BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10239
         (100 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9XTG1|NLGN1_CAEEL Neuroligin-1 OS=Caenorhabditis elegans GN=nlg-1 PE=1 SV=1
          Length = 798

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 28  RNM-RYHLSEILATIINEYTDWERPVQHPVNIRDETLEALSDAMVVAPSVNTADLHSSAR 86
           RN+  +H  EILA+IINEYTDWE P  HP +IR+  L ALSD +  AP + T   HS+  
Sbjct: 398 RNLYDFHREEILASIINEYTDWENPRDHPKSIRNGVLNALSDVLYTAPLIETLRSHSADE 457

Query: 87  SVRCNIRSTFAMKH 100
             +      FA  H
Sbjct: 458 VRKEANTFMFAFAH 471


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.305    0.121    0.324 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,951,041
Number of Sequences: 539616
Number of extensions: 1642658
Number of successful extensions: 99620
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1903
Number of HSP's successfully gapped in prelim test: 312
Number of HSP's that attempted gapping in prelim test: 50235
Number of HSP's gapped (non-prelim): 33380
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.8 bits)