RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10236
(515 letters)
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 148 bits (376), Expect = 2e-38
Identities = 103/444 (23%), Positives = 187/444 (42%), Gaps = 32/444 (7%)
Query: 51 SKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA---KAFQVILNGHSIPL 107
K ++ VS K E+LA+M +S +++ALA R+ + V+LNG I
Sbjct: 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA 94
Query: 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV 167
++ YV+ P L V + L F +HLR P + K E++ +++ LGL +
Sbjct: 95 KEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMP-RRVTKKEKRERVDEVLQALGLRKC 153
Query: 168 LSTRVGR------LTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWA 221
+TR+G L+ E KRL+ A L++ +L D PT +D F + +V+ L+G A
Sbjct: 154 ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA 213
Query: 222 SGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFAAADYPCPA 281
GK +I T+ P+ E+F + +++L++ GR Y G +P+F+ +PCP
Sbjct: 214 ------QKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPE 267
Query: 282 FKNPSDYYLDLVTLDDLSAEAMLESSQRI----------EQLSELFRRREEPLSDPPLPH 331
NP+D+Y+ ++ + S E ++I +
Sbjct: 268 NYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDS 327
Query: 332 LLIPKIGSASP-LRQVFALFLRQMAYSQPSSLLNWLSQLLIATILSVIIGCIFWDVPSSD 390
+ IG + Q +AL R LL + +L+ + +++IG I+
Sbjct: 328 ENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKV-RLIQTMMTAILIGLIYLGQGL-- 384
Query: 391 SQLLLNDRFGYHYTIMCLASWPLLIWLSMARCHGHDRAAVESDIKDGLYSRAVYIIVMLC 450
+Q + + G + + L + + + + + GLY + Y +
Sbjct: 385 TQKGVQNINGALF--LFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTI 442
Query: 451 CSIPASLIIWLGLVIPAYAMSGLY 474
+P +I+ Y M GL
Sbjct: 443 AELPLFIILPALFTSITYWMIGLR 466
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 126 bits (318), Expect = 2e-33
Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 11/225 (4%)
Query: 43 RGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGK-AILDALAGRNDAKAF---QV 98
GL+ +K + VS V+ +V+AI+ +S GK +LDA++GR + Q+
Sbjct: 9 VGLKAKNWNKYARILNDVSLHVESGQVMAILGSSG-SGKTTLLDAISGRVEGGGTTSGQI 67
Query: 99 ILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLL 158
+ NG + ++ + YVR L P L V +TLT+ + LR P K S + +L
Sbjct: 68 LFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVL 127
Query: 159 IEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLR 218
+ +L LT++ V ++ E +R+SIA L+ +L+LD PT +D F LV L
Sbjct: 128 LRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS 187
Query: 219 GWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263
A ++VILT+ P ++F + R+LL+S G +YSG
Sbjct: 188 QLARR------NRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 105 bits (265), Expect = 2e-26
Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 44/231 (19%)
Query: 36 FFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAK 94
F +L V ++ PS K ++ VS + K E+ AIM S GK+ +L+ALAGR
Sbjct: 5 SFRNLTV-TVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSG-AGKSTLLNALAGRRTGL 62
Query: 95 AF--QVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTS 152
+V++NG + + ++ + YV L P L V +TL F + LR
Sbjct: 63 GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRG----------- 111
Query: 153 EQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFF 212
L+ E KR+SIA L+S+ +L LD PT +D
Sbjct: 112 ----------------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQ 149
Query: 213 LVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263
++ LR A G+ +I ++ P+ EIF + ++LL+S GR +Y G
Sbjct: 150 VMSLLRRLADT------GRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 107 bits (268), Expect = 2e-24
Identities = 113/465 (24%), Positives = 190/465 (40%), Gaps = 71/465 (15%)
Query: 50 SSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAF--QVILNGHSIPL 107
+ + + GV+ E+LA++ S +L+ALAGR F ++ N
Sbjct: 77 QIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK 136
Query: 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV 167
LKR +V L P L V +TL F S LR P + + + I ELGLT+
Sbjct: 137 QILKR-TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESV-ISELGLTKC 194
Query: 168 LSTRVGR-----LTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWAS 222
+T +G ++ E KR+SIA ++ + +L+LD PT +D + LV L A
Sbjct: 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ 254
Query: 223 GGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFAAADYPCPAF 282
GK ++ ++ P+ ++ M VL++S GR ++ GK D + YF + + P+F
Sbjct: 255 ------KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFS-PSF 307
Query: 283 K-NPSDYYLDLVTLDDLSAEAMLESSQRIEQLSELFRRREEPLSDPPL----PHLLIPKI 337
NP+D+ LDL + + Q + RE+P L LL PK+
Sbjct: 308 PMNPADFLLDL--------------ANGVCQTDGV-SEREKPNVKQSLVASYNTLLAPKV 352
Query: 338 GSA--------SPLRQVFALFLRQMAYSQPSSLLNWLSQLLI------------------ 371
+A + R V + ++ S S+ W +Q I
Sbjct: 353 KAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLR 412
Query: 372 ---ATILSVIIGCIFWDVPSSDSQLLLNDRFGYHYTIMCLASWPLLIWLSMARCHGHDRA 428
+++ G ++W D Q DR G + I W + + +RA
Sbjct: 413 VFQVIAAALLAGLMWWHSDFRDVQ----DRLGLLFFISIF--WGVFPSFNSVFVFPQERA 466
Query: 429 AVESDIKDGLYSRAVYIIVMLCCSIPASLIIWLGLVIPAYAMSGL 473
+ G+Y+ + Y + + +P LI+ + Y M+GL
Sbjct: 467 IFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGL 511
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 98.5 bits (246), Expect = 6e-23
Identities = 65/275 (23%), Positives = 117/275 (42%), Gaps = 36/275 (13%)
Query: 57 VQGVSFEVKGSEVLAIM-------STSALEGKAILDALAGRNDAKAFQVILNGHSIPLN- 108
+ GVSFEV+ E+ ++ +T +L LAG + ++++ G+ +
Sbjct: 21 LDGVSFEVEPGEIFGLLGPNGAGKTT-------LLKILAGLLKPTSGEILVLGYDVVKEP 73
Query: 109 -ALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV 167
++RR+ YV + L PEL V + L F++ L K + E L+E GL
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEE----LLELFGLEDK 129
Query: 168 LSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAG 227
+ +V L+ +RLSIA L+ ++L+LD PT +D + E LR A G
Sbjct: 130 ANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEG--- 186
Query: 228 MAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFAAADYPCPAFKNPSD 287
G ++L+ E + RV++++ G+ + G ++ F
Sbjct: 187 --GVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGV---------- 233
Query: 288 YYLDLVTLDDLSAEAMLESSQRIEQLSELFRRREE 322
L+ L+ L+ + E+L+E+ E
Sbjct: 234 IELEPERLELAELLEGLKLVKGEEELAEILEALLE 268
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein.
[Transport and binding proteins, Other].
Length = 1394
Score = 87.5 bits (217), Expect = 5e-18
Identities = 91/372 (24%), Positives = 156/372 (41%), Gaps = 45/372 (12%)
Query: 46 EVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQ---VILNG 102
EV + + + V VK + A+M S +L+ LA R ++NG
Sbjct: 768 EVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNG 827
Query: 103 HSIPLNA-LKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGL---L 158
PL++ +R + YV+ Q P V ++L F ++LR+P V+ SE+M +
Sbjct: 828 R--PLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPK----SVSKSEKMEYVEEV 881
Query: 159 IEELGLTQVLSTRVGR----LTTSELKRLSIACCLMSHADILL-LDCPTVFMDIFDTFFL 213
I+ L + VG L + KRL+I L++ +LL LD PT +D + +
Sbjct: 882 IKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSI 941
Query: 214 VEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVS-GGRTMYSGK----RRDM 268
+ +R A G+ ++ T+ P+ +F R+LL+ GG+T+Y G +
Sbjct: 942 CKLMRKLAD------HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTI 995
Query: 269 LPYFA--AADYPCPAFKNPSDYYLDLV------TLDDLSAEAMLESSQRIEQLSELFRRR 320
+ YF A CP NP+++ L+++ + E SS+ + + R
Sbjct: 996 INYFEKHGAP-KCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEY-QAVKNELDRL 1053
Query: 321 EEPLSDPPLPHLLIPKIGSASPLRQVFALFLR---QMAYSQPSSLLNWLSQLLIATILSV 377
E LS + A+ L F L L Q + P L S+ + ++
Sbjct: 1054 EAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYL---YSKFFLTIFAAL 1110
Query: 378 IIGCIFWDVPSS 389
IG F+ V +S
Sbjct: 1111 FIGFTFFKVGTS 1122
Score = 56.3 bits (136), Expect = 3e-08
Identities = 89/482 (18%), Positives = 156/482 (32%), Gaps = 100/482 (20%)
Query: 84 LDALAGRND----AKAFQVILNGHSIPLNALKRR----LVYVRSQSFLSPELNVAQTLTF 135
L +A D + +G +K+ +VY P L V +TL F
Sbjct: 104 LKTIASNTDGFHIGVEGVITYDGI--TPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDF 161
Query: 136 YSHLR----RPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGR-----LTTSELKRLSIA 186
+ + RP S + + + GL+ +T+VG ++ E KR+SIA
Sbjct: 162 AARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIA 221
Query: 187 CCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFT 246
+ A I D T +D + L+ S + I YE+F
Sbjct: 222 EASLGGAKIQCWDNATRGLDSATALEFIRALK--TSANILDTTPLVAIYQCSQDAYELF- 278
Query: 247 MISRVLLVSGGRTMYSGKRRDMLPYFAAADYPCPAFKNPSDYYLDLVTLDDLSAEAMLES 306
+V+++ G +Y G YF + CP + +D+ L +L + +
Sbjct: 279 --DKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADF---LTSLTSPAERQIKPG 333
Query: 307 SQR-----IEQLSELFRRREEPLS-----DPPLPHLLIPKIGSASPLRQVF--ALFLRQM 354
++ ++ +R E D L S S ++ + + +Q
Sbjct: 334 YEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRC------SESDTKEAYRESHVAKQS 387
Query: 355 AYSQPSS--------------LLNW----------LSQLLIATILSVIIGCIFWDVPSSD 390
++PSS N+ L + I+++I+ +F+++P +
Sbjct: 388 KRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT 447
Query: 391 SQLLLNDRFGYHYT-----------IMCLASWPLLIWLSMARCHGHDRAAVESDIKDGLY 439
S Y L + R VE K LY
Sbjct: 448 SD-------FYSRGGALFFAILFNAFSSLLEIASMY---------EARPIVEKHRKYALY 491
Query: 440 SRAVYIIVMLCCSIPASLIIWLGLVIPAYAMSGLYIQGPDTEAFYIY-VGLVIPAYAMSG 498
+ I + IP +I + I Y M F+ Y + L I AMS
Sbjct: 492 HPSADAIASIISEIPFKIIESVVFNIILYFMVNFR---RTAGRFFFYLLILFICTLAMSH 548
Query: 499 LY 500
L+
Sbjct: 549 LF 550
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 78.3 bits (194), Expect = 1e-16
Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 8/170 (4%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQV 98
LQ+R L K V +S V E+ ++ + GK L L G +
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNG-AGKTTTLKMLTGELRPTSGTA 59
Query: 99 ILNGHSI--PLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMG 156
+NG+SI A ++ L Y L EL V + L FY+ L+ PK IK E++
Sbjct: 60 YINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIK----EEVE 115
Query: 157 LLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
LL+ LGLT + R L+ ++LS+A L+ +LLLD PT +D
Sbjct: 116 LLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLD 165
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 63.4 bits (155), Expect = 1e-11
Identities = 65/222 (29%), Positives = 97/222 (43%), Gaps = 45/222 (20%)
Query: 46 EVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGK-AILDALAGRNDAKAF--QVILNG 102
VP + + +S VK + A+M S GK +LD LAGR A ++++NG
Sbjct: 12 TVPVKGGKRQLLNNISGYVKPGTLTALMGESG-AGKTTLLDVLAGRKTAGVITGEILING 70
Query: 103 HSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEEL 162
+ N +R YV Q SP L V + L F + LR GL +E+
Sbjct: 71 RPLDKN-FQRSTGYVEQQDVHSPNLTVREALRFSALLR---------------GLSVEQ- 113
Query: 163 GLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWAS 222
R KRL+I L + IL LD PT +D + +V FL+ A
Sbjct: 114 --------R---------KRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLA- 155
Query: 223 GGPAGMAGKMVILTLQPPTYEIFTMISRVLLV-SGGRTMYSG 263
+G+ ++ T+ P+ IF R+LL+ GG+T+Y G
Sbjct: 156 -----DSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 61.4 bits (150), Expect = 1e-10
Identities = 58/207 (28%), Positives = 87/207 (42%), Gaps = 30/207 (14%)
Query: 38 PHLQVRGLEVPPSSKNKCF-----VQGVSFEVKGSEVLAIMSTSALEGK-AILDALAGRN 91
P L+VRGL +K F V VS EV+ E++ ++ + GK + + + G
Sbjct: 3 PLLEVRGL-------SKRFGGLTAVNDVSLEVRPGEIVGLIGPNG-AGKTTLFNLITGFY 54
Query: 92 DAKAFQVILNGHSI-PLNALKR-RLVYVRSQSF----LSPEL----NVA----QTLTFYS 137
+ VI G I L + RL R+ F L P L NVA L
Sbjct: 55 KPSSGTVIFRGRDITGLPPHRIARLGIART--FQITRLFPGLTVLENVAVGAHARLGLSG 112
Query: 138 HLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197
L RP + E+ L+E +GL ++ G L+ + +RL IA L + +LL
Sbjct: 113 LLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLL 172
Query: 198 LDCPTVFMDIFDTFFLVEFLRGWASGG 224
LD P ++ +T L E +R G
Sbjct: 173 LDEPAAGLNPEETEELAELIRELRDRG 199
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 64.1 bits (156), Expect = 1e-10
Identities = 110/445 (24%), Positives = 187/445 (42%), Gaps = 78/445 (17%)
Query: 71 AIMSTSALEGKAILDALAGRNDAKAFQ--VILNGHSIPLNALKRRLVYVRSQSFLSPELN 128
A+M S ++D LAGR + + ++G R Y SP++
Sbjct: 910 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVT 969
Query: 129 VAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTR--------VGRLTTSEL 180
V ++L + + LR P +V+ E+M + E + L ++ + + V L+T +
Sbjct: 970 VRESLIYSAFLRLP----KEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025
Query: 181 KRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPP 240
KRL+IA L+++ I+ +D PT +D ++ +R G+ V+ T+ P
Sbjct: 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTIHQP 1079
Query: 241 TYEIFTMISRVLLVS-GGRTMYSG----KRRDMLPYFAAADYP-CPAFK---NPSDYYLD 291
+ +IF +LL+ GG+ +YSG ++ YF A P P K NP+ + L+
Sbjct: 1080 SIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEA--IPGVPKIKEKYNPATWMLE 1137
Query: 292 LVTLDDLSAEAMLESS-QRIEQLSELFRRRE---EPLSDPPLPHLLIPKIGSASPLRQVF 347
+ + L+AE L + S L++R + + LS PP AS L F
Sbjct: 1138 VSS---LAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPP---------PGASDL--YF 1183
Query: 348 ALFLRQMAYSQPSSLL--NW----------LSQLLIATILSVIIGCIFWDVPSSDSQLLL 395
A Q + Q S L W L + ++++G IFW V + S
Sbjct: 1184 ATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSN--A 1241
Query: 396 NDRFGYHYTIMCLASWPLLIWLSMARCHG-HDRAAVESDI-----KDGLYSRAVYIIVML 449
ND T++ A + ++++ + C AVE + G+YS Y I +
Sbjct: 1242 ND-----LTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQV 1296
Query: 450 CCSIPASLI--IWLGLVIPAYAMSG 472
C IP LI + L++ YAM
Sbjct: 1297 VCEIPYVLIQTTYYTLIV--YAMVA 1319
Score = 41.4 bits (97), Expect = 0.001
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 233 VILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFAAADYPCPAFKNPSDYYLDL 292
V+++L P E F + ++L+S G+ +Y G R +L +F + + CP K +D+ ++
Sbjct: 390 VLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEV 449
Query: 293 VTLDD 297
+ D
Sbjct: 450 TSKKD 454
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 61.2 bits (149), Expect = 1e-10
Identities = 55/228 (24%), Positives = 104/228 (45%), Gaps = 23/228 (10%)
Query: 56 FVQGVSFEVKGSEVLAIMSTSALEGKAI-LDALAGRNDAKAFQVILNGHSI-PLNALKRR 113
++ VS EV+ + I+ + GK++ L+ +AG + +++LNG I L KR
Sbjct: 14 KLKNVSLEVERGDYFVILGPTG-SGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRD 72
Query: 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVG 173
+ YV L P + V + + + R+ K I+ ++ + E LG+ +L+ +
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIE----RKVLEIAEMLGIDHLLNRKPE 128
Query: 174 RLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMV 233
L+ E +R++IA L+ + ILLLD P +D+ L E L+ K
Sbjct: 129 TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKI---------RKEF 179
Query: 234 ILTLQPPTY---EIFTMISRVLLVSGGRTMYSGKRRDML----PYFAA 274
+T+ T+ E + + +V ++ G+ + GK ++ F A
Sbjct: 180 GVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVA 227
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 60.4 bits (147), Expect = 3e-10
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 153 EQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFF 212
L+E LG + G L+ E +R+ IA L+ ++L+LD P +D+
Sbjct: 150 AAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQ 209
Query: 213 LVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264
L+ L A+ A ++ +T EI + LL+ G + GK
Sbjct: 210 LLNRLEELAASPG---APALLFVTHHAE--EIPPCFTHRLLLKEGEVVAQGK 256
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 59.6 bits (145), Expect = 6e-10
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 27/185 (14%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGK-AILDALAGRNDAKAFQV 98
++V+ L ++ ++ V+ E+ E++AI+ S GK +L +L G D + ++
Sbjct: 4 IEVKNLSKTYPGGHQA-LKDVNLEINQGEMVAIIGPSG-AGKSTLLRSLNGLVDPTSGEI 61
Query: 99 ILNGHSI------PLNALKRRLVYVRSQSF-LSPELNV---------AQTLTFYSHLRRP 142
+ NG I L L+R + + Q F L P L+V T T+ S
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMI-FQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120
Query: 143 PKHSIKVTTSEQMGL-LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCP 201
K + L +E +G+ R L+ + +R++IA L+ I+L D P
Sbjct: 121 SKED------KAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEP 174
Query: 202 TVFMD 206
+D
Sbjct: 175 VASLD 179
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 57.9 bits (141), Expect = 6e-09
Identities = 56/255 (21%), Positives = 99/255 (38%), Gaps = 24/255 (9%)
Query: 26 APSFQSGRPEFFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILD 85
P G L+V L V V+ VSFEV+ E++ I + +++
Sbjct: 248 KPPSTPGEVV----LEVEDLSVKDRRGVTA-VKDVSFEVRAGEIVGIAGVAGNGQSELVE 302
Query: 86 ALAGRNDAKAFQVILNGHSIP--LNALKRR---LVYV---RSQSFLSPELNVAQTLTFYS 137
A++G + +++LNG + L+ +RR L YV R L +L++A+ L
Sbjct: 303 AISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGR 362
Query: 138 HLRRPPKHSIKVTTSEQMGL---LIEELGL-TQVLSTRVGRLTTSELKRLSIACCLMSHA 193
H ++P + LIEE + L+ ++L +A L
Sbjct: 363 HDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRP 422
Query: 194 DILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLL 253
D+L+ PT +D+ F+ E L G A +L + EI + R+ +
Sbjct: 423 DLLIAAQPTRGLDVGAIEFIHERLLELRDAGKA-------VLLISEDLDEILELSDRIAV 475
Query: 254 VSGGRTMYSGKRRDM 268
+ GR + +
Sbjct: 476 IYEGRIVGIVPPEEA 490
Score = 40.6 bits (96), Expect = 0.002
Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 25/158 (15%)
Query: 59 GVSFEVKGSEVLAIM-------ST--SALEGKAILDALAGRNDAKAFQVILNGHSIPLN- 108
VS VK E+ A++ ST L G + +G ++ ++G + +
Sbjct: 22 DVSLSVKKGEIHALLGENGAGKSTLMKILFG--LYQPDSG-------EIRVDGKEVRIKS 72
Query: 109 ---ALKRRLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGL 164
A++ + V Q F L P L VA+ + + + ++ L E GL
Sbjct: 73 PRDAIRLGIGMV-HQHFMLVPTLTVAENIILGLEPSKGGLIDRR-QARARIKELSERYGL 130
Query: 165 TQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPT 202
+V L+ E +R+ I L A +L+LD PT
Sbjct: 131 PVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPT 168
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 55.8 bits (135), Expect = 6e-09
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 21/213 (9%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNG---HSIPLNALKRR 113
V GVSF VK EV ++ + L LAG + A ++G P A +RR
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEA-RRR 79
Query: 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVG 173
L +V + L L + L +++ L + E L + LG+ ++L RVG
Sbjct: 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEE----LADRLGMEELLDRRVG 135
Query: 174 RLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMV 233
+T ++++IA L+ +LLLD PT +D+ T L EF+R + GK +
Sbjct: 136 GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA------LGKCI 189
Query: 234 ILT---LQPPTYEIFTMISRVLLVSGGRTMYSG 263
+ + +Q E+ + RV+++ GR +Y G
Sbjct: 190 LFSTHIMQ----EVERLCDRVVVLHRGRVVYEG 218
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 56.3 bits (136), Expect = 7e-09
Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 6/164 (3%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNA--LKRRL 114
V+ VSFE + E+ ++ + +L +A + +V ++G + ++R++
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77
Query: 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGR 174
+ + L L + L +++ L + IK +E L + L L + L RVG
Sbjct: 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAE----LSKRLQLLEYLDRRVGE 133
Query: 175 LTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLR 218
+T ++++IA L+ IL+LD PT +DI +F++
Sbjct: 134 FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIK 177
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 55.6 bits (135), Expect = 1e-08
Identities = 59/247 (23%), Positives = 95/247 (38%), Gaps = 35/247 (14%)
Query: 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIM-------STSALEGKAILDALAGR 90
L+V L K + +SF + E+ I+ ST +L LAG
Sbjct: 1 MMLEVENLSF--GYGGKPILDDLSFSIPKGEITGILGPNGSGKST-------LLKCLAGL 51
Query: 91 NDAKAFQVILNG---HSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSI 147
K+ +V+L+G S+ L ++L YV L V + + R P +
Sbjct: 52 LKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLG----RYPHLGL 107
Query: 148 KVTTS----EQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTV 203
S E + +E LGL + V L+ E +R+ IA L ILLLD PT
Sbjct: 108 FGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTS 167
Query: 204 FMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMIS-RVLLVSGGRTMYS 262
+DI ++E LR G V++ L + ++L+ G+ +
Sbjct: 168 HLDIAHQIEVLELLRDL-----NREKGLTVVMVLHDLNLAA--RYADHLILLKDGKIVAQ 220
Query: 263 GKRRDML 269
G ++L
Sbjct: 221 GTPEEVL 227
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 55.4 bits (134), Expect = 1e-08
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR-NDAKAFQVILNGHSI---PLNALKR 112
+ VSF V+ +A++ + GK+ L +L R A+ Q+ + GH + P AL
Sbjct: 17 LDDVSFTVRPGRFVALLGPNG-AGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAAL-A 74
Query: 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSI-KVTTSEQMGLLIEELGLTQVLSTR 171
RL V Q L +L+V Q L +++ L H + + ++ L+ LGL + +
Sbjct: 75 RLGVVFQQPTLDLDLSVRQNLRYHAAL-----HGLSRAEARARIAELLARLGLAERADDK 129
Query: 172 VGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRG 219
V L +R+ IA L+ +LLLD PTV +D + +R
Sbjct: 130 VRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRA 177
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 52.7 bits (127), Expect = 1e-08
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 83 ILDALAGRNDAKAFQVILNGHSI----PLNALKRRLVYVRSQSFLSPELNVAQTLTFYSH 138
+L + G + ++L+G L++R+ V L PEL V + L F
Sbjct: 3 LLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG-- 60
Query: 139 LRRPPKHSIKVTTSEQMGLLIEELGLTQVLST-RVGRLTTSELKRLSIACCLMSHADILL 197
K + + +E +GL L VG L+ + +R++IA L+ +LL
Sbjct: 61 --LRDKEAD-----ARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLL 113
Query: 198 LDCPT 202
LD PT
Sbjct: 114 LDEPT 118
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 55.0 bits (133), Expect = 1e-08
Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 24/213 (11%)
Query: 60 VSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNG-------HSIPLNALKR 112
+ F++ EV I S +L +AG ++LNG I L +R
Sbjct: 17 IDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75
Query: 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRV 172
++ V Q L P LNV + L F L+R +++ E + LL GL +L+
Sbjct: 76 KIGLVFQQYALFPHLNVRENLAF--GLKRKRNREDRISVDELLDLL----GLDHLLNRYP 129
Query: 173 GRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWAS--GGPAGMAG 230
+L+ E +R+++A L + ++LLLD P +D L+ L+ P
Sbjct: 130 AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIP----- 184
Query: 231 KMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263
VI + E + R++++ GR Y G
Sbjct: 185 --VIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 55.9 bits (135), Expect = 2e-08
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 19/217 (8%)
Query: 60 VSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNG-------HSIPLNALKR 112
F + G V AI S ++ +AG +++LNG I L KR
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRV 172
R+ YV ++ L P L+V L + RP + I +IE LG+ +L
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFER------VIELLGIGHLLGRLP 129
Query: 173 GRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKM 232
GRL+ E +R++I L+S +LL+D P +D + ++ +L + +
Sbjct: 130 GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHA------EFGI 183
Query: 233 VILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
IL + E+ + RV+++ GR +G ++
Sbjct: 184 PILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 54.0 bits (131), Expect = 4e-08
Identities = 50/209 (23%), Positives = 83/209 (39%), Gaps = 40/209 (19%)
Query: 40 LQVRGLEVPPSSKNKCF-----VQGVSFEVKGSEVLAIM-------STSALEGKAILDAL 87
L+VRGL K F + VSF V+ E+ ++ +T + + +
Sbjct: 1 LEVRGLT-------KRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTT-------LFNLI 46
Query: 88 AGRNDAKAFQVILNGHSI---PLNALKRRLVYVRS----QSF--LSPELNV---AQTLTF 135
+G + V+ +G I P + + R + R+ + F L+ NV AQ T
Sbjct: 47 SGFLRPTSGSVLFDGEDITGLPPHEIARLGI-GRTFQIPRLFPELTVLENVMVAAQARTG 105
Query: 136 YSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADI 195
L + + LL E +GL + G L+ + +RL IA L + +
Sbjct: 106 SGLLLARARREEREARERAEELL-ERVGLADLADRPAGELSYGQQRRLEIARALATDPKL 164
Query: 196 LLLDCPTVFMDIFDTFFLVEFLRGWASGG 224
LLLD P ++ +T L E +R G
Sbjct: 165 LLLDEPAAGLNPEETEELAELIRELRERG 193
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 53.6 bits (130), Expect = 4e-08
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 22/169 (13%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSIPLNALKRRLV 115
++GVS ++ E +AI+ S GK+ +L+ L G + + +V ++G I + K
Sbjct: 20 LKGVSLSIEKGEFVAIVGPSG-SGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAA 78
Query: 116 YVRS------QSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVL 168
+ R QSF L P+L + + L PK + E L+E +GL L
Sbjct: 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEE----LLERVGLGDRL 134
Query: 169 STRVGRLTTSELKRLSIACCLMSHADILLLDCPT---------VFMDIF 208
+ L+ + +R++IA L + I+L D PT M++
Sbjct: 135 NHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELL 183
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 53.8 bits (130), Expect = 8e-08
Identities = 37/160 (23%), Positives = 80/160 (50%), Gaps = 13/160 (8%)
Query: 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSIP-LNA 109
+ ++ V+ +++ E + ++ S GK+ +L +AG + + +++++G + L
Sbjct: 14 GSFEVLKDVNLDIEDGEFVVLLGPSG-CGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP 72
Query: 110 LKRRLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSI--KVTTSEQMGLLIEELGLTQ 166
KR + V Q++ L P + V + + F LR PK I +V ++ LGL
Sbjct: 73 EKRGIAMV-FQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKL------LGLEH 125
Query: 167 VLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
+L+ + +L+ + +R+++A L+ + LLD P +D
Sbjct: 126 LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD 165
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 51.4 bits (124), Expect = 2e-07
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 10/156 (6%)
Query: 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSIPLNALK 111
+ G+SF + E L + + GK +L +AG A + L+G I +
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNG-SGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVA 72
Query: 112 RRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTR 171
Y+ ++ + P L VA+ L F++ + I +E +GL +
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAA--------LEAVGLAPLAHLP 124
Query: 172 VGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
G L+ + +R+++A L+S+ I +LD PT +D
Sbjct: 125 FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 50.9 bits (123), Expect = 2e-07
Identities = 57/234 (24%), Positives = 96/234 (41%), Gaps = 68/234 (29%)
Query: 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEG---KAILDALAGRNDAK 94
P L+VRGL V + V+ VSFEV+ E++ I + L G + +AL G
Sbjct: 3 PVLEVRGLSVKGA------VRDVSFEVRAGEIVGI---AGLVGNGQTELAEALFGLRPPA 53
Query: 95 AFQVILNGHSI----PLNALKRRLVYV---RSQSFLSPELNVAQTLTFYSHLRRPPKHSI 147
+ ++ L+G + P +A++ + YV R + L +L+VA+ + S L S
Sbjct: 54 SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLL------S- 106
Query: 148 KVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
G Q +++ +A L +L+LD PT +D+
Sbjct: 107 ---------------GGNQ--------------QKVVLARWLARDPRVLILDEPTRGVDV 137
Query: 208 FDTFFLVEFLRGWASGGPAGMAGKMVIL---TLQPPTYEIFTMISRVLLVSGGR 258
+ +R A AGK V+L L E+ + R+L++ GR
Sbjct: 138 GAKAEIYRLIRELAD------AGKAVLLISSELD----ELLGLCDRILVMYEGR 181
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 49.9 bits (120), Expect = 3e-07
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 175 LTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVI 234
L+ + +R+++A L+ + D+LLLD PT +D L+E LR A G ++I
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRT-----VII 135
Query: 235 LTLQPPTYEIFTMISRVLLVSGGR 258
+T P E+ RV+++ G+
Sbjct: 136 VTHDPELAELAA--DRVIVLKDGK 157
Score = 32.2 bits (74), Expect = 0.31
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 50 SSKNKCFVQGVSFEVKGSEVLAIM-STSALEGK-AILDALAGRNDAKAFQVILNGHSI-- 105
+ + VS +K E++A++ + GK +L A+AG + +++++G I
Sbjct: 8 RYGGRTALDNVSLTLKAGEIVALVGPNGS--GKSTLLRAIAGLLKPTSGEILIDGKDIAK 65
Query: 106 -PLNALKRRLVYVRSQS 121
PL L+RR+ YV S
Sbjct: 66 LPLEELRRRIGYVPQLS 82
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 51.6 bits (124), Expect = 4e-07
Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 31/219 (14%)
Query: 57 VQGVSFEV-KGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSIPLNALKRRL 114
VQ +SFE+ KG V + + A GK+ L L G + +V +NG P +RR
Sbjct: 40 VQDISFEIPKGEIVGFLGANGA--GKSTTLKMLTGLLLPTSGKVRVNGK-DPF---RRRE 93
Query: 115 VYVRSQSF-------LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV 167
Y+RS L +L +L + P E++ L E L L
Sbjct: 94 EYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFA----ERLDFLTEILDLEGF 149
Query: 168 LSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAG 227
L V +L+ + R +A L+ +L LD PTV +D+ + EFL+ +
Sbjct: 150 LKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNE----- 204
Query: 228 MAGKMVILTLQPPTY---EIFTMISRVLLVSGGRTMYSG 263
V+LT T+ +I T+ RVLL+ G+ ++ G
Sbjct: 205 ERQATVLLT----THIFDDIATLCDRVLLIDQGQLVFDG 239
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 50.6 bits (122), Expect = 5e-07
Identities = 48/252 (19%), Positives = 95/252 (37%), Gaps = 53/252 (21%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA---KAF 96
L+ L + V GVS VK E++ L G N A F
Sbjct: 1 LRAENLS--KRYGKRKVVNGVSLSVKQGEIVG---------------LLGPNGAGKTTTF 43
Query: 97 ------------QVILNGHSIPLNALKRR----LVYVRSQSFLSPELNVAQTLTFYSHLR 140
+++L+G I + +R + Y+ ++ + +L V + + +R
Sbjct: 44 YMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR 103
Query: 141 RPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDC 200
K + E++ L+EE +T + ++ L+ E +R+ IA L ++ LLLD
Sbjct: 104 GLSKKERE----EKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159
Query: 201 PTVFMD---IFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGG 257
P +D + D +++ L+ G +L E ++ R ++ G
Sbjct: 160 PFAGVDPIAVQDIQKIIKILKDRGIG----------VLITDHNVRETLSITDRAYIIYEG 209
Query: 258 RTMYSGKRRDML 269
+ + G ++
Sbjct: 210 KVLAEGTPEEIA 221
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 51.5 bits (124), Expect = 6e-07
Identities = 55/218 (25%), Positives = 89/218 (40%), Gaps = 25/218 (11%)
Query: 7 THLHDR----AASALSHSHLDGGAPSFQSGRPEF---FPHLQVRGLEVPPSSKNKCFVQG 59
H R AA+ + LD P P L+ G+ V + ++
Sbjct: 282 AQYHARADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGRRPA-LRP 340
Query: 60 VSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSIP---LNALKRRLV 115
VSF V E +A++ S GK+ +L+ L G D + +NG + ++ + ++
Sbjct: 341 VSFTVPPGERVALVGPSG-AGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399
Query: 116 YVRSQSFLSPELNVAQTLTFYSHLRRP--PKHSIKVTTSEQMGLLIEELGLTQVLSTRVG 173
+V FL A T+ L RP I+ E+ GL L Q L T +G
Sbjct: 400 WVPQHPFL-----FAGTIAENIRLARPDASDAEIR-EALERAGLDEFVAALPQGLDTPIG 453
Query: 174 ----RLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
L+ + +RL++A + A +LLLD PT +D
Sbjct: 454 EGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDA 491
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 49.2 bits (118), Expect = 1e-06
Identities = 33/156 (21%), Positives = 71/156 (45%), Gaps = 7/156 (4%)
Query: 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSIPLNAL 110
+K + ++ ++ ++ AI+ S GK+ +L+ + + QV LNG P
Sbjct: 9 GDKVILDDLNLTIEKGKMYAIIGESG-SGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNS 67
Query: 111 KRRLVYVRSQ-SFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLI---EELGLTQ 166
K+ + R + +L + + T +L K+ K++ E+ E++GL
Sbjct: 68 KKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK-KLSKKEKREKKKEALEKVGLNL 126
Query: 167 VLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPT 202
L ++ L+ E +R+++A ++ ++L D PT
Sbjct: 127 KLKQKIYELSGGEQQRVALARAILKPPPLILADEPT 162
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 48.9 bits (117), Expect = 2e-06
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 15/211 (7%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NALKRR 113
++G+SF ++ E++ + + L L+G + +V + G +P RR
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL-VPWKRRKKFLRR 95
Query: 114 LVYVRSQ-SFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRV 172
+ V Q + L +L V + + + P K E L E L L ++L T V
Sbjct: 96 IGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDE----LSELLDLEELLDTPV 151
Query: 173 GRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKM 232
+L+ + R IA L+ +IL LD PT+ +D+ + FL+ + G
Sbjct: 152 RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR-----ERGTT 206
Query: 233 VILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263
V+LT +I + RVL++ GR +Y G
Sbjct: 207 VLLTSH-YMKDIEALARRVLVIDKGRLLYDG 236
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 49.1 bits (118), Expect = 2e-06
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 27/181 (14%)
Query: 40 LQVRGLEVP-PSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQ 97
++V L P+ K ++ VS + E +A++ S GK+ +L L G + +
Sbjct: 1 IEVENLSKTYPNGKKA--LKDVSLSINPGEFVALIGPSG-AGKSTLLRCLNGLVEPTSGS 57
Query: 98 VILNGHSIP------LNALKRRLVYVRSQSF-LSPELNV---------AQTLTFYSHLRR 141
V+++G I L L+R++ + Q F L L+V + T+ S
Sbjct: 58 VLIDGTDINKLKGKALRQLRRQIGMI-FQQFNLIERLSVLENVLSGRLGRRSTWRSLFGL 116
Query: 142 PPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCP 201
PK + + +E +GL R +L+ + +R++IA LM ++L D P
Sbjct: 117 FPKEEKQRALA-----ALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEP 171
Query: 202 T 202
Sbjct: 172 V 172
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 49.6 bits (119), Expect = 2e-06
Identities = 49/241 (20%), Positives = 93/241 (38%), Gaps = 29/241 (12%)
Query: 44 GLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGH 103
LE+ + F +F + + A+ S ++++ +AG ++ LNG
Sbjct: 1 MLELNFRQRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGR 60
Query: 104 -------SIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMG 156
I L KRR+ YV + L P V L + + + Q
Sbjct: 61 VLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRY----------GMWKSMRAQFD 110
Query: 157 LLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEF 216
L+ LG+ +L G L+ E +R++I L++ ++LL+D P +D+ ++ +
Sbjct: 111 QLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPY 170
Query: 217 LRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK------RRDMLP 270
L + IL + E+ + RV+++ G+ SG D P
Sbjct: 171 LERLRD------EINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFPP 224
Query: 271 Y 271
+
Sbjct: 225 W 225
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 50.0 bits (120), Expect = 2e-06
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
++E LGL VL V L+ EL+R++IA L+ AD+ D P+ ++DI
Sbjct: 197 VVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDI 246
Score = 44.2 bits (105), Expect = 1e-04
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
+++ L L +L V L+ EL+R++IA L AD+ LLD P+ ++D+
Sbjct: 439 IVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDV 488
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 47.0 bits (113), Expect = 3e-06
Identities = 44/231 (19%), Positives = 81/231 (35%), Gaps = 71/231 (30%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIM-------STSALEGKAILDALAGRND 92
++VR L K + +S V+ E+ ++ +T ++ + G
Sbjct: 1 IEVRNLSK--RYGKKTALDDISLTVEKGEIYGLLGPNGAGKTT-------LIKIILGLLK 51
Query: 93 AKAFQVILNGHSIPLN--ALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVT 150
+ ++ + G I +KRR+ Y+ + L L V + L S
Sbjct: 52 PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK-LS------------- 97
Query: 151 TSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDT 210
G+ Q RL++A L+ ++L+LD PT +D
Sbjct: 98 -----------GGMKQ---------------RLALAQALLHDPELLILDEPTSGLDPESR 131
Query: 211 FFLVEFLRGWASGGPAGMAGKMVILT---LQPPTYEIFTMISRVLLVSGGR 258
E LR GK ++L+ L+ E + RV +++ GR
Sbjct: 132 REFWELLRELKK------EGKTILLSSHILE----EAERLCDRVAILNNGR 172
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 48.4 bits (116), Expect = 3e-06
Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 34/187 (18%)
Query: 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAF 96
P ++VRG+ S ++ + GV +V E+LAI+ S GK+ +L + G
Sbjct: 7 PLIEVRGVTK--SFGDRVILDGVDLDVPRGEILAILGGSG-SGKSTLLRLILGLLRPDKG 63
Query: 97 QVILNGHSIP------LNALKRRLVYVRSQSFLSPELNVAQTLTF--YSHLRRPPKHSIK 148
+++++G IP L +++R+ + Q L L V + + F H + P
Sbjct: 64 EILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPES---- 119
Query: 149 VTTSEQMGLLIEELGLTQV----LSTRVGRLTTSEL-----KRLSIACCLMSHADILLLD 199
LI EL L ++ L L SEL KR+++A + ++L LD
Sbjct: 120 ---------LIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLD 170
Query: 200 CPTVFMD 206
PT +D
Sbjct: 171 EPTSGLD 177
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 47.6 bits (114), Expect = 4e-06
Identities = 45/218 (20%), Positives = 83/218 (38%), Gaps = 26/218 (11%)
Query: 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSI--PLN 108
K + +S VK E+ + + GK + + G + ++ +G S +
Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNG-AGKTTTMKIILGLIKPDSGEITFDGKSYQKNIE 69
Query: 109 ALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVL 168
AL+R + + F P L + L + L K I ++ +GL
Sbjct: 70 ALRRIGALIEAPGFY-PNLTARENLRLLARLLGIRKKRIDEV--------LDVVGLKDSA 120
Query: 169 STRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGM 228
+V + +RL IA L+ + D+L+LD PT +D L E +
Sbjct: 121 KKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD------ 174
Query: 229 AGKMVIL---TLQPPTYEIFTMISRVLLVSGGRTMYSG 263
G V++ L EI + R+ +++ G+ + G
Sbjct: 175 QGITVLISSHLLS----EIQKVADRIGIINKGKLIEEG 208
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 47.4 bits (113), Expect = 4e-06
Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 10/152 (6%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNA--LKRRL 114
+G+SF + E L + + + +L LAG + +V NG ++ R +
Sbjct: 16 FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNI 75
Query: 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGR 174
+Y+ L PEL+ + L F++ + + +I+ +GL G + +
Sbjct: 76 LYLGHLPGLKPELSALENLHFWAAIHGGAQRTIE-DALAAVGLT----GFEDLP---AAQ 127
Query: 175 LTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
L+ + +RL++A +S A + +LD PT +D
Sbjct: 128 LSAGQQRRLALARLWLSRAPLWILDEPTTALD 159
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 49.0 bits (118), Expect = 4e-06
Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEG---KAILDALAGRNDAKAF 96
L+VR L V+ VSF V+ E+L I + L G + AL G A +
Sbjct: 264 LEVRNLSGGGK------VRDVSFTVRAGEILGI---AGLVGAGRTELARALFGARPASSG 314
Query: 97 QVILNGHSIPLN----ALKRRLVYV---RSQSFLSPELNVAQTLTFYSHLRRPPKHSI-- 147
+++L+G + + A+K + YV R L ++++A+ +T S R + I
Sbjct: 315 EILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDR 374
Query: 148 --KVTTSEQMGLLIEELGL-TQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVF 204
+ +E+ I L + T +G L+ +++ +A L + +L+LD PT
Sbjct: 375 RKERALAERY---IRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRG 431
Query: 205 MDI 207
+D+
Sbjct: 432 IDV 434
Score = 38.3 bits (90), Expect = 0.009
Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 59 GVSFEVKGSEVLAIM-------STSALEGKAILDALAGRNDAKAFQVILNG----HSIPL 107
GVS V+ EV A++ ST ++ L+G + +++++G S P
Sbjct: 26 GVSLTVRPGEVHALLGENGAGKST-------LMKILSGVYPPDSGEILIDGKPVAFSSPR 78
Query: 108 NALKR--RLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKV----TTSEQMGLLIE 160
+AL V+ Q L P L+VA+ + L R P + + L+
Sbjct: 79 DALAAGIATVH---QELSLVPNLSVAENI----FLGREPTRRFGLIDRKAMRRRARELLA 131
Query: 161 ELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPT 202
LGL T VG L+ ++ + + IA L A +L+LD PT
Sbjct: 132 RLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPT 173
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 48.7 bits (117), Expect = 5e-06
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIF 208
++E LGL +L + L+ EL+R++IA L+ AD D PT ++DI
Sbjct: 196 VVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIR 246
Score = 46.3 bits (111), Expect = 3e-05
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
+I+ L L ++L V L+ EL+R++IA CL AD+ LLD P+ +D+
Sbjct: 437 IIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDV 486
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 47.1 bits (113), Expect = 5e-06
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 56 FVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSIP-LNALKRR 113
+ +S V+ E LA++ S GK +L +AG + +++++G + + +R
Sbjct: 15 ALDDLSLTVEPGEFLALLGPS-GCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRN 73
Query: 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVG 173
+ V L P L VA+ + F LR PK I+ ++ L+E +GL +L+
Sbjct: 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIR----ARVRELLELVGLEGLLNRYPH 129
Query: 174 RLTTSELKRLSIACCLMSHADILLLDCP 201
L+ + +R+++A L +LLLD P
Sbjct: 130 ELSGGQQQRVALARALAREPSLLLLDEP 157
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 47.1 bits (113), Expect = 6e-06
Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 37/216 (17%)
Query: 58 QGVSFEVKGSEVLAIM-------STSALEGKAILDALAGRNDAKAFQVILNGHSI---PL 107
+S +K E + I+ ST +L L G + +V+++G + L
Sbjct: 18 DDISLTIKKGEFVLIVGPNGSGKST-------LLRLLNGLLGPTSGEVLVDGKDLTKLSL 70
Query: 108 NALKRRLVYV----RSQSFLSPELNVAQTLTF-YSHLRRPPKHSIKVTTSEQMGLLIEEL 162
L+R++ V Q F P V + + F +L P + + +E +
Sbjct: 71 KELRRKVGLVFQNPDDQ-FFGP--TVEEEVAFGLENLGLPEEEIEERVEE-----ALELV 122
Query: 163 GLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWAS 222
GL + L+ + +R++IA L DILLLD PT +D L+E L+ +
Sbjct: 123 GLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA 182
Query: 223 GGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258
G ++I+T + + RV+++ G+
Sbjct: 183 ---EGKT--IIIVTHDL--DLLLELADRVIVLEDGK 211
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 46.2 bits (110), Expect = 1e-05
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 14/156 (8%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKA----ILDALAGRNDAKAFQVILNGHSIPLNA--L 110
V+GVSF V+ E+ ++ + GK +L L +A + GH + +
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNG-AGKTTTIKMLTTLLKPTSGRA---TVAGHDVVREPREV 71
Query: 111 KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLST 170
+RR+ V + EL + L ++ L P + E L++ +GL +
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDE----LLDFVGLLEAADR 127
Query: 171 RVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
V + +RL IA L+ ++L LD PT+ +D
Sbjct: 128 LVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLD 163
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 46.3 bits (110), Expect = 1e-05
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 60 VSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP-LNALKRRLVYVR 118
V+ EV ++A++ S +L +AG + ++ LNG ++A R++ +V
Sbjct: 19 VNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVF 78
Query: 119 SQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTS 178
L L V + F +R+ PK IK E L+E + L + +L+
Sbjct: 79 QHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEE----LLELVQLEGLGDRYPNQLSGG 134
Query: 179 ELKRLSIACCLMSHADILLLDCP 201
+ +R+++A L +LLLD P
Sbjct: 135 QRQRVALARALAVEPQVLLLDEP 157
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 46.5 bits (111), Expect = 1e-05
Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 32/167 (19%)
Query: 57 VQGVSFEVKGSEVLAIM-------STSALEGKAILDAL---AGRNDAKAFQVILNGHSIP 106
++ +S V+ E+ A++ ST KAIL L +G + + G +
Sbjct: 20 LEDISLSVEKGEITALIGPNGAGKSTLL---KAILGLLKPSSGE-------IKIFGKPVR 69
Query: 107 LNALKRRLVYVRSQSFLSPE--LNVAQT--LTFYSH---LRRPPKHSIKVTTSEQMGLLI 159
+ R+ YV +S + + V L Y RR K + +
Sbjct: 70 KRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDE-----AL 124
Query: 160 EELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
E +G+ + ++G L+ + +R+ +A L + D+LLLD P +D
Sbjct: 125 ERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVD 171
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 45.9 bits (109), Expect = 1e-05
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 11/157 (7%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI-PLN-----AL 110
+ GV VK E +A++ S +L LAG +D + +V L G + ++ L
Sbjct: 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85
Query: 111 KRRLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLS 169
+ + V QSF L P LN + + + LR + L+E+LGL + L
Sbjct: 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSR----NGAKALLEQLGLGKRLD 141
Query: 170 TRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
+L+ E +R+++A D+L D PT +D
Sbjct: 142 HLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 45.9 bits (109), Expect = 1e-05
Identities = 50/158 (31%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 59 GVSFEVKGSEVLAIMSTSALEGKAILDA-LAGRNDAKAFQVILNGHSIPLN--------A 109
GV VK E +AI+ S GK+ L A LAG +D + +V L G PL+ A
Sbjct: 28 GVELVVKRGETVAIVGPSG-SGKSTLLAVLAGLDDPSSGEVRLLGQ--PLHKLDEDARAA 84
Query: 110 LKRRLVYVRSQSF-LSPEL----NVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGL 164
L+ R V QSF L P L NVA L + K L+E +GL
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKA--------LLEAVGL 136
Query: 165 TQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPT 202
+ L+ +L+ E +R+++A D+L D PT
Sbjct: 137 GKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPT 174
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 45.7 bits (109), Expect = 2e-05
Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 7/147 (4%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI-PLNALKRRLV 115
+ GVS ++K E ++ S +L +AG + +++L+G I L KR +
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN 75
Query: 116 YVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGR 174
V Q++ L P L V + + F L++ PK IK +E + L + L + + +
Sbjct: 76 TV-FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDL----VQLEGYANRKPSQ 130
Query: 175 LTTSELKRLSIACCLMSHADILLLDCP 201
L+ + +R++IA L++ +LLLD P
Sbjct: 131 LSGGQQQRVAIARALVNEPKVLLLDEP 157
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 46.7 bits (111), Expect = 2e-05
Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 11/152 (7%)
Query: 60 VSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRS 119
V+ V E+ A++ + ++ L+G ++ + +N + N L +L
Sbjct: 24 VNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNIN--YNKLDHKLAAQLG 81
Query: 120 QSFLSPELNVAQTLTFYSHL---RRPPKHSIKVTT------SEQMGLLIEELGLTQVLST 170
+ EL+V LT +L R K V + +++ +GL L
Sbjct: 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDE 141
Query: 171 RVGRLTTSELKRLSIACCLMSHADILLLDCPT 202
+V L+ S + L IA LM A ++++D PT
Sbjct: 142 KVANLSISHKQMLEIAKTLMLDAKVIIMDEPT 173
Score = 34.4 bits (79), Expect = 0.17
Identities = 44/226 (19%), Positives = 93/226 (41%), Gaps = 28/226 (12%)
Query: 50 SSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI---- 105
+S+++ V+ +SF V E+L +++ L G + ++ LNG I
Sbjct: 272 TSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRS 331
Query: 106 PLNALKRRLVYV---RSQSFLSPELNVAQTLTFYSHLRRP----------PKHSIKVTTS 152
PL+A+K+ + Y+ R + P ++AQ + L+ + +
Sbjct: 332 PLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAEN 391
Query: 153 EQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFF 212
++ L ++ + Q + L+ +++ I+ L ++++ D PT +D+
Sbjct: 392 QRELLALKCHSVNQ----NITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAE 447
Query: 213 LVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258
+ + +R A G VIL + EI T+ R+ + GR
Sbjct: 448 IYKVMRQLADDG-------KVILMVSSELPEIITVCDRIAVFCEGR 486
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 45.1 bits (107), Expect = 3e-05
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 148 KVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
K ++ L+++L L VL + +L+ EL+R++IA L AD D P+ ++DI
Sbjct: 113 KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI 172
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 45.3 bits (108), Expect = 6e-05
Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 22/187 (11%)
Query: 38 PHLQVRGLEVPPSSKNKCF---------VQGVSFEVKGSEVLAIMSTSALEGKA-ILDAL 87
P L VR L S+ F V VSF+++ E L ++ S GK+ + L
Sbjct: 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESG-SGKSTLARIL 337
Query: 88 AGRNDAKAFQVILNGHSIPLNA-------LKRRLVYVRSQSFLSPELNVAQTLTFYSHLR 140
AG + +I +G + L + ++V+ S L+P + V L LR
Sbjct: 338 AGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAE--PLR 395
Query: 141 RPPKHSIKVTTSEQMGLLIEELGL-TQVLSTRVGRLTTSELKRLSIACCLMSHADILLLD 199
S ++ L+E +GL + L L+ + +R++IA L +L+LD
Sbjct: 396 IHGGGS-GAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILD 454
Query: 200 CPTVFMD 206
P +D
Sbjct: 455 EPVSALD 461
Score = 32.2 bits (74), Expect = 0.82
Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 34/187 (18%)
Query: 40 LQVRGL--EVPPSSKNKCFVQGVSFEVKGSEVLAIM-------STSALEGKAILDALAGR 90
L+V L E V+ VSFEV+ E+L I+ ST AL A++ L
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLAL---ALMGLLPEG 62
Query: 91 NDAKAFQVILNGHSI------PLNAL-KRRLVYV--RSQSFLSPELNVAQTLTFYSHLRR 141
+ +VIL+G + + L +R+ + + L+P + + +R
Sbjct: 63 GRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIG------DQIRE 116
Query: 142 PPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGR------LTTSELKRLSIACCLMSHADI 195
+ K + +E +E L L R L+ +R+ IA L +
Sbjct: 117 ALRLHGKGSRAEARKRAVELLEQVG-LPDPERRDRYPHQLSGGMRQRVMIAMALALKPKL 175
Query: 196 LLLDCPT 202
L+ D PT
Sbjct: 176 LIADEPT 182
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 43.7 bits (104), Expect = 6e-05
Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 80 GKA-ILDALAGRNDAKAFQVILNGHSIPLN--ALKRRLVYVRSQSFLSPELNVAQTLTFY 136
GK ++ LA + + ++G + L+RR+ Y+ + + P V + L +
Sbjct: 37 GKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYI 96
Query: 137 SHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196
+ L+ P +K ++ ++E + L ++G L+ +R+ IA L+ IL
Sbjct: 97 AWLKGIPSKEVK----ARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSIL 152
Query: 197 LLDCPTVFMD 206
++D PT +D
Sbjct: 153 IVDEPTAGLD 162
>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter.
Length = 210
Score = 43.8 bits (104), Expect = 7e-05
Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 9/158 (5%)
Query: 344 RQVFALFLRQMAYSQPSSLLNWLSQLLIATILSVIIGCIFWDVPSSDSQLLLNDRFGYHY 403
Q+ AL R+ L L +L+ +++++ G +F ++ +S +R G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLG---GLNRPGLLF 57
Query: 404 TIMCLASWPLLIWLSMARCHGHDRAAVESDIKDGLYSRAVYIIVMLCCSIPASLIIWLGL 463
+ ++ L +S R +E ++ LYS + Y++ + +P SL+ +
Sbjct: 58 FSILFNAFSSLTGISPVFIRE--RGVLERELASPLYSPSAYVLAKILVELPISLLQAIIF 115
Query: 464 VIPAYAMSGLYIQGPDTEAFYIYVGLVIPAYAMSGLYI 501
++ Y M GL + + F + L++ A A SGL +
Sbjct: 116 LLIVYFMVGLPV----SRFFLFLLVLLLTALAASGLGL 149
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 44.4 bits (105), Expect = 7e-05
Identities = 55/237 (23%), Positives = 95/237 (40%), Gaps = 21/237 (8%)
Query: 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQ 97
+ R +E +K V G+SF V+ E ++ + L L G A
Sbjct: 6 APIDFRNVE--KRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGS 63
Query: 98 VILNGHSIPLNA-LKRRLVYVRSQ-SFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQM 155
+ L G +P A R+ V V Q L P+ V + L + + + +
Sbjct: 64 ISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAAR----ALV 119
Query: 156 GLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVE 215
L+E L +VG L+ +RL++A L++ D+L+LD PT +D + E
Sbjct: 120 PPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWE 179
Query: 216 FLRGWASGGPAGMAGKMVILTLQPPTY---EIFTMISRVLLVSGGRTMYSGKRRDML 269
LR + GK ++LT T+ E + R+ ++ GR + G ++
Sbjct: 180 RLRSLLA------RGKTILLT----THFMEEAERLCDRLCVIEEGRKIAEGAPHALI 226
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 42.8 bits (102), Expect = 9e-05
Identities = 52/233 (22%), Positives = 84/233 (36%), Gaps = 63/233 (27%)
Query: 41 QVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIM-------STSALEGKAILDALAGRNDA 93
+V L V + + +S ++ E++ I+ ST +L LAG
Sbjct: 1 EVENLSV--GYGGRTVLDDLSLSIEAGEIVGILGPNGAGKST-------LLKTLAGLLKP 51
Query: 94 KAFQVILNGHSI---PLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVT 150
+ +++L+G + L R++ YV Q+
Sbjct: 52 SSGEILLDGKDLASLSPKELARKIAYV-PQA----------------------------- 81
Query: 151 TSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDT 210
+E LGL + L+ E +R+ +A L ILLLD PT +DI
Sbjct: 82 --------LELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ 133
Query: 211 FFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263
L+E LR A GK V++ L RV+L+ GR + G
Sbjct: 134 IELLELLRRL-----ARERGKTVVMVLHDLNL-AARYADRVILLKDGRIVAQG 180
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 42.9 bits (101), Expect = 1e-04
Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 18/185 (9%)
Query: 58 QGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI--PLNALKRRLV 115
G+SF + E L + + +L LAG + A +V+LNG + +++ R L+
Sbjct: 17 SGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLL 76
Query: 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRL 175
Y+ + L+V + L F+ HS EQ+ + +GL V +L
Sbjct: 77 YLGHAPGIKTTLSVLENLRFWH-----ADHS-----DEQVEEALARVGLNGFEDRPVAQL 126
Query: 176 TTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVIL 235
+ + +R+++A L+S + +LD PT +D E + G + G MV+L
Sbjct: 127 SAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR------GGMVVL 180
Query: 236 TLQPP 240
T
Sbjct: 181 TTHQD 185
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 43.6 bits (103), Expect = 1e-04
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
+ + L + Q+L V L+ EL+R++IA CL ADI LLD P+ ++D+
Sbjct: 99 IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 44.1 bits (104), Expect = 1e-04
Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 7/170 (4%)
Query: 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQ 97
P L++R L S + V VS + E+ A++ S +L LAG A Q
Sbjct: 18 PLLEIRNLT--KSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQ 75
Query: 98 VILNGHSIPLNALKRRLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMG 156
++L+G + +R + + QS+ L P + V Q + F + PK I +E +G
Sbjct: 76 IMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLG 135
Query: 157 LLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
L + + + + +L+ + +R+++A L +LLLD P +D
Sbjct: 136 L----VHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 43.1 bits (102), Expect = 1e-04
Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 22/177 (12%)
Query: 57 VQGVSFEVKGSEVLAIMSTS----ALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKR 112
VQ ++ +K EVLA++ S +L AIL L + +++L+G PL L
Sbjct: 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDG--RPLLPLSI 59
Query: 113 R-----LVYVRSQSFLSPELNVAQTL--TFYSHLRRPPKHSIKVTTSEQMGLLIEELGL- 164
R + ++ +P + T S + + +E +GL
Sbjct: 60 RGRHIATIMQNPRTAFNPLFTMGNHAIETLRSL------GKLSKQARALILEALEAVGLP 113
Query: 165 --TQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRG 219
+VL +L+ L+R+ IA L+ L+ D PT +D+ + +++ LR
Sbjct: 114 DPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 43.7 bits (103), Expect = 2e-04
Identities = 52/225 (23%), Positives = 88/225 (39%), Gaps = 13/225 (5%)
Query: 47 VPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP 106
V S +K V G+SF V E ++ + I + G A ++ + G +P
Sbjct: 47 VSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVP 106
Query: 107 LNA-LKRRLVYVRSQ-SFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGL 164
A L R + V Q L E V + L + I+ L+E L
Sbjct: 107 ARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPS----LLEFARL 162
Query: 165 TQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGG 224
RV L+ +RL++A L++ +L+LD PT +D + E LR +
Sbjct: 163 ESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-- 220
Query: 225 PAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
GK ++LT E + R+ ++ GR + G+ ++
Sbjct: 221 ----RGKTILLTTH-FMEEAERLCDRLCVLEAGRKIAEGRPHALI 260
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 42.7 bits (101), Expect = 2e-04
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 80 GK-AILDALAGRNDAKAFQVILNGHSIPLNA--LKRRLVYVRSQSFLSPELNVAQTLTFY 136
GK +L LAG A +V G I + L+Y+ Q + EL + L F+
Sbjct: 40 GKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFW 99
Query: 137 SHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196
+ + + ++GL + VG+L+ + +R+++A +S A +
Sbjct: 100 QRFHGS-------GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLW 152
Query: 197 LLDCPTVFMD 206
+LD P +D
Sbjct: 153 ILDEPFTALD 162
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 42.8 bits (101), Expect = 2e-04
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 17/176 (9%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTS----ALEGKAILDALAGRNDAKA 95
+++R + + + + V GVS ++ VLA++ S +L A L L A
Sbjct: 5 IELRNIALQAA---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTA 61
Query: 96 FQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQM 155
+V+L+G + AL+ R + Q+ S N T+ +H R K +
Sbjct: 62 GRVLLDGKPVAPCALRGRKIATIMQNPRSA-FNPLHTMH--THARETCLALGKPADDATL 118
Query: 156 GLLIEELGLTQVLSTRVGRLTTSE-----LKRLSIACCLMSHADILLLDCPTVFMD 206
+E +GL RV +L E L+R+ IA L+ A ++ D PT +D
Sbjct: 119 TAALEAVGLENAA--RVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLD 172
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 43.0 bits (102), Expect = 2e-04
Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 17/178 (9%)
Query: 40 LQVRGLEVPPSSKNKCF--VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAF 96
L VR L + F + VS E++ E L I+ S GK+ + LAG +
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESG-SGKSTLARLLAGLEKPSSG 62
Query: 97 QVILNGHSIPLNALKR------RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVT 150
++L+G + + ++V+ S L+P V + L P +
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGR------ILSEPLRPHGLSK 116
Query: 151 TSEQMGLLIEELGLTQ-VLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
+ +++ L++++GL L R L+ + +R++IA L+ +L+LD PT +D+
Sbjct: 117 SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 43.4 bits (103), Expect = 2e-04
Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 14/159 (8%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSI-PLN--ALKR 112
+ ++ +K ++ A++ S GK+ +L+ L G ++ +NG + L+ A ++
Sbjct: 337 LSDLNLTIKAGQLTALVGASG-AGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395
Query: 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRV 172
++ +V +L + + + I +Q GLL E + L T +
Sbjct: 396 QISWVSQNPYLFAG-TIRENILLARPDAS--DEEII-AALDQAGLL-EFVPKPDGLDTVI 450
Query: 173 G----RLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
G L+ + +RL++A L+S A +LLLD PT +D
Sbjct: 451 GEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDA 489
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 41.5 bits (98), Expect = 3e-04
Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 47/175 (26%)
Query: 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP-LNAL 110
+ + ++ +S E+K E +A++ S +L L G + ++ L+G + L
Sbjct: 13 QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKA 72
Query: 111 KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLST 170
L+ V +Q P L F + LR LG
Sbjct: 73 LSSLISVLNQR---PYL-------FDTTLR-------------------NNLGR------ 97
Query: 171 RVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD------IFDTFFLVEFLRG 219
R + E +RL++A L+ A I+LLD PTV +D + F E L+
Sbjct: 98 ---RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF--EVLKD 147
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 43.0 bits (102), Expect = 3e-04
Identities = 46/200 (23%), Positives = 85/200 (42%), Gaps = 34/200 (17%)
Query: 35 EFFPH---------LQVRGLEV-PPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEG---- 80
+P L+VR L P + + V VSF ++ E+L I + L G
Sbjct: 246 ALYPREPHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGI---AGLVGAGRT 302
Query: 81 ---KAILDALAGRNDAKAFQVILNGHSI----PLNALKRRLVYV---RSQSFLSPELNVA 130
+ + A GR + ++ ++G + P A+ + + V R + + P + V
Sbjct: 303 ELVQCLFGAYPGRWEG---EIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVG 359
Query: 131 QTLTFYSHLRRPPKHSIKVTTSEQMGLL--IEELGL-TQVLSTRVGRLTTSELKRLSIAC 187
+ +T + L R S +E +L I+ L + T + RL+ ++ +A
Sbjct: 360 KNITL-AALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAK 418
Query: 188 CLMSHADILLLDCPTVFMDI 207
CL+ + IL+LD PT +D+
Sbjct: 419 CLLLNPKILILDEPTRGIDV 438
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 42.7 bits (101), Expect = 3e-04
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSIP----LNALK 111
+ +S ++K E++A++ S GK+ +L +AG A ++ LNG + L
Sbjct: 18 LDDISLDIKSGELVALLGPSG-AGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD 76
Query: 112 RRLVYVRSQSFLSPELNVAQTLTFYSHLR--RPPKHSIKVTTSEQMGLLIEELGLTQVLS 169
R++ +V L P + VA + F +R RP + I+ E L+ + L +
Sbjct: 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEE----LLRLVQLEGLAD 132
Query: 170 TRVGRLTTSELKRLSIACCLMSHADILLLDCP 201
+L+ + +R+++A L +LLLD P
Sbjct: 133 RYPAQLSGGQRQRVALARALAVEPKVLLLDEP 164
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 42.0 bits (99), Expect = 3e-04
Identities = 40/168 (23%), Positives = 79/168 (47%), Gaps = 25/168 (14%)
Query: 59 GVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSIPLNAL-KRRLVY 116
GVS + E++AI+ +S GK+ +L L G ++ + +V+ NG S L+ L
Sbjct: 23 GVSLSIGKGEIVAIVGSSG-SGKSTLLHLLGGLDNPTSGEVLFNGQS--LSKLSSNERAK 79
Query: 117 VRSQSF--------LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGL-LIEELGLTQV 167
+R++ L P+ + + + + V +++ ++E++GL
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK-----KSVKEAKERAYEMLEKVGLEHR 134
Query: 168 LSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD------IFD 209
++ R L+ E +R++IA L++ ++L D PT +D IFD
Sbjct: 135 INHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD 182
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 42.7 bits (101), Expect = 3e-04
Identities = 59/214 (27%), Positives = 96/214 (44%), Gaps = 37/214 (17%)
Query: 38 PHLQVRGLEV--PPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKA 95
P L++R L P + + GVS ++ E +AI+ S +L LAG D
Sbjct: 333 PTLELRDLSAGYPGAPP---VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQ 389
Query: 96 FQVILNG---HSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLR------RPPKHS 146
+V L+G S+ + ++RR+ + L F + +R RP
Sbjct: 390 GEVTLDGVPVSSLDQDEVRRRVSVCAQDAHL-----------FDTTVRENLRLARPDATD 438
Query: 147 IKVTTS-EQMGL--LIEEL--GLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCP 201
++ + E++GL + L GL VL RL+ E +RL++A L++ A ILLLD P
Sbjct: 439 EELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEP 498
Query: 202 TVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVIL 235
T +D L+E L A ++G+ V+L
Sbjct: 499 TEHLDAETADELLEDLL-------AALSGRTVVL 525
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 41.0 bits (97), Expect = 6e-04
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 59 GVSFEVKGSEVLAIM--STSALEGKA-ILDALAGRNDAKAFQVILNGHSI------PLNA 109
V+ E++ E +AI+ S S GK+ +L+ L G + + +V++NG + L
Sbjct: 23 DVNLEIEAGEFVAIVGPSGS---GKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79
Query: 110 LKRRLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVL 168
L+R+ + Q+F L P+L V + + + K L+E LGL L
Sbjct: 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRK----RAAEELLEVLGLEDRL 135
Query: 169 STRVGRLTTSEL-----KRLSIACCLMSHADILLLDCPT 202
+ SEL +R++IA L+++ I+L D PT
Sbjct: 136 LKK----KPSELSGGQQQRVAIARALINNPKIILADEPT 170
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 40.9 bits (97), Expect = 6e-04
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 27/177 (15%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQV 98
+++RGL S + ++GV +V+ E+LAI+ S GK+ +L + G + +V
Sbjct: 1 IELRGLTK--SFGGRTVLKGVDLDVRRGEILAIIGPSG-SGKSTLLRLIVGLLRPDSGEV 57
Query: 99 ILNGHSIP------LNALKRRLVYVRSQSFLSPELNVAQTLTF--YSHLRRPPKHSIKVT 150
+++G I L L+RR+ + L L V + + F H R + I+
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLS-EEEIREI 116
Query: 151 TSEQMGLLIEELGLTQVLSTRVGRLTTSEL-----KRLSIACCLMSHADILLLDCPT 202
E+ +E +GL L +EL KR+++A L ++LL D PT
Sbjct: 117 VLEK----LEAVGLRGAE-----DLYPAELSGGMKKRVALARALALDPELLLYDEPT 164
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 41.9 bits (99), Expect = 7e-04
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 156 GLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVE 215
+ LG V L+ +R+++A L+ D+LLLD PT +D+ +L +
Sbjct: 136 EEALLGLGFPD-EDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLED 194
Query: 216 FLRGW 220
+L+ +
Sbjct: 195 YLKRY 199
Score = 36.1 bits (84), Expect = 0.043
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 158 LIEELGLTQV-LSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
+ G T VG L+ E RL +A L+ ++LLLD PT +DI
Sbjct: 422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDI 472
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 40.6 bits (96), Expect = 8e-04
Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 21/178 (11%)
Query: 40 LQVRGLEVPPSSKNKCF--VQGVSFEVKGSEVLAIM--STSALEGKAIL-DALAGRNDAK 94
L+V+ L V + + VSF +K E L ++ S S GK+ L A+ G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGS---GKSTLARAILGLLKPT 58
Query: 95 AFQVILNGHSIPLNALKRRLVYVR--------SQSFLSPELNVAQTLTF-YSHLRRPPKH 145
+ +I +G + + + R + + S L+P + + + + + K
Sbjct: 59 SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKK 118
Query: 146 SIKVTTSEQMGLLIEELGL-TQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPT 202
+ E + LL+ +GL +VL+ L+ + +R++IA L + +L+ D PT
Sbjct: 119 EAR---KEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPT 173
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 41.1 bits (97), Expect = 0.001
Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 22/173 (12%)
Query: 38 PHLQVRGLEVPPSSK---NKCFVQGVSFEVKGSEVLAIM--STSALEGKA-ILDALAGRN 91
P L++R + SK + V +S ++K E + ++ S GK +L +AG
Sbjct: 4 PALEIRNV-----SKSFGDFTAVDDISLDIKKGEFVTLLGPSGC---GKTTLLRMIAGFE 55
Query: 92 DAKAFQVILNGHSI-PLNALKRRLVYVRSQSF-LSPELNVAQTLTFYSHLRR-PPKHSIK 148
+ +++L+G I + KR + V QS+ L P + V + + F +R+ K IK
Sbjct: 56 QPSSGEILLDGEDITDVPPEKRPIGMV-FQSYALFPHMTVEENVAFGLKVRKKLKKAEIK 114
Query: 149 VTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCP 201
E +E +GL + +L+ + +R+++A L+ +LLLD P
Sbjct: 115 ARVEE----ALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEP 163
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 41.2 bits (97), Expect = 0.001
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 15/152 (9%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAIL-DALAGRNDAKAFQVILNGHSI------PLNA 109
V S +V+ E+ IM S GK+ L L + +++++G I L
Sbjct: 44 VNDASLDVEEGEIFVIMGLSG-SGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRE 102
Query: 110 LKRRLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGL-LIEELGLTQV 167
L+R+ + + QSF L P V + + F ++ PK E+ L +E +GL
Sbjct: 103 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPK-----AEREERALEALELVGLEGY 157
Query: 168 LSTRVGRLTTSELKRLSIACCLMSHADILLLD 199
L+ +R+ +A L + DILL+D
Sbjct: 158 ADKYPNELSGGMQQRVGLARALANDPDILLMD 189
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 40.2 bits (95), Expect = 0.001
Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 57 VQGVSFEVKGSEVLAIM-------STSALEGKAILDALAGRNDAKAFQVILNGHSIPLNA 109
++ VSFEVK E LAI+ ST +L A+ G + + + G PL
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKST-------LLKAILGLLKPTSGSIRVFG--KPLEK 65
Query: 110 LKRRLVYV---RSQSFLSPELNVAQT--LTFYSH---LRRPPK-HSIKVTTSEQMGLLIE 160
++R+ YV RS P ++V + Y H RR K KV +E
Sbjct: 66 ERKRIGYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAKVDE------ALE 118
Query: 161 ELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGW 220
+GL+++ ++G L+ + +R+ +A L+ D+LLLD P +D + E LR
Sbjct: 119 RVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178
Query: 221 ASGG 224
G
Sbjct: 179 RREG 182
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 40.5 bits (95), Expect = 0.001
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 6/171 (3%)
Query: 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQ 97
L V L + K + ++ VS + E++ ++ S +L+ +AG
Sbjct: 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS 61
Query: 98 VILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGL 157
+ LNG I +R +V+ L P LNV + F LR K + +
Sbjct: 62 IQLNGRRIEGPGAERGVVF--QNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQ---- 115
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIF 208
++ +GL + +L+ +R+ IA L +LLLD P +D
Sbjct: 116 MLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDAL 166
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 40.2 bits (95), Expect = 0.001
Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 22/157 (14%)
Query: 58 QGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116
+G+ VK EV+ I+ S GK+ +L + + + +I++G + + K+ +
Sbjct: 17 KGIDLTVKKGEVVVIIGPSG-SGKSTLLRCINLLEEPDSGTIIIDGLKLTDD--KKNINE 73
Query: 117 VRS------QSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSE----QMGLLIEELGLT 165
+R Q F L P L V + +T P ++ +E + LL E++GL
Sbjct: 74 LRQKVGMVFQQFNLFPHLTVLENITL------APIKVKGMSKAEAEERALELL-EKVGLA 126
Query: 166 QVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPT 202
+L+ + +R++IA L + ++L D PT
Sbjct: 127 DKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 40.5 bits (95), Expect = 0.002
Identities = 44/210 (20%), Positives = 78/210 (37%), Gaps = 25/210 (11%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNA--LKRRL 114
V GV+F+V+ EV + + + L + + G+ + ++R +
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSI 68
Query: 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGR 174
V + + +L + L L PK + E L+E L + VG
Sbjct: 69 GIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEE----LLELFELGEAADRPVGT 124
Query: 175 LTTSELKRLSIACCLMSHADILLLDCPTVFMD------IFDTFFLVEFLRGWASGGPAGM 228
+ +RL IA L+ D+L LD PT +D I+D + L+
Sbjct: 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWD---YIRALKE--------- 172
Query: 229 AGKMVILTLQPPTYEIFTMISRVLLVSGGR 258
G ++LT E + R+ ++ GR
Sbjct: 173 EGVTILLTTH-YMEEADKLCDRIAIIDHGR 201
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 39.8 bits (93), Expect = 0.002
Identities = 44/205 (21%), Positives = 80/205 (39%), Gaps = 11/205 (5%)
Query: 61 SFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQ 120
V E++AIM S +L+ +AG + + + +N S A +R V + Q
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 121 SF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSE 179
L L V Q + H P + E++ +++G+ L +L+ +
Sbjct: 78 ENNLFAHLTVRQNIGLGLH----PGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQ 133
Query: 180 LKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQP 239
+R+++A CL+ ILLLD P D E L A + +L +
Sbjct: 134 RQRVALARCLVRPNPILLLDEP---FSALDPLLREEML---ALVKQLCSERQRTLLMVTH 187
Query: 240 PTYEIFTMISRVLLVSGGRTMYSGK 264
+ + S++ +VS G+
Sbjct: 188 HLSDARAIASQIAVVSQGKIKVVSD 212
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 39.7 bits (94), Expect = 0.002
Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 39/165 (23%)
Query: 57 VQGVSFEVKGSEVLAIM-------STSALEGKAILDALAGRNDAKAFQVILNGHSI---P 106
+ GVS V E++A++ +T +L + G ++ + +G I P
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTT-------LLKTIMGLLPPRSGSIRFDGRDITGLP 68
Query: 107 LNALKRR-LVYV---RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEEL 162
+ R + YV R + F PEL V + L ++ RR K + +E +
Sbjct: 69 PHERARAGIGYVPEGR-RIF--PELTVEENLLLGAYARRRAKRKAR----------LERV 115
Query: 163 -----GLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPT 202
L + G L+ E + L+IA LMS +LLLD P+
Sbjct: 116 YELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 39.5 bits (93), Expect = 0.002
Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 23/158 (14%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAIL-DALAGRNDAKAFQVILNGHSIPLNALKRRLV 115
+ +S ++ E++A+ + GK L LAG + ++LNG I ++ +
Sbjct: 16 LDDLSLDLYAGEIIALTGKNG-AGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG 74
Query: 116 YV----RSQSFLSPELNVAQTLTFYSHLRR--PPKHSIKVTTSEQMGLL-IEELGLTQVL 168
YV Q F T + L + + L + L L
Sbjct: 75 YVMQDVDYQLF---------TDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPL 125
Query: 169 STRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
S L+ + +RL+IA L+S D+L+ D PT +D
Sbjct: 126 S-----LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 39.4 bits (92), Expect = 0.002
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 11/148 (7%)
Query: 62 FEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQS 121
F V E L + + +L LAG ++ Q+ ++G + R + Y+
Sbjct: 32 FHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLP 91
Query: 122 FLSPELNVAQTLTFYS--HLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSE 179
L +L+ + L F H RR K + ++ GL T V +L+ +
Sbjct: 92 GLKADLSTLENLHFLCGLHGRRA-----KQMPGSALAIV----GLAGYEDTLVRQLSAGQ 142
Query: 180 LKRLSIACCLMSHADILLLDCPTVFMDI 207
KRL++A +S A + LLD P +D+
Sbjct: 143 KKRLALARLWLSPAPLWLLDEPYANLDL 170
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 39.5 bits (93), Expect = 0.002
Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 36/217 (16%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDAL-AGRNDAKAFQVILNGHSI---PLNALKR 112
+ VS ++ E +AI+ GK+ L L AG + V+L+G I L+R
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVG-SGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78
Query: 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV----- 167
+ YV L FY LR + E++ E G+T
Sbjct: 79 NIGYVPQDVTL-----------FYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHP 127
Query: 168 --LSTRVGR----LTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWA 221
L ++G L+ + + +++A L++ ILLLD PT MD+ L E LR
Sbjct: 128 NGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL 187
Query: 222 SGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258
++I+T +P + ++ R++++ GR
Sbjct: 188 GD------KTLIIITHRPS---LLDLVDRIIVMDSGR 215
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 40.4 bits (95), Expect = 0.002
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 23/162 (14%)
Query: 58 QGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL--NALKRRLV 115
+ + + E +AI+ S +L LAG D + + LNG I R +
Sbjct: 355 KNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETI 414
Query: 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT-------QVL 168
V +Q L F LR + + + E++ ++++GL L
Sbjct: 415 SVLTQR---VHL-------FSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGL 464
Query: 169 STRVG----RLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
+T +G RL+ E +RL++A L+ A + LLD PT +D
Sbjct: 465 NTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLD 506
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 39.4 bits (93), Expect = 0.002
Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 34/163 (20%)
Query: 57 VQGVSFEVKGSEVLAIM-------STSALEGKAILDALAGRNDAKAFQVILNGHSI---- 105
++GVS EV+ E++A++ +T +L + G ++ ++I +G I
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTT-------LLKTIMGLVRPRSGRIIFDGEDITGLP 71
Query: 106 PLNALKRRLVYVRSQSFLSPE-LNVAQTLTFYSHLR-----RPPKHSIKVTTSEQMGLLI 159
P + + YV PE + LT +L R K + + E L
Sbjct: 72 PHERARLGIAYV-------PEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFP 124
Query: 160 EELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPT 202
L + + R G L+ E + L+IA LMS +LLLD P+
Sbjct: 125 R---LKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 164
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 39.9 bits (94), Expect = 0.002
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR-NDAKAFQVILNGHSI------PLNA 109
+ VS E+ E+ I+ S GK+ L L + V ++G + L
Sbjct: 22 LDDVSLEIPKGEIFGIIGYSG-AGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80
Query: 110 LKRRLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVL 168
L++++ + Q F L V + + F L PK IK +E L+E +GL+
Sbjct: 81 LRQKIGMI-FQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAE----LLELVGLSDKA 135
Query: 169 STRVGRLTTSELKRLSIACCLMSHADILLLDCPT 202
+L+ + +R++IA L ++ ILL D T
Sbjct: 136 DRYPAQLSGGQKQRVAIARALANNPKILLCDEAT 169
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 39.1 bits (92), Expect = 0.003
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 8/146 (5%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSIPLNALKRRLV 115
++ ++ V+ E +AI+ S GK+ +L +AG + +V+L+G P+ +
Sbjct: 19 LEDINLSVEKGEFVAILGPSGC-GKSTLLRLIAGLEKPTSGEVLLDG--RPVTGPGPDIG 75
Query: 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRL 175
YV + L P L V + LR K + E L+E +GL +L
Sbjct: 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKE----LLELVGLAGFEDKYPHQL 131
Query: 176 TTSELKRLSIACCLMSHADILLLDCP 201
+ +R++IA L + +LLLD P
Sbjct: 132 SGGMRQRVAIARALATRPKLLLLDEP 157
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 39.8 bits (93), Expect = 0.003
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 80 GKA-ILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSF-LSPELNVAQTLTFYS 137
GK +L LAG + ++L+G + R + + QS+ L P + V + + F
Sbjct: 8 GKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGL 67
Query: 138 HLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILL 197
+R+ P+ IK E + L+ L + + +L+ + +R+++A L+ ILL
Sbjct: 68 KMRKVPRAEIKPRVLEALRLV----QLEEFADRKPHQLSGGQQQRVALARALVFKPKILL 123
Query: 198 LDCPTVFMD 206
LD P +D
Sbjct: 124 LDEPLSALD 132
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 39.7 bits (93), Expect = 0.003
Identities = 51/235 (21%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVI 99
L+VR L +S + ++ VSF++ E+L I + I++ L G + A +
Sbjct: 251 LEVRNL----TSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTIT 306
Query: 100 LNGHSI----PLNALKRRLVYV----RSQ---SFLSPELNVAQTLTFYSHLRRPPKHSIK 148
L+G I A+ V RS ++L N + S++R K+ +
Sbjct: 307 LHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFN-----SLISNIRN-YKNKVG 360
Query: 149 VTTSEQMG----LLIEELGL-TQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTV 203
+ + +M +I+ + + T T++G L+ +++ I L++ +IL+LD PT
Sbjct: 361 LLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTR 420
Query: 204 FMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258
+D+ F + + + A ++I++ + P E+ + R+L++S G
Sbjct: 421 GIDVGAKFEIYQLIAELAKKDKG-----IIIISSEMP--ELLGITDRILVMSNGL 468
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 38.8 bits (91), Expect = 0.003
Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 22/166 (13%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSI------PLNA 109
++ ++ + E +AI+ S GK+ +L + + + ++L G I L
Sbjct: 18 LKNINLNINPGEFVAIIGPSG-AGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRK 76
Query: 110 LKRRLVYVRSQSFLSPELNVAQTL---------TFYSHLRRPPKHSIKVTTSEQMGLLIE 160
L+RR+ + L L V + + T+ S L R + + S +E
Sbjct: 77 LRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALS-----ALE 131
Query: 161 ELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
+GL R +L+ + +R++IA L D++L D P +D
Sbjct: 132 RVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLD 177
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 39.1 bits (91), Expect = 0.003
Identities = 51/220 (23%), Positives = 86/220 (39%), Gaps = 13/220 (5%)
Query: 47 VPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP 106
V S +K V +SF + E ++ + I L G ++ + G +P
Sbjct: 10 VSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVP 69
Query: 107 LNA-LKRRLVYVRSQ-SFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGL 164
A L R + V Q L PE V + L + I+ + L+E L
Sbjct: 70 SRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIE----AVIPSLLEFARL 125
Query: 165 TQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGG 224
RV L+ +RL++A L++ +L+LD PT +D + E LR +
Sbjct: 126 ESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-- 183
Query: 225 PAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264
GK ++LT E + R+ ++ GR + G+
Sbjct: 184 ----RGKTILLTTH-FMEEAERLCDRLCVLESGRKIAEGR 218
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 38.3 bits (90), Expect = 0.005
Identities = 42/206 (20%), Positives = 78/206 (37%), Gaps = 49/206 (23%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA---KAF 96
L L S K + V VS EV E++ L G N A F
Sbjct: 5 LVAENLA--KSYKKRKVVNDVSLEVNSGEIVG---------------LLGPNGAGKTTTF 47
Query: 97 ------------QVILNGHSI---PLNALKRR-LVYVRSQS--F--LSPELNVAQTLTFY 136
+++L+ I P++ R + Y+ ++ F L+ E N+ L
Sbjct: 48 YMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIR 107
Query: 137 SHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADIL 196
+ + ++ L+EE +T + ++ L+ E +R+ IA L ++ +
Sbjct: 108 EKDLKKAERKEELDA------LLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFI 161
Query: 197 LLDCPTVFMD---IFDTFFLVEFLRG 219
LLD P +D + D +++ L+
Sbjct: 162 LLDEPFAGVDPIAVIDIQRIIKHLKD 187
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 39.0 bits (91), Expect = 0.006
Identities = 45/223 (20%), Positives = 100/223 (44%), Gaps = 39/223 (17%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEG-------KAILDALAGRNDAKAFQVILNGHSI---- 105
V VSF ++ E+L + + L G +A+ A G+ + V +NG +
Sbjct: 276 VDDVSFSLRRGEILGV---AGLVGAGRTELVQALFGAYPGKFEGN---VFINGKPVDIRN 329
Query: 106 PLNALKRRLVYV---RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEEL 162
P A++ + V R + + P L V + +T S L+ ++ + ++ ++ +
Sbjct: 330 PAQAIRAGIAMVPEDRKRHGIVPILGVGKNITL-SVLKSFCFKM-RIDAAAELQIIGSAI 387
Query: 163 GLTQVLSTR-------VGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVE 215
Q L + +GRL+ ++ +A L+++ +L+LD PT +D+ + + +
Sbjct: 388 ---QRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYK 444
Query: 216 FLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGR 258
+ A G A +++++ + E+ + RVL++ G+
Sbjct: 445 LINQLAQEGVA-----IIVVSSELA--EVLGLSDRVLVIGEGK 480
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 38.0 bits (89), Expect = 0.006
Identities = 51/228 (22%), Positives = 98/228 (42%), Gaps = 31/228 (13%)
Query: 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSI----PL 107
K ++ VS E++ E + ++ + GK+ +L L G + +V+++G L
Sbjct: 16 RKAALKDVSLEIEKGERVLLIGPNG-SGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSL 74
Query: 108 NALKRRLVYVRSQSFLSPEL-----NVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEEL 162
L++++ V F +P+ V + F P+ I+ +E +E +
Sbjct: 75 LELRQKVGLV----FQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE----ALELV 126
Query: 163 GLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWAS 222
GL ++L L+ + +R++IA L +ILLLD PT +D L+E L+
Sbjct: 127 GLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE 186
Query: 223 GGPAGMAGKMVILTLQPPT---YEIFTMISRVLLVSGGRTMYSGKRRD 267
G GK +I+ T + RV+++ G+ + G +
Sbjct: 187 EG-----GKTIII----VTHDLELVLEYADRVVVLDDGKILADGDPAE 225
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 38.0 bits (89), Expect = 0.006
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 27/166 (16%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI---PLNALKRR 113
V V+ EV+ E+++++ + + + L G ++L G I P + + R
Sbjct: 21 VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80
Query: 114 LVYVRS-QSF-LSPELNVAQTLTFYSHL----------------RRPPKHSIKVTTSEQM 155
V VR+ Q L E+ V + L H RR ++ ++
Sbjct: 81 GV-VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEAL-----DRA 134
Query: 156 GLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCP 201
+E +GL + + + G L + +RL IA C+++ +IL+LD P
Sbjct: 135 ATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEP 180
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 37.6 bits (88), Expect = 0.006
Identities = 46/212 (21%), Positives = 81/212 (38%), Gaps = 37/212 (17%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAF---QVILNGHSIPLNALK-- 111
++ S VK E++ ++ +L ALA R + + NG A K
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82
Query: 112 RRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTR 171
++YV + P L V +TL F + +
Sbjct: 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK-----------GNEF---------------- 115
Query: 172 VGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGK 231
V ++ E KR+SIA L+S A +L D T +D +++ +R A +
Sbjct: 116 VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMAD-----VLKT 170
Query: 232 MVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263
++L + EI+ + +VL++ GR +Y G
Sbjct: 171 TTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 38.3 bits (89), Expect = 0.006
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 33/175 (18%)
Query: 46 EVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR-------------ND 92
EV SS K ++ +S + +G + I+ S GK+ L L R D
Sbjct: 8 EVSYSSFGKEILKDISVKFEGGAIYTIVGPSG-AGKSTLIKLINRLIDPTEGSILIDGVD 66
Query: 93 AKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTS 152
K VI L+R++ V Q L E V + + L+ + ++ V
Sbjct: 67 IKTIDVID---------LRRKIGMVFQQPHLF-EGTVKDNIEYGPMLK--GEKNVDVE-- 112
Query: 153 EQMGLLIEELGLTQVLSTR-VGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
+ +GL + +TR V L+ E +R+SIA L ++ ++LLLD PT +D
Sbjct: 113 ----YYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALD 163
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 38.4 bits (89), Expect = 0.007
Identities = 47/220 (21%), Positives = 92/220 (41%), Gaps = 14/220 (6%)
Query: 60 VSFEVKGSEVLAIMSTSALEGKAILDALAG--RNDAKAFQVILNGHSIP-LNALKRRLVY 116
+S E++ E+LA++ S +L A+AG + ++ + + KR L
Sbjct: 24 LSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLAL 83
Query: 117 VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLT 176
+ L P L V + F ++ PK I +E++ ++ +GL + +L+
Sbjct: 84 LFQNYALFPHLKVEDNVAFGLRAQKMPKADI----AERVADALKLVGLGDAAAHLPAQLS 139
Query: 177 TSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILT 236
+R++IA + D+LLLD P +D + E + P ++ IL
Sbjct: 140 GGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELP-----ELTILC 194
Query: 237 LQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFAAAD 276
+ + T+ + ++ GR G+ + + Y A AD
Sbjct: 195 VTHDQDDALTLADKAGIMKDGRLAAHGEPQAL--YDAPAD 232
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 37.6 bits (88), Expect = 0.008
Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 11/157 (7%)
Query: 57 VQGVSFEVKGSEVLAIM-STSALEGKA-ILDALAGRNDAKAFQVILNG---HSIPLNALK 111
++ ++F +K E +AI+ T A GK +++ L D + Q++++G I +L+
Sbjct: 19 LKDINFSIKPGETVAIVGPTGA--GKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLR 76
Query: 112 RRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEEL--GLTQVLS 169
+ V +FL + + + + I+ I +L G VL
Sbjct: 77 SMIGVVLQDTFLFSG-TIMENIR-LGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLG 134
Query: 170 TRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
G L+ E + L+IA ++ IL+LD T +D
Sbjct: 135 ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNID 171
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 37.5 bits (87), Expect = 0.010
Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 15/156 (9%)
Query: 60 VSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNAL--------- 110
VSF + E++AI+ +S +L L G + + VI NG P++ L
Sbjct: 28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQ--PMSKLSSAAKAELR 85
Query: 111 KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLST 170
++L ++ L P+ + + + + I E ++ +GL +
Sbjct: 86 NQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALE----MLAAVGLEHRANH 141
Query: 171 RVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
R L+ E +R++IA L+++ ++L D PT +D
Sbjct: 142 RPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 37.1 bits (86), Expect = 0.010
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 5/139 (3%)
Query: 64 VKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLV-YVRSQSF 122
E+ AI+ S +L+ +AG ++ +V++NG + R V + ++
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENN 80
Query: 123 LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKR 182
L L V Q + L P + + + + + +GL + G L+ E +R
Sbjct: 81 LFAHLTVEQNVG----LGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQR 136
Query: 183 LSIACCLMSHADILLLDCP 201
+++A L+ +LLLD P
Sbjct: 137 VALARVLVRDKPVLLLDEP 155
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 35.9 bits (84), Expect = 0.012
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 179 ELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGW 220
E RL++A L+ + ++LLLD PT +D+ L E L+ +
Sbjct: 75 EKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY 116
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 36.4 bits (84), Expect = 0.016
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 175 LTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
L+ EL+R++IA L+ +A L D P+ ++DI
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDI 104
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 36.9 bits (86), Expect = 0.018
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 58 QGVSFEV-KGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSIPLNALKRRLV 115
G+S E+ +G V I S A GK+ +L+A+AG + Q++++G + ++ +R
Sbjct: 23 NGLSLEIAEGDFVTVIGSNGA--GKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80
Query: 116 YVRSQSFLSPELNVAQTLTFYSHL----RRPPKHSI------KVTTSEQMGLLIEELGLT 165
+ ++ F P A LT +L R K + + +S + L LGL
Sbjct: 81 LL-ARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE 139
Query: 166 QVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
LS R+G L+ + + LS+ + ILLLD T +D
Sbjct: 140 NRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 37.1 bits (86), Expect = 0.019
Identities = 30/152 (19%), Positives = 67/152 (44%), Gaps = 6/152 (3%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALK--RRL 114
+ VSFE + ++ + + + + G + V + G + N + R +
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNI 77
Query: 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGR 174
Y+ + L ++ V + L F + + +K +++ +IE +GL ++G+
Sbjct: 78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLK----QRVEEMIELVGLRPEQHKKIGQ 133
Query: 175 LTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
L+ +R+ +A L+ +L+LD PT +D
Sbjct: 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 36.4 bits (84), Expect = 0.023
Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 17/154 (11%)
Query: 60 VSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP---LNALKRRLVY 116
+S V+ E +AI S +L +A + ++ G + A ++++ Y
Sbjct: 22 ISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSY 81
Query: 117 VRSQSFLSPELNVAQTLTFYSHLR--RP-PKHSIKVTTSEQMGLLIEELGLTQ-VLSTRV 172
L + V L F +R RP ++ L+ L +L+ +
Sbjct: 82 CAQTPALFGD-TVEDNLIFPWQIRNRRPDRAAALD---------LLARFALPDSILTKNI 131
Query: 173 GRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
L+ E +R+++ L ILLLD T +D
Sbjct: 132 TELSGGEKQRIALIRNLQFMPKILLLDEITSALD 165
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 36.0 bits (83), Expect = 0.027
Identities = 47/220 (21%), Positives = 79/220 (35%), Gaps = 29/220 (13%)
Query: 61 SFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI---PLNALKRRLVYV 117
S EV+ E+L ++ + +L +AG + G + L R Y+
Sbjct: 19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSG-SIQFAGQPLEAWSATELARHRAYL 77
Query: 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTT 177
Q + V LT + + T +E + + L L L +L+
Sbjct: 78 SQQQTPPFAMPVWHYLTLHQPDK---------TRTELLNDVAGALALDDKLGRSTNQLSG 128
Query: 178 SELKRLSIA-CCLMSHADI------LLLDCPTVFMDIFDTFFLVEFLRGWASGGPAG-MA 229
E +R+ +A L D LLLD P +D+ L L G A M+
Sbjct: 129 GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMS 188
Query: 230 GKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
+ TL+ R L+ G+ + SG+R ++L
Sbjct: 189 SHDLNHTLR--------HAHRAWLLKRGKLLASGRREEVL 220
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 36.0 bits (84), Expect = 0.029
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 30/158 (18%)
Query: 59 GVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSI----PLNALKRR 113
GVS EV EV ++ + + GK +L L G K+ + L+G I P +
Sbjct: 18 GVSLEVPKGEVTCVLGRNGV-GKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAG 76
Query: 114 LVYV---RSQSFLSPELNVAQTL-TFYSHLRRPPKHSIKVTTSEQMGLLIEEL-----GL 164
+ YV R + F P L V + L T + L R + + +E+ L
Sbjct: 77 IAYVPQGR-EIF--PRLTVEENLLTGLAALPRRSRK------------IPDEIYELFPVL 121
Query: 165 TQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPT 202
++L R G L+ + ++L+IA L++ +LLLD PT
Sbjct: 122 KEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 35.8 bits (83), Expect = 0.032
Identities = 33/156 (21%), Positives = 69/156 (44%), Gaps = 14/156 (8%)
Query: 59 GVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLV-YV 117
G++ + E + ++ S +L + + + +NG ++ L+ R + Y+
Sbjct: 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNG--QDVSDLRGRAIPYL 76
Query: 118 RS------QSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLST 170
R Q F L P+ NV + + F + P I+ +++ +E +GL+
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIR----KRVPAALELVGLSHKHRA 132
Query: 171 RVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
L+ E +R++IA +++ IL+ D PT +D
Sbjct: 133 LPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLD 168
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 36.9 bits (85), Expect = 0.033
Identities = 42/199 (21%), Positives = 87/199 (43%), Gaps = 14/199 (7%)
Query: 67 SEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP--LNALKRRLVYVRSQSFLS 124
+++ A + + L L G + V++ G I L+A+++ L + L
Sbjct: 956 NQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILF 1015
Query: 125 PELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLS 184
L VA+ + FY+ L+ ++ +M ++E+ GL + L+ ++LS
Sbjct: 1016 HHLTVAEHILFYAQLKGRSWEEAQL----EMEAMLEDTGLHHKRNEEAQDLSGGMQRKLS 1071
Query: 185 IACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEI 244
+A + A +++LD PT +D + + + L + S G+ +I++ E
Sbjct: 1072 VAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRS-------GRTIIMSTHHMD-EA 1123
Query: 245 FTMISRVLLVSGGRTMYSG 263
+ R+ ++S GR SG
Sbjct: 1124 DLLGDRIAIISQGRLYCSG 1142
Score = 32.3 bits (73), Expect = 0.86
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 133 LTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSH 192
L Y+ LR P I+ + I+ LGL+ G + ++LS A L+
Sbjct: 2033 LYLYARLRGVPAEEIEKVANWS----IQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGC 2088
Query: 193 ADILLLDCPTVFMD 206
++LLD PT MD
Sbjct: 2089 PPLVLLDEPTTGMD 2102
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 36.0 bits (83), Expect = 0.033
Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 18/184 (9%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR-----NDAK 94
+++R L+V S + GV+ E+ + + A+M S GK+ L + R +A+
Sbjct: 4 IEIRDLKV--SFGQVEVLDGVNLEIPDNTITALMGPSG-SGKSTLLRVFNRLIELYPEAR 60
Query: 95 -AFQVILNGHSI---PLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVT 150
+ +V L+G I + L+RR+ V P L++ + + L R K K
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKS--KKE 118
Query: 151 TSEQMGLLIEELGLTQVLSTRV----GRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
E++ +E+ L + R+ G+L+ + +RL IA L ++LL D PT +D
Sbjct: 119 LQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLD 178
Query: 207 IFDT 210
+T
Sbjct: 179 PENT 182
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 36.6 bits (85), Expect = 0.034
Identities = 39/179 (21%), Positives = 78/179 (43%), Gaps = 20/179 (11%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR-NDAKAFQV 98
++ R + +++ + +S ++ E +A++ S GK+ L L R + + Q+
Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSG-SGKSTLVNLIPRFYEPDSGQI 389
Query: 99 ILNGHSIP---LNALKRRLVYVRSQSFL---SPELNVAQTLTFYSHLRRPPKHSIKVTTS 152
+L+GH + L +L+R++ V L + N+A Y + + I+ +
Sbjct: 390 LLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIA-----YGRTEQADRAEIE--RA 442
Query: 153 EQMGLLIE-----ELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
+ LGL + L+ + +RL+IA L+ A IL+LD T +D
Sbjct: 443 LAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALD 501
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 35.5 bits (83), Expect = 0.036
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 40 LQVRGLEV--PPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAF 96
L+VR + ++ +S V+ E +A++ S GK+ +L +AG +
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGC-GKSTLLRIIAGLERPTSG 59
Query: 97 QVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMG 156
+V+++G P+ YV Q L P L V + L+ PK + E
Sbjct: 60 EVLVDGE--PVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEE--- 114
Query: 157 LLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCP 201
L+E +GL+ + +L+ +R+++A L D+LLLD P
Sbjct: 115 -LLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEP 158
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 36.0 bits (84), Expect = 0.043
Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 11/152 (7%)
Query: 58 QGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSIPLNALKRRL-- 114
+SF+ + +V A+M + GK+ +L L+G A ++++G + + L
Sbjct: 21 DDISFDCRAGQVHALMGENG-AGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 115 -VYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSI--KVTTSEQMGLLIEELGLTQVLST 170
V + Q L PE+ VA+ L + L P K I + + + +E LG+ T
Sbjct: 80 GVAIIYQELHLVPEMTVAENL-YLGQL--PHKGGIVNRRLLNYEAREQLEHLGVDIDPDT 136
Query: 171 RVGRLTTSELKRLSIACCLMSHADILLLDCPT 202
+ L+ + + + IA L +A ++ D PT
Sbjct: 137 PLKYLSIGQRQMVEIAKALARNARVIAFDEPT 168
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 35.3 bits (82), Expect = 0.043
Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 15/149 (10%)
Query: 60 VSFEVKGSEVLAIMSTSALEGKAILDALAGR-NDAKAFQVILNGHSI---PLNALKRRLV 115
+S ++ E +A++ S GK+ L L R D + +++++GH + L +L+R++
Sbjct: 21 ISLDIPAGETVALVGPSG-SGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79
Query: 116 YVRSQSFL---SPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEEL--GLTQVLST 170
V FL + N+A Y + + + I EL G V+
Sbjct: 80 LVSQDVFLFNDTVAENIA-----YGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGE 134
Query: 171 RVGRLTTSELKRLSIACCLMSHADILLLD 199
R +L+ + +R++IA L+ IL+LD
Sbjct: 135 RGVKLSGGQRQRIAIARALLKDPPILILD 163
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 35.9 bits (83), Expect = 0.044
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 15/156 (9%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVIL---NGHSIPLNALKRR 113
V S +++ E+ +M S +L A+ G N V++ +G N
Sbjct: 40 VHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAAT 99
Query: 114 LVYVRS-------QSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT 165
L +R+ Q F L P V + + F ++ PK + EQ+ E +GL
Sbjct: 100 LRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQL----ELVGLA 155
Query: 166 QVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCP 201
Q + G L+ +R+ +A + A ILL+D P
Sbjct: 156 QWADRKPGELSGGMQQRVGLARAFATEAPILLMDEP 191
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 36.1 bits (84), Expect = 0.047
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 15/155 (9%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHS---IPLNALKR 112
++ +S E+ E +AI+ S GK+ +L L G + +++L+G I L +L+R
Sbjct: 489 LEDLSLEIPPGEKVAIVGRSG-SGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547
Query: 113 RLVYVRSQSFL---SPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEEL--GLTQV 167
++ YV FL S N+A + + ++ IE L G
Sbjct: 548 QVGYVLQDPFLFSGSIRENIALGNPEATDEEI--IEAAQLA---GAHEFIENLPMGYDTP 602
Query: 168 LSTRVGRLTTSELKRLSIACCLMSHADILLLDCPT 202
+ L+ + +RL++A L+S ILLLD T
Sbjct: 603 VGEGGANLSGGQRQRLALARALLSKPKILLLDEAT 637
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 34.9 bits (81), Expect = 0.062
Identities = 56/222 (25%), Positives = 89/222 (40%), Gaps = 27/222 (12%)
Query: 60 VSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSI---PLNALKRRLV 115
+S EV+ E+L ++ + GK+ +L +AG + G + L R
Sbjct: 15 LSAEVRAGEILHLVGPNG-AGKSTLLARMAGLLPGSG-SIQFAGQPLEAWSAAELARHRA 72
Query: 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRL 175
Y+ Q + V Q LT L +P K + S + + E LGL L V +L
Sbjct: 73 YLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVAS-ALNEVAEALGLDDKLGRSVNQL 127
Query: 176 TTSELKRLSIA-CCLMSHADI------LLLDCPTVFMDIFDTFFLVEFLRGWAS-GGPAG 227
+ E +R+ +A L DI LLLD P +D+ L L G
Sbjct: 128 SGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVV 187
Query: 228 MAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
M+ + TL+ RV L+ G+ + SG+R ++L
Sbjct: 188 MSSHDLNHTLRHAD--------RVWLLKQGKLLASGRRDEVL 221
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 35.2 bits (81), Expect = 0.079
Identities = 54/241 (22%), Positives = 95/241 (39%), Gaps = 24/241 (9%)
Query: 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQ 97
P + V L V + + GV V+ ++ ++ + +L A+ G A
Sbjct: 2 PMIDVSDLSV--EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGT 59
Query: 98 VILNG---HSIPLNALKRRLVYVRSQSFLSPELNVAQTLTF--YSHLRRPPKHSIKVTTS 152
V++ G ++ A RR+ V + LS E +V Q + H R + +
Sbjct: 60 VLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA 119
Query: 153 EQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFF 212
+ +E G+ Q V L+ E +R+ +A L +LLLD PT +DI
Sbjct: 120 VERA--MERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVR 177
Query: 213 LVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISR----VLLVSGGRTMYSGKRRDM 268
+E +R G +A I L + +R ++L++ GR +G D+
Sbjct: 178 TLELVRRLVDDGKTAVAA---IHDLD--------LAARYCDELVLLADGRVRAAGPPADV 226
Query: 269 L 269
L
Sbjct: 227 L 227
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 34.4 bits (79), Expect = 0.089
Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR-NDAKAFQVILNGHSIPL---NALKR 112
+ +S +K EV+ I+ S GK+ L L R + +V+++GH + L L+R
Sbjct: 18 LDNISLRIKPGEVVGIVGRSG-SGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76
Query: 113 RLVYVRSQSFL---SPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGL--LIEEL--GLT 165
++ V ++ L S N+A + + ++ G I EL G
Sbjct: 77 QVGVVLQENVLFNRSIRDNIALADP------GMSMERV-IEAAKLAGAHDFISELPEGYD 129
Query: 166 QVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
++ + L+ + +R++IA L+ + IL+ D T +D
Sbjct: 130 TIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALD 170
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 34.6 bits (80), Expect = 0.090
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 7/143 (4%)
Query: 61 SFEVKGSEVLAIMSTSALEGKAILDAL-AGRNDAKAFQVILNGHSIPLNALKRRLVYVRS 119
V+ E +AI+ S GK+ L L AG + + LNG RR V +
Sbjct: 19 DLTVERGERVAILGPSG-AGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLF 77
Query: 120 Q-SFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTS 178
Q + L L VAQ + + P + E++ + ++G+ +L+ G+L+
Sbjct: 78 QENNLFSHLTVAQNIGLGLN----PGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGG 133
Query: 179 ELKRLSIACCLMSHADILLLDCP 201
+ +R+++A CL+ ILLLD P
Sbjct: 134 QRQRVALARCLVREQPILLLDEP 156
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 34.9 bits (81), Expect = 0.091
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 37/190 (19%)
Query: 40 LQVRGLEVPPSSKNKCF--VQGVSFEVKGSEVLAIM-------STSALEGKAILDAL-AG 89
L+V+ L V + V GVSFE+K E+L I+ S A KAI+ L
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLA---KAIMGLLPKP 58
Query: 90 RNDAKAFQVILNGHSIPLNALKRRLVYVR----------SQSFLSPELNVAQTL--TFYS 137
+++ +G + L+ ++ L +R + L+P + + +
Sbjct: 59 NARIVGGEILFDGKDL-LSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRL 117
Query: 138 HLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSEL-----KRLSIACCLMSH 192
H + K K E L+E +G+ R + EL +R+ IA L +
Sbjct: 118 HGKGLSKKEAKERAIE----LLELVGIPD--PERRLKSYPHELSGGMRQRVMIAMALALN 171
Query: 193 ADILLLDCPT 202
+L+ D PT
Sbjct: 172 PKLLIADEPT 181
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 34.6 bits (80), Expect = 0.091
Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 7/149 (4%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR-NDAKAFQVILNGHSI---PLNALKR 112
V ++ E+ E L ++ S GK + R + + ++ ++G I L+R
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSG-SGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75
Query: 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRV 172
++ YV Q L P + V + + L + PK I+ E + L+ L +
Sbjct: 76 KIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALV--GLDPAEFADRYP 133
Query: 173 GRLTTSELKRLSIACCLMSHADILLLDCP 201
L+ + +R+ +A L + +LL+D P
Sbjct: 134 HELSGGQQQRVGVARALAADPPLLLMDEP 162
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 33.8 bits (78), Expect = 0.13
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 14/153 (9%)
Query: 58 QGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALK------ 111
VS ++ E L + S +L L G QV + G +N L+
Sbjct: 19 HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGE--DVNRLRGRQLPL 76
Query: 112 -RRLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLS 169
RR + V Q F L P+ V + + +R + I+ ++G + ++GL
Sbjct: 77 LRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQ----RRVGAALRQVGLEHKAD 132
Query: 170 TRVGRLTTSELKRLSIACCLMSHADILLLDCPT 202
+L+ E +R++IA +++ +LL D PT
Sbjct: 133 AFPEQLSGGEQQRVAIARAIVNSPPLLLADEPT 165
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 33.8 bits (77), Expect = 0.14
Identities = 30/159 (18%), Positives = 71/159 (44%), Gaps = 15/159 (9%)
Query: 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP--LNA 109
++ +Q +SF + +L + ++ +L +AG + + +++ SI L
Sbjct: 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCT 71
Query: 110 LKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGL--LIEELGLTQV 167
+++L +V +S ++P L + + + H + +G+ L L +
Sbjct: 72 YQKQLCFVGHRSGINPYLTLRENCLYDIH-----------FSPGAVGITELCRLFSLEHL 120
Query: 168 LSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
+ G L++ + +++++ MS A + LLD P V +D
Sbjct: 121 IDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 34.1 bits (78), Expect = 0.14
Identities = 47/227 (20%), Positives = 91/227 (40%), Gaps = 24/227 (10%)
Query: 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI---PLN 108
K + V+ VS V E++ ++ + + G A +I++ I PL+
Sbjct: 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLH 73
Query: 109 ALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGL---LIEELGLT 165
A RR + +L E ++ + L+ Y +L + ++ ++ L+EE +
Sbjct: 74 ARARRGI-----GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE 128
Query: 166 QVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD---IFDTFFLVEFLRGWAS 222
+ + L+ E +R+ IA L ++ +LLD P +D + D ++E LR
Sbjct: 129 HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGL 188
Query: 223 GGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
G +L E + R +VS G + G ++L
Sbjct: 189 G----------VLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 33.4 bits (77), Expect = 0.16
Identities = 27/153 (17%), Positives = 63/153 (41%), Gaps = 9/153 (5%)
Query: 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP-LNAL 110
N + ++ ++ E + ++ S L +AG + + ++ + G + L
Sbjct: 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK 70
Query: 111 KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSI--KVTTSEQMGLLIEELGLTQVL 168
R + V L P + V + F LR+ PK I +V ++ L + +L
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAEL------LQIEHLL 124
Query: 169 STRVGRLTTSELKRLSIACCLMSHADILLLDCP 201
+ +L+ + +R+++ ++ + L+D P
Sbjct: 125 DRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 33.7 bits (77), Expect = 0.17
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 109 ALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGL---LIEELGLT 165
L+R + V Q L P L V + L P + ++ + + L++ L L
Sbjct: 79 DLRRNVGMVFQQYNLWPHLTVQENLI------EAPCRVLGLSKDQALARAEKLLKRLRLK 132
Query: 166 QVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
L+ + +R++IA LM +LL D PT +D
Sbjct: 133 PYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 33.4 bits (77), Expect = 0.17
Identities = 48/214 (22%), Positives = 97/214 (45%), Gaps = 26/214 (12%)
Query: 57 VQGVSFEVKGSEVLAIM------STSALEGKAILDALAGRNDAKAFQVILNGHSIPLNAL 110
+ +SF V+ E+ ++ T+ + + IL + + +V+ +G + + A
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTI--RMILGIIL----PDSGEVLFDGKPLDI-AA 68
Query: 111 KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLST 170
+ R+ Y+ + L P++ V L + + L+ K + ++ +E L L++ +
Sbjct: 69 RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR----RRIDEWLERLELSEYANK 124
Query: 171 RVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAG 230
RV L+ +++ ++ ++L+LD P +D + L + +R A AG
Sbjct: 125 RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR------AG 178
Query: 231 KMVIL-TLQPPTYEIFTMISRVLLVSGGRTMYSG 263
K VIL T Q E + RVLL++ GR + G
Sbjct: 179 KTVILSTHQMELVE--ELCDRVLLLNKGRAVLYG 210
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 33.6 bits (77), Expect = 0.18
Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 19/198 (9%)
Query: 80 GKA-ILDALAGRNDAKAFQVILNG---HSIPLNALKRRLVYVRSQSFLSPELNVAQTLTF 135
GK+ +L LAG A V L G H + A RR+ V S + L V +
Sbjct: 39 GKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVA- 97
Query: 136 YSHLRRPPKHSIKVTTSEQMGLLIEE----LGLTQVLSTRVGRLTTSELKRLSIACCLMS 191
L R P S+ S +++ L+ + + L+ E +R+ +A L
Sbjct: 98 ---LGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQ 154
Query: 192 HADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRV 251
+LLLD PT +D+ + +R A+ G +A + L L + V
Sbjct: 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAA-LHDLNLAASYCD------HV 207
Query: 252 LLVSGGRTMYSGKRRDML 269
+++ GGR + +G R++L
Sbjct: 208 VVLDGGRVVAAGPPREVL 225
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 33.3 bits (77), Expect = 0.18
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 32/182 (17%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAF-- 96
+++R L V +K ++ +S ++ E+ A++ S GK+ +L L ND
Sbjct: 1 IELRDLNV--YYGDKHALKDISLDIPKGEITALIGPSG-CGKSTLLRLLNRLNDLIPGAP 57
Query: 97 ---QVILNGHSI-----PLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPK-HSI 147
+V+L+G I + L+RR+ V + P + Y ++ + H I
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFP-------GSIYDNVAYGLRLHGI 110
Query: 148 KVTTSEQMGLLIEELGLTQV-LSTRVG-RLTTSEL-----KRLSIACCLMSHADILLLDC 200
K E++ +EE L + L V RL L +RL +A L + ++LLLD
Sbjct: 111 K--LKEELDERVEEA-LRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDE 167
Query: 201 PT 202
PT
Sbjct: 168 PT 169
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 33.4 bits (76), Expect = 0.21
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 163 GLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFL 217
G+T + V L+ + +R IA L I+LLD PT ++DI L+E L
Sbjct: 132 GITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELL 186
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 33.2 bits (76), Expect = 0.22
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDA-LAGRND 92
L ++ L V S ++K ++G++ EV+ EV AIM + GK+ L A LAGR D
Sbjct: 2 LSIKDLHV--SVEDKAILRGLNLEVRPGEVHAIMGPNG-SGKSTLSATLAGRED 52
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 33.5 bits (77), Expect = 0.25
Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 17/170 (10%)
Query: 38 PHLQVRGLEVPPSSKNKCF-----VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRND 92
P+L + + K F ++ +S VK E + ++ S +L +AG
Sbjct: 3 PYLSIDNI-------RKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER 55
Query: 93 AKAFQVILNGHSIPLNALKRRLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTT 151
A + G I ++R + QS+ L P L VA + + R + +
Sbjct: 56 QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERV 115
Query: 152 SEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCP 201
+E L++ +GL G+L+ + +R+++A L + +LLLD P
Sbjct: 116 AE----LLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEP 161
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 33.3 bits (77), Expect = 0.26
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 21/156 (13%)
Query: 58 QGVSFEVKGSEVLAIM--STSALEGKA-ILDALAGRNDAKAFQVILNGHSIP----LNAL 110
+G+S V+ EV+ I+ S S GK+ +L L G + + + ++G + + L
Sbjct: 19 KGISLSVEKGEVVVIIGPSGS---GKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL 75
Query: 111 KRRLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSE--QMGL-LIEELGLTQ 166
+R++ V Q F L P L V + +T P K++ +E + L L+E++GL
Sbjct: 76 RRKVGMV-FQQFNLFPHLTVLENVTL------APVKVKKLSKAEAREKALELLEKVGLAD 128
Query: 167 VLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPT 202
+L+ + +R++IA L ++L D PT
Sbjct: 129 KADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPT 164
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 32.5 bits (75), Expect = 0.26
Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 45/157 (28%)
Query: 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNG-----HSI 105
K + VS ++ E++A++ S GK+ +L +AG + + ++++G
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSG-SGKSTLLRCIAGLEEPDSGSILIDGEDLTDLED 69
Query: 106 PLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT 165
L L+RR+ V L P L V + +
Sbjct: 70 ELPPLRRRIGMVFQDFALFPHLTVLENIAL------------------------------ 99
Query: 166 QVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPT 202
L+ + +R+++A L D+LLLD PT
Sbjct: 100 --------GLSGGQQQRVALARALAMDPDVLLLDEPT 128
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 32.9 bits (75), Expect = 0.26
Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 13/154 (8%)
Query: 54 KCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAF----QVILNGHSIPLNA 109
C + V+F + E++ +M S GK+ L + A F ++ LN + +
Sbjct: 15 SCLLANVNFTIAKGEIVTLMGPSGC-GKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73
Query: 110 LKRRLVYVRSQ-SFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMG-LLIEELGLTQV 167
+R + + Q + L P L+V Q L F P ++K +E GL
Sbjct: 74 AAQRQIGILFQDALLFPHLSVGQNLLF----ALPA--TLKGNARRNAANAALERSGLDGA 127
Query: 168 LSTRVGRLTTSELKRLSIACCLMSHADILLLDCP 201
L+ + R+++ L++ LLLD P
Sbjct: 128 FHQDPATLSGGQRARVALLRALLAQPKALLLDEP 161
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 33.6 bits (77), Expect = 0.27
Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 15/159 (9%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR-NDAKAFQVILNGHSIPL---NALKR 112
+ ++ ++K E + I+ S GK+ L L R + QV+++G + + L+R
Sbjct: 473 LSNLNLDIKPGEFIGIVGPSG-SGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRR 531
Query: 113 RLVYVRSQSFL---SPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEEL--GLTQV 167
++ V ++ L S N+A + P +H I I EL G
Sbjct: 532 QMGVVLQENVLFSRSIRDNIAL-----CNPGAPFEHVIHAAKLAGAHDFISELPQGYNTE 586
Query: 168 LSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
+ + L+ + +R++IA L+ + IL+ D T +D
Sbjct: 587 VGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALD 625
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 32.8 bits (75), Expect = 0.30
Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 16/151 (10%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116
++GV+ ++ E ++++ S +L+ ++G + VIL G I R +V+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 117 VRSQSF-LSPELNVAQTLTF-----YSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLST 170
Q++ L P L V + + L + + +I I +GLT+
Sbjct: 61 ---QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEH-------IALVGLTEAADK 110
Query: 171 RVGRLTTSELKRLSIACCLMSHADILLLDCP 201
R G+L+ +R++IA L +LLLD P
Sbjct: 111 RPGQLSGGMKQRVAIARALSIRPKVLLLDEP 141
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 32.9 bits (75), Expect = 0.30
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 16/61 (26%)
Query: 171 RVGRLTTSELKRLSIACCLMSHADILLLD------CPTVFMDIFD----------TFFLV 214
R G ++ E + L+I LMS +LLLD P + IFD T FLV
Sbjct: 134 RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLV 193
Query: 215 E 215
E
Sbjct: 194 E 194
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 32.7 bits (75), Expect = 0.31
Identities = 30/150 (20%), Positives = 64/150 (42%), Gaps = 9/150 (6%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIP-LNALKRRLV 115
+ VS ++ E++A++ S +L +AG + ++ G + +R +
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVG 77
Query: 116 YVRSQSFLSPELNVAQTLTFYSHLR----RPPKHSIKVTTSEQMGLLIEELGLTQVLSTR 171
+V L + V + F ++ RPP+ I+ E L++ + L +
Sbjct: 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHE----LLKLVQLDWLADRY 133
Query: 172 VGRLTTSELKRLSIACCLMSHADILLLDCP 201
+L+ + +R+++A L +LLLD P
Sbjct: 134 PAQLSGGQRQRVALARALAVEPKVLLLDEP 163
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 33.2 bits (76), Expect = 0.36
Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 13/153 (8%)
Query: 58 QGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGH---SIPLNALKRRL 114
+ +SF ++ E +AI+ S ++ L D + +++++G I L++L++R+
Sbjct: 346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405
Query: 115 VYVRSQSFL---SPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEEL--GLTQVLS 169
V L + N+A + + I L G ++
Sbjct: 406 GIVSQDPLLFSGTIRENIA-----LGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVG 460
Query: 170 TRVGRLTTSELKRLSIACCLMSHADILLLDCPT 202
R L+ + +RL+IA L+ + IL+LD T
Sbjct: 461 ERGVNLSGGQRQRLAIARALLRNPPILILDEAT 493
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 33.1 bits (76), Expect = 0.37
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 39/196 (19%)
Query: 38 PHLQVRGLEVP-PSSK--------NKCFVQGVSFEVKGSEVLAIM-------STSALEGK 81
P L V L+V P K + V+ +SF ++ E L ++ ST+ L
Sbjct: 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGL--- 330
Query: 82 AILDALAGRNDAKAFQVILNGHSIPLNALKRR-LVYVRSQ---------SFLSPELNVAQ 131
A+L + + + + +G PL+ L RR L+ VR + S L+P LNV Q
Sbjct: 331 ALLRLINSQGE-----IWFDGQ--PLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQ 383
Query: 132 TLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRV-GRLTTSELKRLSIACCLM 190
+ LR +Q+ ++EE+GL R + + +R++IA L+
Sbjct: 384 IIE--EGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALI 441
Query: 191 SHADILLLDCPTVFMD 206
+++LD PT +D
Sbjct: 442 LKPSLIILDEPTSSLD 457
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 33.3 bits (77), Expect = 0.38
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 173 GR-LTTSELKRLSIACCLMSHADILLLDCPT 202
GR L+ E +RL IA L+ A +LLLD PT
Sbjct: 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPT 503
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 32.4 bits (74), Expect = 0.39
Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 30/181 (16%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAG--RNDAKAFQVILNGHSIPL-NALKRR 113
++ VS V E +A+ S +L +L D+ V G + L A R
Sbjct: 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPRE 83
Query: 114 LVYVRSQSFLSPELNVAQTLTFYSHLRR--PPKHSIKVTTSE--QMGLLIEELGL-TQVL 168
++ VR + T+ + S R P +++V + G+ E + L
Sbjct: 84 VLEVRRK-----------TIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARAREL 132
Query: 169 STRVG---RL------TTS--ELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFL 217
R+ RL T S E +R++IA ++ ILLLD PT +D + +VE +
Sbjct: 133 LARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI 192
Query: 218 R 218
Sbjct: 193 A 193
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 32.5 bits (74), Expect = 0.40
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
Query: 139 LRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLL 198
LRRP V + + +GLT++ VG L+ + +R+ +A L + +LLL
Sbjct: 83 LRRP-----CVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLL 137
Query: 199 DCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSG 256
D P +D+ L E A AG A M L + RV+L++G
Sbjct: 138 DEPFTGLDMPTQELLTELFIELAG---AGTAILMTTHDLA----QAMATCDRVVLLNG 188
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 32.9 bits (75), Expect = 0.41
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 35/170 (20%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR-NDAKAFQVILNG---HSIPLNALKR 112
V VSFE K + +AI+ + GK L L R D Q++++G +++ +L++
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTG-AGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRK 409
Query: 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKV-----TTSEQMG----------L 157
+ V + L R + +I++ T E +
Sbjct: 410 SIATVFQDAGL---------------FNRSIRENIRLGREGATDEEVYEAAKAAAAHDFI 454
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
L G ++ R RL+ E +RL+IA ++ +A IL+LD T +D+
Sbjct: 455 LKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDV 504
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 32.7 bits (75), Expect = 0.41
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 7/154 (4%)
Query: 52 KNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR-NDAKAFQVILNGHSI---PL 107
NK V V+ ++ E L ++ S GK + R + + +++++G I
Sbjct: 12 GNKKAVDDVNLTIEEGEFLVLIGPSG-SGKTTTLKMINRLIEPTSGEILIDGEDISDLDP 70
Query: 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV 167
L+R++ YV Q L P L VA+ + L K IK E + L+ L ++
Sbjct: 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLV--GLDPSEY 128
Query: 168 LSTRVGRLTTSELKRLSIACCLMSHADILLLDCP 201
L+ + +R+ +A L + ILL+D P
Sbjct: 129 ADRYPHELSGGQQQRVGVARALAADPPILLMDEP 162
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 32.7 bits (75), Expect = 0.43
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 14/150 (9%)
Query: 58 QGVSFEVKGSEVLAIMSTSALEGKAIL-DALAGRNDAKAFQVILNGHSI----PLNALKR 112
+G+ F + EV A++ + GK+ L +AG + + + G+ P A +
Sbjct: 28 KGIDFTLHAGEVHALLGGNG-AGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL 86
Query: 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRV 172
+ V + L P L+V + + F PK + ++M L+ LG L +
Sbjct: 87 GIYLVPQEPLLFPNLSVKENILF-----GLPKRQ---ASMQKMKQLLAALGCQLDLDSSA 138
Query: 173 GRLTTSELKRLSIACCLMSHADILLLDCPT 202
G L ++ + + I LM + IL+LD PT
Sbjct: 139 GSLEVADRQIVEILRGLMRDSRILILDEPT 168
Score = 30.4 bits (69), Expect = 2.6
Identities = 50/220 (22%), Positives = 87/220 (39%), Gaps = 22/220 (10%)
Query: 60 VSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSI----PLNALKRRLV 115
+S EV+ E+L + + + L G A+ +++LNG I L R LV
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341
Query: 116 YV---RSQSFLSPELNVAQTLTFYSHLRRP----PKHSIKVTTSEQMGLLIEELGLTQVL 168
Y+ R S L + +A + +H RR P V + L I+ Q
Sbjct: 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA- 400
Query: 169 STRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGM 228
L+ +++ IA CL + +L++D PT +D+ + + +R A+ A
Sbjct: 401 ---ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVA-- 455
Query: 229 AGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268
+L + EI M RVL++ G + +
Sbjct: 456 -----VLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 32.2 bits (74), Expect = 0.48
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 13/151 (8%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR-NDAKAFQVILNGHSI------PLNA 109
V VS +V+ E+ IM S GK+ L R + + +V+++G I L
Sbjct: 40 VNDVSLDVREGEIFVIMGLSG-SGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRE 98
Query: 110 LKRRLVYVRSQSF-LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVL 168
L+R+ + + QSF L P V + + F ++ P+ + +E +E +GL
Sbjct: 99 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEA----LELVGLEGWE 154
Query: 169 STRVGRLTTSELKRLSIACCLMSHADILLLD 199
L+ +R+ +A L DILL+D
Sbjct: 155 HKYPDELSGGMQQRVGLARALAVDPDILLMD 185
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 31.6 bits (73), Expect = 0.50
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSI---PLNALKR 112
++ VS +K E +AI+ S GK+ +L L D + +++++G + L +L++
Sbjct: 18 LKDVSLTIKPGEKVAIVGPSG-SGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK 76
Query: 113 RLVYVRSQSFL 123
+ YV FL
Sbjct: 77 NIAYVPQDPFL 87
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 32.1 bits (73), Expect = 0.58
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 22/181 (12%)
Query: 46 EVPPSSKNKCFVQGVSFEVKGSEVLAIMSTS-------AL-----EGKAILDALAGRND- 92
E S ++ VSF V G +L +S + L GK+ L + GR+
Sbjct: 3 EYTNHSDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP 62
Query: 93 AKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYS--HLRRPPKHS---- 146
+++L+ PL + + + R ++L +L A+ +T + R P H
Sbjct: 63 PSEGEILLDAQ--PLESWSSKA-FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGR 119
Query: 147 IKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
E++ I +GL + V L+ E +R IA + + LLLD PT +D
Sbjct: 120 FGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
Query: 207 I 207
I
Sbjct: 180 I 180
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 31.9 bits (72), Expect = 0.62
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 159 IEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLR 218
+ +G+ RV L+ + +R++IA LM A ++L D P +D +++ LR
Sbjct: 137 LTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLR 196
Query: 219 GWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSG 263
G V++TL Y + R++ + G Y G
Sbjct: 197 DINQND-----GITVVVTLHQVDYAL-RYCERIVALRQGHVFYDG 235
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 32.2 bits (74), Expect = 0.64
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 171 RVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
+VG+L+ E R+ +A L S ++LLLD PT +D+
Sbjct: 440 KVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV 476
Score = 29.1 bits (66), Expect = 6.1
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 170 TRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWA 221
V +L+ E +R+++ L+S D+LLLD PT +D +L + L+ +
Sbjct: 157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP 208
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 31.6 bits (71), Expect = 0.97
Identities = 44/179 (24%), Positives = 87/179 (48%), Gaps = 32/179 (17%)
Query: 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKA----ILDALAGRNDAKAF---QVILNGHSI 105
+K ++ ++ ++ + + IM S GK+ +L+ L D+K +V+ G I
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSG-SGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDI 80
Query: 106 -PLNALKRR----LVYVRSQSFLSPELNVAQTLTFYSHLRRPPK-HSIKVTTSEQMGLLI 159
++A+K R +V+ + F P L++ Y ++ P K H IK ++ ++
Sbjct: 81 FQIDAIKLRKEVGMVFQQPNPF--PHLSI------YDNIAYPLKSHGIK--EKREIKKIV 130
Query: 160 EE----LGLTQVLSTRV----GRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDT 210
EE +GL + + R+ +L+ + +RL+IA L +LL+D PT +DI ++
Sbjct: 131 EECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNS 189
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 31.0 bits (71), Expect = 1.0
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 19/153 (12%)
Query: 58 QGVSFEVKGSEVLAIMSTSALEGKAILDALAGR-NDAKAFQVILNGHSI---PLNALKRR 113
+ VSF + + +AI+ S GK+ + L R D + ++++G I L++L+R
Sbjct: 18 KDVSFTIPAGKKVAIVGPSG-SGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRA 76
Query: 114 LVYVRSQSFL---SPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLST 170
+ V + L + N+ Y + I+ + Q+ I + T
Sbjct: 77 IGVVPQDTVLFNDTIGYNIR-----YGRPDATDEEVIEAAKAAQIHDKI--MRFPDGYDT 129
Query: 171 RVG----RLTTSELKRLSIACCLMSHADILLLD 199
VG +L+ E +R++IA ++ + ILLLD
Sbjct: 130 IVGERGLKLSGGEKQRVAIARAILKNPPILLLD 162
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 30.9 bits (70), Expect = 1.1
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 175 LTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGG 224
L+ E KR++IA + D+LLLD PT +D ++ LR + G
Sbjct: 128 LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEG 177
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 31.1 bits (71), Expect = 1.1
Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 21/176 (11%)
Query: 58 QGVSFEVKGSEVLAIMSTSALEGKAILDALAG------RNDAKAFQVILNGHSIP-LNAL 110
++ E+ E++ I++ + GK L L G K L G S L L
Sbjct: 22 FDINLEINPGEIV-ILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80
Query: 111 KRRLVYVRSQS-----FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLT 165
+R + Y+ Q+ FL+ NV L +L + M +E +GL
Sbjct: 81 RRNIGYI-FQAHNLLGFLTARQNVQMALELQPNLSYQEARE----RARAM---LEAVGLG 132
Query: 166 QVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWA 221
L L+ + +R++IA L+ ++L D PT +D +VE ++ A
Sbjct: 133 DHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLA 188
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 31.5 bits (72), Expect = 1.1
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFL 217
L ++ G+T +L R L+T E ++ + LMS D+L+LD P +D+ L E L
Sbjct: 119 LAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELL 178
Query: 218 RGWASGG 224
G
Sbjct: 179 ASLHQSG 185
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 31.6 bits (72), Expect = 1.2
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
L++ LGL + + +L+ + +R+SIA LM+ ++L D PT +D
Sbjct: 128 LLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 30.7 bits (70), Expect = 1.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 182 RLSIACCLMSHADILLLDCPTVFMD 206
RL++A S+ IL LD PT +D
Sbjct: 129 RLALAETFGSNCGILALDEPTTNLD 153
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 30.8 bits (70), Expect = 1.4
Identities = 48/191 (25%), Positives = 75/191 (39%), Gaps = 21/191 (10%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGH---SIPLNALKRR 113
+ GVS +++ EVLAI+ + +L AL+G + +V LNG S P L R
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76
Query: 114 LVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV--LSTR 171
+ S L+ V + + R P H E + + L T + L+ R
Sbjct: 77 RAVLPQNSSLAFPFTVQEVVQMG---RIP--HRSGREPEEDERIAAQALAATDLSGLAGR 131
Query: 172 VGR-LTTSELKRLSIACCL------MSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGG 224
R L+ E +R+ +A L + L LD PT +DI + R A G
Sbjct: 132 DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREG 191
Query: 225 PAGMAGKMVIL 235
+ +L
Sbjct: 192 ----GAVLAVL 198
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 30.4 bits (69), Expect = 1.9
Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL---NA 109
K + +S + ++ A++ + +L A ++ V L I +
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73
Query: 110 LKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSI--KVTTSEQMGL--LIEELGLT 165
L RRL + Q L+PE + L Y R P S+ +++ + + +E+ +
Sbjct: 74 LARRLALL-PQHHLTPEGITVRELVAYG---RSPWLSLWGRLSAEDNARVNQAMEQTRIN 129
Query: 166 QVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
+ R+ L+ + +R +A L ++LLD PT ++DI
Sbjct: 130 HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI 171
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 30.5 bits (69), Expect = 2.0
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 16/130 (12%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVI 99
+ +RG+ + N+C +S V ++ AIM S + +L + G+ +++
Sbjct: 8 VDMRGVSF--TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL 65
Query: 100 LNGHSIPLNALKR-RLVYVR---SQSFLSPEL--------NVAQTLTFYSHLRRPPKHSI 147
+G +IP A+ R RL VR S F S L NVA L ++ L P HS
Sbjct: 66 FDGENIP--AMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHST 123
Query: 148 KVTTSEQMGL 157
+ E +GL
Sbjct: 124 VMMKLEAVGL 133
>gnl|CDD|222800 PHA00458, PHA00458, single-stranded DNA-binding protein.
Length = 233
Score = 30.1 bits (68), Expect = 2.1
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 270 PYFAAADYPCPAFKNP-SDYYLDL-VTLDDLSAEAMLESSQRIEQLSELFRRREEPLSDP 327
Y A D+ F NP Y + L V+ DD + M++ + + EE ++P
Sbjct: 20 AYIAKPDFGNEGFFNPRGVYKVSLTVSNDDPRCQKMIDEIVKAHE-ENYAAALEEYEANP 78
Query: 328 P 328
P
Sbjct: 79 P 79
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 30.3 bits (68), Expect = 2.3
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 168 LSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFL 217
L T+ L+ + +RL IA L ++ D+LL+D PT +D T + E +
Sbjct: 149 LHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELI 198
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 30.0 bits (68), Expect = 2.4
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 64 VKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSF- 122
V E++AI+ S +L+ +AG + ++++NG + R V + Q
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENN 81
Query: 123 LSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGL--LIEELGLTQVLSTRVGRLTTSEL 180
L L VAQ + L P +K+ ++ + ++GL L G L+ +
Sbjct: 82 LFAHLTVAQNIG----LGLSP--GLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQR 135
Query: 181 KRLSIACCLMSHADILLLDCP 201
+R+++A CL+ ILLLD P
Sbjct: 136 QRVALARCLVREQPILLLDEP 156
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 29.9 bits (68), Expect = 2.6
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAF 96
P L VRGL + C + VSF++ EVL I+ S GK +L+AL+ R A
Sbjct: 5 PLLSVRGLTKLYGPRKGC--RDVSFDLYPGEVLGIVGESG-SGKTTLLNALSARLAPDAG 61
Query: 97 QVI 99
+V
Sbjct: 62 EVH 64
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 29.7 bits (67), Expect = 2.8
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFL 217
++ + LT + + + +RL IA L++H +L+LD PT +D L E +
Sbjct: 108 VLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELI 167
Query: 218 RGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264
R + G + ++ E+ + + ++S G Y GK
Sbjct: 168 RSFPEQG-------ITVILSSHILSEVQQLADHIGIISEGVLGYQGK 207
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 30.1 bits (67), Expect = 2.9
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 159 IEELGLTQVLSTRVG----RLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLV 214
+ E+GL + R+ RL+ + + L +A L + ++LLLD PT +D T +
Sbjct: 144 LTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIE 203
Query: 215 EFLRGWA 221
EF+R A
Sbjct: 204 EFIRSLA 210
>gnl|CDD|225184 COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport
and metabolism].
Length = 283
Score = 29.6 bits (67), Expect = 3.5
Identities = 22/94 (23%), Positives = 29/94 (30%), Gaps = 12/94 (12%)
Query: 145 HSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSEL----KRLSIACCLMSHADILLLDC 200
I + +GL L L R T L + +A A + +D
Sbjct: 128 EEIAAASGRLVGLAFGANDLAADLGARRSPDGTDPLRYARAMIVLAARA---AGLAAID- 183
Query: 201 PTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVI 234
V+ DI D F R A G GK I
Sbjct: 184 -GVYTDIND---PEGFAREAAQAAALGFDGKTCI 213
>gnl|CDD|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional.
Length = 1634
Score = 30.3 bits (68), Expect = 3.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 473 LYIQGPDTEAFYIYVGLVIPAYAMSGLYIQGPDTEAF 509
L++ G D F++ G+V YA G I G + F
Sbjct: 1323 LWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNASVHF 1359
>gnl|CDD|184936 PRK14973, PRK14973, DNA topoisomerase I; Provisional.
Length = 936
Score = 29.8 bits (67), Expect = 3.9
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 254 VSGGRTMYSGKRRDMLPYFAAADYPCPAFKNPSDYYLDLVTLDDLSAE--AMLESSQRIE 311
+GGR + +G R + PY A + PAF + V L++ + A S+ I+
Sbjct: 417 ATGGRLLEAGWRT-VYPYSEAKENILPAFALGEKLPILAVNLEEKETQPPARYSQSRLIQ 475
Query: 312 QLSEL 316
++ EL
Sbjct: 476 RMEEL 480
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 29.9 bits (67), Expect = 4.1
Identities = 47/233 (20%), Positives = 91/233 (39%), Gaps = 45/233 (19%)
Query: 48 PPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPL 107
PP+ + G++F + ++A++ ++L AL D + GH
Sbjct: 651 PPT------LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK------VEGHV--- 695
Query: 108 NALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV 167
+K + YV Q+++ + + + + + E LL + L
Sbjct: 696 -HMKGSVAYVPQQAWI--QNDSLRENILFGKALNEKYYQ---QVLEACALLPDLEILPSG 749
Query: 168 LSTRVGR----LTTSELKRLSIACCLMSHADILLLDCPTVFMD------IFDTFFLVEFL 217
T +G L+ + +R+S+A + S+ADI L D P +D IF+
Sbjct: 750 DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVI----- 804
Query: 218 RGWASGGPAGM-AGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
GP G+ K IL +Y + ++++SGG+ G +++L
Sbjct: 805 ------GPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKISEMGSYQELL 849
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 29.4 bits (66), Expect = 4.5
Identities = 40/224 (17%), Positives = 97/224 (43%), Gaps = 26/224 (11%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKRRLVY 116
++G++ +K EV AI+ + + L G + +++ +G P++ ++ L+
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGK--PIDYSRKGLMK 79
Query: 117 VRSQ---SFLSPE-----LNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVL 168
+R F P+ +V Q ++F + + P+ ++ +++ ++ G+ +
Sbjct: 80 LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVR----KRVDNALKRTGIEHLK 135
Query: 169 STRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGM 228
L+ + KR++IA L+ +L+LD PT +D +++ L
Sbjct: 136 DKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE----- 190
Query: 229 AGKMVILTLQPPTYEIFTM---ISRVLLVSGGRTMYSGKRRDML 269
+ LT+ T++I + V ++ GR + G +++
Sbjct: 191 ----LGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 29.3 bits (66), Expect = 4.7
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGR 90
P L V GL C + VSF++ EVL I+ S +L ++GR
Sbjct: 5 PLLSVSGLSKLYGPGKGC--RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR 55
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 29.7 bits (67), Expect = 4.9
Identities = 39/218 (17%), Positives = 89/218 (40%), Gaps = 18/218 (8%)
Query: 60 VSFEVKGSEVLAIMSTSALEGKAIL-DALAGRNDAKAFQVILNGHS---IPLNALKRRLV 115
+S +K + I+ S GK+ L L G A++ +++LNG S I + L++ +
Sbjct: 493 ISLTIKMNSKTTIVGMSG-SGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551
Query: 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEE--LGLTQVLSTRVG 173
Y+ + ++ ++ + L + ++ IE LG LS
Sbjct: 552 YLPQEPYIFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS 610
Query: 174 RLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMV 233
++ + +R+++A L++ + +L+LD T +D +V L + K +
Sbjct: 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL--------LNLQDKTI 662
Query: 234 ILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPY 271
I + +++++ G+ + G ++L
Sbjct: 663 IFVAH--RLSVAKQSDKIIVLDHGKIIEQGSHDELLDR 698
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 29.1 bits (65), Expect = 5.2
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 175 LTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLR 218
L+ + +RL IA CL D++L+D PT +D T + E ++
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQ 211
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 29.1 bits (65), Expect = 5.3
Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 18/168 (10%)
Query: 61 SFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLN-ALKRRLVYVRS 119
SF V G + A++ + + AL G + ++ + G P AL++ LV
Sbjct: 27 SFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILG--QPTRQALQKNLVAYVP 84
Query: 120 QS----FLSPELNVAQTLTF--YSH---LRRPPKHSIKVTTSEQMGLLIEELGLTQVLST 170
QS + P L V + Y H LRR K ++ T+ + + + +
Sbjct: 85 QSEEVDWSFPVL-VEDVVMMGRYGHMGWLRRAKKRDRQIVTAA-----LARVDMVEFRHR 138
Query: 171 RVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLR 218
++G L+ + KR+ +A + ++LLD P +D+ ++ LR
Sbjct: 139 QIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLR 186
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 29.2 bits (66), Expect = 5.9
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 33 RPEFFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAIL 84
P+ L V L P + K ++G+SF ++ E L I+ S GK+ L
Sbjct: 330 APQG--ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSG-SGKSTL 378
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 29.0 bits (65), Expect = 6.0
Identities = 32/153 (20%), Positives = 71/153 (46%), Gaps = 17/153 (11%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAIL-DALAGRNDAKAFQVILNGHSI-----PLNAL 110
V+ VSF ++ + LAI+ + GK+ L LAG + + ++++N H + +
Sbjct: 29 VKPVSFTLREGQTLAIIGENG-SGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSK 87
Query: 111 KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVL-- 168
+ R+++ + L+P L + Q L F P + + + ++ + E L + +L
Sbjct: 88 RIRMIFQDPNTSLNPRLRIGQILDF------PLRLNTDLEPEQRRKQIFETLRMVGLLPD 141
Query: 169 --STRVGRLTTSELKRLSIACCLMSHADILLLD 199
+ L + +R+++A L+ I++ D
Sbjct: 142 HANYYPHMLAPGQKQRVALARALILRPKIIIAD 174
>gnl|CDD|182066 PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific
transporter subunit IIABC; Provisional.
Length = 631
Score = 29.3 bits (66), Expect = 6.4
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 336 KIGSASPLRQVFALFLRQMA-YSQPSSLLNWLSQLLIATILSVIIGCIFW 384
IG ++P +F+LFL + + W L+ +S I + W
Sbjct: 573 NIGLSTPGAGIFSLFLLHDNGAGGVMAAIGWFGAALVGAAISTAI-LLIW 621
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 28.9 bits (65), Expect = 7.6
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 35/162 (21%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRN-DAKAFQVILNGHSIP---LNALKR 112
++ V+F +K ++L I + GK+ L +L R+ D + + + L++ +
Sbjct: 331 LENVNFTLKPGQMLGICGPTG-SGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389
Query: 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEE----------- 161
RL V FL + VA + L RP T ++ IE
Sbjct: 390 RLAVVSQTPFLFSD-TVANNIA----LGRPD------ATQQE----IEHVARLASVHDDI 434
Query: 162 LGLTQVLSTRVGR----LTTSELKRLSIACCLMSHADILLLD 199
L L Q T VG L+ + +R+SIA L+ +A+IL+LD
Sbjct: 435 LRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILD 476
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 28.6 bits (64), Expect = 7.9
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 162 LGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLR 218
LGL ++ L+ E KR++IA + +L+LD PT +D L++FL
Sbjct: 125 LGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN 181
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 28.5 bits (64), Expect = 8.1
Identities = 17/71 (23%), Positives = 27/71 (38%)
Query: 153 EQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFF 212
++ L+ +GL L+ + + L I L +LLLD P M +T
Sbjct: 126 RRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEK 185
Query: 213 LVEFLRGWASG 223
E L+ A
Sbjct: 186 TAELLKSLAGK 196
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 28.7 bits (65), Expect = 8.4
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 161 ELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
GL + + L+ + +RL++A L+ +LLLD PT +D
Sbjct: 472 PQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLD 517
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 28.8 bits (65), Expect = 8.4
Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 37/170 (21%)
Query: 57 VQGVSFEVKGSEVLAIM-STSALEGKAILDALAGR-NDAKAFQVILNG---HSIPLNALK 111
V+ VSFE K + +AI+ T A GK+ L L R D ++ +++++G ++ +L+
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGA--GKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLR 408
Query: 112 RRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKV----TTSEQMGL---------L 158
R + V F L R + +I+V T E+M
Sbjct: 409 RNIAVV----FQDAGL-----------FNRSIEDNIRVGRPDATDEEMRAAAERAQAHDF 453
Query: 159 IE--ELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
IE G V+ R +L+ E +RL+IA L+ IL+LD T +D
Sbjct: 454 IERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALD 503
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 28.5 bits (64), Expect = 8.7
Identities = 34/162 (20%), Positives = 71/162 (43%), Gaps = 13/162 (8%)
Query: 58 QGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLN--------- 108
+GVS + +V++I+ +S L + A + +NG I L
Sbjct: 23 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82
Query: 109 ALKRRLVYVRSQ-SFLSPELNVAQTLTFYSHLRRPPKHSIKVTTS---EQMGLLIEELGL 164
A KR+L +R++ + N+ +T ++ P H + V+ + E+ + ++G+
Sbjct: 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGI 142
Query: 165 TQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
+ L+ + +R++IA L +++L D PT +D
Sbjct: 143 AEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALD 184
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 28.7 bits (64), Expect = 8.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 182 RLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGW 220
R+++A L D+LLLD PT +D+ +L +L W
Sbjct: 352 RIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW 390
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 28.6 bits (64), Expect = 9.1
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 182 RLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGW 220
RL++A L+ +D+LLLD PT +D+ +L ++L+ +
Sbjct: 157 RLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY 195
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 28.4 bits (63), Expect = 9.4
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 106 PLNALKRRLVYVRSQS---FLSPELNVAQTLTFYSHLRRPPKHSIK---VTTSEQMGLLI 159
PL+ KR L+ +R Q F PE + FY+ + S++ V +E +
Sbjct: 64 PLDYSKRGLLALRQQVATVFQDPEQQI-----FYTDIDSDIAFSLRNLGVPEAEITRRVD 118
Query: 160 EELGLTQVLSTR---VGRLTTSELKRLSIACCLMSHADILLLDCPTVFMD 206
E L L R + L+ + KR++IA L+ A LLLD PT +D
Sbjct: 119 EALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLD 168
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 28.5 bits (64), Expect = 9.4
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 33 RPEFFPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAIL 84
PE HL V + + P K ++G+SF ++ E LAI+ S GK+ L
Sbjct: 312 EPEG--HLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSG-SGKSTL 360
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 27.9 bits (63), Expect = 9.8
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGK-AILDALAGRNDAKAF-- 96
L+++ L V S K ++GV+ +K EV A+M + GK + + G +
Sbjct: 1 LEIKDLHV--SVGGKEILKGVNLTIKKGEVHALMGPNG-SGKSTLAKTIMGHPKYEVTEG 57
Query: 97 QVILNGHSI 105
+++ G I
Sbjct: 58 EILFKGEDI 66
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.419
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,771,985
Number of extensions: 2685129
Number of successful extensions: 3807
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3685
Number of HSP's successfully gapped: 253
Length of query: 515
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 414
Effective length of database: 6,457,848
Effective search space: 2673549072
Effective search space used: 2673549072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)