Query psy10239
Match_columns 100
No_of_seqs 104 out of 302
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 21:26:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4389|consensus 99.1 3.8E-10 8.3E-15 93.0 6.9 73 16-89 368-446 (601)
2 cd00312 Esterase_lipase Estera 97.7 0.00015 3.3E-09 58.0 7.3 58 35-97 345-403 (493)
3 PF00135 COesterase: Carboxyle 97.4 0.00054 1.2E-08 54.4 6.4 73 22-98 364-438 (535)
4 COG2272 PnbA Carboxylesterase 82.3 1.2 2.6E-05 37.3 2.7 36 59-97 352-387 (491)
5 PF06470 SMC_hinge: SMC protei 59.2 11 0.00023 24.2 2.6 27 56-83 94-120 (120)
6 KOG1516|consensus 55.2 31 0.00067 28.1 5.2 58 37-97 383-441 (545)
7 PF10669 Phage_Gp23: Protein g 52.9 18 0.00039 24.5 2.9 24 6-29 54-77 (121)
8 PF12446 DUF3682: Protein of u 43.8 13 0.00028 26.0 1.1 15 4-18 97-111 (133)
9 PF08097 Toxin_26: Conotoxin T 29.6 22 0.00048 14.5 0.3 7 71-77 1-7 (11)
10 PF15564 Imm13: Immunity prote 29.2 38 0.00082 23.2 1.5 41 54-94 4-44 (131)
11 PF14684 Tricorn_C1: Tricorn p 25.3 70 0.0015 19.3 2.2 32 38-69 29-60 (70)
12 PF14863 Alkyl_sulf_dimr: Alky 23.7 1.2E+02 0.0026 21.1 3.4 45 36-85 31-83 (141)
13 KOG0852|consensus 22.1 52 0.0011 24.5 1.3 16 67-82 43-58 (196)
14 PF02084 Bindin: Bindin; Inte 21.4 52 0.0011 25.2 1.2 8 7-14 162-169 (238)
No 1
>KOG4389|consensus
Probab=99.06 E-value=3.8e-10 Score=92.97 Aligned_cols=73 Identities=18% Similarity=0.187 Sum_probs=60.2
Q ss_pred hHHHHhHHHHHH---HHhhhhhHHHHHHHHHhhcCC--CCCCCChHHH-HHHHHHhhccceecccHHHHHHHHhhCCCCc
Q psy10239 16 KEEEKKKEEEEK---RNMRYHLSEILATIINEYTDW--ERPVQHPVNI-RDETLEALSDAMVVAPSVNTADLHSSARSVR 89 (100)
Q Consensus 16 ~~~~~~~~~~l~---~l~~~~~~~i~~aV~~eYtd~--~~~~~dp~~~-Rd~l~dl~gD~~FvcPt~~~A~~hs~~G~~~ 89 (100)
+.+++++..|+. ..++..++.++++++++|++| .++ ..|..+ |+++.+++|||+|+||++++|.+++..|++|
T Consensus 368 n~~~itR~ef~e~~~~~f~~~~~~~r~a~~~~ytd~~~~~~-~~p~~~y~~~~~~~vGDyfFtC~~~e~A~~~~~~g~~v 446 (601)
T KOG4389|consen 368 NASLITRDEFLEGVRVFFPGVSDLAREAIKFHYTDWHVLDP-GRPERLYREALGDVVGDYFFTCPVNEFADALAEQGASV 446 (601)
T ss_pred ccccCCHHHHHHHHHHhcccccHHHHHHHHHhcCchhhcCc-cchhhhHHHHHHHhhcceeeecCHHHHHHHHHHhcCcE
Confidence 455555555555 555666777899999999999 566 777775 9999999999999999999999999999985
No 2
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=97.70 E-value=0.00015 Score=57.99 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHhhccceecccHHHHHHHHhhC-CCCcchhheecc
Q psy10239 35 SEILATIINEYTDWERPVQHPVNIRDETLEALSDAMVVAPSVNTADLHSSA-RSVRCNIRSTFA 97 (100)
Q Consensus 35 ~~i~~aV~~eYtd~~~~~~dp~~~Rd~l~dl~gD~~FvcPt~~~A~~hs~~-G~~~~~~~~~~~ 97 (100)
..+.+.|...|.++. +++...++.+.+++||+.|.||+..+|+.+++. |.+| ++|.|.
T Consensus 345 ~~~~~~i~~~Y~~~~---~~~~~~~~~~~~l~sD~~f~~P~~~~a~~~~~~~~~~v--Y~Y~F~ 403 (493)
T cd00312 345 DALADKVLEKYPGDV---DDSVESRKNLSDMLTDLLFKCPARYFLAQHRKAGGSPV--YAYVFD 403 (493)
T ss_pred HHHHHHHHHHccCCC---CCcHHHHHHHHHHhhcccchhHHHHHHHHHHhccCCCe--EEEEec
Confidence 446778888998875 335667889999999999999999999998886 5554 666665
No 3
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=97.37 E-value=0.00054 Score=54.40 Aligned_cols=73 Identities=25% Similarity=0.236 Sum_probs=53.7
Q ss_pred HHHHHHHHhhhhhHH--HHHHHHHhhcCCCCCCCChHHHHHHHHHhhccceecccHHHHHHHHhhCCCCcchhheeccc
Q psy10239 22 KEEEEKRNMRYHLSE--ILATIINEYTDWERPVQHPVNIRDETLEALSDAMVVAPSVNTADLHSSARSVRCNIRSTFAM 98 (100)
Q Consensus 22 ~~~~l~~l~~~~~~~--i~~aV~~eYtd~~~~~~dp~~~Rd~l~dl~gD~~FvcPt~~~A~~hs~~G~~~~~~~~~~~~ 98 (100)
....+..++...... +.+.+...|.++..+ ++...++++.+++||+.|.||...++..++..|.++ ++|.|..
T Consensus 364 ~~~~~~~~l~~~~~~~~~~~~i~~~Y~~~~~~--~~~~~~~~~~~~~sD~~f~~p~~~~~~~~~~~~~~v--Y~Y~F~~ 438 (535)
T PF00135_consen 364 FEDLLPSLLPYYSSDSRIADAIKEFYPDDPDP--NDSDSRDRLAQLLSDIFFTCPARRAANHLASGGSPV--YLYRFDY 438 (535)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSSTTST--THHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSCE--EEEEEHH
T ss_pred HHHHHhhhhcccccccccchhhhccccccccc--cchhhhHHHhhccCcceeeecccccccccccccccc--ceeeccc
Confidence 445555555443222 588899999998642 445555999999999999999878888888888887 7777753
No 4
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=82.32 E-value=1.2 Score=37.29 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=27.9
Q ss_pred HHHHHHhhccceecccHHHHHHHHhhCCCCcchhheecc
Q psy10239 59 RDETLEALSDAMVVAPSVNTADLHSSARSVRCNIRSTFA 97 (100)
Q Consensus 59 Rd~l~dl~gD~~FvcPt~~~A~~hs~~G~~~~~~~~~~~ 97 (100)
......+++|..|.||+++.|++|+ .+.++ .+|-|.
T Consensus 352 ~~~~~~~~tD~~F~~p~~~~a~a~~-~~ap~--w~Yrf~ 387 (491)
T COG2272 352 AAAFGALVTDRLFKAPSIRLAQAQS-AGAPT--WLYRFD 387 (491)
T ss_pred HHHHHHHhhcceecchHHHHHHhcc-cCCCe--eEEEec
Confidence 4578889999999999999999998 44554 444443
No 5
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=59.19 E-value=11 Score=24.23 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhccceecccHHHHHHHHh
Q psy10239 56 VNIRDETLEALSDAMVVAPSVNTADLHS 83 (100)
Q Consensus 56 ~~~Rd~l~dl~gD~~FvcPt~~~A~~hs 83 (100)
..++..+..++|| .|+|++...|+.++
T Consensus 94 ~~~~~~~~~llg~-~~vv~~l~~A~~la 120 (120)
T PF06470_consen 94 EEYRPALEFLLGD-VVVVDDLEEARKLA 120 (120)
T ss_dssp GGGHHHHHHHHTT-EEEESSHHHHHHHH
T ss_pred HHHHHHHHHHcCC-EEEECCHHHHHHhC
Confidence 3578899999998 67889999998764
No 6
>KOG1516|consensus
Probab=55.25 E-value=31 Score=28.07 Aligned_cols=58 Identities=9% Similarity=-0.025 Sum_probs=40.9
Q ss_pred HHHHHHHhhcCCCCCCCChHH-HHHHHHHhhccceecccHHHHHHHHhhCCCCcchhheecc
Q psy10239 37 ILATIINEYTDWERPVQHPVN-IRDETLEALSDAMVVAPSVNTADLHSSARSVRCNIRSTFA 97 (100)
Q Consensus 37 i~~aV~~eYtd~~~~~~dp~~-~Rd~l~dl~gD~~FvcPt~~~A~~hs~~G~~~~~~~~~~~ 97 (100)
........|...... .+... ....+.++.+|..|..|+..++......+ ..+..|.|.
T Consensus 383 ~~~~~~~~y~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~y~f~ 441 (545)
T KOG1516|consen 383 NISVLKAYYLKDSAG-SKEFGYSLTSLSDIVSDLLFNFGTHRLLRLRREYG--NPVYLYSFD 441 (545)
T ss_pred HHHHHHHHhccccCc-hhhhhhhHHHHHHHhhhhheeccHHHHHHHHHhcC--CCeEEEEEE
Confidence 445566667665432 22222 56789999999999999999999999998 444455543
No 7
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=52.88 E-value=18 Score=24.49 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=17.9
Q ss_pred hhHHHHHHHhhHHHHhHHHHHHHH
Q psy10239 6 KEEEEEEEKKKEEEKKKEEEEKRN 29 (100)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~l 29 (100)
|.|+++++++++|..+...+++.+
T Consensus 54 K~E~~~q~r~rES~~Er~K~~~s~ 77 (121)
T PF10669_consen 54 KKEEKRQKRNRESKRERQKFIWSM 77 (121)
T ss_pred HHHHHHHHHhhhhHHHHHhHHhhh
Confidence 345667778888888888888743
No 8
>PF12446 DUF3682: Protein of unknown function (DUF3682); InterPro: IPR022152 This domain family is found in eukaryotes, and is typically between 125 and 136 amino acids in length.
Probab=43.75 E-value=13 Score=25.99 Aligned_cols=15 Identities=53% Similarity=0.813 Sum_probs=6.2
Q ss_pred hhhhHHHHHHHhhHH
Q psy10239 4 EKKEEEEEEEKKKEE 18 (100)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (100)
|++||||+.||-.++
T Consensus 97 EeeEEeEe~Ekqqqs 111 (133)
T PF12446_consen 97 EEEEEEEENEKQQQS 111 (133)
T ss_pred hhhhhhhhhhhhhcc
Confidence 333344444444433
No 9
>PF08097 Toxin_26: Conotoxin T-superfamily; InterPro: IPR012631 This family consists of the T-superfamily of conotoxins. Eight different T-superfamily peptides from five Conus species were identified. These peptides share a consensus signal sequence, and a conserved arrangement of cysteine residues. T-superfamily peptides were found expressed in venom ducts of all major feeding types of Conus, suggesting that the T-superfamily is a large and diverse group of peptides, widely distributed in the 500 different Conus species [].; GO: 0005576 extracellular region
Probab=29.55 E-value=22 Score=14.53 Aligned_cols=7 Identities=14% Similarity=0.506 Sum_probs=4.8
Q ss_pred ecccHHH
Q psy10239 71 VVAPSVN 77 (100)
Q Consensus 71 FvcPt~~ 77 (100)
|.||++.
T Consensus 1 fccpvir 7 (11)
T PF08097_consen 1 FCCPVIR 7 (11)
T ss_pred CCcchhh
Confidence 6788764
No 10
>PF15564 Imm13: Immunity protein 13
Probab=29.16 E-value=38 Score=23.23 Aligned_cols=41 Identities=15% Similarity=-0.089 Sum_probs=25.0
Q ss_pred ChHHHHHHHHHhhccceecccHHHHHHHHhhCCCCcchhhe
Q psy10239 54 HPVNIRDETLEALSDAMVVAPSVNTADLHSSARSVRCNIRS 94 (100)
Q Consensus 54 dp~~~Rd~l~dl~gD~~FvcPt~~~A~~hs~~G~~~~~~~~ 94 (100)
|-...-..+..++.|+.|-||-...-..+....-++..|-|
T Consensus 4 df~svv~ef~~lind~~f~cp~klwy~~li~lsk~v~diyy 44 (131)
T PF15564_consen 4 DFHSVVAEFGNLINDFGFSCPEKLWYDNLISLSKNVIDIYY 44 (131)
T ss_pred HHHHHHHHHHHHHHhhCCCCchHhcccchhhhhhccceeEE
Confidence 33344567889999999999976543333333334444443
No 11
>PF14684 Tricorn_C1: Tricorn protease C1 domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=25.34 E-value=70 Score=19.28 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=22.6
Q ss_pred HHHHHHhhcCCCCCCCChHHHHHHHHHhhccc
Q psy10239 38 LATIINEYTDWERPVQHPVNIRDETLEALSDA 69 (100)
Q Consensus 38 ~~aV~~eYtd~~~~~~dp~~~Rd~l~dl~gD~ 69 (100)
=.+|..+|........+...+.+.+.+|+|..
T Consensus 29 W~~~~~~Y~p~v~~~~~~~el~~vl~eMl~eL 60 (70)
T PF14684_consen 29 WDAVYDRYRPLVPAAKTRDELYDVLNEMLGEL 60 (70)
T ss_dssp HHHHHHHHHGGGGG--SHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 55788899886654466777888888888764
No 12
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=23.69 E-value=1.2e+02 Score=21.07 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=24.8
Q ss_pred HHHHHHHHhhcCCCCCCCChHHH--------HHHHHHhhccceecccHHHHHHHHhhC
Q psy10239 36 EILATIINEYTDWERPVQHPVNI--------RDETLEALSDAMVVAPSVNTADLHSSA 85 (100)
Q Consensus 36 ~i~~aV~~eYtd~~~~~~dp~~~--------Rd~l~dl~gD~~FvcPt~~~A~~hs~~ 85 (100)
-.+.+|...|++|-+ .||..+ -..+++++|.. -.++..|+.+-+.
T Consensus 31 ~~vraIy~~Y~GWfD--gnP~~L~pl~p~~~A~~~v~l~GG~---d~vl~~A~~~~~~ 83 (141)
T PF14863_consen 31 WNVRAIYQGYLGWFD--GNPANLNPLPPEEEAKRYVELAGGA---DKVLERAQAALAA 83 (141)
T ss_dssp HHHHHHHHHHC-S----S-GGGTS---HHHHHHHHHHHTTCH---HHHHHHHHHHHHC
T ss_pred hhHHHHHHHcCCccC--CCccccCCCChHHHHHHHHHHcCCH---HHHHHHHHHHHHC
Confidence 368889999999985 556543 25566666653 2344444444333
No 13
>KOG0852|consensus
Probab=22.12 E-value=52 Score=24.49 Aligned_cols=16 Identities=25% Similarity=0.079 Sum_probs=12.4
Q ss_pred ccceecccHHHHHHHH
Q psy10239 67 SDAMVVAPSVNTADLH 82 (100)
Q Consensus 67 gD~~FvcPt~~~A~~h 82 (100)
.|+.|+||+--.|=.+
T Consensus 43 lDftfVcPteIiafSd 58 (196)
T KOG0852|consen 43 LDFTFVCPTEIIAFSD 58 (196)
T ss_pred CceeeECchhhhhhhh
Confidence 7999999987665443
No 14
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=21.35 E-value=52 Score=25.23 Aligned_cols=8 Identities=88% Similarity=1.111 Sum_probs=3.4
Q ss_pred hHHHHHHH
Q psy10239 7 EEEEEEEK 14 (100)
Q Consensus 7 ~~~~~~~~ 14 (100)
|||||||.
T Consensus 162 EeeeEEe~ 169 (238)
T PF02084_consen 162 EEEEEEEQ 169 (238)
T ss_pred hhHHHHHH
Confidence 44444443
Done!