RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10236
(515 letters)
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 76.0 bits (187), Expect = 3e-16
Identities = 38/215 (17%), Positives = 82/215 (38%), Gaps = 13/215 (6%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHS-IPLNALKRRL 114
V ++ +K E L ++ S GK L +AG + ++ L R +
Sbjct: 22 VNKLNLTIKDGEFLVLLGPSG-CGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNI 80
Query: 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGR 174
V + P + V + + F +++ PK I E L + ++L+ +
Sbjct: 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRW----AAELLQIEELLNRYPAQ 136
Query: 175 LTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVI 234
L+ + +R+++A ++ D+LL+D P +D + ++ I
Sbjct: 137 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ-----KLKVTTI 191
Query: 235 LTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
E TM R+ +++ G+ + G ++
Sbjct: 192 YVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVY 225
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 74.6 bits (183), Expect = 1e-15
Identities = 44/257 (17%), Positives = 104/257 (40%), Gaps = 25/257 (9%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQV 98
+ V+ L K ++G+SFE++ E+ ++ + GK L ++ + V
Sbjct: 3 VVVKDLRK--RIGKKEILKGISFEIEEGEIFGLIGPNG-AGKTTTLRIISTLIKPSSGIV 59
Query: 99 ILNGHSIPLN--ALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMG 156
+ G ++ +++ + Y+ ++ + + L F + I+ E +
Sbjct: 60 TVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIE----EMVE 115
Query: 157 LLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEF 216
E GL + + RV + +++L IA LM + + +LD PT +D+ + + +
Sbjct: 116 RATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI 175
Query: 217 LRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDMLPYFAAAD 276
L+ + + IL E+ + R+ L+ G + +G ++ + A
Sbjct: 176 LKQAS-------QEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA-- 226
Query: 277 YPCPAFKNPSDYYLDLV 293
+N + + ++V
Sbjct: 227 ------QNIEEVFEEVV 237
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 70.3 bits (172), Expect = 2e-14
Identities = 37/238 (15%), Positives = 84/238 (35%), Gaps = 18/238 (7%)
Query: 40 LQVRGLEVPPSSKNKCF--VQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQ 97
+++ + + + VS V ++ ++ S ++ +
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 98 VILNGHSI------PLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTT 151
V+++G + L +R++ + L V + L PK +K
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 152 SEQMGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTF 211
+E L+ +GL + L+ + +R++IA L S+ +LL D T +D T
Sbjct: 122 TE----LLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177
Query: 212 FLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
++E L+ G ++L + + V ++S G + ++
Sbjct: 178 SILELLKDINR-----RLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEVF 229
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 68.0 bits (166), Expect = 7e-14
Identities = 30/180 (16%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQV 98
L++R L V +K ++ ++ ++ V+ + GK +L ++ ++
Sbjct: 3 LEIRDLSV---GYDKPVLERITMTIEKGNVVNFHGPNG-IGKTTLLKTISTYLKPLKGEI 58
Query: 99 ILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLL 158
I NG P+ +K ++ ++ + + +++V L + L + ++
Sbjct: 59 IYNGV--PITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMD------A 110
Query: 159 IEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLR 218
+E + + + ++G L+ ++R+ +A L+ +A+I +LD P V +D +++ +
Sbjct: 111 LESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSIL 169
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 68.4 bits (167), Expect = 1e-13
Identities = 45/224 (20%), Positives = 84/224 (37%), Gaps = 29/224 (12%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSI---PLNALKR 112
+ +S EV+ E+L ++ + GK+ +L +AG K + G + L
Sbjct: 15 LGPLSGEVRAGEILHLVGPNG-AGKSTLLARMAGMTSGKG-SIQFAGQPLEAWSATKLAL 72
Query: 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRV 172
Y+ Q V LT + H + T +E + + L L L
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQHDK---------TRTELLNDVAGALALDDKLGRST 123
Query: 173 GRLTTSELKRLSIACCLMSHA-------DILLLDCPTVFMDIFDTFFLVEFLRGWASGGP 225
+L+ E +R+ +A ++ +LLLD P +D+ L + L
Sbjct: 124 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALC---- 179
Query: 226 AGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
G ++++ R L+ GG+ + SG+R ++L
Sbjct: 180 --QQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEVL 220
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 67.3 bits (164), Expect = 4e-13
Identities = 33/227 (14%), Positives = 79/227 (34%), Gaps = 22/227 (9%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSI----PLNALK 111
+ GVS V +V I+ + GK+ +++ + G A +V I P
Sbjct: 20 LDGVSISVNKGDVTLIIGPNG-SGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 78
Query: 112 RRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSI---------KVTTSEQMGLLIEEL 162
+V E+ V + L + + E+ ++E L
Sbjct: 79 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 138
Query: 163 GLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWAS 222
L+ + + G L+ ++K + I LM++ ++++D P + + + +
Sbjct: 139 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 198
Query: 223 GGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
G ++ + I + ++ G+ + G+ + +
Sbjct: 199 ------KGITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEEEI 238
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 66.5 bits (162), Expect = 5e-13
Identities = 36/227 (15%), Positives = 83/227 (36%), Gaps = 15/227 (6%)
Query: 49 PSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSI-- 105
P+ + +QG++F ++ EV A++ + GK+ + L Q++L+G +
Sbjct: 22 PNRPDVLVLQGLTFTLRPGEVTALVGPNG-SGKSTVAALLQNLYQPTGGQLLLDGKPLPQ 80
Query: 106 -PLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEEL-- 162
L R++ V Q ++ + + + + + I L
Sbjct: 81 YEHRYLHRQVAAV-GQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQ 139
Query: 163 GLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWAS 222
G + +L+ + + +++A L+ +L+LD T +D + + L
Sbjct: 140 GYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPE 199
Query: 223 GGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
+ V+L Q + +L + GG G + ++
Sbjct: 200 -----RYSRSVLLITQHL--SLVEQADHILFLEGGAIREGGTHQQLM 239
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 66.4 bits (162), Expect = 6e-13
Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 33/249 (13%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQV 98
L V L ++GVS + + +V++I+ +S GK+ L + +
Sbjct: 3 LHVIDLHK--RYGGHEVLKGVSLQARAGDVISIIGSSG-SGKSTFLRCINFLEKPSEGAI 59
Query: 99 ILNGHSI----------------PLNALKRRLVYVRSQSFLSPELNVAQTLTFYS-HLRR 141
I+NG +I L L+ RL V L + V + + +
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 142 PPKHSIKVTTSEQMGLLIEELGLTQVLSTR-VGRLTTSELKRLSIACCLMSHADILLLDC 200
KH + + + ++G+ + + L+ + +R+SIA L D+LL D
Sbjct: 120 LSKHDARERALK----YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE 175
Query: 201 PTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTM 260
PT +D ++ ++ A G MV++T + + S V+ + G+
Sbjct: 176 PTSALDPELVGEVLRIMQQLAEEGKT-----MVVVTHEMG--FARHVSSHVIFLHQGKIE 228
Query: 261 YSGKRRDML 269
G +
Sbjct: 229 EEGDPEQVF 237
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 65.3 bits (159), Expect = 1e-12
Identities = 44/235 (18%), Positives = 91/235 (38%), Gaps = 19/235 (8%)
Query: 40 LQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQV 98
L+V+ L V ++G+ +V +++ ++ + GK L A+AG A+ ++
Sbjct: 7 LEVQSLHV--YYGAIHAIKGIDLKVPRGQIVTLIGANG-AGKTTTLSAIAGLVRAQKGKI 63
Query: 99 ILNGHSIPLNALKRRLVYVRSQSFLS----PELNVAQTLTFYSHLRRPPKHSIKVTTSEQ 154
I NG I + PEL V + L ++ R+ + + +
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKR----DL 119
Query: 155 MGLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLV 214
+ L + L G L+ E + L+I LMS +L++D P++ + +
Sbjct: 120 EWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 215 EFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
E ++ G ++L Q + ++ G+ + GK ++L
Sbjct: 180 EVIQKINQ------EGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASELL 227
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 65.2 bits (159), Expect = 2e-12
Identities = 37/237 (15%), Positives = 96/237 (40%), Gaps = 18/237 (7%)
Query: 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGK-AILDALAGRNDAKAFQ 97
+ + + + ++ ++ ++ E +A + S GK +++ + D + Q
Sbjct: 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSG-GGKSTLINLIPRFYDVTSGQ 74
Query: 98 VILNGHSI---PLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQ 154
++++GH+I +L+ ++ V+ + L V + + + ++
Sbjct: 75 ILIDGHNIKDFLTGSLRNQIGLVQQDNIL-FSDTVKENILLGRPTATDEE-VVEAAKMAN 132
Query: 155 MGLLIEEL--GLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFF 212
I L G + R +L+ + +RLSIA +++ IL+LD T +D+
Sbjct: 133 AHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI 192
Query: 213 LVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
+ E L + +I+ + T +++++ G + +G R+++
Sbjct: 193 IQEALDVLSKD------RTTLIVAHRL---STITHADKIVVIENGHIVETGTHRELI 240
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 63.3 bits (154), Expect = 6e-12
Identities = 41/228 (17%), Positives = 92/228 (40%), Gaps = 24/228 (10%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSI---PLNALKR 112
++ +SFE + + ++A S GK+ I L A ++ ++G I L +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSG-GGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIE--ELGLTQVLST 170
++ +V S + + + LT+ + +V +E L +
Sbjct: 77 QIGFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE 135
Query: 171 RVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAG 230
R +++ + +RL+IA + + IL+LD T +D + + L M G
Sbjct: 136 RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL-------MKG 188
Query: 231 KMVILTLQPPTYEIFTMIS--RVLLVSGGRTMYSGKRRDML---PYFA 273
+ ++ + + T++ ++ + G+ SGK +++ P +A
Sbjct: 189 RTTLVI----AHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYA 232
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 60.2 bits (146), Expect = 7e-11
Identities = 34/239 (14%), Positives = 89/239 (37%), Gaps = 21/239 (8%)
Query: 39 HLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQ 97
L+ R + + ++ ++ ++ + +A++ S GK+ I + D
Sbjct: 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGS-GKSTIASLITRFYDIDEGH 71
Query: 98 VILNGHSI---PLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQ 154
++++GH + L +L+ ++ V L + + + + +
Sbjct: 72 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN-IAYARTEEYSREQIEEAARMAY 130
Query: 155 MGLLIEEL--GLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFF 212
I ++ GL ++ L+ + +R++IA L+ + IL+LD T +D
Sbjct: 131 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 190
Query: 213 LVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMIS--RVLLVSGGRTMYSGKRRDML 269
+ L + ++ + + T+ +++V G + G ++L
Sbjct: 191 IQAALDEL-------QKNRTSLVI----AHRLSTIEQADEIVVVEDGIIVERGTHSELL 238
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 60.0 bits (145), Expect = 7e-11
Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 15/216 (6%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSI-PLNALKRRL 114
+ ++ ++ E + + S GK+ +L +AG + + + + +R +
Sbjct: 16 SKDINLDIHEGEFVVFVGPSG-CGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 74
Query: 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGR 174
V L P L+VA+ ++F L K I ++ + E L L +L +
Sbjct: 75 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQ----VAEVLQLAHLLDRKPKA 130
Query: 175 LTTSELKRLSIACCLMSHADILLLDCPTVFMD-IFDTFFLVEFLRGWASGGPAGMAGKMV 233
L+ + +R++I L++ + LLD P +D +E R G M+
Sbjct: 131 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT-----MI 185
Query: 234 ILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
+T E T+ +++++ GR GK ++
Sbjct: 186 YVTHDQV--EAMTLADKIVVLDAGRVAQVGKPLELY 219
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 60.3 bits (146), Expect = 7e-11
Identities = 41/246 (16%), Positives = 96/246 (39%), Gaps = 33/246 (13%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGK-AILDALAGRNDAKAFQVILNGHSI---PLNALKR 112
+ ++ +K EV+ I+ S GK + + + QV+++GH + N L+R
Sbjct: 19 LDNINLSIKQGEVIGIVGRSG-SGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 77
Query: 113 RLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIE-ELGLTQVLSTR 171
++ V Q + ++ ++ + K + + E G ++ +
Sbjct: 78 QVGVVL-QDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 136
Query: 172 VGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGK 231
L+ + +R++IA L+++ IL+ D T +D ++ + G+
Sbjct: 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-------CKGR 189
Query: 232 MVILTLQPPTYEIFTMIS--RVLLVSGGRTMYSGKRRDMLPYFAAADYPCPAFKNPSDYY 289
VI+ + + T+ + R++++ G+ + GK +++ P Y
Sbjct: 190 TVIII----AHRLSTVKNADRIIVMEKGKIVEQGKHKEL-------------LSEPESLY 232
Query: 290 LDLVTL 295
L L
Sbjct: 233 SYLYQL 238
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 57.5 bits (139), Expect = 4e-10
Identities = 36/238 (15%), Positives = 92/238 (38%), Gaps = 20/238 (8%)
Query: 40 LQVRGLEV--PPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAF 96
++++ + + ++ V+ +K E ++IM S GK+ +L+ + +
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSG-SGKSTMLNIIGCLDKPTEG 60
Query: 97 QVILNGHSI-------PLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKV 149
+V ++ + ++ +V Q L P L + + + S +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE- 119
Query: 150 TTSEQMGLLIEELGLT-QVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIF 208
++ ++ L + + + +L+ + +R++IA L ++ I+L D PT +D
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSK 179
Query: 209 DTFFLVEFLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRR 266
+++ L+ G +V++T + R++ + G K R
Sbjct: 180 TGEKIMQLLKKLNEE--DGKT--VVVVTHDI---NVARFGERIIYLKDGEVEREEKLR 230
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 57.3 bits (138), Expect = 7e-10
Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 19/221 (8%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSIPLNALKRRL- 114
V+ +S EVK E + ++ S GK L +AG + Q+ + + +
Sbjct: 19 VREMSLEVKDGEFMILLGPSG-CGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP 77
Query: 115 ------VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVL 168
V L P + V + F LR+ P+ I E + E LGLT++L
Sbjct: 78 PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE----VAELLGLTELL 133
Query: 169 STRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGM 228
+ + L+ + +R+++ ++ + L+D P +D + L+
Sbjct: 134 NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR-----Q 188
Query: 229 AGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
G I E TM R+ +++ G G ++
Sbjct: 189 LGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEVY 228
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 54.9 bits (132), Expect = 5e-09
Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 33/242 (13%)
Query: 37 FPHLQVRGLEVPPSSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKA 95
F HL + G V ++ ++ ++ E+LAI ++ GK +L + G +A
Sbjct: 41 FSHLCLVGNPV---------LKNINLNIEKGEMLAITGSTG-SGKTSLLMLILGELEASE 90
Query: 96 FQVILNGHSIPLNALKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQM 155
+ +G R+ + S++ P + + + F S+ Q
Sbjct: 91 GIIKHSG----------RVSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQ 139
Query: 156 GLLIEELGLTQVLSTRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVE 215
+ VL L+ + R+S+A + AD+ LLD P ++D+F + E
Sbjct: 140 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 199
Query: 216 FLRGWASGGPAGMAGKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML---PYF 272
MA K IL E ++L++ G + + G ++ P F
Sbjct: 200 SCVCKL------MANKTRILVTSKM--EHLRKADKILILHQGSSYFYGTFSELQSLRPDF 251
Query: 273 AA 274
++
Sbjct: 252 SS 253
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 54.6 bits (131), Expect = 6e-09
Identities = 50/212 (23%), Positives = 91/212 (42%), Gaps = 16/212 (7%)
Query: 60 VSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSI-PLNALKRRLVYV 117
V FE+ + ++ + GK+ L+ +AG +V LNG I PL +R + +V
Sbjct: 18 VDFEMGR-DYCVLLGPTG-AGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 118 RSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGRLTT 177
L P L+V + + + + +V + E+LG+ +L + RL+
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVRE------MAEKLGIAHLLDRKPARLSG 129
Query: 178 SELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVILTL 237
E +R+++A L+ +LLLD P +D+ L+E LR + V L
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR--EFDVPILHVTHDL 187
Query: 238 QPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
E + V ++ GR + GK +++
Sbjct: 188 I----EAAMLADEVAVMLNGRIVEKGKLKELF 215
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 52.4 bits (125), Expect = 3e-08
Identities = 40/220 (18%), Positives = 90/220 (40%), Gaps = 18/220 (8%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSIPLN------A 109
+ V+ ++ E I+ S GK + +AG + ++ + + N
Sbjct: 21 LDNVNINIENGERFGILGPSG-AGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79
Query: 110 LKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLS 169
R++ V L P L + + F + K I+ +++ + + L + VL+
Sbjct: 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR----KRVEEVAKILDIHHVLN 135
Query: 170 TRVGRLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMA 229
L+ ++ +R+++A L+ +LLLD P +D ++ S +
Sbjct: 136 HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS----RLG 191
Query: 230 GKMVILTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
+++++ P +IF + RV ++ G+ + GK D+
Sbjct: 192 VTLLVVSHDPA--DIFAIADRVGVLVKGKLVQVGKPEDLY 229
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 51.6 bits (123), Expect = 4e-08
Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 16/215 (7%)
Query: 57 VQGVSFEVKGSEVLAIMSTSALEGKA-ILDALAGRNDAKAFQVILNGHSI-PLNALKRRL 114
+ +S +V+ E I+ + GK L+ +AG + + +++L+G + L+ K +
Sbjct: 16 LDNLSLKVESGEYFVILGPTG-AGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI 74
Query: 115 VYVRSQSFLSPELNVAQTLTFYSHLRRPPKHSIKVTTSEQMGLLIEELGLTQVLSTRVGR 174
+V L P +NV + L F +++ +++ +L + +L
Sbjct: 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKD-------PKRVLDTARDLKIEHLLDRNPLT 127
Query: 175 LTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMVI 234
L+ E +R+++A L+++ ILLLD P +D E L K+ +
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH------KKNKLTV 181
Query: 235 LTLQPPTYEIFTMISRVLLVSGGRTMYSGKRRDML 269
L + E M R+ +V G+ + GK ++
Sbjct: 182 LHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 32.4 bits (72), Expect = 0.098
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 184 SIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPA 226
+++ L +L+LD PT ++D L+ + + P
Sbjct: 217 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ 259
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 31.7 bits (70), Expect = 0.21
Identities = 14/83 (16%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 174 RLTTSELKRLSIACCLMSHADILLLDCPTVFMDIFDTFFLVEFLRGWASGGPAGMAGKMV 233
R+ RL+++ L +L+LD PT ++D L+ + + +++
Sbjct: 284 RIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI-----PQVI 338
Query: 234 ILTLQPPTYEIFTMISRVLLVSG 256
+++ + + R+ L +G
Sbjct: 339 LVSHDEELKDAADHVIRISLENG 361
>d1gx1a_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase IspF {Escherichia coli [TaxId: 562]}
Length = 157
Score = 25.9 bits (57), Expect = 8.5
Identities = 17/136 (12%), Positives = 35/136 (25%), Gaps = 23/136 (16%)
Query: 50 SSKNKCFVQGVSFEVKGSEVLAIMSTSALEGKAILDALAGRNDAKAFQVILNGHSIPLNA 109
+ + GV + L S + A+ DAL G +
Sbjct: 14 GGEGPIIIGGVRIP--YEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKG 71
Query: 110 LKRRLVYVRSQSFLSPELNVAQTLTFYSHLRRP---------------------PKHSIK 148
R + + + + + + P ++K
Sbjct: 72 ADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVK 131
Query: 149 VTTSEQMGLLIEELGL 164
TT+E++G G+
Sbjct: 132 ATTTEKLGFTGRGEGI 147
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.419
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,892,296
Number of extensions: 86893
Number of successful extensions: 297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 25
Length of query: 515
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 426
Effective length of database: 1,185,626
Effective search space: 505076676
Effective search space used: 505076676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (26.0 bits)