BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10239
(100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VKF|A Chain A, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|B Chain B, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 585
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 40 TIINEYTDWERPVQHPVNIRDETLEAL-SDAMVVAPSVNTADLHSS 84
TI YTDW +H R +TL AL +D VAP+V TADLHS+
Sbjct: 402 TIKFMYTDWAD--RHNPETRRKTLLALFTDHQWVAPAVATADLHSN 445
>pdb|3B3Q|A Chain A, Crystal Structure Of A Synaptic Adhesion Complex
pdb|3B3Q|B Chain B, Crystal Structure Of A Synaptic Adhesion Complex
Length = 577
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 40 TIINEYTDWERPVQHPVNIRDETLEAL-SDAMVVAPSVNTADLHSS 84
TI YTDW +H R +TL AL +D VAP+V TADLHS+
Sbjct: 397 TIKFMYTDWAD--RHNPETRRKTLLALFTDHQWVAPAVATADLHSN 440
>pdb|3BIW|A Chain A, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|B Chain B, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|C Chain C, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|D Chain D, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIX|A Chain A, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|B Chain B, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|C Chain C, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|D Chain D, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
Length = 574
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 40 TIINEYTDWERPVQHPVNIRDETLEAL-SDAMVVAPSVNTADLHSS 84
TI YTDW +H R +TL AL +D VAP+V TADLHS+
Sbjct: 385 TIKFMYTDWAD--RHNPETRRKTLLALFTDHQWVAPAVATADLHSN 428
>pdb|3BE8|A Chain A, Crystal Structure Of The Synaptic Protein Neuroligin 4
pdb|3BE8|B Chain B, Crystal Structure Of The Synaptic Protein Neuroligin 4
pdb|2WQZ|A Chain A, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2WQZ|B Chain B, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2XB6|A Chain A, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
pdb|2XB6|B Chain B, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
Length = 588
Score = 32.3 bits (72), Expect = 0.065, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 40 TIINEYTDWERPVQHPVNIRDETLEALSDAMVVAPSVNTADLHS 83
TI YTDW ++P R + +D VAP+V TADLH+
Sbjct: 388 TIKFMYTDWADK-ENPETRRKTLVALFTDHQWVAPAVATADLHA 430
>pdb|3BL8|A Chain A, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
pdb|3BL8|B Chain B, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
pdb|3BL8|C Chain C, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
pdb|3BL8|D Chain D, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
Length = 580
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 40 TIINEYTDWERPVQHPVNIRDETLEAL-SDAMVVAPSVNTADLHSSARS 87
TI YTDW + +R +TL AL +D VAP+V TA LH+ +S
Sbjct: 391 TIKFMYTDWAD--RDNGEMRRKTLLALFTDHQWVAPAVATAKLHADYQS 437
>pdb|3VAR|A Chain A, Crystal Structure Of Dnpep, Znzn Form
pdb|3VAT|A Chain A, Crystal Structure Of Dnpep, Znmg Form
Length = 496
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 29 NMRYHLSEILATIINEYTDWERPVQHPVNIRDE 61
NM HL ILAT I E + P P+N DE
Sbjct: 203 NMEMHLVPILATSIQEELEKGTPEPGPLNATDE 235
>pdb|2I0K|A Chain A, Cholesterol Oxidase From Brevibacterium Sterolicum-
His121ala Mutant
Length = 561
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 14/51 (27%)
Query: 38 LATIINEYTDW------------ERPVQHPVNIRDETLEALSDAMVVAPSV 76
+AT+IN++T+W E P+ PV IR L+ +D V PSV
Sbjct: 392 IATVINDFTEWFHERIEFYRAKGEFPLNGPVEIRCCGLDQAADVKV--PSV 440
>pdb|1I19|A Chain A, Crystal Structure Of Cholesterol Oxidase From B.Sterolicum
pdb|1I19|B Chain B, Crystal Structure Of Cholesterol Oxidase From B.Sterolicum
Length = 561
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 14/51 (27%)
Query: 38 LATIINEYTDW------------ERPVQHPVNIRDETLEALSDAMVVAPSV 76
+AT+IN++T+W E P+ PV IR L+ +D V PSV
Sbjct: 392 IATVINDFTEWFHERIEFYRAKGEFPLNGPVEIRCCGLDQAADVKV--PSV 440
>pdb|1K4Y|A Chain A, Crystal Structure Of Rabbit Liver Carboxylesterase In
Complex With 4- Piperidino-Piperidine
Length = 534
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 55 PVNIRDETLEALSDAMVVAPSVNTADLHSSA 85
PV +D L+ L+D + PSVN A H A
Sbjct: 387 PVKKKDLFLDMLADLLFGVPSVNVARHHRDA 417
>pdb|3TU3|B Chain B, 1.92 Angstrom Resolution Crystal Structure Of The
Full-Length Spcu In Complex With Full-Length Exou From
The Type Iii Secretion System Of Pseudomonas Aeruginosa
Length = 711
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 30 MRYHLSEILATIINEYTD--WERPVQHPVNIRDETLEALSDAMVVAPSVNTADLHSSARS 87
++ HL E L + E+ + + +H DE L AL D+M+ + + ++ A +
Sbjct: 474 IKAHLQERLQERVGEHLEKRLQASERHTFASLDEALLALDDSMLTSVAQQNPEITDGAVA 533
Query: 88 VRCNIRSTF 96
R R F
Sbjct: 534 FRQKARDAF 542
>pdb|4DYO|A Chain A, Crystal Structure Of Human Aspartyl Aminopeptidase (Dnpep)
In Complex With Aspartic Acid Hydroxamate
Length = 485
Score = 25.0 bits (53), Expect = 9.5, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 29 NMRYHLSEILATIINEYTDWERPVQHPVNIRDE 61
N HL ILAT I E + P P+N DE
Sbjct: 192 NTEMHLVPILATAIQEELEKGTPEPGPLNAVDE 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.127 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,833,269
Number of Sequences: 62578
Number of extensions: 49755
Number of successful extensions: 120
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 11
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)