RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10236
(515 letters)
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 67.2 bits (165), Expect = 1e-12
Identities = 42/236 (17%), Positives = 87/236 (36%), Gaps = 44/236 (18%)
Query: 57 VQGVSFEVKGSEVLAIM-------STSALEGKAILDALAGRNDAKAFQVILNGHSI---- 105
++ +S+++ + + +T +L+ L A + V L G
Sbjct: 37 LKKISWQIAKGDKWILYGLNGAGKTT-------LLNILNAYEPATSGTVNLFGKMPGKVG 89
Query: 106 -PLNALKRRLVYVRSQSF---LSPELNVAQTLT--FYSHLRRPPKHSIKVTTSEQMGL-- 157
+++ + +V S S V + + + + E
Sbjct: 90 YSAETVRQHIGFV-SHSLLEKFQEGERVIDVVISGAFKSIGVY-----QDIDDEIRNEAH 143
Query: 158 -LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEF 216
L++ +G++ +G L+T E +R+ IA LM +L+LD P +D L+
Sbjct: 144 QLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSI 203
Query: 217 LRGWASGGPAGMAGKMVILT---LQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
L + P +I ++ EI S++LL+ G+++ G D+L
Sbjct: 204 LDSLSDSYP----TLAMIYVTHFIE----EITANFSKILLLKDGQSIQQGAVEDIL 251
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 60.2 bits (147), Expect = 2e-10
Identities = 33/196 (16%), Positives = 77/196 (39%), Gaps = 40/196 (20%)
Query: 57 VQGVSFEVKGSEVLA--------------IMSTSALEGKAILDALAGRNDAKAFQVILNG 102
++G+SFE++ E+ I+ST ++ +G V + G
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST-------LIKPSSGI-------VTVFG 76
Query: 103 HSIPLNAL--KRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIE 160
++ ++ + Y+ ++ + + L F + I+ E + E
Sbjct: 77 KNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIE----EMVERATE 132
Query: 161 ELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGW 220
GL + + RV + +++L IA LM + + +LD PT +D+ + + + L+
Sbjct: 133 IAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 192
Query: 221 ASGGPAGMAGKMVILT 236
+ G ++++
Sbjct: 193 SQ------EGLTILVS 202
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 57.9 bits (141), Expect = 9e-10
Identities = 36/236 (15%), Positives = 90/236 (38%), Gaps = 44/236 (18%)
Query: 40 LQVRGLEVPPSSK--NKCFVQGVSFEVKGSEVLAIM-------ST--SALEGKAILDALA 88
L++R L S +K ++ ++ ++ V+ +T + L L
Sbjct: 11 LEIRDL-----SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST--YLKPLK 63
Query: 89 GRNDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIK 148
G ++I NG I +K ++ ++ + + +++V L + L + +
Sbjct: 64 G-------EIIYNGVPI--TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE 114
Query: 149 VTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIF 208
+ +E + + + ++G L+ ++R+ +A L+ +A+I +LD P V +D
Sbjct: 115 IMD------ALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 167
Query: 209 DTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGK 264
+++ + +VI++ + E + + T K
Sbjct: 168 SKHKVLKSILEILK------EKGIVIIS----SREELSYCDVNENLHKYSTKIDKK 213
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 60.0 bits (146), Expect = 9e-10
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 22/166 (13%)
Query: 45 LEVPPSSKNKCF--VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILN 101
+E P K+ ++ E++ EV+ I+ + + GK + LAG + +V +
Sbjct: 358 VEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGI-GKTTFVKMLAGVEEPTEGKVEWD 416
Query: 102 GHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEE 161
+ Y E V + L+ S K+ ++ L++
Sbjct: 417 L----------TVAYKPQYIKAEYEGTVYELLS--------KIDSSKLNSNFYKTELLKP 458
Query: 162 LGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
LG+ + V L+ EL+R++IA L+ ADI LLD P+ ++D+
Sbjct: 459 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDV 504
Score = 45.0 bits (107), Expect = 5e-05
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 158 LIEELGLTQVLSTRVGRLTTS--ELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVE 215
+++EL L VL + +L S EL+R++IA L+ A D P+ ++DI +
Sbjct: 212 VVKELELENVLDRELHQL--SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR 269
Query: 216 FLRGWASGGPA------------GMAGKMVILTLQPPTYEIFTM 247
+R A+ G A ++ + ++ +P Y IF+
Sbjct: 270 VIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSK 313
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 8e-08
Identities = 69/463 (14%), Positives = 129/463 (27%), Gaps = 169/463 (36%)
Query: 100 LNGHSI-PLNALKRRLVY--VRSQSFLSPELN--VAQTL--TFYSHLRRPPKHSIKV-TT 151
++ +S PL L + + L P + +A L F L P +
Sbjct: 1 MDAYSTRPLT-----LSHGSLE-HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP 54
Query: 152 SEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTF 211
+ L+ + LG +S ++ + +L L + F+
Sbjct: 55 TTPAELVGKFLGYV-----------SSLVEPSKVG----QFDQVLNL-----CLTEFENC 94
Query: 212 FLVEFLRGWASGGPAGMAGK---MVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDM 268
+L G + L ++ + + +
Sbjct: 95 YL---------------EGNDIHALAAKLLQENDTTLVKTKELI-----KNYITARIMAK 134
Query: 269 LPY--------FAAAD------YPCPAFK---NPSDYYLDLVTL--------DDL---SA 300
P+ F A F N DY+ +L L DL SA
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAI--FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 301 EAMLESSQRIEQLSELFRRR-------EEPLSDPPLPHLL-----IPKIGSASPLRQV-- 346
E + E + ++F + E P + P +LL P IG + Q+
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG----VIQLAH 248
Query: 347 FALFLRQMAYSQPSSLLNWLS-------QLLIATILSV-------------IIGCIFW-- 384
+ + + + ++ P L ++L L+ A ++ I +F+
Sbjct: 249 YVVTAKLLGFT-PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 385 ----------DVPSSDSQLLLNDRFGYHYTIMCLASWPLLIWLSMARCHGHDRAAVESDI 434
+P S + L + G + S P M + V+ +
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEG-------VPS-P------MLSISNLTQEQVQDYV 353
Query: 435 ----KDGLYSRAVYI--------IVMLCCSIPASLIIWLGLVI 465
+ V I +V P SL GL +
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKNLV--VSGPPQSLY---GLNL 391
Score = 44.3 bits (104), Expect = 1e-04
Identities = 71/491 (14%), Positives = 139/491 (28%), Gaps = 207/491 (42%)
Query: 2 LHMSQTHLHDRAASALSHSHLDGGAPSF-----QSGRPEFFPHLQ--------------- 41
M++ ++ SAL + +G A Q ++F L+
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK 189
Query: 42 -----VRGLEVPPSSKNKCFVQG-----------------------VSF----------- 62
+ L K F QG +S
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249
Query: 63 ----EVKG---SEVLAIMSTSALEGKAILDAL--AGRNDAKAFQVILNGHSIPLNALKRR 113
++ G E+ + + + + ++ A+ A + ++F A+
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF------FVSVRKAI-TV 302
Query: 114 LVY--VRSQ-SFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLST 170
L + VR ++ P ++ ++ S +++ V + M L I L QV
Sbjct: 303 LFFIGVRCYEAY--PNTSLPPSILEDS-----LENNEGVPSP--M-LSISNLTQEQVQD- 351
Query: 171 RVGRLTTS--ELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGM 228
V + + K++ I+ L++ V SG P +
Sbjct: 352 YVNKTNSHLPAGKQVEIS----------LVNGAKNL---------V------VSGPPQSL 386
Query: 229 AGKMVILTLQ----PPTYEIFTMISRVLLVSGGRTMYSGKRRDM-----LPYFAAADYPC 279
G + LTL+ P + SR+ +S +R+ LP + P
Sbjct: 387 YG--LNLTLRKAKAPSGLD----QSRIP--------FS-ERKLKFSNRFLPVAS----P- 426
Query: 280 PAFKNPSDYYL----DLVTLDDLSAEAMLESSQRIEQLSELFRRREEPLSDPPLPHLLIP 335
F + L DL+ D + + + IP
Sbjct: 427 --FHSH---LLVPASDLINKDLVKNNVSFNAKD-----------------------IQIP 458
Query: 336 KIGSASPLRQVFALF----LRQMAYSQPSSLLNWLSQLLIATILSVIIGCIFWD--VPSS 389
V+ F LR ++ S +++ + I + W+
Sbjct: 459 ----------VYDTFDGSDLRVLSGSISERIVDCI-----------IRLPVKWETTTQFK 497
Query: 390 DSQLLLNDRFG 400
+ +L D FG
Sbjct: 498 ATHIL--D-FG 505
Score = 39.6 bits (92), Expect = 0.003
Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 30/135 (22%)
Query: 15 SALSHSHLDGGAPSFQSGRPEFFPHLQV---RGL----EVPPSSKNKCFVQGVSFEVKGS 67
+AL+ S +S ++V RG+ VP + ++ +
Sbjct: 1768 AALASL---ADVMSIESL-------VEVVFYRGMTMQVAVPRDELGRSNYGMIA--INPG 1815
Query: 68 EVLAIMSTSALEGKAILDALAGR--------ND-AKAFQVILNGHSIPLNALKRRLVYVR 118
V A S AL+ +++ + R N + Q + G L+ + L +++
Sbjct: 1816 RVAASFSQEALQ--YVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK 1873
Query: 119 SQSFLSPELNVAQTL 133
Q EL + +L
Sbjct: 1874 LQKIDIIELQKSLSL 1888
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 9e-08
Identities = 76/517 (14%), Positives = 151/517 (29%), Gaps = 171/517 (33%)
Query: 4 MSQTHLHDRAASALS------HSHLDGGAPSFQSG---RPEFFPHLQVRG--LEVPPSSK 52
MS R S ++ L F R + P+L++R LE+ P+
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ--PYLKLRQALLELRPAKN 152
Query: 53 NKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNALKR 112
+ GV GS GK + + Q ++
Sbjct: 153 --VLIDGV----LGS------------GKTWVALDVCLSYK--VQCKMDFK--------- 183
Query: 113 RLVY---VRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLS 169
++ +++ + SPE + + P + + S + L I +
Sbjct: 184 --IFWLNLKNCN--SPETVLEMLQKLLYQID--PNWTSRSDHSSNIKLRIHSI------- 230
Query: 170 TRVGRLTTSELKRLSIACCLMSHADILL-LDCPTVFMDIFDTFFLVEFLRGWASGGPAGM 228
+EL+RL + + LL L ++ + F +
Sbjct: 231 -------QAELRRL---LKSKPYENCLLVLL------NVQNAKAWNAF----------NL 264
Query: 229 AGKMVILT--------LQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFAAADYPCP 280
+ K+++ T L T ++ S T ++
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHH----SMTLT-----PDEVKSLLLK------ 309
Query: 281 AFKNPSDYYLDLVTLDDLSAEAMLESSQRIEQLSELFRRREEPLSDPPLPHLLIPKIGSA 340
YLD DL E + + +R+ ++E R + + H+ K
Sbjct: 310 --------YLD-CRPQDLPREVLTTNPRRLSIIAESIR--DGLATWDNWKHVNCDK---- 354
Query: 341 SPLRQVFALFLRQMAYSQPSSLLNWLSQLLI----ATILSVIIGCIFW-DVPSSDSQLLL 395
L + L + +P+ +L + A I ++++ + W DV SD +++
Sbjct: 355 --LTTIIESSLNVL---EPAEYRKMFDRLSVFPPSAHIPTILL-SLIWFDVIKSDVMVVV 408
Query: 396 NDRFGYHYTIMCLASWPLLIWLSMARCHGHDRAAVESDIKDGLYS-RAVYIIVMLCCSIP 454
N H + VE K+ S ++Y+ + +
Sbjct: 409 NK------------------------LH--KYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 455 ASL--IIWLGLVIPAYAMSGLYIQ---GPDTEAFYIY 486
+L I + Y + + P Y Y
Sbjct: 443 YALHRSI-----VDHYNIPKTFDSDDLIPPYLDQYFY 474
Score = 36.0 bits (82), Expect = 0.030
Identities = 33/205 (16%), Positives = 64/205 (31%), Gaps = 67/205 (32%)
Query: 264 KRRDMLPYFAAA---DYPCPAFKNPSDYYLDLVTLDDLSAEAMLESSQRIEQLSELF--- 317
+ +D+L F A ++ C K+ D +++ +++ + ++ S + LF
Sbjct: 17 QYKDILSVFEDAFVDNFDC---KDVQDMPKSILSKEEI--DHIIMSKDAVSGTLRLFWTL 71
Query: 318 -------------------------RRREEPLSDPPLPHLLIPKIGSASPLR---QVFA- 348
+ E P + + I L QVFA
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-QPSMMTRMY--IEQRDRLYNDNQVFAK 128
Query: 349 LFL-RQMAYSQPSSLLNWLSQLLIATILSV--IIGC----IFWDVPSSDSQLLLNDRFGY 401
+ R Y + L L +L A + + ++G + DV S D F
Sbjct: 129 YNVSRLQPYLK---LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD-FKI 184
Query: 402 HYTIMCLASWPLLIWLSMARCHGHD 426
WL++ C+ +
Sbjct: 185 F-------------WLNLKNCNSPE 196
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 53.5 bits (129), Expect = 1e-07
Identities = 33/163 (20%), Positives = 59/163 (36%), Gaps = 32/163 (19%)
Query: 52 KNKCFVQGVSFEVKGSEVLAIM-------STSALEGKAILDALAGRNDAKAFQVILNGHS 104
+ + E SE+L +M +T ++ LAG G
Sbjct: 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTT-------LIKLLAGALKPD------EGQD 409
Query: 105 IPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGL 164
IP K + + V Q F+ +R + T +++ L +
Sbjct: 410 IP----KLNVSMKPQKIAPKFPGTVRQL--FFKKIRGQFLNPQFQTD------VVKPLRI 457
Query: 165 TQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
++ V L+ EL+R++I L ADI L+D P+ ++D
Sbjct: 458 DDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS 500
Score = 37.7 bits (88), Expect = 0.009
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFL 217
I+ L L VL + +L+ EL+R +I + AD+ + D P+ ++D+ + +
Sbjct: 205 YIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQII 264
Query: 218 RGWASGGPAGMAGKMVIL 235
R + K VI
Sbjct: 265 RSLLA------PTKYVIC 276
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 53.1 bits (128), Expect = 1e-07
Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 18/152 (11%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSIPLNALKRRLV 115
+ + E K E++ I+ + + GK L G A V + + K + +
Sbjct: 284 LVVDNGEAKEGEIIGILGPNGI-GKTTFARILVGEITADEGSVTPEKQIL---SYKPQRI 339
Query: 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRL 175
F + + V Q L + + S + + L L ++L + V L
Sbjct: 340 ------FPNYDGTVQQYLE--NASKDALSTSSWFFEE-----VTKRLNLHRLLESNVNDL 386
Query: 176 TTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
+ EL++L IA L AD+ +LD P+ ++D+
Sbjct: 387 SGGELQKLYIAATLAKEADLYVLDQPSSYLDV 418
Score = 40.8 bits (96), Expect = 9e-04
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFL 217
+ E L +T + + L+ L+RL +A L+ AD+ + D P+ ++D+ + + + +
Sbjct: 122 VKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI 181
Query: 218 RGWASG 223
R
Sbjct: 182 RELLKN 187
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 51.5 bits (124), Expect = 4e-07
Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 20/152 (13%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSIPLNALKRRLV 115
++ E+K EV+ I+ + + GK + LAG + ++ + +
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGI-GKTTFVKMLAGVEEPTEGKIEWDL----------TVA 350
Query: 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRL 175
Y E V + L+ + K+ ++ L++ LG+ + V L
Sbjct: 351 YKPQYIKADYEGTVYELLS--------KIDASKLNSNFYKTELLKPLGIIDLYDREVNEL 402
Query: 176 TTSELKRLSIACCLMSHADILLLDCPTVFMDI 207
+ EL+R++IA L+ ADI LLD P+ ++D+
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDV 434
Score = 41.1 bits (97), Expect = 7e-04
Identities = 46/240 (19%), Positives = 85/240 (35%), Gaps = 42/240 (17%)
Query: 38 PHLQVRGLEVPPS---SKNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGR--- 90
P + LE N FV VK V+ I+ + GK+ + LAG+
Sbjct: 16 PRSHMEQLEEDCVHRYGVNA-FVLYRLPVVKEGMVVGIVGPNGT-GKSTAVKILAGQLIP 73
Query: 91 ---NDAKAFQVILNGHSI-PLNALKRRL------VYVRSQSF-LSPELNVAQTLTFYSHL 139
D ++ ++ L +L V+ Q L P+ + +
Sbjct: 74 NLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL--- 130
Query: 140 RRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLD 199
K E +++ L L VL + L+ EL+R++IA L+ +A D
Sbjct: 131 ---KKADETGKLEE----VVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFD 183
Query: 200 CPTVFMDIFDTFFLVEFLRGWASGGPA------------GMAGKMVILTLQPPTYEIFTM 247
P+ ++DI +R + G + ++ + ++ +P Y IF+
Sbjct: 184 EPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQ 243
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 45.8 bits (108), Expect = 3e-05
Identities = 38/228 (16%), Positives = 68/228 (29%), Gaps = 21/228 (9%)
Query: 1 MLHMSQTHLHDRAASALSHSHLDGGAPSFQSGRPEFFPHLQVRGLEVPPS--SKNKCFVQ 58
+ Q ++ + A + G
Sbjct: 380 ERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNC 439
Query: 59 GVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDA-KA--FQVILNGHSIPLNALKR-RL 114
S +L + + G N K+ + I NG + R
Sbjct: 440 EFSLAYGAKILLNKTQLRLKRARRY--GICGPNGCGKSTLMRAIANGQVDGFPTQEECRT 497
Query: 115 VYVRSQS-FLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQV-LSTRV 172
VYV + +V + V T E + + E G T ++ +
Sbjct: 498 VYVEHDIDGTHSDTSVLDFV-----------FESGVGTKEAIKDKLIEFGFTDEMIAMPI 546
Query: 173 GRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGW 220
L+ +L++A ++ +ADILLLD PT +D + +LV +L
Sbjct: 547 SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC 594
Score = 45.0 bits (106), Expect = 6e-05
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 142 PPKHSIKVTTSEQMGLLIEELGLT--QVLSTRVGRLTTSELKRLSIACCLMSHADILLLD 199
+ T +++ LGL V +R+ L+ + +L +A +++LD
Sbjct: 867 LASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLD 926
Query: 200 CPTVFMDIFDTFFLVEFLRGWASG 223
PT ++D L + L+ + G
Sbjct: 927 EPTNYLDRDSLGALSKALKEFEGG 950
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 40.6 bits (96), Expect = 5e-04
Identities = 49/251 (19%), Positives = 88/251 (35%), Gaps = 55/251 (21%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIM-------STSALEGKAILDALAGRND 92
+Q++ + + +S EV+ E+L ++ ST +L +AG
Sbjct: 5 MQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKST-------LLARMAGMTS 51
Query: 93 AKAFQVILNG---HSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKV 149
K + G + L Y+ Q V LT L + K ++
Sbjct: 52 GKG-SIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLT----LHQHDKTRTEL 106
Query: 150 TTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCL-------MSHADILLLDCPT 202
+ L L L +L+ E +R+ +A + +LLLD P
Sbjct: 107 LND-----VAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPM 161
Query: 203 VFMDIFDTFFLVEFLRGWASGGPAGMAGKMVI----LTLQPPTYEIFTMISRVLLVSGGR 258
+D+ L + L + G+A M TL+ + R L+ GG+
Sbjct: 162 NSLDVAQQSALDKILSALSQ---QGLAIVMSSHDLNHTLR---HA-----HRAWLLKGGK 210
Query: 259 TMYSGKRRDML 269
+ SG+R ++L
Sbjct: 211 MLASGRREEVL 221
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 38.5 bits (90), Expect = 0.003
Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 14/148 (9%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSIPLNALKRRLV 115
++ ++ EV G E + I+ + GK +L A++G + +NG + R
Sbjct: 21 LENINLEVNG-EKVIILGPNG-SGKTTLLRAISGLLPYSG-NIFINGMEVRKIRNYIRYS 77
Query: 116 YVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTR-VGR 174
+++ + V + Y L+ + E +++ L L + + R + +
Sbjct: 78 TNLPEAYE-IGVTVNDIVYLYEELKGLDRDLFL----E----MLKALKLGEEILRRKLYK 128
Query: 175 LTTSELKRLSIACCLMSHADILLLDCPT 202
L+ + + + L S +I+ LD P
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPF 156
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 37.9 bits (89), Expect = 0.004
Identities = 38/183 (20%), Positives = 75/183 (40%), Gaps = 37/183 (20%)
Query: 38 PHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIM-------STSALEGKAILDALAGR 90
L V L ++N F Q ++F++ ++LA++ ST +LD L G
Sbjct: 3 KALSVENLGFYYQAENFLF-QQLNFDLNKGDILAVLGQNGCGKST-------LLDLLLGI 54
Query: 91 NDAKAFQVILNGHSIPLNALKRRLVYVRSQSFLSPE-LNVAQTLTF--YSHL---RRPPK 144
+ ++ + + + +V Q F SP +V + +H+ +P
Sbjct: 55 HRPIQGKI----------EVYQSIGFV-PQFFSSPFAYSVLDIVLMGRSTHINTFAKPKS 103
Query: 145 HSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVF 204
H +V + + + L LT + L+ + + + IA + S ++LLD PT
Sbjct: 104 HDYQVAM-QAL----DYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSA 158
Query: 205 MDI 207
+D+
Sbjct: 159 LDL 161
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 36.7 bits (86), Expect = 0.012
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCP 201
++E L L+ + + G L+ ++K + I LM++ ++++D P
Sbjct: 137 ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 31.3 bits (72), Expect = 0.62
Identities = 43/194 (22%), Positives = 77/194 (39%), Gaps = 54/194 (27%)
Query: 57 VQGVSFEVKGSEVLAIM-------STSALEGKAILDALAGRNDAKAFQVILNGHSI---- 105
++G+ +V +++ ++ +T L A+AG A+ ++I NG I
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTT-------TLSAIAGLVRAQKGKIIFNGQDITNKP 74
Query: 106 PLNALKRRLVYV---RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEE- 161
+ + V R + F PEL V + L ++ R+ E + +E
Sbjct: 75 AHVINRMGIALVPEGR-RIF--PELTVYENLMMGAYNRK---------DKEGIKRDLEWI 122
Query: 162 LGLTQVLSTRVGRL--TTS--ELKRLSIACCLMSHADILLLD------CPTVFMDIFD-- 209
L L R+ +L T S E + L+I LMS +L++D P + ++F+
Sbjct: 123 FSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182
Query: 210 --------TFFLVE 215
T LVE
Sbjct: 183 QKINQEGTTILLVE 196
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 30.0 bits (67), Expect = 1.8
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 182 RLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGP 225
RL+++ L +L+LD PT ++D L+ + + P
Sbjct: 262 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP 305
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 29.4 bits (67), Expect = 2.2
Identities = 38/170 (22%), Positives = 59/170 (34%), Gaps = 45/170 (26%)
Query: 59 GVSFEVKGSEVLAIMSTSALEGKA----ILDAL----AGRNDAKAFQVILNGHSIPLNAL 110
V+ +K E ++IM S GK+ I+ L G +V ++ N L
Sbjct: 23 NVNLNIKEGEFVSIMGPSG-SGKSTMLNIIGCLDKPTEG-------EVYIDNIKT--NDL 72
Query: 111 KRR-LVYVRS-------QSF-LSPEL----NVAQTLTFYSHLRRPPKHSIKVTTSEQMGL 157
L +R Q F L P L NV L F + K
Sbjct: 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE----- 127
Query: 158 LIEELGLTQVLSTRVGRLTTSEL-----KRLSIACCLMSHADILLLDCPT 202
++ L R ++L +R++IA L ++ I+L D PT
Sbjct: 128 CLKMAE----LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPT 173
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 29.0 bits (66), Expect = 3.0
Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 39/165 (23%)
Query: 59 GVSFEVKGSEVLAIMSTSALEGKA----ILDAL----AGRNDAKAFQVILNGHSIPLNAL 110
G+S VK E ++I+ S GK+ IL L G+ V L G + +
Sbjct: 22 GISLSVKKGEFVSIIGASG-SGKSTLLYILGLLDAPTEGK-------VFLEGKEV--DYT 71
Query: 111 KRR-LVYVRS-------QSF-LSPEL----NVAQTLTFYSHLRRPPKHSIKVTTSEQMGL 157
+ L +R+ Q L PEL NV + + E+
Sbjct: 72 NEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPM-LKMGKPKKEAK-------ERGEY 123
Query: 158 LIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPT 202
L+ ELGL LS + L+ E +R++IA L + +L D PT
Sbjct: 124 LLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPT 168
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; 2.50A {Mycobacterium tuberculosis}
Length = 247
Score = 28.5 bits (63), Expect = 5.4
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 295 LDDLSA--EAMLESSQRIEQLSELFR----RREEPLSDPPLPHLLIPKIGSASPLRQVFA 348
L + +L + F L+DP LP L+P + LR +
Sbjct: 161 LSGWTEAGHRLLGDMAAATDMPGRFVVAAAMVRHLLTDPMLPAELLPADWPGAGLRAAYH 220
Query: 349 LFLRQMA 355
F MA
Sbjct: 221 DFATAMA 227
>3tej_A Enterobactin synthase component F; nonribosomal peptide,
thioesterase, carrier domain, ATP- BIN enterobactin
biosynthesis, ION transport, iron; HET: UF0; 1.90A
{Escherichia coli} PDB: 2roq_A
Length = 329
Score = 28.1 bits (63), Expect = 7.3
Identities = 6/47 (12%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 297 DLSAEAMLESSQRIEQLSELFRRREEPLSDPPLPHLLIPKIGSASPL 343
++ ++ +S + +L+ + E+ +L + G+ L
Sbjct: 59 QVTPGQVMVAS-TVAKLATIIDAEEDSTRRMGFETILPLREGNGPTL 104
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 27.8 bits (62), Expect = 9.3
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 316 LFRRREEPLSDPPLPHLLIPKIGSASPLRQVFALFLRQMA 355
L RRR +PPL IP +G A + A FL +M
Sbjct: 9 LSRRRTRRPGEPPLDLGSIPWLGYALDFGKDAASFLTRMK 48
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 27.0 bits (60), Expect = 9.5
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 181 KRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGP 225
RL+++ L +L+LD PT ++D L+ + + P
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.419
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,938,818
Number of extensions: 483113
Number of successful extensions: 1203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1182
Number of HSP's successfully gapped: 41
Length of query: 515
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 417
Effective length of database: 3,965,535
Effective search space: 1653628095
Effective search space used: 1653628095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.4 bits)