|.|.. .++.|+|.++|.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999987 78999999999876321 223445555 4
Q ss_pred cCCCCCCCCCHHHHHHHHh--hc-CCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCE
Q psy10236 119 SQSFLSPELNVAQTLTFYS--HL-RRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADI 195 (515)
Q Consensus 119 q~~~~~~~lTv~e~l~~~~--~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~l 195 (515)
|+..++++.++.||..++. .+ +.... ........+++.++..+++.+..++.. ++|+||+||+..+++++.+|++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~-~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl 162 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFS-HEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDV 162 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHH-SHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTT
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhc-CccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECccc
Confidence 6555555666666654320 00 00000 000000001112233345544444433 6999999999888888888887
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhcc
Q psy10236 196 LLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMIS 249 (515)
Q Consensus 196 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~D 249 (515)
+ ||| ..+.+.|++++ .+ .+|++++|.+. ++..++|
T Consensus 163 ~--de~---------~~l~~~l~~l~-~~------~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 163 A--GEA---------EKLHERLARIN-AR------APVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp C--SCT---------HHHHHHHHHHC-SS------SCEEECCSSCC-CGGGGSC
T ss_pred C--CHH---------HHHHHHHHHhC-CC------CeEEEecccCC-CHHHHhC
Confidence 7 888 77888888874 33 78899999764 3444443
No 130
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.46 E-value=8.1e-14 Score=134.52 Aligned_cols=152 Identities=14% Similarity=0.136 Sum_probs=88.3
Q ss_pred eeeeE-EEEecCeEEEEEcCCCchHHHHHHHHhC--CCCC-----CeeEEEECCeeC-Chhh---hccceEEEecCCCCC
Q psy10236 57 VQGVS-FEVKGSEVLAIMSTSALEGKAILDALAG--RNDA-----KAFQVILNGHSI-PLNA---LKRRLVYVRSQSFLS 124 (515)
Q Consensus 57 L~~vs-~~v~~Gei~aIiG~nGaGKSTLl~~L~G--~~~~-----~~G~I~~~G~~~-~~~~---~~~~i~yv~q~~~~~ 124 (515)
|+.+= .-+++|++++|+||||||||||++.|++ ..++ ..|.+++++++. .... ..+.+++.+|+
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~---- 88 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD---- 88 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH----
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH----
Confidence 44432 5689999999999999999999999999 5554 567777777642 1111 11122221110
Q ss_pred CCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHH-HHHHHHHH--hCCCEEEEeCC
Q psy10236 125 PELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKR-LSIACCLM--SHADILLLDCP 201 (515)
Q Consensus 125 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqR-v~IA~aL~--~~p~lLlLDEP 201 (515)
+++.+. .....+..+... +.-+.+++ .+|+++++|||
T Consensus 89 ---------------------------------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 89 ---------------------------------VLDNVA-------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp ---------------------------------HHHTEE-------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred ---------------------------------HhhCeE-------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 111110 011233333222 22233333 58999999999
Q ss_pred CCCCChh-------h-----HHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchH------------------HHhhccEE
Q psy10236 202 TVFMDIF-------D-----TFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYE------------------IFTMISRV 251 (515)
Q Consensus 202 tsgLD~~-------~-----~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~------------------i~~~~Drv 251 (515)
++.+|+. . ..+++..|++++++. +.+||+++|..... +...||.+
T Consensus 129 ~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~-----~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~v 203 (243)
T 1n0w_A 129 TALYRTDYSGRGELSARQMHLARFLRMLLRLADEF-----GVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTR 203 (243)
T ss_dssp SGGGC-------CHHHHHHHHHHHHHHHHHHHHHH-----CCEEEEEC-------------------------CCTTCEE
T ss_pred hHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHc-----CCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEE
Confidence 9999975 3 345666677766541 37888888853211 22389999
Q ss_pred EEEeCC
Q psy10236 252 LLVSGG 257 (515)
Q Consensus 252 ~vL~~G 257 (515)
++|+.|
T Consensus 204 i~l~~~ 209 (243)
T 1n0w_A 204 LYLRKG 209 (243)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999865
No 131
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.46 E-value=5.7e-16 Score=143.46 Aligned_cols=135 Identities=12% Similarity=0.060 Sum_probs=87.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhCCCCCC---eeEEEECCeeCC------hhhhc-cceE----EEecCCCCCCCCCHHHHH
Q psy10236 68 EVLAIMSTSALEGKAILDALAGRNDAK---AFQVILNGHSIP------LNALK-RRLV----YVRSQSFLSPELNVAQTL 133 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~~~~~---~G~I~~~G~~~~------~~~~~-~~i~----yv~q~~~~~~~lTv~e~l 133 (515)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.++. ...++ +.++ +++|+..++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--------- 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--------- 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---------
Confidence 589999999999999999999999988 899999998742 22344 3566 777765543
Q ss_pred HHHhhcCCCCCCCchhhHHHHHHHHHHH-cCCcccccCccc-CCChHHHHHHHHHHHHHhCCCEE-------EEeCCCCC
Q psy10236 134 TFYSHLRRPPKHSIKVTTSEQMGLLIEE-LGLTQVLSTRVG-RLTTSELKRLSIACCLMSHADIL-------LLDCPTVF 204 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~v~-~LSGGerqRv~IA~aL~~~p~lL-------lLDEPtsg 204 (515)
+... ..+....++++++. +. ..|+.++ .|||||+||++|||+++.+|++. .-|.|..+
T Consensus 74 -----i~~~-----~~~~~a~l~~~i~~~l~---g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~ 140 (171)
T 2f1r_A 74 -----IRRV-----SEEEGNDLDWIYERYLS---DYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDG 140 (171)
T ss_dssp -----EEEC-----CHHHHTCHHHHHHHHTT---TCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSS
T ss_pred -----EecC-----ChhhhhCHHHHHHhhCC---CCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCccc
Confidence 0000 00111134455555 42 2455544 39999999999999999999873 23555322
Q ss_pred ---CChhhHHHHHHHHHHHHhCC
Q psy10236 205 ---MDIFDTFFLVEFLRGWASGG 224 (515)
Q Consensus 205 ---LD~~~~~~i~~~L~~l~~~g 224 (515)
+|......+.+.+.+...+|
T Consensus 141 ~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 141 HKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp SCEECTTCHHHHHHHHHHHHTC-
T ss_pred CcccCcccHHHHHHHHHHHHhcc
Confidence 44566788888887776665
No 132
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.44 E-value=7.5e-17 Score=169.49 Aligned_cols=139 Identities=9% Similarity=-0.002 Sum_probs=96.1
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-------hhhccceEEEe-------
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-------NALKRRLVYVR------- 118 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~------- 118 (515)
...+|+++ + .++|++++|+|||||||||||++|+|.++|++|+|.+.|.++.. ...++.+++.+
T Consensus 155 ~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~ 232 (418)
T 1p9r_A 155 NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAI 232 (418)
T ss_dssp HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHH
T ss_pred HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHH
Confidence 34467777 4 38999999999999999999999999999999999999887631 11233455543
Q ss_pred --cCCCC--CCC----CCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH
Q psy10236 119 --SQSFL--SPE----LNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM 190 (515)
Q Consensus 119 --q~~~~--~~~----lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~ 190 (515)
|++.. ++. .|+.+++.++..-+............+ +...|..+|+.+.. .+.+|||||+|| ||++|+
T Consensus 233 Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL~ 307 (418)
T 1p9r_A 233 LRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--ISSSLLGVLAQR--LVRTLC 307 (418)
T ss_dssp GGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HHHHEEEEEEEE--EEEEEC
T ss_pred hccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HHHHHHHHHHHH--hhhhhc
Confidence 77654 343 588888876532110000000011122 22356778997653 678899999999 999999
Q ss_pred hCCCEEEE
Q psy10236 191 SHADILLL 198 (515)
Q Consensus 191 ~~p~lLlL 198 (515)
.+|++..-
T Consensus 308 ~~p~~~~~ 315 (418)
T 1p9r_A 308 PDCKEPYE 315 (418)
T ss_dssp TTTCEEEE
T ss_pred CCCCccCC
Confidence 99998763
No 133
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.43 E-value=8.5e-15 Score=147.72 Aligned_cols=120 Identities=8% Similarity=0.012 Sum_probs=87.0
Q ss_pred EecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEE---CCeeCChh--hhc-cceEEEecCCCCC-----CCCCHHHH
Q psy10236 64 VKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVIL---NGHSIPLN--ALK-RRLVYVRSQSFLS-----PELNVAQT 132 (515)
Q Consensus 64 v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~---~G~~~~~~--~~~-~~i~yv~q~~~~~-----~~lTv~e~ 132 (515)
+.+|++++|+||||||||||+|+|+ ..+|++|+|.+ +|++.+.. ..+ +.+||++|.+.+. +.+|+ |+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~ 239 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-RE 239 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HH
Confidence 3479999999999999999999999 99999999999 99877532 122 3689999988654 78999 88
Q ss_pred H--HHH------hhcCCCCCCCchhhHHHHHHHHHHHcCCcc-cccCcccCCChHHHHHHHHHHH
Q psy10236 133 L--TFY------SHLRRPPKHSIKVTTSEQMGLLIEELGLTQ-VLSTRVGRLTTSELKRLSIACC 188 (515)
Q Consensus 133 l--~~~------~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSGGerqRv~IA~a 188 (515)
+ .|. ++++.... ..+...+++++++.++|.+ ..++++..|||.++|++.|||+
T Consensus 240 l~~~f~~~~~~~c~~~~~~~---~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 240 VRNYFREFLRYQCKYPDCTH---TNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGCGGGHHHHHHSTTCCS---SSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHccCCCCCCCC---CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7 443 11221111 1223356888999999986 7899999999999999999873
No 134
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.42 E-value=1.5e-14 Score=151.72 Aligned_cols=167 Identities=11% Similarity=0.046 Sum_probs=100.8
Q ss_pred eeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHH-
Q psy10236 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTF- 135 (515)
Q Consensus 57 L~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~- 135 (515)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.+ .....++++.+++. ..+++.|+..+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpGli 216 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPGII 216 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccc--eecceeeEEEecCc--ceEEEEeccccc
Confidence 479999999999999999999999999999999843 23333322 12223445544320 01111111100
Q ss_pred --HhhcCCCCCCCchhh--HHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHH
Q psy10236 136 --YSHLRRPPKHSIKVT--TSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTF 211 (515)
Q Consensus 136 --~~~~~~~~~~~~~~~--~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~ 211 (515)
...... ..... ..++++.++..+++. +.++.+||+|++|++.+|++|+.+|.++++ +++|...+
T Consensus 217 ~~a~~~~~----L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~- 284 (416)
T 1udx_A 217 EGASEGKG----LGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE- 284 (416)
T ss_dssp CCGGGSCC----SCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-
T ss_pred cchhhhhh----hhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-
Confidence 000000 00000 001122234444544 567788999999999999999999999999 99999887
Q ss_pred HHHHHHHHHH-hCCCCCCCCcEEEEEeCCCchHHHhhccEE
Q psy10236 212 FLVEFLRGWA-SGGPAGMAGKMVILTLQPPTYEIFTMISRV 251 (515)
Q Consensus 212 ~i~~~L~~l~-~~g~~~~~~~tiiis~h~~~~~i~~~~Drv 251 (515)
..++.+++.. +.+ .+++.++......+.++++.+
T Consensus 285 ~~~~~l~~~l~~~g------~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 285 EAVKALADALAREG------LAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHHTTT------SCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcC------CeEEEEECCCccCHHHHHHHH
Confidence 4555555443 334 455555544444566666554
No 135
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.42 E-value=5.5e-15 Score=136.99 Aligned_cols=114 Identities=11% Similarity=0.018 Sum_probs=76.9
Q ss_pred EEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcC
Q psy10236 61 SFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLR 140 (515)
Q Consensus 61 s~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~ 140 (515)
++.+.+|+.++|.||||+|||||+++|++...+.+|. .+.| +++.+.+....
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~---------------~~~~----------~~~~~~~~~~~--- 83 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI---------------RGYF----------FDTKDLIFRLK--- 83 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC---------------CCCE----------EEHHHHHHHHH---
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC---------------eEEE----------EEHHHHHHHHH---
Confidence 4556789999999999999999999999987654441 0111 12333221110
Q ss_pred CCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCC-CCChhhHHHHHHHHHH
Q psy10236 141 RPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTV-FMDIFDTFFLVEFLRG 219 (515)
Q Consensus 141 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPts-gLD~~~~~~i~~~L~~ 219 (515)
.....-. . + -....+.+|++|+||||++ ++|+..+..+.+++..
T Consensus 84 ----------------~~~~~~~-----------~-----~---~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~ 128 (180)
T 3ec2_A 84 ----------------HLMDEGK-----------D-----T---KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITY 128 (180)
T ss_dssp ----------------HHHHHTC-----------C-----S---HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHH
T ss_pred ----------------HHhcCch-----------H-----H---HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 0000000 0 0 1122244999999999995 9999999999999998
Q ss_pred HHhCCCCCCCCcEEEEEeCCCchH
Q psy10236 220 WASGGPAGMAGKMVILTLQPPTYE 243 (515)
Q Consensus 220 l~~~g~~~~~~~tiiis~h~~~~~ 243 (515)
..+++ +++|+++|.+..+
T Consensus 129 ~~~~~------~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 129 RYNNL------KSTIITTNYSLQR 146 (180)
T ss_dssp HHHTT------CEEEEECCCCSCC
T ss_pred HHHcC------CCEEEEcCCChhH
Confidence 87665 7889999887654
No 136
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.40 E-value=5.7e-14 Score=126.98 Aligned_cols=97 Identities=12% Similarity=0.129 Sum_probs=71.1
Q ss_pred eeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHH
Q psy10236 56 FVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTF 135 (515)
Q Consensus 56 iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~ 135 (515)
+|+++ +|+.++|+||||+|||||+++|+|...+ +| ..+.|+...+....
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g---------------~~~~~~~~~~~~~~---------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG---------------KNAAYIDAASMPLT---------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT---------------CCEEEEETTTSCCC----------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC---------------CcEEEEcHHHhhHH----------
Confidence 56666 8999999999999999999999998765 34 01233322211000
Q ss_pred HhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHH
Q psy10236 136 YSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVE 215 (515)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~ 215 (515)
+++.+|++|++|||++ +|...+..+.+
T Consensus 79 ----------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~ 105 (149)
T 2kjq_A 79 ----------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFS 105 (149)
T ss_dssp ----------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHH
T ss_pred ----------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHH
Confidence 2256799999999998 66666899999
Q ss_pred HHHHHHhCCCCCCCCcE-EEEEeCCCch
Q psy10236 216 FLRGWASGGPAGMAGKM-VILTLQPPTY 242 (515)
Q Consensus 216 ~L~~l~~~g~~~~~~~t-iiis~h~~~~ 242 (515)
+++++.++| ++ +|+++|.+..
T Consensus 106 li~~~~~~g------~~~iiits~~~p~ 127 (149)
T 2kjq_A 106 IFNRFRNSG------KGFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHT------CCEEEEEESSCTT
T ss_pred HHHHHHHcC------CcEEEEECCCCHH
Confidence 999988766 66 8888886544
No 137
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.40 E-value=7.9e-13 Score=137.00 Aligned_cols=77 Identities=23% Similarity=0.308 Sum_probs=66.9
Q ss_pred CcccCCChHHHHHH------HHHHHHHhC-CCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCch
Q psy10236 170 TRVGRLTTSELKRL------SIACCLMSH-ADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTY 242 (515)
Q Consensus 170 ~~v~~LSGGerqRv------~IA~aL~~~-p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~ 242 (515)
.++..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++.+ + .+||+++|++
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~------~~vi~~th~~-- 346 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-I------PQMIIITHHR-- 346 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-C------SEEEEEESCG--
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-C------CeEEEEEChH--
Confidence 45678999999988 567888999 999999999999999999999999998743 2 5788999985
Q ss_pred HHHhhccEEEEEe
Q psy10236 243 EIFTMISRVLLVS 255 (515)
Q Consensus 243 ~i~~~~Drv~vL~ 255 (515)
++...||++++|+
T Consensus 347 ~~~~~~d~~~~l~ 359 (371)
T 3auy_A 347 ELEDVADVIINVK 359 (371)
T ss_dssp GGGGGCSEEEEEE
T ss_pred HHHhhCCEEEEEE
Confidence 4678999999996
No 138
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.36 E-value=1.1e-15 Score=156.32 Aligned_cols=164 Identities=14% Similarity=0.146 Sum_probs=111.7
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecC-------eEEEEEcCCCchHHHHHHHHhCCC----CCCeeEEEECCeeCCh
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGS-------EVLAIMSTSALEGKAILDALAGRN----DAKAFQVILNGHSIPL 107 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~G-------ei~aIiG~nGaGKSTLl~~L~G~~----~~~~G~I~~~G~~~~~ 107 (515)
+++.++++..+ ++..+++++++.+++| +.++|.||||+|||||+++|+|.. .+++|.+..++.++..
T Consensus 18 ~lr~~~l~~~~--g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 18 FLRPKSLDEFI--GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TTSCSSGGGCC--SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred HcCCccHHHcc--CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 45566666544 5667899999999887 899999999999999999999987 5667777666554421
Q ss_pred --hh-hccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHH
Q psy10236 108 --NA-LKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLS 184 (515)
Q Consensus 108 --~~-~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~ 184 (515)
.. .+..+.++.|.+.+.+ ++.|++...................+.+...+..++|.. +.++++.||+|+|||+.
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFG 172 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTCS
T ss_pred HHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcC
Confidence 11 2456999998777665 788888544332211000000112234455566677765 77888999999999986
Q ss_pred HHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhC
Q psy10236 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASG 223 (515)
Q Consensus 185 IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~ 223 (515)
++ .+||+.+..++.++|++.++.
T Consensus 173 l~----------------~~Ld~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 173 II----------------LELDFYTVKELKEIIKRAASL 195 (334)
T ss_dssp EE----------------EECCCCCHHHHHHHHHHHHHH
T ss_pred ce----------------eeCCCCCHHHHHHHHHHHHHH
Confidence 55 889999999999999998753
No 139
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.33 E-value=6.7e-14 Score=140.29 Aligned_cols=125 Identities=13% Similarity=0.032 Sum_probs=87.3
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhh----c-
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSH----L- 139 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~----~- 139 (515)
.++.+++|.|++|||||||.+.|++.+.+. | . -++.+.+|+|++.+++. ++++|+.+... +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~ 94 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQ 94 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C------CCceEEEeccccccCCh-HHHHHHhccccccchhh
Confidence 467899999999999999999999987653 1 0 13445666999888765 88888877521 1
Q ss_pred -CCCCCCCchhhHHHHHHHHHHHcCCc------c--cccCcccCCChHHHHHHHHH--HHHHhCCCEEEEeCCCCCCChh
Q psy10236 140 -RRPPKHSIKVTTSEQMGLLIEELGLT------Q--VLSTRVGRLTTSELKRLSIA--CCLMSHADILLLDCPTVFMDIF 208 (515)
Q Consensus 140 -~~~~~~~~~~~~~~~v~~~l~~lgL~------~--~~~~~v~~LSGGerqRv~IA--~aL~~~p~lLlLDEPtsgLD~~ 208 (515)
+..+ .........+.++.+.-. . .....-.++||||+||+.+| +++ +|+|+|+|||++++|+.
T Consensus 95 ~~g~p----~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 95 GRGLP----GTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SSCST----TSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred hccCc----chhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 1111 111234455666666432 1 12333457999999999997 555 99999999999999986
Q ss_pred h
Q psy10236 209 D 209 (515)
Q Consensus 209 ~ 209 (515)
.
T Consensus 169 ~ 169 (290)
T 1odf_A 169 L 169 (290)
T ss_dssp C
T ss_pred c
Confidence 4
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=1.2e-12 Score=133.90 Aligned_cols=144 Identities=11% Similarity=0.046 Sum_probs=77.1
Q ss_pred EEEEcCCCchHHHHHHHHhC-CCCCCeeEEEECCeeCCh-hhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCc
Q psy10236 70 LAIMSTSALEGKAILDALAG-RNDAKAFQVILNGHSIPL-NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSI 147 (515)
Q Consensus 70 ~aIiG~nGaGKSTLl~~L~G-~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~ 147 (515)
+.|.||||+|||||+++|+| +..+..|.+.++|.+... ...+..+++++|.+.+.-..+ + ... ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~---~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MGN---ND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC-----------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHh--h--------cCC---cc
Confidence 89999999999999999999 788999999999977632 122456778877653211100 0 000 00
Q ss_pred hhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCC
Q psy10236 148 KVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAG 227 (515)
Q Consensus 148 ~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~ 227 (515)
. ..+.+.++.+......+... +||| +..+|+++++|||++ ||..++..+.+.|.+...
T Consensus 106 ~----~~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~----- 163 (354)
T 1sxj_E 106 R----IVIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSK----- 163 (354)
T ss_dssp H----HHHHHHHHHHTTTTC------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT-----
T ss_pred h----HHHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC-----
Confidence 0 12233333332211111111 5666 788999999999999 999999999999987532
Q ss_pred CCCcEEEEEeCCCchHHHhhccE
Q psy10236 228 MAGKMVILTLQPPTYEIFTMISR 250 (515)
Q Consensus 228 ~~~~tiiis~h~~~~~i~~~~Dr 250 (515)
+.++|+++|++......+.+|
T Consensus 164 --~~~~Il~t~~~~~l~~~l~sR 184 (354)
T 1sxj_E 164 --NIRLIMVCDSMSPIIAPIKSQ 184 (354)
T ss_dssp --TEEEEEEESCSCSSCHHHHTT
T ss_pred --CCEEEEEeCCHHHHHHHHHhh
Confidence 268888888865322333344
No 141
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.31 E-value=5.3e-15 Score=159.28 Aligned_cols=174 Identities=11% Similarity=0.081 Sum_probs=105.7
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCee-CChhhhccceEEEecCCC----------
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHS-IPLNALKRRLVYVRSQSF---------- 122 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~-~~~~~~~~~i~yv~q~~~---------- 122 (515)
..+++++++.+++|+.++|+|||||||||||++|+|+++|++|.|.++|.+ +... -...+.++.|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~-~~~~v~~~~r~~~~~~~~~~~~~ 325 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY-HENWIAEVTRTGMGEGEIDMYDL 325 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC-CSSEEEEECBCCSSSCCBCHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC-CCCeEEEEeecccccCCcCHHHH
Confidence 457899999999999999999999999999999999999999999999865 2211 1233445444322
Q ss_pred ------------CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCC-----cc----ccc---CcccCCChH
Q psy10236 123 ------------LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGL-----TQ----VLS---TRVGRLTTS 178 (515)
Q Consensus 123 ------------~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-----~~----~~~---~~v~~LSGG 178 (515)
++..++..|++.+.............. ....+.++++++.. .. ..+ .....+|||
T Consensus 326 l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~-Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 326 LRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTL-HAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEE-ECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCccccc-ccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 123445555443322221110000000 00112233333322 21 122 223458999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEE--EeCCCchHHHhhc
Q psy10236 179 ELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVIL--TLQPPTYEIFTMI 248 (515)
Q Consensus 179 erqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiii--s~h~~~~~i~~~~ 248 (515)
|+||+++|. + | |+|||+.....+.+.|.++...+ +++++ ++|. ..++...|
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~------~tii~~~~sH~-l~ei~~~~ 457 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKE------DKHIEVSMPKK-LEKMADFL 457 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTT------TEEEECSCCTH-HHHHHHHH
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccC------CEEEEcccHHH-HHHHHHHc
Confidence 999987651 2 7 99999988777777777765544 67764 6665 44566555
No 142
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.31 E-value=1.2e-13 Score=139.32 Aligned_cols=107 Identities=12% Similarity=0.029 Sum_probs=74.5
Q ss_pred EEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEE---CCeeCChh--hh-ccceEEEecCCC--------------
Q psy10236 63 EVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVIL---NGHSIPLN--AL-KRRLVYVRSQSF-------------- 122 (515)
Q Consensus 63 ~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~---~G~~~~~~--~~-~~~i~yv~q~~~-------------- 122 (515)
++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|++++.. .. .+.++|++|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 45579999999999999999999999999999999999 89887432 11 236899999874
Q ss_pred --CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCc-ccccCcccCCCh
Q psy10236 123 --LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-QVLSTRVGRLTT 177 (515)
Q Consensus 123 --~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSG 177 (515)
++|++|+ ||+.|.. +.. ..+...++.++++.+||. +..++++..||+
T Consensus 245 ~~l~~~~~~-~n~~~~~-~~~------~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFSD-CNH------VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp GGGSTTSSS-CCCSSTT-CCS------SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhccc-ccCcCCC-CcC------CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5888899 8887753 111 112235688899999995 778888888885
No 143
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.28 E-value=1.3e-11 Score=128.97 Aligned_cols=152 Identities=12% Similarity=0.101 Sum_probs=92.0
Q ss_pred eeee-EEEEecCeEEEEEcCCCchHHHHHH--HHhCCCCCCe-----eEEEECCeeC-Chhh---hccceEEEecCCCCC
Q psy10236 57 VQGV-SFEVKGSEVLAIMSTSALEGKAILD--ALAGRNDAKA-----FQVILNGHSI-PLNA---LKRRLVYVRSQSFLS 124 (515)
Q Consensus 57 L~~v-s~~v~~Gei~aIiG~nGaGKSTLl~--~L~G~~~~~~-----G~I~~~G~~~-~~~~---~~~~i~yv~q~~~~~ 124 (515)
|+.+ .+-+++|++++|+||||||||||++ ++.+..+++. +.++++++.. .... +.+++++.+|
T Consensus 167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~----- 241 (400)
T 3lda_A 167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD----- 241 (400)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-----
T ss_pred HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-----
Confidence 4442 3679999999999999999999999 4457776643 3677777642 1111 1122222111
Q ss_pred CCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHH--HHHHHHHHHHH--hCCCEEEEeC
Q psy10236 125 PELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSE--LKRLSIACCLM--SHADILLLDC 200 (515)
Q Consensus 125 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGe--rqRv~IA~aL~--~~p~lLlLDE 200 (515)
++.+|+.+ .....++ .+.+.-+..++ .+|+++++||
T Consensus 242 ---~vleni~~-------------------------------------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs 281 (400)
T 3lda_A 242 ---DALNNVAY-------------------------------------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDS 281 (400)
T ss_dssp ---HHHHTEEE-------------------------------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEET
T ss_pred ---hHhhcEEE-------------------------------------eccCChHHHHHHHHHHHHHHHhcCCceEEecc
Confidence 12222111 1111122 22222233332 4799999999
Q ss_pred CCCCCChhhH------------HHHHHHHHHHHhCCCCCCCCcEEEEEeCCCc------------------hHHHhhccE
Q psy10236 201 PTVFMDIFDT------------FFLVEFLRGWASGGPAGMAGKMVILTLQPPT------------------YEIFTMISR 250 (515)
Q Consensus 201 PtsgLD~~~~------------~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~------------------~~i~~~~Dr 250 (515)
|++.+|.... .++++.|++++++. +.+||+++|... ..+...+|.
T Consensus 282 ~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~-----gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~ 356 (400)
T 3lda_A 282 VMALYRTDFSGRGELSARQMHLAKFMRALQRLADQF-----GVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTT 356 (400)
T ss_dssp GGGGCC------CCHHHHHHHHHHHHHHHHHHHHHH-----CCEEEEEEEC--------------------CHHHHHCSE
T ss_pred hhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHc-----CCEEEEEEeecccCCccccccCCCccCCchhHHHHhcce
Confidence 9999996433 67888888887652 378999988711 234678999
Q ss_pred EEEEeCCe
Q psy10236 251 VLLVSGGR 258 (515)
Q Consensus 251 v~vL~~G~ 258 (515)
+++|++++
T Consensus 357 vl~L~~~~ 364 (400)
T 3lda_A 357 RLGFKKGK 364 (400)
T ss_dssp EEEEEECS
T ss_pred EEEEEecC
Confidence 99998764
No 144
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.27 E-value=1.4e-14 Score=146.43 Aligned_cols=140 Identities=13% Similarity=0.110 Sum_probs=101.0
Q ss_pred CeEEEEeeEEeCCCCCcceeeeeEEEE-------------------ecCeEEEEEcCCCchHHHHHHHHhCCCC--CCee
Q psy10236 38 PHLQVRGLEVPPSSKNKCFVQGVSFEV-------------------KGSEVLAIMSTSALEGKAILDALAGRND--AKAF 96 (515)
Q Consensus 38 ~~L~v~~l~~~~~~~~~~iL~~vs~~v-------------------~~Gei~aIiG~nGaGKSTLl~~L~G~~~--~~~G 96 (515)
.+++++||++.| .++++++++.+ .+|+++||+||||||||||+++|+|++. |++|
T Consensus 36 ~~i~~~~v~~~y----~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 36 EDLSLEEVAEIY----LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TTCCHHHHHHTH----HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred cccchHhHHHHH----HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 368899999876 36899999988 9999999999999999999999999988 9999
Q ss_pred EEEE---CCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCccc
Q psy10236 97 QVIL---NGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVG 173 (515)
Q Consensus 97 ~I~~---~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~ 173 (515)
+|.+ +|..... ..++.++++ |...+++.+++.+++.+...++.... .+ ..+.-
T Consensus 112 ~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~------------------~i----~~P~~ 167 (308)
T 1sq5_A 112 RVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP------------------NV----TAPVY 167 (308)
T ss_dssp CEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS------------------CE----EECCE
T ss_pred eEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC------------------ce----ecccc
Confidence 9999 8877543 234567888 77777888999999988766543210 00 00111
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCh
Q psy10236 174 RLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207 (515)
Q Consensus 174 ~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~ 207 (515)
+.+.+ +|+..+.+.+.+|+++|+|.|....+.
T Consensus 168 ~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 168 SHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 11111 222222233457899999999998874
No 145
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.26 E-value=6.1e-15 Score=153.47 Aligned_cols=169 Identities=14% Similarity=0.122 Sum_probs=119.1
Q ss_pred EEecCeEEEEEcCCCchHHHHHHHHhC------------CCCCCeeEEEECCeeCChh----hhccce---EEEecCCCC
Q psy10236 63 EVKGSEVLAIMSTSALEGKAILDALAG------------RNDAKAFQVILNGHSIPLN----ALKRRL---VYVRSQSFL 123 (515)
Q Consensus 63 ~v~~Gei~aIiG~nGaGKSTLl~~L~G------------~~~~~~G~I~~~G~~~~~~----~~~~~i---~yv~q~~~~ 123 (515)
.+++|+.++|+|+||||||||+|+|+| ...|+.|.+.++|..+... ..++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 456899999999999999999999999 4568899999998543210 112222 366677777
Q ss_pred CCCCCHHHHH--HHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCC--CEEEEe
Q psy10236 124 SPELNVAQTL--TFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHA--DILLLD 199 (515)
Q Consensus 124 ~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p--~lLlLD 199 (515)
.+..+..|++ .|...++... .++..++.. .+..+..+||+. +| +++++|
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d-------------~il~Vvd~~--~d~~i~~v~~~~------------dP~~di~ild 148 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVD-------------AIYQVVRAF--DDAEIIHVEGDV------------DPIRDLSIIV 148 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCS-------------EEEEEEECC--CTTCSSCCSSSS------------CHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHH-------------HHHHHHhcc--ccceeeeecccc------------Ccchhhhhch
Confidence 7777766655 3433333210 011112221 134444567764 89 999999
Q ss_pred CCCCCCChhhHHHHHHHHHHH-HhCCCCCCCCcEEEEEeCCCchHHHhhccEEE-EEeCC-eEEEecCccc
Q psy10236 200 CPTVFMDIFDTFFLVEFLRGW-ASGGPAGMAGKMVILTLQPPTYEIFTMISRVL-LVSGG-RTMYSGKRRD 267 (515)
Q Consensus 200 EPtsgLD~~~~~~i~~~L~~l-~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~-vL~~G-~iv~~G~~~~ 267 (515)
||+.++|+......++.++.+ ++.| +|++ +|. ..++.++||++. +|.+| ++++.|+.++
T Consensus 149 eel~~~D~~~~~k~~~~l~~~~~~~g------~ti~--sh~-~~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 149 DELLIKDAEFVEKHLEGLRKITSRGA------NTLE--MKA-KKEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSS------CSSS--HHH-HHHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcC------Cccc--ccc-HHHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 999999999999999999987 5544 5543 564 567899999999 99999 9988876543
No 146
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.21 E-value=3.6e-14 Score=134.94 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=34.8
Q ss_pred EecCeEEEEEcCCCchHHHHHHHHhCCCCC---CeeEEEECCeeC
Q psy10236 64 VKGSEVLAIMSTSALEGKAILDALAGRNDA---KAFQVILNGHSI 105 (515)
Q Consensus 64 v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~---~~G~I~~~G~~~ 105 (515)
.++|++++|+||||||||||+++|+|+++| ..|.|.++|..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 478999999999999999999999999875 356666665544
No 147
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.20 E-value=2e-15 Score=150.25 Aligned_cols=129 Identities=10% Similarity=0.097 Sum_probs=91.2
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceEEEecCC-CCCCCCC
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLVYVRSQS-FLSPELN 128 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~-~~~~~lT 128 (515)
+..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.++.. ....+.+++++|.. ...|.++
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~ 107 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVI 107 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeE
Confidence 456799999999999 999999999999999999998876 789999987632 12344566666653 3445555
Q ss_pred HHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q psy10236 129 VAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTV 203 (515)
Q Consensus 129 v~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPts 203 (515)
+.|++......+. . ... . .+....++.+.+|||||+||+.|++++.++|++| |||+.
T Consensus 108 ~~Deid~~~~~r~-------~---~~~----~--~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 108 FFDEVDALCPRRS-------D---RET----G--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEETCTTTCC-------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred eeehhhhhhcccC-------C---Ccc----h--HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 5555543211110 0 000 0 1234456677789999999999999999999975 99875
No 148
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.19 E-value=1.4e-14 Score=137.06 Aligned_cols=151 Identities=12% Similarity=0.155 Sum_probs=81.4
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCC-------------CCeeEEEECCeeC---ChhhhccceEEEecCCCCCCCCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRND-------------AKAFQVILNGHSI---PLNALKRRLVYVRSQSFLSPELN 128 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~-------------~~~G~I~~~G~~~---~~~~~~~~i~yv~q~~~~~~~lT 128 (515)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++ +...+++.+ .|+..++ ..+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~-~~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIE-HAE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEE-EEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEe-eee
Confidence 5899999999999999999999999865 45555 355433 222232222 1221111 111
Q ss_pred HHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHH----HHHHHH-HHHhCCCEEEEeCCCC
Q psy10236 129 VAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELK----RLSIAC-CLMSHADILLLDCPTV 203 (515)
Q Consensus 129 v~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerq----Rv~IA~-aL~~~p~lLlLDEPts 203 (515)
+.+|+ ++ ...+.++++++.-.. ...+..+ .|-++ ++ .++ +++.+|++++|||+|+
T Consensus 76 ~~~n~------~g--------~~~~~i~~~~~~~~~-~~~~~~~----~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~ 135 (198)
T 1lvg_A 76 FSGNL------YG--------TSKEAVRAVQAMNRI-CVLDVDL----QGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLR 135 (198)
T ss_dssp ETTEE------EE--------EEHHHHHHHHHTTCE-EEEECCH----HHHHHHTTSSC-CCEEEEEECSCHHHHHHHHH
T ss_pred ecCcc------CC--------CCHHHHHHHHHcCCc-EEEECCH----HHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHH
Confidence 11111 10 011223333332100 0000000 11111 12 455 6788888999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEEEeC
Q psy10236 204 FMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG 256 (515)
Q Consensus 204 gLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~vL~~ 256 (515)
++|..+...|.+.|.+..+. +...|.+ ..||+|+++++
T Consensus 136 ~~d~~~e~~i~~~l~~~~~~----------~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 136 LRNTETEESLAKRLAAARTD----------MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp HHTCSCHHHHHHHHHHHHHH----------TTGGGST-----TTCSEEEECSS
T ss_pred hcCCCCHHHHHHHHHHHHHH----------HHHhhcc-----CCceEEEECCC
Confidence 99999999999999887542 1122311 56899887753
No 149
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.17 E-value=1.5e-12 Score=131.30 Aligned_cols=119 Identities=11% Similarity=0.039 Sum_probs=70.3
Q ss_pred EEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEE---CCeeCChh-h-hccceEEEecCCCCCC----CCCHHHH
Q psy10236 62 FEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVIL---NGHSIPLN-A-LKRRLVYVRSQSFLSP----ELNVAQT 132 (515)
Q Consensus 62 ~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~---~G~~~~~~-~-~~~~i~yv~q~~~~~~----~lTv~e~ 132 (515)
+++.+|++++|+||||+|||||+|+|+|..++.+|+|.+ +|+..+.. . .+..++|+.|.+.+.+ .+|+ |+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 456789999999999999999999999999999999999 88776432 1 2223799999987765 6899 88
Q ss_pred HH--HHh------hcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHH
Q psy10236 133 LT--FYS------HLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKR 182 (515)
Q Consensus 133 l~--~~~------~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqR 182 (515)
+. |.. .++.... ....+....++++++.++|.+...+....++.|++||
T Consensus 247 l~~~f~~~~~~~~~C~f~~c-~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGC-LHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTC-CSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccccCC-CCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 83 321 1111100 0011223567889999999876656666777787763
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.15 E-value=2.4e-11 Score=122.58 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=84.7
Q ss_pred eeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhh
Q psy10236 59 GVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSH 138 (515)
Q Consensus 59 ~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~ 138 (515)
.+++..++|++++|+|+|||||||+++.|++.+.+..|+|.+.+.+..... ..
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~-------------------a~-------- 148 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA-------------------AI-------- 148 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH-------------------HH--------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH-------------------HH--------
Confidence 345567899999999999999999999999999888888888776531100 01
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHH---HHHHHHHhCCCEEEEeCCCCCCChhhHHHHHH
Q psy10236 139 LRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRL---SIACCLMSHADILLLDCPTVFMDIFDTFFLVE 215 (515)
Q Consensus 139 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv---~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~ 215 (515)
+.+..+.+..|+.. +...|||+.+++ ++++++..+|+++|+|||.. ......+++
T Consensus 149 --------------eqL~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~ 206 (306)
T 1vma_A 149 --------------EQLKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLME 206 (306)
T ss_dssp --------------HHHHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHH
T ss_pred --------------HHHHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHH
Confidence 11223455566643 335789999999 89999999999999999974 455666666
Q ss_pred HHHHHH
Q psy10236 216 FLRGWA 221 (515)
Q Consensus 216 ~L~~l~ 221 (515)
.|+++.
T Consensus 207 eL~~l~ 212 (306)
T 1vma_A 207 ELRKVH 212 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 151
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.07 E-value=1.6e-11 Score=118.54 Aligned_cols=172 Identities=8% Similarity=-0.035 Sum_probs=89.8
Q ss_pred cceeeee-EEEEecCeEEEEEcCCCchHHHHHHHH-hCCCCCCeeEEEECCeeCChhhhc---cceEEEecCCCCCCCCC
Q psy10236 54 KCFVQGV-SFEVKGSEVLAIMSTSALEGKAILDAL-AGRNDAKAFQVILNGHSIPLNALK---RRLVYVRSQSFLSPELN 128 (515)
Q Consensus 54 ~~iL~~v-s~~v~~Gei~aIiG~nGaGKSTLl~~L-~G~~~~~~G~I~~~G~~~~~~~~~---~~i~yv~q~~~~~~~lT 128 (515)
...|+++ .+-+++|++++|.||||||||||+..+ .+..+...+.++++++.. ...+. +.+++.+|+......++
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~~~~~~~~~~~l~ 87 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGWDVKPYEEKGMFA 87 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTCCCHHHHHHTSEE
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCCCHHHHhhCCcEE
Confidence 3457776 778999999999999999999996544 444444444555554432 22111 11222221100000000
Q ss_pred HHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH--hCCCEEEEeCCCCCC-
Q psy10236 129 VAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM--SHADILLLDCPTVFM- 205 (515)
Q Consensus 129 v~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~--~~p~lLlLDEPtsgL- 205 (515)
+.+ ... ..++.....+.....-+....+....++.++ .+|+++++|+|++.+
T Consensus 88 ~~~-------~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~ 142 (247)
T 2dr3_A 88 MVD-------AFT------------------AGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYI 142 (247)
T ss_dssp EEE-------CST------------------TTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTT
T ss_pred EEe-------cch------------------hhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhc
Confidence 000 000 0000000000000000111222233333333 589999999999988
Q ss_pred -ChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchH-------HHhhccEEEEEeC
Q psy10236 206 -DIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYE-------IFTMISRVLLVSG 256 (515)
Q Consensus 206 -D~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~-------i~~~~Drv~vL~~ 256 (515)
|+....+++..|.+++++. +.+|++++|..... +.+.||.|+.|+.
T Consensus 143 ~~~~~~~~~l~~l~~~~~~~-----~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 143 NKPAMARSIILQLKRVLAGT-----GCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TCGGGHHHHHHHHHHHHHHT-----TCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHC-----CCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 6655666666676665432 37888888875431 4678999999964
No 152
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.04 E-value=7.1e-11 Score=125.56 Aligned_cols=182 Identities=13% Similarity=0.089 Sum_probs=113.8
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCee-EEEECCeeCChhhhccce-EEEecCCCCCCCCCHHH
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAF-QVILNGHSIPLNALKRRL-VYVRSQSFLSPELNVAQ 131 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G-~I~~~G~~~~~~~~~~~i-~yv~q~~~~~~~lTv~e 131 (515)
...|+++.+-+++|+++.|.|+||+|||||+..+++...+..| .|.+.+.+.+...+.+++ +.... ... +
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~-~ 261 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA-Q 261 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-H
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-H
Confidence 4568888888999999999999999999999999886554333 344433333322221111 00000 000 0
Q ss_pred HHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH--hCCCEEEEeCCCCCCCh--
Q psy10236 132 TLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM--SHADILLLDCPTVFMDI-- 207 (515)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~--~~p~lLlLDEPtsgLD~-- 207 (515)
.+ +... . ......++.+.++.++..+..-....++|.+|.+ +.++.+. .+|+++++|+++...+.
T Consensus 262 ~l------~~g~--l-~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~ 330 (454)
T 2r6a_A 262 NL------RTGK--L-TPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGR 330 (454)
T ss_dssp HH------HTSC--C-CHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC
T ss_pred HH------hcCC--C-CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCC
Confidence 11 1110 0 1222334555666665444433335679999987 5667776 68999999999998753
Q ss_pred ------hhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCC-----------Cc-------hHHHhhccEEEEEeCCeE
Q psy10236 208 ------FDTFFLVEFLRGWASGGPAGMAGKMVILTLQP-----------PT-------YEIFTMISRVLLVSGGRT 259 (515)
Q Consensus 208 ------~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~-----------~~-------~~i~~~~Drv~vL~~G~i 259 (515)
....++.+.|+.++++. +.+||+++|- |. ..+...||.|++|+.++.
T Consensus 331 ~~~~~~~~i~~i~~~Lk~lAke~-----~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 331 SKENRQQEVSEISRSLKALAREL-----EVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp ----CHHHHHHHHHHHHHHHHHH-----TCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHh-----CCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 23366777788887652 3788888871 22 146778999999987754
No 153
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.03 E-value=3.9e-11 Score=127.66 Aligned_cols=52 Identities=4% Similarity=-0.071 Sum_probs=49.2
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCC
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP 106 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~ 106 (515)
..+|+|+||++++ |+++|+|||||||||||++|+|+++|++|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 4579999999999 999999999999999999999999999999999998773
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.03 E-value=4.3e-10 Score=112.80 Aligned_cols=132 Identities=13% Similarity=0.071 Sum_probs=92.9
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEec
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRS 119 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q 119 (515)
+.++++++.+. ... ++++++ +|++++++|+||+||||++..|+|.+.+..|+|.+.+.+.......
T Consensus 77 ~~~~~l~~~~~--~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~-------- 142 (295)
T 1ls1_A 77 TVYEALKEALG--GEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR-------- 142 (295)
T ss_dssp HHHHHHHHHTT--SSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH--------
T ss_pred HHHHHHHHHHC--CCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH--------
Confidence 55667776652 222 788888 9999999999999999999999999988888998887765321100
Q ss_pred CCCCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEe
Q psy10236 120 QSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLD 199 (515)
Q Consensus 120 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLD 199 (515)
+.+ ..+.+..|+.-..... .-.-.+.+|.+|+++...+++++|+|
T Consensus 143 -----------~ql----------------------~~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~~~D~viiD 187 (295)
T 1ls1_A 143 -----------EQL----------------------RLLGEKVGVPVLEVMD--GESPESIRRRVEEKARLEARDLILVD 187 (295)
T ss_dssp -----------HHH----------------------HHHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred -----------HHH----------------------HHhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 000 0112334443221100 12234557889999988999999999
Q ss_pred CC-CCCCChhhHHHHHHHHHHH
Q psy10236 200 CP-TVFMDIFDTFFLVEFLRGW 220 (515)
Q Consensus 200 EP-tsgLD~~~~~~i~~~L~~l 220 (515)
|| +.++|.....++.+..+.+
T Consensus 188 tpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 188 TAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHhhhc
Confidence 99 9999998888887777765
No 155
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.99 E-value=3.3e-10 Score=113.75 Aligned_cols=144 Identities=14% Similarity=0.222 Sum_probs=89.8
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPK 144 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~ 144 (515)
.+|++++++|+||+||||+++.|++.+.+++| +++.++.++.. ..+..|.+...+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~~----- 159 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH---------------KKIAFITTDTY---RIAAVEQLKTYAEL----- 159 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC---------------CCEEEEECCCS---STTHHHHHHHHHTT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC---------------CEEEEEecCcc---cchHHHHHHHHHHh-----
Confidence 47999999999999999999999998877666 24566655442 23555665543321
Q ss_pred CCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCC
Q psy10236 145 HSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGG 224 (515)
Q Consensus 145 ~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g 224 (515)
.|+..... .+. ..-+.+++ .+.+|+++|+| |+|+|+.....+.++.+-+....
T Consensus 160 -----------------~gl~~~~~-----~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~ 212 (296)
T 2px0_A 160 -----------------LQAPLEVC-----YTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFES 212 (296)
T ss_dssp -----------------TTCCCCBC-----SSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCT
T ss_pred -----------------cCCCeEec-----CCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcC
Confidence 22221110 122 22345555 45999999999 99999987765555444332111
Q ss_pred CCCCCCcEEEE-EeCCCchHHHhhccEEEEEeCCeEEEe
Q psy10236 225 PAGMAGKMVIL-TLQPPTYEIFTMISRVLLVSGGRTMYS 262 (515)
Q Consensus 225 ~~~~~~~tiii-s~h~~~~~i~~~~Drv~vL~~G~iv~~ 262 (515)
..+.++++ ++|. ..++.+.++++..+..+.++..
T Consensus 213 ---~~~~~lVl~at~~-~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 213 ---SIQSFLVLSATAK-YEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp ---TEEEEEEEETTBC-HHHHHHHTTTTSSSCCCEEEEE
T ss_pred ---CCeEEEEEECCCC-HHHHHHHHHHHhcCCCCEEEEe
Confidence 01234555 3454 4578888887766777777764
No 156
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.95 E-value=7.7e-12 Score=137.67 Aligned_cols=160 Identities=11% Similarity=0.016 Sum_probs=104.4
Q ss_pred CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCe-eEEEECCeeCChhhhccceEEEecCC---------
Q psy10236 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKA-FQVILNGHSIPLNALKRRLVYVRSQS--------- 121 (515)
Q Consensus 52 ~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~-G~I~~~G~~~~~~~~~~~i~yv~q~~--------- 121 (515)
+...+++++++.+.+|+.++|+||||+|||||+++|++..++.. |.+.+++.+... ....++++++..
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHH
Confidence 56778999999999999999999999999999999999998876 889888876532 344577776542
Q ss_pred -------------CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHH
Q psy10236 122 -------------FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACC 188 (515)
Q Consensus 122 -------------~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~a 188 (515)
..+..+++.+|+.....-..+. . .... .....-+.+|..+......+.+|+|++|++..++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~-~-~v~~---~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~ 197 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKA-P-FIDA---TGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMI 197 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSC-C-EEEC---TTCCHHHHHCEECCCCC----CCCCGGGGEECCHH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCC-C-EEEc---CCCCHHhcCceEEechhhcCCccccccccccCcee
Confidence 1122222222221100000000 0 0000 00012233443333333446799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCChhhHHHHHHHHHH
Q psy10236 189 LMSHADILLLDCPTVFMDIFDTFFLVEFLRG 219 (515)
Q Consensus 189 L~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~ 219 (515)
...++.+|++||... |++..+..+.+.|.+
T Consensus 198 ~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 198 HRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999998 899888888888874
No 157
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.94 E-value=2.3e-11 Score=114.35 Aligned_cols=69 Identities=9% Similarity=0.037 Sum_probs=48.8
Q ss_pred EEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChh---hhccceEEEecCCCCCCCCCHHHHH
Q psy10236 61 SFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLN---ALKRRLVYVRSQSFLSPELNVAQTL 133 (515)
Q Consensus 61 s~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~---~~~~~i~yv~q~~~~~~~lTv~e~l 133 (515)
|+++.+|++++|+||||||||||+++|+|+.+ .+.+++...... ..+..++|++|+...++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56788999999999999999999999999864 477777655321 2356788999876655555554443
No 158
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.94 E-value=1.8e-09 Score=110.79 Aligned_cols=153 Identities=18% Similarity=0.169 Sum_probs=88.7
Q ss_pred eeeeeE--EEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHH
Q psy10236 56 FVQGVS--FEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTL 133 (515)
Q Consensus 56 iL~~vs--~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l 133 (515)
-|+.+- +-+++|+++.|.||||+|||||+..++.......| .+.|+.-+....+ .
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~----------------~vlyi~~E~~~~~------~- 104 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG----------------IAAFIDAEHALDP------E- 104 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC----------------CEEEEESSCCCCH------H-
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC----------------eEEEEECCCCcCH------H-
Confidence 455543 47899999999999999999998888754322212 2444433321110 0
Q ss_pred HHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcc-cCCChHHHHHHHHHHHHHhC--CCEEEEeCCCCCC-----
Q psy10236 134 TFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRV-GRLTTSELKRLSIACCLMSH--ADILLLDCPTVFM----- 205 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v-~~LSGGerqRv~IA~aL~~~--p~lLlLDEPtsgL----- 205 (515)
.. +.+|+... +-.+ ...+. .+-+.++++++.+ |+++++|||++.+
T Consensus 105 -~a-----------------------~~lG~~~~-~l~i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~ 157 (349)
T 2zr9_A 105 -YA-----------------------KKLGVDTD-SLLVSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEI 157 (349)
T ss_dssp -HH-----------------------HHTTCCGG-GCEEECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHH
T ss_pred -HH-----------------------HHcCCCHH-HeEEecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhh
Confidence 01 11111100 0000 01122 2345678888755 9999999999998
Q ss_pred -----Ch---hhHHHHHHHHHHHH----hCCCCCCCCcEEEEEeCCCch---------------HHHhhccEEEEEeCCe
Q psy10236 206 -----DI---FDTFFLVEFLRGWA----SGGPAGMAGKMVILTLQPPTY---------------EIFTMISRVLLVSGGR 258 (515)
Q Consensus 206 -----D~---~~~~~i~~~L~~l~----~~g~~~~~~~tiiis~h~~~~---------------~i~~~~Drv~vL~~G~ 258 (515)
|+ ..+..+.+.++++. +.+ .+||++.|.... .+..+||.++.++.++
T Consensus 158 ~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~------~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~ 231 (349)
T 2zr9_A 158 EGEMGDSHVGLQARLMSQALRKMTGALNNSG------TTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIE 231 (349)
T ss_dssp TTC----CCCHHHHHHHHHHHHHHHHHHHHT------CEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHhC------CEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEee
Confidence 33 22234555555552 334 788888885421 2567899999998887
Q ss_pred EEEecC
Q psy10236 259 TMYSGK 264 (515)
Q Consensus 259 iv~~G~ 264 (515)
++..|+
T Consensus 232 ~~k~g~ 237 (349)
T 2zr9_A 232 TLKDGT 237 (349)
T ss_dssp EECSSS
T ss_pred eeecCc
Confidence 766554
No 159
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.93 E-value=6.1e-13 Score=132.04 Aligned_cols=136 Identities=10% Similarity=0.070 Sum_probs=87.9
Q ss_pred EEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceEEE
Q psy10236 41 QVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLVYV 117 (515)
Q Consensus 41 ~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~yv 117 (515)
+++++.+.+ ++..+++++++.+++| ++|+||||+|||||+++|++... .|.|.+++.++.. ...++.++++
T Consensus 51 ~l~~l~~~~--~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 51 ELKEIVEFL--KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHH--HCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHH--HCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 344444433 3456789999999999 89999999999999999999875 7889998866421 1223345566
Q ss_pred ecCCC-CCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCE
Q psy10236 118 RSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADI 195 (515)
Q Consensus 118 ~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~l 195 (515)
+|... ..|.+++.|++......+............+.+.++ +.+|||||+||+.+++++..+|++
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH-------------HHHHTTCCTTCCEEEEEEESCTTS
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH-------------HHHHhCCCCCCCEEEEEecCCchh
Confidence 66532 456677777774332211100000011222233333 345899999999999999999976
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.89 E-value=8e-13 Score=129.15 Aligned_cols=142 Identities=11% Similarity=0.074 Sum_probs=91.0
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh---hhhccceEE
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRRLVY 116 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~---~~~~~~i~y 116 (515)
.+++++.+.+ ++..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.++.. ...++.+++
T Consensus 26 ~~l~~l~~~~--~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 26 EELKEIVEFL--KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHH--HCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHH--HCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 4555665544 3456899999999999 89999999999999999999875 7889998865421 112334555
Q ss_pred EecCC-CCCCCCCHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCE
Q psy10236 117 VRSQS-FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADI 195 (515)
Q Consensus 117 v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~l 195 (515)
++|.. ...|.+++.|++......+.........+..+.+.+++ ..|||||+||+.+++++..+|++
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHH-------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH-------------HHHhCCCCCCCEEEEEccCCchh
Confidence 66653 24566677777743322111100001112222333333 35789999999999999999986
Q ss_pred EEEeCCC
Q psy10236 196 LLLDCPT 202 (515)
Q Consensus 196 LlLDEPt 202 (515)
+|++.
T Consensus 167 --ld~~l 171 (254)
T 1ixz_A 167 --LDPAL 171 (254)
T ss_dssp --SCGGG
T ss_pred --CCHHH
Confidence 56543
No 161
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.88 E-value=5.7e-11 Score=127.28 Aligned_cols=166 Identities=16% Similarity=0.063 Sum_probs=101.6
Q ss_pred eeEEEEecCeEEEEEcCCCchHHHHHHHHhC--CCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCC--CHHHHHH
Q psy10236 59 GVSFEVKGSEVLAIMSTSALEGKAILDALAG--RNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPEL--NVAQTLT 134 (515)
Q Consensus 59 ~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G--~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~l--Tv~e~l~ 134 (515)
.+++++.++..++|.|++||||||+++.|.. +.+.+.|++.+.+.+.....+.. ....|++ +|.++..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~--------~~~lPhl~~~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSV--------YEGIPHLLTEVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGG--------GTTCTTBSSSCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhh--------hccCCcccceeecCHH
Confidence 5788889999999999999999999998875 44555566666555542211110 0011221 1212221
Q ss_pred HHhh-cCCCCCCCchhhHHHHHHHHHHHcCCcccccC--c-ccCCChHHHHHH----------HHHHHHHhCCC-EEEEe
Q psy10236 135 FYSH-LRRPPKHSIKVTTSEQMGLLIEELGLTQVLST--R-VGRLTTSELKRL----------SIACCLMSHAD-ILLLD 199 (515)
Q Consensus 135 ~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--~-v~~LSGGerqRv----------~IA~aL~~~p~-lLlLD 199 (515)
.... ++. ...+.+++ .++++..|+.+..+. + ...+|+||+||. .+|+++...|. ++++|
T Consensus 231 ~a~~~L~~-----~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvID 304 (512)
T 2ius_A 231 DAANALRW-----CVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVD 304 (512)
T ss_dssp HHHHHHHH-----HHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEE
T ss_pred HHHHHHHH-----HHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEe
Confidence 1111 110 01233334 367888898765332 2 235899998753 35566677887 78999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCc
Q psy10236 200 CPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPT 241 (515)
Q Consensus 200 EPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~ 241 (515)
|++.-+|.. ...+.+.|.++++.| ...|..+|+++|.|.
T Consensus 305 E~~~ll~~~-~~~~~~~l~~Lar~g--Ra~GI~LIlaTQrp~ 343 (512)
T 2ius_A 305 EFADLMMTV-GKKVEELIARLAQKA--RAAGIHLVLATQRPS 343 (512)
T ss_dssp THHHHHHHH-HHHHHHHHHHHHHHC--GGGTEEEEEEESCCC
T ss_pred CHHHHHhhh-hHHHHHHHHHHHHHh--hhCCcEEEEEecCCc
Confidence 999988843 456777777776654 112478999999986
No 162
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.85 E-value=1.5e-09 Score=101.06 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHH
Q psy10236 181 KRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRG 219 (515)
Q Consensus 181 qRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~ 219 (515)
+.+.+|++++.+|+++++| ||++|..+..++.+.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999999998875
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.83 E-value=9.3e-11 Score=113.19 Aligned_cols=72 Identities=10% Similarity=0.028 Sum_probs=50.1
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-----------
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL----------- 107 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~----------- 107 (515)
.|+++|+...+ + . ++++.+ ++++|+|||||||||||++|+|.+.|++|+|.++|.++..
T Consensus 9 ~l~l~~~~~~~--~------~-~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFF--A------R-TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEE--E------E-EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeeccc--C------C-EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 57888885432 1 1 566667 8999999999999999999999999999999999987621
Q ss_pred hhhccceEEEecC
Q psy10236 108 NALKRRLVYVRSQ 120 (515)
Q Consensus 108 ~~~~~~i~yv~q~ 120 (515)
...+..++|++|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 1135678999874
No 164
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.69 E-value=5.8e-10 Score=104.35 Aligned_cols=37 Identities=8% Similarity=-0.016 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHH
Q psy10236 183 LSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWA 221 (515)
Q Consensus 183 v~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~ 221 (515)
...|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887653
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.68 E-value=5e-08 Score=100.61 Aligned_cols=146 Identities=16% Similarity=0.197 Sum_probs=88.2
Q ss_pred cCeE-EEEEcCCCchHHHHHHHHhCCCC-----------CCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHH--
Q psy10236 66 GSEV-LAIMSTSALEGKAILDALAGRND-----------AKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQ-- 131 (515)
Q Consensus 66 ~Gei-~aIiG~nGaGKSTLl~~L~G~~~-----------~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e-- 131 (515)
.|-. ++|+|++|||||||+|.|+|... ++.|.|.++|.++. +....|++.+. |...|..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~l----p~~lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGI----PPQIVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSC----CGGGHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcC----CHHHHHHHH
Confidence 3444 99999999999999999999865 56789999886541 22234443321 1112221
Q ss_pred -HHHHHhhc----CC-CCCCCc--hhhHHHHHHHHHHHcCCcccc----cCcccCCChHHHHHHHHH----HHH-HhCCC
Q psy10236 132 -TLTFYSHL----RR-PPKHSI--KVTTSEQMGLLIEELGLTQVL----STRVGRLTTSELKRLSIA----CCL-MSHAD 194 (515)
Q Consensus 132 -~l~~~~~~----~~-~~~~~~--~~~~~~~v~~~l~~lgL~~~~----~~~v~~LSGGerqRv~IA----~aL-~~~p~ 194 (515)
++...... .. ...... .....+.+.++++.+++.+.. ..++..+|+|+++|+.++ +++ ..+|+
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 11111000 00 000111 112223456778888875543 455667898999988887 444 33344
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHh
Q psy10236 195 ILLLDCPTVFMDIFDTFFLVEFLRGWAS 222 (515)
Q Consensus 195 lLlLDEPtsgLD~~~~~~i~~~L~~l~~ 222 (515)
+ +|+|++|......+.+.|.++..
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999988654
No 166
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.68 E-value=2.9e-09 Score=102.38 Aligned_cols=39 Identities=13% Similarity=0.029 Sum_probs=23.5
Q ss_pred ceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHh-CCCCC
Q psy10236 55 CFVQGVSFEVKGSEVLAIMSTSALEGKAILDALA-GRNDA 93 (515)
Q Consensus 55 ~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~-G~~~~ 93 (515)
+..+++||++++|++++|+||||||||||+++|+ |+.++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4689999999999999999999999999999999 99865
No 167
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.65 E-value=5.6e-09 Score=107.22 Aligned_cols=66 Identities=3% Similarity=-0.084 Sum_probs=44.4
Q ss_pred ceeeeeE--EEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEE-EECCeeCChhhhccceEEEecC
Q psy10236 55 CFVQGVS--FEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQV-ILNGHSIPLNALKRRLVYVRSQ 120 (515)
Q Consensus 55 ~iL~~vs--~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I-~~~G~~~~~~~~~~~i~yv~q~ 120 (515)
.-|+.+- +-+++|+++.|.||||+|||||+..+++...+..|.+ +++++......+.+++++.+|+
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~ 115 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKS 115 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGG
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhh
Confidence 3455543 3689999999999999999999999998766555644 5555543222233444444443
No 168
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.57 E-value=4.9e-11 Score=123.53 Aligned_cols=139 Identities=9% Similarity=0.047 Sum_probs=81.7
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCC-CCCCCCHHHH
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSF-LSPELNVAQT 132 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~-~~~~lTv~e~ 132 (515)
..+++++++.+++|++++|+||||||||||+++|+|. .+|++...+.+ .......+++++|... ++.+++....
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~--~~~~~~~lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLP--LDRLNFELGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSC--TTTHHHHHGGGTTCSCEEETTCCCSTT
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEecc--chhHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999985 46776652211 1111223555555432 1222221110
Q ss_pred HHHHhhcCCCCCCCchhhHHHHHHHHHHH---cCCc-------------ccccCcccCCChHHHHHHHHHHHHHhCCCEE
Q psy10236 133 LTFYSHLRRPPKHSIKVTTSEQMGLLIEE---LGLT-------------QVLSTRVGRLTTSELKRLSIACCLMSHADIL 196 (515)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~~~~v~~~l~~---lgL~-------------~~~~~~v~~LSGGerqRv~IA~aL~~~p~lL 196 (515)
+ .+.... .........+...++. +.+. ...+.....+++|+++|+..+.+++.+|+++
T Consensus 231 ~-----~r~l~~-~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 231 E-----SRDLPS-GQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp T-----TTTCCC-CSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred H-----Hhhccc-cCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 0 000000 0000001112222220 0011 1234455568999999999888888899988
Q ss_pred E-EeCCCC
Q psy10236 197 L-LDCPTV 203 (515)
Q Consensus 197 l-LDEPts 203 (515)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 7 999987
No 169
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.56 E-value=2.3e-08 Score=92.09 Aligned_cols=42 Identities=14% Similarity=-0.013 Sum_probs=36.6
Q ss_pred cee--eeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeE
Q psy10236 55 CFV--QGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQ 97 (515)
Q Consensus 55 ~iL--~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~ 97 (515)
..+ +++++++.+| +++|+||||||||||+++|.+.+.+..|.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 346 7899999999 99999999999999999999988766543
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.51 E-value=3.7e-09 Score=99.41 Aligned_cols=56 Identities=7% Similarity=-0.025 Sum_probs=39.4
Q ss_pred EEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChh--hhccceEEEecC
Q psy10236 61 SFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLN--ALKRRLVYVRSQ 120 (515)
Q Consensus 61 s~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~--~~~~~i~yv~q~ 120 (515)
.+..++|++++|+||||||||||+++|+|.+ |.+.++|.++... ..+...++++|+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 3566799999999999999999999999976 8899998776321 112235566554
No 171
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.43 E-value=1.1e-08 Score=99.99 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=36.2
Q ss_pred CeEEEEee-EEeCCCCCcceeeeeEEEEec---CeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 38 PHLQVRGL-EVPPSSKNKCFVQGVSFEVKG---SEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 38 ~~L~v~~l-~~~~~~~~~~iL~~vs~~v~~---Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
++++++|+ +++| .++..+|+|+|+++++ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~-~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPF-DEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEe-cCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 57999999 9877 2456799999999999 9999999999999999999999854
No 172
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.41 E-value=2.4e-07 Score=104.58 Aligned_cols=77 Identities=13% Similarity=0.042 Sum_probs=58.3
Q ss_pred cCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCC-CCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhh
Q psy10236 169 STRVGRLTTSELKRLSIACCLMSHADILLLDCPTV-FMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTM 247 (515)
Q Consensus 169 ~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPts-gLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~ 247 (515)
++.+.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+...... .++|++|..++...+.++
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~------~~iIl~SAT~~~~~l~~~ 258 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPD------LKIIIMSATLDAEKFQRY 258 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTT------CEEEEEESCSCCHHHHHH
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCC------ceEEEEeccccHHHHHHH
Confidence 44555689999999999999999999999999996 99987766666666554332 267888644455677778
Q ss_pred ccEE
Q psy10236 248 ISRV 251 (515)
Q Consensus 248 ~Drv 251 (515)
+++.
T Consensus 259 ~~~~ 262 (773)
T 2xau_A 259 FNDA 262 (773)
T ss_dssp TTSC
T ss_pred hcCC
Confidence 7753
No 173
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.40 E-value=1e-08 Score=111.12 Aligned_cols=43 Identities=19% Similarity=0.111 Sum_probs=38.1
Q ss_pred EEecCeEEEEEcCCCchHHHHHHHHhCCCCCCee-EEE-ECCeeC
Q psy10236 63 EVKGSEVLAIMSTSALEGKAILDALAGRNDAKAF-QVI-LNGHSI 105 (515)
Q Consensus 63 ~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G-~I~-~~G~~~ 105 (515)
.+++|++++|+|+||||||||+++|+|++.|++| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5779999999999999999999999999999886 774 888654
No 174
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.39 E-value=6.8e-07 Score=95.18 Aligned_cols=62 Identities=15% Similarity=-0.036 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCC----------CCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCC
Q psy10236 177 TSELKRLSIACCLMSHADILLLDCPT----------VFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPP 240 (515)
Q Consensus 177 GGerqRv~IA~aL~~~p~lLlLDEPt----------sgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~ 240 (515)
|++++|..+++|....|.+|++||+. .|.|......+.++|..+..-+ ...+..||.++|.|
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~--~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD--SKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC--GGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC--CCCCEEEEEecCCh
Confidence 67788889999999999999999994 4677777777777777774211 01135777788876
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.38 E-value=1e-07 Score=89.19 Aligned_cols=35 Identities=3% Similarity=0.036 Sum_probs=29.7
Q ss_pred EEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCee
Q psy10236 62 FEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAF 96 (515)
Q Consensus 62 ~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G 96 (515)
+++.+|++++|+|||||||||++++|++...|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46789999999999999999999999999877655
No 176
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.35 E-value=2.6e-09 Score=114.49 Aligned_cols=149 Identities=12% Similarity=0.070 Sum_probs=92.1
Q ss_pred CcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChh---hhccceEEEecCCC-CCCCCC
Q psy10236 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLN---ALKRRLVYVRSQSF-LSPELN 128 (515)
Q Consensus 53 ~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~---~~~~~i~yv~q~~~-~~~~lT 128 (515)
+..+++++++.+++| +.|+||||+|||||+++|+|... .+.+.++|.++... ...+++..++|... ..|.+.
T Consensus 52 ~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 52 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 345788999999999 89999999999999999999875 67899988765321 11223444455432 334444
Q ss_pred HHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCC----
Q psy10236 129 VAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVF---- 204 (515)
Q Consensus 129 v~e~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsg---- 204 (515)
+.|++......+.........+..+.+.+++. .||||++|+..|+++...+|++ |||+..-
T Consensus 128 ~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------~Ldg~~~~~~viviAatn~p~~--LD~aLlr~gRf 192 (499)
T 2dhr_A 128 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------EMDGFEKDTAIVVMAATNRPDI--LDPALLRPGRF 192 (499)
T ss_dssp EEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------HGGGCCSSCCCEEEECCSCGGG--SCTTTSSTTSS
T ss_pred EEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------HhcccccCccEEEEEecCChhh--cCccccccccc
Confidence 44444321111110000011222333444443 4789999999999999999987 8998753
Q ss_pred -----CChhhHHHHHHHHHHH
Q psy10236 205 -----MDIFDTFFLVEFLRGW 220 (515)
Q Consensus 205 -----LD~~~~~~i~~~L~~l 220 (515)
++.-......++|+..
T Consensus 193 dr~i~i~~Pd~~~R~~IL~~~ 213 (499)
T 2dhr_A 193 DRQIAIDAPDVKGREQILRIH 213 (499)
T ss_dssp CCEEECCCCCHHHHHHHHHHT
T ss_pred ceEEecCCCCHHHHHHHHHHH
Confidence 3444444444455543
No 177
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.32 E-value=8.2e-08 Score=89.11 Aligned_cols=31 Identities=16% Similarity=0.047 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCCCCCCeeE
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGRNDAKAFQ 97 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~ 97 (515)
|++++|+||||||||||+++|+|++++..|.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~ 31 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceE
Confidence 6789999999999999999999998755443
No 178
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.32 E-value=6.8e-08 Score=97.86 Aligned_cols=79 Identities=9% Similarity=0.132 Sum_probs=60.4
Q ss_pred eeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCCh-------hhh-----ccceEEE-ecCCCC
Q psy10236 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL-------NAL-----KRRLVYV-RSQSFL 123 (515)
Q Consensus 57 L~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~-------~~~-----~~~i~yv-~q~~~~ 123 (515)
++++++++++|++++|+|+||+||||++..|++.+.+..|+|.+.+.+... ..+ +.++.++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 478999999999999999999999999999999998888999998877632 122 5568888 665444
Q ss_pred CCCCCHHHHHHH
Q psy10236 124 SPELNVAQTLTF 135 (515)
Q Consensus 124 ~~~lTv~e~l~~ 135 (515)
.|..++.+++..
T Consensus 175 ~p~~~~~~~l~~ 186 (320)
T 1zu4_A 175 DPASVVFDAIKK 186 (320)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444445555443
No 179
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.30 E-value=6.7e-08 Score=94.39 Aligned_cols=57 Identities=14% Similarity=0.009 Sum_probs=48.7
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHh---CCCCCCeeEEE--------ECCeeCCh----hhhccceEEEecCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALA---GRNDAKAFQVI--------LNGHSIPL----NALKRRLVYVRSQS 121 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~---G~~~~~~G~I~--------~~G~~~~~----~~~~~~i~yv~q~~ 121 (515)
++|++++|+|||||||||++++|+ |+..+++|.+. .+|.++.. ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 99999999998 88887732 34567788888753
No 180
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.26 E-value=3.6e-07 Score=93.05 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=79.0
Q ss_pred ceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHH
Q psy10236 55 CFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLT 134 (515)
Q Consensus 55 ~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~ 134 (515)
.-|+.+..-+++|+++.|.|++|+|||||+.-++..... . ...+.|+.- .++..+...
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-------~---------g~~Vl~fSl------Ems~~ql~~ 91 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-------D---------DRGVAVFSL------EMSAEQLAL 91 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-------T---------TCEEEEEES------SSCHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-------c---------CCeEEEEeC------CCCHHHHHH
Confidence 456777667899999999999999999999888753211 1 123555432 233333221
Q ss_pred HHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHH
Q psy10236 135 FYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLV 214 (515)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~ 214 (515)
++......+++.+..+ +.||.++.+|+..|...+.++++++.|+|... ..++.
T Consensus 92 -------------------Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~ 144 (338)
T 4a1f_A 92 -------------------RALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIR 144 (338)
T ss_dssp -------------------HHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHH
T ss_pred -------------------HHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHH
Confidence 1111111122222221 57999999999999999999999999998643 44677
Q ss_pred HHHHHHHhC
Q psy10236 215 EFLRGWASG 223 (515)
Q Consensus 215 ~~L~~l~~~ 223 (515)
..++++.++
T Consensus 145 ~~ir~l~~~ 153 (338)
T 4a1f_A 145 LQLRKLKSQ 153 (338)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777653
No 181
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.26 E-value=2.6e-08 Score=93.52 Aligned_cols=53 Identities=15% Similarity=0.039 Sum_probs=44.6
Q ss_pred CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEE--EECCeeC
Q psy10236 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQV--ILNGHSI 105 (515)
Q Consensus 52 ~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I--~~~G~~~ 105 (515)
+.....+.+++..++|++++|+|||||||||++++|++.+. ..|.+ +++|.++
T Consensus 10 ~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 10 CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 44556777888889999999999999999999999999887 66877 8887654
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.18 E-value=5.8e-08 Score=99.78 Aligned_cols=176 Identities=9% Similarity=0.042 Sum_probs=82.8
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCC--CCCCeeEEEECCeeCCh---hhhccceEEEecCCC-CCCCC
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR--NDAKAFQVILNGHSIPL---NALKRRLVYVRSQSF-LSPEL 127 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~--~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~~l 127 (515)
..+|++++++++ .++|+|++|||||||++.|+|. +++.+|.+.-....+.. .......+...+... .+.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 357899999998 8999999999999999999994 46666655433322210 000112222222111 11110
Q ss_pred -CHHHHHHHHhh-cCCCCCCCchhhHHHHH----HHHHHHcCCcccccCc-ccCCChHHHHHHHHHHHHHhCCCEEEEeC
Q psy10236 128 -NVAQTLTFYSH-LRRPPKHSIKVTTSEQM----GLLIEELGLTQVLSTR-VGRLTTSELKRLSIACCLMSHADILLLDC 200 (515)
Q Consensus 128 -Tv~e~l~~~~~-~~~~~~~~~~~~~~~~v----~~~l~~lgL~~~~~~~-v~~LSGGerqRv~IA~aL~~~p~lLlLDE 200 (515)
.+.+.+.-... ................+ ..-+..+++....+.. .++.++.++++..+++..+.+|+++++.-
T Consensus 101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv 180 (360)
T 3t34_A 101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI 180 (360)
T ss_dssp HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEe
Confidence 11111110000 00000000000000000 0000011111111111 12356788999999999999999888874
Q ss_pred CCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeC
Q psy10236 201 PTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQ 238 (515)
Q Consensus 201 PtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h 238 (515)
..+..|... ....++++.+...+ .+++++.+.
T Consensus 181 ~~~~~~~~~-~~~~~l~~~~~~~~-----~~~i~V~nK 212 (360)
T 3t34_A 181 SPANQDLAT-SDAIKISREVDPSG-----DRTFGVLTK 212 (360)
T ss_dssp EETTSCGGG-CHHHHHHHHSCTTC-----TTEEEEEEC
T ss_pred ecccCCcCC-HHHHHHHHHhcccC-----CCEEEEEeC
Confidence 444455444 45566667665544 256666665
No 183
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.17 E-value=2.6e-07 Score=86.70 Aligned_cols=127 Identities=11% Similarity=0.132 Sum_probs=68.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCCCch
Q psy10236 69 VLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIK 148 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~ 148 (515)
+++|+|+|||||||+.++|+++ |...+++- .+.+.+ ..+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d-----~~~~~~-------------------------~~~~----- 43 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDAD-----VVAREV-------------------------VAKD----- 43 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHH-----HHHHHT-------------------------TCSS-----
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchH-----HHHHHH-------------------------ccCC-----
Confidence 6899999999999999999983 33333221 111100 0000
Q ss_pred hhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCC
Q psy10236 149 VTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGM 228 (515)
Q Consensus 149 ~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~ 228 (515)
...+.++.+.+|.... .+.|+.+|..++.....+|+.+.++ .+.+++.....+.+.++.. .+
T Consensus 44 ---~~~~~~i~~~~g~~~~-------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~---- 105 (206)
T 1jjv_A 44 ---SPLLSKIVEHFGAQIL-------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TA---- 105 (206)
T ss_dssp ---CHHHHHHHHHHCTTCC-------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CS----
T ss_pred ---hHHHHHHHHHhCHHHh-------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CC----
Confidence 0123345566664321 3678889999998888887644332 3345555555554444321 12
Q ss_pred CCcEEEEEeCCCchH-HHhhccEEEEEe
Q psy10236 229 AGKMVILTLQPPTYE-IFTMISRVLLVS 255 (515)
Q Consensus 229 ~~~tiiis~h~~~~~-i~~~~Drv~vL~ 255 (515)
..+|+..|..... +...||.++++.
T Consensus 106 --~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 106 --PYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp --SEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred --CEEEEEechhhhcCcHhhCCEEEEEE
Confidence 4677776653221 256788888773
No 184
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.16 E-value=2.2e-06 Score=87.83 Aligned_cols=112 Identities=12% Similarity=0.124 Sum_probs=70.4
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHHHHHhhcCCCCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKH 145 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l~~~~~~~~~~~~ 145 (515)
..-.++|+|+||+|||||++.|+|... . ..+.+.... ...++.+.++.. .+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~-----~~~~~~~t~--~~~~~~~~~~~~---------------~~------ 216 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-E-----IASYPFTTR--GINVGQFEDGYF---------------RY------ 216 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-E-----EECCTTCSS--CEEEEEEEETTE---------------EE------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-c-----cCCCCCeee--ceeEEEEEecCc---------------eE------
Confidence 344799999999999999999999752 1 112111111 112233322210 00
Q ss_pred CchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEe-CCCCCCChhhHHHHHHHHHHHH
Q psy10236 146 SIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLD-CPTVFMDIFDTFFLVEFLRGWA 221 (515)
Q Consensus 146 ~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLD-EPtsgLD~~~~~~i~~~L~~l~ 221 (515)
..++.....+..+..+|+||+|++. +.+...++-++++| +|..|+|......+++.+.+..
T Consensus 217 --------------~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~ 278 (357)
T 2e87_A 217 --------------QIIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF 278 (357)
T ss_dssp --------------EEEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT
T ss_pred --------------EEEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc
Confidence 0011111223455678999998876 55556778889999 9999999998888887777654
No 185
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=1.1e-06 Score=82.32 Aligned_cols=40 Identities=8% Similarity=-0.010 Sum_probs=24.7
Q ss_pred CCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 52 ~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
+....++||||++.+|++++|+|++||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3456899999999999999999999999999999999765
No 186
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.08 E-value=7.4e-07 Score=82.17 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=30.3
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCCC-CeeEEEE
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRNDA-KAFQVIL 100 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~~-~~G~I~~ 100 (515)
.+|++++|+||||||||||+++|++..++ ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 37899999999999999999999998764 4565544
No 187
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.05 E-value=1.4e-05 Score=81.71 Aligned_cols=46 Identities=9% Similarity=-0.110 Sum_probs=32.3
Q ss_pred hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCC
Q psy10236 191 SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPP 240 (515)
Q Consensus 191 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~ 240 (515)
.+|.++++||+... |......+.+.+.++...+ ..+..+|+++|.+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~---~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLG---AFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHS---SCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCC---cCCEEEEEEECCc
Confidence 45889999999876 8877777777776665410 0026778888875
No 188
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.05 E-value=9.8e-07 Score=84.70 Aligned_cols=40 Identities=10% Similarity=-0.002 Sum_probs=35.2
Q ss_pred EEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeC
Q psy10236 62 FEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI 105 (515)
Q Consensus 62 ~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~ 105 (515)
.+.++|++++|.|+||||||||+++|+|. .|+|.+.+++.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 34478999999999999999999999998 68899988764
No 189
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.97 E-value=2.1e-06 Score=90.69 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=49.9
Q ss_pred hCCCEEEEeCCCCCCCh-hhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccEEEE-EeCCeEEEecCcc
Q psy10236 191 SHADILLLDCPTVFMDI-FDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLL-VSGGRTMYSGKRR 266 (515)
Q Consensus 191 ~~p~lLlLDEPtsgLD~-~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Drv~v-L~~G~iv~~G~~~ 266 (515)
.+|++|++||+..-.+. ..+..+...+..+.+.| +.||+++|.+..++..+.+++.- +..|.++...+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~------~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSG------KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTT------CEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCC------CeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 48999999999887765 67888999998887665 78888888765443333344333 4567777766654
No 190
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.94 E-value=2.8e-06 Score=94.36 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=40.7
Q ss_pred EEEEecCeEEEEEcCCCchHHHHHHHHhCCCCC--CeeEEEECCeeCC---hhhhccceEEEecC
Q psy10236 61 SFEVKGSEVLAIMSTSALEGKAILDALAGRNDA--KAFQVILNGHSIP---LNALKRRLVYVRSQ 120 (515)
Q Consensus 61 s~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~--~~G~I~~~G~~~~---~~~~~~~i~yv~q~ 120 (515)
|+.+++|+.++|+|++|+|||||++.|++...+ ..|+| .+|..+. ....++.+++..|.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~ 66 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGV 66 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecc
Confidence 456788999999999999999999999976654 56877 5665542 12334555555443
No 191
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.93 E-value=1.2e-06 Score=82.16 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=36.1
Q ss_pred EecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCee
Q psy10236 64 VKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHS 104 (515)
Q Consensus 64 v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~ 104 (515)
.++|++++|+|+||||||||++.|++.+++..|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 56899999999999999999999999988778888776554
No 192
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.90 E-value=2.8e-06 Score=79.84 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=26.4
Q ss_pred EEecCeEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 63 EVKGSEVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 63 ~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
...+|++++|+||||||||||++.|++..+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345899999999999999999999998765
No 193
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.87 E-value=4.3e-05 Score=77.85 Aligned_cols=29 Identities=3% Similarity=-0.041 Sum_probs=26.5
Q ss_pred EEEecCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 62 FEVKGSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 62 ~~v~~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
+-+++|+++.|.||+|+|||||+..++..
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999988874
No 194
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.87 E-value=5.8e-06 Score=77.99 Aligned_cols=29 Identities=7% Similarity=0.152 Sum_probs=27.5
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRNDA 93 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~~ 93 (515)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
No 195
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.87 E-value=6.8e-06 Score=82.84 Aligned_cols=123 Identities=11% Similarity=0.113 Sum_probs=79.0
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHH
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTL 133 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l 133 (515)
..-|+++.+-+++|+++.|.|++|+|||||+.-++..... +| ..+.|+.-+ ++..+..
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-------~g---------~~vl~~slE------~s~~~l~ 112 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-------ND---------DVVNLHSLE------MGKKENI 112 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-------TT---------CEEEEEESS------SCHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-------cC---------CeEEEEECC------CCHHHHH
Confidence 4457888777999999999999999999998887742110 01 235555422 3433322
Q ss_pred HHHhhcCCCCCCCchhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChhhHHHH
Q psy10236 134 TFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFL 213 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~~~~~i 213 (515)
. ++......+++.+..+.. ..||.++++|+..|...+.++++++.|+|... ..++
T Consensus 113 ~-------------------R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i 167 (315)
T 3bh0_A 113 K-------------------RLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYI 167 (315)
T ss_dssp H-------------------HHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHH
T ss_pred H-------------------HHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHH
Confidence 1 111111112222222111 23899999999999999999999999998632 4567
Q ss_pred HHHHHHHHhC
Q psy10236 214 VEFLRGWASG 223 (515)
Q Consensus 214 ~~~L~~l~~~ 223 (515)
.+.++++.++
T Consensus 168 ~~~i~~l~~~ 177 (315)
T 3bh0_A 168 WSKTRQTKRK 177 (315)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 7777777654
No 196
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.85 E-value=2.9e-06 Score=77.29 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=31.4
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI 105 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~ 105 (515)
.+|++++|+|+|||||||++++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468999999999999999999999864 6777776544
No 197
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.80 E-value=1.1e-05 Score=75.56 Aligned_cols=30 Identities=7% Similarity=0.029 Sum_probs=27.1
Q ss_pred EEecCeEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 63 EVKGSEVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 63 ~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
++++|++++|+|++||||||+.+.|++.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999999999764
No 198
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.78 E-value=4.1e-05 Score=80.36 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=32.1
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCee
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHS 104 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~ 104 (515)
++.+++++|+||+||||++..|++.+.+..++|.+-+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 578999999999999999999998877666666654443
No 199
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.77 E-value=7.2e-05 Score=75.52 Aligned_cols=34 Identities=6% Similarity=0.064 Sum_probs=28.3
Q ss_pred eeeeE-EEEecCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 57 VQGVS-FEVKGSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 57 L~~vs-~~v~~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
|+.+- +-+++|+++.|.||+|+|||||+..++..
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 44432 57899999999999999999999988764
No 200
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.74 E-value=1.1e-06 Score=89.01 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=35.5
Q ss_pred CCcceeeeeEEEEecCe------EEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 52 KNKCFVQGVSFEVKGSE------VLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 52 ~~~~iL~~vs~~v~~Ge------i~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
+++..|++++..+..++ ++||+||||||||||+++|++++.
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567888888887777 999999999999999999999876
No 201
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.74 E-value=4.8e-05 Score=76.09 Aligned_cols=65 Identities=18% Similarity=0.064 Sum_probs=44.3
Q ss_pred CChHHHHHHHHHHHHH--hCCCEEEEeCCCCCCChhh-HHHHHHHHHHHHhC-CCCCCCCcEEEEEeCCCchHHHhhccE
Q psy10236 175 LTTSELKRLSIACCLM--SHADILLLDCPTVFMDIFD-TFFLVEFLRGWASG-GPAGMAGKMVILTLQPPTYEIFTMISR 250 (515)
Q Consensus 175 LSGGerqRv~IA~aL~--~~p~lLlLDEPtsgLD~~~-~~~i~~~L~~l~~~-g~~~~~~~tiiis~h~~~~~i~~~~Dr 250 (515)
+|+|++ .+++.+. ..|.++++ +.+|... +..+.+.++++++. +. ...+.++.|+ ...+..++|.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~----~~~i~iSA~~-g~~v~~l~~~ 168 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNF----LDIVPISAET-GLNVDTIAAI 168 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCC----SEEEECCTTT-TTTHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCc----CceEEEECCC-CCCHHHHHHH
Confidence 888886 5666666 68999999 7999887 77888888888764 20 1245555554 3345566555
Q ss_pred E
Q psy10236 251 V 251 (515)
Q Consensus 251 v 251 (515)
+
T Consensus 169 i 169 (301)
T 1ega_A 169 V 169 (301)
T ss_dssp H
T ss_pred H
Confidence 4
No 202
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.71 E-value=0.00018 Score=70.98 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCh
Q psy10236 177 TSELKRLSIACCLMSHADILLLDCPTVFMDI 207 (515)
Q Consensus 177 GGerqRv~IA~aL~~~p~lLlLDEPtsgLD~ 207 (515)
++++.|..++.+...+|.+|++||+.+-++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 5667777778888889999999999887664
No 203
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.68 E-value=2.9e-05 Score=69.44 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=24.9
Q ss_pred eeeEEEEecCeEEEEEcCCCchHHHHHHHHh
Q psy10236 58 QGVSFEVKGSEVLAIMSTSALEGKAILDALA 88 (515)
Q Consensus 58 ~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~ 88 (515)
++.++++.+| +.+|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3455566665 99999999999999999987
No 204
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.62 E-value=2.8e-06 Score=80.66 Aligned_cols=54 Identities=13% Similarity=0.002 Sum_probs=41.5
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCCC---CCCeeEEEE--------CCeeCCh----hhhccceEEEecC
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGRN---DAKAFQVIL--------NGHSIPL----NALKRRLVYVRSQ 120 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~~---~~~~G~I~~--------~G~~~~~----~~~~~~i~yv~q~ 120 (515)
+.+++|+|||||||||+.++|++.+ .+++|++.. +|.++.. ..+++.+++++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 5689999999999999999999865 567788876 6766532 2345667777765
No 205
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.61 E-value=1.8e-05 Score=71.58 Aligned_cols=28 Identities=11% Similarity=0.051 Sum_probs=25.0
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRNDA 93 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~~~ 93 (515)
.|++++|+|+|||||||++++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999999997653
No 206
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.58 E-value=5.6e-05 Score=79.75 Aligned_cols=175 Identities=13% Similarity=0.024 Sum_probs=94.6
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHH
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTL 133 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l 133 (515)
..-|+.+.+-+++|+++.|.|++|+|||||+.-++.......| ..+.|+.-+ ++..+..
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g---------------~~vl~~slE------~~~~~l~ 245 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG---------------VGVGIYSLE------MPAAQLT 245 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC---------------CCEEEEESS------SCHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---------------CeEEEEECC------CCHHHHH
Confidence 3457777777999999999999999999999888764321111 123343221 2322221
Q ss_pred HH--HhhcCCCCCCC----chhhHHHHHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHH--hCCCEEEEeCCCCCC
Q psy10236 134 TF--YSHLRRPPKHS----IKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLM--SHADILLLDCPTVFM 205 (515)
Q Consensus 134 ~~--~~~~~~~~~~~----~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~--~~p~lLlLDEPtsgL 205 (515)
.- ......+.... .......++...++.+.-.+..-.....+|..+.+ +.++.+. .+++++++|..+.-.
T Consensus 246 ~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~--~~~~~l~~~~~~~lIvID~l~~~~ 323 (444)
T 2q6t_A 246 LRMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVR--ARARRLVSQNQVGLIIIDYLQLMS 323 (444)
T ss_dssp HHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHH--HHHHHHHHHSCCCEEEEECGGGCB
T ss_pred HHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEcChhhcC
Confidence 10 00000000000 01112223333334332222211122456766653 4555555 489999999998644
Q ss_pred Ch------h----hHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCch------------------HHHhhccEEEEEeC
Q psy10236 206 DI------F----DTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTY------------------EIFTMISRVLLVSG 256 (515)
Q Consensus 206 D~------~----~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~------------------~i~~~~Drv~vL~~ 256 (515)
+. . ....+.+.|+.++++. +.+||+++|.... .+.+.||.|+.|+.
T Consensus 324 ~~~~~~~~~~r~~~i~~i~~~Lk~lAke~-----~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 324 GPGSGKSGENRQQEIAAISRGLKALAREL-----GIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp CC-------CHHHHHHHHHHHHHHHHHHH-----TSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHHHHh-----CCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 32 1 2246677777777652 3678877763210 24667899998853
No 207
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.56 E-value=3.8e-06 Score=85.62 Aligned_cols=65 Identities=9% Similarity=0.024 Sum_probs=50.9
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeC
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI 105 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~ 105 (515)
+++.+++.+.+ +.+.+++++++.+.+|.+++|+|+||+|||||++.|+|.+.+..|+|.+-+.+.
T Consensus 30 ~ie~~~~~~~~--~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 30 LVESRHPRHQA--LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHCCCHHHHH--HHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HhhcCCchhhh--HHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 34555555433 345688999999999999999999999999999999998877777776655543
No 208
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.52 E-value=1.1e-05 Score=77.35 Aligned_cols=68 Identities=9% Similarity=-0.070 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCC-CCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchHHHhhccE
Q psy10236 175 LTTSELKRLSIACCLMSHADILLLDCPTV-FMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISR 250 (515)
Q Consensus 175 LSGGerqRv~IA~aL~~~p~lLlLDEPts-gLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~i~~~~Dr 250 (515)
.+.|...+.. ...+.+-+++++||.-. ++|.......++.+...... .+++++|...+...+.++++.
T Consensus 161 ~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~------~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 161 CTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPE------VRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTT------SEEEEEECSSCCHHHHHHTTS
T ss_pred ECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCC------CeEEEEecCCCHHHHHHHcCC
Confidence 3456555543 33578899999999976 67776654444444333221 267888877776666666553
No 209
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.50 E-value=0.00015 Score=72.17 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=26.2
Q ss_pred EEecCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 63 EVKGSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 63 ~v~~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 46788899999999999999999999865
No 210
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.50 E-value=1.9e-05 Score=80.29 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=25.1
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRNDA 93 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~~ 93 (515)
.++..+.|.||+|+|||||++.+++...+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45778999999999999999999986543
No 211
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.45 E-value=8.9e-05 Score=78.05 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=32.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC------------CCeeEEEECCeeC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRND------------AKAFQVILNGHSI 105 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~~------------~~~G~I~~~G~~~ 105 (515)
.++|+|+||+|||||+|.|+|... +.+|.+.++|+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 699999999999999999999853 5679999999865
No 212
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.44 E-value=2.3e-05 Score=80.16 Aligned_cols=41 Identities=0% Similarity=-0.048 Sum_probs=35.5
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI 105 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~ 105 (515)
+++.+++|+|++|||||||+|.|+|...+.+|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 45789999999999999999999998888888887776654
No 213
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.44 E-value=3e-05 Score=74.39 Aligned_cols=44 Identities=9% Similarity=0.152 Sum_probs=31.7
Q ss_pred eeeeEEEEe---cCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEEC
Q psy10236 57 VQGVSFEVK---GSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILN 101 (515)
Q Consensus 57 L~~vs~~v~---~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~ 101 (515)
|.++|+.+. +|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 677777776 8999999999999999999999998876 5555443
No 214
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.43 E-value=0.00019 Score=66.60 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 68 EVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
..+.|.||+|+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998754
No 215
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.42 E-value=2.5e-05 Score=71.34 Aligned_cols=38 Identities=13% Similarity=-0.047 Sum_probs=30.2
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCCCCee--EEEECCe
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRNDAKAF--QVILNGH 103 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G--~I~~~G~ 103 (515)
++|++++|+|++||||||+.+.|++.+++ .| .+.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECCh
Confidence 47999999999999999999999997654 34 4555543
No 216
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.40 E-value=5.4e-06 Score=85.23 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=36.4
Q ss_pred eEEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCe
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGH 103 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~ 103 (515)
.+.++|+...+ +++.+++++++.| +|+|++|+|||||++.|.|......+.+..++.
T Consensus 17 ~v~~~~l~~~~--~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~ 73 (361)
T 2qag_A 17 YVGFANLPNQV--HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAAE 73 (361)
T ss_dssp ----CCHHHHH--HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----------
T ss_pred eEEeccchHHh--CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCc
Confidence 57888887765 4567889999987 999999999999999999986665555544443
No 217
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.35 E-value=0.00013 Score=68.58 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=25.1
Q ss_pred eeeEEEEecCeEEEEEcCCCchHHHHHHHHhC
Q psy10236 58 QGVSFEVKGSEVLAIMSTSALEGKAILDALAG 89 (515)
Q Consensus 58 ~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G 89 (515)
.+.++.+.+| +.+|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 3455666665 999999999999999999863
No 218
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.33 E-value=0.0043 Score=63.40 Aligned_cols=36 Identities=3% Similarity=-0.085 Sum_probs=29.1
Q ss_pred cceeeeeE--EEEecCeEEEEEcCCCchHHHHHHHHhC
Q psy10236 54 KCFVQGVS--FEVKGSEVLAIMSTSALEGKAILDALAG 89 (515)
Q Consensus 54 ~~iL~~vs--~~v~~Gei~aIiG~nGaGKSTLl~~L~G 89 (515)
..-|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33466553 3588999999999999999999988775
No 219
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.33 E-value=0.00019 Score=65.03 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.5
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999865
No 220
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.31 E-value=0.0023 Score=60.97 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=23.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCCee
Q psy10236 69 VLAIMSTSALEGKAILDALAGRNDAKAF 96 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~~~~~G 96 (515)
.++|+|++|+|||||++.|+|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 4799999999999999999998765544
No 221
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.29 E-value=0.00012 Score=83.05 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=28.4
Q ss_pred EEEecCeEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 62 FEVKGSEVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 62 ~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
+.+++|+.++|.||||+|||||+++|+|...
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3688999999999999999999999999864
No 222
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.29 E-value=2.7e-05 Score=84.32 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=42.0
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCe
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGH 103 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~ 103 (515)
..+++++++++ +|+.++|+||||+|||||+++|++...+..|.|.+.|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 34577888887 89999999999999999999999999888888877663
No 223
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.28 E-value=0.00018 Score=66.25 Aligned_cols=35 Identities=11% Similarity=0.105 Sum_probs=20.7
Q ss_pred ceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 55 CFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 55 ~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998888 5689999999999999999973
No 224
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.27 E-value=0.00042 Score=69.43 Aligned_cols=47 Identities=17% Similarity=0.060 Sum_probs=33.8
Q ss_pred HhCCCEEEEeCCCC-CCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCch
Q psy10236 190 MSHADILLLDCPTV-FMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTY 242 (515)
Q Consensus 190 ~~~p~lLlLDEPts-gLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~ 242 (515)
..++.+|++||+-. .-+...+..+...+..+.+.+ +.+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~------~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLE------KQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTT------CEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCC------CeEEEEecCChH
Confidence 35799999999866 233467888888988887665 566776665543
No 225
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.26 E-value=4.9e-05 Score=71.52 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=35.1
Q ss_pred EEecCeEEEEEcCCCchHHHHHHHHhCCCCCCee--EEEECCe
Q psy10236 63 EVKGSEVLAIMSTSALEGKAILDALAGRNDAKAF--QVILNGH 103 (515)
Q Consensus 63 ~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G--~I~~~G~ 103 (515)
.+++|.+++|+|++||||||+.+.|++.+.|..| .+.++|.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 3568999999999999999999999998877777 7777653
No 226
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.25 E-value=3.7e-05 Score=79.05 Aligned_cols=52 Identities=8% Similarity=0.082 Sum_probs=44.0
Q ss_pred eEEEEeeEEeCCCCCcceee--------------eeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 39 HLQVRGLEVPPSSKNKCFVQ--------------GVSFEVKGSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 39 ~L~v~~l~~~~~~~~~~iL~--------------~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.+.++|+++.|+ ..+..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP-~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHA-NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESC-CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCC-CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 356667777764 4566788 899999999999999999999999999998864
No 227
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.22 E-value=0.0011 Score=66.49 Aligned_cols=34 Identities=9% Similarity=-0.029 Sum_probs=28.4
Q ss_pred eeeeeE-EEEecCeEEEEEcCCCchHHHHHHHHhC
Q psy10236 56 FVQGVS-FEVKGSEVLAIMSTSALEGKAILDALAG 89 (515)
Q Consensus 56 iL~~vs-~~v~~Gei~aIiG~nGaGKSTLl~~L~G 89 (515)
.|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455443 5789999999999999999999988774
No 228
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.16 E-value=0.00027 Score=72.59 Aligned_cols=44 Identities=11% Similarity=0.193 Sum_probs=33.1
Q ss_pred EEEEeeEEeCCCCCcceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHh
Q psy10236 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALA 88 (515)
Q Consensus 40 L~v~~l~~~~~~~~~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~ 88 (515)
..++.|+.. +...+++..+++.+| +.+|.|+|||||||+|.+|.
T Consensus 3 M~l~~L~l~----nFr~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMN----NFKSHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEE----EETTEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEE----ccccccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 445555542 222357788888886 99999999999999999986
No 229
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.12 E-value=8.5e-05 Score=68.94 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=31.3
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
..+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 457889998888885 689999999999999999873
No 230
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.09 E-value=9e-05 Score=77.63 Aligned_cols=46 Identities=9% Similarity=0.000 Sum_probs=41.8
Q ss_pred eeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeC
Q psy10236 58 QGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI 105 (515)
Q Consensus 58 ~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~ 105 (515)
++++++ +|++++++|+||+||||++..|++.+.+..|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 678887 8999999999999999999999999988888998887765
No 231
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.09 E-value=0.00026 Score=66.85 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=23.1
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
++..+.|.||+|+|||||++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999998643
No 232
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.00 E-value=0.0023 Score=62.48 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=23.6
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++.-+.|.||+|+|||||+++|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 466679999999999999999998764
No 233
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.99 E-value=0.00016 Score=66.42 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=29.2
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEE
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRNDAKAFQV 98 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I 98 (515)
.+|.+++|+|++||||||+.+.|++.+.+..+.+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4789999999999999999999999876555554
No 234
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.99 E-value=0.00076 Score=60.28 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999653
No 235
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.98 E-value=0.00029 Score=64.77 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=26.4
Q ss_pred eeEEEEecCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 59 GVSFEVKGSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 59 ~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
No 236
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.94 E-value=0.00034 Score=65.31 Aligned_cols=30 Identities=7% Similarity=0.099 Sum_probs=26.1
Q ss_pred EEecCeEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 63 EVKGSEVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 63 ~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
...+|.+++|+||||||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346889999999999999999999998764
No 237
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.93 E-value=0.00052 Score=62.26 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 238
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.88 E-value=0.00048 Score=71.32 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=33.8
Q ss_pred EEecCeEEEEEcCCCchHHHHHHHHhCC-----------CCCCeeEEEECCe
Q psy10236 63 EVKGSEVLAIMSTSALEGKAILDALAGR-----------NDAKAFQVILNGH 103 (515)
Q Consensus 63 ~v~~Gei~aIiG~nGaGKSTLl~~L~G~-----------~~~~~G~I~~~G~ 103 (515)
.+..|..++|+|+||+|||||+++|+|. ..|..|.+.+.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567788999999999999999999998 5577888888774
No 239
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.85 E-value=7.5e-05 Score=74.59 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=39.9
Q ss_pred ee-eEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeC
Q psy10236 58 QG-VSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI 105 (515)
Q Consensus 58 ~~-vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~ 105 (515)
++ ++++.+ |++++++|+||+||||++..|++.+.+..|+|.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45 777766 999999999999999999999998877777887766654
No 240
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.82 E-value=0.00044 Score=64.24 Aligned_cols=21 Identities=0% Similarity=0.052 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q psy10236 69 VLAIMSTSALEGKAILDALAG 89 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G 89 (515)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
No 241
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.67 E-value=0.0042 Score=59.19 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=41.4
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeC---------CCchHHHhhccEEEEEe
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQ---------PPTYEIFTMISRVLLVS 255 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h---------~~~~~i~~~~Drv~vL~ 255 (515)
+++++++||--. |+. ++++.++.+++.+ ..||++-| .+..++..+||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~g------i~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENG------FVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTT------CEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCC------CeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 554 3556667777655 78999988 66778999999999875
No 242
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.62 E-value=0.00064 Score=62.38 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=28.6
Q ss_pred eEEEEEcCCCchHHHHHHHHhCCCCC---CeeEEEECCee
Q psy10236 68 EVLAIMSTSALEGKAILDALAGRNDA---KAFQVILNGHS 104 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~~~~---~~G~I~~~G~~ 104 (515)
.+++|+|+||||||||++.|.+.+++ .-|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 57999999999999999999987543 24667666543
No 243
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.58 E-value=0.001 Score=60.54 Aligned_cols=25 Identities=8% Similarity=0.058 Sum_probs=22.4
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAG 89 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G 89 (515)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
No 244
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.58 E-value=0.001 Score=60.54 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRNDA 93 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~~~ 93 (515)
-++|+|++|+|||||++.++|...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 3789999999999999999997533
No 245
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.57 E-value=0.033 Score=56.95 Aligned_cols=34 Identities=6% Similarity=-0.046 Sum_probs=27.4
Q ss_pred eeeeeE--EEEecCeEEEEEcCCCchHHHHHHHHhC
Q psy10236 56 FVQGVS--FEVKGSEVLAIMSTSALEGKAILDALAG 89 (515)
Q Consensus 56 iL~~vs--~~v~~Gei~aIiG~nGaGKSTLl~~L~G 89 (515)
-|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 355433 3689999999999999999999877764
No 246
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.57 E-value=0.028 Score=59.85 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=28.7
Q ss_pred ceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhC
Q psy10236 55 CFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAG 89 (515)
Q Consensus 55 ~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G 89 (515)
.-|+.+-.-+.+|+++.|.|++|+|||||+--++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 34666655689999999999999999999876654
No 247
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.55 E-value=0.013 Score=59.71 Aligned_cols=27 Identities=7% Similarity=0.092 Sum_probs=23.2
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.+..-+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 355678999999999999999998754
No 248
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.55 E-value=0.00019 Score=73.21 Aligned_cols=37 Identities=8% Similarity=0.056 Sum_probs=33.2
Q ss_pred ceeeeeEEEEecCeE--EEEEcCCCchHHHHHHHHhCCC
Q psy10236 55 CFVQGVSFEVKGSEV--LAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 55 ~iL~~vs~~v~~Gei--~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.+++++++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467888888889988 9999999999999999999865
No 249
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.52 E-value=0.00021 Score=72.28 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=37.7
Q ss_pred CCcceeeeeEEEEecCeE--EEEEcCCCchHHHHHHHHhCCCCCC
Q psy10236 52 KNKCFVQGVSFEVKGSEV--LAIMSTSALEGKAILDALAGRNDAK 94 (515)
Q Consensus 52 ~~~~iL~~vs~~v~~Gei--~aIiG~nGaGKSTLl~~L~G~~~~~ 94 (515)
+...+++.++..++.|++ +.+.||+|+||||+++++++.+.+.
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 456788899999999999 9999999999999999999976543
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.50 E-value=0.00091 Score=62.08 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
No 251
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.44 E-value=0.00087 Score=64.89 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=31.9
Q ss_pred EEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCee
Q psy10236 63 EVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHS 104 (515)
Q Consensus 63 ~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~ 104 (515)
..+++.++.|+|+|||||||+.+.|+..+. .+.+.+++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence 456788999999999999999999998764 2456666643
No 252
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.43 E-value=0.011 Score=56.68 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=21.9
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.+..-+.|.||+|+|||||.++|+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34455889999999999999999874
No 253
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.42 E-value=0.0024 Score=64.67 Aligned_cols=27 Identities=7% Similarity=0.012 Sum_probs=23.4
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999998754
No 254
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.38 E-value=0.0018 Score=58.44 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998654
No 255
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.36 E-value=0.0015 Score=62.46 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=24.0
Q ss_pred EEecCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 63 EVKGSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 63 ~v~~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.-.+|.+++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999999974
No 256
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.36 E-value=0.0017 Score=58.06 Aligned_cols=23 Identities=4% Similarity=0.044 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 257
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.32 E-value=0.0052 Score=58.24 Aligned_cols=61 Identities=16% Similarity=0.077 Sum_probs=40.3
Q ss_pred HhCCCEEEEeCCCC----CCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCchH---------HHhhccEEEEEe
Q psy10236 190 MSHADILLLDCPTV----FMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYE---------IFTMISRVLLVS 255 (515)
Q Consensus 190 ~~~p~lLlLDEPts----gLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~~~---------i~~~~Drv~vL~ 255 (515)
-.+|+++++|--+. .-|.....++...|+.++++. +.+++++.|..... +...+|-|+.|+
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~-----~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM-----GVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH-----CCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHc-----CCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 45889999996542 225566677888888887652 37888887754221 345789888885
No 258
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.29 E-value=0.011 Score=71.21 Aligned_cols=29 Identities=3% Similarity=0.035 Sum_probs=26.4
Q ss_pred EEecCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 63 EVKGSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 63 ~v~~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999988643
No 259
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.25 E-value=0.0012 Score=63.68 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=24.7
Q ss_pred eeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 56 FVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 56 iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
.++++++...+| +.|.||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 345555555555 88999999999999999998653
No 260
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.20 E-value=0.012 Score=61.89 Aligned_cols=118 Identities=13% Similarity=0.137 Sum_probs=72.5
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECCeeCChhhhccceEEEecCCCCCCCCCHHHHH
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTL 133 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTv~e~l 133 (515)
..-|+.+..-+++|+++.|.|++|+|||||+--++..... + ...+.|+.-+ ++..+..
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~-------~---------g~~vl~fSlE------ms~~ql~ 241 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-------N---------DDVVNLHSLE------MGKKENI 241 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH-------T---------TCEEEEECSS------SCTTHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH-------c---------CCEEEEEECC------CCHHHHH
Confidence 3446666667899999999999999999998877652110 0 1235555322 2222211
Q ss_pred HHHhhcCCCCCCCchhhHHHHHHHHHH-HcCCc--ccccCcccC--CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCChh
Q psy10236 134 TFYSHLRRPPKHSIKVTTSEQMGLLIE-ELGLT--QVLSTRVGR--LTTSELKRLSIACCLMSHADILLLDCPTVFMDIF 208 (515)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~l~-~lgL~--~~~~~~v~~--LSGGerqRv~IA~aL~~~p~lLlLDEPtsgLD~~ 208 (515)
. .++. ..|++ ... -+. |+..+.+|+.-|...+.+.++++.|+|. +
T Consensus 242 ~----------------------R~~~~~~~i~~~~l~---~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~--- 291 (444)
T 3bgw_A 242 K----------------------RLIVTAGSINAQKIK---AARRDFASEDWGKLSMAIGEISNSNINIFDKAG--Q--- 291 (444)
T ss_dssp H----------------------HHHHHHSCCCHHHHH---HTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSS--C---
T ss_pred H----------------------HHHHHHcCCCHHHHh---cccCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--C---
Confidence 1 1111 11221 111 123 8888999999998888888999999874 3
Q ss_pred hHHHHHHHHHHHHhC
Q psy10236 209 DTFFLVEFLRGWASG 223 (515)
Q Consensus 209 ~~~~i~~~L~~l~~~ 223 (515)
+..++...++++.++
T Consensus 292 s~~~i~~~ir~l~~~ 306 (444)
T 3bgw_A 292 SVNYIWSKTRQTKRK 306 (444)
T ss_dssp BHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 344566667776543
No 261
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.17 E-value=0.0026 Score=57.82 Aligned_cols=25 Identities=4% Similarity=0.089 Sum_probs=21.8
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
+|.++.|.|++||||||+.+.|+-.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999864
No 262
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.15 E-value=0.011 Score=51.75 Aligned_cols=27 Identities=4% Similarity=-0.164 Sum_probs=22.5
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
.+.-+.|.||+|+|||++.++|+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 445588999999999999999987543
No 263
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.14 E-value=0.056 Score=54.09 Aligned_cols=27 Identities=7% Similarity=0.028 Sum_probs=23.3
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.+..-+.|.||+|+|||||.++++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678899999999999999999864
No 264
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.11 E-value=0.0027 Score=61.00 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.-+++|.||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999854
No 265
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.11 E-value=0.0025 Score=58.21 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=22.9
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999754
No 266
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.08 E-value=0.0025 Score=61.79 Aligned_cols=24 Identities=8% Similarity=0.008 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 68 EVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999998754
No 267
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.06 E-value=0.0049 Score=56.12 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999766543
No 268
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.06 E-value=0.00092 Score=62.28 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=24.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCCeeEE
Q psy10236 69 VLAIMSTSALEGKAILDALAGRNDAKAFQV 98 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~~~~~G~I 98 (515)
+++|.|++||||||+++.|+..+......+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998765433333
No 269
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.03 E-value=0.0031 Score=56.06 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHH
Q psy10236 69 VLAIMSTSALEGKAILDAL 87 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L 87 (515)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 270
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.02 E-value=0.0015 Score=67.35 Aligned_cols=37 Identities=14% Similarity=0.074 Sum_probs=30.7
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNG 102 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G 102 (515)
.+..++|+|++|||||||++.|++...+..+.|.+-+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 5667899999999999999999987766667776644
No 271
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.95 E-value=0.0038 Score=56.74 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=22.1
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998643
No 272
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.93 E-value=0.0046 Score=63.29 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=29.3
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCC-----------CCCCeeEEEECC
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGR-----------NDAKAFQVILNG 102 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~-----------~~~~~G~I~~~G 102 (515)
|-.++|+|.+|+|||||++.|+|. ..|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 346899999999999999999983 345668887776
No 273
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.92 E-value=0.0035 Score=58.06 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 36899999999999999987543
No 274
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.89 E-value=0.0039 Score=57.23 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999854
No 275
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.86 E-value=0.0047 Score=57.11 Aligned_cols=27 Identities=7% Similarity=-0.008 Sum_probs=23.7
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987544
No 276
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.86 E-value=0.0045 Score=57.98 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=21.8
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAG 89 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G 89 (515)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 277
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.85 E-value=0.0037 Score=56.63 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=22.0
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
++..+.|.|++||||||+.+.|+-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999843
No 278
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.82 E-value=0.0047 Score=55.47 Aligned_cols=22 Identities=0% Similarity=0.058 Sum_probs=20.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhC
Q psy10236 68 EVLAIMSTSALEGKAILDALAG 89 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G 89 (515)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 279
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.82 E-value=0.0047 Score=56.91 Aligned_cols=26 Identities=0% Similarity=-0.118 Sum_probs=23.9
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
+|-+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999876
No 280
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.81 E-value=0.019 Score=70.25 Aligned_cols=34 Identities=3% Similarity=-0.077 Sum_probs=28.0
Q ss_pred eeeeeE--EEEecCeEEEEEcCCCchHHHHHHHHhC
Q psy10236 56 FVQGVS--FEVKGSEVLAIMSTSALEGKAILDALAG 89 (515)
Q Consensus 56 iL~~vs--~~v~~Gei~aIiG~nGaGKSTLl~~L~G 89 (515)
-|+.+- +=+++|+++.|.||+|+|||||...++.
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 355553 3589999999999999999999887765
No 281
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.77 E-value=0.0045 Score=55.89 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998643
No 282
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.74 E-value=0.0044 Score=56.17 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|++|+|||||++.+.+..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999863
No 283
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.73 E-value=0.0051 Score=57.03 Aligned_cols=26 Identities=8% Similarity=-0.020 Sum_probs=23.2
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.+|.+++|.|++||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999864
No 284
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.72 E-value=0.0071 Score=60.68 Aligned_cols=27 Identities=7% Similarity=-0.057 Sum_probs=21.6
Q ss_pred EEEecCeEEEEEcCCCchHHHHHH-HHhC
Q psy10236 62 FEVKGSEVLAIMSTSALEGKAILD-ALAG 89 (515)
Q Consensus 62 ~~v~~Gei~aIiG~nGaGKSTLl~-~L~G 89 (515)
+=+.+| ++.|.||+|+|||||+- +++.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 457789 99999999999999954 4443
No 285
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.71 E-value=0.0043 Score=60.48 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
.++|+|++|+|||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 479999999999999999999753
No 286
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.70 E-value=0.0045 Score=61.19 Aligned_cols=36 Identities=3% Similarity=0.123 Sum_probs=28.0
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEECC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNG 102 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~G 102 (515)
.+|.++.|.|||||||||+.+.|+...+ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3567899999999999999999986543 24456654
No 287
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.69 E-value=0.005 Score=56.27 Aligned_cols=26 Identities=4% Similarity=0.156 Sum_probs=22.9
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.++.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999854
No 288
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.64 E-value=0.0063 Score=55.32 Aligned_cols=25 Identities=4% Similarity=0.034 Sum_probs=21.4
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
++.+++|.|++||||||+.+.|+-.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999753
No 289
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.63 E-value=0.0059 Score=56.08 Aligned_cols=23 Identities=9% Similarity=0.089 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhCC
Q psy10236 68 EVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.+++|.|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999975
No 290
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.60 E-value=0.0058 Score=56.68 Aligned_cols=27 Identities=4% Similarity=0.047 Sum_probs=23.5
Q ss_pred EecCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 64 VKGSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 64 v~~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.++|-+++|.|++||||||+.+.|+-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999854
No 291
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.55 E-value=0.006 Score=55.38 Aligned_cols=23 Identities=4% Similarity=0.050 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
++.|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 292
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.55 E-value=0.13 Score=62.19 Aligned_cols=35 Identities=3% Similarity=-0.089 Sum_probs=28.5
Q ss_pred ceeeeeE--EEEecCeEEEEEcCCCchHHHHHHHHhC
Q psy10236 55 CFVQGVS--FEVKGSEVLAIMSTSALEGKAILDALAG 89 (515)
Q Consensus 55 ~iL~~vs--~~v~~Gei~aIiG~nGaGKSTLl~~L~G 89 (515)
.-|+.+- +=+++|+++.|.||+|+|||||.-.++.
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3466654 3589999999999999999999877764
No 293
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.53 E-value=0.021 Score=49.96 Aligned_cols=26 Identities=0% Similarity=-0.040 Sum_probs=21.9
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.+.-+.|.||+|+|||++.+.|+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhC
Confidence 34558899999999999999998753
No 294
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.52 E-value=0.0041 Score=59.39 Aligned_cols=25 Identities=4% Similarity=-0.027 Sum_probs=19.5
Q ss_pred cCeE-EEEEcCCCchHHHHHHHHhCC
Q psy10236 66 GSEV-LAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 66 ~Gei-~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.|++ +.+.|+.|+||||++-.++..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHH
Confidence 5555 778899999999997666643
No 295
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.43 E-value=0.0077 Score=54.85 Aligned_cols=25 Identities=4% Similarity=0.090 Sum_probs=21.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 68 EVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
.+++|+|++|||||||++.|+..++
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999987653
No 296
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.40 E-value=0.0062 Score=55.76 Aligned_cols=27 Identities=7% Similarity=0.153 Sum_probs=23.4
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998643
No 297
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.38 E-value=0.0058 Score=55.21 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=18.2
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998543
No 298
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.33 E-value=0.018 Score=61.36 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=23.3
Q ss_pred EecCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 64 VKGSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 64 v~~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
+.+..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455568999999999999999998753
No 299
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.32 E-value=0.0085 Score=55.09 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4799999999999999999864
No 300
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.31 E-value=0.0086 Score=53.07 Aligned_cols=23 Identities=9% Similarity=0.338 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37899999999999999999864
No 301
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.31 E-value=0.0092 Score=55.98 Aligned_cols=26 Identities=12% Similarity=0.044 Sum_probs=22.7
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
No 302
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.30 E-value=0.0072 Score=53.15 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=19.7
Q ss_pred EEEEcCCCchHHHHHHHHhCCCC
Q psy10236 70 LAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 70 ~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
++|+|++|+|||||++.+.|...
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEECCCCCCHHHHHHHHcCccc
Confidence 78999999999999999988643
No 303
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.30 E-value=0.0087 Score=52.67 Aligned_cols=22 Identities=5% Similarity=0.152 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999984
No 304
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.30 E-value=0.0097 Score=57.71 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|.+|+|||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999974
No 305
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.0072 Score=54.85 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|++|+|||||++.+++..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 306
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.26 E-value=0.0091 Score=54.50 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
No 307
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.22 E-value=0.0077 Score=52.90 Aligned_cols=23 Identities=4% Similarity=0.174 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
No 308
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.21 E-value=0.0096 Score=54.87 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998753
No 309
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.19 E-value=0.0052 Score=60.58 Aligned_cols=30 Identities=7% Similarity=0.017 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCCCCCCee
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGRNDAKAF 96 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G 96 (515)
...+.|.||+|+||||+.++|++......|
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~ 76 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEE 76 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCc
Confidence 368999999999999999999997655444
No 310
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.18 E-value=0.01 Score=58.25 Aligned_cols=23 Identities=13% Similarity=0.393 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 311
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.17 E-value=0.017 Score=57.76 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=31.5
Q ss_pred cceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 54 ~~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
...+++..+.+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 45688887777 8899999999999999999999875
No 312
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.16 E-value=0.0098 Score=56.13 Aligned_cols=27 Identities=7% Similarity=-0.034 Sum_probs=22.1
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998543
No 313
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.15 E-value=0.0093 Score=53.06 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999854
No 314
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.15 E-value=0.01 Score=52.34 Aligned_cols=22 Identities=9% Similarity=0.290 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q psy10236 70 LAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 70 ~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
++|+|++|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
No 315
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.13 E-value=0.0087 Score=52.30 Aligned_cols=23 Identities=4% Similarity=0.150 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998643
No 316
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.11 E-value=0.0089 Score=52.17 Aligned_cols=23 Identities=9% Similarity=0.267 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999764
No 317
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.10 E-value=0.0082 Score=52.33 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q psy10236 70 LAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 70 ~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
++++|+.|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998753
No 318
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.08 E-value=0.009 Score=52.28 Aligned_cols=23 Identities=4% Similarity=0.057 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++++|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
No 319
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.08 E-value=0.04 Score=51.08 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=40.2
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeC---------CCchHHHhhccEEEEEe
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQ---------PPTYEIFTMISRVLLVS 255 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h---------~~~~~i~~~~Drv~vL~ 255 (515)
+.+++++||--- +|+. .++.++.++..+ ..||++-. .+..++..+||.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~------~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESG------RRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTT------CEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCC------CEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999544 5543 356777777665 78888887 66778999999998775
No 320
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.06 E-value=0.011 Score=55.04 Aligned_cols=22 Identities=5% Similarity=0.116 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 321
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.04 E-value=0.0096 Score=52.39 Aligned_cols=23 Identities=4% Similarity=0.185 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998865
No 322
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.03 E-value=0.0098 Score=53.97 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|++|+|||||++.+.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999863
No 323
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.03 E-value=0.012 Score=53.51 Aligned_cols=23 Identities=9% Similarity=-0.045 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998643
No 324
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.02 E-value=0.013 Score=56.36 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
-++|+|++|+|||||++.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 479999999999999999999754
No 325
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.02 E-value=0.013 Score=54.11 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
+-+++|+|++||||||+.+.|+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 326
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.00 E-value=0.0098 Score=52.40 Aligned_cols=23 Identities=0% Similarity=0.131 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
No 327
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.99 E-value=0.0099 Score=52.20 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q psy10236 70 LAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 70 ~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
++++|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998654
No 328
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.98 E-value=0.013 Score=52.34 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhCC
Q psy10236 68 EVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
++++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999864
No 329
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.97 E-value=0.0093 Score=52.47 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q psy10236 70 LAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 70 ~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999998754
No 330
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.96 E-value=0.011 Score=52.88 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
+++|.|++||||||+.+.|+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 331
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.95 E-value=0.01 Score=52.02 Aligned_cols=21 Identities=10% Similarity=0.219 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q psy10236 70 LAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 70 ~aIiG~nGaGKSTLl~~L~G~ 90 (515)
++|+|++|+|||||++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 332
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.95 E-value=0.01 Score=52.71 Aligned_cols=23 Identities=0% Similarity=0.213 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998653
No 333
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.95 E-value=0.015 Score=51.69 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999998853
No 334
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.94 E-value=0.011 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|++|+|||||++.+.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58899999999999999999864
No 335
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.93 E-value=0.011 Score=52.74 Aligned_cols=23 Identities=9% Similarity=0.244 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 336
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.92 E-value=0.013 Score=53.93 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
..+++|.|++||||||+.+.|+-.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999854
No 337
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.91 E-value=0.014 Score=56.45 Aligned_cols=25 Identities=8% Similarity=0.068 Sum_probs=22.3
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 338
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.90 E-value=0.011 Score=53.14 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q psy10236 70 LAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 70 ~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999854
No 339
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.89 E-value=0.013 Score=54.59 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.++|+|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999754
No 340
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.88 E-value=0.014 Score=51.88 Aligned_cols=22 Identities=5% Similarity=-0.000 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 341
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.86 E-value=0.01 Score=52.72 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999876
No 342
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.86 E-value=0.014 Score=52.82 Aligned_cols=24 Identities=4% Similarity=0.050 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
..+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999753
No 343
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.86 E-value=0.011 Score=55.48 Aligned_cols=26 Identities=8% Similarity=-0.001 Sum_probs=22.0
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998643
No 344
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.84 E-value=0.011 Score=53.52 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchHHHHHHHHhCC
Q psy10236 68 EVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 345
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.81 E-value=0.0086 Score=53.67 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q psy10236 69 VLAIMSTSALEGKAILDALAG 89 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G 89 (515)
-++|+|++|+|||||++.+.+
T Consensus 20 ~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999985
No 346
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.79 E-value=0.012 Score=51.64 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|+.|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 347
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.78 E-value=0.014 Score=51.88 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
No 348
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.76 E-value=0.012 Score=53.18 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|+.|+|||||++.+.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999999864
No 349
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.76 E-value=0.012 Score=52.73 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
No 350
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.71 E-value=0.013 Score=51.67 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999764
No 351
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.71 E-value=0.015 Score=57.72 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.0
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.| .++|+|++|+|||||++.|.|..
T Consensus 7 ~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 7 SG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred CC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 44 58999999999999999999864
No 352
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.69 E-value=0.013 Score=53.20 Aligned_cols=23 Identities=9% Similarity=0.258 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
No 353
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.68 E-value=0.013 Score=52.70 Aligned_cols=23 Identities=9% Similarity=0.146 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 354
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.64 E-value=0.014 Score=57.01 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q psy10236 70 LAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 70 ~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
++|+|++|+|||||+|.|.|..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998864
No 355
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.64 E-value=0.016 Score=55.68 Aligned_cols=24 Identities=4% Similarity=0.015 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 68 EVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998743
No 356
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.64 E-value=0.014 Score=52.63 Aligned_cols=24 Identities=4% Similarity=-0.058 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
-++|+|++|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 378999999999999999998764
No 357
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.63 E-value=0.014 Score=51.16 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=19.1
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q psy10236 70 LAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 70 ~aIiG~nGaGKSTLl~~L~G~ 90 (515)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999763
No 358
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.61 E-value=0.018 Score=55.13 Aligned_cols=25 Identities=4% Similarity=-0.124 Sum_probs=21.9
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
++-+++|.|++||||||+.+.|+-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999753
No 359
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.59 E-value=0.062 Score=50.67 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=42.2
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeC---------CCchHHHhhccEEEEEe
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQ---------PPTYEIFTMISRVLLVS 255 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h---------~~~~~i~~~~Drv~vL~ 255 (515)
+.+++++||--- +|.. .++.|+.++..| ..||++-. .+..++..+||.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~------~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRG------YRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTT------CEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCC------CEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999876 6644 236677776665 78999988 78889999999999885
No 360
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.58 E-value=0.013 Score=51.91 Aligned_cols=22 Identities=5% Similarity=0.167 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|+.|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 361
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.56 E-value=0.018 Score=53.36 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhCC
Q psy10236 68 EVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-+++|.|+.||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999864
No 362
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.54 E-value=0.018 Score=57.37 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|++|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999864
No 363
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.54 E-value=0.015 Score=51.82 Aligned_cols=23 Identities=9% Similarity=0.163 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 364
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.53 E-value=0.015 Score=51.57 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998754
No 365
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.53 E-value=0.015 Score=51.99 Aligned_cols=23 Identities=4% Similarity=0.057 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 37899999999999999998653
No 366
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.51 E-value=0.018 Score=51.85 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 68 EVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
=-++|+|++|+|||||++.+.+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999999754
No 367
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.51 E-value=0.015 Score=52.52 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++++|+.|+|||||++.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 368
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.46 E-value=0.016 Score=51.65 Aligned_cols=23 Identities=4% Similarity=0.109 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999998754
No 369
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.44 E-value=0.017 Score=55.49 Aligned_cols=23 Identities=4% Similarity=0.122 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 370
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.44 E-value=0.012 Score=54.70 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 371
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.44 E-value=0.032 Score=52.11 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=28.1
Q ss_pred eeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 56 FVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 56 iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++..-.. ..|..++|+||+|+|||||...|+...
T Consensus 24 ~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVD-IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 45554444 467899999999999999999998764
No 372
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.39 E-value=0.019 Score=55.59 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
No 373
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.39 E-value=0.023 Score=50.79 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.3
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999998754
No 374
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.37 E-value=0.021 Score=53.84 Aligned_cols=22 Identities=5% Similarity=0.022 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
No 375
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.36 E-value=0.023 Score=55.39 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=22.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhCCCCCCeeE
Q psy10236 68 EVLAIMSTSALEGKAILDALAGRNDAKAFQ 97 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~~~~~~G~ 97 (515)
-.++++|.+|+|||||+|.|.|......|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 378999999999999999999977644443
No 376
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.36 E-value=0.017 Score=52.85 Aligned_cols=23 Identities=9% Similarity=0.319 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 377
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.36 E-value=0.017 Score=52.76 Aligned_cols=23 Identities=4% Similarity=0.057 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998653
No 378
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.35 E-value=0.019 Score=56.20 Aligned_cols=23 Identities=9% Similarity=0.355 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|.+|+|||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999974
No 379
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.35 E-value=0.016 Score=52.00 Aligned_cols=23 Identities=4% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 380
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.35 E-value=0.017 Score=53.59 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|++|+|||||++.+++..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 381
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.34 E-value=0.016 Score=59.39 Aligned_cols=21 Identities=14% Similarity=0.321 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q psy10236 70 LAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 70 ~aIiG~nGaGKSTLl~~L~G~ 90 (515)
++|+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
No 382
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.33 E-value=0.017 Score=52.21 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998754
No 383
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.32 E-value=0.021 Score=52.18 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999864
No 384
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.31 E-value=0.019 Score=56.81 Aligned_cols=23 Identities=13% Similarity=0.471 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|+.|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999975
No 385
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.30 E-value=0.02 Score=52.17 Aligned_cols=22 Identities=5% Similarity=0.326 Sum_probs=19.1
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q psy10236 70 LAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 70 ~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
++|+|++|+|||||++.+.+..
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 386
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.29 E-value=0.017 Score=52.44 Aligned_cols=22 Identities=0% Similarity=0.117 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999874
No 387
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.26 E-value=0.024 Score=50.77 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998653
No 388
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.26 E-value=0.017 Score=52.08 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 389
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.25 E-value=0.021 Score=56.13 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhC
Q psy10236 68 EVLAIMSTSALEGKAILDALAG 89 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G 89 (515)
-+++|.|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
No 390
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.25 E-value=0.018 Score=52.47 Aligned_cols=23 Identities=4% Similarity=0.200 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
No 391
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.22 E-value=0.024 Score=51.25 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
No 392
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.21 E-value=0.023 Score=53.18 Aligned_cols=26 Identities=4% Similarity=0.008 Sum_probs=22.0
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998643
No 393
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.18 E-value=0.017 Score=52.25 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 394
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.18 E-value=0.02 Score=51.21 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999854
No 395
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.15 E-value=0.022 Score=52.26 Aligned_cols=23 Identities=4% Similarity=0.206 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 396
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.15 E-value=0.023 Score=51.33 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999643
No 397
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.14 E-value=0.026 Score=53.45 Aligned_cols=25 Identities=8% Similarity=0.154 Sum_probs=21.7
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
+..++.|+||+||||+|..+.|+-.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4468899999999999999999854
No 398
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.14 E-value=0.023 Score=53.39 Aligned_cols=23 Identities=4% Similarity=0.232 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|++|+|||||++.+.|..
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
No 399
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.11 E-value=0.012 Score=58.22 Aligned_cols=25 Identities=4% Similarity=0.138 Sum_probs=18.8
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
++-+++|.|++||||||+.+.|+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999863
No 400
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.10 E-value=0.021 Score=53.18 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHhCC
Q psy10236 68 EVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-.++|+|++|+|||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 401
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.10 E-value=0.021 Score=51.63 Aligned_cols=22 Identities=5% Similarity=0.135 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
No 402
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.10 E-value=0.021 Score=52.30 Aligned_cols=22 Identities=9% Similarity=0.286 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999863
No 403
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.09 E-value=0.024 Score=51.45 Aligned_cols=23 Identities=4% Similarity=0.099 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 404
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.07 E-value=0.024 Score=52.83 Aligned_cols=22 Identities=0% Similarity=0.048 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999764
No 405
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.04 E-value=0.02 Score=52.51 Aligned_cols=23 Identities=4% Similarity=0.146 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47899999999999999999754
No 406
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.03 E-value=0.027 Score=55.27 Aligned_cols=22 Identities=0% Similarity=0.058 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhC
Q psy10236 68 EVLAIMSTSALEGKAILDALAG 89 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G 89 (515)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 407
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.02 E-value=0.027 Score=51.43 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
-++|+|++|+|||||++.+.|...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999998654
No 408
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.02 E-value=0.021 Score=51.28 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
No 409
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.02 E-value=0.031 Score=52.69 Aligned_cols=28 Identities=14% Similarity=0.023 Sum_probs=24.1
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
.+|-++.|.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999976554
No 410
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.00 E-value=0.034 Score=56.19 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=24.1
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
++.++.|+||.|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998764
No 411
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.99 E-value=0.027 Score=52.10 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
-++|+|+.|+|||||++.+.+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 379999999999999999998543
No 412
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.99 E-value=0.021 Score=51.03 Aligned_cols=21 Identities=10% Similarity=0.154 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q psy10236 69 VLAIMSTSALEGKAILDALAG 89 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G 89 (515)
-++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999984
No 413
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.99 E-value=0.023 Score=51.61 Aligned_cols=23 Identities=9% Similarity=0.222 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 414
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.98 E-value=0.021 Score=51.83 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 415
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.96 E-value=0.023 Score=51.47 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|+.|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 416
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.96 E-value=0.023 Score=50.62 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 417
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.93 E-value=0.021 Score=52.36 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 418
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.93 E-value=0.24 Score=47.16 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=43.0
Q ss_pred hCCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCC---------CchHHHhhccEEEEEe
Q psy10236 191 SHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQP---------PTYEIFTMISRVLLVS 255 (515)
Q Consensus 191 ~~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~---------~~~~i~~~~Drv~vL~ 255 (515)
.+.+++++||----.| +.++++.+++.| ..||++-+. +..++..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~g------i~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAG------KTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTT------CEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCC------CEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987754 556666666655 889999998 8889999999999875
No 419
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.93 E-value=0.023 Score=55.56 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|.+|+|||||++.|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999975
No 420
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.92 E-value=0.024 Score=51.66 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999875
No 421
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.91 E-value=0.024 Score=51.18 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 422
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.90 E-value=0.024 Score=52.14 Aligned_cols=23 Identities=9% Similarity=0.203 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 423
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.89 E-value=0.024 Score=51.47 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
No 424
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.87 E-value=0.024 Score=51.81 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|+.|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 425
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.85 E-value=0.033 Score=52.79 Aligned_cols=26 Identities=8% Similarity=-0.048 Sum_probs=22.0
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.+..+.|+|+.||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998643
No 426
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.84 E-value=0.023 Score=52.58 Aligned_cols=22 Identities=0% Similarity=0.211 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3799999999999999988764
No 427
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.83 E-value=0.029 Score=58.37 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=23.2
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.+.+++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999999999764
No 428
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.81 E-value=0.031 Score=50.99 Aligned_cols=23 Identities=4% Similarity=0.127 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 429
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.80 E-value=0.025 Score=53.97 Aligned_cols=27 Identities=7% Similarity=0.058 Sum_probs=21.4
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.+|-++.|.|++||||||+.+.|+..+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999998654
No 430
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.79 E-value=0.021 Score=50.88 Aligned_cols=22 Identities=5% Similarity=0.163 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++++|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
No 431
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.78 E-value=0.029 Score=52.12 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3789999999999999999974
No 432
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.78 E-value=0.028 Score=50.13 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=22.1
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35567899999999999999998754
No 433
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.76 E-value=0.031 Score=56.57 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=22.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 68 EVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999998654
No 434
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.71 E-value=0.025 Score=52.13 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999754
No 435
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.69 E-value=0.028 Score=51.23 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|++|+|||||++.+.+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999764
No 436
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.68 E-value=0.02 Score=51.20 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=9.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 437
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.63 E-value=0.056 Score=66.15 Aligned_cols=36 Identities=3% Similarity=-0.081 Sum_probs=30.5
Q ss_pred eeeeeEE--EEecCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 56 FVQGVSF--EVKGSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 56 iL~~vs~--~v~~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-|+.+-. =+++|+++.|.|++|+|||||+..++...
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3666664 69999999999999999999999888654
No 438
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.63 E-value=0.035 Score=53.25 Aligned_cols=27 Identities=4% Similarity=0.088 Sum_probs=24.0
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987553
No 439
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.62 E-value=0.029 Score=50.84 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 37899999999999999887643
No 440
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.61 E-value=0.032 Score=53.99 Aligned_cols=23 Identities=9% Similarity=0.355 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|..|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999865
No 441
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.58 E-value=0.027 Score=52.20 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999753
No 442
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.57 E-value=0.04 Score=55.12 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
+.+++|+||+|||||||...|+-...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45899999999999999999997653
No 443
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.53 E-value=0.04 Score=51.01 Aligned_cols=23 Identities=17% Similarity=0.081 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.+.|.||+|+|||||++.++...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998654
No 444
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.51 E-value=0.038 Score=51.76 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
++.|+||+||||+|..+.|+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999854
No 445
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.50 E-value=0.03 Score=51.64 Aligned_cols=23 Identities=4% Similarity=-0.000 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 446
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.47 E-value=0.034 Score=53.98 Aligned_cols=23 Identities=9% Similarity=0.368 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999865
No 447
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.44 E-value=0.019 Score=53.23 Aligned_cols=23 Identities=0% Similarity=0.183 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998654
No 448
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.43 E-value=0.03 Score=51.37 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q psy10236 70 LAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 70 ~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
++|+|++|+|||||++.+.+..
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998753
No 449
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.42 E-value=0.042 Score=52.24 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.6
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
+|.+++|.|+.||||||+.+.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 366899999999999999999997654
No 450
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.41 E-value=0.045 Score=57.69 Aligned_cols=36 Identities=6% Similarity=0.042 Sum_probs=30.0
Q ss_pred ceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 55 CFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 55 ~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.+++.+ ..+-+|+..+|+|++|+|||||++.|+...
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 356666 566789999999999999999999998754
No 451
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.39 E-value=0.04 Score=51.64 Aligned_cols=23 Identities=9% Similarity=0.291 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999753
No 452
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.35 E-value=0.037 Score=51.54 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998754
No 453
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.35 E-value=0.043 Score=51.74 Aligned_cols=27 Identities=7% Similarity=0.046 Sum_probs=23.8
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
+|.++.+.|++||||||+.+.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987553
No 454
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.29 E-value=0.042 Score=55.22 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 68 EVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
.++.|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998653
No 455
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.29 E-value=0.043 Score=51.89 Aligned_cols=29 Identities=7% Similarity=0.014 Sum_probs=25.9
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRNDA 93 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~~ 93 (515)
.+|.++.+.|++||||||+.+.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36889999999999999999999987665
No 456
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.27 E-value=0.049 Score=51.79 Aligned_cols=28 Identities=14% Similarity=0.035 Sum_probs=24.2
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
.+|-++.+.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3678999999999999999999987543
No 457
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.26 E-value=0.09 Score=48.00 Aligned_cols=34 Identities=12% Similarity=-0.081 Sum_probs=26.2
Q ss_pred ceeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhC
Q psy10236 55 CFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAG 89 (515)
Q Consensus 55 ~iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G 89 (515)
..++..- -.-.|.-+.|.|+||+|||||...|..
T Consensus 5 ~~lHas~-v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANF-LVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEE-EEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEE-EEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3344444 445788999999999999999988875
No 458
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.21 E-value=0.035 Score=50.33 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999865
No 459
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.18 E-value=0.033 Score=53.81 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=24.2
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
+++-+++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4677999999999999999999988763
No 460
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.13 E-value=0.028 Score=50.69 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|++|+|||||++.+.+.
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999754
No 461
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.07 E-value=0.02 Score=52.21 Aligned_cols=22 Identities=9% Similarity=0.345 Sum_probs=4.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 462
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.01 E-value=0.14 Score=54.12 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=51.2
Q ss_pred ccCCChHHHHHHHHHH--HHHh---------------CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEE
Q psy10236 172 VGRLTTSELKRLSIAC--CLMS---------------HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVI 234 (515)
Q Consensus 172 v~~LSGGerqRv~IA~--aL~~---------------~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tii 234 (515)
.+.+||||+|-.-+|+ +++. .-.++++||. +-+|.......+++++++- --+|
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lg---------lQli 446 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLD---------MQLL 446 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTT---------CEEE
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcC---------CEEE
Confidence 5669999999744444 3332 1258999999 9999999999999999873 3344
Q ss_pred EEeCCCchHHHhhccEEEEEe
Q psy10236 235 LTLQPPTYEIFTMISRVLLVS 255 (515)
Q Consensus 235 is~h~~~~~i~~~~Drv~vL~ 255 (515)
+++-. .+...+|.++.+-
T Consensus 447 iatP~---~i~p~v~~~~~~~ 464 (483)
T 3euj_A 447 IAAPE---NISPERGTTYKLV 464 (483)
T ss_dssp EEESS---SCCCSSSEEEECC
T ss_pred EECcc---hhhhccCceEEEE
Confidence 54432 4566788888774
No 463
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.93 E-value=0.043 Score=51.25 Aligned_cols=23 Identities=9% Similarity=0.273 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
No 464
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.93 E-value=0.049 Score=50.75 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHhCC
Q psy10236 68 EVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-.++|+|.+|+|||||++.+++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999998864
No 465
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.93 E-value=0.04 Score=50.61 Aligned_cols=23 Identities=4% Similarity=0.209 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|+.|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 37999999999999999998643
No 466
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.88 E-value=0.041 Score=57.86 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.++|+|++|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999884
No 467
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.86 E-value=0.012 Score=59.04 Aligned_cols=42 Identities=17% Similarity=0.028 Sum_probs=30.0
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCCCc
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPT 241 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~~~ 241 (515)
+++++++|| ...|+...+..+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-------~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-------VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-------TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-------CceEEEEeCchh
Confidence 567999999 778888888888887776432 134566666554
No 468
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.86 E-value=0.067 Score=52.58 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.9
Q ss_pred eEEEEEcCCCchHHHHHHHHhCCCCC
Q psy10236 68 EVLAIMSTSALEGKAILDALAGRNDA 93 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~~~~ 93 (515)
-.++++|.+|+|||||+|.|.|....
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCcee
Confidence 36899999999999999999997644
No 469
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=92.73 E-value=0.071 Score=54.69 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=29.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC-----------CCeeEEEECCeeC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRND-----------AKAFQVILNGHSI 105 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~~-----------~~~G~I~~~G~~~ 105 (515)
-+||+|.+-+|||||+|.|+|... |..|.+.++|..+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 489999999999999999999643 2347788877654
No 470
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.68 E-value=0.065 Score=53.50 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998764
No 471
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.67 E-value=0.015 Score=65.64 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=28.6
Q ss_pred eEEEEecCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 60 VSFEVKGSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 60 vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++.+.+++.++|.||||+|||||.++|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 35677899999999999999999999999865
No 472
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.62 E-value=0.046 Score=50.33 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999988753
No 473
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.49 E-value=0.068 Score=48.98 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=35.8
Q ss_pred CCCEEEEeCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCcEEEEEeCC---------CchHHHhhccEEEEEe
Q psy10236 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQP---------PTYEIFTMISRVLLVS 255 (515)
Q Consensus 192 ~p~lLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~~~~~~~tiiis~h~---------~~~~i~~~~Drv~vL~ 255 (515)
+++++++||--. +|+ .+.+.|+.+++.+ ..|+++-+. +...+...+|.|.-|.
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~------~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRG------IDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTT------CEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCC------CCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 543 3556677776665 677776662 2245667799987764
No 474
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.48 E-value=0.052 Score=50.46 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 475
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.45 E-value=0.049 Score=50.10 Aligned_cols=22 Identities=9% Similarity=0.095 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
-++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
No 476
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.32 E-value=0.069 Score=55.20 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 68 EVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
.+++|+||+|||||||.+.|+-...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999986543
No 477
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.30 E-value=0.083 Score=53.02 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=27.6
Q ss_pred eeeeEEEEecCeEEEEEcCCCchHHHHHHHHhC
Q psy10236 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAG 89 (515)
Q Consensus 57 L~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G 89 (515)
|+.+-+-+.+|.++.|.||+|+|||||...++.
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 333336788999999999999999999999875
No 478
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.14 E-value=0.049 Score=57.10 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=23.7
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999987544
No 479
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.14 E-value=0.072 Score=48.63 Aligned_cols=23 Identities=22% Similarity=0.003 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.+.|.||+|+|||||++.++...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998643
No 480
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.10 E-value=0.073 Score=50.80 Aligned_cols=22 Identities=5% Similarity=0.096 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.+||+|++||||||+.+.|+-.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999753
No 481
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.08 E-value=0.075 Score=52.08 Aligned_cols=26 Identities=8% Similarity=0.038 Sum_probs=22.3
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
++.-+.|.||+|+|||||.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999888754
No 482
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=92.06 E-value=0.067 Score=55.29 Aligned_cols=41 Identities=7% Similarity=0.089 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCcccccCcccCCChHHHHHHHHHHHHHhCCCEEEE
Q psy10236 154 QMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198 (515)
Q Consensus 154 ~v~~~l~~lgL~~~~~~~v~~LSGGerqRv~IA~aL~~~p~lLlL 198 (515)
.+.++++.++.... ..++|.++.+++.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED----PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc----cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45667777776543 347899998888777777779999987
No 483
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=91.98 E-value=0.14 Score=53.31 Aligned_cols=23 Identities=9% Similarity=0.294 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|.+++|||||+|.|+|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 484
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.97 E-value=0.052 Score=54.97 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999965
No 485
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.88 E-value=0.062 Score=54.10 Aligned_cols=37 Identities=11% Similarity=0.016 Sum_probs=27.7
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCCCCCCeeEEEEC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILN 101 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~~~~~~G~I~~~ 101 (515)
.+|..+.|.||+|+|||||.+.++.........+.++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 3567899999999999999999998765332333333
No 486
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.87 E-value=0.071 Score=54.08 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=22.5
Q ss_pred cCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 66 GSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 66 ~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
..-+++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998754
No 487
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=91.84 E-value=0.12 Score=52.40 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=25.7
Q ss_pred eeeEEEEecCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 58 QGVSFEVKGSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 58 ~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
..+.++++----++|+|.+++|||||++.|++.
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 345555554445899999999999999999875
No 488
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.61 E-value=0.073 Score=55.54 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.++|+|++|+|||||++.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 489
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.60 E-value=0.044 Score=52.69 Aligned_cols=27 Identities=11% Similarity=0.230 Sum_probs=22.0
Q ss_pred EEEecCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 62 FEVKGSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 62 ~~v~~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
....+| +.|.||+|+|||||+++|++.
T Consensus 41 ~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 41 AKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred CCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 334445 779999999999999999974
No 490
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.90 E-value=0.033 Score=51.01 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q psy10236 69 VLAIMSTSALEGKAILDALAG 89 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G 89 (515)
-++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 489999999999999998875
No 491
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.53 E-value=0.094 Score=50.64 Aligned_cols=26 Identities=8% Similarity=-0.008 Sum_probs=22.1
Q ss_pred ecCeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 65 KGSEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 65 ~~Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
.+..-+.|.||+|+|||||.++|+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34456889999999999999999874
No 492
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.53 E-value=0.12 Score=51.29 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 68 EVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
--++|+|++|+|||||++.+.+..
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999988763
No 493
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.29 E-value=0.059 Score=56.59 Aligned_cols=34 Identities=3% Similarity=0.161 Sum_probs=26.1
Q ss_pred eeEEEEecCeE--EEEEcCCCchHHHHHHHHhCCCC
Q psy10236 59 GVSFEVKGSEV--LAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 59 ~vs~~v~~Gei--~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
.+.-.++.|.+ +.|.||+|+|||||.++|+....
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 33344445554 88999999999999999998653
No 494
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.27 E-value=0.11 Score=51.59 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCchHHHHHHHHhCC
Q psy10236 67 SEVLAIMSTSALEGKAILDALAGR 90 (515)
Q Consensus 67 Gei~aIiG~nGaGKSTLl~~L~G~ 90 (515)
+.-+.|.||+|+|||+|+++|+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999864
No 495
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=91.25 E-value=0.086 Score=57.25 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=25.9
Q ss_pred eeeeeEEEEecCeEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 56 FVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 56 iL~~vs~~v~~Gei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
+|.+++ .+--.++|+|++|+|||||+|.|+|..
T Consensus 30 ~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 30 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 455542 233568999999999999999999975
No 496
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.23 E-value=0.093 Score=51.66 Aligned_cols=24 Identities=8% Similarity=-0.010 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhCCC
Q psy10236 68 EVLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
..+.|.||+|+|||+|.++|+...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467788999999999999999754
No 497
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.16 E-value=0.027 Score=58.98 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=22.8
Q ss_pred eEEEEEcCCCchHHHHHHHHhCCCC
Q psy10236 68 EVLAIMSTSALEGKAILDALAGRND 92 (515)
Q Consensus 68 ei~aIiG~nGaGKSTLl~~L~G~~~ 92 (515)
.+++|+|++|+||||+...|++.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998764
No 498
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.10 E-value=0.12 Score=52.55 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=22.8
Q ss_pred CCChHHHHHHHHHHHH---Hh--CCCEEEEeCCC
Q psy10236 174 RLTTSELKRLSIACCL---MS--HADILLLDCPT 202 (515)
Q Consensus 174 ~LSGGerqRv~IA~aL---~~--~p~lLlLDEPt 202 (515)
.+|+||+||..++++| .. +++++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4899999999999999 77 89999999997
No 499
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=91.09 E-value=0.023 Score=51.94 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q psy10236 69 VLAIMSTSALEGKAILDALAGRN 91 (515)
Q Consensus 69 i~aIiG~nGaGKSTLl~~L~G~~ 91 (515)
-++|+|++|+|||||++.+.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 500
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=91.06 E-value=0.067 Score=49.68 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=18.4
Q ss_pred EEEEcCCCchHHHHHHH-HhCC
Q psy10236 70 LAIMSTSALEGKAILDA-LAGR 90 (515)
Q Consensus 70 ~aIiG~nGaGKSTLl~~-L~G~ 90 (515)
++|+|++|+|||||++. +.|.
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999998 5554
Done!